BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000047
(2693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The
Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 336 bits (861), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/510 (38%), Positives = 276/510 (54%), Gaps = 38/510 (7%)
Query: 1077 ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136
E +S QP ++GG+LR++Q++G+ W+ L++ NGILADEMGLGKTVQ +A I +L+
Sbjct: 223 EKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA 282
Query: 1137 KNDRGPFXXXXXXXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV--------- 1187
+ GP W WAP ++ I Y G + R + + +
Sbjct: 283 RRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKK 342
Query: 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247
KFNVLLTTYEY++ DR +L I+W ++ +DE HR+KNA L L ++ ++R+L
Sbjct: 343 TMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRML 400
Query: 1248 LTGTPXXXXXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXI 1307
+TGTP F ++ FE+ + +
Sbjct: 401 ITGTPLQNNIKELAALVNFLMPGRFTIDQEID------FENQDEEQEEY----------- 443
Query: 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRV-EENLGSI-GNSK 1365
I+ LH+ ++PF+LRRLK VE LP K ER++R E S Q K + +N ++ +K
Sbjct: 444 IHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAK 503
Query: 1366 G--RSVHNSVMELRNICNHPYLSQLHAEEV------DTLIPKHYLPPIVRLCGKLEMLDR 1417
G S+ N + EL+ NHPYL E V + ++ L ++ GK+ +LD+
Sbjct: 504 GGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQ 563
Query: 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477
LL +LK HRVL FS M R+LD++ DYL+ K + RLDG R ID FN DS
Sbjct: 564 LLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDS 623
Query: 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537
F+FLLS RAGG+G+NL ADTV+IFD+DWNPQ DLQA ARAHRIGQK V+V R +
Sbjct: 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683
Query: 1538 QTVEEQVRASAEHKLGVANQSITAGFFDNN 1567
TVEE+V A K+ + I+ G D N
Sbjct: 684 DTVEEEVLERARKKMILEYAIISLGVTDGN 713
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 147/501 (29%), Positives = 238/501 (47%), Gaps = 57/501 (11%)
Query: 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFXXXXXXX 1150
LR YQ+ G W+ + LAD+MGLGKT+Q IA+ + +N+ P
Sbjct: 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTPSLVICPLS 96
Query: 1151 XXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210
WE E++ +AP + V+ E+R KI + ++++LTTY L+ +L
Sbjct: 97 VLKNWEEELSKFAPHLRFAVF---HEDR-----SKIKLEDYDIILTTYAVLLRD---TRL 145
Query: 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXXXX 1270
+++W YI+IDE IKN K+ +K +S +R+ LTGTP
Sbjct: 146 KEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPG 205
Query: 1271 IFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKH--KVE 1328
+ S +F F P + GDN L ++ PF+LRR K+ +
Sbjct: 206 LLGSYSEFKSKFATPIKK-GDNMAK-------------EELKAIISPFILRRTKYDKAII 251
Query: 1329 NELPEKIERLVRCEASAYQKLLMKRVEENLGS-----IGNSKGRSVHNSVMELRNICNHP 1383
N+LP+KIE V C + Q + K ENL + G + + +++++L+ I +HP
Sbjct: 252 NDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHP 311
Query: 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKL-EMLDRLLPKLKATDHRVLF--FSTMTRLL- 1439
L + + V R GK+ ++ + L D +F F M +++
Sbjct: 312 ALLKGGEQSV-------------RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIR 358
Query: 1440 DVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498
+++E L T + Y G S +R +I KF S FI +LS++AGG G+NL +A
Sbjct: 359 NIIEKELNTEVPFLY----GELSKKERDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSA 413
Query: 1499 DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQS 1558
+ VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K +
Sbjct: 414 NRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDI 473
Query: 1559 ITAG-FFDNNTSAEDRREYLE 1578
I++G + S E+ R+ +E
Sbjct: 474 ISSGDSWITELSTEELRKVIE 494
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 143/490 (29%), Positives = 221/490 (45%), Gaps = 33/490 (6%)
Query: 1091 LREYQMSGLRWLVSLYN-----NQLNGILADEMGLGKTVQVIALICYLMETKNDRGP--- 1142
LR +Q G+++L N I+ADEMGLGKT+Q I LI L++ D P
