Query 000047
Match_columns 2693
No_of_seqs 591 out of 3038
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 15:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 2E-151 5E-156 1420.1 58.7 857 816-1727 128-997 (1157)
2 KOG0385 Chromatin remodeling c 100.0 2E-108 4E-113 1011.8 46.6 511 1076-1607 153-670 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 6E-98 1E-102 930.0 54.3 522 1081-1613 607-1469(1958)
4 KOG0384 Chromodomain-helicase 100.0 2.7E-99 6E-104 964.0 40.6 505 1078-1607 358-888 (1373)
5 KOG0388 SNF2 family DNA-depend 100.0 7.9E-95 1.7E-99 877.0 41.5 592 947-1566 404-1182(1185)
6 PLN03142 Probable chromatin-re 100.0 1.2E-87 2.6E-92 887.5 56.7 509 1079-1612 159-674 (1033)
7 KOG0389 SNF2 family DNA-depend 100.0 2E-88 4.4E-93 838.6 42.0 476 1079-1563 387-913 (941)
8 KOG0387 Transcription-coupled 100.0 7.9E-86 1.7E-90 817.1 40.1 465 1089-1562 204-682 (923)
9 KOG0392 SNF2 family DNA-depend 100.0 2.1E-79 4.5E-84 776.8 40.4 465 1089-1561 974-1477(1549)
10 KOG0390 DNA repair protein, SN 100.0 2.2E-67 4.9E-72 671.0 41.4 472 1088-1567 236-736 (776)
11 KOG1015 Transcription regulato 100.0 2.2E-66 4.8E-71 641.5 35.6 533 1079-1616 658-1358(1567)
12 COG0553 HepA Superfamily II DN 100.0 2.2E-63 4.7E-68 657.6 38.6 476 1079-1561 326-845 (866)
13 KOG1002 Nucleotide excision re 100.0 3.3E-61 7.2E-66 571.6 32.0 463 1080-1562 175-773 (791)
14 KOG4439 RNA polymerase II tran 100.0 2.1E-60 4.7E-65 583.5 34.4 481 1071-1574 305-896 (901)
15 KOG1016 Predicted DNA helicase 100.0 8.8E-56 1.9E-60 539.6 29.2 481 1089-1576 253-887 (1387)
16 PRK04914 ATP-dependent helicas 100.0 8.4E-53 1.8E-57 556.2 40.4 438 1089-1562 151-629 (956)
17 KOG1000 Chromatin remodeling p 100.0 7.6E-52 1.6E-56 494.4 33.4 420 1089-1559 197-624 (689)
18 KOG0383 Predicted helicase [Ge 100.0 3.3E-50 7.2E-55 510.8 6.3 391 1080-1492 283-696 (696)
19 KOG1001 Helicase-like transcri 100.0 1.8E-45 3.8E-50 473.3 19.7 443 1093-1560 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 4.8E-39 1E-43 376.3 23.7 275 1094-1385 1-298 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 5.8E-36 1.3E-40 386.8 35.2 349 1088-1550 253-619 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.6E-34 3.4E-39 383.1 34.8 435 1089-1555 14-496 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 9.7E-29 2.1E-33 301.8 34.1 428 1089-1560 14-503 (542)
24 COG1061 SSL2 DNA or RNA helica 100.0 2.1E-27 4.6E-32 298.2 30.3 367 1087-1550 33-406 (442)
25 PHA02558 uvsW UvsW helicase; P 100.0 3E-27 6.6E-32 300.9 31.9 340 1088-1540 112-457 (501)
26 KOG0298 DEAD box-containing he 100.0 7.9E-29 1.7E-33 321.4 16.2 257 1109-1385 374-690 (1394)
27 PTZ00110 helicase; Provisional 99.9 3.7E-26 7.9E-31 293.6 29.3 323 1089-1538 151-484 (545)
28 PRK11776 ATP-dependent RNA hel 99.9 9.9E-26 2.1E-30 283.8 30.7 318 1089-1538 25-349 (460)
29 PRK10590 ATP-dependent RNA hel 99.9 1.6E-25 3.6E-30 282.0 27.5 313 1089-1531 22-347 (456)
30 PRK11192 ATP-dependent RNA hel 99.9 2E-25 4.2E-30 278.9 27.9 317 1089-1532 22-348 (434)
31 PRK01297 ATP-dependent RNA hel 99.9 4.7E-25 1E-29 279.0 29.6 319 1089-1537 108-441 (475)
32 PRK04837 ATP-dependent RNA hel 99.9 4.3E-25 9.4E-30 275.3 28.3 318 1089-1537 29-361 (423)
33 TIGR00614 recQ_fam ATP-depende 99.9 6.2E-25 1.3E-29 277.8 28.9 308 1089-1532 10-329 (470)
34 PLN00206 DEAD-box ATP-dependen 99.9 7.6E-25 1.6E-29 280.1 28.7 320 1089-1537 142-474 (518)
35 KOG0354 DEAD-box like helicase 99.9 3.2E-24 6.9E-29 274.4 33.8 440 1087-1560 59-550 (746)
36 KOG0331 ATP-dependent RNA heli 99.9 5.3E-25 1.1E-29 275.1 26.2 315 1090-1529 113-441 (519)
37 PRK04537 ATP-dependent RNA hel 99.9 1E-24 2.3E-29 281.5 28.4 314 1089-1531 30-359 (572)
38 PRK11634 ATP-dependent RNA hel 99.9 1E-23 2.2E-28 274.4 36.5 314 1089-1531 27-347 (629)
39 PTZ00424 helicase 45; Provisio 99.9 2.6E-24 5.7E-29 264.9 27.4 321 1089-1539 49-375 (401)
40 TIGR01389 recQ ATP-dependent D 99.9 6.8E-24 1.5E-28 275.0 27.9 305 1089-1531 12-326 (591)
41 PRK11057 ATP-dependent DNA hel 99.9 9.8E-24 2.1E-28 274.3 28.4 305 1089-1531 24-338 (607)
42 KOG0341 DEAD-box protein abstr 99.9 9.6E-26 2.1E-30 265.3 8.7 372 1031-1543 142-533 (610)
43 KOG0333 U5 snRNP-like RNA heli 99.9 5.8E-24 1.3E-28 258.6 23.5 425 1000-1538 182-624 (673)
44 COG0513 SrmB Superfamily II DN 99.9 4.4E-23 9.6E-28 263.6 29.1 333 1089-1551 50-392 (513)
45 KOG0330 ATP-dependent RNA heli 99.9 8.1E-23 1.8E-27 243.1 27.2 326 1090-1548 83-415 (476)
46 PLN03137 ATP-dependent DNA hel 99.9 1.4E-22 3.1E-27 268.3 28.3 311 1088-1533 458-784 (1195)
47 TIGR00643 recG ATP-dependent D 99.9 3.1E-21 6.8E-26 252.0 31.3 305 1089-1530 234-560 (630)
48 PRK13767 ATP-dependent helicas 99.9 4.2E-21 9E-26 258.2 31.6 328 1089-1533 31-395 (876)
49 TIGR03817 DECH_helic helicase/ 99.9 5E-21 1.1E-25 253.5 30.8 336 1089-1546 35-394 (742)
50 PRK11448 hsdR type I restricti 99.9 4.4E-21 9.5E-26 260.7 30.3 359 1088-1535 411-815 (1123)
51 PRK10917 ATP-dependent DNA hel 99.9 7.1E-21 1.5E-25 250.5 30.0 304 1089-1529 260-582 (681)
52 TIGR00580 mfd transcription-re 99.9 6.4E-21 1.4E-25 255.5 29.2 307 1088-1537 449-769 (926)
53 PRK10689 transcription-repair 99.9 4.2E-20 9.2E-25 252.0 32.2 303 1089-1529 599-912 (1147)
54 KOG1123 RNA polymerase II tran 99.9 2.2E-20 4.8E-25 225.7 22.9 341 1089-1543 301-658 (776)
55 PRK02362 ski2-like helicase; P 99.8 1.4E-19 3.1E-24 240.4 30.3 322 1089-1537 22-396 (737)
56 TIGR01587 cas3_core CRISPR-ass 99.8 1.7E-19 3.6E-24 220.0 27.3 314 1112-1550 2-353 (358)
57 KOG0328 Predicted ATP-dependen 99.8 1.9E-20 4.1E-25 215.6 16.3 317 1094-1541 53-376 (400)
58 PRK01172 ski2-like helicase; P 99.8 3.7E-19 8.1E-24 234.3 30.4 313 1089-1535 21-375 (674)
59 KOG0338 ATP-dependent RNA heli 99.8 6.7E-19 1.4E-23 214.3 29.5 332 1085-1547 198-540 (691)
60 KOG0350 DEAD-box ATP-dependent 99.8 6.3E-20 1.4E-24 223.3 20.4 374 1089-1552 158-552 (620)
61 PRK00254 ski2-like helicase; P 99.8 1.7E-18 3.7E-23 229.6 30.0 321 1089-1539 22-389 (720)
62 COG0514 RecQ Superfamily II DN 99.8 6.6E-19 1.4E-23 224.2 22.3 309 1089-1533 16-334 (590)
63 KOG0335 ATP-dependent RNA heli 99.8 7.4E-19 1.6E-23 217.8 21.8 325 1088-1532 94-440 (482)
64 KOG0348 ATP-dependent RNA heli 99.8 7.1E-18 1.5E-22 206.4 26.1 335 1092-1531 161-549 (708)
65 KOG0340 ATP-dependent RNA heli 99.8 3.9E-18 8.4E-23 201.9 22.5 323 1090-1541 29-364 (442)
66 KOG0339 ATP-dependent RNA heli 99.8 2.4E-18 5.2E-23 208.9 21.1 308 1109-1541 260-578 (731)
67 TIGR02621 cas3_GSU0051 CRISPR- 99.8 4.4E-18 9.6E-23 223.8 25.0 104 1424-1532 270-388 (844)
68 KOG0342 ATP-dependent RNA heli 99.8 2.2E-18 4.7E-23 210.7 20.1 312 1090-1528 104-429 (543)
69 TIGR03714 secA2 accessory Sec 99.8 1.9E-17 4.2E-22 216.2 28.9 395 1090-1531 68-532 (762)
70 KOG0345 ATP-dependent RNA heli 99.8 1.9E-17 4.2E-22 201.2 26.0 318 1089-1532 27-360 (567)
71 KOG0343 RNA Helicase [RNA proc 99.8 9.7E-18 2.1E-22 205.6 21.3 333 1089-1552 90-435 (758)
72 PRK09200 preprotein translocas 99.8 9.7E-17 2.1E-21 211.3 32.2 130 1407-1546 409-546 (790)
73 PRK12898 secA preprotein trans 99.8 2.4E-16 5.1E-21 204.2 35.1 130 1408-1547 455-592 (656)
74 TIGR00348 hsdR type I site-spe 99.8 9.1E-17 2E-21 211.5 29.6 368 1089-1536 237-649 (667)
75 TIGR00963 secA preprotein tran 99.7 1.3E-16 2.9E-21 207.5 27.9 119 1409-1532 388-513 (745)
76 COG4096 HsdR Type I site-speci 99.7 2.3E-17 4.9E-22 211.6 19.6 358 1085-1536 160-546 (875)
77 PRK09401 reverse gyrase; Revie 99.7 1.1E-16 2.5E-21 219.3 27.6 328 1088-1523 78-431 (1176)
78 KOG0336 ATP-dependent RNA heli 99.7 3.8E-17 8.3E-22 194.8 18.9 332 1061-1528 221-564 (629)
79 PRK09751 putative ATP-dependen 99.7 1.5E-16 3.3E-21 218.9 27.6 96 1425-1523 243-371 (1490)
80 KOG4284 DEAD box protein [Tran 99.7 2.7E-17 5.9E-22 203.5 16.0 312 1093-1527 50-370 (980)
81 COG1201 Lhr Lhr-like helicases 99.7 1.3E-16 2.9E-21 209.2 23.2 340 1089-1556 21-378 (814)
82 PHA02653 RNA helicase NPH-II; 99.7 4.2E-16 9E-21 204.1 27.5 328 1083-1541 153-517 (675)
83 KOG0347 RNA helicase [RNA proc 99.7 1.9E-16 4.2E-21 194.5 22.4 327 1093-1525 206-559 (731)
84 KOG0346 RNA helicase [RNA proc 99.7 2E-16 4.3E-21 191.0 21.9 322 1075-1532 34-406 (569)
85 KOG0326 ATP-dependent RNA heli 99.7 2.4E-17 5.1E-22 192.6 12.6 324 1073-1537 98-428 (459)
86 TIGR03158 cas3_cyano CRISPR-as 99.7 2.1E-15 4.6E-20 185.9 27.6 85 1425-1521 271-357 (357)
87 COG1200 RecG RecG-like helicas 99.7 1.5E-15 3.3E-20 193.6 26.2 303 1089-1529 261-584 (677)
88 TIGR01970 DEAH_box_HrpB ATP-de 99.7 2.3E-15 5.1E-20 200.8 27.6 107 1426-1538 209-336 (819)
89 KOG0332 ATP-dependent RNA heli 99.7 1.2E-15 2.7E-20 181.7 18.7 122 1410-1538 316-443 (477)
90 COG1205 Distinct helicase fami 99.7 5.2E-15 1.1E-19 198.2 26.1 338 1090-1550 70-434 (851)
91 PRK05580 primosome assembly pr 99.7 3.5E-15 7.6E-20 197.0 23.3 367 1089-1534 143-547 (679)
92 KOG0334 RNA helicase [RNA proc 99.7 1.4E-15 2.9E-20 199.1 19.1 321 1088-1537 385-719 (997)
93 PRK11664 ATP-dependent RNA hel 99.7 9E-15 1.9E-19 195.6 26.7 109 1425-1539 211-340 (812)
94 TIGR01054 rgy reverse gyrase. 99.6 2E-14 4.4E-19 197.7 27.8 314 1088-1508 76-409 (1171)
95 cd00079 HELICc Helicase superf 99.6 1.5E-15 3.2E-20 157.6 12.7 120 1410-1532 12-131 (131)
96 PF04851 ResIII: Type III rest 99.6 8.8E-16 1.9E-20 167.7 11.4 157 1089-1253 2-183 (184)
97 PRK14701 reverse gyrase; Provi 99.6 5.5E-15 1.2E-19 206.8 21.1 340 1088-1528 77-448 (1638)
98 KOG0327 Translation initiation 99.6 3.2E-15 6.9E-20 180.0 15.5 315 1093-1539 51-371 (397)
99 TIGR00595 priA primosomal prot 99.6 2.6E-14 5.5E-19 183.4 24.3 128 1114-1253 2-140 (505)
100 COG1204 Superfamily II helicas 99.6 2E-14 4.4E-19 190.6 23.2 311 1090-1526 31-396 (766)
101 KOG0344 ATP-dependent RNA heli 99.6 2E-14 4.4E-19 179.8 19.5 122 1409-1537 372-494 (593)
102 TIGR00631 uvrb excinuclease AB 99.6 5.2E-13 1.1E-17 175.5 33.4 134 1408-1547 424-564 (655)
103 PRK13104 secA preprotein trans 99.6 2.1E-13 4.5E-18 180.2 27.2 129 1408-1546 426-592 (896)
104 PRK09694 helicase Cas3; Provis 99.6 1.2E-13 2.7E-18 184.9 25.3 110 1413-1526 548-665 (878)
105 PRK05298 excinuclease ABC subu 99.6 5.9E-12 1.3E-16 166.2 37.6 124 1408-1537 428-556 (652)
106 PRK12906 secA preprotein trans 99.6 4.2E-13 9.2E-18 176.6 26.7 119 1409-1532 423-549 (796)
107 COG4889 Predicted helicase [Ge 99.5 2.8E-14 6E-19 180.6 14.2 159 1089-1252 160-350 (1518)
108 KOG0351 ATP-dependent DNA heli 99.5 7E-14 1.5E-18 187.0 18.9 310 1089-1533 263-589 (941)
109 smart00487 DEXDc DEAD-like hel 99.5 1.3E-13 2.9E-18 149.7 14.5 167 1088-1262 6-180 (201)
110 PRK12904 preprotein translocas 99.5 3E-12 6.6E-17 169.3 29.7 119 1409-1532 413-569 (830)
111 PRK11131 ATP-dependent RNA hel 99.5 7.8E-13 1.7E-17 180.6 24.6 108 1425-1540 285-413 (1294)
112 COG1197 Mfd Transcription-repa 99.5 5E-12 1.1E-16 168.9 30.9 309 1089-1537 593-912 (1139)
113 KOG0337 ATP-dependent RNA heli 99.5 2.9E-13 6.4E-18 163.7 14.8 326 1074-1539 35-369 (529)
114 PRK13107 preprotein translocas 99.5 1.2E-11 2.5E-16 163.6 30.4 120 1408-1532 431-587 (908)
115 KOG0352 ATP-dependent DNA heli 99.5 1.8E-12 3.9E-17 156.4 19.0 324 1093-1533 23-359 (641)
116 cd00046 DEXDc DEAD-like helica 99.4 4.5E-13 9.8E-18 137.4 12.0 138 1111-1252 2-144 (144)
117 COG4098 comFA Superfamily II D 99.4 2E-11 4.4E-16 145.5 27.0 310 1088-1536 95-414 (441)
118 PF00271 Helicase_C: Helicase 99.4 1.2E-13 2.7E-18 134.2 6.9 78 1444-1524 1-78 (78)
119 TIGR01967 DEAH_box_HrpA ATP-de 99.4 2.7E-12 5.9E-17 175.9 21.9 108 1425-1540 278-406 (1283)
120 PRK12900 secA preprotein trans 99.4 2.2E-11 4.8E-16 161.5 27.7 128 1409-1546 581-716 (1025)
121 KOG0353 ATP-dependent DNA heli 99.4 1.7E-11 3.7E-16 145.7 22.1 316 1089-1534 93-465 (695)
122 COG1202 Superfamily II helicas 99.4 7.3E-12 1.6E-16 155.4 19.8 316 1089-1538 215-553 (830)
123 KOG0952 DNA/RNA helicase MER3/ 99.4 3.4E-11 7.3E-16 157.4 23.1 324 1091-1539 111-492 (1230)
124 PRK12899 secA preprotein trans 99.3 3.1E-10 6.7E-15 150.6 30.4 128 1409-1546 551-686 (970)
125 smart00490 HELICc helicase sup 99.3 3.8E-12 8.2E-17 122.0 7.9 81 1441-1524 2-82 (82)
126 PF00270 DEAD: DEAD/DEAH box h 99.3 1.4E-11 3E-16 134.1 13.1 158 1093-1258 2-167 (169)
127 cd00268 DEADc DEAD-box helicas 99.3 2.4E-11 5.3E-16 137.1 14.9 157 1090-1253 21-185 (203)
128 COG1203 CRISPR-associated heli 99.3 1.7E-10 3.7E-15 154.4 24.6 353 1089-1558 194-572 (733)
129 TIGR01407 dinG_rel DnaQ family 99.2 2.6E-09 5.6E-14 145.4 31.3 89 1414-1508 661-756 (850)
130 PRK12326 preprotein translocas 99.2 6.9E-09 1.5E-13 135.6 30.9 131 1408-1548 409-554 (764)
131 COG0556 UvrB Helicase subunit 99.2 6.1E-09 1.3E-13 130.1 28.5 135 1411-1549 431-570 (663)
132 PRK13103 secA preprotein trans 99.1 8.6E-09 1.9E-13 137.2 27.5 120 1408-1532 431-587 (913)
133 KOG0329 ATP-dependent RNA heli 99.1 2.6E-10 5.7E-15 131.5 11.2 128 1093-1227 67-198 (387)
134 KOG0349 Putative DEAD-box RNA 99.0 1.1E-09 2.4E-14 132.6 12.2 96 1426-1524 505-603 (725)
135 KOG0947 Cytoplasmic exosomal R 99.0 9.5E-08 2.1E-12 124.9 28.6 366 1088-1537 295-722 (1248)
136 PRK12903 secA preprotein trans 99.0 8.5E-08 1.8E-12 127.0 28.4 119 1408-1532 408-535 (925)
137 COG1110 Reverse gyrase [DNA re 98.9 1.2E-07 2.5E-12 125.5 26.6 321 1088-1507 80-416 (1187)
138 PF11496 HDA2-3: Class II hist 98.9 8.4E-09 1.8E-13 125.3 15.2 206 1335-1548 4-255 (297)
139 KOG0951 RNA helicase BRR2, DEA 98.9 2.1E-08 4.5E-13 133.2 19.6 178 1082-1272 301-502 (1674)
140 COG4581 Superfamily II RNA hel 98.9 2.1E-08 4.6E-13 135.1 19.3 161 1087-1284 116-282 (1041)
141 COG0610 Type I site-specific r 98.9 4.5E-08 9.8E-13 134.3 21.1 144 1109-1259 273-420 (962)
142 TIGR00604 rad3 DNA repair heli 98.8 1.6E-07 3.4E-12 126.2 23.4 76 1086-1161 6-82 (705)
143 PRK07246 bifunctional ATP-depe 98.8 3.5E-07 7.6E-12 124.3 26.3 93 1412-1510 633-728 (820)
144 PRK08074 bifunctional ATP-depe 98.8 1.6E-06 3.6E-11 119.5 33.0 96 1413-1511 738-839 (928)
145 TIGR00596 rad1 DNA repair prot 98.8 6.7E-08 1.5E-12 129.9 16.7 77 1190-1267 7-89 (814)
146 PRK12901 secA preprotein trans 98.7 2.4E-05 5.2E-10 105.8 38.0 120 1408-1532 610-737 (1112)
147 COG1198 PriA Primosomal protei 98.7 2.8E-07 6.2E-12 122.3 18.7 371 1089-1537 197-604 (730)
148 TIGR03117 cas_csf4 CRISPR-asso 98.7 1E-05 2.2E-10 107.0 32.5 78 1095-1173 2-85 (636)
149 COG1199 DinG Rad3-related DNA 98.6 5.8E-06 1.3E-10 110.3 26.7 104 1423-1531 476-612 (654)
150 CHL00122 secA preprotein trans 98.6 9.1E-06 2E-10 108.9 27.6 83 1409-1495 407-490 (870)
151 COG1643 HrpA HrpA-like helicas 98.6 3E-06 6.4E-11 114.3 22.2 110 1426-1541 259-390 (845)
152 PRK11747 dinG ATP-dependent DN 98.5 2.5E-05 5.4E-10 105.3 30.1 92 1412-1510 520-619 (697)
153 PRK12902 secA preprotein trans 98.5 4E-05 8.6E-10 102.9 30.3 83 1409-1495 422-505 (939)
154 KOG1513 Nuclear helicase MOP-3 98.5 2.2E-06 4.8E-11 110.3 17.4 89 1470-1561 851-947 (1300)
155 KOG0948 Nuclear exosomal RNA h 98.5 1.4E-06 2.9E-11 112.3 14.8 155 1089-1284 128-288 (1041)
156 KOG0920 ATP-dependent RNA heli 98.4 1.3E-05 2.8E-10 108.2 22.7 126 1411-1542 396-548 (924)
157 PF13872 AAA_34: P-loop contai 98.4 1.6E-06 3.4E-11 105.3 12.4 160 1087-1254 34-222 (303)
158 KOG0949 Predicted helicase, DE 98.3 0.00019 4.1E-09 95.4 28.9 165 1089-1265 510-682 (1330)
159 KOG0922 DEAH-box RNA helicase 98.3 5.4E-05 1.2E-09 98.4 22.0 112 1427-1541 259-393 (674)
160 PRK15483 type III restriction- 98.2 1E-05 2.2E-10 109.9 15.1 172 1110-1288 60-278 (986)
161 PF14619 SnAC: Snf2-ATP coupli 98.2 6.1E-07 1.3E-11 89.2 2.2 61 1642-1714 14-74 (74)
162 KOG0924 mRNA splicing factor A 98.2 2.3E-05 5E-10 100.5 15.9 90 1450-1545 597-704 (1042)
163 PF02399 Herpes_ori_bp: Origin 98.2 4.4E-05 9.5E-10 101.7 18.9 112 1411-1533 268-385 (824)
164 KOG0950 DNA polymerase theta/e 98.1 3.7E-05 8.1E-10 102.5 17.2 157 1090-1259 223-394 (1008)
165 KOG0923 mRNA splicing factor A 98.1 0.0012 2.5E-08 85.8 29.0 81 1451-1539 507-607 (902)
166 KOG0926 DEAH-box RNA helicase 98.0 2.3E-05 4.9E-10 102.0 10.6 79 1453-1537 607-703 (1172)
167 PF07652 Flavi_DEAD: Flaviviru 98.0 1.8E-05 4E-10 87.7 8.5 128 1109-1252 4-136 (148)
168 smart00488 DEXDc2 DEAD-like he 97.9 7.8E-05 1.7E-09 91.1 12.6 74 1089-1162 7-84 (289)
169 smart00489 DEXDc3 DEAD-like he 97.9 7.8E-05 1.7E-09 91.1 12.6 74 1089-1162 7-84 (289)
170 COG0653 SecA Preprotein transl 97.9 0.0015 3.3E-08 88.0 24.5 114 1408-1526 411-535 (822)
171 TIGR02562 cas3_yersinia CRISPR 97.8 0.0018 3.9E-08 88.8 25.3 48 1478-1528 837-884 (1110)
172 PF13871 Helicase_C_4: Helicas 97.6 0.00012 2.6E-09 88.9 8.1 92 1467-1561 52-151 (278)
173 PF13086 AAA_11: AAA domain; P 97.6 0.00071 1.5E-08 77.3 13.4 68 1090-1161 1-75 (236)
174 KOG4150 Predicted ATP-dependen 97.6 0.0005 1.1E-08 87.1 12.6 132 1408-1544 507-646 (1034)
175 KOG0953 Mitochondrial RNA heli 97.5 0.0003 6.5E-09 89.8 9.5 101 1424-1528 356-466 (700)
176 PF07529 HSA: HSA; InterPro: 97.3 0.00048 1E-08 67.9 7.0 70 914-983 4-73 (73)
177 PRK10536 hypothetical protein; 97.3 0.00035 7.5E-09 84.2 6.2 144 1091-1257 60-217 (262)
178 COG0553 HepA Superfamily II DN 97.2 0.00077 1.7E-08 92.0 9.3 183 1089-1274 83-289 (866)
179 smart00573 HSA domain in helic 97.1 0.0015 3.4E-08 65.1 7.7 68 915-982 5-72 (73)
180 COG3587 Restriction endonuclea 97.0 0.0026 5.6E-08 84.9 10.2 166 1106-1288 71-269 (985)
181 PF02562 PhoH: PhoH-like prote 97.0 0.0034 7.4E-08 73.8 10.1 146 1092-1258 6-161 (205)
182 PF07517 SecA_DEAD: SecA DEAD- 96.6 0.024 5.2E-07 69.3 13.6 122 1088-1226 75-209 (266)
183 KOG0925 mRNA splicing factor A 96.4 0.045 9.8E-07 69.9 14.6 110 1426-1541 253-390 (699)
184 PF13307 Helicase_C_2: Helicas 96.3 0.0076 1.6E-07 68.4 7.1 79 1423-1508 6-92 (167)
185 PRK14873 primosome assembly pr 96.3 0.023 5E-07 77.0 12.4 123 1119-1252 170-303 (665)
186 PF09848 DUF2075: Uncharacteri 96.3 0.011 2.3E-07 74.4 8.8 92 1112-1228 4-97 (352)
187 KOG1802 RNA helicase nonsense 96.2 0.019 4.1E-07 75.2 10.3 76 1089-1172 409-485 (935)
188 PF13604 AAA_30: AAA domain; P 96.2 0.038 8.3E-07 64.4 12.0 127 1090-1254 1-132 (196)
189 PF13892 DBINO: DNA-binding do 95.9 0.16 3.4E-06 56.9 14.4 73 944-1020 62-134 (139)
190 KOG1132 Helicase of the DEAD s 95.7 0.063 1.4E-06 72.8 12.2 40 1089-1128 20-59 (945)
191 KOG1131 RNA polymerase II tran 95.6 0.038 8.1E-07 71.0 9.4 69 1081-1149 7-75 (755)
192 PRK07764 DNA polymerase III su 95.4 0.11 2.5E-06 72.0 13.5 42 1095-1136 20-64 (824)
193 PF13401 AAA_22: AAA domain; P 95.4 0.024 5.3E-07 60.2 5.6 115 1109-1252 4-125 (131)
194 TIGR00376 DNA helicase, putati 95.3 0.13 2.8E-06 69.9 13.5 68 1088-1161 155-223 (637)
195 KOG0442 Structure-specific end 95.3 0.33 7.1E-06 66.0 16.6 139 1090-1246 13-154 (892)
196 cd00009 AAA The AAA+ (ATPases 95.3 0.076 1.7E-06 55.5 9.0 56 1097-1155 5-62 (151)
197 KOG1803 DNA helicase [Replicat 95.2 0.052 1.1E-06 71.3 8.6 65 1088-1158 183-248 (649)
198 TIGR01448 recD_rel helicase, p 94.4 0.22 4.7E-06 68.6 12.2 134 1088-1254 321-454 (720)
199 KOG1133 Helicase of the DEAD s 94.4 1.2 2.5E-05 60.0 17.8 82 1427-1509 630-721 (821)
200 TIGR01447 recD exodeoxyribonuc 94.0 0.23 5E-06 66.9 10.9 141 1093-1254 148-297 (586)
201 COG3421 Uncharacterized protei 93.2 0.054 1.2E-06 70.7 2.8 106 1116-1226 4-124 (812)
202 PRK10875 recD exonuclease V su 93.0 0.4 8.8E-06 64.9 10.6 143 1091-1254 153-303 (615)
203 PRK07003 DNA polymerase III su 93.0 0.24 5.3E-06 67.6 8.4 41 1095-1135 21-64 (830)
204 PHA03247 large tegument protei 92.9 21 0.00046 54.6 26.8 271 1737-2027 2711-2984(3151)
205 COG1875 NYN ribonuclease and A 92.8 0.26 5.6E-06 62.3 7.8 145 1092-1254 230-389 (436)
206 PRK12323 DNA polymerase III su 92.8 0.36 7.7E-06 65.3 9.6 41 1095-1135 21-64 (700)
207 PRK14949 DNA polymerase III su 92.7 0.26 5.7E-06 68.3 8.3 42 1095-1136 21-65 (944)
208 PLN03025 replication factor C 92.6 0.7 1.5E-05 57.7 11.4 41 1095-1135 18-60 (319)
209 PRK14956 DNA polymerase III su 92.5 0.29 6.3E-06 64.3 8.1 41 1095-1135 23-66 (484)
210 TIGR02881 spore_V_K stage V sp 92.3 0.3 6.6E-06 59.2 7.5 27 1110-1136 43-69 (261)
211 PRK12723 flagellar biosynthesi 92.2 2.6 5.6E-05 54.7 15.8 152 1110-1289 175-345 (388)
212 PRK04296 thymidine kinase; Pro 91.8 0.3 6.5E-06 56.8 6.3 34 1112-1148 5-38 (190)
213 KOG0951 RNA helicase BRR2, DEA 91.5 0.31 6.8E-06 68.1 6.8 109 1105-1229 1155-1268(1674)
214 PRK09112 DNA polymerase III su 91.4 0.8 1.7E-05 58.4 10.1 41 1095-1135 28-71 (351)
215 PF13177 DNA_pol3_delta2: DNA 91.4 1.4 3.1E-05 50.2 11.1 142 1095-1261 2-150 (162)
216 smart00382 AAA ATPases associa 91.3 0.26 5.6E-06 50.9 4.6 44 1109-1155 2-45 (148)
217 PRK06835 DNA replication prote 91.3 18 0.0004 46.2 21.5 48 1089-1136 159-210 (329)
218 PHA03247 large tegument protei 91.1 71 0.0015 49.6 28.7 302 1719-2027 2590-2926(3151)
219 KOG1805 DNA replication helica 90.9 0.69 1.5E-05 63.9 9.0 124 1090-1226 669-808 (1100)
220 PRK12402 replication factor C 90.8 0.59 1.3E-05 57.8 7.9 41 1095-1135 20-62 (337)
221 smart00492 HELICc3 helicase su 90.7 1.2 2.7E-05 49.9 9.5 50 1460-1511 31-83 (141)
222 PRK07994 DNA polymerase III su 90.5 1.2 2.6E-05 60.8 10.9 42 1095-1136 21-65 (647)
223 PRK08181 transposase; Validate 90.4 1.8 3.8E-05 53.6 11.3 46 1091-1136 88-133 (269)
224 smart00491 HELICc2 helicase su 90.2 1.1 2.4E-05 50.4 8.6 46 1463-1508 31-80 (142)
225 KOG1029 Endocytic adaptor prot 89.8 12 0.00025 51.2 18.1 26 430-455 113-138 (1118)
226 PRK06526 transposase; Provisio 89.8 0.9 1.9E-05 55.6 8.1 36 1097-1136 90-125 (254)
227 TIGR03420 DnaA_homol_Hda DnaA 89.4 1.7 3.7E-05 50.9 9.8 28 1108-1135 37-64 (226)
228 PRK14086 dnaA chromosomal repl 88.6 16 0.00035 50.1 18.9 99 1112-1252 317-419 (617)
229 PRK08691 DNA polymerase III su 88.4 2.3 5E-05 58.4 11.1 41 1095-1135 21-64 (709)
230 PRK07952 DNA replication prote 88.3 3.7 8E-05 50.2 11.8 43 1111-1160 101-143 (244)
231 PRK14961 DNA polymerase III su 87.8 2.4 5.1E-05 54.2 10.3 40 1095-1134 21-63 (363)
232 PRK08116 hypothetical protein; 87.6 3.7 8E-05 50.6 11.4 42 1109-1153 114-155 (268)
233 PRK08769 DNA polymerase III su 87.5 2.6 5.6E-05 53.4 10.1 49 1089-1137 3-54 (319)
234 CHL00181 cbbX CbbX; Provisiona 87.3 0.72 1.6E-05 57.2 5.2 39 1109-1147 59-98 (287)
235 PRK14951 DNA polymerase III su 87.1 1.7 3.6E-05 59.3 8.7 42 1095-1136 21-65 (618)
236 PRK14960 DNA polymerase III su 87.0 1.3 2.8E-05 60.4 7.5 41 1095-1135 20-63 (702)
237 PRK14952 DNA polymerase III su 86.9 2 4.4E-05 58.2 9.3 42 1095-1136 18-62 (584)
238 PRK14958 DNA polymerase III su 86.9 2.5 5.4E-05 56.5 10.0 42 1095-1136 21-65 (509)
239 PRK05707 DNA polymerase III su 86.8 2.2 4.7E-05 54.1 9.0 48 1090-1137 3-50 (328)
240 PTZ00112 origin recognition co 86.8 4.2 9.1E-05 56.9 12.0 52 1081-1135 752-807 (1164)
241 TIGR02880 cbbX_cfxQ probable R 86.7 0.72 1.6E-05 57.1 4.7 39 1109-1147 58-97 (284)
242 PRK14963 DNA polymerase III su 86.6 1.7 3.7E-05 57.9 8.4 43 1095-1137 19-64 (504)
243 PRK14957 DNA polymerase III su 86.5 2.4 5.3E-05 57.0 9.7 41 1095-1135 21-64 (546)
244 TIGR02768 TraA_Ti Ti-type conj 86.4 3.5 7.5E-05 57.6 11.4 61 1088-1154 350-410 (744)
245 KOG0989 Replication factor C, 86.2 1.6 3.4E-05 54.6 7.1 42 1094-1135 40-83 (346)
246 PRK14962 DNA polymerase III su 86.1 1.3 2.9E-05 58.5 6.9 23 1112-1134 39-61 (472)
247 PF06733 DEAD_2: DEAD_2; Inte 86.0 0.43 9.3E-06 54.5 2.2 41 1188-1228 117-159 (174)
248 PF13173 AAA_14: AAA domain 86.0 2 4.3E-05 46.8 7.1 40 1214-1254 61-100 (128)
249 PHA02533 17 large terminase pr 86.0 9.2 0.0002 51.7 14.5 145 1089-1253 58-210 (534)
250 PHA02544 44 clamp loader, smal 85.9 3.4 7.4E-05 51.1 10.0 40 1214-1253 100-141 (316)
251 PRK05703 flhF flagellar biosyn 85.3 5.6 0.00012 52.2 11.9 55 1214-1269 299-359 (424)
252 KOG1029 Endocytic adaptor prot 85.3 31 0.00068 47.5 18.1 13 1889-1901 1021-1034(1118)
253 PRK06645 DNA polymerase III su 84.9 2.8 6.1E-05 56.0 9.1 42 1095-1136 26-70 (507)
254 PRK14948 DNA polymerase III su 84.8 3.5 7.5E-05 56.4 10.0 42 1095-1136 21-65 (620)
255 TIGR02928 orc1/cdc6 family rep 84.7 3.8 8.3E-05 51.6 9.8 46 1091-1136 19-67 (365)
256 PF00448 SRP54: SRP54-type pro 84.6 2.8 6.1E-05 49.5 8.0 131 1113-1267 5-140 (196)
257 PRK00440 rfc replication facto 84.6 5.7 0.00012 48.9 11.0 40 1095-1134 22-63 (319)
258 PF12340 DUF3638: Protein of u 84.2 1.4 3.1E-05 53.2 5.5 73 1088-1163 21-93 (229)
259 PRK07940 DNA polymerase III su 84.2 1.7 3.7E-05 56.3 6.6 42 1095-1136 10-63 (394)
260 PRK14964 DNA polymerase III su 84.0 4.3 9.4E-05 54.1 10.1 42 1095-1136 18-62 (491)
261 PRK08084 DNA replication initi 84.0 3.7 8E-05 49.5 8.8 40 1096-1135 30-71 (235)
262 PRK08451 DNA polymerase III su 84.0 3.5 7.5E-05 55.5 9.3 42 1095-1136 19-63 (535)
263 PRK08727 hypothetical protein; 83.9 6.4 0.00014 47.4 10.7 25 1112-1136 44-68 (233)
264 PRK00149 dnaA chromosomal repl 83.9 5.6 0.00012 52.3 11.0 43 1094-1136 129-175 (450)
265 PRK14950 DNA polymerase III su 83.7 3.2 7E-05 56.4 9.0 41 1095-1135 21-64 (585)
266 PRK09111 DNA polymerase III su 83.7 3.6 7.8E-05 56.0 9.4 42 1095-1136 29-73 (598)
267 TIGR00362 DnaA chromosomal rep 83.6 8 0.00017 50.1 12.2 25 1112-1136 139-163 (405)
268 TIGR03015 pepcterm_ATPase puta 83.6 3.3 7.2E-05 49.8 8.2 40 1093-1132 26-66 (269)
269 PRK13889 conjugal transfer rel 83.6 4.9 0.00011 57.5 10.9 128 1088-1254 344-472 (988)
270 PRK07471 DNA polymerase III su 83.3 3.2 7E-05 53.4 8.3 43 1095-1137 24-69 (365)
271 PRK14969 DNA polymerase III su 83.1 4.1 8.9E-05 54.8 9.5 41 1095-1135 21-64 (527)
272 KOG0579 Ste20-like serine/thre 83.0 1E+02 0.0022 42.4 20.9 26 983-1008 933-958 (1187)
273 KOG0921 Dosage compensation co 82.9 9.5 0.0002 53.0 12.4 138 1103-1252 387-535 (1282)
274 PF05876 Terminase_GpA: Phage 82.8 1 2.2E-05 60.7 3.8 164 1089-1264 15-191 (557)
275 COG0470 HolB ATPase involved i 82.2 2.3 4.9E-05 52.2 6.3 120 1112-1251 27-147 (325)
276 TIGR00595 priA primosomal prot 82.2 7.5 0.00016 52.1 11.3 95 1407-1505 6-101 (505)
277 PRK14965 DNA polymerase III su 82.2 4.8 0.0001 54.7 9.7 42 1095-1136 21-65 (576)
278 PF13245 AAA_19: Part of AAA d 81.9 4.1 8.9E-05 41.4 6.9 45 1110-1154 11-56 (76)
279 PRK12727 flagellar biosynthesi 81.8 28 0.00061 47.2 16.1 28 1109-1136 350-377 (559)
280 PF06862 DUF1253: Protein of u 81.3 17 0.00037 48.2 13.7 113 1409-1523 280-396 (442)
281 KOG0163 Myosin class VI heavy 81.2 2E+02 0.0043 40.3 22.7 36 845-880 798-833 (1259)
282 PRK06921 hypothetical protein; 81.1 6 0.00013 48.9 9.3 28 1109-1136 117-144 (266)
283 PRK04195 replication factor C 81.1 7.9 0.00017 51.4 11.0 25 1109-1133 39-63 (482)
284 PRK14959 DNA polymerase III su 81.0 5.4 0.00012 54.6 9.4 41 1095-1135 21-64 (624)
285 PRK10917 ATP-dependent DNA hel 80.9 23 0.0005 49.3 15.6 93 1408-1503 292-389 (681)
286 PRK00411 cdc6 cell division co 80.7 7.6 0.00016 49.6 10.3 46 1092-1137 35-83 (394)
287 PRK06871 DNA polymerase III su 80.6 4.6 0.0001 51.3 8.2 48 1090-1137 2-52 (325)
288 KOG0991 Replication factor C, 80.3 2.6 5.6E-05 51.0 5.5 28 1108-1135 47-74 (333)
289 PRK05580 primosome assembly pr 80.1 10 0.00022 52.6 11.9 96 1407-1506 171-267 (679)
290 PRK14088 dnaA chromosomal repl 79.8 18 0.00039 47.8 13.5 36 1111-1147 132-167 (440)
291 PRK14087 dnaA chromosomal repl 79.7 7.5 0.00016 51.4 10.0 40 1112-1152 144-183 (450)
292 PRK08058 DNA polymerase III su 79.7 6.4 0.00014 49.9 9.1 136 1093-1251 9-148 (329)
293 PHA03333 putative ATPase subun 79.5 13 0.00029 51.2 12.1 148 1093-1253 172-332 (752)
294 PRK14955 DNA polymerase III su 79.4 11 0.00023 49.1 11.1 41 1095-1135 21-64 (397)
295 PRK05563 DNA polymerase III su 79.2 14 0.0003 50.3 12.4 42 1095-1136 21-65 (559)
296 PRK07993 DNA polymerase III su 78.7 7.6 0.00017 49.5 9.3 48 1090-1137 2-52 (334)
297 PRK00080 ruvB Holliday junctio 78.4 15 0.00033 46.3 11.8 51 1083-1133 21-75 (328)
298 PTZ00266 NIMA-related protein 78.1 21 0.00045 51.6 13.9 42 461-502 114-160 (1021)
299 PRK14974 cell division protein 78.1 16 0.00034 47.0 11.7 35 1111-1148 142-176 (336)
300 PRK14722 flhF flagellar biosyn 77.9 13 0.00028 48.3 11.1 125 1108-1262 136-267 (374)
301 PRK06090 DNA polymerase III su 77.9 7.4 0.00016 49.4 8.8 48 1090-1137 3-53 (319)
302 KOG1924 RhoA GTPase effector D 77.3 18 0.00038 49.8 12.0 29 1091-1119 205-235 (1102)
303 cd01124 KaiC KaiC is a circadi 77.3 6.4 0.00014 44.6 7.4 48 1112-1162 2-49 (187)
304 PRK04132 replication factor C 76.9 63 0.0014 46.2 17.8 49 1214-1262 630-679 (846)
305 PF00580 UvrD-helicase: UvrD/R 76.9 5.3 0.00011 48.5 7.0 56 1091-1152 1-57 (315)
306 PRK12724 flagellar biosynthesi 76.5 56 0.0012 43.4 16.1 56 1212-1267 297-359 (432)
307 PF05621 TniB: Bacterial TniB 76.3 11 0.00024 47.6 9.5 44 1209-1252 140-189 (302)
308 PRK12377 putative replication 75.9 23 0.00049 43.7 11.9 27 1110-1136 102-128 (248)
309 PRK06893 DNA replication initi 75.6 13 0.00028 44.8 9.6 25 1112-1136 42-66 (229)
310 PRK06647 DNA polymerase III su 75.5 5.4 0.00012 54.1 7.1 42 1095-1136 21-65 (563)
311 cd01120 RecA-like_NTPases RecA 75.2 7.8 0.00017 42.1 7.1 34 1113-1149 3-36 (165)
312 PRK13342 recombination factor 74.6 9.9 0.00022 49.5 9.0 21 1111-1131 38-58 (413)
313 PRK14953 DNA polymerase III su 74.0 8.4 0.00018 51.5 8.2 40 1095-1134 21-63 (486)
314 PRK10865 protein disaggregatio 73.8 10 0.00022 54.0 9.3 40 1095-1134 183-224 (857)
315 PHA03372 DNA packaging termina 73.6 4.3 9.2E-05 54.8 5.3 110 1105-1228 199-313 (668)
316 COG1200 RecG RecG-like helicas 73.4 65 0.0014 44.7 15.9 91 1409-1503 294-390 (677)
317 PRK08903 DnaA regulatory inact 73.3 17 0.00036 43.3 9.7 27 1109-1135 42-68 (227)
318 PRK05642 DNA replication initi 72.8 17 0.00038 43.9 9.8 37 1215-1251 98-138 (234)
319 PF00004 AAA: ATPase family as 72.5 11 0.00023 40.1 7.1 36 1113-1154 2-37 (132)
320 PRK12726 flagellar biosynthesi 72.3 78 0.0017 41.8 15.7 46 1111-1159 208-257 (407)
321 PRK12422 chromosomal replicati 71.9 13 0.00028 49.3 9.1 25 1111-1135 143-167 (445)
322 PRK06964 DNA polymerase III su 71.9 16 0.00035 46.9 9.7 47 1091-1137 2-49 (342)
323 PF00308 Bac_DnaA: Bacterial d 71.8 32 0.0007 41.3 11.6 37 1214-1250 97-137 (219)
324 PRK11889 flhF flagellar biosyn 71.4 29 0.00063 45.7 11.7 25 1111-1135 243-267 (436)
325 PRK06305 DNA polymerase III su 71.2 9.5 0.00021 50.5 7.7 42 1095-1136 22-66 (451)
326 PRK09183 transposase/IS protei 71.0 9.7 0.00021 46.8 7.3 28 1108-1135 101-128 (259)
327 PRK14954 DNA polymerase III su 70.8 12 0.00026 51.5 8.7 41 1095-1135 21-64 (620)
328 PHA03368 DNA packaging termina 70.7 6.4 0.00014 53.8 6.0 104 1112-1228 257-366 (738)
329 PRK07133 DNA polymerase III su 70.6 10 0.00022 52.8 7.9 42 1095-1136 23-67 (725)
330 TIGR02639 ClpA ATP-dependent C 69.6 14 0.00031 51.7 9.2 40 1096-1135 188-229 (731)
331 PRK07399 DNA polymerase III su 69.3 25 0.00055 44.6 10.5 43 1095-1137 9-54 (314)
332 KOG1924 RhoA GTPase effector D 69.3 17 0.00037 49.9 9.2 14 2155-2168 784-797 (1102)
