Prediction of Structurally Conserved Regions without Homologous Structures

Upload a protein structure (PDB format) or a protein sequence (FASTA format) to predict the location of structurally conserved regions. The program uses features generated from the uploaded file and then a neural network to predict structural conservation. Using a PDB format allows the options of using structural, sequence, or both sets of features while using the FASTA format only allows the option of using sequence information. See the documentation for a more detailed explanation.

Enter/Upload a sequence in the FASTA format


or

Upload a structure in the PDB format


Choose options:

Structural Features (Secondary structure, Cβ contacts, Relative solvent accessibility)
Sequence Features (PSIBLAST PSSM, PSIBLAST residue conservation, PSIBLAST amino acid fraction, Predicted secondary structure, Predicted relative solvent accessibility)
All Features


Results can be emailed to the following address (recommended).

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