Sbjct: 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID 115
Query: 1143 -FXXXXXXXXXXGWESEINFW-APRIHKI-VYCGPPEERRRLFKEKIVHQKFNV----LL 1195
W +E+ W R+ + + G +E I Q + L+
Sbjct: 116 KVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILI 175
Query: 1196 TTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXX 1255
+YE + L K + +I DEGHR+KN+ + L + R+L++GTP
Sbjct: 176 ISYETF--RLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQN 233
Query: 1256 XXXXXXXXXXXXXXXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVL 1315
I ++++F + F P D D + L ++
Sbjct: 234 DLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD--ADASDKDRAAGEQKLQELISIV 291
Query: 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN---LGSIGNSKGRSVHNS 1372
++RR + LP KIE++V C + QK L K + + S+ K S
Sbjct: 292 NRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLS 351
Query: 1373 VMEL-RNICNHP---YLSQLHAEE----VDTLIPKHYLPPIV--RLCGKLEMLDRLLPKL 1422
+ + +CNHP Y L EE L P++Y V +L GK+ +LD +L
Sbjct: 352 SITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMT 411
Query: 1423 KAT-DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481
+ T +V+ S T+ LD+ E ++Y Y+RLDG S R ++++FN SP FI
Sbjct: 412 RTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 471
Query: 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541
F+LS +AGG G+NL A+ +++FD DWNP D QA AR R GQK+ + R + T+E
Sbjct: 472 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531
Query: 1542 EQVRASAEHK 1551
E++ HK
Sbjct: 532 EKILQRQAHK 541
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With
Dsdna
Length = 500
Score = 168 bits (426), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 61/503 (12%)
Query: 1091 LREYQMSGLRWLVSLYNNQLN-GI-LADEMGLGKTVQVIALICYLMETKNDRGPFXXXXX 1148
LR YQ+ G W + N+L GI LAD+ GLGKT+Q IA+ + +N+ P
Sbjct: 38 LRPYQIKGFSW--XRFXNKLGFGICLADDXGLGKTLQTIAVFSD-AKKENELTPSLVICP 94
Query: 1149 XXXXXGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP 1208
WE E++ +AP + V+ E+R KI + ++++LTTY L+
Sbjct: 95 LSVLKNWEEELSKFAPHLRFAVF---HEDR-----SKIKLEDYDIILTTYAVLLRD---T 143
Query: 1209 KLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPXXXXXXXXXXXXXXXX 1268
+L +++W YI+IDE IKN K+ +K +S +R+ LTGTP
Sbjct: 144 RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIXTFLN 203
Query: 1269 XXIFNSSEDFSQWFNKPFESNGDNSPDXXXXXXXXXXXIINRLHQVLRPFVLRRLKH--K 1326
+ S +F F P + GDN L ++ PF+LRR K+
Sbjct: 204 PGLLGSYSEFKSKFATPIKK-GDNXAK-------------EELKAIISPFILRRTKYDKA 249
Query: 1327 VENELPEKIERLVRC----EASAYQKLLMKRVEENLGSI-GNSKGRSVHNSVMELRNICN 1381
+ N+LP+KIE V C E +A K ++ + N+ S+ G + + +++++L+ I +
Sbjct: 250 IINDLPDKIETNVYCNLTPEQAAXYKAEVENLFNNIDSVTGIKRKGXILSTLLKLKQIVD 309
Query: 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR---- 1437
HP L + + VR GK ++ + ++ F+
Sbjct: 310 HPALLKGGEQS-------------VRRSGKXIRTXEIIEEALDEGDKIAIFTQFVDXGKI 356
Query: 1438 LLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ 1496
+ +++E L T + Y G S +R +I KF S FI +LS++AGG G+NL
Sbjct: 357 IRNIIEKELNTEVPFLY----GELSKKERDDIISKFQNNPSVKFI-VLSVKAGGFGINLT 411
Query: 1497 AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556
+A+ VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K +
Sbjct: 412 SANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFK 471
Query: 1557 QSITAG-FFDNNTSAEDRREYLE 1578
I++G + S E+ R+ +E
Sbjct: 472 DIISSGDSWITELSTEELRKVIE 494
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 130/260 (50%), Gaps = 29/260 (11%)
Query: 1330 ELPEKIERLVRCEASAYQKLLMKRVEENLGS-----IGNSKGRSVHNSVMELRNICNHPY 1384
+LP+KIE V C + Q + K ENL + G + + +++++L+ I +HP
Sbjct: 24 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 83
Query: 1385 LSQLHAEEVDTLIPKHYLPPIVRLCGKL-EMLDRLLPKLKATDHRVLF--FSTMTRLL-D 1440
L + + V R GK+ ++ + L D +F F M +++ +
Sbjct: 84 LLKGGEQSV-------------RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 130
Query: 1441 VMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAAD 1499
++E L T + Y G S +R +I KF S FI +LS++AGG G+NL +A+
Sbjct: 131 IIEKELNTEVPFLY----GELSKKERDDIISKFQNNPSVKFI-VLSVKAGGFGINLTSAN 185