333 KOG2543 Origin recognition com 69.1 46 0.001 43.5 12.5 145 1089-1253 8-159 (438)
334 KOG0952 DNA/RNA helicase MER3/ 69.1 4.4 9.5E-05 57.0 4.0 115 1106-1229 940-1061(1230)
335 PRK05896 DNA polymerase III su 69.0 19 0.00041 49.4 9.8 42 1095-1136 21-65 (605)
336 TIGR02974 phageshock_pspF psp 68.6 47 0.001 42.5 12.7 53 1100-1155 13-65 (329)
337 cd01121 Sms Sms (bacterial rad 67.8 19 0.00041 46.7 9.2 47 1112-1161 85-131 (372)
338 CHL00095 clpC Clp protease ATP 67.3 14 0.00031 52.2 8.6 26 1109-1134 200-225 (821)
339 PF04364 DNA_pol3_chi: DNA pol 67.1 61 0.0013 36.6 11.8 108 1412-1551 15-126 (137)
340 cd01122 GP4d_helicase GP4d_hel 66.8 34 0.00074 41.6 10.7 50 1108-1159 29-78 (271)
341 PF08880 QLQ: QLQ; InterPro: 66.8 4.2 9E-05 36.7 2.1 28 460-487 1-29 (37)
342 TIGR03346 chaperone_ClpB ATP-d 66.7 16 0.00035 51.9 9.0 40 1095-1134 178-219 (852)
343 PRK13826 Dtr system oriT relax 66.4 27 0.00059 50.9 10.9 128 1089-1255 380-508 (1102)
344 TIGR01817 nifA Nif-specific re 66.2 47 0.001 44.9 12.7 47 1106-1155 216-262 (534)
345 PF13191 AAA_16: AAA ATPase do 66.2 16 0.00035 41.0 7.3 45 1092-1136 5-51 (185)
346 PRK06995 flhF flagellar biosyn 66.0 55 0.0012 44.2 12.9 25 1113-1137 260-284 (484)
347 TIGR00678 holB DNA polymerase 65.9 19 0.00041 41.6 7.9 25 1112-1136 17-41 (188)
348 KOG0386 Chromatin remodeling c 65.0 1.3E+02 0.0029 43.3 16.2 72 801-874 128-199 (1157)
349 COG1484 DnaC DNA replication p 63.9 21 0.00046 44.0 8.1 62 1095-1159 91-152 (254)
350 TIGR02397 dnaX_nterm DNA polym 63.6 27 0.00057 44.1 9.2 42 1095-1136 19-63 (355)
351 COG3267 ExeA Type II secretory 62.0 32 0.00069 42.8 8.9 46 1111-1160 53-104 (269)
352 PRK10923 glnG nitrogen regulat 61.8 54 0.0012 43.2 11.9 48 1105-1155 157-204 (469)
353 TIGR00643 recG ATP-dependent D 61.4 37 0.0008 46.9 10.6 93 1408-1503 266-363 (630)
354 TIGR00763 lon ATP-dependent pr 61.2 5.2E+02 0.011 37.1 21.6 23 1111-1133 349-371 (775)
355 COG1419 FlhF Flagellar GTP-bin 60.3 2.5E+02 0.0053 37.5 16.7 54 1214-1269 281-340 (407)
356 PRK14721 flhF flagellar biosyn 60.1 78 0.0017 42.1 12.6 75 1214-1289 269-359 (420)
357 PRK05728 DNA polymerase III su 60.1 1.2E+02 0.0026 34.7 12.5 111 1408-1551 11-125 (142)
358 PF01443 Viral_helicase1: Vira 59.5 10 0.00022 44.6 4.3 41 1213-1256 61-101 (234)
359 PRK14873 primosome assembly pr 59.1 38 0.00081 47.3 10.0 95 1408-1506 170-266 (665)
360 PRK08699 DNA polymerase III su 58.9 36 0.00079 43.5 9.2 47 1091-1137 2-49 (325)
361 PTZ00266 NIMA-related protein 58.7 87 0.0019 45.7 13.5 25 1544-1568 871-895 (1021)
362 TIGR00708 cobA cob(I)alamin ad 58.5 16 0.00035 42.9 5.6 56 1209-1267 92-151 (173)
363 PHA02244 ATPase-like protein 58.4 35 0.00077 44.5 8.9 38 1104-1147 114-151 (383)
364 PF07015 VirC1: VirC1 protein; 57.8 38 0.00083 41.6 8.6 40 1118-1160 11-52 (231)
365 COG1702 PhoH Phosphate starvat 57.6 9.7 0.00021 48.6 3.8 43 1214-1258 243-285 (348)
366 TIGR02640 gas_vesic_GvpN gas v 57.2 26 0.00056 43.1 7.3 49 1093-1147 5-53 (262)
367 PRK06321 replicative DNA helic 56.9 3E+02 0.0066 37.3 17.4 60 1098-1159 215-274 (472)
368 PF13481 AAA_25: AAA domain; P 56.2 39 0.00085 38.8 8.2 55 1109-1163 32-93 (193)
369 PRK11823 DNA repair protein Ra 56.1 37 0.00081 45.1 9.0 48 1112-1162 83-130 (446)
370 cd00984 DnaB_C DnaB helicase C 55.2 32 0.00069 41.1 7.5 38 1110-1149 14-51 (242)
371 KOG0780 Signal recognition par 55.0 32 0.0007 44.8 7.6 94 1113-1230 105-199 (483)
372 PF03354 Terminase_1: Phage Te 55.0 27 0.00058 46.6 7.5 133 1093-1238 1-145 (477)
373 TIGR02903 spore_lon_C ATP-depe 54.7 71 0.0015 44.3 11.5 22 1109-1130 175-196 (615)
374 PRK06646 DNA polymerase III su 54.7 1.3E+02 0.0028 35.1 11.7 82 1407-1508 10-95 (154)
375 KOG0739 AAA+-type ATPase [Post 54.6 5.7E+02 0.012 33.2 17.6 47 1111-1163 168-214 (439)
376 PRK11034 clpA ATP-dependent Cl 54.4 30 0.00065 48.9 8.0 27 1109-1135 207-233 (758)
377 COG1474 CDC6 Cdc6-related prot 54.2 82 0.0018 41.1 11.3 51 1090-1140 20-73 (366)
378 PRK05022 anaerobic nitric oxid 53.8 1E+02 0.0022 41.8 12.4 43 1106-1151 207-249 (509)
379 cd01128 rho_factor Transcripti 53.7 20 0.00042 44.3 5.5 28 1098-1126 6-33 (249)
380 PRK05636 replicative DNA helic 53.6 2.6E+02 0.0057 38.2 16.1 46 1111-1158 267-312 (505)
381 PF05496 RuvB_N: Holliday junc 53.3 51 0.0011 40.6 8.6 19 1111-1129 52-70 (233)
382 PF01695 IstB_IS21: IstB-like 53.3 25 0.00055 41.1 6.1 47 1107-1160 45-91 (178)
383 PRK06904 replicative DNA helic 53.3 80 0.0017 42.5 11.3 61 1098-1160 210-270 (472)
384 TIGR03689 pup_AAA proteasome A 53.1 26 0.00056 47.4 6.8 26 1109-1134 216-241 (512)
385 PRK14971 DNA polymerase III su 52.8 65 0.0014 44.6 10.7 40 1095-1134 22-64 (614)
386 TIGR01243 CDC48 AAA family ATP 52.1 48 0.001 46.6 9.5 37 1109-1151 212-248 (733)
387 PRK13709 conjugal transfer nic 52.0 56 0.0012 49.9 10.5 63 1089-1153 966-1029(1747)
388 TIGR00580 mfd transcription-re 51.8 65 0.0014 46.6 10.7 93 1408-1503 482-579 (926)
389 CHL00176 ftsH cell division pr 51.5 81 0.0018 44.0 11.2 24 1109-1132 216-239 (638)
390 PRK11054 helD DNA helicase IV; 51.3 31 0.00067 48.2 7.4 64 1089-1158 195-259 (684)
391 PF12846 AAA_10: AAA-like doma 50.4 29 0.00062 41.9 6.2 45 1110-1157 2-46 (304)
392 PRK07276 DNA polymerase III su 50.4 69 0.0015 40.6 9.5 47 1090-1137 2-50 (290)
393 PRK11608 pspF phage shock prot 50.0 83 0.0018 40.2 10.3 51 1097-1150 17-67 (326)
394 PRK05986 cob(I)alamin adenolsy 49.9 57 0.0012 39.1 8.2 134 1109-1267 22-169 (191)
395 PHA00012 I assembly protein 49.1 42 0.00092 43.2 7.4 24 1113-1136 5-28 (361)
396 PRK09376 rho transcription ter 48.9 42 0.0009 44.3 7.5 29 1106-1134 166-194 (416)
397 PRK13851 type IV secretion sys 48.9 85 0.0019 40.7 10.2 129 1100-1265 153-281 (344)
398 PRK10867 signal recognition pa 48.3 74 0.0016 42.4 9.8 25 1112-1136 103-127 (433)
399 COG3972 Superfamily I DNA and 47.8 59 0.0013 43.6 8.4 36 1118-1154 185-220 (660)
400 PRK09165 replicative DNA helic 47.2 99 0.0021 41.9 10.8 119 1109-1228 217-355 (497)
401 CHL00206 ycf2 Ycf2; Provisiona 47.1 39 0.00084 51.4 7.4 41 1109-1155 1630-1670(2281)
402 TIGR03600 phage_DnaB phage rep 46.5 1.1E+02 0.0024 40.2 11.0 58 1099-1158 184-241 (421)
403 PTZ00121 MAEBL; Provisional 46.5 1.5E+03 0.032 35.1 21.4 195 809-1022 1567-1780(2084)
404 COG2812 DnaX DNA polymerase II 46.5 23 0.0005 47.8 4.9 41 1095-1135 21-64 (515)
405 TIGR03345 VI_ClpV1 type VI sec 46.3 92 0.002 44.8 10.9 69 1095-1163 192-272 (852)
406 PRK13833 conjugal transfer pro 46.3 39 0.00085 43.3 6.7 44 1088-1134 126-169 (323)
407 PRK14712 conjugal transfer nic 45.6 56 0.0012 49.5 8.8 63 1090-1154 835-898 (1623)
408 COG2256 MGS1 ATPase related to 45.4 37 0.0008 44.5 6.2 21 1110-1130 49-69 (436)
409 TIGR00767 rho transcription te 45.4 62 0.0013 42.8 8.2 26 1107-1132 166-191 (415)
410 PRK11361 acetoacetate metaboli 45.3 1.3E+02 0.0028 39.6 11.3 54 1099-1155 156-209 (457)
411 PRK14970 DNA polymerase III su 45.2 57 0.0012 41.8 7.9 40 1095-1134 22-64 (367)
412 TIGR00416 sms DNA repair prote 45.1 63 0.0014 43.2 8.5 48 1112-1162 97-144 (454)
413 PRK05564 DNA polymerase III su 45.1 58 0.0013 41.0 7.9 41 1095-1135 9-52 (313)
414 PTZ00293 thymidine kinase; Pro 44.9 22 0.00048 43.0 4.0 35 1113-1150 8-42 (211)
415 COG0464 SpoVK ATPases of the A 44.8 30 0.00066 46.0 5.7 48 1109-1162 276-323 (494)
416 PRK10689 transcription-repair 44.8 1E+02 0.0023 45.7 11.2 93 1408-1503 631-728 (1147)
417 COG3973 Superfamily I DNA and 44.0 46 0.00099 45.5 6.8 45 1112-1156 229-276 (747)
418 PRK05748 replicative DNA helic 44.0 1.2E+02 0.0027 40.2 10.9 61 1097-1159 191-251 (448)
419 TIGR02915 PEP_resp_reg putativ 43.9 2.4E+02 0.0052 37.1 13.4 47 1106-1155 159-205 (445)
420 TIGR00682 lpxK tetraacyldisacc 43.7 70 0.0015 40.9 8.3 103 1118-1228 39-153 (311)
421 PRK13341 recombination factor 43.7 82 0.0018 44.5 9.6 23 1110-1132 53-75 (725)
422 TIGR02639 ClpA ATP-dependent C 43.6 1.2E+02 0.0027 42.8 11.4 22 1112-1133 487-508 (731)
423 cd03115 SRP The signal recogni 43.1 1.9E+02 0.0041 33.1 10.8 25 1112-1136 3-27 (173)
424 PRK10919 ATP-dependent DNA hel 43.1 29 0.00062 48.3 5.2 57 1090-1152 2-59 (672)
425 COG1198 PriA Primosomal protei 42.9 50 0.0011 46.4 7.3 81 1406-1489 225-306 (730)
426 TIGR01241 FtsH_fam ATP-depende 42.8 49 0.0011 44.4 7.1 23 1110-1132 89-111 (495)
427 PF03796 DnaB_C: DnaB-like hel 42.7 49 0.0011 40.4 6.5 42 1111-1154 21-62 (259)
428 PRK08506 replicative DNA helic 42.5 1.5E+02 0.0033 39.9 11.5 59 1098-1159 181-239 (472)
429 TIGR02329 propionate_PrpR prop 42.5 1.1E+02 0.0024 41.8 10.2 53 1104-1159 230-283 (526)
430 COG0552 FtsY Signal recognitio 41.8 69 0.0015 41.3 7.7 127 1110-1260 139-277 (340)
431 PRK15424 propionate catabolism 41.7 97 0.0021 42.4 9.5 53 1106-1158 239-297 (538)
432 KOG0737 AAA+-type ATPase [Post 41.6 40 0.00087 43.8 5.6 48 1108-1161 126-173 (386)
433 PTZ00332 paraflagellar rod pro 41.6 1.1E+03 0.024 32.3 19.5 44 914-957 352-398 (589)
434 KOG0734 AAA+-type ATPase conta 41.5 1.3E+02 0.0028 41.0 10.1 150 1109-1265 337-515 (752)
435 PRK10263 DNA translocase FtsK; 41.3 72 0.0015 47.3 8.5 42 1109-1150 1010-1052(1355)
436 PRK06731 flhF flagellar biosyn 41.1 2.4E+02 0.0053 35.6 12.1 47 1109-1158 75-125 (270)
437 COG0541 Ffh Signal recognition 40.9 63 0.0014 42.9 7.3 91 1113-1227 104-195 (451)
438 KOG0579 Ste20-like serine/thre 40.9 1.3E+03 0.028 32.9 20.4 41 977-1018 1095-1135(1187)
439 PRK10416 signal recognition pa 40.7 1.6E+02 0.0034 37.8 10.7 32 1113-1147 118-149 (318)
440 PRK13894 conjugal transfer ATP 40.6 55 0.0012 41.9 6.7 43 1089-1134 131-173 (319)
441 PRK07004 replicative DNA helic 40.4 95 0.0021 41.6 9.1 50 1108-1159 212-261 (460)
442 COG0593 DnaA ATPase involved i 40.2 84 0.0018 41.6 8.3 60 1112-1173 116-183 (408)
443 PF05127 Helicase_RecD: Helica 40.1 15 0.00033 43.2 1.7 120 1114-1252 2-123 (177)
444 PF00265 TK: Thymidine kinase; 39.9 81 0.0018 37.2 7.4 34 1113-1149 5-38 (176)
445 cd01129 PulE-GspE PulE/GspE Th 39.9 1.3E+02 0.0027 37.6 9.5 44 1089-1134 62-105 (264)
446 PRK00771 signal recognition pa 39.8 80 0.0017 42.2 8.2 26 1110-1135 96-121 (437)
447 PF02606 LpxK: Tetraacyldisacc 39.4 1.3E+02 0.0027 38.9 9.6 125 1119-1254 47-190 (326)
448 TIGR01243 CDC48 AAA family ATP 39.3 38 0.00082 47.6 5.5 41 1109-1155 487-527 (733)
449 PRK08760 replicative DNA helic 39.0 1.4E+02 0.003 40.4 10.2 53 1108-1162 228-280 (476)
450 TIGR03499 FlhF flagellar biosy 38.8 1.1E+02 0.0024 38.3 8.9 27 1110-1136 195-221 (282)
451 CHL00195 ycf46 Ycf46; Provisio 38.6 54 0.0012 44.3 6.5 38 1109-1152 259-296 (489)
452 TIGR01425 SRP54_euk signal rec 38.5 1.9E+02 0.0042 38.7 11.2 32 1113-1147 104-135 (429)
453 KOG0731 AAA+-type ATPase conta 38.5 92 0.002 44.1 8.6 126 1091-1229 333-487 (774)
454 PRK15115 response regulator Gl 38.3 1.9E+02 0.0041 38.0 11.2 46 1107-1155 155-200 (444)
455 PF09726 Macoilin: Transmembra 38.0 1.4E+03 0.03 32.9 19.6 9 997-1005 602-610 (697)
456 PF05970 PIF1: PIF1-like helic 37.9 65 0.0014 41.7 6.9 60 1090-1152 1-62 (364)
457 PF00437 T2SE: Type II/IV secr 37.9 41 0.00089 41.1 4.9 34 1100-1133 118-151 (270)
458 PRK13900 type IV secretion sys 37.9 64 0.0014 41.5 6.7 35 1099-1133 150-184 (332)
459 PRK11773 uvrD DNA-dependent he 37.5 60 0.0013 45.6 7.0 57 1090-1152 9-66 (721)
460 PRK05342 clpX ATP-dependent pr 37.4 76 0.0016 42.0 7.4 23 1110-1132 109-131 (412)
461 TIGR01074 rep ATP-dependent DN 37.3 56 0.0012 45.2 6.6 65 1091-1161 2-68 (664)
462 TIGR01075 uvrD DNA helicase II 37.2 55 0.0012 45.9 6.5 57 1090-1152 4-61 (715)
463 COG4626 Phage terminase-like p 36.9 2.4E+02 0.0052 38.8 11.7 170 1089-1274 60-249 (546)
464 TIGR00665 DnaB replicative DNA 36.8 1.5E+02 0.0034 39.0 10.1 49 1109-1159 195-243 (434)
465 KOG2412 Nuclear-export-signal 36.7 1.4E+03 0.03 31.9 18.1 17 765-781 61-77 (591)
466 KOG4364 Chromatin assembly fac 36.7 7.4E+02 0.016 34.9 15.7 13 953-965 303-315 (811)
467 PRK08840 replicative DNA helic 36.3 1.9E+02 0.0042 38.9 10.9 59 1099-1159 207-265 (464)
468 TIGR03819 heli_sec_ATPase heli 36.2 1.9E+02 0.004 37.6 10.4 128 1101-1264 170-297 (340)
469 KOG0577 Serine/threonine prote 36.1 1.5E+03 0.032 32.2 18.0 136 892-1028 492-652 (948)
470 PRK08939 primosomal protein Dn 35.8 86 0.0019 39.9 7.3 39 1098-1136 143-183 (306)
471 TIGR02782 TrbB_P P-type conjug 35.7 62 0.0014 40.9 6.1 35 1100-1134 123-157 (299)
472 TIGR02760 TraI_TIGR conjugativ 35.6 2.1E+02 0.0046 44.9 12.4 64 1086-1154 425-488 (1960)
473 TIGR01547 phage_term_2 phage t 35.5 47 0.001 43.0 5.1 37 1113-1149 5-41 (396)
474 PRK07773 replicative DNA helic 35.3 3.1E+02 0.0068 39.9 13.4 62 1097-1160 205-266 (886)
475 cd00561 CobA_CobO_BtuR ATP:cor 35.3 1.2E+02 0.0027 35.4 7.9 55 1209-1266 90-148 (159)
476 PRK14723 flhF flagellar biosyn 34.9 1.5E+02 0.0032 42.4 9.7 24 1113-1136 189-212 (767)
477 PHA00350 putative assembly pro 34.4 66 0.0014 42.5 6.1 17 1113-1129 5-21 (399)
478 KOG1807 Helicases [Replication 34.3 69 0.0015 44.8 6.3 68 1089-1160 377-448 (1025)
479 PTZ00436 60S ribosomal protein 34.3 8.9E+02 0.019 31.3 14.9 32 806-837 14-47 (357)
480 COG2255 RuvB Holliday junction 34.1 49 0.0011 41.9 4.6 27 1214-1240 103-130 (332)
481 TIGR03345 VI_ClpV1 type VI sec 33.9 1.6E+03 0.036 32.9 19.8 23 1112-1134 599-621 (852)
482 TIGR02785 addA_Gpos recombinat 33.5 78 0.0017 47.3 7.3 122 1091-1225 2-126 (1232)
483 PRK12608 transcription termina 33.5 1.6E+02 0.0034 39.0 9.1 41 1095-1136 120-160 (380)
484 PF06745 KaiC: KaiC; InterPro 33.4 94 0.002 37.0 6.8 51 1111-1163 21-71 (226)
485 TIGR02688 conserved hypothetic 33.3 96 0.0021 41.4 7.2 58 1094-1157 194-252 (449)
486 KOG1265 Phospholipase C [Lipid 32.9 1E+03 0.022 34.7 16.4 17 479-495 760-776 (1189)
487 TIGR00959 ffh signal recogniti 32.8 1.6E+02 0.0035 39.4 9.2 24 1111-1134 101-124 (428)
488 cd00268 DEADc DEAD-box helicas 32.6 5.8E+02 0.013 29.6 12.9 60 1408-1467 46-114 (203)
489 PRK08006 replicative DNA helic 32.5 2.3E+02 0.0051 38.3 10.8 60 1099-1160 214-273 (471)
490 COG4098 comFA Superfamily II D 32.5 1.3E+02 0.0027 39.2 7.7 95 1126-1227 291-386 (441)
491 PRK15429 formate hydrogenlyase 32.3 2.4E+02 0.0053 39.6 11.3 44 1104-1150 394-437 (686)
492 TIGR00365 monothiol glutaredox 32.2 2.6E+02 0.0056 29.9 9.0 49 1426-1474 11-65 (97)
493 PRK06620 hypothetical protein; 32.1 1.1E+02 0.0025 36.8 7.2 100 1144-1252 18-122 (214)
494 PF01935 DUF87: Domain of unkn 31.9 68 0.0015 38.2 5.3 39 1109-1150 24-62 (229)
495 COG1435 Tdk Thymidine kinase [ 31.2 75 0.0016 38.4 5.3 34 1113-1149 8-41 (201)
496 PRK10865 protein disaggregatio 31.2 2E+03 0.042 32.1 20.6 23 1112-1134 601-623 (857)
497 PF06068 TIP49: TIP49 C-termin 30.3 89 0.0019 41.1 6.1 53 1095-1151 32-88 (398)
498 COG0467 RAD55 RecA-superfamily 30.0 1.1E+02 0.0025 37.4 6.9 58 1106-1166 20-77 (260)
499 PF03237 Terminase_6: Terminas 29.8 78 0.0017 39.2 5.5 136 1113-1257 1-142 (384)
500 PRK05973 replicative DNA helic 29.5 1E+02 0.0022 38.0 6.4 61 1099-1162 54-114 (237)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.1e-151 Score=1420.08 Aligned_cols=857 Identities=47% Similarity=0.769 Sum_probs=750.3
Q ss_pred chhHHHHH--HHHHHHHHHHHHHHhhhccCCCcChhhHhhHHHHHHhccCcHHHHHHHHHHHHHhhcccccch-hhhhhh
Q 000047 816 VEQNWILK--QQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDM-DRLKSY 892 (2693)
Q Consensus 816 ~~~~~il~--~~k~kqrI~~rl~eLke~~s~~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~vl~~~~~~~~~~~-~~~~~~ 892 (2693)
++++|++. +..+..+|..+++++...+....+ ..|++|++|+++|+|+.+|++||..++.++....+.+. ...+.|
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~~-~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~ 206 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLMG-ELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF 206 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcchH-HHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence 44444444 334566777777777776665433 57999999999999999999999999998665433221 223455
Q ss_pred hhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHH
Q 000047 893 KKHR--HGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKI 970 (2693)
Q Consensus 893 k~~~--~~r~~k~~e~~e~k~k~e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~ 970 (2693)
++.+ ..+.++.+|+||++++.|++++.|.++.+|+..++.|.+++.++++..+.+..+++++++.||.+.||++++++
T Consensus 207 ~R~~~q~~~~~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~ 286 (1157)
T KOG0386|consen 207 KRGKRQTLSEARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRI 286 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5542 24567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhcccccccc
Q 000047 971 DRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMASHFENEMDETQTVSVVEKYEPAVE 1050 (2693)
Q Consensus 971 er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~~~k~~~~~~e~e~de~~~~sv~E~~e~a~e 1050 (2693)
+|++|+|+.+||.+|+|+|++|+|++|++||++||+||++|+++|+..|..++....+.. .+.+...+.... .
T Consensus 287 ~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~~~~~~---~~~d~~~i~~~a----k 359 (1157)
T KOG0386|consen 287 DRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSENPDAN---SASDISGISGSA----K 359 (1157)
T ss_pred HHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhccccccc---hhhhhhhhhhhh----c
Confidence 999999999999999999999999999999999999999999999999998875211111 111111111111 1
Q ss_pred cccchhHHhHHHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHH
Q 000047 1051 NEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI 1130 (2693)
Q Consensus 1051 ~ede~~~~k~~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALI 1130 (2693)
++++ +..+...+||.++|.|+|.+.+||.++.||+|++||+.||+||++||+|++|||||||||||||||+|++|
T Consensus 360 --~~~~---d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi 434 (1157)
T KOG0386|consen 360 --ADVD---DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI 434 (1157)
T ss_pred --chhh---hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH
Confidence 1111 14567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc
Q 000047 1131 CYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL 1210 (2693)
Q Consensus 1131 a~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L 1210 (2693)
+||++.+...||+|||||+++|.||..||.+|+|++..+.|.|++..|..+.. .+..++|+|++|||+++++ |+..|
T Consensus 435 tYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~-qir~gKFnVLlTtyEyiik--dk~lL 511 (1157)
T KOG0386|consen 435 TYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTK-QQRHGKFNVLLTTYEYIIK--DKALL 511 (1157)
T ss_pred HHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHH-HHhcccceeeeeeHHHhcC--CHHHH
Confidence 99999999999999999999999999999999999999999999999987754 5667999999999999999 88999
Q ss_pred cccCccEEEEccccccccccchHHHHHH-hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCC
Q 000047 1211 SKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESN 1289 (2693)
Q Consensus 1211 ~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~ 1289 (2693)
.+++|.||||||+|||||+.|++...|. .|.+.+||||||||+||++.|||+|||||.|.||+++..|.+||+.||...
T Consensus 512 sKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFant 591 (1157)
T KOG0386|consen 512 SKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANT 591 (1157)
T ss_pred hccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhc
Confidence 9999999999999999999999999998 789999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-----CCC
Q 000047 1290 GDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-----GNS 1364 (2693)
Q Consensus 1290 g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-----~~s 1364 (2693)
| .+.++++++.+++|+|||+|||||+|||+|++|+.+||+|++.+++|.||++|+.+|+++....... +..
T Consensus 592 G----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~ 667 (1157)
T KOG0386|consen 592 G----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKK 667 (1157)
T ss_pred C----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccc
Confidence 8 3478899999999999999999999999999999999999999999999999999999998654333 445
Q ss_pred CCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC-ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH
Q 000047 1365 KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL-PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME 1443 (2693)
Q Consensus 1365 k~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l-~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILe 1443 (2693)
..+.++|.+|+||+||||||+|....+.+. .++. ..+++.||||++|+++|++|+++|||||+|||||.++++|+
T Consensus 668 g~k~L~N~imqLRKiCNHP~lf~~ve~~~~----~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimE 743 (1157)
T KOG0386|consen 668 GYKPLFNTIMQLRKLCNHPYLFANVENSYT----LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILE 743 (1157)
T ss_pred cchhhhhHhHHHHHhcCCchhhhhhccccc----cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHH
Confidence 567899999999999999999965433332 3333 48999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1444 d~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
+||..++|+|+||||+|+.++|..+++.||.++++||+||+||+|||+|||||.||+||+||++|||+++.||.+|||||
T Consensus 744 dyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahri 823 (1157)
T KOG0386|consen 744 DYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 823 (1157)
T ss_pred HHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCcccCCCCHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHH
Q 000047 1524 GQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLA 1603 (2693)
Q Consensus 1524 GQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~fD~~ss~eE~~elLe~LLee~~~eE~~evlDDeeLndLLa 1603 (2693)
||+++|+|+||++.+++||+|++++.+|++++.+||++|.||++++.++++++|+.+++....++..++.+++.||++|+
T Consensus 824 gq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~la 903 (1157)
T KOG0386|consen 824 GQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLA 903 (1157)
T ss_pred hchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888777789999999999999
Q ss_pred hChhHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhHHHHH-HHHhhccCCCCCCCCCCcccccccc
Q 000047 1604 RSESEIDVFESVDKQRREEEMATWRKLIRGLGTDGEPLPPLPSRLVTDDDLKAL-YEAMKIYDAPKTGVSPNVGVKRKGE 1682 (2693)
Q Consensus 1604 RseeEle~Fe~~D~er~eee~~~w~~~~~g~g~d~~~l~~~p~rl~~~~El~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1682 (2693)
|+++|+++|++||.+++.++-.. +.+.|++++.|++++ |.... +.++..
T Consensus 904 rseeE~~~f~~md~~r~~~e~~~----------------~~k~rl~ee~e~p~~i~~~~~-------------~~~~~~- 953 (1157)
T KOG0386|consen 904 RSEEEFELFHKMDEERRATENQQ----------------EKKPRLVEEAELPADIYKRDQ-------------GVERLS- 953 (1157)
T ss_pred cchHHHHHHHHhhHHHHhhhhhc----------------cccchhhhhhhcHHHHHhcch-------------hhhhhh-
Confidence 99999999999999987644221 114689999999854 43211 101111
Q ss_pred ccccccccccCCCccccccccccccCCHHHHHHHhhccCCCChhh
Q 000047 1683 HLGALDTQHYGRGKRAREVRSYEEQWTEEEFEKMCQAESSDSPKL 1727 (2693)
Q Consensus 1683 ~~~~~~~~~~GRG~r~rk~~~Y~d~~te~q~lk~~~~~~~d~~~~ 1727 (2693)
.+.......|||.|+|+.++|.|.|||+||++.++.+..+..+.
T Consensus 954 -~~~~~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~~~~ 997 (1157)
T KOG0386|consen 954 -EEEEEEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKEDSEE 997 (1157)
T ss_pred -hhhhhhccccccccccceeecccccchhhhhhhccccccccchh
Confidence 11112223799999999999999999999999998876555443
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.9e-108 Score=1011.77 Aligned_cols=511 Identities=47% Similarity=0.787 Sum_probs=452.9
Q ss_pred ccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1076 KESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1076 kEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+....+|.++.++.||+||++|++||+++|.++.|||||||||||||+|+|+++.||....+..||||||||.+++.||
T Consensus 153 ~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW 232 (971)
T KOG0385|consen 153 QNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNW 232 (971)
T ss_pred hccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHH
Confidence 33344589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHH
Q 000047 1156 ESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNA 1235 (2693)
Q Consensus 1156 ~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsr 1235 (2693)
..||.+|+|++.+++|+|+..+|..+.+..+..+.|+||||||+.+++ ++..|..+.|.|+||||||||||..|++++
T Consensus 233 ~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~--dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 233 MNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIK--DKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHh--hHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 999999999999999999999999988887888899999999999999 678999999999999999999999999999
Q ss_pred HHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1236 DLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1236 aLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
.|+.|.+.+||||||||+||||.|||+|||||.|.+|++.+.|..||..... +.+...+.+||.+|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~--------------~~~~e~v~~Lh~vL 376 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC--------------EGDQELVSRLHKVL 376 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc--------------ccCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999975311 11223688999999
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHH-hhccC---CCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN-LGSIG---NSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~-l~si~---~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
+||+|||+|.+|+..||+|.|.+++|.|+..|+..|+.+... +.... ......++|++|+||+||||||||...+.
T Consensus 377 ~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 377 RPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred hHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 999999999999999999999999999999999999987543 32222 22346799999999999999999976221
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
-.+......++..||||.+|+++|++|++.||||||||||+.++|||++|+.+++|.|+||||+|+.++|...|+.
T Consensus 457 ----g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 457 ----GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred ----CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 1233345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
||.+++..|||||||+|||+||||.+||+||+||+||||++++||++|||||||+|.|+|||||+++||||+|++|+..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCcccCCCCHHHHHHHHHHHHHHHhhh---ccCCCCCHHHHHHHHHhChh
Q 000047 1552 LGVANQSITAGFFDNNTSAEDRREYLESLLRECKKE---EAAPVLDDDALNDLLARSES 1607 (2693)
Q Consensus 1552 l~Li~kVIqaG~fD~~ss~eE~~elLe~LLee~~~e---E~~evlDDeeLndLLaRsee 1607 (2693)
+.|.+.||+.|.....-+.......+..+++..... -......+ +|..+|.+.+.
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEE 670 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhh
Confidence 999999999995443333223333344454433221 11122233 88888888664
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6e-98 Score=930.01 Aligned_cols=522 Identities=42% Similarity=0.729 Sum_probs=443.0
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
..|..| .|.||+||+.||.||+.||++++|||||||||||||||+|+|++||...++++||+|||||++++.||..||+
T Consensus 607 pvPsLL-rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLL-RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHH-HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 445544 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1161 FWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1161 KwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+|||+++++.|+|...+|+...+.|...+-||||||+|..+.. |...|...+|.|+||||||+|||+.+++|++|..|
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~q--d~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnf 763 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQ--DLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNF 763 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHh--HHHHHHhhccceeehhhhhhhcchhHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999988 55689999999999999999999999999999999
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
++.+||||||||+||++.|||+|++||+|.+|.+.+.|..||..|+......+ .+.....+.|||++|+||+|
T Consensus 764 nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs-------qeyn~klV~RLHkVlrPfiL 836 (1958)
T KOG0391|consen 764 NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS-------QEYNHKLVIRLHKVLRPFIL 836 (1958)
T ss_pred chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc-------hhhchHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999987543322 22334578899999999999
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh---ccCCCCCcchhHHHHHHHHhhCCccccchhh-------
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG---SIGNSKGRSVHNSVMELRNICNHPYLSQLHA------- 1390 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~---si~~sk~rslln~LmqLRKICnHPyL~~~~~------- 1390 (2693)
||+|.||+++||.|.|++++|.|+..|+.||+.+...-. .+...+..+++|++|+||++||||.||...-
T Consensus 837 RRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~ 916 (1958)
T KOG0391|consen 837 RRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVA 916 (1958)
T ss_pred HHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCccccc
Confidence 999999999999999999999999999999998854332 2333455678999999999999997642100
Q ss_pred --------------------------------------------------------------------------------
Q 000047 1391 -------------------------------------------------------------------------------- 1390 (2693)
Q Consensus 1391 -------------------------------------------------------------------------------- 1390 (2693)
T Consensus 917 e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa 996 (1958)
T KOG0391|consen 917 EPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAA 996 (1958)
T ss_pred CceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccchh
Confidence
Q ss_pred -------hh--------------------------------hh-----------------------------cc------
Q 000047 1391 -------EE--------------------------------VD-----------------------------TL------ 1396 (2693)
Q Consensus 1391 -------EE--------------------------------id-----------------------------~l------ 1396 (2693)
++ .+ .+
T Consensus 997 ~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p 1076 (1958)
T KOG0391|consen 997 SATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGP 1076 (1958)
T ss_pred cccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCC
Confidence 00 00 00
Q ss_pred ----C--------------------------------------CCCCCC-------------------------------
Q 000047 1397 ----I--------------------------------------PKHYLP------------------------------- 1403 (2693)
Q Consensus 1397 ----i--------------------------------------~~~~l~------------------------------- 1403 (2693)
+ +..+..
T Consensus 1077 ~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~ 1156 (1958)
T KOG0391|consen 1077 VVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLR 1156 (1958)
T ss_pred cceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhh
Confidence 0 000000
Q ss_pred --------------------------------------------------------------------------------
Q 000047 1404 -------------------------------------------------------------------------------- 1403 (2693)
Q Consensus 1404 -------------------------------------------------------------------------------- 1403 (2693)
T Consensus 1157 ~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~ 1236 (1958)
T KOG0391|consen 1157 ICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYF 1236 (1958)
T ss_pred hhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhcccc
Confidence
Q ss_pred -----------------hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Q 000047 1404 -----------------PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1404 -----------------~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq 1466 (2693)
-+...|||++.|.-+|.+|+..|||||||+||+.|+|+|+.||.++||-|+||||+++.++|+
T Consensus 1237 ~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQ 1316 (1958)
T KOG0391|consen 1237 QQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQ 1316 (1958)
T ss_pred chhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHH
Confidence 001246899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
.++++||. |..+||||+||+.||+||||+.||||||||.||||.++.||++|||||||+++|+|||||.+.||||+|+.
T Consensus 1317 aLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLk 1395 (1958)
T KOG0391|consen 1317 ALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILK 1395 (1958)
T ss_pred HHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHh
Confidence 99999976 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCcccCCC-CHHHHHHHHHHHHHHH-h----hhccCCCCCH-HHHHHHHHhChhHHHHHH
Q 000047 1547 SAEHKLGVANQSITAGFFDNNT-SAEDRREYLESLLREC-K----KEEAAPVLDD-DALNDLLARSESEIDVFE 1613 (2693)
Q Consensus 1547 raekKl~Li~kVIqaG~fD~~s-s~eE~~elLe~LLee~-~----~eE~~evlDD-eeLndLLaRseeEle~Fe 1613 (2693)
++..|..|.+.+|++|.|.... .....+++++.-+.+. . ..+..-+..+ ..+...|+..++|-++-.
T Consensus 1396 kanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~p~s~~~~~~~ad~~v~~see~~le~alA~aede~dV~A 1469 (1958)
T KOG0391|consen 1396 KANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYLPESDVGVPAKADEFVVASEEPSLEVALAPAEDEEDVEA 1469 (1958)
T ss_pred hhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCCccccCCCCccchhhhhhcCcchHHHHhhhhcchHHHHH
Confidence 9999999999999999775432 2222333333222111 0 0111112222 337788888777765543
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.7e-99 Score=963.99 Aligned_cols=505 Identities=45% Similarity=0.762 Sum_probs=451.1
Q ss_pred ccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1078 SVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1078 ev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
.+..||.++.|.+||+||++||+||+.+|.++.|||||||||||||||+|+||.||+......||||||||.+++.+|.+
T Consensus 358 Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ 437 (1373)
T KOG0384|consen 358 KLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWER 437 (1373)
T ss_pred HhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcC------CccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQ------KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC 1231 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~------kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS 1231 (2693)
||..|+ .+++++|+|+...|.-+........ +|+++||||+++.+ |+..|..++|.+++||||||+||..|
T Consensus 438 ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk--Dk~~L~~i~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 438 EFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK--DKAELSKIPWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc--cHhhhccCCcceeeecHHhhcCchHH
Confidence 999999 9999999999988876554443322 59999999999998 88999999999999999999999999
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
+++..|..|...+||||||||+||++.|||+|||||+|+.|.++.+|...|.. +....+..|
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc------------------hhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887732 223357889
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHH-HHhhccCC---CCCcchhHHHHHHHHhhCCccccc
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE-ENLGSIGN---SKGRSVHNSVMELRNICNHPYLSQ 1387 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Le-e~l~si~~---sk~rslln~LmqLRKICnHPyL~~ 1387 (2693)
|.+|+||||||+|+||++.||+|.|+++.++||..|+.+|+.|. +++..+.. .....++|++|+|++|||||||+.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~ 656 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIK 656 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccC
Confidence 99999999999999999999999999999999999999999875 44544332 223589999999999999999999
Q ss_pred hhhhhhhccCCC----CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHH
Q 000047 1388 LHAEEVDTLIPK----HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGG 1463 (2693)
Q Consensus 1388 ~~~EEid~li~~----~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~e 1463 (2693)
..++.+...+.. ..+..++..|||+.+|++||.+|++.||||||||||+.|||||++||..++|.|.||||++..+
T Consensus 657 gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrge 736 (1373)
T KOG0384|consen 657 GAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGE 736 (1373)
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchH
Confidence 877765544432 3566789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
-|+.+|+.||+++++.|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.||||||.+|+||.
T Consensus 737 lRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 737 LRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred HHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCcccC------CCCHHHHHHHHHHHHHHHh----hh-c-cCCCCCHHHHHHHHHhChh
Q 000047 1544 VRASAEHKLGVANQSITAGFFDN------NTSAEDRREYLESLLRECK----KE-E-AAPVLDDDALNDLLARSES 1607 (2693)
Q Consensus 1544 IleraekKl~Li~kVIqaG~fD~------~ss~eE~~elLe~LLee~~----~e-E-~~evlDDeeLndLLaRsee 1607 (2693)
|++++..|+.|++.||+.+.... ..+.+| |+.||+-.+ ++ + ....++..+|++||.|.+.
T Consensus 817 ilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E----LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 817 ILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEE----LSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHH----HHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 99999999999999999875422 223344 445554321 22 2 2235666789999998654
No 5
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=7.9e-95 Score=876.97 Aligned_cols=592 Identities=41% Similarity=0.683 Sum_probs=480.4
Q ss_pred HHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000047 947 RWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQEAKSMA 1026 (2693)
Q Consensus 947 ~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~~~k~~~ 1026 (2693)
+.++.-+.|.-|+++.||.++....+.+||-+++.|-+.|+.--+. ...+|.+||.||+-|-.+++++....-..+
T Consensus 404 rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEskR----QarklnfLltQTELySHFi~rK~d~n~se~ 479 (1185)
T KOG0388|consen 404 RAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESKR----QARKLNFLLTQTELYSHFIGRKNDCNLSEA 479 (1185)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhhcccCCcccc
Confidence 3456677788899999999999888899998888877666544332 356899999999999999998754321111
Q ss_pred hhcccccccccccchhcccccccccccchhH------------HhHHHHhhh-HHHHh-----------------hhccc
Q 000047 1027 SHFENEMDETQTVSVVEKYEPAVENEDESDQ------------AKHYLESNE-KYYLM-----------------AHSIK 1076 (2693)
Q Consensus 1027 ~~~e~e~de~~~~sv~E~~e~a~e~ede~~~------------~k~~~e~~~-~yy~l-----------------ah~ik 1076 (2693)
-..+ ....+..|. ....+.+++..+ +++.-.... .|-.. ...+.
T Consensus 480 lp~~-----~ne~sa~e~-n~~~d~eea~l~~~~lraAq~Av~a~~~t~afd~e~~~~~ntse~e~~e~e~n~q~~t~i~ 553 (1185)
T KOG0388|consen 480 LPAE-----RNEISAGEP-NGMKDYEEAMLQKLRLRAAQDAVSAKQITDAFDTEFGAERNTSEFEGPENEGNFQGPTNID 553 (1185)
T ss_pred CCcc-----cccccccCc-ccCCChHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhccccccccCccccccccCCcccc
Confidence 0000 001111110 000000000000 000000000 01000 01111
Q ss_pred -cccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1077 -ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1077 -Eev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
....+||.+|. ++|++||++||+||+.+|.++.|||||||||||||+|+|+++++|.+..+.+||||||+|.++|.||
T Consensus 554 ~t~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NW 632 (1185)
T KOG0388|consen 554 TTRTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNW 632 (1185)
T ss_pred ceeeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHH
Confidence 22347888876 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCcEEEEcCChHHHHHHHHhhh------hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1156 ESEINFWAPRIHKIVYCGPPEERRRLFKEKI------VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1156 ~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i------~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
..||.+|+|.++++.|.|+..+|+.+.+-+. ....|+||||||+.+.. |...|.+++|.|+|+|||+-||..
T Consensus 633 aqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt--Deky~qkvKWQYMILDEAQAIKSS 710 (1185)
T KOG0388|consen 633 AQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT--DEKYLQKVKWQYMILDEAQAIKSS 710 (1185)
T ss_pred HHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec--hHHHHHhhhhhheehhHHHHhhhh
Confidence 9999999999999999999999976654222 35689999999999987 667899999999999999999999
Q ss_pred cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHH
Q 000047 1230 SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIIN 1309 (2693)
Q Consensus 1230 sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~ 1309 (2693)
.|.+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|.+.++|.+||.+-|+....... .+ +...+.
T Consensus 711 sS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~---tl----neqqL~ 783 (1185)
T KOG0388|consen 711 SSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT---TL----NEQQLQ 783 (1185)
T ss_pred hhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC---Cc----CHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776543221 11 223478
Q ss_pred HHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1310 RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
|||.+|+||||||.|++|..+|-.|++..+.|.++-.|+.+|+.+...+... ...+++|+||++||||.||...
T Consensus 784 RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~------E~~~~vmQlrKVCNHPdLFer~ 857 (1185)
T KOG0388|consen 784 RLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSM------EMENLVMQLRKVCNHPDLFERL 857 (1185)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHH------HHHHHHHHHHHhcCChHHHhhc
Confidence 9999999999999999999999999999999999999999999998766532 2346999999999999875321
Q ss_pred hh---------------------------------h-h-----------------hc-----------------------
Q 000047 1390 AE---------------------------------E-V-----------------DT----------------------- 1395 (2693)
Q Consensus 1390 ~E---------------------------------E-i-----------------d~----------------------- 1395 (2693)
+. + + ..
T Consensus 858 e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~ 937 (1185)
T KOG0388|consen 858 EPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGY 937 (1185)
T ss_pred CCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCc
Confidence 00 0 0 00
Q ss_pred ---------------cC-CC-----------------------CC-----------------------------------
Q 000047 1396 ---------------LI-PK-----------------------HY----------------------------------- 1401 (2693)
Q Consensus 1396 ---------------li-~~-----------------------~~----------------------------------- 1401 (2693)
++ +. .|
T Consensus 938 ~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~ 1017 (1185)
T KOG0388|consen 938 VFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYV 1017 (1185)
T ss_pred ccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceec
Confidence 00 00 00
Q ss_pred --CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1402 --LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1402 --l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
...++..|||+..|+++|.+|++.|||||+|+||+.|+|+|++||..+||.|+||||+.+..+|..++..|+. +++
T Consensus 1018 Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdi 1095 (1185)
T KOG0388|consen 1018 PPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDI 1095 (1185)
T ss_pred CcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--Cce
Confidence 0012456799999999999999999999999999999999999999999999999999999999999999976 779
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
||||+||+|||+||||++||+|||||++|||..+.||++||||+||+++|+||||++.+||||+|++++.+|-.+...|+
T Consensus 1096 FvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388|consen 1096 FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred EEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccC
Q 000047 1560 TAGFFDN 1566 (2693)
Q Consensus 1560 qaG~fD~ 1566 (2693)
.++.|..
T Consensus 1176 ~G~~~qg 1182 (1185)
T KOG0388|consen 1176 HGNIFQG 1182 (1185)
T ss_pred cCCcccC
Confidence 8887654
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-87 Score=887.53 Aligned_cols=509 Identities=46% Similarity=0.795 Sum_probs=445.4
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
+..+|.++. ++|||||++||+||+.++.++.|||||||||||||+|+|+++.++.......+|+|||||.+++.||..|
T Consensus 159 l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 159 LLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred eccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 457898887 7999999999999999999999999999999999999999999998877788999999999999999999
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
|.+|+|.++++.|+|....|..+....+....|+||||||+.+.+ +...|..+.|++|||||||+|||..++++++++
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~--e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr 315 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIK--EKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHH--HHHHhccCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 999999999999999998887665555556789999999999988 456788999999999999999999999999999
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 316 ~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~--------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN--------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred HhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc--------------chHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999762110 1123577899999999
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh-hccC-CCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL-GSIG-NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l-~si~-~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
++||+|.+|...||++.+.+++|.|++.|+.+|+.+.... ..+. ......+++.+|+||++|+||||+.......
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~--- 458 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP--- 458 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC---
Confidence 9999999999999999999999999999999999875432 1111 1223468899999999999999986432111
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
+......++..++|+.+|+++|.++...|+||||||||+.++++|+++|..+|+.|++|||+++.++|+.+|+.||.++
T Consensus 459 -~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~ 537 (1033)
T PLN03142 459 -PYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPG 537 (1033)
T ss_pred -cccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhcccc
Confidence 1112245678899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~ 1556 (2693)
+..+||||||+|||+||||+.||+||+||+||||..++||+||||||||+++|+|||||+.+||||+|++++..|+.++.
T Consensus 538 s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~ 617 (1033)
T PLN03142 538 SEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDA 617 (1033)
T ss_pred CCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcccCC--CCHHHHHHHHHHHHHHHhh---hccCCCCCHHHHHHHHHhChhHHHHH
Q 000047 1557 QSITAGFFDNN--TSAEDRREYLESLLRECKK---EEAAPVLDDDALNDLLARSESEIDVF 1612 (2693)
Q Consensus 1557 kVIqaG~fD~~--ss~eE~~elLe~LLee~~~---eE~~evlDDeeLndLLaRseeEle~F 1612 (2693)
.||+.|.+... .+.++ |..|++.... ......+.+++|+.||+|+++....+
T Consensus 618 ~Vi~~g~~~~~~~~~~~e----L~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~~~ 674 (1033)
T PLN03142 618 LVIQQGRLAEQKTVNKDE----LLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 674 (1033)
T ss_pred HHHhcCcccccccCCHHH----HHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHHHH
Confidence 99998876543 33333 3344442211 22345689999999999998776533
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-88 Score=838.60 Aligned_cols=476 Identities=44% Similarity=0.702 Sum_probs=412.7
Q ss_pred cccCCCccC-CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1079 VSEQPTCLQ-GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1079 v~eqP~~L~-ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
+.+||..+. +.+|++||+.||+||.-+|+++.+||||||||||||||+|+|++||++.+. .||+|||||.+++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHH
Confidence 556888875 689999999999999999999999999999999999999999999988765 899999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhc--CCccEEEEcHHHHHhc-cCCCcccccCccEEEEccccccccccchHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVH--QKFNVLLTTYEYLMNK-HDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~--~kfdVVITTYE~Lik~-~Dr~~L~kikWd~VIIDEAHRIKN~sSKls 1234 (2693)
||.+|||.+++..|+|+..+|+.+.. .+.. .+|+|+||||..+... .|+..|...+|+|+|+||||.+||..|.+|
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~-~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy 544 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRE-RIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERY 544 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHH-HHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHH
Confidence 99999999999999999999987743 3332 3899999999988643 367789999999999999999999999999
Q ss_pred HHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCC-hhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS-SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S-~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+-|..+++.+||||||||+||||.|||+||.|++|.+|.+ .+++...|..--.. +.......+.++ .|.|-..
T Consensus 545 ~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~--d~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 545 KHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS--DGDIENALLSQE----RISRAKT 618 (941)
T ss_pred HHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc--cchhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999976 46677777653222 222233333333 4778889
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc----cCCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS----IGNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s----i~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
++.||+|||+|.+|.++||+|..++.+|+|+..|+.+|..+.+.+.. ........-.+.+|+||++++||.|++..
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~ 698 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSI 698 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHh
Confidence 99999999999999999999999999999999999999988766521 11111112256999999999999987532
Q ss_pred hh--hhh----ccC------------------------------------CCCCCChhhhcccHHHHHHHHHHHhhcCCC
Q 000047 1390 AE--EVD----TLI------------------------------------PKHYLPPIVRLCGKLEMLDRLLPKLKATDH 1427 (2693)
Q Consensus 1390 ~E--Eid----~li------------------------------------~~~~l~~Lvr~SgKLelLdeLL~kLkatGh 1427 (2693)
-. .+. .++ ....-...|-.|||+..|..+|++++..|+
T Consensus 699 Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~ 778 (941)
T KOG0389|consen 699 YTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGD 778 (941)
T ss_pred ccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCC
Confidence 11 000 000 001123567889999999999999999999
Q ss_pred eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC
Q 000047 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD 1507 (2693)
Q Consensus 1428 KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp 1507 (2693)
|||||||||.++|||+.+|..++|.|+||||+|...+|+.+|+.||. +.++||||+||+|||.||||+.||+||+||.+
T Consensus 779 RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 779 RVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred EEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeecC
Confidence 99999999999999999999999999999999999999999999975 56699999999999999999999999999999
Q ss_pred CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCc
Q 000047 1508 WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF 1563 (2693)
Q Consensus 1508 WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~ 1563 (2693)
+||..+.||.+||||+||+|+|+|||||+.+||||.|+++++.|+.|...+...+.
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999988887653
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.9e-86 Score=817.08 Aligned_cols=465 Identities=36% Similarity=0.638 Sum_probs=410.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|++||++||+||++||.++.||||+||||||||||+|+|+..|...+...+|.|||||.+++.||..||.+|+|.++|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 58999999999999999999999999999999999999999999998877779999999999999999999999999999
Q ss_pred EEEcCChHH----------HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH
Q 000047 1169 IVYCGPPEE----------RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1169 Ivy~Gs~~e----------Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
.+|+++... ...+..........+|+||||+.+.. ....+..+.|+|+|+||+|+|||.+++++.+++
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCccHHHHHHH
Confidence 999997652 11111122334567899999999987 445789999999999999999999999999999
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+++.+||+||||||||+|.|||+|++|+.|+.+++...|.+.|..||..++........ ....+.+...|+.+|+||
T Consensus 362 ki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~q--v~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 362 KIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQ--VQTAYKCAVALRDLISPY 439 (923)
T ss_pred hccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHH--HHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999998887654432 334455667899999999
Q ss_pred hhhhhHhHHhh-cCccceeEeeeccccHHHHHHHHHHHHH--hhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1319 VLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEEN--LGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1319 LLRRtKkDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~--l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+|||+|.+|.. .||.|.|++++|.|+++|+.+|.++... +..+.+. ....+..+.-||++||||.|+....+....
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng-~~~~l~Gi~iLrkICnHPdll~~~~~~~~~ 518 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG-KRNCLSGIDILRKICNHPDLLDRRDEDEKQ 518 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC-CccceechHHHHhhcCCcccccCccccccc
Confidence 99999999999 9999999999999999999999987543 2222222 234566788899999999998654321111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~-~rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
..-....+..|||+++|..+|..+...|+|||+|+|...|+|||+.+|. ..||.|+|+||.|+...|+.+|++||+
T Consensus 519 ---~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 519 ---GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ---CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC
Confidence 1111245788999999999999999999999999999999999999999 799999999999999999999999987
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~L 1554 (2693)
+. .++|||++|+|||+||||+.||.||||||+|||..+.||..||+||||+|+|.||||++.+||||+||.++-+|..|
T Consensus 596 ~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~L 674 (923)
T KOG0387|consen 596 DE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFL 674 (923)
T ss_pred CC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 55 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccC
Q 000047 1555 ANQSITAG 1562 (2693)
Q Consensus 1555 i~kVIqaG 1562 (2693)
.++++..-
T Consensus 675 tn~il~~p 682 (923)
T KOG0387|consen 675 TNRILKNP 682 (923)
T ss_pred HHHHhcCH
Confidence 99998654
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2.1e-79 Score=776.85 Aligned_cols=465 Identities=38% Similarity=0.662 Sum_probs=402.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+||.||++||+||..|+..+++|||||+||||||+|+|++++.-.... -...|.|||||.+|...|..|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 6899999999999999999999999999999999999999987533222 1345789999999999999999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
+|.++++.|.|.+..|..+.. ...+.+|+||+|+.+++ |...|.++.|.|+|+||+|-|||..++++++++.+++
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~---q~~~~~iiVtSYDv~Rn--D~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRD---QYKNANIIVTSYDVVRN--DVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRA 1128 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHh---hccccceEEeeHHHHHH--HHHHHHhcccceEEecCcceecchHHHHHHHHHHHhh
Confidence 999999999999999876643 23567999999999998 4568999999999999999999999999999999999
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.|||+|||||+|||+.|||+||+||+|+++++.+.|...|.+|+....+.... .-..+...+.+..||+.+-||+|||
T Consensus 1129 ~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~S--ske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1129 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSS--SKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccc--hhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876654322 2334566778999999999999999
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-----------CCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-----------GNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-----------~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
+|.||.++||+|+.+-++|+|++.|++||+.+....... .......++..+..||+.|+||.|......
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 999999999999999999999999999999987652110 000133577889999999999988643200
Q ss_pred -hhhccCC--CCCCC--hhhhcccHHHHHHHHHHHhh--------------cCCCeEEEEEcchHHHHHHHHHHhh---c
Q 000047 1392 -EVDTLIP--KHYLP--PIVRLCGKLEMLDRLLPKLK--------------ATDHRVLFFSTMTRLLDVMEDYLTF---K 1449 (2693)
Q Consensus 1392 -Eid~li~--~~~l~--~Lvr~SgKLelLdeLL~kLk--------------atGhKVLIFSQft~tLDILed~L~~---r 1449 (2693)
+...... .+... .-+..++|+.+|.++|.++- ..+||+|||||++.++|++++-|-. .
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0000000 00111 22678899999999998863 1479999999999999999998854 3
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+.|+||||++.+.+|++++++||++ .-+.|+|++|.+||+||||+.||||||++-||||..++||++||||||||+.|
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 57899999999999999999999864 44889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1530 LVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
.|||||+.||+||+|+..++.|+++++.||+.
T Consensus 1446 NVyRlItrGTLEEKVMgLQkFKmnvAntvInq 1477 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKFKMNVANTVINQ 1477 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHHhhHHHHHHHhc
Confidence 99999999999999999999999999999975
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-67 Score=670.95 Aligned_cols=472 Identities=32% Similarity=0.471 Sum_probs=393.1
Q ss_pred CCcchHHHHHHHHHHHHHhh------cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-----CCCEEEEecCchHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYN------NQLNGILADEMGLGKTVQVIALICYLMETKND-----RGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~------n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-----~gP~LIVVPtSLL~QW~ 1156 (2693)
...|||||++|++||..... +..|||+||+||+|||+|+|+||..+++..+. .+ .|||||.+|+.||+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k-~lVV~P~sLv~nWk 314 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINK-PLVVAPSSLVNNWK 314 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccc-cEEEccHHHHHHHH
Confidence 46899999999999976432 45678999999999999999999999999887 55 49999999999999
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHH----HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERR----RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk----~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s 1230 (2693)
.||.+|.. .+..+.+.|...... .++......-..-|+|.+|+.+.+ ....+....+++||+||+|++||..
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~--~~~~il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASD--YCRKILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHH--HHHHHhcCCCCeEEECCCCCccchh
Confidence 99999986 577777777665411 111111223346788999999986 3346788899999999999999999
Q ss_pred chHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHH
Q 000047 1231 CKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINR 1310 (2693)
Q Consensus 1231 SKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~R 1310 (2693)
++++++|..+.+++||+|||||+||++.|+|++|+|++|+++++...|...|..|+...++.......... ..-+.+
T Consensus 393 s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~---~~rl~e 469 (776)
T KOG0390|consen 393 SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER---EERLQE 469 (776)
T ss_pred hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887665433333222 223888
Q ss_pred HHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhh
Q 000047 1311 LHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHA 1390 (2693)
Q Consensus 1311 LhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~ 1390 (2693)
|..+...|++||+-..+.+.||.+.++++.|.+++.|..+|+.+.... .........+..+..|.++|+||+|.....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~--~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM--KMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH--HhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 999999999999999999999999999999999999999999997753 111112236777889999999999975221
Q ss_pred hhhh--cc-------CCC--CCCChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1391 EEVD--TL-------IPK--HYLPPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1391 EEid--~l-------i~~--~~l~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.... .. ... .........++|+..|+.+|...++ ...++++.++++.++++++..++++|+.+++|||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 1110 00 000 1111123357899999999865543 3456667778999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.|+..+|+.+|+.||++.+..||||+|++|||+||||..|++||+||++|||+.+.||++||+|.||+|+|+||||++.+
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccCcccCC
Q 000047 1539 TVEEQVRASAEHKLGVANQSITAGFFDNN 1567 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqaG~fD~~ 1567 (2693)
|+||+||+++.+|..|-..|++.......
T Consensus 708 tiEEk~~qrq~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 708 TIEEKIYQRQTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred CchHHHHHHHHHhhhhhheEEeccccccc
Confidence 99999999999999999999987644433
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.2e-66 Score=641.51 Aligned_cols=533 Identities=26% Similarity=0.395 Sum_probs=423.4
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhh---------cCCCeEEEcCCCCChHHHHHHHHHHHHH-hcCCCCCEEEEec
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYN---------NQLNGILADEMGLGKTVQVIALICYLME-TKNDRGPFLVVVP 1148 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~---------n~lnGILADEMGLGKTIQAIALIa~Lle-~k~~~gP~LIVVP 1148 (2693)
....+..|. .+|+|||..||+||+.... .+.|||||+-||||||+|+|+|++.++. .+.....+|||||
T Consensus 658 ~VqV~rslv-~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~P 736 (1567)
T KOG1015|consen 658 LVQVHRSLV-IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCP 736 (1567)
T ss_pred hhhccHhHH-hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcc
Confidence 334455554 6899999999999987532 4779999999999999999999987554 3445567999999
Q ss_pred CchHHHHHHHHHHHCCCCc------EEEE--cCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-------------C
Q 000047 1149 SSVLPGWESEINFWAPRIH------KIVY--CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-------------R 1207 (2693)
Q Consensus 1149 tSLL~QW~eEfeKwaPsLk------VIvy--~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-------------r 1207 (2693)
.+++.||..||.+|.+++. |..+ +-.+..|..++..|. ..-.|+|+-|++++.... .
T Consensus 737 lNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~--~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~ 814 (1567)
T KOG1015|consen 737 LNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQ--EDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFN 814 (1567)
T ss_pred hHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHH--hcCCEEEEehHHHHHHhcccchhhhHHHHHHH
Confidence 9999999999999998532 2211 223345555555544 455899999999864221 1
Q ss_pred CcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCccc
Q 000047 1208 PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE 1287 (2693)
Q Consensus 1208 ~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e 1287 (2693)
..|..-..|+|||||||.|||..+.++++|..+.+++||+|||||+||||.|+|.+++|+.|+++++..+|..+|..||.
T Consensus 815 k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~ 894 (1567)
T KOG1015|consen 815 KALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQ 894 (1567)
T ss_pred HhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccc
Confidence 23555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCC----
Q 000047 1288 SNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGN---- 1363 (2693)
Q Consensus 1288 ~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~---- 1363 (2693)
++...+.....+. ....-..-|+.+|..|+-|+-...+...||+|.+++|.+.|++.|..||..+.......+.
T Consensus 895 nGq~~dST~~DVr--~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg 972 (1567)
T KOG1015|consen 895 NGQCADSTMVDVR--VMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEG 972 (1567)
T ss_pred cCccCCCcHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCcccc
Confidence 9876654332221 1112234588999999999999999999999999999999999999999998774432222
Q ss_pred --CCCcchhHHHHHHHHhhCCccccchhhhh-----------hhccCC--------------------------------
Q 000047 1364 --SKGRSVHNSVMELRNICNHPYLSQLHAEE-----------VDTLIP-------------------------------- 1398 (2693)
Q Consensus 1364 --sk~rslln~LmqLRKICnHPyL~~~~~EE-----------id~li~-------------------------------- 1398 (2693)
..+..++..+.-|++|++|||........ .+.++.
T Consensus 973 ~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss 1052 (1567)
T KOG1015|consen 973 GRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSS 1052 (1567)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccccccccccc
Confidence 23456888888999999999875432110 000000
Q ss_pred -----------------------C--------------------------------CC-------CChhhhcccHHHHHH
Q 000047 1399 -----------------------K--------------------------------HY-------LPPIVRLCGKLEMLD 1416 (2693)
Q Consensus 1399 -----------------------~--------------------------------~~-------l~~Lvr~SgKLelLd 1416 (2693)
. +| ....+..|+|+.+|.
T Consensus 1053 ~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLl 1132 (1567)
T KOG1015|consen 1053 GSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLL 1132 (1567)
T ss_pred ccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHH
Confidence 0 00 001245789999999
Q ss_pred HHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----------------------cCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----------------------KQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1417 eLL~kLkatGhKVLIFSQft~tLDILed~L~~----------------------rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
+||..+.+-|.|+|||+|....||+|++||.. +|..|.||||++...+|+++.+.||+
T Consensus 1133 eIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1133 EILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999953 46789999999999999999999998
Q ss_pred CCC-CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000047 1475 QDS-PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLG 1553 (2693)
Q Consensus 1475 ~dS-d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~ 1553 (2693)
+.. ..++|||||+||++||||-+|+.|||||-.|||..+.|+|-|++|+||+|+|+|||||+.+|+||+||.|+-.|..
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqs 1292 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQS 1292 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhh
Confidence 654 5689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCcccCCCCHHHHHHHHHHH---HHHHhhhccCCCCCHHHHHHHHHhChhHHHHHHHhh
Q 000047 1554 VANQSITAGFFDNNTSAEDRREYLESL---LRECKKEEAAPVLDDDALNDLLARSESEIDVFESVD 1616 (2693)
Q Consensus 1554 Li~kVIqaG~fD~~ss~eE~~elLe~L---Lee~~~eE~~evlDDeeLndLLaRseeEle~Fe~~D 1616 (2693)
+..+|++........+..+..+++.-- +....+.+...++.|..+.+++...+..+..+.++|
T Consensus 1293 ls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehd 1358 (1567)
T KOG1015|consen 1293 LSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHD 1358 (1567)
T ss_pred hhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhh
Confidence 999999876555555555544443311 100111133456788889999988888777776665
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-63 Score=657.59 Aligned_cols=476 Identities=43% Similarity=0.684 Sum_probs=407.2
Q ss_pred cccCCC-ccCCCcchHHHHHHHHHHH-HHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCchHHHH
Q 000047 1079 VSEQPT-CLQGGKLREYQMSGLRWLV-SLYNNQLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1079 v~eqP~-~L~ggkLRPYQleGL~WLl-sLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSLL~QW 1155 (2693)
+...|. ......|++||.+|++|+. .++..+.+|||||+||+|||+|+|+++.+++..... .+|+|||||.+++.||
T Consensus 326 ~~~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw 405 (866)
T COG0553 326 LLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNW 405 (866)
T ss_pred hhccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHH
Confidence 334443 3345789999999999999 899999999999999999999999999987766665 5799999999999999
Q ss_pred HHHHHHHCCCCc-EEEEcCChHH---HHHHHHhhhhc---CCccEEEEcHHHHHhc-cCCCcccccCccEEEEccccccc
Q 000047 1156 ESEINFWAPRIH-KIVYCGPPEE---RRRLFKEKIVH---QKFNVLLTTYEYLMNK-HDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1156 ~eEfeKwaPsLk-VIvy~Gs~~e---Rk~l~ke~i~~---~kfdVVITTYE~Lik~-~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.+||.+|+|.++ ++.|+|.... +...+...... ..|++++|||+++.+. .+...+..+.|+++|+||||++|
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 999999999999 9999998752 12222222211 1389999999999872 14467999999999999999999
Q ss_pred cccchHHHHHHhhcccccccccccCCCCCHHHHHHHhh-hccCCCCC-ChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1228 NASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN-FLLPNIFN-SSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1228 N~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLn-FL~P~iF~-S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
|..+..++++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+...
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~------~~~~~ 559 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP------LEARE 559 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc------hhhHH
Confidence 99999999999999999999999999999999999999 99999999 568999999999877665432 12233
Q ss_pred HHHHHHHHHhhhhhhhhhHhH--HhhcCccceeEeeeccccHHHHHHHHHHHH---Hh----hccCCC---------CCc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHK--VENELPEKIERLVRCEASAYQKLLMKRVEE---NL----GSIGNS---------KGR 1367 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkD--VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee---~l----~si~~s---------k~r 1367 (2693)
..+.+|+.+++||++||+|.+ +..+||++.+.++.|.++..|..+|+.+.. .. ...... ...
T Consensus 560 ~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (866)
T COG0553 560 LGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSEL 639 (866)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Confidence 445669999999999999999 899999999999999999999999988765 21 111111 144
Q ss_pred chhHHHHHHHHhhCCccccchh-hhhhhcc--------CCCCCCChhhhcc-cHHHHHHHHH-HHhhcCCC--eEEEEEc
Q 000047 1368 SVHNSVMELRNICNHPYLSQLH-AEEVDTL--------IPKHYLPPIVRLC-GKLEMLDRLL-PKLKATDH--RVLFFST 1434 (2693)
Q Consensus 1368 slln~LmqLRKICnHPyL~~~~-~EEid~l--------i~~~~l~~Lvr~S-gKLelLdeLL-~kLkatGh--KVLIFSQ 1434 (2693)
.+++.++.||++|+||+++... ....+.. ........++..+ +|+..|.++| ..+...++ |||||+|
T Consensus 640 ~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq 719 (866)
T COG0553 640 NILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQ 719 (866)
T ss_pred HHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeC
Confidence 6789999999999999998654 2111110 1111234567788 9999999999 89999999 9999999
Q ss_pred chHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchh
Q 000047 1435 MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDL 1514 (2693)
Q Consensus 1435 ft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~di 1514 (2693)
|+.++++|+++|...++.|+++||+++..+|+.++++|+++ ..++|||++++|||.||||+.|++||+||+||||..+.
T Consensus 720 ~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~ 798 (866)
T COG0553 720 FTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVEL 798 (866)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHH
Confidence 99999999999999999999999999999999999999886 56889999999999999999999999999999999999
Q ss_pred hhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1515 QAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1515 QAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
||++|+|||||++.|.||+|++.+|+||+|+.++..|..+...++++
T Consensus 799 Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 799 QAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999985
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-61 Score=571.60 Aligned_cols=463 Identities=32% Similarity=0.486 Sum_probs=372.4
Q ss_pred ccCCCccCCCcchHHHHHHHHHHHHHhh-cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1080 SEQPTCLQGGKLREYQMSGLRWLVSLYN-NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1080 ~eqP~~L~ggkLRPYQleGL~WLlsLy~-n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
.+||..|. ..|.|||++||.|+..... .-.|||||||||.|||||+|+|+.. .....|.|||||.-.+.||.+|
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHH
Confidence 47888887 7899999999999988765 4578999999999999999999865 3455679999999999999999
Q ss_pred HHHHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc---------------CCCcccccCccEEEEcc
Q 000047 1159 INFWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH---------------DRPKLSKIQWHYIIIDE 1222 (2693)
Q Consensus 1159 feKwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~---------------Dr~~L~kikWd~VIIDE 1222 (2693)
|.++.. .+++++|+|...... .+ ...+||||+|||..+-... .+..|..++|..||+||
T Consensus 250 I~~~T~gslkv~~YhG~~R~~n--ik---el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKN--IK---ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHhccCceEEEEEecccccCC--HH---HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 999974 688999999764432 11 2358999999998874322 12357889999999999
Q ss_pred ccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCCh---------------------------
Q 000047 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSS--------------------------- 1275 (2693)
Q Consensus 1223 AHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~--------------------------- 1275 (2693)
||.||+..+...+++..+.+.+||+|||||+||.+.|||+|++||....|.-+
T Consensus 325 AH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 325 AHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred hcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchh
Confidence 99999999999999999999999999999999999999999999977655321
Q ss_pred ----hHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhh--cCccceeEeeeccccHHHHH
Q 000047 1276 ----EDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN--ELPEKIERLVRCEASAYQKL 1349 (2693)
Q Consensus 1276 ----k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVek--eLP~KiE~vV~ceLSa~Qk~ 1349 (2693)
..|..++.+|+...+..... .......|.+|+.+|+||+|-.-.. .||+++..+-.--++.....
T Consensus 405 m~h~~~~n~~mlk~IqkfG~eGpG---------k~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D 475 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFGVEGPG---------KEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKD 475 (791)
T ss_pred hhhhhhhcccccccchhhcccCch---------HHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHH
Confidence 12223334455444433222 2234578899999999999976554 48998887776667777777
Q ss_pred HHHHHHHH----hh-c----cCCCCCcchhHHHHHHHHhhCCccccchhhh---------h-------------h-----
Q 000047 1350 LMKRVEEN----LG-S----IGNSKGRSVHNSVMELRNICNHPYLSQLHAE---------E-------------V----- 1393 (2693)
Q Consensus 1350 LYk~Lee~----l~-s----i~~sk~rslln~LmqLRKICnHPyL~~~~~E---------E-------------i----- 1393 (2693)
+|+.+-.. +. . ....++..++..+.+||++..||||...... + +
T Consensus 476 ~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~Ch 555 (791)
T KOG1002|consen 476 LYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCH 555 (791)
T ss_pred HHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhh
Confidence 77665322 11 1 1123456788889999999999998543110 0 0
Q ss_pred ------------hccCC------------------CC------------------CCChhhhcccHHHHHHHHHHHhhcC
Q 000047 1394 ------------DTLIP------------------KH------------------YLPPIVRLCGKLEMLDRLLPKLKAT 1425 (2693)
Q Consensus 1394 ------------d~li~------------------~~------------------~l~~Lvr~SgKLelLdeLL~kLkat 1425 (2693)
..+.. .+ ..-.-|+.|.|+++|.+-|..+.+.
T Consensus 556 H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~r 635 (791)
T KOG1002|consen 556 HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRER 635 (791)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHc
Confidence 00000 00 0001256778999999999888765
Q ss_pred C--CeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE
Q 000047 1426 D--HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII 1503 (2693)
Q Consensus 1426 G--hKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi 1503 (2693)
+ -|.|||+||+.++|+|.-.|.+.|+..+.|.|+|+...|...|+.|. ++.+|.|||+|.+|||..|||+.|..|++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEEEEeccCceEeeechhceeEe
Confidence 5 58899999999999999999999999999999999999999999995 57889999999999999999999999999
Q ss_pred ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1504 yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
+||||||....||++|+|||||.++|+|.|||.++|||++|++.+++|.+|++..|+..
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qd 773 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQD 773 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999753
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.1e-60 Score=583.54 Aligned_cols=481 Identities=30% Similarity=0.470 Sum_probs=389.1
Q ss_pred hhhccc--cccccCCCccCCCcchHHHHHHHHHHHHHhhc-CCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCC
Q 000047 1071 MAHSIK--ESVSEQPTCLQGGKLREYQMSGLRWLVSLYNN-QLNGILADEMGLGKTVQVIALICYLMETK-------NDR 1140 (2693)
Q Consensus 1071 lah~ik--Eev~eqP~~L~ggkLRPYQleGL~WLlsLy~n-~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~ 1140 (2693)
..|.+. +.+++.|..+. ..|.|||+.|+.||+..... +.||||||+||||||+.+|++|..-.... ...
T Consensus 305 ~~e~~P~et~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a 383 (901)
T KOG4439|consen 305 ATETIPGETDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESA 383 (901)
T ss_pred HhhcCCCcccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 345554 34567787775 79999999999999876544 57899999999999999999998754332 122
Q ss_pred CCEEEEecCchHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc--------cCCCcc
Q 000047 1141 GPFLVVVPSSVLPGWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK--------HDRPKL 1210 (2693)
Q Consensus 1141 gP~LIVVPtSLL~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~--------~Dr~~L 1210 (2693)
.+.|||||.++++||..||++-.- -+.|++|+|+.. | .+-. -....||||||||..+.+. .+...|
T Consensus 384 ~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-~i~~--~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL 459 (901)
T KOG4439|consen 384 SKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNK-R-EISA--KELRKYDVVITTYNLVANKPDDELEEGKNSSPL 459 (901)
T ss_pred CCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc-c-cCCH--HHHhhcceEEEeeeccccCCchhhhcccCccHH
Confidence 358999999999999999987753 578999999874 2 1211 1236899999999988762 133468
Q ss_pred cccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCC
Q 000047 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNG 1290 (2693)
Q Consensus 1211 ~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g 1290 (2693)
..+.|.+||+||||.+||..++-+.++-.+.+.+||+|||||+||++-|+|+||.||+...|++.+.|.+|+..+-..