Query: 1500 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559
VI FD WNP V+ QA R +RIGQ R+V+V + +V T+EE++ K + I
Sbjct: 186 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 245
Query: 1560 TAG-FFDNNTSAEDRREYLE 1578
++G + S E+ R+ +E
Sbjct: 246 SSGDSWITELSTEELRKVIE 265
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELG--SSALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 53 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 104
Query: 410 HDGSSNTLSDANRA------VQVGRQNSVPGTAM--LRTMASRDTGKSSVSQTPVFSGMP 461
H G + + A V V + G + LR A D K G P
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKE--------DGRP 156
Query: 462 FKEQQLKQLR---AQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
+ + L AQ + FLA +N +H ++A N+ G
Sbjct: 157 LELRDLLHFSSQVAQGMAFLASKNC-----IHRDVAARNVLLTNG 196
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELG--SSALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 45 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 96
Query: 410 HDGSSNTLSDANRA------VQVGRQNSVPGTAM--LRTMASRDTGKSSVSQTPVFSGMP 461
H G + + A V V + G + LR A D K G P
Sbjct: 97 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKE--------DGRP 148
Query: 462 FKEQQLKQLR---AQCLVFLAFRNGLVPKKLHLEIALGNIFPREG 503
+ + L AQ + FLA +N +H ++A N+ G
Sbjct: 149 LELRDLLHFSSQVAQGMAFLASKNC-----IHRDVAARNVLLTNG 188
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles
Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles
Rna Polymerase During Transcription
Length = 968
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531
F ++D+ + L S G G N Q A + FD +NP + Q R RIGQ D+ +
Sbjct: 550 FAEEDTGAQVLLCS-EIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQI 608
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELGS--SALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 53 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 104
Query: 410 HDG 412
H G
Sbjct: 105 HLG 107
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELGS--SALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 53 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 104
Query: 410 HDG 412
H G
Sbjct: 105 HLG 107
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELGS--SALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 53 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 104
Query: 410 HDG 412
H G
Sbjct: 105 HLG 107
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 352 SLGANAFGKVHGAMPIGPSSYPTGELG--SSALSPVESQLFSTNRGDETSAMLSSGKVLE 409
+LGA AFGKV A G LG + L L ST DE A++S K++
Sbjct: 38 TLGAGAFGKVVEATAFG--------LGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS 89
Query: 410 HDG 412
H G
Sbjct: 90 HLG 92
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 1418 LLPKLKAT--DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475
LL L AT D L F + D +ED+L + Y + G S DR + +F
Sbjct: 266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 325
Query: 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524
SP L++ G+++ VI FD + + + R R+G
Sbjct: 326 KSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371
>pdb|3LGJ|A Chain A, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
From Bartonella Henselae
pdb|3LGJ|B Chain B, Crystal Structure Of Single-Stranded Binding Protein (Ssb)
From Bartonella Henselae
Length = 169
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240
N + T+E MNK+ K+ K +WH +++ H K A L+ K Y
Sbjct: 49 NFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVY 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,802,601
Number of Sequences: 62578
Number of extensions: 2969383
Number of successful extensions: 5751
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5724
Number of HSP's gapped (non-prelim): 31
length of query: 2693
length of database: 14,973,337
effective HSP length: 116
effective length of query: 2577
effective length of database: 7,714,289
effective search space: 19879722753
effective search space used: 19879722753
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)