T Consensus 460 ~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~-- 537 (901)
T KOG4439|consen 460 ARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG-- 537 (901)
T ss_pred HHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998653221
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhh-----cCccceeEeeeccccHHHHHHHHHHHHHhhc-----
Q 000047 1291 DNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVEN-----ELPEKIERLVRCEASAYQKLLMKRVEENLGS----- 1360 (2693)
Q Consensus 1291 ~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVek-----eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s----- 1360 (2693)
..+||.-+.++.||||+|..... .||.+...++.++|+......|..+......
T Consensus 538 ----------------g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~ 601 (901)
T KOG4439|consen 538 ----------------GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQF 601 (901)
T ss_pred ----------------chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHH
Confidence 23567778899999999998876 8999999999999998887777655322100
Q ss_pred ---------cCC--C-----------------------------CCcchhHHHHHHHHhhCCccccchhhh---------
Q 000047 1361 ---------IGN--S-----------------------------KGRSVHNSVMELRNICNHPYLSQLHAE--------- 1391 (2693)
Q Consensus 1361 ---------i~~--s-----------------------------k~rslln~LmqLRKICnHPyL~~~~~E--------- 1391 (2693)
.+. . ....++..+++||++|+|+-+.....+
T Consensus 602 L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~ 681 (901)
T KOG4439|consen 602 LLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGG 681 (901)
T ss_pred HHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCc
Confidence 000 0 001247778999999999955321100
Q ss_pred ---h-----hhcc------------------CCCC---CCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHH
Q 000047 1392 ---E-----VDTL------------------IPKH---YLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDV 1441 (2693)
Q Consensus 1392 ---E-----id~l------------------i~~~---~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDI 1441 (2693)
+ .+.+ .+.. ..-...+.+.|+..+.++|..+ .....|++|.+||+.++++
T Consensus 682 ~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLni 761 (901)
T KOG4439|consen 682 DDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNI 761 (901)
T ss_pred chhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHH
Confidence 0 0000 0000 0112345778999999999887 6678999999999999999
Q ss_pred HHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhc
Q 000047 1442 MEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAH 1521 (2693)
Q Consensus 1442 Led~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAH 1521 (2693)
++..|...|+.|..++|.....+|+.+++.||..+...+|+|||..|||.||||..|+++|++|+.|||+.+.||.+|++
T Consensus 762 v~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIY 841 (901)
T KOG4439|consen 762 VRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIY 841 (901)
T ss_pred HHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCc--ccCCCCHHHHH
Q 000047 1522 RIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGF--FDNNTSAEDRR 1574 (2693)
Q Consensus 1522 RIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~--fD~~ss~eE~~ 1574 (2693)
|+||+|+|.||||++.+|||++|...+..|++++..|+.+.. -.++.+..+.+
T Consensus 842 R~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk 896 (901)
T KOG4439|consen 842 RMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLK 896 (901)
T ss_pred HhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHH
Confidence 999999999999999999999999999999999999997532 23444544443
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=8.8e-56 Score=539.56 Aligned_cols=481 Identities=31% Similarity=0.501 Sum_probs=377.2
Q ss_pred CcchHHHHHHHHHHHH-------Hhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVS-------LYN--NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLls-------Ly~--n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|+|||+-||+||.. .|+ .+.|||||+.||||||+|+|+|+--++..... +.+|+|+|-.+|.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~A-KtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKA-KTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCcc-ceEEEEEehHHHHHHHHHh
Confidence 4789999999999853 222 36799999999999999999999888765554 4599999999999999999
Q ss_pred HHHCCCC-----------cEEEEcCC---hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC------------------
Q 000047 1160 NFWAPRI-----------HKIVYCGP---PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR------------------ 1207 (2693)
Q Consensus 1160 eKwaPsL-----------kVIvy~Gs---~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr------------------ 1207 (2693)
..|.|.+ .+++.... -..|.+++..|. ..-.|+++-|++++-..-+
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv--~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWV--QTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHh--ccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 9999852 23333222 234545544443 5667999999988521110
Q ss_pred ------------------CcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1208 ------------------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1208 ------------------~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
..|.+-..|+|||||+|||||.....+.+|+.++.++||.|||-|+||||-|+|.+++|++|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 12455568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcCcccCCCCCC--chhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHH
Q 000047 1270 NIFNSSEDFSQWFNKPFESNGDNS--PDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQ 1347 (2693)
Q Consensus 1270 ~iF~S~k~F~e~F~kP~e~~g~~s--~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Q 1347 (2693)
+++++..+|...|.+||.++.-.+ .+...+.. .-...||.+|..|+-||.-..+...||.+.|++|.+.++..|
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmr----yRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQ 565 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMR----YRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQ 565 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHHHHH----HHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHH
Confidence 999999999999999999876433 33333322 234579999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhccCCCCCc--chhHHHHHHHHhhCCccccchhhh------h----hhccC---------C-----C-
Q 000047 1348 KLLMKRVE-ENLGSIGNSKGR--SVHNSVMELRNICNHPYLSQLHAE------E----VDTLI---------P-----K- 1399 (2693)
Q Consensus 1348 k~LYk~Le-e~l~si~~sk~r--slln~LmqLRKICnHPyL~~~~~E------E----id~li---------~-----~- 1399 (2693)
+.||+.+. .....++..... ..+.++.-..+|+|||.+.....+ + ++.+. + .
T Consensus 566 R~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~ 645 (1387)
T KOG1016|consen 566 RQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSN 645 (1387)
T ss_pred HHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCC
Confidence 99999875 333333333222 344555567888999976432111 0 10000 0 0
Q ss_pred -----------------------------------------------CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEE
Q 000047 1400 -----------------------------------------------HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFF 1432 (2693)
Q Consensus 1400 -----------------------------------------------~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIF 1432 (2693)
.|-..++..+.|+..+.+++.+-..-|.|+|||
T Consensus 646 ~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~f 725 (1387)
T KOG1016|consen 646 PSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIF 725 (1387)
T ss_pred CCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEe
Confidence 000001112234444444444445568999999
Q ss_pred EcchHHHHHHHHHHhhc------------------CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccC
Q 000047 1433 STMTRLLDVMEDYLTFK------------------QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVN 1494 (2693)
Q Consensus 1433 SQft~tLDILed~L~~r------------------GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLN 1494 (2693)
+|....+|.|+++|..+ ...|+++||.++..+|+++|++||.+-+=.+.|||||++|..|||
T Consensus 726 Sq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGin 805 (1387)
T KOG1016|consen 726 SQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGIN 805 (1387)
T ss_pred ecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccce
Confidence 99999999999999753 346999999999999999999998866545799999999999999
Q ss_pred ccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccCcccCCCCHHHHH
Q 000047 1495 LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRR 1574 (2693)
Q Consensus 1495 LQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG~fD~~ss~eE~~ 1574 (2693)
|-.|+.+|+||..|||..+.||++|++|+||+|+|+|||||..+++|.+||.|+..|..|.++|+++-.-+.+.+..|.+
T Consensus 806 LIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~e 885 (1387)
T KOG1016|consen 806 LISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELE 885 (1387)
T ss_pred eeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666666665544
Q ss_pred HH
Q 000047 1575 EY 1576 (2693)
Q Consensus 1575 el 1576 (2693)
.+
T Consensus 886 nL 887 (1387)
T KOG1016|consen 886 NL 887 (1387)
T ss_pred HH
Confidence 43
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.4e-53 Score=556.24 Aligned_cols=438 Identities=19% Similarity=0.205 Sum_probs=325.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|.|||+..+.++... ...+.||||||||||||+|++++.+++..+ ..+|+|||||.+|+.||..|+.+|+ ++.+
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~sL~~QW~~El~~kF-~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPETLQHQWLVEMLRRF-NLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCHHHHHHHHHHHHHHh-CCCe
Confidence 57999999998876553 356789999999999999999998887654 4567999999999999999998887 3566
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEccccccccc---cchHHHHHHhh--cc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNA---SCKLNADLKHY--QS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~---sSKlsraLk~L--ka 1242 (2693)
.+|.+........ ........++++|+||+++.+... ...+....|++|||||||+++|. .++.++.+..+ ++
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 6665543221100 011223467899999999986321 23466789999999999999963 56678888777 56
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC--cc-------cCCCCCCc-hhhhhHHH----------
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK--PF-------ESNGDNSP-DEALLSEE---------- 1302 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k--P~-------e~~g~~s~-~e~~LseE---------- 1302 (2693)
+++|+|||||++|+..|+|++|+||+|..|.++..|.+.+.. ++ ........ ....+...
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 899999999999999999999999999999999999875542 11 01111000 00011000
Q ss_pred ------------HHHHHHHHHHH--HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1303 ------------ENLLIINRLHQ--VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1303 ------------e~lliI~RLhk--VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
.....+..|.. -...+|+|+++.+|. .+|.+..+.+.+++.......+...
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~-------------- 450 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVS-------------- 450 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHh--------------
Confidence 00011111111 112678899999986 5899988888888865333222210
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-h
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-T 1447 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L-~ 1447 (2693)
....+++ +.+|..... ... .....+..+.|+++|.++|..+. ++||||||++..+++.|.++| .
T Consensus 451 ---~~~~~~~-~l~pe~~~~---~~~------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~ 515 (956)
T PRK04914 451 ---LEARARD-MLYPEQIYQ---EFE------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALRE 515 (956)
T ss_pred ---HHHHHHh-hcCHHHHHH---HHh------hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhh
Confidence 0011222 222211000 000 00112445689999999998654 789999999999999999999 5
Q ss_pred hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1448 FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1448 ~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
..|++++.|||+++..+|.++++.|+.++..+. |||+|++||+||||+.|++||+||+||||..|+||+||+||+||++
T Consensus 516 ~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 516 REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCc
Confidence 679999999999999999999999987543444 5788999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1528 eV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
+|.||+++..+|++++|++....|+++++.++..+
T Consensus 595 ~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 595 DIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred eEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999765
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=7.6e-52 Score=494.45 Aligned_cols=420 Identities=27% Similarity=0.372 Sum_probs=325.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|.|||++||+|.+. ++.++|||||||||||+|||+++.|+. ..+|+|||||.++...|.++|.+|+|.+.-
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyr----aEwplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYR----AEWPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHh----hcCcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 4799999999999876 677889999999999999999998875 357999999999999999999999998765
Q ss_pred E-EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh--ccccc
Q 000047 1169 I-VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHR 1245 (2693)
Q Consensus 1169 I-vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L--ka~~R 1245 (2693)
+ +..+.. ++- .....-..|.|.+|+.+.... ..|..-+|.+||+||+|++|+..+++.+++.-+ .+.|.
T Consensus 270 i~vv~~~~-D~~-----~~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhv 341 (689)
T KOG1000|consen 270 IFVVDKSS-DPL-----PDVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHV 341 (689)
T ss_pred eEEEeccc-CCc-----cccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhhe
Confidence 2 222221 110 011123568899999998744 367777899999999999999999999888765 67899
Q ss_pred ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh-hhhhhhhH
Q 000047 1246 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR-PFVLRRLK 1324 (2693)
Q Consensus 1246 LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr-PFLLRRtK 1324 (2693)
|||||||--..+.|||.++..+++.+|..+.+|...|+..-....-.+ ........+|+-+|. -.|+||+|
T Consensus 342 ILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D--------ykg~tnl~EL~~lL~k~lMIRRlK 413 (689)
T KOG1000|consen 342 ILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD--------YKGCTNLEELAALLFKRLMIRRLK 413 (689)
T ss_pred EEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee--------cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886422211110 111122445666665 46899999
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
.+|+.+||+|...++.+ ....+....+.+....... . ..+ .|+-.+.|---+..
T Consensus 414 ~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~-----t-~~~-~~e~~~~~l~l~y~------------------ 467 (689)
T KOG1000|consen 414 ADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADY-----T-KVN-SMERKHESLLLFYS------------------ 467 (689)
T ss_pred HHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhhc-----c-hhh-hhhhhhHHHHHHHH------------------
Confidence 99999999996555443 2222322222222111110 0 000 11111111100000
Q ss_pred hhhcccHHHHHHHHHHH----hhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1405 IVRLCGKLEMLDRLLPK----LKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~k----LkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
...-.|+..+.+.|.. ..+.+.|+|||+++..++|-|+.++..+++.++||||+|+..+|..+++.|+. +.++.
T Consensus 468 -~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~-seev~ 545 (689)
T KOG1000|consen 468 -LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT-SEEVR 545 (689)
T ss_pred -HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc-ccceE
Confidence 0112366666666655 45678999999999999999999999999999999999999999999999954 56799
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
|-+||..|+|.||+|++|+.|+|..++|||...+||.+|+|||||+..|.||+||+++|+||.+|..++.|++++..+-
T Consensus 546 VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 546 VAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887654
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.3e-50 Score=510.85 Aligned_cols=391 Identities=43% Similarity=0.679 Sum_probs=343.5
Q ss_pred ccCCCccC--CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1080 SEQPTCLQ--GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1080 ~eqP~~L~--ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
..||..+. ++.|.+||.+|++|+...+..+..+|||||||+|||+++|.+++.++......+|+|+++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46787776 5899999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHh-------------------hhhcCCccEEEEcHHHHHhccCCCcccccCccEE
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKE-------------------KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYI 1218 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke-------------------~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~V 1218 (2693)
|+..|+|.+.++.|.|+...|.-+... ......|+|.+++|+.+.. +...+..+.|.++
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~l 440 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLL 440 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhccee
Confidence 999999999999999998766533211 1124578999999999976 7778999999999
Q ss_pred EEccccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhh
Q 000047 1219 IIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEAL 1298 (2693)
Q Consensus 1219 IIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~ 1298 (2693)
|+||+||++|..+++.+.+..+...++++|||||++|++.||+++|+||.|+.|++...|.+.|..
T Consensus 441 ivde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d-------------- 506 (696)
T KOG0383|consen 441 IVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD-------------- 506 (696)
T ss_pred EeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch--------------
Confidence 999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHH-hhccC-CCCCcchhHHHHHH
Q 000047 1299 LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEEN-LGSIG-NSKGRSVHNSVMEL 1376 (2693)
Q Consensus 1299 LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~-l~si~-~sk~rslln~LmqL 1376 (2693)
......++.||.++.|+|+||+|.||.+.+|.|.+.++.+.|+..|+.+|+.+... +..+. ....-.++|++|+|
T Consensus 507 ---~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel 583 (696)
T KOG0383|consen 507 ---ISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMEL 583 (696)
T ss_pred ---hhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHH
Confidence 11234578999999999999999999999999999999999999999999988542 22221 22234678999999
Q ss_pred HHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEE
Q 000047 1377 RNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRL 1456 (2693)
Q Consensus 1377 RKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRL 1456 (2693)
||+|+|||++...+..... .......+++.++|+.+|..++++++..|||||||+||+.++|+|++||...+ .|.|+
T Consensus 584 ~K~~~hpy~~~~~e~~~~~--~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~ 660 (696)
T KOG0383|consen 584 RKQCNHPYLSPLEEPLEEN--GEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERI 660 (696)
T ss_pred HHhhcCcccCccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceec
Confidence 9999999999762211100 01123457889999999999999999999999999999999999999999999 99999
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1457 DGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1457 DGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
||.....+|+.+|++||.+++.-||||+||+|||+|
T Consensus 661 dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 661 DGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999999999999999999999999999988
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-45 Score=473.30 Aligned_cols=443 Identities=32% Similarity=0.448 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHHhh-cCCCeEEEcCCCCChHHHHHHHHHHHHHhcC------CCCCEEEEecCchHHHHHHHHHHHCC-
Q 000047 1093 EYQMSGLRWLVSLYN-NQLNGILADEMGLGKTVQVIALICYLMETKN------DRGPFLVVVPSSVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~-n~lnGILADEMGLGKTIQAIALIa~Lle~k~------~~gP~LIVVPtSLL~QW~eEfeKwaP- 1164 (2693)
.+|..+..|+..... .-.+||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 444444444443322 2368999999999999999999875433322 34558999999999999999965553
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
.+.+.+|+| |.+ .......++||||||..+.. ..+..+.|-.||+||||.++|..++.++++..+.+.
T Consensus 215 ~~l~v~v~~g----r~k---d~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~ 283 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTK---DKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAK 283 (674)
T ss_pred cceEEEEecc----ccc---ccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchHhhhhheeeccc
Confidence 467788888 211 12223678899999999974 467779999999999999999999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+||.|||||+||++.|||+++.|+.-..|..+..|...+..|+..+.. .....+++.+|+.+++||+
T Consensus 284 ~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-------------~~~~k~l~~~L~~v~lrrt 350 (674)
T KOG1001|consen 284 YRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-------------KEGVKTLQGILKKVMLRRT 350 (674)
T ss_pred eeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-------------HHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999888887765431 2346788999999999999
Q ss_pred HhHH-----hhcCccceeEeeeccccHHHHHHHHHHHHHhhcc---------CCCCCcchhHHHHHHHHhhCCccccchh
Q 000047 1324 KHKV-----ENELPEKIERLVRCEASAYQKLLMKRVEENLGSI---------GNSKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1324 KkDV-----ekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si---------~~sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
|..- ...||++...++.+.++...+.+|+.+..+.... ....+..++..+.+||++|+||+++...
T Consensus 351 K~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~ 430 (674)
T KOG1001|consen 351 KEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYE 430 (674)
T ss_pred ccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhh
Confidence 8632 3479999999999999999999998876543211 1123446677788999999999885422
Q ss_pred hhhh--------------hcc----C---CCCC----------------------------------------------C
Q 000047 1390 AEEV--------------DTL----I---PKHY----------------------------------------------L 1402 (2693)
Q Consensus 1390 ~EEi--------------d~l----i---~~~~----------------------------------------------l 1402 (2693)
.... ..+ . .... .
T Consensus 431 ~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~ 510 (674)
T KOG1001|consen 431 MDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPL 510 (674)
T ss_pred hhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccc
Confidence 1100 000 0 0000 0
Q ss_pred Chhhh----cccHHHHHHHHHHHhhcCCC-eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1403 PPIVR----LCGKLEMLDRLLPKLKATDH-RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1403 ~~Lvr----~SgKLelLdeLL~kLkatGh-KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
...+. .+.|+..+.++|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..|+ .+.
T Consensus 511 ~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~ 589 (674)
T KOG1001|consen 511 PSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDP 589 (674)
T ss_pred cchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCc
Confidence 00011 14567777777775544444 9999999999999999999999999999999999999999999997 677
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhh
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQ 1557 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~k 1557 (2693)
.+.|+|+|.+||+.||||+.|++||++|++|||..+.||++|||||||+++|.|+||+..+|+||+|+..+++|+.+...
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~ 669 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNAS 669 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hcc
Q 000047 1558 SIT 1560 (2693)
Q Consensus 1558 VIq 1560 (2693)
+..
T Consensus 670 a~~ 672 (674)
T KOG1001|consen 670 AFG 672 (674)
T ss_pred hcc
Confidence 654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=4.8e-39 Score=376.26 Aligned_cols=275 Identities=41% Similarity=0.725 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHh---------hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCC--CEEEEecCchHHHHHHHHHHH
Q 000047 1094 YQMSGLRWLVSLY---------NNQLNGILADEMGLGKTVQVIALICYLMETKNDRG--PFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1094 YQleGL~WLlsLy---------~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~g--P~LIVVPtSLL~QW~eEfeKw 1162 (2693)
||++||.||+.++ ....|||||||||+|||+++|+++.++.......+ ++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 77889999999999999999999998877655443 699999999999999999999
Q ss_pred C-C-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH---hccCCCcccccCccEEEEccccccccccchHHHHH
Q 000047 1163 A-P-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM---NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1163 a-P-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li---k~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
+ + .+++++|.|....+. ........++|+|+||+.+. .......+...+|++|||||+|++||..++.++++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR---LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH---TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccc---ccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 688999988762222 12234568999999999998 11244567778899999999999999999999999
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
..+.+.++|+|||||++|++.|||.+++||.|..+.....|.++|..+ ..........+|..++++
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~--------------~~~~~~~~~~~L~~~l~~ 223 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP--------------DKENSYENIERLRELLSE 223 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH--------------HHTHHHHHHHHHHHHHCC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh--------------ccccccccccccccccch
Confidence 999999999999999999999999999999999999999999988653 122344567899999999
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCC-------CCcchhHHHHHHHHhhCCccc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNS-------KGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~s-------k~rslln~LmqLRKICnHPyL 1385 (2693)
|++||.+.++...||+..+.++.|+|++.|+.+|+.+.......... ....++..+++||++|+||+|
T Consensus 224 ~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 224 FMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp CEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred hhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCccc
Confidence 99999999998899999999999999999999999887655432221 234678889999999999987
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-36 Score=386.77 Aligned_cols=349 Identities=19% Similarity=0.293 Sum_probs=252.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP-- 1164 (2693)
...|||||.++|.|+.. .....+|||+++||+|||++++++++.+ .+++|||||..+ +.||.++|.+|+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 47899999999998863 1122589999999999999999988765 356999999875 7899999999973
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------CcccccCccEEEEccccccccccchHHHH
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------PKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
...+..|.|..... ......|+|+||+++.....+ ..|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 45566677653221 123578999999998643211 234556899999999999954 334456
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
+..+.+.+||+|||||++++ +.+..|+|+ .|.+|.. .|. .++
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~---------------------------------eLi 438 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWM---------------------------------ELQ 438 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHH---------------------------------HHH
Confidence 77789999999999999876 334445544 3433211 000 000
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+ ...|.+.....++|+|++.....|..... . .+..+
T Consensus 439 ~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------~-----------~k~~l--------------- 474 (732)
T TIGR00603 439 K-----------KGFIANVQCAEVWCPMTPEFYREYLRENS-------R-----------KRMLL--------------- 474 (732)
T ss_pred h-----------CCccccceEEEEEecCCHHHHHHHHHhcc-------h-----------hhhHH---------------
Confidence 0 11233444566889999754333321100 0 00000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
......|+..+..++......++|+||||.++..++.+...| +. ..|+|.|+..+|.+++++|+.+
T Consensus 475 ---------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~ 540 (732)
T TIGR00603 475 ---------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHN 540 (732)
T ss_pred ---------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhC
Confidence 001235889988888876678999999999999888887776 33 4589999999999999999754
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCccc-----EEEEEEEeCCCHHHHHHHHHH
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRD-----VLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKe-----V~VyRLIT~gSIEEkIlerae 1549 (2693)
. .+. +|++|++|++||||+.|++||++++++ ++..++||+||+.|.+..+. ..+|.|++.+|.|+....+.+
T Consensus 541 ~-~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq 618 (732)
T TIGR00603 541 P-KVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQ 618 (732)
T ss_pred C-Ccc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHH
Confidence 2 222 577779999999999999999999986 99999999999999987654 789999999999998765444
Q ss_pred H
Q 000047 1550 H 1550 (2693)
Q Consensus 1550 k 1550 (2693)
+
T Consensus 619 ~ 619 (732)
T TIGR00603 619 R 619 (732)
T ss_pred H
Confidence 3
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.6e-34 Score=383.10 Aligned_cols=435 Identities=18% Similarity=0.174 Sum_probs=283.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs-- 1165 (2693)
.++|+||.+.+..++. .|+|++++||+|||++++.++.+++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4789999998887764 38999999999999999988887773 334679999998 6778999999988642
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh---cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY---QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L---ka 1242 (2693)
..+..+.|......+. . .....+|+|+|++.+........+....|++|||||||++.+..+..+..-..+ +.
T Consensus 87 ~~v~~~~g~~~~~~r~---~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---E-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHHH---H-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 3677787754332211 1 123579999999999876544556667899999999999987554333222212 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCCh----hHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSS----EDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~----k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.++++|||||..+ ...+..+++.|....+..+ ..+..++..+- .......+. ..+..++..|..+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~-----v~~~~v~l~-----~~~~~i~~~l~~~ 231 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVK-----IEWVRVELP-----EELKEIRDLLNEA 231 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccce-----eEEEEeCCc-----HHHHHHHHHHHHH
Confidence 5689999999765 5666666665543322111 12222222110 000001111 1244677778888
Q ss_pred hhhhhHhHHhhcC-ccceeEeeeccccHHHHHHHHHHHHHhh--------------------ccCCCCCcchhHHHHHHH
Q 000047 1319 VLRRLKHKVENEL-PEKIERLVRCEASAYQKLLMKRVEENLG--------------------SIGNSKGRSVHNSVMELR 1377 (2693)
Q Consensus 1319 LLRRtKkDVekeL-P~KiE~vV~ceLSa~Qk~LYk~Lee~l~--------------------si~~sk~rslln~LmqLR 1377 (2693)
+.+|++....... +.....+....+...++.++..+...-. .........+...+..++
T Consensus 232 ~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~ 311 (773)
T PRK13766 232 LKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLR 311 (773)
T ss_pred HHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 7777766543222 1221122223333334333333221000 000000000111111111
Q ss_pred HhhCCccccchhhhhhhccCCCC-------CCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1378 NICNHPYLSQLHAEEVDTLIPKH-------YLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1378 KICnHPyL~~~~~EEid~li~~~-------~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
..+.++-.. .....++... ....+....+|+..|.++|.++. ..+.|+||||++.+++++|.++|..
T Consensus 312 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~ 387 (773)
T PRK13766 312 EEARSSGGS----KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK 387 (773)
T ss_pred hhccccCCc----HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 111000000 0000000000 00111234679999999998876 5789999999999999999999999
Q ss_pred cCCeEEEEeCC--------CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh
Q 000047 1449 KQYRYLRLDGH--------TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 1520 (2693)
Q Consensus 1449 rGikylRLDGS--------TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA 1520 (2693)
.|+.+.+++|. ++..+|.+++++|+.+... +|++|+++++|+|++.|++||+||++||+..++||.||+
T Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 388 EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999987 8889999999999887654 789999999999999999999999999999999999999
Q ss_pred cccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000047 1521 HRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1521 HRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li 1555 (2693)
+|.|+ +.||.|++.+|+||.+|....+|...+
T Consensus 465 gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 465 GRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 88875 678999999999999988777665544
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=9.7e-29 Score=301.82 Aligned_cols=428 Identities=20% Similarity=0.181 Sum_probs=277.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--Ps 1165 (2693)
.+.|.||.....-.+. .|.+++.+||||||++|+.++.+.+...+. .+|+++|+ -|+.|...-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4789999998876664 489999999999999999999877665543 58999997 66788888888776 45
Q ss_pred CcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH--HHHHhhc
Q 000047 1166 IHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN--ADLKHYQ 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls--raLk~Lk 1241 (2693)
..++.+.|.. .+|...| .+-+|+++|++.+.+++-...+...++.+||+|||||.-+..+-.+ +....+.
T Consensus 87 ~~i~~ltGev~p~~R~~~w------~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 87 DEIAALTGEVRPEEREELW------AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hheeeecCCCChHHHHHHH------hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 6778888854 4454443 4679999999999998877788888999999999999866544322 2222333
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCC--C--hhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFN--S--SEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~--S--~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
..+.|+||||| -++.+.+...++-|.-+-.. + ..+...+... ......+..+.. +-..+...|..+|+
T Consensus 161 k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-----~kve~ikV~lp~-e~~~ir~~l~~~l~ 233 (542)
T COG1111 161 KNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-----IKVEWIKVDLPE-EIKEIRDLLRDALK 233 (542)
T ss_pred cCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-----ceeEEEeccCcH-HHHHHHHHHHHHHH
Confidence 34679999999 56777777777666433221 1 1111111110 000011111221 22234445555555
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh-ccC--------------------------CCCCcch
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIG--------------------------NSKGRSV 1369 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~-si~--------------------------~sk~rsl 1369 (2693)
+.+ +.--... .....++ ..++.+.......+. ... ...-..+
T Consensus 234 ~~L----k~L~~~g-----~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~ 302 (542)
T COG1111 234 PRL----KPLKELG-----VIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPF 302 (542)
T ss_pred HHH----HHHHHcC-----ceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 433 2211111 1111111 111211111100000 000 0000011
Q ss_pred hHHHHHHHHh------------hCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcc
Q 000047 1370 HNSVMELRNI------------CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTM 1435 (2693)
Q Consensus 1370 ln~LmqLRKI------------CnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQf 1435 (2693)
.+.+..|..- ...|+......... .....--..+|++.|.++|.+.. ..+.|||||++|
T Consensus 303 ~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~-------~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~y 375 (542)
T COG1111 303 YQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLI-------RADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEY 375 (542)
T ss_pred HHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHH-------HhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 1111111111 11111110000000 00001112479999999999876 557899999999
Q ss_pred hHHHHHHHHHHhhcCCeEE-EEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC
Q 000047 1436 TRLLDVMEDYLTFKQYRYL-RLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT 1506 (2693)
Q Consensus 1436 t~tLDILed~L~~rGikyl-RLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp 1506 (2693)
+++++.|.++|...|.... ++-| +|++.+..++|++|++++-+ +|++|.+|.+|||++++|.|||||+
T Consensus 376 RdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEp 452 (542)
T COG1111 376 RDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEP 452 (542)
T ss_pred HhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecC
Confidence 9999999999999888775 6655 59999999999999988765 8999999999999999999999999
Q ss_pred CCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1507 DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1507 pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
--++...+||.||++|- +.-+||-|++++|-||.-|....+|...+...|.
T Consensus 453 vpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 453 VPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred CcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 6678999999999999999999888766655553
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2.1e-27 Score=298.18 Aligned_cols=367 Identities=20% Similarity=0.242 Sum_probs=260.4
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
...+||+||.+++..++..+.....||+...||.|||+.++.++..+. ..+|||||. .++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 357899999999988887666688999999999999999999888763 238999997 5569999888888754
Q ss_pred C-cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1166 I-HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1166 L-kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
. .+-.|.|..... .. ..|+|+||+++.+......+...+|++||+|||||+-+... ...+..+...+
T Consensus 107 ~~~~g~~~~~~~~~---------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~--~~~~~~~~~~~ 174 (442)
T COG1061 107 NDEIGIYGGGEKEL---------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY--RRILELLSAAY 174 (442)
T ss_pred ccccceecCceecc---------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH--HHHHHhhhccc
Confidence 3 344444432111 01 57999999999874222344455899999999999865443 33445566666
Q ss_pred -cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1245 -RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1245 -RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+|+|||||...+...+..++.++.|.++.- ++
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~-----------------------------------------------~~ 207 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGPIVYEV-----------------------------------------------SL 207 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcCCeEeec-----------------------------------------------CH
Confidence 999999997554333333333332221110 01
Q ss_pred HhHHh-hcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1324 KHKVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1324 KkDVe-keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
+..+. ..|.+.....+.+.++......|................ .......+.
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------------ 261 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT--LRAENEARR------------------------ 261 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--hhHHHHHHH------------------------
Confidence 11122 356667777788878777776666543322111110000 000000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.......|+..+..++.... .+.++|||+......+.|...|...|+ ...++|.++..+|..++++|+.++.+ +
T Consensus 262 -~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~---~ 335 (442)
T COG1061 262 -IAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIK---V 335 (442)
T ss_pred -HhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCC---E
Confidence 11223457788888888766 789999999999999999999998888 89999999999999999999887643 8
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-CCccc--EEEEEEEeCCCHHHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQKRD--VLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-GQkKe--V~VyRLIT~gSIEEkIleraek 1550 (2693)
|++++++.+|+|+++|+++|+..+.-++..++|++||+.|. ..+.. +..|-++...+.+..+......
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 99999999999999999999999999999999999999994 44444 7778888888888776655443
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=3e-27 Score=300.86 Aligned_cols=340 Identities=15% Similarity=0.184 Sum_probs=228.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--C
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--P 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--P 1164 (2693)
.+.||+||.+++..++. +.++||...||+|||++++.++.+++... ..++|||||+ .|+.||.++|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36899999999976664 66789999999999999877766655432 3369999998 66799999999876 3
Q ss_pred CCcE-EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cc
Q 000047 1165 RIHK-IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QS 1242 (2693)
Q Consensus 1165 sLkV-Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka 1242 (2693)
...+ .++.|... ....+|+|+|++.+.+... ..+ .+|++|||||||++... .+...+..+ ++
T Consensus 186 ~~~~~~i~~g~~~-----------~~~~~I~VaT~qsl~~~~~-~~~--~~~~~iIvDEaH~~~~~--~~~~il~~~~~~ 249 (501)
T PHA02558 186 REAMHKIYSGTAK-----------DTDAPIVVSTWQSAVKQPK-EWF--DQFGMVIVDECHLFTGK--SLTSIITKLDNC 249 (501)
T ss_pred ccceeEEecCccc-----------CCCCCEEEeeHHHHhhchh-hhc--cccCEEEEEchhcccch--hHHHHHHhhhcc
Confidence 3333 34444321 1357899999999976321 122 47899999999999753 345556666 57
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
+++++|||||...... .+.+..++.|-.... . ...++.
T Consensus 250 ~~~lGLTATp~~~~~~-~~~~~~~fG~i~~~v--~---------------------------------~~~li~------ 287 (501)
T PHA02558 250 KFKFGLTGSLRDGKAN-ILQYVGLFGDIFKPV--T---------------------------------TSQLME------ 287 (501)
T ss_pred ceEEEEeccCCCcccc-HHHHHHhhCCceEEe--c---------------------------------HHHHHh------
Confidence 8899999999543221 111111111100000 0 000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+.......+.+..+......+ ....... .+..
T Consensus 288 -----~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~---~~~~------------------------ 322 (501)
T PHA02558 288 -----EGQVTDLKINSIFLRYPDEDRVKL-------------KGEDYQE---EIKY------------------------ 322 (501)
T ss_pred -----CCCcCCceEEEEeccCCHHHhhhh-------------cccchHH---HHHH------------------------
Confidence 001111111122222221100000 0000000 0000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
+.....+..++.+++..+...++++||||..++.++.|.+.|...|+++..|+|.++.++|..+++.|+.+. ..|+
T Consensus 323 --l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~vL 398 (501)
T PHA02558 323 --ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GIII 398 (501)
T ss_pred --HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--CeEE
Confidence 112233566777777777778899999999999999999999999999999999999999999999997543 3454
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc-EEEEEEEeCCCH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD-VLVLRFETVQTV 1540 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe-V~VyRLIT~gSI 1540 (2693)
|.+++.+++|+|++.+|+||+++|..+...++|++||++|.+..|. +.||.|+..-.+
T Consensus 399 vaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 399 VASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred EEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 5555999999999999999999999999999999999999988765 899999875443
No 26
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.96 E-value=7.9e-29 Score=321.37 Aligned_cols=257 Identities=25% Similarity=0.422 Sum_probs=194.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH------------hc---CCCCCEEEEecCchHHHHHHHHHHHCCCC-cEEEEc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME------------TK---NDRGPFLVVVPSSVLPGWESEINFWAPRI-HKIVYC 1172 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle------------~k---~~~gP~LIVVPtSLL~QW~eEfeKwaPsL-kVIvy~ 1172 (2693)
+..+++|||||+|||...+++...-.. .+ ...|..|||||.+++.||..||.++++.. +|..|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 445699999999999998877653211 01 12356899999999999999999999876 999999
Q ss_pred CChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------------------CcccccCccEEEEccccccccccch
Q 000047 1173 GPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------------------PKLSKIQWHYIIIDEGHRIKNASCK 1232 (2693)
Q Consensus 1173 Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------------------~~L~kikWd~VIIDEAHRIKN~sSK 1232 (2693)
|-... .+........+|||+|||+.|+..... ..|..+.|..||+|||+-+....+.
T Consensus 454 Girk~---~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~ 530 (1394)
T KOG0298|consen 454 GIRKT---FWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSA 530 (1394)
T ss_pred chhhh---cccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHH
Confidence 95432 222223456899999999999754321 2366678999999999999999999
Q ss_pred HHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1233 LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1233 lsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.++.+.++++.++|++||||+++ +.+|+.||+||.-..|+...+|.+.+..++... .....++
T Consensus 531 ~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r----------------a~~~~~~ 593 (1394)
T KOG0298|consen 531 AAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR----------------AKCEPLL 593 (1394)
T ss_pred HHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH----------------hhhhhHH
Confidence 99999999999999999999999 999999999999888999999988876544322 2234677
Q ss_pred HHhhhhhhhhhHhHHhh--cCccceeEeeeccccHHHHHHHHHHH--------HHh-----hccCCC---------CCcc
Q 000047 1313 QVLRPFVLRRLKHKVEN--ELPEKIERLVRCEASAYQKLLMKRVE--------ENL-----GSIGNS---------KGRS 1368 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVek--eLP~KiE~vV~ceLSa~Qk~LYk~Le--------e~l-----~si~~s---------k~rs 1368 (2693)
.++...+-|+.|.+|+. .+|+..+.+....+++.+..+|+..- ..+ ..++.. ....
T Consensus 594 dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~ 673 (1394)
T KOG0298|consen 594 DLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAI 673 (1394)
T ss_pred HHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHH
Confidence 88888899999998876 46887777777777777666665321 111 011111 1235
Q ss_pred hhHHHHHHHHhhCCccc
Q 000047 1369 VHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL 1385 (2693)
+.+.+.+||++|+||..
T Consensus 674 i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 674 ILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHHhhccccc
Confidence 67788899999999843
No 27
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=3.7e-26 Score=293.55 Aligned_cols=323 Identities=18% Similarity=0.266 Sum_probs=222.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-HHHHhc---CCCCC-EEEEecCch-HHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-YLMETK---NDRGP-FLVVVPSSV-LPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-~Lle~k---~~~gP-~LIVVPtSL-L~QW~eEfeKw 1162 (2693)
.++.++|.+++..++. +.+.|+..+||+|||++++..+. ++.... ...+| +|||||+.. ..||..++.+|
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 3688999999988775 78999999999999998765433 333221 11233 799999855 57899999988
Q ss_pred CCC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHH
Q 000047 1163 APR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLK 1238 (2693)
Q Consensus 1163 aPs--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk 1238 (2693)
... +++.+.+|......+.. ......+|+|+|++.|........+...++++|||||||+|..... .+.+.+.
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~ 303 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVS 303 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHH
Confidence 753 45555555443332221 1235689999999999876555455556789999999999976542 2334444
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. ...+++|||.- .++..+. .+|
T Consensus 304 ~~~~~~q~l~~SAT~p----~~v~~l~---------------~~l----------------------------------- 329 (545)
T PTZ00110 304 QIRPDRQTLMWSATWP----KEVQSLA---------------RDL----------------------------------- 329 (545)
T ss_pred hCCCCCeEEEEEeCCC----HHHHHHH---------------HHH-----------------------------------
Confidence 4433 34578899951 1111100 000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
+ ...|.. +.+.. ........ + .+.+
T Consensus 330 -~---------~~~~v~----i~vg~-----------------~~l~~~~~-------i----~q~~------------- 354 (545)
T PTZ00110 330 -C---------KEEPVH----VNVGS-----------------LDLTACHN-------I----KQEV------------- 354 (545)
T ss_pred -h---------ccCCEE----EEECC-----------------CccccCCC-------e----eEEE-------------
Confidence 0 000000 00000 00000000 0 0000
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
.++....|...|..+|..+...+.++||||+....++.|...|...|+..+.+||.++.++|.++++.|+.+..
T Consensus 355 ------~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 355 ------FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred ------EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 00112347788888888877678999999999999999999999999999999999999999999999988766
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
. +||+|+++++|||++++++||+||+++++..|+||+||++|.|.+-. +|.|++.+
T Consensus 429 ~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 429 P---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred c---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 5 79999999999999999999999999999999999999999997644 45556554
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=9.9e-26 Score=283.79 Aligned_cols=318 Identities=20% Similarity=0.302 Sum_probs=224.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa---P 1164 (2693)
..+.|+|.+++..++. +.+.|+..+||+|||..++..+...+........+|||||+.. ..||.+++++++ +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 4688999999998775 7889999999999998877666655543332334799999855 578999988764 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka 1242 (2693)
.+++..++|......+. .....+.+|+|+|++.+.....+..+...++++|||||||+|.+... .+...+..+..
T Consensus 101 ~~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred CcEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc
Confidence 67887777765443322 11236789999999999876655555566789999999999876432 23334444433
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...|++|||+- .++..+. ..|..
T Consensus 178 ~~q~ll~SAT~~----~~~~~l~---------------~~~~~------------------------------------- 201 (460)
T PRK11776 178 RRQTLLFSATYP----EGIAAIS---------------QRFQR------------------------------------- 201 (460)
T ss_pred ccEEEEEEecCc----HHHHHHH---------------HHhcC-------------------------------------
Confidence 34688999972 1111100 00000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
-|.. +.+... ..... ..+-|+.
T Consensus 202 ---------~~~~----i~~~~~-------------------~~~~~-----------i~~~~~~--------------- 223 (460)
T PRK11776 202 ---------DPVE----VKVEST-------------------HDLPA-----------IEQRFYE--------------- 223 (460)
T ss_pred ---------CCEE----EEECcC-------------------CCCCC-----------eeEEEEE---------------
Confidence 0000 000000 00000 0000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
+....|+..|..+|... ...++||||+....++.+.++|...|+.+..+||.++..+|+.+++.|+++...
T Consensus 224 ----~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--- 294 (460)
T PRK11776 224 ----VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--- 294 (460)
T ss_pred ----eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---
Confidence 01122777888888643 357899999999999999999999999999999999999999999999887665
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+||+|+++++|||++++++||+||+++++..|+||+||++|.|+.- .+|.|++.+
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 8999999999999999999999999999999999999999999753 455555543
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=1.6e-25 Score=281.99 Aligned_cols=313 Identities=17% Similarity=0.251 Sum_probs=215.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC------CCCEEEEecCch-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND------RGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~------~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
..+.++|.+++..++. +.+.|+..+||+|||+.++..+...+..... ...+|||||+.. ..||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 4688999999987775 7889999999999999987766655433221 113799999855 5789999988
Q ss_pred HCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHH
Q 000047 1162 WAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADL 1237 (2693)
Q Consensus 1162 waP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraL 1237 (2693)
|+. .++++.++|......+.. .....++|+|+|++.|........+...++++|||||||+|..... .+...+
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il 174 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMM---KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHH---HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHH
Confidence 764 456666666554333221 2246789999999999765544455566789999999999876442 223334
Q ss_pred Hhhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1238 KHYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1238 k~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
..+.. ...|++|||.-. .+.++ ... ++..|....
T Consensus 175 ~~l~~~~q~l~~SAT~~~-~~~~l---~~~--------------~~~~~~~i~--------------------------- 209 (456)
T PRK10590 175 AKLPAKRQNLLFSATFSD-DIKAL---AEK--------------LLHNPLEIE--------------------------- 209 (456)
T ss_pred HhCCccCeEEEEeCCCcH-HHHHH---HHH--------------HcCCCeEEE---------------------------
Confidence 44433 346889999621 11111 100 000000000
Q ss_pred hhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1317 PFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
+.++ ........ .+..
T Consensus 210 --~~~~------~~~~~~i~~~~~~------------------------------------------------------- 226 (456)
T PRK10590 210 --VARR------NTASEQVTQHVHF------------------------------------------------------- 226 (456)
T ss_pred --Eecc------cccccceeEEEEE-------------------------------------------------------
Confidence 0000 00000000 0000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
+....|.++|..++.. ...+++||||.....++.|.++|...|+....+||.++.++|..+++.|+++
T Consensus 227 ----------~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g 294 (456)
T PRK10590 227 ----------VDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG 294 (456)
T ss_pred ----------cCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0001234444554442 2357899999999999999999999999999999999999999999999887
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
... +||+|+++++|||++++++||+||+++++..|+|++||++|.|.+..+.+
T Consensus 295 ~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 295 DIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred CCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 655 89999999999999999999999999999999999999999997655443
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=2e-25 Score=278.90 Aligned_cols=317 Identities=16% Similarity=0.210 Sum_probs=218.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCCEEEEecCc-hHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGPFLVVVPSS-VLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP~LIVVPtS-LL~QW~eEfeKwa 1163 (2693)
..++++|.+++..++. +.+.|+...||+|||+.++..+...+... .....+|||+|+. |..||.+.+..|+
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4688999999988774 77899999999999999876655443221 1123589999986 4577888887775
Q ss_pred C--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHh
Q 000047 1164 P--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKH 1239 (2693)
Q Consensus 1164 P--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~ 1239 (2693)
. ++.+..+.|....... .......++|+|+|++.|........+....+++|||||||+|..... .+...+..
T Consensus 98 ~~~~~~v~~~~gg~~~~~~---~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~ 174 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNH---AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAE 174 (434)
T ss_pred ccCCcEEEEEECCCCHHHH---HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh
Confidence 3 4677777776543321 123345789999999999876655556666789999999999976442 22222222
Q ss_pred hc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1240 YQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1240 Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
+. ....+++|||+-...+.+ |..++..
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~---------------------------------- 202 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQD------------------FAERLLN---------------------------------- 202 (434)
T ss_pred CccccEEEEEEeecCHHHHHH------------------HHHHHcc----------------------------------
Confidence 22 234588999973211111 1111100
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
-| .. +.+..... . +....|.+..
T Consensus 203 ------------~~--~~--i~~~~~~~------------------~-----------~~~i~~~~~~------------ 225 (434)
T PRK11192 203 ------------DP--VE--VEAEPSRR------------------E-----------RKKIHQWYYR------------ 225 (434)
T ss_pred ------------CC--EE--EEecCCcc------------------c-----------ccCceEEEEE------------
Confidence 00 00 00000000 0 0000000000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.-....|..+|..++.. ....++||||.....++.|..+|...|+....++|.++..+|..+++.|+++...
T Consensus 226 ------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~ 297 (434)
T PRK11192 226 ------ADDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN 297 (434)
T ss_pred ------eCCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc
Confidence 00012366777777753 2467999999999999999999999999999999999999999999999887665
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|+++++|||++++++||+||+++++..|+||+||++|.|.+..+.++
T Consensus 298 ---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 298 ---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred ---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 899999999999999999999999999999999999999999976554444
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=4.7e-25 Score=278.95 Aligned_cols=319 Identities=17% Similarity=0.266 Sum_probs=217.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-------CCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND-------RGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-------~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..++++|.+++..++. +.+.|++..||+|||+.++..+...+..... ....|||+|+.. ..||.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4689999999987664 8899999999999999887655544333211 234799999855 577888888
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNAD 1236 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--Klsra 1236 (2693)
.++. ++.+..++|........ ..+....++|+|+|+++|........+...++++|||||||++.+... .+.+.
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i 261 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQI 261 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHH
Confidence 7754 46677777754332221 223345789999999999765544444555678999999999976432 23333
Q ss_pred HHhhc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1237 LKHYQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1237 Lk~Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+..+. ....+++|||... ++.++.. .|...
T Consensus 262 ~~~~~~~~~~q~i~~SAT~~~-~~~~~~~-----------------~~~~~----------------------------- 294 (475)
T PRK01297 262 IRQTPRKEERQTLLFSATFTD-DVMNLAK-----------------QWTTD----------------------------- 294 (475)
T ss_pred HHhCCCCCCceEEEEEeecCH-HHHHHHH-----------------HhccC-----------------------------
Confidence 44332 2356888888521 1111100 00000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
|. .+.+... ...... + . .|-+
T Consensus 295 ------------------~~----~v~~~~~---------------~~~~~~---~-------~---~~~~--------- 315 (475)
T PRK01297 295 ------------------PA----IVEIEPE---------------NVASDT---V-------E---QHVY--------- 315 (475)
T ss_pred ------------------CE----EEEeccC---------------cCCCCc---c-------c---EEEE---------
Confidence 00 0000000 000000 0 0 0000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+....|..+|..+|.. ....++||||+....++.|.++|...|+.+..++|.++.++|.++++.|+
T Consensus 316 -----------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr 382 (475)
T PRK01297 316 -----------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR 382 (475)
T ss_pred -----------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh
Confidence 01123466677777653 33579999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+++.. +||+|+++++|||+.++++||+||++++...|+|++||++|.|+.-. ++.|+..
T Consensus 383 ~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 383 EGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred CCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 87765 79999999999999999999999999999999999999999997543 3444443
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=4.3e-25 Score=275.35 Aligned_cols=318 Identities=15% Similarity=0.193 Sum_probs=217.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..+.+.|.+++..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+.. ..||.+++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 3677899999987765 789999999999999998766554332211 1224799999855 478888887
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNAD 1236 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--Klsra 1236 (2693)
.++. ++++..++|........ ......++|+|+|++.|........+...++.+|||||||+|.+... .+...
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i 181 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWL 181 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHH
Confidence 7753 46777777654433221 12235689999999999876655566667889999999999865432 22222
Q ss_pred HHhhcc---cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1237 LKHYQS---SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1237 Lk~Lka---~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+..+.. ...+++|||.-. .+.++. ..++.
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~------------------------------ 213 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMN------------------------------ 213 (423)
T ss_pred HHhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCC------------------------------
Confidence 333321 223677887521 000000 00000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
-|... .+. ... ..... ..+.++.
T Consensus 214 -----------------~p~~i--~v~-~~~-------------------~~~~~-----------i~~~~~~------- 236 (423)
T PRK04837 214 -----------------NPEYV--EVE-PEQ-------------------KTGHR-----------IKEELFY------- 236 (423)
T ss_pred -----------------CCEEE--EEc-CCC-------------------cCCCc-----------eeEEEEe-------
Confidence 01000 000 000 00000 0000000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.....|+.+|..++.. ....++||||+....++.|..+|...|+.+..++|.++.++|.++++.|+
T Consensus 237 ------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~ 302 (423)
T PRK04837 237 ------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT 302 (423)
T ss_pred ------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH
Confidence 0112377777777764 24679999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+++.. +||+|+++++|||++++++||+||+|+++..|+||+||++|.|+.-. ++.|++.
T Consensus 303 ~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 303 RGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred cCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 88766 89999999999999999999999999999999999999999996644 3444443
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=6.2e-25 Score=277.82 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=215.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..++|+|.+++..++. +.+.|+..+||+|||+.++..+.. ..+..|||+|+ +|+.+|...+..+. +.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 5799999999998775 678999999999999877544432 13458999998 55677888887654 44
Q ss_pred EEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhcc-CCCcc-cccCccEEEEccccccccccch---HHH----H
Q 000047 1168 KIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKH-DRPKL-SKIQWHYIIIDEGHRIKNASCK---LNA----D 1236 (2693)
Q Consensus 1168 VIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~-Dr~~L-~kikWd~VIIDEAHRIKN~sSK---lsr----a 1236 (2693)
...+.+... .+..++ ..+..+.++|+++|++.+.... ....+ ...++.+|||||||++..+... .+. .
T Consensus 78 ~~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 555555432 222232 3345677999999999986532 11123 4457899999999999765422 112 2
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
...+.....++||||+-.....++...+.+-.|.++.. .|.
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~--------------------------------- 197 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD--------------------------------- 197 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC---------------------------------
Confidence 23345567899999996555555555444332222100 000
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.|.. ...+..
T Consensus 198 --------------r~nl-~~~v~~------------------------------------------------------- 207 (470)
T TIGR00614 198 --------------RPNL-YYEVRR------------------------------------------------------- 207 (470)
T ss_pred --------------CCCc-EEEEEe-------------------------------------------------------
Confidence 0000 000000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.....+..|.++|.+ ...+.++||||.....++.|.++|...|+.+..+||+++.++|..+++.|..+.
T Consensus 208 ----------~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~ 276 (470)
T TIGR00614 208 ----------KTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE 276 (470)
T ss_pred ----------CCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC
Confidence 000012223333332 234667899999999999999999999999999999999999999999998776
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.. +|++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+|
T Consensus 277 ~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 277 IQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred Cc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 65 799999999999999999999999999999999999999999988776555
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=7.6e-25 Score=280.07 Aligned_cols=320 Identities=17% Similarity=0.220 Sum_probs=218.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-------NDRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..++|+|.+++..++. +.+.|+..+||+|||+.++..+...+... ......|||+|+.. ..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 4789999999988874 78999999999999998876554332211 12234799999865 477888888
Q ss_pred HHCCC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHH
Q 000047 1161 FWAPR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNAD 1236 (2693)
Q Consensus 1161 KwaPs--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsra 1236 (2693)
.+... +++..+.|......... . ...+++|+|+|++.|.....+..+...+..+|||||||+|.... ..+.+.
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~--~-l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY--R-IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH--H-hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 77643 44444444433222221 1 23568999999999876655555556678999999999997643 233444
Q ss_pred HHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
+..+.....+++|||.-. .+.. +..++..
T Consensus 295 ~~~l~~~q~l~~SATl~~-~v~~------------------l~~~~~~-------------------------------- 323 (518)
T PLN00206 295 FQALSQPQVLLFSATVSP-EVEK------------------FASSLAK-------------------------------- 323 (518)
T ss_pred HHhCCCCcEEEEEeeCCH-HHHH------------------HHHHhCC--------------------------------
Confidence 555666677899999621 1110 1111100
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
... .+.+.- .. ..... +.+ -++
T Consensus 324 ----------------~~~--~i~~~~-----------------~~-~~~~~-------v~q----~~~----------- 345 (518)
T PLN00206 324 ----------------DII--LISIGN-----------------PN-RPNKA-------VKQ----LAI----------- 345 (518)
T ss_pred ----------------CCE--EEEeCC-----------------CC-CCCcc-------eeE----EEE-----------
Confidence 000 000000 00 00000 000 000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
.+....|...|.++|........++|||+.....++.|...|.. .|+++..+||+++.++|..+++.|+++
T Consensus 346 --------~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G 417 (518)
T PLN00206 346 --------WVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG 417 (518)
T ss_pred --------eccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC
Confidence 01112355667777766555567899999999999999999974 699999999999999999999999988
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
..+ +||+|+++++|||+..+++||+||+|.+...|+||+||++|.|..- .++.|++.
T Consensus 418 ~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~ 474 (518)
T PLN00206 418 EVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNE 474 (518)
T ss_pred CCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEch
Confidence 766 8999999999999999999999999999999999999999999653 44445554
No 35
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=274.39 Aligned_cols=440 Identities=19% Similarity=0.188 Sum_probs=259.7
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs 1165 (2693)
....||+||.+.+.-.+ +.|.|+|.+||+|||++|+-++..+++.... +.+++.+|+.- +.|....|..++-.
T Consensus 59 ~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred CcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc
Confidence 34689999999887665 6899999999999999998888888877665 66999999854 56666777777644
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccc-cCccEEEEccccccccccchHHHHHHhh----
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSK-IQWHYIIIDEGHRIKNASCKLNADLKHY---- 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~k-ikWd~VIIDEAHRIKN~sSKlsraLk~L---- 1240 (2693)
-.+....|+...+... .......+|+|.|++.+.+.+....... -.|.+||||||||..... .+...++.|
T Consensus 133 ~~~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~-~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH-PYNNIMREYLDLK 208 (746)
T ss_pred ccceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccc-cHHHHHHHHHHhh
Confidence 5555555553222111 1223567999999999999776666555 679999999999974322 223333222
Q ss_pred -cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 -QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 -ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
...+.|+|||||= ++..+..+.+.=|... +.-... .-...++............+. .+......+|..+++|++
T Consensus 209 ~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~--ssi~~~y~~lr~~~~i~v~~~-~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 209 NQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTE--SSIKSNYEELREHVQIPVDLS-LCERDIEDPFGMIIEPLL 283 (746)
T ss_pred hccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchh--hhhhhhHHHHhccCcccCcHH-HhhhhhhhhHHHHHHHHH
Confidence 2336799999997 7777777666655444 211100 000111111111111111111 122234556777777776
Q ss_pred hhhhHhHHhhcCccceeEeeecccc-------------HHHH------HHHHHHHHHhhccCCCCCcchhHHHHHHHHhh
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEAS-------------AYQK------LLMKRVEENLGSIGNSKGRSVHNSVMELRNIC 1380 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLS-------------a~Qk------~LYk~Lee~l~si~~sk~rslln~LmqLRKIC 1380 (2693)
.+-... .|.+....-...... .-|+ .+++.....+.. .+-...+.+..+....
T Consensus 284 ~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~----~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 284 QQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS----DGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHhc----CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh----cchhhHHHHhhhhhhc
Confidence 443211 111111000000000 0011 001100000000 0000111111111111
Q ss_pred CCccccc------------hhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhc--CCCeEEEEEcchHHHHHHHHHH
Q 000047 1381 NHPYLSQ------------LHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1381 nHPyL~~------------~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLka--tGhKVLIFSQft~tLDILed~L 1446 (2693)
..-++.. ...+....+ .+.....-...+|++.|.++|.+... ...|+|||+.++..++.|..+|
T Consensus 356 ~e~~~~k~~~~~~e~~~~~~~~~~m~~~--~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l 433 (746)
T KOG0354|consen 356 EEVALKKYLKLELEARLIRNFTENMNEL--EHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWL 433 (746)
T ss_pred cccchhHHHHHHhcchhhHHHHHHHHhh--hhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHH
Confidence 0000000 000000000 00001111346799999999987754 4689999999999999999998
Q ss_pred h---hcCCeEEEEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhh
Q 000047 1447 T---FKQYRYLRLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1447 ~---~rGikylRLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQ 1515 (2693)
. ..|++...+-| ++++.+.+++|++|++|+.+ +||+|.+|.||||+..||.||.||..-||...+|
T Consensus 434 ~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQ 510 (746)
T KOG0354|consen 434 LQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQ 510 (746)
T ss_pred HhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHH
Confidence 7 23455555555 58889999999999998877 8999999999999999999999999999999999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHHHHHHH-HHHHHHHHhhhcc
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEEQVRAS-AEHKLGVANQSIT 1560 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEEkIler-aekKl~Li~kVIq 1560 (2693)
|+|| +|.-+. +++-|.+ +.+..-+++ ...|..+.+..|.
T Consensus 511 rrGR-gRa~ns---~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 511 RRGR-GRARNS---KCVLLTT--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred Hhcc-ccccCC---eEEEEEc--chhHHHHHHHHHhHHHHHHHHHH
Confidence 9999 775444 4444444 444443333 4556666665554
No 36
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.3e-25 Score=275.13 Aligned_cols=315 Identities=20% Similarity=0.308 Sum_probs=225.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCC-EEEEecCchH-HHHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGP-FLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP-~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.|.|..+...++. +.++|..+.||+|||+..+..+...+... ...+| +||++|+..| .|...++..+
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 566778888777776 88999999999999998876554444431 22345 8999999777 5578888888
Q ss_pred CCCCc--EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 APRIH--KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aPsLk--VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
...+. .++++|......++. ....+++|+|+|+.+|+..++...+...++.|+|+|||++|.... .+..+.+.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 76544 555555443333322 224679999999999999888888888899999999999997644 45556666
Q ss_pred hh-cccc-cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1239 HY-QSSH-RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1239 ~L-ka~~-RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
.+ .+.+ .|+.|||-- .| ++.+-.
T Consensus 266 ~i~~~~rQtlm~saTwp--------------------------~~-----------------------------v~~lA~ 290 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWP--------------------------KE-----------------------------VRQLAE 290 (519)
T ss_pred hcCCCcccEEEEeeecc--------------------------HH-----------------------------HHHHHH
Confidence 66 3332 455555530 00 011111
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.|+ . .|..+... .. +.......+.++-..|.
T Consensus 291 ~fl---------~-~~~~i~ig-~~-----------------------~~~~a~~~i~qive~~~--------------- 321 (519)
T KOG0331|consen 291 DFL---------N-NPIQINVG-NK-----------------------KELKANHNIRQIVEVCD--------------- 321 (519)
T ss_pred HHh---------c-CceEEEec-ch-----------------------hhhhhhcchhhhhhhcC---------------
Confidence 111 1 11111110 00 00001111122222221
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
..+|...|..+|.++. ..+.||||||+....++.|..+|...+|+.+.|||..++.+|..+++.|+++
T Consensus 322 -----------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 322 -----------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred -----------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC
Confidence 2358888888888876 4567999999999999999999999999999999999999999999999988
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+.+ +||+|+++++|||+.++|+||+||+|-|...|+||+||++|.|++-..
T Consensus 391 ~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 391 KSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred Ccc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 877 899999999999999999999999999999999999999998876443
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1e-24 Score=281.46 Aligned_cols=314 Identities=16% Similarity=0.252 Sum_probs=213.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCch-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSV-LPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSL-L~QW~eEfe 1160 (2693)
..+.|.|.++|..++. +.+.|+..+||+|||+.++..+...+.... ....+|||||+.. ..|+.+++.
T Consensus 30 ~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4688999999998875 889999999999999998776654432211 1235899999855 578988998
Q ss_pred HHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHHH
Q 000047 1161 FWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLNA 1235 (2693)
Q Consensus 1161 KwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Klsr 1235 (2693)
+|.. ++++..++|......+ .......++|+|+|++.|....... .+....+++|||||||+|..... .+..
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q---~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~ 182 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQ---RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRF 182 (572)
T ss_pred HHhccCCceEEEEECCCCHHHH---HHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHH
Confidence 8865 3566666665443221 1122357899999999987654332 34445678999999999865332 2223
Q ss_pred HHHhhc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1236 DLKHYQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1236 aLk~Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.+..+. ....|++|||.-. . +..++. .++..
T Consensus 183 il~~lp~~~~~q~ll~SATl~~-~---v~~l~~--------------~~l~~---------------------------- 216 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSH-R---VLELAY--------------EHMNE---------------------------- 216 (572)
T ss_pred HHHhcccccCceEEEEeCCccH-H---HHHHHH--------------HHhcC----------------------------
Confidence 333333 2345788888521 1 111100 00000
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
|... ++.... ... . .+ .|-+++
T Consensus 217 -------------------p~~i--~v~~~~-----------------~~~---~-------~i----~q~~~~------ 238 (572)
T PRK04537 217 -------------------PEKL--VVETET-----------------ITA---A-------RV----RQRIYF------ 238 (572)
T ss_pred -------------------CcEE--Eecccc-----------------ccc---c-------ce----eEEEEe------
Confidence 0000 000000 000 0 00 000000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
.....|+.+|..+|.. ..+.++||||+....++.|.++|...|+.+..|||.++..+|.++++.|
T Consensus 239 -------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 239 -------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred -------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 0011255666666653 3478999999999999999999999999999999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+++... +||+|+++++|||+..+++||+||.+|++..|+||+||++|.|..-.+.+
T Consensus 304 r~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 304 QKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 887665 89999999999999999999999999999999999999999997654433
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1e-23 Score=274.38 Aligned_cols=314 Identities=14% Similarity=0.189 Sum_probs=219.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwa---P 1164 (2693)
.++.|+|.+++.+++. +.+.|+...||+|||++++..+...+........+|||||+. |..||.++|.+|. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4789999999988775 778999999999999987655554443333333479999985 4588988887764 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka 1242 (2693)
++.++.++|......++. ......+|||+|++.|...+.+..+...++.+|||||||.|.+... .+...+..+..
T Consensus 103 ~i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~ 179 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 (629)
T ss_pred CceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC
Confidence 677777777654332221 1235789999999999876666566666789999999999866542 23344445543
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...+++|||.- ..+.++. ..| +
T Consensus 180 ~~q~llfSAT~p-~~i~~i~------------------~~~------------------------------------l-- 202 (629)
T PRK11634 180 GHQTALFSATMP-EAIRRIT------------------RRF------------------------------------M-- 202 (629)
T ss_pred CCeEEEEEccCC-hhHHHHH------------------HHH------------------------------------c--
Confidence 34578888851 0000000 000 0
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
.......+.... .... ...+-|+
T Consensus 203 ----------~~~~~i~i~~~~--------------------~~~~-----------~i~q~~~---------------- 225 (629)
T PRK11634 203 ----------KEPQEVRIQSSV--------------------TTRP-----------DISQSYW---------------- 225 (629)
T ss_pred ----------CCCeEEEccCcc--------------------ccCC-----------ceEEEEE----------------
Confidence 000000000000 0000 0000010
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.+....|++.|.++|.. ....++||||.....++.|..+|...||....|+|.+++.+|..++++|+.+..+
T Consensus 226 ---~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--- 297 (629)
T PRK11634 226 ---TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--- 297 (629)
T ss_pred ---EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---
Confidence 01112377778887764 2356899999999999999999999999999999999999999999999887765
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|+++++|||++.+++||+||+++++..|+||+||++|.|..-.+.+
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 89999999999999999999999999999999999999999997654333
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=2.6e-24 Score=264.92 Aligned_cols=321 Identities=17% Similarity=0.262 Sum_probs=216.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--s 1165 (2693)
..+.++|.+++..++. +.+.|+..+||+|||++++..+...+........+|||+|...| .||...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 4689999999998775 77899999999999998876666655443334458999998554 667777766653 3
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka- 1242 (2693)
+.+..+.|....+... .......+|+|+|++.+........+...++++|||||||++.... ..+...++.+..
T Consensus 125 ~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~ 201 (401)
T PTZ00424 125 VRCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPD 201 (401)
T ss_pred ceEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCC
Confidence 4455555654433222 1123457999999999876554445556678999999999986533 234444555533
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
...+++|||+-. .+.+ +...| + +
T Consensus 202 ~~~i~~SAT~~~-~~~~------------------~~~~~------------------------------------~-~- 224 (401)
T PTZ00424 202 VQVALFSATMPN-EILE------------------LTTKF------------------------------------M-R- 224 (401)
T ss_pred cEEEEEEecCCH-HHHH------------------HHHHH------------------------------------c-C-
Confidence 456889999621 1110 00000 0 0
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
-|.. ..+.. . .. ... .++ +-++. .
T Consensus 225 --------~~~~--~~~~~--~---------------~~---~~~-------~~~----~~~~~-~-------------- 248 (401)
T PTZ00424 225 --------DPKR--ILVKK--D---------------EL---TLE-------GIR----QFYVA-V-------------- 248 (401)
T ss_pred --------CCEE--EEeCC--C---------------Cc---ccC-------Cce----EEEEe-c--------------
Confidence 0000 00000 0 00 000 000 00000 0
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.....++..|..++..+ ...++||||.....++.+..+|...++.+..+||+++.++|..+++.|+.+... +
T Consensus 249 ---~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---v 320 (401)
T PTZ00424 249 ---EKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---V 320 (401)
T ss_pred ---ChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---E
Confidence 00011344555555432 357899999999999999999999999999999999999999999999887765 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|++|+++++|||++++++||+||++++...|.|++||++|.|.. -.+|.|++.+.
T Consensus 321 LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 321 LITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred EEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999854 44566666543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=6.8e-24 Score=275.02 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+||+|.+++..++. +.+.|++.+||.|||+.++..+. + ..+..|||+|. +|+.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 5799999999988775 77899999999999998764432 2 13458999997 5668888888775 355
Q ss_pred EEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-------hHHHHHH
Q 000047 1168 KIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-------KLNADLK 1238 (2693)
Q Consensus 1168 VIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-------KlsraLk 1238 (2693)
+..+.+... ++..++ ..+..+.++|++.|++.+........+...++++|||||||++..+.. ++.....
T Consensus 80 ~~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 666655432 222222 334567899999999998654333455667899999999999865432 2222233
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.....++||||+-.....+++..|.+-.+..|.. .|
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~------------------------------------ 196 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF------------------------------------ 196 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC------------------------------------
Confidence 444555899999996555555544433222211100 00
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
..|.....+
T Consensus 197 -----------~r~nl~~~v------------------------------------------------------------ 205 (591)
T TIGR01389 197 -----------DRPNLRFSV------------------------------------------------------------ 205 (591)
T ss_pred -----------CCCCcEEEE------------------------------------------------------------
Confidence 000000000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.....+...|.++|... .+.++||||.....++.|.++|...|+.+..+||+++.++|..+++.|..+...
T Consensus 206 -------~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~ 276 (591)
T TIGR01389 206 -------VKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK 276 (591)
T ss_pred -------EeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 00011334444455432 267899999999999999999999999999999999999999999999887654
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|.++|+|||++++++||+||+++|...|.|++||++|.|....+.+
T Consensus 277 ---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 277 ---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred ---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 89999999999999999999999999999999999999999997666543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=9.8e-24 Score=274.31 Aligned_cols=305 Identities=18% Similarity=0.173 Sum_probs=212.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..++|+|.+++..++. +.++|+..+||.|||++++..+. +. .+.+|||+|. +|+.+|...|.... +.
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999987764 78999999999999987754443 21 3458999997 55677888887653 44
Q ss_pred EEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch---HHHHH----H
Q 000047 1168 KIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK---LNADL----K 1238 (2693)
Q Consensus 1168 VIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK---lsraL----k 1238 (2693)
...+.+.... ....+ ..+..+..+++++|++.+........+...++++|||||||++-.+... .++.+ .
T Consensus 92 ~~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~ 170 (607)
T PRK11057 92 AACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (607)
T ss_pred EEEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH
Confidence 5555444322 22222 2344567899999999987533233455567899999999998764321 12223 2
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.+.....++||||+-.....+++..+.+..|.++.. .|.
T Consensus 171 ~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~----------------------------------- 209 (607)
T PRK11057 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD----------------------------------- 209 (607)
T ss_pred hCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC-----------------------------------
Confidence 334556799999986555555554443322211100 000
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
.|.. .+.+
T Consensus 210 ------------r~nl-~~~v----------------------------------------------------------- 217 (607)
T PRK11057 210 ------------RPNI-RYTL----------------------------------------------------------- 217 (607)
T ss_pred ------------CCcc-eeee-----------------------------------------------------------
Confidence 0000 0000
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+....++..|..++.. ..+.++||||..+..++.+...|...|+.+..+||+++.++|.++++.|..+...
T Consensus 218 -------~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 218 -------VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred -------eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 0000012223333332 3467999999999999999999999999999999999999999999999887665
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+
T Consensus 289 ---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 289 ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred ---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 79999999999999999999999999999999999999999997765443
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.92 E-value=9.6e-26 Score=265.34 Aligned_cols=372 Identities=22% Similarity=0.318 Sum_probs=247.4
Q ss_pred cccccccccchhcccccccccccchhHHhHHHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCC
Q 000047 1031 NEMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQL 1110 (2693)
Q Consensus 1031 ~e~de~~~~sv~E~~e~a~e~ede~~~~k~~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~l 1110 (2693)
..|.+.+...+...|....+.++.+..++.|.+....-..+ .-+++.-.. ...|.|.+|+.-+++ ++
T Consensus 142 r~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L-~~lk~KGI~--------~PTpIQvQGlPvvLs----GR 208 (610)
T KOG0341|consen 142 RKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLL-RGLKKKGIV--------HPTPIQVQGLPVVLS----GR 208 (610)
T ss_pred HHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHH-HHHHhcCCC--------CCCceeecCcceEee----cC
Confidence 34555555556667788888888888888877654332221 112222222 334568889887776 77
Q ss_pred CeEEEcCCCCChHHHHHHHHHHH-HHh------cCCCCCE-EEEecCchHHHHHHH-HHHH--------CCCCcEEEEcC
Q 000047 1111 NGILADEMGLGKTVQVIALICYL-MET------KNDRGPF-LVVVPSSVLPGWESE-INFW--------APRIHKIVYCG 1173 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~L-le~------k~~~gP~-LIVVPtSLL~QW~eE-feKw--------aPsLkVIvy~G 1173 (2693)
..|-..-+|+|||++....+..+ ++. ....||+ |||||...|.....+ ++.| +|.++..++.|
T Consensus 209 DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciG 288 (610)
T KOG0341|consen 209 DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIG 288 (610)
T ss_pred ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhc
Confidence 77777789999998765433322 221 1234565 999999877543333 3333 37788888888
Q ss_pred ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcccc-cccccc
Q 000047 1174 PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSSH-RLLLTG 1250 (2693)
Q Consensus 1174 s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~~-RLLLTG 1250 (2693)
....+.++ .....+.+|||+|+.+|+..+.+..+...-+.|+++|||+||-.... -....+..|++.+ .||+||
T Consensus 289 G~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSA 365 (610)
T KOG0341|consen 289 GVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSA 365 (610)
T ss_pred CccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeec
Confidence 77766543 34457899999999999988888788888899999999999966442 1222222333322 244444
Q ss_pred cCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhc
Q 000047 1251 TPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENE 1330 (2693)
Q Consensus 1251 TPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVeke 1330 (2693)
|-
T Consensus 366 TM------------------------------------------------------------------------------ 367 (610)
T KOG0341|consen 366 TM------------------------------------------------------------------------------ 367 (610)
T ss_pred cc------------------------------------------------------------------------------
Confidence 42
Q ss_pred CccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhccc
Q 000047 1331 LPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCG 1410 (2693)
Q Consensus 1331 LP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~Sg 1410 (2693)
|.|+..+. ...|.+-+.-+++..+ ..-++.+.++ .+++..+
T Consensus 368 -P~KIQ~FA-------kSALVKPvtvNVGRAG----AAsldViQev---------------------------EyVkqEa 408 (610)
T KOG0341|consen 368 -PKKIQNFA-------KSALVKPVTVNVGRAG----AASLDVIQEV---------------------------EYVKQEA 408 (610)
T ss_pred -cHHHHHHH-------HhhcccceEEeccccc----ccchhHHHHH---------------------------HHHHhhh
Confidence 11110000 0000000000111111 1112222111 1233445
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
|+.+|.+.| .++..+|||||....-+|.|.+||-.+|+..+.|||+.++++|...|..|+.+..+ +|++|++++
T Consensus 409 KiVylLeCL---QKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVATDVAS 482 (610)
T KOG0341|consen 409 KIVYLLECL---QKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVATDVAS 482 (610)
T ss_pred hhhhHHHHh---ccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEecchh
Confidence 666666655 56778999999999999999999999999999999999999999999999999888 899999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
.|||++++.+||+||+|-...+|.+||||++|-|.+-- .-.||..++-|..
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esv 533 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESV 533 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHH
Confidence 99999999999999999999999999999999997643 2334555544433
No 43
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.92 E-value=5.8e-24 Score=258.61 Aligned_cols=425 Identities=18% Similarity=0.233 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccccccccchhcccccccccccchhHHhHHHHhhhHHHHhhhcc
Q 000047 1000 RVNKLLKETEKYLQKLGSKLQEAKSMASHFEN----EMDETQTVSVVEKYEPAVENEDESDQAKHYLESNEKYYLMAHSI 1075 (2693)
Q Consensus 1000 rL~~LL~QTe~yl~~L~~~v~~~k~~~~~~e~----e~de~~~~sv~E~~e~a~e~ede~~~~k~~~e~~~~yy~lah~i 1075 (2693)
|.....+|.+..+.+....-....|+..||.. +|.+.++..+.|.|........-+.+...|.+.......+. -|
T Consensus 182 ~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~-~I 260 (673)
T KOG0333|consen 182 RTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLS-VI 260 (673)
T ss_pred cchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHH-HH
Confidence 44556677777777777776777788888854 67777788888888888888777788888877764333221 12
Q ss_pred ccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh--------cCCCCC-EEEE
Q 000047 1076 KESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET--------KNDRGP-FLVV 1146 (2693)
Q Consensus 1076 kEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~--------k~~~gP-~LIV 1146 (2693)
.+.- ....-|.|+.++--++. +.+.|+..|+|+|||...+--|.-.+.. ....+| .+|+
T Consensus 261 ~~~~--------y~eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 261 KKPG--------YKEPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred HhcC--------CCCCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 2221 22445679998875554 7888999999999996555443333322 223355 4899
Q ss_pred ecCchHH-HHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccc
Q 000047 1147 VPSSVLP-GWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223 (2693)
Q Consensus 1147 VPtSLL~-QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEA 1223 (2693)
+|+..|. |..+|-.+|.- +++++.+.|...-..+-|+ ...+.+|+|.|+..|+..+....|....+.|||+|||
T Consensus 329 aptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq---ls~gceiviatPgrLid~Lenr~lvl~qctyvvldea 405 (673)
T KOG0333|consen 329 APTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ---LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA 405 (673)
T ss_pred chHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh---hhccceeeecCchHHHHHHHHHHHHhccCceEeccch
Confidence 9997775 46778777753 4677777776543332222 2357899999999999988888899999999999999
Q ss_pred cccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHH
Q 000047 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEE 1303 (2693)
Q Consensus 1224 HRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe 1303 (2693)
.+|..... ...+.=+|+.-|..|--. +.+++..|
T Consensus 406 drmiDmgf---------E~dv~~iL~~mPssn~k~---------------~tde~~~~---------------------- 439 (673)
T KOG0333|consen 406 DRMIDMGF---------EPDVQKILEQMPSSNAKP---------------DTDEKEGE---------------------- 439 (673)
T ss_pred hhhhcccc---------cHHHHHHHHhCCccccCC---------------CccchhhH----------------------
Confidence 99976542 111111222223222100 00011100
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh--ccCCCCCcchhHHHHHHHHhhC
Q 000047 1304 NLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG--SIGNSKGRSVHNSVMELRNICN 1381 (2693)
Q Consensus 1304 ~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~--si~~sk~rslln~LmqLRKICn 1381 (2693)
.++ +..|.-. ---.+...+...|.+.-..|.+.+..... .++.... +
T Consensus 440 -----~~~---~~~~~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk--------------~ 488 (673)
T KOG0333|consen 440 -----ERV---RKNFSSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK--------------P 488 (673)
T ss_pred -----HHH---Hhhcccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC--------------C
Confidence 011 1111100 00011223334455554444444322110 0110000 0
Q ss_pred CccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 1461 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS 1461 (2693)
+|.+-+ .-..+..+.|+..|.++|... ...++|||.+..+.+|.|.+.|.+.||++++|||+-+
T Consensus 489 ~~rveQ--------------~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~ 552 (673)
T KOG0333|consen 489 TPRVEQ--------------KVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKS 552 (673)
T ss_pred ccchhe--------------EEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCcc
Confidence 111100 001234466899999999875 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++|+.++..|+.+..+ +|++|+++|+|||++++.+||+||+..+...|.+||||++|.|+.-.+ ..|++..
T Consensus 553 qeQRe~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 553 QEQRENALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 99999999999998887 899999999999999999999999999999999999999999976543 3444543
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.4e-23 Score=263.55 Aligned_cols=333 Identities=20% Similarity=0.303 Sum_probs=231.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh-cCCCCC-EEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET-KNDRGP-FLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~-k~~~gP-~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
....|.|..++..++. +.+.|..+.||+|||...+..+...+.. ...... .||++|+..| .|..+++.++..
T Consensus 50 ~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 3567789999987776 7889999999999999887766665542 222222 8999999776 567777777754
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L 1240 (2693)
.++++.++|......+. ..+.. +.+|||.|+.++.....+..|...+..++|+|||++|.+... .+...+..+
T Consensus 126 ~~~~~~~~i~GG~~~~~q~--~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~ 202 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQI--EALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL 202 (513)
T ss_pred cCCccEEEEECCCCHHHHH--HHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC
Confidence 56777777766555544 22223 599999999999988887788888899999999999977632 222333333
Q ss_pred cc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 QS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 ka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.. ...++.|||--. +++. +.+.++
T Consensus 203 p~~~qtllfSAT~~~----~i~~---------------------------------------------------l~~~~l 227 (513)
T COG0513 203 PPDRQTLLFSATMPD----DIRE---------------------------------------------------LARRYL 227 (513)
T ss_pred CcccEEEEEecCCCH----HHHH---------------------------------------------------HHHHHc
Confidence 32 334556666410 0000 000000
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
. -|. . +.+... ... .. ..+ ..+.|+.
T Consensus 228 ---------~-~p~--~--i~v~~~--------------------~~~---~~---~~~-i~q~~~~------------- 253 (513)
T COG0513 228 ---------N-DPV--E--IEVSVE--------------------KLE---RT---LKK-IKQFYLE------------- 253 (513)
T ss_pred ---------c-CCc--E--EEEccc--------------------ccc---cc---ccC-ceEEEEE-------------
Confidence 0 010 0 000000 000 00 000 0011110
Q ss_pred CCCChhhhc-ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1400 HYLPPIVRL-CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1400 ~~l~~Lvr~-SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+.. ..|+.+|..+|..... .++||||.....++.|...|..+|+++..|||++++++|.++++.|+++...
T Consensus 254 ------v~~~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~ 325 (513)
T COG0513 254 ------VESEEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR 325 (513)
T ss_pred ------eCCHHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC
Confidence 111 1499999999986543 3799999999999999999999999999999999999999999999987766
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||+...++||+||++.++..|+||+||++|.|. .-..+.|++. .-|...+..++..
T Consensus 326 ---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~--~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 326 ---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR--KGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred ---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCC--CCeEEEEeCc-HHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999994 3455666665 2255555555544
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.1e-23 Score=243.07 Aligned_cols=326 Identities=19% Similarity=0.201 Sum_probs=230.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--sL 1166 (2693)
.+-+.|.+++..++. +..+|.+.+||+|||...+..|..-+-..+..-..||++|+..|.+ ....|+.+.. ++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 344569999988875 8889999999999999887666543333333334699999988855 5666777643 57
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEcccccccccc--chHHHHHHhhccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~ 1243 (2693)
++.++.|......... ....+.+|+|+|++.|+++.. ...|..-...|+|+|||+++.|.. ..+.+.|+.++..
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8888888877655432 235689999999999998765 344666678899999999998754 3455555555443
Q ss_pred cc-ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1244 HR-LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1244 ~R-LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
++ +|.|||=
T Consensus 236 rqt~LfsATM---------------------------------------------------------------------- 245 (476)
T KOG0330|consen 236 RQTFLFSATM---------------------------------------------------------------------- 245 (476)
T ss_pred ceEEEEEeec----------------------------------------------------------------------
Confidence 33 4555553
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
+..-.+|.....++...+.. ......+..|.+ -|+|
T Consensus 246 ---------------------t~kv~kL~rasl~~p~~v~~---s~ky~tv~~lkQ----~ylf---------------- 281 (476)
T KOG0330|consen 246 ---------------------TKKVRKLQRASLDNPVKVAV---SSKYQTVDHLKQ----TYLF---------------- 281 (476)
T ss_pred ---------------------chhhHHHHhhccCCCeEEec---cchhcchHHhhh----heEe----------------
Confidence 11111111000000000000 001111111111 1222
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
+...-|-.+|..+|.++. |..+||||..-.+.+.+.-+|+..|+....|+|.|++..|..+++.|+++..+ +
T Consensus 282 ---v~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---i 353 (476)
T KOG0330|consen 282 ---VPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---I 353 (476)
T ss_pred ---ccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---E
Confidence 111225567888888654 58999999999999999999999999999999999999999999999887666 8
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
|++|+++++|||++.+|.||+||.|-+-..|++|.||+.|.| +.-.++.||+.-.|| ++++.
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qrI 415 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQRI 415 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHHH
Confidence 999999999999999999999999999999999999999999 566778888874444 44443
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=1.4e-22 Score=268.31 Aligned_cols=311 Identities=18% Similarity=0.156 Sum_probs=210.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
...|||+|.++|..++. +.++|+...||.|||+.+...+... .+..|||+|+ +|+.++...+... ++
T Consensus 458 ~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~~--GI 525 (1195)
T PLN03137 458 NHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQA--NI 525 (1195)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHhC--CC
Confidence 45899999999998875 8899999999999999876554321 3568999998 4555465555443 45
Q ss_pred cEEEEcCChH--HHHHHHHhh-hhcCCccEEEEcHHHHHhccC-CCcc----cccCccEEEEccccccccccch---HHH
Q 000047 1167 HKIVYCGPPE--ERRRLFKEK-IVHQKFNVLLTTYEYLMNKHD-RPKL----SKIQWHYIIIDEGHRIKNASCK---LNA 1235 (2693)
Q Consensus 1167 kVIvy~Gs~~--eRk~l~ke~-i~~~kfdVVITTYE~Lik~~D-r~~L----~kikWd~VIIDEAHRIKN~sSK---lsr 1235 (2693)
....+.+... ....++... ...+.++||++|++.|..... ...+ ....+.+|||||||++-.+... -++
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 5555555432 222232221 113679999999999863210 0111 1234789999999998765422 122
Q ss_pred H---H-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1236 D---L-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1236 a---L-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
. + ..+.....++||||.-.....|+...|.+..+.+|.. -|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccCc---------------------------
Confidence 2 2 2345566789999986665555555544332221110 0000
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
|.....++. . .
T Consensus 653 --------------------pNL~y~Vv~-k-~----------------------------------------------- 663 (1195)
T PLN03137 653 --------------------PNLWYSVVP-K-T----------------------------------------------- 663 (1195)
T ss_pred --------------------cceEEEEec-c-c-----------------------------------------------
Confidence 000000000 0 0
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
...+..|.++|... ..+...||||..+..++.|..+|...|+....+||+++.++|..++++
T Consensus 664 -----------------kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~ 725 (1195)
T PLN03137 664 -----------------KKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQ 725 (1195)
T ss_pred -----------------hhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHH
Confidence 00011222222211 124578999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
|..+... +||+|.++|+|||++++++||+||+|.+...|.|++|||+|.|....+..|+
T Consensus 726 F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 726 WSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9887765 7999999999999999999999999999999999999999999887766554
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=3.1e-21 Score=252.02 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=203.5
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+.. ...+||++|+..| .||.++|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 47999999999998875433 2467999999999999987666655543 2358999998665 789999999987
Q ss_pred -CCcEEEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc-
Q 000047 1165 -RIHKIVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk- 1241 (2693)
++++.+++|...... ......+..+..+|+|+|+..+... +.-.+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----~~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~ 383 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----VEFKRLALVIIDEQHRFGVE--QRKKLREKGQG 383 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----ccccccceEEEechhhccHH--HHHHHHHhccc
Confidence 478888888653322 2223445567899999999988642 22245789999999997422 1222222222
Q ss_pred --ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1242 --SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1242 --a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
..+.|+|||||+...+. +..+ . +..
T Consensus 384 ~~~~~~l~~SATp~prtl~----l~~~----------------~-------~l~-------------------------- 410 (630)
T TIGR00643 384 GFTPHVLVMSATPIPRTLA----LTVY----------------G-------DLD-------------------------- 410 (630)
T ss_pred CCCCCEEEEeCCCCcHHHH----HHhc----------------C-------Ccc--------------------------
Confidence 56789999999653221 1000 0 000
Q ss_pred hhhhHhHHhhcCcccee--EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1320 LRRLKHKVENELPEKIE--RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE--~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
..+...+|.... ....+..
T Consensus 411 -----~~~i~~~p~~r~~i~~~~~~~------------------------------------------------------ 431 (630)
T TIGR00643 411 -----TSIIDELPPGRKPITTVLIKH------------------------------------------------------ 431 (630)
T ss_pred -----eeeeccCCCCCCceEEEEeCc------------------------------------------------------
Confidence 000011111000 0000000
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcch--------HHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHH
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT--------RLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGA 1467 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft--------~tLDILed~L~~--rGikylRLDGSTS~eERqe 1467 (2693)
.+...+.+.+.+....+++++|||... ..+..+.+.|.. .++.+..+||.++.++|.+
T Consensus 432 ------------~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 499 (630)
T TIGR00643 432 ------------DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEA 499 (630)
T ss_pred ------------chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHH
Confidence 001122222333334577888888654 233444555543 4788999999999999999
Q ss_pred HHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEE
Q 000047 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1468 iId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
++++|+++..+ +||+|.+.++|||++++++||+||.+. +...+.|+.||++|-|....|.
T Consensus 500 i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 500 VMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 99999987766 899999999999999999999999985 6788999999999998655444
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=4.2e-21 Score=258.24 Aligned_cols=328 Identities=20% Similarity=0.200 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC-----CCCCEEEEecCchH-HHHHHH---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN-----DRGPFLVVVPSSVL-PGWESE--- 1158 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~-----~~gP~LIVVPtSLL-~QW~eE--- 1158 (2693)
..|+|+|.+++..+.. +.++|++.+||+|||+.++..+.. ++.... ....+|+|+|+..| .++...
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987654 789999999999999998765544 332211 12238999998555 555543
Q ss_pred ----HHHHC-------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc--ccCccEEEEccccc
Q 000047 1159 ----INFWA-------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHR 1225 (2693)
Q Consensus 1159 ----feKwa-------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~--kikWd~VIIDEAHR 1225 (2693)
+..|+ +.+++.+++|+.....+. .......+|+|||++.+........+. ..+.++|||||+|.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~ 183 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS 183 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh
Confidence 33443 367788888875443221 122346899999999986433222221 23568999999999
Q ss_pred ccccc--chHHHHHHh---h--cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhh
Q 000047 1226 IKNAS--CKLNADLKH---Y--QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEAL 1298 (2693)
Q Consensus 1226 IKN~s--SKlsraLk~---L--ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~ 1298 (2693)
+.+.. ..+...+.+ + ....+|+||||. .++.++.. ||...... +..
T Consensus 184 l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~------ 236 (876)
T PRK13767 184 LAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEP------ 236 (876)
T ss_pred hccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCC------
Confidence 97532 222223322 2 235679999997 23343322 22110000 000
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 000047 1299 LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRN 1378 (2693)
Q Consensus 1299 LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRK 1378 (2693)
+++.+ +...........+.++...
T Consensus 237 -----------------r~~~i------v~~~~~k~~~i~v~~p~~~--------------------------------- 260 (876)
T PRK13767 237 -----------------RDCEI------VDARFVKPFDIKVISPVDD--------------------------------- 260 (876)
T ss_pred -----------------CceEE------EccCCCccceEEEeccCcc---------------------------------
Confidence 00000 0000000000001010000
Q ss_pred hhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh------cCCe
Q 000047 1379 ICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF------KQYR 1452 (2693)
Q Consensus 1379 ICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~------rGik 1452 (2693)
+.... .......+...|.++...++++||||+.+..++.+...|.. .+..
T Consensus 261 ------l~~~~------------------~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 261 ------LIHTP------------------AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred ------ccccc------------------cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 00000 00001122233334444578999999999999999988875 2467
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-CCcccEEE
Q 000047 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-GQKRDVLV 1531 (2693)
Q Consensus 1453 ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-GQkKeV~V 1531 (2693)
+..+||+++.++|..+++.|+++... +||+|.++++|||+..+|+||+||+|.+...|+||+||++|- |......+
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~i 393 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRI 393 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEE
Confidence 88999999999999999999887654 799999999999999999999999999999999999999976 44455555
Q ss_pred EE
Q 000047 1532 LR 1533 (2693)
Q Consensus 1532 yR 1533 (2693)
+-
T Consensus 394 i~ 395 (876)
T PRK13767 394 IV 395 (876)
T ss_pred EE
Confidence 53
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=5e-21 Score=253.46 Aligned_cols=336 Identities=15% Similarity=0.133 Sum_probs=216.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA-PRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa-PsL 1166 (2693)
..|+++|.+++..++. +.+.|++..||+|||+.++..+...+.... ....|||+|+..| .|-..+|.++. .++
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 3699999999987765 889999999999999998776665554332 2358999998666 56777788775 357
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc----ccccCccEEEEccccccccc-cchHHHHHHhh-
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK----LSKIQWHYIIIDEGHRIKNA-SCKLNADLKHY- 1240 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~----L~kikWd~VIIDEAHRIKN~-sSKlsraLk~L- 1240 (2693)
++.+|.|......+. .+ ..+.+|+|||++++....-... ....+.++|||||||++.+. .+.+...+.++
T Consensus 110 ~v~~~~Gdt~~~~r~---~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 110 RPATYDGDTPTEERR---WA-REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEEeCCCCHHHHH---HH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 788888876543221 11 2357999999999864211100 01235689999999999762 33333333332
Q ss_pred --c-----ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1241 --Q-----SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1241 --k-----a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
. ....+++|||- ++..++.. . ++..++....
T Consensus 186 ri~~~~g~~~q~i~~SATi--~n~~~~~~---~--------------l~g~~~~~i~----------------------- 223 (742)
T TIGR03817 186 RLCARYGASPVFVLASATT--ADPAAAAS---R--------------LIGAPVVAVT----------------------- 223 (742)
T ss_pred HHHHhcCCCCEEEEEecCC--CCHHHHHH---H--------------HcCCCeEEEC-----------------------
Confidence 1 23568899995 22333221 1 1111110000
Q ss_pred HhhhhhhhhhHhHHhhcCccce-eEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKI-ERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~Ki-E~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
....|... ...+..+ . + +. + ..... .+
T Consensus 224 --------------~~~~~~~~~~~~~~~p-~-~----~~-~-------~~~~~---------------~~--------- 251 (742)
T TIGR03817 224 --------------EDGSPRGARTVALWEP-P-L----TE-L-------TGENG---------------AP--------- 251 (742)
T ss_pred --------------CCCCCcCceEEEEecC-C-c----cc-c-------ccccc---------------cc---------
Confidence 00001100 0111000 0 0 00 0 00000 00
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--------CCeEEEEeCCCCHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--------QYRYLRLDGHTSGGD 1464 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--------GikylRLDGSTS~eE 1464 (2693)
. .......+..+|..++. .+.++||||+.+..++.|..+|... +.++..++|++..++
T Consensus 252 ---------~-r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~e 317 (742)
T TIGR03817 252 ---------V-RRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPED 317 (742)
T ss_pred ---------c-ccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHH
Confidence 0 00001124445555543 4789999999999999999888653 567788999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHH
Q 000047 1465 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1465 RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkI 1544 (2693)
|.+++++|+++... +|++|+++++|||+...|+||+||.|-+...|+||+||++|.|+.. .++-++..+..|..+
T Consensus 318 R~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 318 RRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYL 392 (742)
T ss_pred HHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHH
Confidence 99999999887654 7999999999999999999999999999999999999999999654 344455556677665
Q ss_pred HH
Q 000047 1545 RA 1546 (2693)
Q Consensus 1545 le 1546 (2693)
+.
T Consensus 393 ~~ 394 (742)
T TIGR03817 393 VH 394 (742)
T ss_pred Hh
Confidence 44
No 50
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=4.4e-21 Score=260.75 Aligned_cols=359 Identities=18% Similarity=0.209 Sum_probs=210.4
Q ss_pred CCcchHHHHHHHHHHHHHhhc-CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNN-QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n-~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
+..||+||.++|..+...+.+ +.++||++.||+|||+++++++..++..... +.+|||||. .|+.||..+|..+...
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhcccc
Confidence 367999999999887765543 4678999999999999999999888765443 469999996 6779999999887432
Q ss_pred Cc-EE--EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-----CcccccCccEEEEccccccccc--------
Q 000047 1166 IH-KI--VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-----PKLSKIQWHYIIIDEGHRIKNA-------- 1229 (2693)
Q Consensus 1166 Lk-VI--vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-----~~L~kikWd~VIIDEAHRIKN~-------- 1229 (2693)
.. .+ +|.. .. + ..........|+|+||+.+.+.... ..+....|++||||||||....
T Consensus 490 ~~~~~~~i~~i-~~----L-~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 490 GDQTFASIYDI-KG----L-EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccchhhhhch-hh----h-hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 11 11 1111 10 1 1112234679999999999764321 1134467899999999996311
Q ss_pred ---------cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhH
Q 000047 1230 ---------SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300 (2693)
Q Consensus 1230 ---------sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Ls 1300 (2693)
.++..+.|..|. ..+|+|||||..++ ...|+.|+..+.
T Consensus 564 ~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----------------------~~~FG~pv~~Ys---------- 610 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----------------------TEIFGEPVYTYS---------- 610 (1123)
T ss_pred hccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----------------------hHHhCCeeEEee----------
Confidence 123334444444 58899999996432 122333221110
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhhHhHHhhcCccceeEeee---cccc-HHHHHHHHHHHHHhhccCCCCCcchhHHHHH
Q 000047 1301 EEENLLIINRLHQVL-RPFVLRRLKHKVENELPEKIERLVR---CEAS-AYQKLLMKRVEENLGSIGNSKGRSVHNSVME 1375 (2693)
Q Consensus 1301 eEe~lliI~RLhkVL-rPFLLRRtKkDVekeLP~KiE~vV~---ceLS-a~Qk~LYk~Lee~l~si~~sk~rslln~Lmq 1375 (2693)
+.+.+ ..+++.. ..|-..+..+. +... ..+...|+.....+.. ... ...+......
T Consensus 611 ----------l~eAI~DG~Lv~~-------~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~-~~l-~d~~~~~~~~ 671 (1123)
T PRK11448 611 ----------YREAVIDGYLIDH-------EPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDL-ATL-EDEVDFEVED 671 (1123)
T ss_pred ----------HHHHHhcCCcccC-------cCCEEEEEEeccccccccccchhhhcchhhhhhhh-ccC-cHHHhhhHHH
Confidence 00000 1111100 01111111100 0000 0001111111000000 000 0000000000
Q ss_pred HHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHH-HHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhc----
Q 000047 1376 LRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD-RLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFK---- 1449 (2693)
Q Consensus 1376 LRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLd-eLL~kLk-atGhKVLIFSQft~tLDILed~L~~r---- 1449 (2693)
+-+. ++ .....+.+. .++..+. ..+.|+||||....+++.|.+.|...
T Consensus 672 ~~~~-------------------------vi-~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 672 FNRR-------------------------VI-TESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred HHHH-------------------------Hh-hHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0000 00 000111111 2222221 12479999999999999888877542
Q ss_pred --CC---eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC
Q 000047 1450 --QY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1450 --Gi---kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG 1524 (2693)
++ .+..++|.++ ++.+++++|.++.. ..+|++++.+++|+|++.+++||++++.-+...|+|++||+.|+.
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~--p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERL--PNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCC--CeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3467999886 68899999976543 368999999999999999999999999999999999999999987
Q ss_pred C---cccEEEEEEE
Q 000047 1525 Q---KRDVLVLRFE 1535 (2693)
Q Consensus 1525 Q---kKeV~VyRLI 1535 (2693)
- |..+.||.++
T Consensus 802 ~~~~K~~f~I~D~v 815 (1123)
T PRK11448 802 PEIGKTHFRIFDAV 815 (1123)
T ss_pred ccCCCceEEEEehH
Confidence 5 5558888764
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=7.1e-21 Score=250.51 Aligned_cols=304 Identities=18% Similarity=0.234 Sum_probs=202.7
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
.+|.++|.+++..+..-... ..+.||..+||+|||++++..+...+.. ...+||++|+..| .|+.+.|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 47999999999988774432 2467999999999999988766555432 2358999998665 7799999999864
Q ss_pred --CcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1166 --IHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1166 --LkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
+++.+++|.... +...+ ..+..+..+|+|+|+..+... +...+..+|||||+|++.- .....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~-----v~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~ 407 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDD-----VEFHNLGLVIIDEQHRFGV---EQRLALREKG 407 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhccc-----chhcccceEEEechhhhhH---HHHHHHHhcC
Confidence 678888887543 33332 344556799999999888542 2223568999999999832 223333332
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.|+|||||+...+ .+..+ . +.. .
T Consensus 408 ~~~~iL~~SATp~prtl----~~~~~----------------g-------~~~-----------------------~--- 434 (681)
T PRK10917 408 ENPHVLVMTATPIPRTL----AMTAY----------------G-------DLD-----------------------V--- 434 (681)
T ss_pred CCCCEEEEeCCCCHHHH----HHHHc----------------C-------CCc-----------------------e---
Confidence 34678999999953211 10000 0 000 0
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
.+...+|.....+..
T Consensus 435 -----s~i~~~p~~r~~i~~------------------------------------------------------------ 449 (681)
T PRK10917 435 -----SVIDELPPGRKPITT------------------------------------------------------------ 449 (681)
T ss_pred -----EEEecCCCCCCCcEE------------------------------------------------------------
Confidence 000011110000000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHH
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~~r--GikylRLDGSTS~eERqeiId 1470 (2693)
.+....+...+.+.+.+....+++++|||...+ .+..+.+.|... ++++..+||.++.++|.++++
T Consensus 450 ----~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 525 (681)
T PRK10917 450 ----VVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMA 525 (681)
T ss_pred ----EEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHH
Confidence 000001112222333333466889999997542 234455555543 578999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccE
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV 1529 (2693)
+|.++..+ +||+|++.++|||++++++||+||.+. ....+.|+.||++|-|....|
T Consensus 526 ~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 526 AFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred HHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 99987765 899999999999999999999999985 568889999999999865444
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=6.4e-21 Score=255.46 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=208.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP 1164 (2693)
+.++.++|.+++..+..-...+ .+.||+.+||+|||.+++..+...+..+ ..+||+||+..| .|+...|.+++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4679999999999887644332 4679999999999999876655544432 358999998665 778889988875
Q ss_pred C--CcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 R--IHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 s--LkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
. +++.++.|... ++++++ ..+..+..+|||+|+..+.+. +.-.+..+|||||+|++. ......++.+
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~-----v~f~~L~llVIDEahrfg---v~~~~~L~~~ 596 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD-----VKFKDLGLLIIDEEQRFG---VKQKEKLKEL 596 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC-----CCcccCCEEEeecccccc---hhHHHHHHhc
Confidence 4 45555555432 333332 334556799999999766432 222356899999999973 2334455555
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....|+|||||+...+...+ ..+.++.++
T Consensus 597 ~~~~~vL~~SATpiprtl~~~l--~g~~d~s~I----------------------------------------------- 627 (926)
T TIGR00580 597 RTSVDVLTLSATPIPRTLHMSM--SGIRDLSII----------------------------------------------- 627 (926)
T ss_pred CCCCCEEEEecCCCHHHHHHHH--hcCCCcEEE-----------------------------------------------
Confidence 3 45789999999643322100 000000000
Q ss_pred hhhhHhHHhhcCccc---eeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1320 LRRLKHKVENELPEK---IERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1320 LRRtKkDVekeLP~K---iE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
...|.. +... .+...
T Consensus 628 ---------~~~p~~R~~V~t~-v~~~~---------------------------------------------------- 645 (926)
T TIGR00580 628 ---------ATPPEDRLPVRTF-VMEYD---------------------------------------------------- 645 (926)
T ss_pred ---------ecCCCCccceEEE-EEecC----------------------------------------------------
Confidence 000000 0000 00000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
...+...++.. ...+.+++|||+....++.+.+.|... ++++..+||.++.++|.+++++|.+
T Consensus 646 --------------~~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 646 --------------PELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred --------------HHHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 00000111122 234789999999999999999999874 7899999999999999999999998
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+..+ +||+|++.++|||++++++||++|.+. ....+.|+.||++|.|.. -++|-|+..
T Consensus 711 Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 8776 899999999999999999999999864 567889999999998864 444555543
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=4.2e-20 Score=251.96 Aligned_cols=303 Identities=17% Similarity=0.232 Sum_probs=202.7
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..+.+.|.+++.-++.-... ..+.|++.+||+|||.+++..+...+. ....+||+||+..| .|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 47889999999987764333 257899999999999988754443332 23458999999776 6788888876643
Q ss_pred --CcEEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1166 --IHKIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1166 --LkVIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
+++.++.|. ..++...+. .+..+..+|||+|++.+.+. +...++++|||||+|++.. +....++.+.
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~-----v~~~~L~lLVIDEahrfG~---~~~e~lk~l~ 746 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD-----VKWKDLGLLIVDEEHRFGV---RHKERIKAMR 746 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC-----CCHhhCCEEEEechhhcch---hHHHHHHhcC
Confidence 445445443 333333322 34456789999999877532 2234679999999999832 2334455543
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
....|+|||||+...+.... ..+.++.++
T Consensus 747 ~~~qvLl~SATpiprtl~l~~--~gl~d~~~I------------------------------------------------ 776 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAM--SGMRDLSII------------------------------------------------ 776 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHH--hhCCCcEEE------------------------------------------------
Confidence 45779999999654321100 000000000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
..|+.....+ .. ++..
T Consensus 777 ---------~~~p~~r~~v-------------------------------------~~-----~~~~------------- 792 (1147)
T PRK10689 777 ---------ATPPARRLAV-------------------------------------KT-----FVRE------------- 792 (1147)
T ss_pred ---------ecCCCCCCCc-------------------------------------eE-----EEEe-------------
Confidence 0000000000 00 0000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
+ ........++.++. .+++++|||+.+..++.+.+.|... ++++..+||.++.++|.+++.+|.++..+
T Consensus 793 ~--------~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~ 863 (1147)
T PRK10689 793 Y--------DSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 (1147)
T ss_pred c--------CcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC
Confidence 0 00001122233332 3678999999999999999999876 78999999999999999999999988776
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+||+|+++++|||++.+++||+.+.+ |....|.|+.||++|.|.+-.+
T Consensus 864 ---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 864 ---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred ---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEE
Confidence 89999999999999999999988775 6778899999999999865433
No 54
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.2e-20 Score=225.68 Aligned_cols=341 Identities=20% Similarity=0.305 Sum_probs=234.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP--s 1165 (2693)
..|||||.+.|..|.- -.+.+.||+...+|.|||++.+..++.. .+.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFG-NgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhC-CCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 5899999999998864 1112568999999999999988776643 455899999876 7999999999973 2
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--------CcccccCccEEEEccccccccccchHHHHH
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--------PKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--------~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
-.+..|.....++ ...+..|||+||.++.....+ ..|....|.+||+||.|-+-. .-..+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA--~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA--KMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH--HHHHHHH
Confidence 3344554443322 345778999999998542222 247778999999999999732 2233455
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR 1316 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr 1316 (2693)
.-..+..+|+||||-+..+ |=..-|||| .|+++.. +|.+.-.+
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~k-------------------------------- 487 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQKK-------------------------------- 487 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHhC--------------------------------
Confidence 5667888999999997643 333446665 3444321 11110000
Q ss_pred hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1317 PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1317 PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
..+-.-.--.++|+|+..-..-|-.... ..+.++
T Consensus 488 ------------GhIA~VqCaEVWCpMt~eFy~eYL~~~t--------~kr~lL-------------------------- 521 (776)
T KOG1123|consen 488 ------------GHIAKVQCAEVWCPMTPEFYREYLRENT--------RKRMLL-------------------------- 521 (776)
T ss_pred ------------CceeEEeeeeeecCCCHHHHHHHHhhhh--------hhhhee--------------------------
Confidence 0111222345899999764433322100 000000
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.+....||....-++......|.|+|||+...-.+ .+|-.+.|-.| |.|.|++.||.++++.|+- +
T Consensus 522 --------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfAL---k~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~-n 587 (776)
T KOG1123|consen 522 --------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFAL---KEYAIKLGKPF--IYGPTSQNERMKILQNFQT-N 587 (776)
T ss_pred --------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHH---HHHHHHcCCce--EECCCchhHHHHHHHhccc-C
Confidence 11123478777777777788999999999877654 44444445454 7799999999999999965 3
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcc----cEEEEEEEeCCCHHHH
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKR----DVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkK----eV~VyRLIT~gSIEEk 1543 (2693)
..+.-+.+| ++|...|||+.|+++|-..... +-.++.||.||+.|.-..+ .+..|.|+..+|.|-.
T Consensus 588 ~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 588 PKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 445555555 9999999999999999999987 5677899999999976433 3789999999998854
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.4e-19 Score=240.38 Aligned_cols=322 Identities=17% Similarity=0.108 Sum_probs=203.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sL 1166 (2693)
.+|+|+|.+++..+ +..+.|.|++.+||+|||+++...+...+. ..+.+|+|+|. +|+.++..+|.++.+ ++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 37999999999753 345789999999999999998765554443 23468999997 566888888887743 67
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh----
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---- 1240 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---- 1240 (2693)
++..+.|....... .....+|+|+|++.+............+.++|||||+|.+.+.. ..+...+..+
T Consensus 96 ~v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 96 RVGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred EEEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 88888886543321 12467999999998754322111112356999999999997532 2222223333
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.++||||.- +..++.. |+...... ...+|+-+
T Consensus 170 ~~~qii~lSATl~--n~~~la~------------------wl~~~~~~------------------------~~~rpv~l 205 (737)
T PRK02362 170 PDLQVVALSATIG--NADELAD------------------WLDAELVD------------------------SEWRPIDL 205 (737)
T ss_pred CCCcEEEEcccCC--CHHHHHH------------------HhCCCccc------------------------CCCCCCCC
Confidence 2346689999972 3444433 33211000 00011100
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
+ ..+.... .+ .. .. . +..+ ...
T Consensus 206 ~--------------~~v~~~~----------~~----~~-~~-~----------------~~~~------------~~~ 227 (737)
T PRK02362 206 R--------------EGVFYGG----------AI----HF-DD-S----------------QREV------------EVP 227 (737)
T ss_pred e--------------eeEecCC----------ee----cc-cc-c----------------cccC------------CCc
Confidence 0 0000000 00 00 00 0 0000 000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-------------------------------
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------- 1449 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------- 1449 (2693)
....++..+.+. ...++++||||..+..++.+...|...
T Consensus 228 ------~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 297 (737)
T PRK02362 228 ------SKDDTLNLVLDT----LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKD 297 (737)
T ss_pred ------cchHHHHHHHHH----HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHH
Confidence 000122222222 235789999999998877766666432
Q ss_pred -----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec-----CCCCccchhh
Q 000047 1450 -----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-----TDWNPQVDLQ 1515 (2693)
Q Consensus 1450 -----GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD-----ppWNP~~diQ 1515 (2693)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||++..++||. || .+.+...|.|
T Consensus 298 L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 298 LADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 13567889999999999999999887654 8999999999999999888876 77 5778899999
Q ss_pred hhhhhcccCCcccEEEEEEEeC
Q 000047 1516 AQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
++|||+|.|....-.++-++..
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecC
Confidence 9999999998765555555543
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=1.7e-19 Score=219.98 Aligned_cols=314 Identities=15% Similarity=0.157 Sum_probs=193.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCChHHH-----------H
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPPEER-----------R 1179 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~~eR-----------k 1179 (2693)
.++..+||+|||.+++.++...+... ....+++|+|. +++.++.+.+..++.. .+..+++..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 47889999999999998888766543 34568999997 5668899999888754 344444432210 0
Q ss_pred HHHHhhh----hcCCccEEEEcHHHHHhccCCC------cccccCccEEEEccccccccccc-hHHHHHHhhc--ccccc
Q 000047 1180 RLFKEKI----VHQKFNVLLTTYEYLMNKHDRP------KLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQ--SSHRL 1246 (2693)
Q Consensus 1180 ~l~ke~i----~~~kfdVVITTYE~Lik~~Dr~------~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lk--a~~RL 1246 (2693)
..+.... .....+|+|+|++.+....... .+..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 1110000 1124679999999987543321 12223447999999999975422 1333333333 34568
Q ss_pred cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 000047 1247 LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK 1326 (2693)
Q Consensus 1247 LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkD 1326 (2693)
++|||+- ..+ .+++... ...
T Consensus 160 ~~SATlp----~~l------------------~~~~~~~-~~~------------------------------------- 179 (358)
T TIGR01587 160 LMSATLP----KFL------------------KEYAEKI-GYV------------------------------------- 179 (358)
T ss_pred EEecCch----HHH------------------HHHHhcC-CCc-------------------------------------
Confidence 8999962 111 1111000 000
Q ss_pred HhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1327 VENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1327 VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
.....++. ... +..-.|++... ..
T Consensus 180 ~~~~~~~~---------~~~------------------------------~~~~~~~~~~~-----------------~~ 203 (358)
T TIGR01587 180 EFNEPLDL---------KEE------------------------------RRFERHRFIKI-----------------ES 203 (358)
T ss_pred ccccCCCC---------ccc------------------------------cccccccceee-----------------cc
Confidence 00000000 000 00001111100 00
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCC--eEEEEeCCCCHHHHHH----HHHHHhCCCCCce
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGA----LIDKFNQQDSPFF 1480 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGi--kylRLDGSTS~eERqe----iId~FN~~dSd~f 1480 (2693)
....|...+.+++..+ ..+.++||||+....++.+..+|...+. .+..+||.++..+|.+ +++.|.++...
T Consensus 204 ~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~-- 280 (358)
T TIGR01587 204 DKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF-- 280 (358)
T ss_pred ccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe--
Confidence 0113556666666443 4578999999999999999999988776 5899999999999976 48899765543
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc----cEEEEEEEeCC---CHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR----DVLVLRFETVQ---TVEEQVRASAEH 1550 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK----eV~VyRLIT~g---SIEEkIleraek 1550 (2693)
+||+|+++++|||+ .+++||+++.+ +..++||+||++|.|.+. .|+||.....+ -.+..++++-..
T Consensus 281 -ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~ 353 (358)
T TIGR01587 281 -VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQ 353 (358)
T ss_pred -EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHH
Confidence 79999999999999 58999998876 789999999999999764 35555554443 234444444433
No 57
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.9e-20 Score=215.63 Aligned_cols=317 Identities=15% Similarity=0.222 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--CCcEEE
Q 000047 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--RIHKIV 1170 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--sLkVIv 1170 (2693)
.|..++..++. +++.|.....|+|||.+.-.-++..+.......-.||+.|+..|.- ...-+..... ++.+..
T Consensus 53 IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ha 128 (400)
T KOG0328|consen 53 IQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHA 128 (400)
T ss_pred HHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEE
Confidence 38888877775 8899999999999998643222222222222234799999987754 4444444432 567777
Q ss_pred EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-cccccc
Q 000047 1171 YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSHRLL 1247 (2693)
Q Consensus 1171 y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a~~RLL 1247 (2693)
+.|.......+.+. ..+.+||.-|+.++.+...+..|.-....++|+|||+.|.|. ..+.+..++.+. ....++
T Consensus 129 cigg~n~gedikkl---d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~ 205 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKL---DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVL 205 (400)
T ss_pred EecCCccchhhhhh---cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEE
Confidence 88776644433222 357899999999998877777888888999999999999764 456677777665 556678
Q ss_pred ccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHH
Q 000047 1248 LTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKV 1327 (2693)
Q Consensus 1248 LTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDV 1327 (2693)
+|||- ..|+..+.++.
T Consensus 206 ~SATl----p~eilemt~kf------------------------------------------------------------ 221 (400)
T KOG0328|consen 206 VSATL----PHEILEMTEKF------------------------------------------------------------ 221 (400)
T ss_pred EeccC----cHHHHHHHHHh------------------------------------------------------------
Confidence 88885 22333222222
Q ss_pred hhcCccceeEeeecc-ccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1328 ENELPEKIERLVRCE-ASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1328 ekeLP~KiE~vV~ce-LSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
+++.+..+++-. ++.. -+.+ |......+
T Consensus 222 ---mtdpvrilvkrdeltlE----------------------------gIKq-----f~v~ve~E--------------- 250 (400)
T KOG0328|consen 222 ---MTDPVRILVKRDELTLE----------------------------GIKQ-----FFVAVEKE--------------- 250 (400)
T ss_pred ---cCCceeEEEecCCCchh----------------------------hhhh-----heeeechh---------------
Confidence 122222111110 0000 0000 00000011
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
.-|++.|+++...|- =...+|||+.+...|+|.+.|+..++.+..+||.+.++||.++++.|+.+.+. +||+|
T Consensus 251 --ewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitT 323 (400)
T KOG0328|consen 251 --EWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITT 323 (400)
T ss_pred --hhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEe
Confidence 128888888887664 34789999999999999999999999999999999999999999999999887 89999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
++-++|||+|..+.||+||+|-|+..|++||||.+|.|.+ -.+++|+..+.++
T Consensus 324 DVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 324 DVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred chhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 9999999999999999999999999999999999999964 3456777765554
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=3.7e-19 Score=234.34 Aligned_cols=313 Identities=19% Similarity=0.187 Sum_probs=196.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sL 1166 (2693)
.+|+++|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. +..++.+++.+|.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 469999999998753 47899999999999999987666555433 24589999974 55778888887643 46
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh---c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---Q 1241 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---k 1241 (2693)
++..+.|........ ....+|+|+|++.+............++++|||||+|.+.+.. ..+...+..+ .
T Consensus 94 ~v~~~~G~~~~~~~~------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDF------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChhh------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 666777754332111 2367999999997754322222223467899999999996532 2222222222 2
Q ss_pred -ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 -SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 -a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
..+.++||||.- +.. +|.+|++...... ..+|
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~------------------------~~r~--- 200 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS------------------------NFRP--- 200 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC------------------------CCCC---
Confidence 345689999972 233 3344443211000 0000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
.|-.. .++... .++ + ..+ .
T Consensus 201 ----------vpl~~-~i~~~~------~~~----------------------------~-~~~-------~-------- 219 (674)
T PRK01172 201 ----------VPLKL-GILYRK------RLI----------------------------L-DGY-------E-------- 219 (674)
T ss_pred ----------CCeEE-EEEecC------eee----------------------------e-ccc-------c--------
Confidence 01000 010000 000 0 000 0
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-------------------------CCeEEE
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-------------------------QYRYLR 1455 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-------------------------GikylR 1455 (2693)
+ .+. .+..++.+....++++|||+..+..++.+...|... ...+..
T Consensus 220 ------~--~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~ 290 (674)
T PRK01172 220 ------R--SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAF 290 (674)
T ss_pred ------c--ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEE
Confidence 0 000 022333444455788999999988877777666432 123567
Q ss_pred EeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC---------CCCccchhhhhhhhcccCCc
Q 000047 1456 LDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---------DWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1456 LDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp---------pWNP~~diQAIGRAHRIGQk 1526 (2693)
+||+++.++|..+.+.|+++... +|++|++++.|||+++ .+||++|. ++++..+.|++|||+|.|..
T Consensus 291 ~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 291 HHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 89999999999999999877554 7999999999999986 67888764 34667788999999999976
Q ss_pred ccEEEEEEE
Q 000047 1527 RDVLVLRFE 1535 (2693)
Q Consensus 1527 KeV~VyRLI 1535 (2693)
.....+-++
T Consensus 367 ~~g~~~i~~ 375 (674)
T PRK01172 367 QYGIGYIYA 375 (674)
T ss_pred CcceEEEEe
Confidence 653333333
No 59
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.7e-19 Score=214.26 Aligned_cols=332 Identities=17% Similarity=0.235 Sum_probs=219.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH----HHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL----PGWES 1157 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL----~QW~e 1157 (2693)
.+.....-|.|...|.-.+- +...+-|..||+|||...+..++.-+-.++.. ..+||+||+..| ++...
T Consensus 198 ~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 198 TLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred hcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHH
Confidence 34444566778887764443 45556778899999988776665544443332 358999999776 34556
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
.|..|+ ++.+.+..|.-..+. ++.......||||.|+++|+.++.. ..|......++|+|||+||.... ..+.
T Consensus 274 qlaqFt-~I~~~L~vGGL~lk~---QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademn 349 (691)
T KOG0338|consen 274 QLAQFT-DITVGLAVGGLDLKA---QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMN 349 (691)
T ss_pred HHHhhc-cceeeeeecCccHHH---HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHH
Confidence 667777 488888888776654 3445567899999999999987633 34556677899999999996432 2233
Q ss_pred HHHHhh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
..++.. +.+..+|+|||- ...+.||.++- +++|+...-+...+.
T Consensus 350 Eii~lcpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPvrifvd~~~~~----------------- 394 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPVRIFVDPNKDT----------------- 394 (691)
T ss_pred HHHHhccccccceeehhhh-HHHHHHHHHhh-----------------cCCCeEEEeCCcccc-----------------
Confidence 333222 122337777774 22333333211 111111110000000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
. ..|++-+ +
T Consensus 395 -------------------------------------------------------a----~~LtQEF----i-------- 403 (691)
T KOG0338|consen 395 -------------------------------------------------------A----PKLTQEF----I-------- 403 (691)
T ss_pred -------------------------------------------------------c----hhhhHHH----h--------
Confidence 0 0000000 0
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+-+. +-..+-.+|..++.++. ..+++||.+....+..|.-.|-..|+++..|||+.++++|-+.+++|+
T Consensus 404 -RIR~~-------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk 473 (691)
T KOG0338|consen 404 -RIRPK-------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK 473 (691)
T ss_pred -eeccc-------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH
Confidence 00000 00012233444444443 468999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
+...+ |||+|+++++|||+..+-+||+|++|-....|++|+||+.|.|. .-+-..|+.++ |.+|+.-
T Consensus 474 ~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR--aGrsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 474 KEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR--AGRSVTLVGES--DRKLLKE 540 (691)
T ss_pred hccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc--CcceEEEeccc--cHHHHHH
Confidence 88877 89999999999999999999999999999999999999999984 34445566655 5555543
No 60
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.3e-20 Score=223.26 Aligned_cols=374 Identities=16% Similarity=0.197 Sum_probs=226.4
Q ss_pred CcchHHHHHHHHHHHHHhhc-----CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCchH-HHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN-----QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSVL-PGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n-----~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSLL-~QW~eEfeK 1161 (2693)
..++|-|...+.|++.-.+. .+..+++..||+|||+.....|..++..+.. +-.+|||+|...| .|..++|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 37899999999999876552 3345788999999999988888877766533 2357999998765 678999999
Q ss_pred HCCC--CcEEEEcCChHHHHHHHH--hhhhcCCccEEEEcHHHHHhccC-CCcccccCccEEEEccccccccccchH--H
Q 000047 1162 WAPR--IHKIVYCGPPEERRRLFK--EKIVHQKFNVLLTTYEYLMNKHD-RPKLSKIQWHYIIIDEGHRIKNASCKL--N 1234 (2693)
Q Consensus 1162 waPs--LkVIvy~Gs~~eRk~l~k--e~i~~~kfdVVITTYE~Lik~~D-r~~L~kikWd~VIIDEAHRIKN~sSKl--s 1234 (2693)
|++. +.|....|...-+.+..+ ........||+|+|+++|+.++. ...|..-+..|+|||||+||.+...+- .
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLD 317 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHH
Confidence 9974 556666676554443322 22223467999999999998775 345666678999999999997644332 2
Q ss_pred HHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1235 raLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
..+..+....++.+. ..|+.+..-.-|..|.... .-|.++ ...|.++
T Consensus 318 ~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~~---t~~~~~----------------------~~~l~kL 364 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSELL---TKLGKL----------------------YPPLWKL 364 (620)
T ss_pred HHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHHH---hhcCCc----------------------CchhHhh
Confidence 232222222222221 1111111101111000000 000000 0001111
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
+. .....+.|.|. ..| -.+||-++......+.
T Consensus 365 ~~--------satLsqdP~Kl--------------------------------------~~l--~l~~Prl~~v~~~~~~ 396 (620)
T KOG0350|consen 365 VF--------SATLSQDPSKL--------------------------------------KDL--TLHIPRLFHVSKPLIG 396 (620)
T ss_pred hc--------chhhhcChHHH--------------------------------------hhh--hcCCCceEEeecccce
Confidence 11 01111112111 000 0223322211100000
Q ss_pred c-cCCCCCCChhhhcc--cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHH
Q 000047 1395 T-LIPKHYLPPIVRLC--GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGA 1467 (2693)
Q Consensus 1395 ~-li~~~~l~~Lvr~S--gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqe 1467 (2693)
. -++.......+-.. -|-..+..+|.. ....++|+|+........|...|. ...+++-.++|+.+.+.|.+
T Consensus 397 ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k 474 (620)
T KOG0350|consen 397 RYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYK 474 (620)
T ss_pred eeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHH
Confidence 0 00000000011111 134455556654 346799999999887776666664 45677778999999999999
Q ss_pred HHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1468 LIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1468 iId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
++.+|+.++.. +||+++++.+|||+.+.+.||+||+|-.-..|++|+||+.|.||.- ++|.|+.. -|++.+..
T Consensus 475 ~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~--~~~r~F~k 547 (620)
T KOG0350|consen 475 MLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK--HEKRLFSK 547 (620)
T ss_pred HHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc--ccchHHHH
Confidence 99999988876 7999999999999999999999999999999999999999999864 44555443 34555555
Q ss_pred HHHHH
Q 000047 1548 AEHKL 1552 (2693)
Q Consensus 1548 aekKl 1552 (2693)
...|.
T Consensus 548 lL~~~ 552 (620)
T KOG0350|consen 548 LLKKT 552 (620)
T ss_pred HHHHh
Confidence 54443
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.82 E-value=1.7e-18 Score=229.64 Aligned_cols=321 Identities=19% Similarity=0.153 Sum_probs=197.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHH-HHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALI-CYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALI-a~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-s 1165 (2693)
.+|+|+|.+++.- .+..+.+.|++..||+|||+++...+ ..++. ..+.+|+|+|.. ++.++..+|.+|.. +
T Consensus 22 ~~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 4799999999973 23357899999999999999995444 34432 234589999975 55778888887753 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a 1242 (2693)
+++..+.|....... .....+|+|+|++.+............++++|||||+|.+... ...+...+.++. .
T Consensus 96 ~~v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~ 169 (720)
T PRK00254 96 LRVAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR 169 (720)
T ss_pred CEEEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcC
Confidence 777788886543221 1246899999999875433221122245789999999999643 334444455543 3
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++||||.- +..++- +|+....... ..+|.-++
T Consensus 170 ~qiI~lSATl~--n~~~la------------------~wl~~~~~~~------------------------~~rpv~l~- 204 (720)
T PRK00254 170 AQILGLSATVG--NAEELA------------------EWLNAELVVS------------------------DWRPVKLR- 204 (720)
T ss_pred CcEEEEEccCC--CHHHHH------------------HHhCCccccC------------------------CCCCCcce-
Confidence 56689999972 244433 3332211000 00110000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
. .++ ... .++ ..... ..
T Consensus 205 ------------~-~~~-~~~-----~~~---------~~~~~---------------------------~~-------- 221 (720)
T PRK00254 205 ------------K-GVF-YQG-----FLF---------WEDGK---------------------------IE-------- 221 (720)
T ss_pred ------------e-eEe-cCC-----eee---------ccCcc---------------------------hh--------
Confidence 0 000 000 000 00000 00
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh---------------------------------c
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---------------------------------K 1449 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~---------------------------------r 1449 (2693)
+. ...+..++.++...+.++||||..+..+..+...|.. .
T Consensus 222 ----~~---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 222 ----RF---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred ----cc---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 00 0001112222233577899999888766554433311 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-------ecCCCC-ccchhhhhhhhc
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWN-PQVDLQAQARAH 1521 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-------yDppWN-P~~diQAIGRAH 1521 (2693)
...+..+||+++.++|..+.+.|+++... +|++|++++.|+|+++.+.||. |+.++- ...+.|++|||+
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 23578899999999999999999887654 8999999999999998888874 333332 347899999999
Q ss_pred ccCCcccEEEEEEEeCCC
Q 000047 1522 RIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1522 RIGQkKeV~VyRLIT~gS 1539 (2693)
|.|....-.++-++..+.
T Consensus 372 R~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 372 RPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CCCcCCCceEEEEecCcc
Confidence 998776656665555443
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=6.6e-19 Score=224.24 Aligned_cols=309 Identities=20% Similarity=0.228 Sum_probs=226.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+|+-|.++|+.+++ +.+.|....||.||++++-... ++ ..|..|||.|. +|+.+..+.+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 5788899999998887 7899999999999998663322 22 25689999996 77888888887665 44
Q ss_pred EEEEcC--ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc-------chHHHHHH
Q 000047 1168 KIVYCG--PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS-------CKLNADLK 1238 (2693)
Q Consensus 1168 VIvy~G--s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s-------SKlsraLk 1238 (2693)
...... +..++..++ ..+..+.++++..+++.+........|...+..+++|||||.+-.++ ..+.....
T Consensus 84 A~~lnS~l~~~e~~~v~-~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 84 AAYLNSTLSREERQQVL-NQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eehhhcccCHHHHHHHH-HHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 333333 345555543 44566789999999999988766677888899999999999986653 23333344
Q ss_pred hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhh
Q 000047 1239 HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPF 1318 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPF 1318 (2693)
.|....+++||||--.--..|+...|.+-.+.+|.. .|.+|-
T Consensus 163 ~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN-------------------------------- 204 (590)
T COG0514 163 GLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN-------------------------------- 204 (590)
T ss_pred hCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch--------------------------------
Confidence 555567899999986666667666665544432211 111100
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
+|-.+.. .
T Consensus 205 -------------------------------i~~~v~~----------------------~------------------- 212 (590)
T COG0514 205 -------------------------------LALKVVE----------------------K------------------- 212 (590)
T ss_pred -------------------------------hhhhhhh----------------------c-------------------
Confidence 0000000 0
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
...-.++.+|.. .....+...||||..+..++.|..+|...|++...+||++..++|+.+-++|..++..
T Consensus 213 -------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 213 -------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred -------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 000001111111 1233455689999999999999999999999999999999999999999999988776
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
++|+|.|.|.|||-++..+||+||+|-+...|.|-+|||+|-|...++.+++
T Consensus 283 ---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 283 ---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred ---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 8999999999999999999999999999999999999999999887765543
No 63
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=7.4e-19 Score=217.76 Aligned_cols=325 Identities=18% Similarity=0.283 Sum_probs=216.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-HHHHhcCC---------CCCEEEEecCch-HHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-YLMETKND---------RGPFLVVVPSSV-LPGWE 1156 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-~Lle~k~~---------~gP~LIVVPtSL-L~QW~ 1156 (2693)
+..+-|+|+.++.-+.. +++.+.+..||+|||...+..+. ++++.+.. ....||++|+.. +.|-.
T Consensus 94 ~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 35677899999986664 78888999999999999886544 55544321 123799999855 57889
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls 1234 (2693)
+|.+++.. .++.++.+|....+... ......+||+++|...|....++..+......|+|||||++|....
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m---- 242 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM---- 242 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc----
Confidence 99999874 45555555554444322 2335789999999999998888888888888899999999985421
Q ss_pred HHHHhhccc--ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSS--HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1235 raLk~Lka~--~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.|-.. +.+.-+++|..++..-+ -|...|. ..+.
T Consensus 243 ----gF~p~Ir~iv~~~~~~~~~~~qt~----------------mFSAtfp-------------------------~~iq 277 (482)
T KOG0335|consen 243 ----GFEPQIRKIVEQLGMPPKNNRQTL----------------LFSATFP-------------------------KEIQ 277 (482)
T ss_pred ----cccccHHHHhcccCCCCccceeEE----------------EEeccCC-------------------------hhhh
Confidence 01111 11111222211111000 0000000 0011
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
.+...|+ .+- ...+. +...+... .+. .+ .++
T Consensus 278 ~l~~~fl---------~~~----yi~la-----------------V~rvg~~~----~ni----~q--~i~--------- 308 (482)
T KOG0335|consen 278 RLAADFL---------KDN----YIFLA-----------------VGRVGSTS----ENI----TQ--KIL--------- 308 (482)
T ss_pred hhHHHHh---------hcc----ceEEE-----------------Eeeecccc----ccc----ee--Eee---------
Confidence 1111111 000 00000 00000000 000 00 000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcC-------CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT-------DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkat-------GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
.+....|...|.++|.+.... .++++||++..+.++.|..+|...++++..|||..++.+|
T Consensus 309 ------------~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 309 ------------FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ------------eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 122234666677777654421 2599999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+.++.|+.+..+ +||+|.++.+|||+..+++||+||+|-+...|++||||++|.|+.--.+.|
T Consensus 377 ~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 377 EQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred HHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999998887 899999999999999999999999999999999999999999988665544
No 64
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=7.1e-18 Score=206.45 Aligned_cols=335 Identities=19% Similarity=0.297 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCCE-EEEecCchH-HHHHHHHHHHCC
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGPF-LVVVPSSVL-PGWESEINFWAP 1164 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP~-LIVVPtSLL-~QW~eEfeKwaP 1164 (2693)
--.|.++|.-++. ++..++-..||+|||+.++..|...+... +..|++ |||||+..| .|-.+-+.+...
T Consensus 161 TsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~ 236 (708)
T KOG0348|consen 161 TSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLK 236 (708)
T ss_pred chHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhc
Confidence 3458888887776 78889999999999999998887766442 223454 999999766 555666666654
Q ss_pred CCcEEE---EcCC-hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc--hHHHHH
Q 000047 1165 RIHKIV---YCGP-PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC--KLNADL 1237 (2693)
Q Consensus 1165 sLkVIv---y~Gs-~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS--KlsraL 1237 (2693)
...+++ ..|. .....+. -...+.+|+|.|+++|..++.. ..+..-+..+||+|||+||..-+. -+.+.|
T Consensus 237 ~~hWIVPg~lmGGEkkKSEKA----RLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 237 PFHWIVPGVLMGGEKKKSEKA----RLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred CceEEeeceeecccccccHHH----HHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 444443 2232 2211111 1235889999999999876532 223334467799999999854321 111111
Q ss_pred Hhhcc--------------cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHH
Q 000047 1238 KHYQS--------------SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEE 1303 (2693)
Q Consensus 1238 k~Lka--------------~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe 1303 (2693)
..+.. ...+|||||-
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATL--------------------------------------------------- 341 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATL--------------------------------------------------- 341 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhh---------------------------------------------------
Confidence 11100 0011111111
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCc
Q 000047 1304 NLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHP 1383 (2693)
Q Consensus 1304 ~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHP 1383 (2693)
..-+.+|..+ --+....|..+-+..|. +.....+...|.-|
T Consensus 342 -td~V~rLa~~-----------------sLkDpv~I~ld~s~~~~---------------------~p~~~a~~ev~~~~ 382 (708)
T KOG0348|consen 342 -TDGVNRLADL-----------------SLKDPVYISLDKSHSQL---------------------NPKDKAVQEVDDGP 382 (708)
T ss_pred -HHHHHHHhhc-----------------cccCceeeeccchhhhc---------------------CcchhhhhhcCCcc
Confidence 0000111110 00000011111000000 00001111112211
Q ss_pred cccchhhhhhhccCCCCCCChhhhcccHHH--HHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhh-----------
Q 000047 1384 YLSQLHAEEVDTLIPKHYLPPIVRLCGKLE--MLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTF----------- 1448 (2693)
Q Consensus 1384 yL~~~~~EEid~li~~~~l~~Lvr~SgKLe--lLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~----------- 1448 (2693)
+-... ....++......++....|+. .|.-+|.... ....|+|||....++++.=.+.|..
T Consensus 383 ~~~~l----~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 383 AGDKL----DSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred ccccc----ccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 11100 001122222233333444543 4445554432 2346899999888877765555421
Q ss_pred -----------cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhh
Q 000047 1449 -----------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQ 1517 (2693)
Q Consensus 1449 -----------rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAI 1517 (2693)
.+.++.+|||+|.+++|..++..|..... .+|++|+++++||||+.++.||-||+|..+..|++|+
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRv 535 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRV 535 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHh
Confidence 34579999999999999999999965443 4899999999999999999999999999999999999
Q ss_pred hhhcccCCcccEEE
Q 000047 1518 ARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1518 GRAHRIGQkKeV~V 1531 (2693)
||+-|+|-+-.-..
T Consensus 536 GRTARaG~kG~alL 549 (708)
T KOG0348|consen 536 GRTARAGEKGEALL 549 (708)
T ss_pred hhhhhccCCCceEE
Confidence 99999998766433
No 65
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=3.9e-18 Score=201.94 Aligned_cols=323 Identities=18% Similarity=0.238 Sum_probs=217.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa--PsL 1166 (2693)
+.-|.|..+|..++. +.+||-+.-+|+|||......+..-+...+...-.||+.|+..+ .|-.+.|.... -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 445679999998887 99999999999999987655555444444444446999999776 55555564332 357
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC----CcccccCccEEEEccccccccccchHHHHHHh---
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR----PKLSKIQWHYIIIDEGHRIKNASCKLNADLKH--- 1239 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr----~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~--- 1239 (2693)
++.+++|....- .+......+.||||+|++.+...... ..+...+..|+|+|||+++.+.. +...|..
T Consensus 105 K~~vivGG~d~i---~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~d~L~~i~e 179 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FPDILEGIEE 179 (442)
T ss_pred eEEEEEccHHHh---hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hhhHHhhhhc
Confidence 777777775543 34445567899999999998654422 12334456899999999986542 1122221
Q ss_pred -hcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1240 -YQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1240 -Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
+.. +..+++|||= .+++.+ .|..|+...
T Consensus 180 ~lP~~RQtLlfSATi-td~i~q---------------------l~~~~i~k~---------------------------- 209 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATI-TDTIKQ---------------------LFGCPITKS---------------------------- 209 (442)
T ss_pred cCCCccceEEEEeeh-hhHHHH---------------------hhcCCcccc----------------------------
Confidence 111 2335555553 111111 111111000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
.-+.+.. .. +. .....|.+ -|
T Consensus 210 -----------------~a~~~e~-------------------~~---~v---stvetL~q----~y------------- 230 (442)
T KOG0340|consen 210 -----------------IAFELEV-------------------ID---GV---STVETLYQ----GY------------- 230 (442)
T ss_pred -----------------cceEEec-------------------cC---CC---Cchhhhhh----he-------------
Confidence 0000000 00 00 00000000 00
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
-++...+|-.+|..+|..+.. ....++||.+.+..+++|...|+..+++...||+-+++.+|-..+.+|+.+.
T Consensus 231 ------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~ 304 (442)
T KOG0340|consen 231 ------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA 304 (442)
T ss_pred ------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC
Confidence 122334678889999998876 5778999999999999999999999999999999999999999999998877
Q ss_pred CCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1477 SPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1477 Sd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
.. +||+|+++++|||++..+.||+||.|-.|..|++|.||..|.|..-. -+.+++...+|
T Consensus 305 ~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~--aiSivt~rDv~ 364 (442)
T KOG0340|consen 305 AR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM--AISIVTQRDVE 364 (442)
T ss_pred cc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc--eEEEechhhHH
Confidence 66 89999999999999999999999999999999999999988886544 33445554444
No 66
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=2.4e-18 Score=208.94 Aligned_cols=308 Identities=19% Similarity=0.322 Sum_probs=209.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHH-HHHHh---cCCCCCE-EEEecCchH-HHHHHHHHHHCC--CCcEEEEcCChHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALIC-YLMET---KNDRGPF-LVVVPSSVL-PGWESEINFWAP--RIHKIVYCGPPEERRR 1180 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa-~Lle~---k~~~gP~-LIVVPtSLL-~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~ 1180 (2693)
+...|-..-+|+|||...+--+. +.+.+ ....+|+ ||+||+..+ .|...|.++|+. +++++..+|......+
T Consensus 260 grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 260 GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQ 339 (731)
T ss_pred cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHH
Confidence 44556556799999976654332 33322 3356776 778898555 778889999853 6777766665544332
Q ss_pred HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcccc-cccccccCCCCCH
Q 000047 1181 LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSSH-RLLLTGTPLQNNL 1257 (2693)
Q Consensus 1181 l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~~-RLLLTGTPLQNnL 1257 (2693)
.. .+ ..+..+||+|+++|+...........+..|+|||||.||-.... +...+..+++..+ .|++++|-
T Consensus 340 ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf----- 411 (731)
T KOG0339|consen 340 SK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF----- 411 (731)
T ss_pred HH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc-----
Confidence 21 12 26889999999999876655556667789999999999966442 2222223343333 25555542
Q ss_pred HHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeE
Q 000047 1258 EELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIER 1337 (2693)
Q Consensus 1258 eELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~ 1337 (2693)
.. ++.++.+-|+ . +.+..
T Consensus 412 ---------------------~~-----------------------------kIe~lard~L---------~---dpVrv 429 (731)
T KOG0339|consen 412 ---------------------KK-----------------------------KIEKLARDIL---------S---DPVRV 429 (731)
T ss_pred ---------------------hH-----------------------------HHHHHHHHHh---------c---CCeeE
Confidence 00 0111111111 1 11111
Q ss_pred eeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHH
Q 000047 1338 LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDR 1417 (2693)
Q Consensus 1338 vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLde 1417 (2693)
+ ..+. +. .+..+.+.-.+|- ....|+.+|.+
T Consensus 430 V-qg~v------------------ge-----an~dITQ~V~V~~-------------------------s~~~Kl~wl~~ 460 (731)
T KOG0339|consen 430 V-QGEV------------------GE-----ANEDITQTVSVCP-------------------------SEEKKLNWLLR 460 (731)
T ss_pred E-Eeeh------------------hc-----cccchhheeeecc-------------------------CcHHHHHHHHH
Confidence 1 0000 00 0011111111111 11238899998
Q ss_pred HHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc
Q 000047 1418 LLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA 1497 (2693)
Q Consensus 1418 LL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa 1497 (2693)
.|.++... .+||||..-....+.|...|..+||++..|||.+.+.+|.+.|.+|+....+ +|+.|+++.+||++..
T Consensus 461 ~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 461 HLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATDVAARGLDIPS 536 (731)
T ss_pred HhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEeeHhhcCCCccc
Confidence 88887654 4999999999999999999999999999999999999999999999888777 8999999999999999
Q ss_pred cCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1498 ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1498 ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+||+||..-....+.|||||.+|.|-+ -..|.|||....+
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 99999999999999999999999999976 5678888865544
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.79 E-value=4.4e-18 Score=223.85 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=87.6
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-----HHHHHHhC----CC----CCceEEEeeecccc
Q 000047 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-----ALIDKFNQ----QD----SPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1424 atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq-----eiId~FN~----~d----Sd~fVfLLSTrAGG 1490 (2693)
..+.++||||+.+..++.|.+.|...++ ..|||.+++.+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4568999999999999999999998887 8999999999999 78999975 22 01135799999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCccc--EEEE
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD--VLVL 1532 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe--V~Vy 1532 (2693)
+|||+.. ++||+++.++ ..|+||+||++|.|.... ++|+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEE
Confidence 9999975 9999988775 799999999999998644 4444
No 68
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=210.67 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecCchHH-HH---HHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPSSVLP-GW---ESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPtSLL~-QW---~eEfeK 1161 (2693)
++-+-|...+.-++. +.+.+.+.-||+|||+..+..+..++..... .--+|||||+..|. |- ..++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 566777777766654 6688999999999999887766655543221 12369999998874 43 344556
Q ss_pred HCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc-ccccCccEEEEccccccccccc--hHHHHHH
Q 000047 1162 WAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK-LSKIQWHYIIIDEGHRIKNASC--KLNADLK 1238 (2693)
Q Consensus 1162 waPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~-L~kikWd~VIIDEAHRIKN~sS--KlsraLk 1238 (2693)
+.+...+.+..|....+... ..+. ...+++|+|+++|..++++.. +.-..-+++|||||+|+..... -+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhh-ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 67777777777765544322 2233 389999999999988765432 2222237999999999854332 1112222
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. +..+|.|||-
T Consensus 257 ~lpk~rqt~LFSAT~----------------------------------------------------------------- 271 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ----------------------------------------------------------------- 271 (543)
T ss_pred hccccceeeEeeCCC-----------------------------------------------------------------
Confidence 2211 1123334432
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccc--hhhhhhhc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQ--LHAEEVDT 1395 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~--~~~EEid~ 1395 (2693)
+..-+.+.+-. |.. .|-|+.- ....+..+
T Consensus 272 --------------------------~~kV~~l~~~~---------------------L~~--d~~~v~~~d~~~~~The 302 (543)
T KOG0342|consen 272 --------------------------PSKVKDLARGA---------------------LKR--DPVFVNVDDGGERETHE 302 (543)
T ss_pred --------------------------cHHHHHHHHHh---------------------hcC--CceEeecCCCCCcchhh
Confidence 11111111100 000 0001000 00000000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
-+... ..+.....+|-+|..+|.+.... .||||||..-.+..++.+.|.+..+++..|||..++..|..+..+|.+.
T Consensus 303 ~l~Qg--yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka 379 (543)
T KOG0342|consen 303 RLEQG--YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA 379 (543)
T ss_pred cccce--EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc
Confidence 00000 01122234577888888876543 8999999999999999999999999999999999999999999999887
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
++. ||++|+++.+|+|++++|.||-||+|-+|..|++|+||+.|-|-+-+
T Consensus 380 esg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 380 ESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred ccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 776 89999999999999999999999999999999999999999775533
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=1.9e-17 Score=216.24 Aligned_cols=395 Identities=15% Similarity=0.152 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--sL 1166 (2693)
.|+|||.+.+..+.- +.|+|+...||.|||++++..++.... . ...++||+|+.-| .+|.+++..++- ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL--~-g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNAL--T-GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhh--c-CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 468888887766653 456799999999999998766432222 1 2348999998765 566666654432 45
Q ss_pred cEEEEcCC-hHH-HHHHHHhhhhcCCccEEEEcHHHHHhcc-------CCCcccccCccEEEEccccccccccchHHHHH
Q 000047 1167 HKIVYCGP-PEE-RRRLFKEKIVHQKFNVLLTTYEYLMNKH-------DRPKLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1167 kVIvy~Gs-~~e-Rk~l~ke~i~~~kfdVVITTYE~Lik~~-------Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
.+.+..+. ... ...... ......+|+++|...|..+. ....+....+.++||||||.|.-..
T Consensus 141 sv~~~~~~s~~~~~~~~~r--r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe------- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEK--RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS------- 211 (762)
T ss_pred cEEEEECCCCccccCHHHH--HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc-------
Confidence 55544332 111 100001 11246899999999883211 1112233467899999999984322
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCC------------------hhHHHHHhcCcccCCCCCCchhhhh
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS------------------SEDFSQWFNKPFESNGDNSPDEALL 1299 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S------------------~k~F~e~F~kP~e~~g~~s~~e~~L 1299 (2693)
++..|++||.|-.. ..+|..++-+...+-.. ...-.+.|..+ . +
T Consensus 212 ----artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~----------l 273 (762)
T TIGR03714 212 ----AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N----------L 273 (762)
T ss_pred ----CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c----------c
Confidence 44568899977533 45776664332221111 00111111110 0 0
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhhhhHhHHhhcCccceeEeeec------cccHHHHHHHHHHHHH--hh-----------
Q 000047 1300 SEEENLLIINRLHQVLRP-FVLRRLKHKVENELPEKIERLVRC------EASAYQKLLMKRVEEN--LG----------- 1359 (2693)
Q Consensus 1300 seEe~lliI~RLhkVLrP-FLLRRtKkDVekeLP~KiE~vV~c------eLSa~Qk~LYk~Lee~--l~----------- 1359 (2693)
...++......+...|+- +++.|-+.-+- -+....+|.- +-..|+.-|...++.. +.
T Consensus 274 ~~~~~~~~~~~i~~al~A~~~~~~d~dYiV---~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~I 350 (762)
T TIGR03714 274 YSEEYFELVRHINLALRAHYLFKRNKDYVV---TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASI 350 (762)
T ss_pred CChhhHHHHHHHHHHHHHHHHHhcCCceEE---ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeee
Confidence 001111122233333332 22222111110 1111111110 0112333333333211 00
Q ss_pred ----------ccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC-hhhhcccHHHHHHHHHHHhhcCCCe
Q 000047 1360 ----------SIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP-PIVRLCGKLEMLDRLLPKLKATDHR 1428 (2693)
Q Consensus 1360 ----------si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~-~Lvr~SgKLelLdeLL~kLkatGhK 1428 (2693)
.+..-.+. ....-.++.++.+-..+.-+...... .....+ -......|+.++.+.+.++...+.+
T Consensus 351 t~qn~Fr~Y~kl~GmTGT-a~~~~~Ef~~iY~l~v~~IPt~kp~~---r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~p 426 (762)
T TIGR03714 351 TYQNLFKMFNKLSGMTGT-GKVAEKEFIETYSLSVVKIPTNKPII---RIDYPDKIYATLPEKLMATLEDVKEYHETGQP 426 (762)
T ss_pred eHHHHHhhCchhcccCCC-ChhHHHHHHHHhCCCEEEcCCCCCee---eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCC
Confidence 00000000 11112233344333222110000000 000000 1123446999999999888888999
Q ss_pred EEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcc---------ccC
Q 000047 1429 VLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQ---------AAD 1499 (2693)
Q Consensus 1429 VLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQ---------aAD 1499 (2693)
|||||......+.|...|...|+++..|+|.+...+|..+...|+.+ -++|+|+.+|+|+|+. ..+
T Consensus 427 vLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 427 VLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred EEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEccccccccCCCCCccccccCCeE
Confidence 99999999999999999999999999999999988877666666433 2799999999999999 889
Q ss_pred EEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1500 TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1500 tVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||.||++-+... .|+.||++|.|..-.+..
T Consensus 502 vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 502 VIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred EEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 9999999987655 999999999997655433
No 70
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=1.9e-17 Score=201.17 Aligned_cols=318 Identities=19% Similarity=0.274 Sum_probs=216.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC-C----CEEEEecCchHHH----HHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR-G----PFLVVVPSSVLPG----WESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~-g----P~LIVVPtSLL~Q----W~eEf 1159 (2693)
...-|-|...+..++. +...++-..||+|||+..+..+...+...... . -.|||.|+..|.- ....|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 4677889999987775 77888889999999999888887766332221 1 2599999977744 34445
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--CcccccCccEEEEccccccccccc--hHHH
Q 000047 1160 NFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSKIQWHYIIIDEGHRIKNASC--KLNA 1235 (2693)
Q Consensus 1160 eKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~kikWd~VIIDEAHRIKN~sS--Klsr 1235 (2693)
..+++++.+..+.|.......+. .+...+.+|+|.|+++|.....+ ..+.-....++|+|||+|+...+. .+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 56678999999999866554432 34456889999999999754432 234444678999999999976553 3334
Q ss_pred HHHhhcccccc-cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DLKHYQSSHRL-LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aLk~Lka~~RL-LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.|..+...+|- |.|||=.+ ..++ +...
T Consensus 181 ILs~LPKQRRTGLFSATq~~-~v~d----------------------------------------------L~ra----- 208 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQ-EVED----------------------------------------------LARA----- 208 (567)
T ss_pred HHHhcccccccccccchhhH-HHHH----------------------------------------------HHHh-----
Confidence 44455544443 33444300 0000 0000
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
-|| ..+...+... ... ..|.-
T Consensus 209 ----GLR-----------Npv~V~V~~k-----------------------~~~------------~tPS~--------- 229 (567)
T KOG0345|consen 209 ----GLR-----------NPVRVSVKEK-----------------------SKS------------ATPSS--------- 229 (567)
T ss_pred ----hcc-----------Cceeeeeccc-----------------------ccc------------cCchh---------
Confidence 001 0000000000 000 00000
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~F 1472 (2693)
.......+...-|+..|.++|.. ...+|+|||...-...++....|.. ..+.++.|||.++...|..++..|
T Consensus 230 ----L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 230 ----LALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred ----hcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence 00001123344589999999986 4578999999888888887777753 578899999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+.... +|++|+++++|||++++|+||.||||-+|..+.||.||+.|.|..-.-.||
T Consensus 304 ~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 304 RKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred HhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 874444 899999999999999999999999999999999999999999977554444
No 71
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.77 E-value=9.7e-18 Score=205.57 Aligned_cols=333 Identities=20% Similarity=0.237 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC--C-CCCEEEEecCchH-HHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN--D-RGPFLVVVPSSVL-PGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~--~-~gP~LIVVPtSLL-~QW~eEfeKwa 1163 (2693)
..+.+.|.+.|...+. +...|-|.-||+|||+..+..+.. |+..+- . .--+|||.|+..| .|..+-+.+..
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 3577789999887775 778889999999999887765543 332221 1 1127999999776 55555555443
Q ss_pred --CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccch--HHHHHH
Q 000047 1164 --PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASCK--LNADLK 1238 (2693)
Q Consensus 1164 --PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sSK--lsraLk 1238 (2693)
..+..-++.|..+... +.......+|+|||+++|..+.|.. .|.-....++|+|||+||.....+ +...+.
T Consensus 166 k~h~fSaGLiiGG~~~k~----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKF----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHH----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 2344455566554332 2233468899999999999877643 466667899999999999775533 333444
Q ss_pred hhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+.. +..||+|||+- ++..||.-|
T Consensus 242 ~lP~~RQTLLFSATqt-~svkdLaRL------------------------------------------------------ 266 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQT-KSVKDLARL------------------------------------------------------ 266 (758)
T ss_pred hCChhheeeeeecccc-hhHHHHHHh------------------------------------------------------
Confidence 4433 44588888882 122221110
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccC
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLI 1397 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li 1397 (2693)
...-|..+ .+.- +. ....=..|++. |
T Consensus 267 ----------sL~dP~~v----svhe-------------------~a----~~atP~~L~Q~----y------------- 292 (758)
T KOG0343|consen 267 ----------SLKDPVYV----SVHE-------------------NA----VAATPSNLQQS----Y------------- 292 (758)
T ss_pred ----------hcCCCcEE----EEec-------------------cc----cccChhhhhhe----E-------------
Confidence 00011111 0000 00 00000011111 1
Q ss_pred CCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1398 PKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1398 ~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
-++....|+.+|...|.... ..|.|||...-..+.++.+.+.. .|+..+.|+|.+++..|.++.++|...
T Consensus 293 ------~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 293 ------VIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred ------EEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 12334568999999998654 56899999888888888888764 589999999999999999999999764
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
. .++|++|+++++|||++.+|.||-||.|-+...|++|.||+.|.+..-+..+|-+ -+-||.++.+++.|.
T Consensus 365 ~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 365 R---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKLQKKK 435 (758)
T ss_pred c---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHHHHcC
Confidence 3 3699999999999999999999999999999999999999999998777665532 455688888887764
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=9.7e-17 Score=211.27 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
....|+.+|.+.+......+.++||||......+.|...|...|+++..|+|.+...+|..+...|..+ -++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g-----~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG-----AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC-----eEEEEc
Confidence 345699999999988777899999999999999999999999999999999998887777666666433 289999
Q ss_pred cccccccCc---cccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1487 RAGGVGVNL---QAAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1487 rAGGeGLNL---QaAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+.+|+|+|+ ..+. +||+||.+-|+..|.|+.||++|.|..-.+..| + +.|+.++.
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--i---s~eD~l~~ 546 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--I---SLEDDLLK 546 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE--E---cchHHHHH
Confidence 999999999 5777 999999999999999999999999977544333 2 33555554
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.4e-16 Score=204.23 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=106.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.+++..+...+..|||||......+.|...|...|+++..|+|... +|+..+..|...... |+|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 346999999999888777889999999999999999999999999999999865 566666666433333 899999
Q ss_pred ccccccCcc---ccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1488 AGGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1488 AGGeGLNLQ---aAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
++|+|+|+. .+. +||+||.|-|...|.|++||++|.|..-.+..| + +.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--L---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--e---chhHHHHHh
Confidence 999999998 444 999999999999999999999999976444333 3 346655544
No 74
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=9.1e-17 Score=211.51 Aligned_cols=368 Identities=15% Similarity=0.114 Sum_probs=203.1
Q ss_pred CcchHHHHHHHHHHHHHhhc------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
...|+||..+|+.++....+ ..+|||.+.+|+|||++++.++..++.... ...+|||||. .|..||.++|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-NPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-CCeEEEEECcHHHHHHHHHHHHh
Confidence 46899999999999877654 458999999999999999999888875433 3458999996 577999999999
Q ss_pred HCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--Ccccc-cCccEEEEccccccccccchHHHHHH
Q 000047 1162 WAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSK-IQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1162 waPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~k-ikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
+.+... .-.++.... ...+......|+|||++.|.+.... ..+.. ....+||+|||||... ..+.+.++
T Consensus 316 ~~~~~~--~~~~s~~~L----~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAEL----KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHHH----HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHH
Confidence 875321 111222222 1223334578999999999752211 11111 1223899999999632 23445564
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+...++|+|||||+...-.+-+ ..|...|+.++.... +.+.
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~~i~~Y~--------------------~~~A--- 430 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGRYLHRYF--------------------ITDA--- 430 (667)
T ss_pred hhCCCCcEEEEeCCCccccccccc--------------ccccCCCCCeEEEee--------------------HHHH---
Confidence 56778999999999753211111 111111111111100 0000
Q ss_pred hhhhhhHhHHhhcCc-cceeEeeec--cccHH-HHHHHHHH-HHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1318 FVLRRLKHKVENELP-EKIERLVRC--EASAY-QKLLMKRV-EENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP-~KiE~vV~c--eLSa~-Qk~LYk~L-ee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
+...+- +.......+ .++.. -...++.. ..............+......+..+..++..
T Consensus 431 ---------I~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------- 494 (667)
T TIGR00348 431 ---------IRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDR------- 494 (667)
T ss_pred ---------hhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHH-------
Confidence 000000 000000000 01000 00001110 0000000000000011111111111111110
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhc-----CCeEEEEeCCCCHH---
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGG--- 1463 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~r-----GikylRLDGSTS~e--- 1463 (2693)
.......+.+...+. ...+.|.+|||..+..+..+.+.|... +...+.++|+...+
T Consensus 495 ---------------~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~ 559 (667)
T TIGR00348 495 ---------------LESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEI 559 (667)
T ss_pred ---------------HHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHH
Confidence 001111222222221 223589999999999988888777543 34556677764432
Q ss_pred ------------------HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc-C
Q 000047 1464 ------------------DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI-G 1524 (2693)
Q Consensus 1464 ------------------ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI-G 1524 (2693)
....++++|.++ .++. |||.++.+.+|+|.+.++++++.-|--. +.++|++||+.|+ +
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~ 636 (667)
T TIGR00348 560 RDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDG 636 (667)
T ss_pred HHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccC
Confidence 234789999764 3344 5677799999999999999999888775 4589999999995 4
Q ss_pred Ccc-cEEEEEEEe
Q 000047 1525 QKR-DVLVLRFET 1536 (2693)
Q Consensus 1525 QkK-eV~VyRLIT 1536 (2693)
..| ...|+.++-
T Consensus 637 ~~K~~g~IvDy~g 649 (667)
T TIGR00348 637 KDKTFGLIVDYRG 649 (667)
T ss_pred CCCCCEEEEECcC
Confidence 434 467777754
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=1.3e-16 Score=207.49 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=106.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+.+.++...|..|||||......+.|..+|...|+++..|+|. ..+|+..|..|...... ++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 358888888888888899999999999999999999999999999999998 67999999999654443 8999999
Q ss_pred cccccCccc-------cCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQA-------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQa-------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|+|+.. .-+||+++.+-|...|.|+.||++|.|..-....|
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999999988 56999999999999999999999999987655444
No 76
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=2.3e-17 Score=211.56 Aligned_cols=358 Identities=16% Similarity=0.201 Sum_probs=223.2
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-CchHHHHHHHHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-SSVLPGWESEINFW 1162 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-tSLL~QW~eEfeKw 1162 (2693)
.+....+|+||..+++.+...+.++. ..+|++.||+|||.+||++|..|+..+...+ +|.++- ++|+.|-..+|..|
T Consensus 160 ~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KR-VLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 160 IDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKR-VLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhhe-eeEEechHHHHHHHHHHHHHh
Confidence 44457899999999999998877764 4789999999999999999999998766555 777776 57788989999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-----cccccCccEEEEccccccccccchHHHHH
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-----KLSKIQWHYIIIDEGHRIKNASCKLNADL 1237 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-----~L~kikWd~VIIDEAHRIKN~sSKlsraL 1237 (2693)
.|...+....... .....+.|+|+||+++....... .+..-.||+||||||||- ..+.++.+
T Consensus 239 ~P~~~~~n~i~~~----------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I 305 (875)
T COG4096 239 LPFGTKMNKIEDK----------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSI 305 (875)
T ss_pred CCCccceeeeecc----------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHH
Confidence 9976655433221 11236899999999998654322 355567999999999993 34445566
Q ss_pred HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHh-cCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh-
Q 000047 1238 KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWF-NKPFESNGDNSPDEALLSEEENLLIINRLHQVL- 1315 (2693)
Q Consensus 1238 k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F-~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL- 1315 (2693)
..|-...+++|||||-..--..-| .+| +.|...+. |...+
T Consensus 306 ~dYFdA~~~gLTATP~~~~d~~T~------------------~~F~g~Pt~~Ys--------------------leeAV~ 347 (875)
T COG4096 306 LDYFDAATQGLTATPKETIDRSTY------------------GFFNGEPTYAYS--------------------LEEAVE 347 (875)
T ss_pred HHHHHHHHHhhccCcccccccccc------------------cccCCCcceeec--------------------HHHHhh
Confidence 666667788889999432111111 112 23322211 00000
Q ss_pred hhhhhhhhHhHHhhcCccceeE-eeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1316 RPFVLRRLKHKVENELPEKIER-LVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~-vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
..|+ .|.+... .+.....-+ -|....+..... .+.. .+ ++
T Consensus 348 DGfL-----------vpy~vi~i~~~~~~~G~---~~~~~serek~~---------------g~~i-~~-------dd-- 388 (875)
T COG4096 348 DGFL-----------VPYKVIRIDTDFDLDGW---KPDAGSEREKLQ---------------GEAI-DE-------DD-- 388 (875)
T ss_pred cccc-----------CCCCceEEeeeccccCc---CcCccchhhhhh---------------cccc-Cc-------cc--
Confidence 0111 1221111 111111100 000000000000 0000 00 00
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcC---C---CeEEEEEcchHHHHHHHHHHhhc----CCe-EEEEeCCCCHH
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKAT---D---HRVLFFSTMTRLLDVMEDYLTFK----QYR-YLRLDGHTSGG 1463 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkat---G---hKVLIFSQft~tLDILed~L~~r----Gik-ylRLDGSTS~e 1463 (2693)
......-++..+-.....+.+++.|.++... | .|.||||....+++.|...|... +.+ ++.|+|...
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 0000000011111122334445555444333 3 69999999999999999999642 223 456777665
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC-------Cccc-EEEEEEE
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG-------QKRD-VLVLRFE 1535 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG-------QkKe-V~VyRLI 1535 (2693)
+=+..|+.|-. +..+-.|.++.+.+.+|||.+.|-.+||+-.-.+-..+.|.+||+-|+. |.|. ..||.++
T Consensus 467 ~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 467 QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 45667888866 4456678999999999999999999999999999999999999999964 3344 6677765
Q ss_pred e
Q 000047 1536 T 1536 (2693)
Q Consensus 1536 T 1536 (2693)
-
T Consensus 546 ~ 546 (875)
T COG4096 546 D 546 (875)
T ss_pred h
Confidence 4
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.74 E-value=1.1e-16 Score=219.30 Aligned_cols=328 Identities=15% Similarity=0.205 Sum_probs=189.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC-
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR- 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs- 1165 (2693)
|..++++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||||+.. +.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 56899999998876664 788899999999999755444433322 2345899999855 58899999988753
Q ss_pred -CcEEEEcCC----hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-
Q 000047 1166 -IHKIVYCGP----PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH- 1239 (2693)
Q Consensus 1166 -LkVIvy~Gs----~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~- 1239 (2693)
+.+.+..|. ..++... ...+..+.++|+|+|+++|.+..+ .+...++++|||||||+|....-..-+.|..
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~-~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEF-LERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHH-HHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 333333322 1223222 223445679999999999987554 4556679999999999986432221111111
Q ss_pred -hc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1240 -YQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1240 -Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
|. ....-++...|..+...++|..+.-| ...+..- ...
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l-----------~~~i~~~-~~~---------------------------- 267 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIREL-----------EEKIAEL-KDK---------------------------- 267 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHH-----------HHhhhhc-ccC----------------------------
Confidence 00 00000011111111112222222222 1111000 000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccHH--HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASAY--QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa~--Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
.....+....+++. ...++..+.. + ..+.. .. .++.+ .|-|+
T Consensus 268 ---------------~~q~ilfSAT~~~~~~~~~l~~~ll~-~-~v~~~-~~-------~~rnI-~~~yi---------- 311 (1176)
T PRK09401 268 ---------------KGVLVVSSATGRPRGNRVKLFRELLG-F-EVGSP-VF-------YLRNI-VDSYI---------- 311 (1176)
T ss_pred ---------------CceEEEEeCCCCccchHHHHhhccce-E-EecCc-cc-------ccCCc-eEEEE----------
Confidence 00000000000000 0000000000 0 00000 00 00110 01111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~t---LDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
....|...|.+++..+ +..+||||+.... ++.|.++|...|+++..+||++ .+.+++|
T Consensus 312 -----------~~~~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 312 -----------VDEDSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred -----------EcccHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 0114677788887655 4589999998766 9999999999999999999999 2346999
Q ss_pred hCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC------Cccchhhhhhhhccc
Q 000047 1473 NQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW------NPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1473 N~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW------NP~~diQAIGRAHRI 1523 (2693)
.++..+ +||+ |+++++|||++. +.+|||||.|- ....+.++++|+-++
T Consensus 373 ~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 373 EEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred HCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 988766 6677 699999999998 89999999998 777888999999754
No 78
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.8e-17 Score=194.78 Aligned_cols=332 Identities=18% Similarity=0.282 Sum_probs=217.6
Q ss_pred HHHhhhHHHHhhhccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHH-----HHHH
Q 000047 1061 YLESNEKYYLMAHSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALIC-----YLME 1135 (2693)
Q Consensus 1061 ~~e~~~~yy~lah~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa-----~Lle 1135 (2693)
|.....-|..+..+|+..-...|.-+ |-++-.-++ ++...|....||.|||+..|.--. ....
T Consensus 221 FddAFq~~pevmenIkK~GFqKPtPI--------qSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~ 288 (629)
T KOG0336|consen 221 FDDAFQCYPEVMENIKKTGFQKPTPI--------QSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288 (629)
T ss_pred HHHHHhhhHHHHHHHHhccCCCCCcc--------hhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchh
Confidence 33444556666666666555555443 544433233 377889889999999987753211 1111
Q ss_pred hcCCCCC-EEEEecCchHH-HHHHHHHHHC-CCCc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc
Q 000047 1136 TKNDRGP-FLVVVPSSVLP-GWESEINFWA-PRIH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS 1211 (2693)
Q Consensus 1136 ~k~~~gP-~LIVVPtSLL~-QW~eEfeKwa-PsLk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~ 1211 (2693)
.....+| +||+.|+..|. +-+-|..++. ..++ +.+|.|..... ++ .....+++++|+|+..|.+......+.
T Consensus 289 ~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e-qi---e~lkrgveiiiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 289 REQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE-QI---EDLKRGVEIIIATPGRLNDLQMDNVIN 364 (629)
T ss_pred hhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh-HH---HHHhcCceEEeeCCchHhhhhhcCeee
Confidence 1122222 69999987764 4566766553 3444 45555543221 11 223468999999999998766666677
Q ss_pred ccCccEEEEcccccccccc--chHHHHHHhhccccccccc-ccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1212 KIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHRLLLT-GTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1212 kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~RLLLT-GTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
.....|+|||||++|.... -+..+.|..++..+..+|| ||-
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW------------------------------------ 408 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW------------------------------------ 408 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccC------------------------------------
Confidence 7778999999999998754 4666777777776665554 442
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1289 NGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1289 ~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
|--+||+.....++ +.+.++-.+.|.+. ..
T Consensus 409 ----------------------------P~~VrrLa~sY~Ke--p~~v~vGsLdL~a~--------------------~s 438 (629)
T KOG0336|consen 409 ----------------------------PEGVRRLAQSYLKE--PMIVYVGSLDLVAV--------------------KS 438 (629)
T ss_pred ----------------------------chHHHHHHHHhhhC--ceEEEecccceeee--------------------ee
Confidence 00111111111110 00111111111000 00
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
+ .+ ++ .+...+.|++.+..++..+ ....|||||+....++|-|..-|..
T Consensus 439 V-------kQ-----~i------------------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l 487 (629)
T KOG0336|consen 439 V-------KQ-----NI------------------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCL 487 (629)
T ss_pred e-------ee-----eE------------------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhh
Confidence 0 00 00 0111234666666666554 4567999999999999999999999
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1449 KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1449 rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
.|+....|||.-.+.+|+.+++.|+.+.-. +|++|+.+++|||+.++.+|++||.|-|...|.+|+||++|.|.+-.
T Consensus 488 ~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 488 KGISSQSLHGNREQSDREMALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred cccchhhccCChhhhhHHHHHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 999999999999999999999999877544 79999999999999999999999999999999999999999997654
No 79
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.74 E-value=1.5e-16 Score=218.93 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=85.2
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC---------------------------------CeEEEEeCCCCHHHHHHHHHH
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ---------------------------------YRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG---------------------------------ikylRLDGSTS~eERqeiId~ 1471 (2693)
.++++||||+.+..++.|...|+... +....+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 114567899999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
|+++... +||+|.++++|||+..+|.||+|+.|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9887764 799999999999999999999999999999999999999985
No 80
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.73 E-value=2.7e-17 Score=203.48 Aligned_cols=312 Identities=16% Similarity=0.230 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC---CCcE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP---RIHK 1168 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP---sLkV 1168 (2693)
+.|..+|..++. +..-|+..--|+|||++...++..-+......--.|||+|+..+ .|.++-|.+.++ ++++
T Consensus 50 kiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 348888876665 66789999999999998755554433333333346999999777 567777887777 6788
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhc-ccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQ-SSH 1244 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lk-a~~ 1244 (2693)
.+|.|........ +.....+|+|-|+++|........+..-+.+++|+|||+.+-...+ .....+..+. .+.
T Consensus 126 svfIGGT~~~~d~----~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQ 201 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL----IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQ 201 (980)
T ss_pred EEEecCchhhhhh----hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhhe
Confidence 8998876654322 3345678999999999887777778888899999999999865443 2333344443 344
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhh-hhhhhhh
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLR-PFVLRRL 1323 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLr-PFLLRRt 1323 (2693)
.++.|||=-+ +|.+ +|.++++ |.++|.-
T Consensus 202 v~a~SATYp~-nLdn--------------------------------------------------~Lsk~mrdp~lVr~n 230 (980)
T KOG4284|consen 202 VAAFSATYPR-NLDN--------------------------------------------------LLSKFMRDPALVRFN 230 (980)
T ss_pred eeEEeccCch-hHHH--------------------------------------------------HHHHHhcccceeecc
Confidence 5667777421 1221 2333332 2222211
Q ss_pred HhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC
Q 000047 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~ 1403 (2693)
-.++. -+--|...+..| . |-+
T Consensus 231 ~~d~~-L~GikQyv~~~~---------------------------------------s-~nn------------------ 251 (980)
T KOG4284|consen 231 ADDVQ-LFGIKQYVVAKC---------------------------------------S-PNN------------------ 251 (980)
T ss_pred cCCce-eechhheeeecc---------------------------------------C-Ccc------------------
Confidence 11110 000000111111 1 100
Q ss_pred hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
..-.+--|++.|-+++..+.- ...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.++.-.. -||
T Consensus 252 sveemrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~---rIL 326 (980)
T KOG4284|consen 252 SVEEMRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV---RIL 326 (980)
T ss_pred hHHHHHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE---EEE
Confidence 000111266777777765532 367999999999999999999999999999999999999999999965433 379
Q ss_pred eeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
|||+..++|||-..++.||++|++-+...|.+|||||+|.|.+-
T Consensus 327 VsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 327 VSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred EecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999999753
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=209.24 Aligned_cols=340 Identities=19% Similarity=0.148 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC--C---CCCEEEEecCchHHH-HHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN--D---RGPFLVVVPSSVLPG-WESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~--~---~gP~LIVVPtSLL~Q-W~eEfeKw 1162 (2693)
..|+|.|..++..+.+ +.|.++..+||+|||..|+..+...+.... . .--+|.|.|..-|.+ -...++.|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 4789999999987765 999999999999999999876654443331 1 123799999877755 66677777
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccc--cCccEEEEcccccccc--ccchHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSK--IQWHYIIIDEGHRIKN--ASCKLNAD 1236 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~k--ikWd~VIIDEAHRIKN--~sSKlsra 1236 (2693)
.- ++.+-+-+|+...-. +.......+||+|||++.|.-......+.. -+..+|||||.|.+.+ ..+.++-.
T Consensus 97 ~~~~G~~v~vRhGDT~~~e---r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~ 173 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSE---KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS 173 (814)
T ss_pred HHHcCCccceecCCCChHH---hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhh
Confidence 53 566677777654332 233455789999999999965443322221 2457899999999986 45566655
Q ss_pred HHhh---c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1237 LKHY---Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1237 Lk~L---k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
|.++ . ...||+||||=- ++.++ ..||.+.-- +..
T Consensus 174 LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~------------~~~------------------------- 211 (814)
T COG1201 174 LERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD------------PCE------------------------- 211 (814)
T ss_pred HHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC------------ceE-------------------------
Confidence 5544 3 367899999962 33333 333322100 000
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
-|......+.+..+.++-. .+.
T Consensus 212 -------------Iv~~~~~k~~~i~v~~p~~---------------------------------------~~~------ 233 (814)
T COG1201 212 -------------IVDVSAAKKLEIKVISPVE---------------------------------------DLI------ 233 (814)
T ss_pred -------------EEEcccCCcceEEEEecCC---------------------------------------ccc------
Confidence 0000011111111111100 000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHHH
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ-YRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG-ikylRLDGSTS~eERqeiId~ 1471 (2693)
.. ..-...+.+.|.++.+....+|||++.+.+.+.+...|...+ ..+..-||+.+.+.|..+-++
T Consensus 234 -----------~~---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 234 -----------YD---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred -----------cc---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHH
Confidence 00 001223334444445555689999999999999999998877 888899999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh-cccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA-HRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA-HRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
|+++.-. .++||..+.+|||+-.+|.||.|.+|-.-...+||+||+ ||+|.... .++|+.+ .++.+...+..
T Consensus 300 lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~ 372 (814)
T COG1201 300 LKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLA 372 (814)
T ss_pred HhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHH
Confidence 9988755 688999999999999999999999999999999999999 66765443 3344555 67766666655
Q ss_pred HHHHHh
Q 000047 1551 KLGVAN 1556 (2693)
Q Consensus 1551 Kl~Li~ 1556 (2693)
+..+..
T Consensus 373 ~~a~~g 378 (814)
T COG1201 373 DLALEG 378 (814)
T ss_pred HHHHhC
Confidence 554443
No 82
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.73 E-value=4.2e-16 Score=204.09 Aligned_cols=328 Identities=15% Similarity=0.174 Sum_probs=198.2
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH---------HHHh---cCCCCCEEEEecCc
Q 000047 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY---------LMET---KNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1083 P~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~---------Lle~---k~~~gP~LIVVPtS 1150 (2693)
|..+....|++.|.+.=+.++..+..+...|+..+||+|||.|.=-++.. .+.. ....+++||++|..
T Consensus 153 ~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prr 232 (675)
T PHA02653 153 PEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRV 232 (675)
T ss_pred CCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHH
Confidence 44555578999888888888888888999999999999999874222221 1111 12235799999985
Q ss_pred hH-HHHHHHHHHHC-----CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccc
Q 000047 1151 VL-PGWESEINFWA-----PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224 (2693)
Q Consensus 1151 LL-~QW~eEfeKwa-----PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAH 1224 (2693)
.+ .+...++.+.. .+..+.+..|..... ... ......+++|+|..... ....++++|||||||
T Consensus 233 eLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~~--t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaH 301 (675)
T PHA02653 233 ALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LIN--TNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVH 301 (675)
T ss_pred HHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hhh--cccCCCCEEEEeCcccc-------cccccCCEEEccccc
Confidence 55 56677776432 234454555544321 111 11225689999854211 123467999999999
Q ss_pred ccccccchHHHHHHhhcc--cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1225 RIKNASCKLNADLKHYQS--SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1225 RIKN~sSKlsraLk~Lka--~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
.+-.....+...++.+.. +..+++|||.-. .... |..+|..|....
T Consensus 302 Er~~~~DllL~llk~~~~~~rq~ILmSATl~~-dv~~------------------l~~~~~~p~~I~------------- 349 (675)
T PHA02653 302 EHDQIGDIIIAVARKHIDKIRSLFLMTATLED-DRDR------------------IKEFFPNPAFVH------------- 349 (675)
T ss_pred cCccchhHHHHHHHHhhhhcCEEEEEccCCcH-hHHH------------------HHHHhcCCcEEE-------------
Confidence 986655444444443322 356999999721 1222 222222111000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhHHhh-cCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhC
Q 000047 1303 ENLLIINRLHQVLRPFVLRRLKHKVEN-ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICN 1381 (2693)
Q Consensus 1303 e~lliI~RLhkVLrPFLLRRtKkDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICn 1381 (2693)
+.. .+.+-.+..+.....+.+...
T Consensus 350 ------------------------I~grt~~pV~~~yi~~~~~~~~~~~------------------------------- 374 (675)
T PHA02653 350 ------------------------IPGGTLFPISEVYVKNKYNPKNKRA------------------------------- 374 (675)
T ss_pred ------------------------eCCCcCCCeEEEEeecCcccccchh-------------------------------
Confidence 000 000001111100000000000
Q ss_pred CccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDG 1458 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~r--GikylRLDG 1458 (2693)
|+ ...|..++ ..+..+ ...+..+|||+.....++.+.+.|... ++.+..|||
T Consensus 375 --y~----------------------~~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG 429 (675)
T PHA02653 375 --YI----------------------EEEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHG 429 (675)
T ss_pred --hh----------------------HHHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccC
Confidence 00 00011111 222222 224568999999999999999999876 799999999
Q ss_pred CCCHHHHHHHHHHH-hCCCCCceEEEeeecccccccCccccCEEEEecC---C---------CCccchhhhhhhhcccCC
Q 000047 1459 HTSGGDRGALIDKF-NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT---D---------WNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1459 STS~eERqeiId~F-N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp---p---------WNP~~diQAIGRAHRIGQ 1525 (2693)
.++.. ++.+++| +.+. +-+||+|+++++||++.++++||.++. + .+...+.||.||++|.
T Consensus 430 ~Lsq~--eq~l~~ff~~gk---~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-- 502 (675)
T PHA02653 430 KVPNI--DEILEKVYSSKN---PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-- 502 (675)
T ss_pred CcCHH--HHHHHHHhccCc---eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC--
Confidence 99864 5677787 3433 348999999999999999999999982 2 2566789999999998
Q ss_pred cccEEEEEEEeCCCHH
Q 000047 1526 KRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1526 kKeV~VyRLIT~gSIE 1541 (2693)
++-.+|+|++.....
T Consensus 503 -~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 503 -SPGTYVYFYDLDLLK 517 (675)
T ss_pred -CCCeEEEEECHHHhH
Confidence 457888999887653
No 83
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.9e-16 Score=194.48 Aligned_cols=327 Identities=21% Similarity=0.288 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcC-----------CCCC-EEEEecCchH-HHHHHH
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKN-----------DRGP-FLVVVPSSVL-PGWESE 1158 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~-----------~~gP-~LIVVPtSLL-~QW~eE 1158 (2693)
+.|...|..++. .....|-|.|||+|||+...-.|.. +.+... ...| .|||+|+..| .|...-
T Consensus 206 ~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~H 282 (731)
T KOG0347|consen 206 EIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQH 282 (731)
T ss_pred cchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHH
Confidence 335444444432 2256678999999999876544443 222111 1122 5999999665 666666
Q ss_pred HHHHC--CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc--cccc-CccEEEEcccccc--ccccc
Q 000047 1159 INFWA--PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK--LSKI-QWHYIIIDEGHRI--KNASC 1231 (2693)
Q Consensus 1159 feKwa--PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~--L~ki-kWd~VIIDEAHRI--KN~sS 1231 (2693)
|...+ +.+++..+.|.-...+ ++.+.....+|||+|+++|...+.... +.++ +..++||||++|| +++-.
T Consensus 283 l~ai~~~t~i~v~si~GGLavqK---QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 283 LKAIAEKTQIRVASITGGLAVQK---QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred HHHhccccCeEEEEeechhHHHH---HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHH
Confidence 66554 5788888888766544 233445689999999999965443222 2222 3579999999999 34444
Q ss_pred hHHHHHHhhc------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1232 KLNADLKHYQ------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1232 KlsraLk~Lk------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
.+.+.|..+. .+..|+.|||-- |. ...|..........+ ....
T Consensus 360 Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~--------------~~~~~~~~~k~~~k~-----~~~~ 408 (731)
T KOG0347|consen 360 ELSKLLKHLNEEQKNRQRQTLVFSATLT------------LV--------------LQQPLSSSRKKKDKE-----DELN 408 (731)
T ss_pred HHHHHHHHhhhhhcccccceEEEEEEee------------hh--------------hcChhHHhhhccchh-----hhhh
Confidence 5555555443 122266666641 00 000000000000000 0000
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
..+..| ++ .+...=+++ +| ++++. ......+.+-+-.| .| +
T Consensus 409 ~kiq~L---mk---------~ig~~~kpk---ii--D~t~q--------------------~~ta~~l~Es~I~C-~~-~ 449 (731)
T KOG0347|consen 409 AKIQHL---MK---------KIGFRGKPK---II--DLTPQ--------------------SATASTLTESLIEC-PP-L 449 (731)
T ss_pred HHHHHH---HH---------HhCccCCCe---eE--ecCcc--------------------hhHHHHHHHHhhcC-Cc-c
Confidence 001111 11 111111111 11 11111 11122222223333 11 1
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
+-|. | |.-+| ..-..|.||||+.++.+..|.-+|...++..+.||..|.+.+|
T Consensus 450 ------eKD~-----y-------------lyYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 450 ------EKDL-----Y-------------LYYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQR 502 (731)
T ss_pred ------ccce-----e-------------EEEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 0000 0 00011 1235689999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCC
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQ 1525 (2693)
-+.+++|.+... .+||+|+++.+|||++.+++||+|..|..-..|++|-||+.|.+.
T Consensus 503 LknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 503 LKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccC
Confidence 999999976544 489999999999999999999999999999999999999999875
No 84
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2e-16 Score=190.97 Aligned_cols=322 Identities=18% Similarity=0.240 Sum_probs=208.5
Q ss_pred cccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHH-HHhcC----CCCC-EEEEec
Q 000047 1075 IKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL-METKN----DRGP-FLVVVP 1148 (2693)
Q Consensus 1075 ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~L-le~k~----~~gP-~LIVVP 1148 (2693)
+.+.--+.|..+ |..+|..++. +.+.+.-.-||+|||...+..+... +..+. ..+| .+|+||
T Consensus 34 i~~lG~ekpTlI--------Qs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvP 101 (569)
T KOG0346|consen 34 ITKLGWEKPTLI--------QSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVP 101 (569)
T ss_pred HHHhCcCCcchh--------hhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEec
Confidence 333344566654 7888887776 7777777899999999887655543 33322 2233 599999
Q ss_pred CchH-HHHHHHHH---HHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc-ccccCccEEEEcc
Q 000047 1149 SSVL-PGWESEIN---FWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK-LSKIQWHYIIIDE 1222 (2693)
Q Consensus 1149 tSLL-~QW~eEfe---KwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~-L~kikWd~VIIDE 1222 (2693)
+..| .|....|. .+|+ .++++-...+..+.. .........+|||+|+..+.+...... .......++|+||
T Consensus 102 TkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv---~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 102 TKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV---NSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH---HHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 8666 45555554 4555 455554443332221 112345788999999999987664444 3444678999999
Q ss_pred ccccccccchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1223 GHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1223 AHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
|+-+...+. .++
T Consensus 179 ADLllsfGY-------------------------------------------eed------------------------- 190 (569)
T KOG0346|consen 179 ADLLLSFGY-------------------------------------------EED------------------------- 190 (569)
T ss_pred hhhhhhccc-------------------------------------------HHH-------------------------
Confidence 987632220 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHh-hC
Q 000047 1303 ENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNI-CN 1381 (2693)
Q Consensus 1303 e~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKI-Cn 1381 (2693)
|.+ +...||+.. |..|+. ..+...+..|.++ |.
T Consensus 191 --------lk~-------------l~~~LPr~~-----------Q~~LmS--------------ATl~dDv~~LKkL~l~ 224 (569)
T KOG0346|consen 191 --------LKK-------------LRSHLPRIY-----------QCFLMS--------------ATLSDDVQALKKLFLH 224 (569)
T ss_pred --------HHH-------------HHHhCCchh-----------hheeeh--------------hhhhhHHHHHHHHhcc
Confidence 100 112344221 111110 1122333445444 44
Q ss_pred CccccchhhhhhhccCCCCCCChhh---hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1382 HPYLSQLHAEEVDTLIPKHYLPPIV---RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1382 HPyL~~~~~EEid~li~~~~l~~Lv---r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.|.+....+.+.. +...+...+ ..-.||.+|.-+|+ |.--..|.|||.+..+.+-.|.-+|+..|++.+.|+|
T Consensus 225 nPviLkl~e~el~---~~dqL~Qy~v~cse~DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNs 300 (569)
T KOG0346|consen 225 NPVILKLTEGELP---NPDQLTQYQVKCSEEDKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNS 300 (569)
T ss_pred CCeEEEeccccCC---CcccceEEEEEeccchhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcc
Confidence 5666554443332 111111222 22347777776664 3333569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeec--------------------------c---------cccccCccccCEEEE
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIR--------------------------A---------GGVGVNLQAADTVII 1503 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTr--------------------------A---------GGeGLNLQaADtVIi 1503 (2693)
.++..-|..+|++||.+--+ +||+|+ . .++|||++.+.+||+
T Consensus 301 eLP~NSR~Hii~QFNkG~Yd---ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN 377 (569)
T KOG0346|consen 301 ELPANSRCHIIEQFNKGLYD---IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN 377 (569)
T ss_pred cccccchhhHHHHhhCccee---EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee
Confidence 99999999999999887543 788888 1 137999999999999
Q ss_pred ecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1504 FDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1504 yDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
||+|-++..|++|+||+.|-|.+-.+.-|
T Consensus 378 FD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 378 FDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred cCCCCchHHHHHhccccccCCCCCceEEE
Confidence 99999999999999999998866554433
No 85
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=2.4e-17 Score=192.63 Aligned_cols=324 Identities=19% Similarity=0.242 Sum_probs=218.7
Q ss_pred hccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1073 HSIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1073 h~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
..|.|.-.+.|+ |.|.+.+.-.+. +.+.+.-.-.|+|||-..+-.+...+..+...--.+|+||...+
T Consensus 98 mgIfe~G~ekPS--------PiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 98 MGIFEKGFEKPS--------PIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTREL 165 (459)
T ss_pred HHHHHhccCCCC--------Cccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchh
Confidence 345555555554 447777765554 33333346789999987665555554444444346999998665
Q ss_pred ----HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1153 ----PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1153 ----~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
.|...++.++. ++++.+..|....|+.+++ .....+++|.|+.++.....+..-...++.++|+|||+++..
T Consensus 166 ALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hHHHHHHHHHHhccc-CeEEEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc
Confidence 34556666776 4888888888877776543 246889999999999887666666666789999999999855
Q ss_pred ccch--HHHHHHhhc-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1229 ASCK--LNADLKHYQ-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1229 ~sSK--lsraLk~Lk-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
...+ ..+.+..+. .+..|+.|||--
T Consensus 242 ~~F~~~~e~li~~lP~~rQillySATFP---------------------------------------------------- 269 (459)
T KOG0326|consen 242 VDFQPIVEKLISFLPKERQILLYSATFP---------------------------------------------------- 269 (459)
T ss_pred hhhhhHHHHHHHhCCccceeeEEecccc----------------------------------------------------
Confidence 3321 112222221 222233344320
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
-.++.||-|.++ .||.
T Consensus 270 -------~tVk~Fm~~~l~---------------------------------------------------------kPy~ 285 (459)
T KOG0326|consen 270 -------LTVKGFMDRHLK---------------------------------------------------------KPYE 285 (459)
T ss_pred -------hhHHHHHHHhcc---------------------------------------------------------Ccce
Confidence 001122222221 2222
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
....++-. +..-..+..++...-|+-.|..++.+|.- ...||||+.+..+++|...+...||...++|..|.++.|
T Consensus 286 INLM~eLt--l~GvtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 286 INLMEELT--LKGVTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHR 361 (459)
T ss_pred eehhhhhh--hcchhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhh
Confidence 11111000 00000011234445688888888887754 368999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1466 GALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1466 qeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
..+...|+++... .|++|+..-+|||+|+.++||+||.+.|+..|++|+||.+|.|- --..+.||+-
T Consensus 362 NrVFHdFr~G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh--lGlAInLity 428 (459)
T KOG0326|consen 362 NRVFHDFRNGKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH--LGLAINLITY 428 (459)
T ss_pred hhhhhhhhccccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC--cceEEEEEeh
Confidence 9999999887654 68899999999999999999999999999999999999999994 3345556553
No 86
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.70 E-value=2.1e-15 Score=185.88 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ--YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG--ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
.+.|+||||+....++.|...|...+ +.+..++|.++..+|.+.. .. .+||+|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 22 28999999999999975 4666
Q ss_pred EecCCCCccchhhhhhhhc
Q 000047 1503 IFDTDWNPQVDLQAQARAH 1521 (2693)
Q Consensus 1503 iyDppWNP~~diQAIGRAH 1521 (2693)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 67 678899999999985
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.70 E-value=1.5e-15 Score=193.57 Aligned_cols=303 Identities=18% Similarity=0.284 Sum_probs=205.4
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|-..|..++.-+..=.... .+-+|-.++|+|||++|+..++..++.+.. +.+.+|+.+| .|....|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q---~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ---AALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe---eEEeccHHHHHHHHHHHHHHHhhh
Confidence 467788999998776533322 345888999999999998777777665443 6899999988 678999999997
Q ss_pred -CCcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 -RIHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++++.+..|... .|+ .....+..+..++||-|+..|... ..-.+..+|||||-||+.-. ....|+.-
T Consensus 338 ~~i~V~lLtG~~kgk~r~-~~l~~l~~G~~~ivVGTHALiQd~-----V~F~~LgLVIiDEQHRFGV~---QR~~L~~KG 408 (677)
T COG1200 338 LGIRVALLTGSLKGKARK-EILEQLASGEIDIVVGTHALIQDK-----VEFHNLGLVIIDEQHRFGVH---QRLALREKG 408 (677)
T ss_pred cCCeEEEeecccchhHHH-HHHHHHhCCCCCEEEEcchhhhcc-----eeecceeEEEEeccccccHH---HHHHHHHhC
Confidence 577777777643 333 334567788999999999998753 23345689999999998432 23333332
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. .++.|.||||||..++.= ..|+ +.+
T Consensus 409 ~~~Ph~LvMTATPIPRTLAl--------------------t~fg-------Dld-------------------------- 435 (677)
T COG1200 409 EQNPHVLVMTATPIPRTLAL--------------------TAFG-------DLD-------------------------- 435 (677)
T ss_pred CCCCcEEEEeCCCchHHHHH--------------------HHhc-------ccc--------------------------
Confidence 3 579999999998766531 0011 100
Q ss_pred hhhhHhHHhhcCccceeEee-eccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCC
Q 000047 1320 LRRLKHKVENELPEKIERLV-RCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIP 1398 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV-~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~ 1398 (2693)
--+.++||+...-+. .|-.......+|+.+.+.+
T Consensus 436 -----vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei---------------------------------------- 470 (677)
T COG1200 436 -----VSIIDELPPGRKPITTVVIPHERRPEVYERIREEI---------------------------------------- 470 (677)
T ss_pred -----chhhccCCCCCCceEEEEeccccHHHHHHHHHHHH----------------------------------------
Confidence 013456776532222 1111122223343333221
Q ss_pred CCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHh--hcCCeEEEEeCCCCHHHHHHH
Q 000047 1399 KHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLT--FKQYRYLRLDGHTSGGDRGAL 1468 (2693)
Q Consensus 1399 ~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~--~rGikylRLDGSTS~eERqei 1468 (2693)
..|+++.+.|.-.+ .+..+...|. ..++++..+||.|+.++++++
T Consensus 471 -------------------------~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 471 -------------------------AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred -------------------------HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 13444444443221 1222333332 236778999999999999999
Q ss_pred HHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccE
Q 000047 1469 IDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1469 Id~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV 1529 (2693)
+.+|+++..+ +|+||.+...|||+++|..+||+|.. +--.+..|--||++|=+...-|
T Consensus 526 M~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 526 MEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 9999998887 89999999999999999999999987 5788899999999996654433
No 88
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=2.3e-15 Score=200.83 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=92.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
...+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -|||+|+++++||++.++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEEE
Confidence 56899999999999999999976 47999999999999999999999976543 3799999999999999999999
Q ss_pred EecCC----CCccc--------------hhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1503 IFDTD----WNPQV--------------DLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1503 iyDpp----WNP~~--------------diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.++.+ |||.. +.||.||++|. ++-.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99976 56655 68999999998 456789998864
No 89
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.2e-15 Score=181.72 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=104.7
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+++|..+..- .. =...||||+.+..+.+|...|...|+.+..|+|.+..++|..++++|+.+... +||+|.++
T Consensus 316 ~K~~~l~~lyg~-~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ 390 (477)
T KOG0332|consen 316 DKYQALVNLYGL-LT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVC 390 (477)
T ss_pred hHHHHHHHHHhh-hh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechh
Confidence 377777774432 22 23679999999999999999999999999999999999999999999998876 89999999
Q ss_pred ccccCccccCEEEEecCCC------CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1490 GVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppW------NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.+|||.+..+.||+||+|- .+..|++||||++|.|.+ -.++.|+..+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk--G~a~n~v~~~ 443 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK--GLAINLVDDK 443 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc--ceEEEeeccc
Confidence 9999999999999999984 578999999999999954 3455566553
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.66 E-value=5.2e-15 Score=198.18 Aligned_cols=338 Identities=19% Similarity=0.205 Sum_probs=229.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C-
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P- 1164 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P- 1164 (2693)
.||.||.++++.+.+ +.+.|+.-.||+|||...+..|...+...... ..|+|-|+.-| .+..+.|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999987775 89999999999999999988777666554444 58999997655 55888888875 3
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHh----ccCCCcccccCccEEEEcccccccc-ccchHHHHHHh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMN----KHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKH 1239 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik----~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~ 1239 (2693)
.+.+..|.|.....++ ..+.....+||||+|++|.- ..+...+...+++||||||+|-.+. ..|...-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r---~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEER---RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHH---HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 5678889997654332 13445789999999998854 2233344445599999999999877 34444444444
Q ss_pred hc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1240 YQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1240 Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
+. ....|+.|||- .+..|+. .+.|...+...-
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--~np~e~~-----------------~~l~~~~f~~~v--------------------- 261 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--ANPGEFA-----------------EELFGRDFEVPV--------------------- 261 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--cChHHHH-----------------HHhcCCcceeec---------------------
Confidence 32 23347777775 2222211 111222111100
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
.+..-|.-..+++....-.....
T Consensus 262 ---------------~~~g~~~~~~~~~~~~p~~~~~~------------------------------------------ 284 (851)
T COG1205 262 ---------------DEDGSPRGLRYFVRREPPIRELA------------------------------------------ 284 (851)
T ss_pred ---------------cCCCCCCCceEEEEeCCcchhhh------------------------------------------
Confidence 00001111111111110000000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHH----HHHhhcC----CeEEEEeCCCCHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVME----DYLTFKQ----YRYLRLDGHTSGG 1463 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILe----d~L~~rG----ikylRLDGSTS~e 1463 (2693)
.. -...++..+..++..+...+-+.|+|+.+...+..+. ..+...+ ..+..+.|++..+
T Consensus 285 ------------~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 285 ------------ES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred ------------hh-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 00 0123566677777778888999999999999998886 4444445 5688889999999
Q ss_pred HHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1464 DRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1464 ERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
+|.++...|+.++.. ++++|.++..||++...|.||.+-.|- .-..+.|+.||++|-+| ...++...-.+-++.
T Consensus 352 er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~~~~~d~ 426 (851)
T COG1205 352 ERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ--ESLVLVVLRSDPLDS 426 (851)
T ss_pred HHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC--CceEEEEeCCCccch
Confidence 999999999988876 899999999999999999999999999 78999999999999994 444444444777887
Q ss_pred HHHHHHHH
Q 000047 1543 QVRASAEH 1550 (2693)
Q Consensus 1543 kIleraek 1550 (2693)
.....-..
T Consensus 427 yy~~~p~~ 434 (851)
T COG1205 427 YYLRHPEE 434 (851)
T ss_pred hhhhCcHh
Confidence 76654443
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.66 E-value=3.5e-15 Score=196.95 Aligned_cols=367 Identities=19% Similarity=0.209 Sum_probs=202.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPsLk 1167 (2693)
..|.++|.++++.+.... .+...+|...||+|||..++.++...+.. .+.+||++|.. +..||.+.|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999887632 34568899999999999998877766654 24589999985 56889999998874 56
Q ss_pred EEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHH--HHH---H
Q 000047 1168 KIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLN--ADL---K 1238 (2693)
Q Consensus 1168 VIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKls--raL---k 1238 (2693)
+.+++|.. .++.+.+. .+..+..+|||+|+..+.. ...++.+|||||+|...-. ....+ +.+ +
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~~-------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALFL-------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhcc-------cccCCCEEEEECCCccccccCcCCCCcHHHHHHHH
Confidence 77777653 33433332 2445678999999987642 2345789999999986421 11111 111 1
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.......|++||||. ++.++... .+.+.- -.+.+.+.
T Consensus 290 a~~~~~~~il~SATps---~~s~~~~~----~g~~~~-~~l~~r~~---------------------------------- 327 (679)
T PRK05580 290 AKLENIPVVLGSATPS---LESLANAQ----QGRYRL-LRLTKRAG---------------------------------- 327 (679)
T ss_pred hhccCCCEEEEcCCCC---HHHHHHHh----ccceeE-EEeccccc----------------------------------
Confidence 224456788999994 22222110 000000 00000000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccc-------cHHHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCcccc
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEA-------SAYQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceL-------Sa~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
...+|. + .++.... ...-..+++.+.+.+..... .+.+... ... +..-|.+....
T Consensus 328 ----------~~~~p~-v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~-~~~-~C~~Cg~~~~C 393 (679)
T PRK05580 328 ----------GARLPE-V-EIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYA-PFL-LCRDCGWVAEC 393 (679)
T ss_pred ----------cCCCCe-E-EEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-Cce-EhhhCcCccCC
Confidence 000110 0 0000000 00112233444333321100 0000000 011 11122222111
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCC--H
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTS--G 1462 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS--~ 1462 (2693)
..-...+. .......-....||....+-...+.+ |.. .|..+..-.+.+++.|... ++++.++|+.+. .
T Consensus 394 ~~C~~~l~--~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~ 466 (679)
T PRK05580 394 PHCDASLT--LHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFPEARILRIDRDTTRRK 466 (679)
T ss_pred CCCCCcee--EECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccc
Confidence 00000000 00000000111222211111111111 111 2444455566777777654 889999999986 4
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC---CCc---------cchhhhhhhhcccCCcccEE
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD---WNP---------QVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp---WNP---------~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+++++++++|.+++.+ +||+|+....|+|++.++.|+++|.| +.| ..+.|+.||++|.+....|.
T Consensus 467 ~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 467 GALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred hhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 6799999999987776 89999999999999999999988776 223 57899999999988776666
Q ss_pred EEEE
Q 000047 1531 VLRF 1534 (2693)
Q Consensus 1531 VyRL 1534 (2693)
+...
T Consensus 544 iqT~ 547 (679)
T PRK05580 544 IQTY 547 (679)
T ss_pred EEeC
Confidence 5543
No 92
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.4e-15 Score=199.10 Aligned_cols=321 Identities=18% Similarity=0.249 Sum_probs=207.2
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCC-EEEEecCchH-HHHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGP-FLVVVPSSVL-PGWESEINF 1161 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP-~LIVVPtSLL-~QW~eEfeK 1161 (2693)
....++.|..++..+.+ ++.+|....+|+|||+..+..+....... ...|| .||+||+.-+ .|..+++.+
T Consensus 385 y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 35778889888887776 88999999999999998855444322221 12356 4999998665 455555555
Q ss_pred HC--CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC---cccccCccEEEEcccccccccc--chHH
Q 000047 1162 WA--PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP---KLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1162 wa--PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~---~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
|+ -+++++..+|.......+ ..+. ....|+|+|...++...... .....+..|+|+|||+||-... -+.+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qi--aelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQI--AELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHhhcCceEEEecCCccHHHHH--HHHh-cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 54 245555544544333322 2233 34899999999887543221 2333456799999999984211 1111
Q ss_pred HHHHhhccccc-ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1235 ADLKHYQSSHR-LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1235 raLk~Lka~~R-LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
+.|..+...+- ++.+|| |
T Consensus 538 ~Ii~nlrpdrQtvlfSat------------------------------f------------------------------- 556 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSAT------------------------------F------------------------------- 556 (997)
T ss_pred hHHhhcchhhhhhhhhhh------------------------------h-------------------------------
Confidence 12211111000 000111 0
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
|-.+.-+...|.. +|-. .++.. .-.+|+.+ .+.-.+|.
T Consensus 557 ---pr~m~~la~~vl~-~Pve--iiv~~-----~svV~k~V-------------------~q~v~V~~------------ 594 (997)
T KOG0334|consen 557 ---PRSMEALARKVLK-KPVE--IIVGG-----RSVVCKEV-------------------TQVVRVCA------------ 594 (997)
T ss_pred ---hHHHHHHHHHhhc-CCee--EEEcc-----ceeEeccc-------------------eEEEEEec------------
Confidence 0011122222333 3321 11100 00000000 00000110
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.-..||..|.++|..+.. ..++|||++....+|.|..-|...||....|||+.++.+|...|.+|+
T Consensus 595 -------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK 660 (997)
T KOG0334|consen 595 -------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK 660 (997)
T ss_pred -------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh
Confidence 023489999999988665 779999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1474 QQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1474 ~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
++.. .+|++|++...|||......||+||.+--...|.+|.||++|.|.+- ..|-|++.
T Consensus 661 ~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 661 NGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred ccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 7655 49999999999999999999999999999999999999999999776 45555555
No 93
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.65 E-value=9e-15 Score=195.55 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=92.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
.+..+|||+.....++.+.+.|.. .++.++.|||.++.++|.+++..|..+.. -|||+|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r---kVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR---KVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe---EEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 57889999999999999999999965543 489999999999999999999
Q ss_pred EEecCC----CCcc--------------chhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1502 IIFDTD----WNPQ--------------VDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1502 IiyDpp----WNP~--------------~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|.++.. |+|. .++||.||++|. .+-.+|+|+++..
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 997765 3332 579999999997 3668899988654
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.63 E-value=2e-14 Score=197.70 Aligned_cols=314 Identities=19% Similarity=0.289 Sum_probs=181.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC-
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR- 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs- 1165 (2693)
+..+.++|..++..++. +.+.++...||+|||..++.++.++... ...+|||+|+..| .|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34788999998877664 7788999999999998665555444322 3458999998555 7899999988753
Q ss_pred -CcE---EEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1166 -IHK---IVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1166 -LkV---Ivy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+.. .+|+|...... ......+..+.++|+|+|+++|.+..+. +.. ++++|||||||+|.......-+.|.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd~il~-- 223 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVDKLLK-- 223 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHHHHHH--
Confidence 222 24666543222 1112334456799999999999875432 333 7999999999999653322222221
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
|.|=- ...+..+|.+++. +.. . .....++++..+++
T Consensus 224 -------llGF~-~e~i~~il~~~~~---~~~--------------------~---------~~~~~~~~~~~~~~---- 259 (1171)
T TIGR01054 224 -------LLGFS-EELIEKAWKLIRL---RLK--------------------L---------YRALHAKKRLELLE---- 259 (1171)
T ss_pred -------HcCCC-HHHHHHHHHHhhh---ccc--------------------c---------chHHHHHHHHHHHH----
Confidence 11100 0001111211111 000 0 00001122222211
Q ss_pred hhhHhHHhhcCcccee-EeeeccccH--H--HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1321 RRLKHKVENELPEKIE-RLVRCEASA--Y--QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE-~vV~ceLSa--~--Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
.+|.+.. .++.+..|. . ...+++.+ +. +..... ...++.+ .|.|
T Consensus 260 ---------~~~~~~q~~li~~SAT~~p~~~~~~l~r~l---l~-~~v~~~------~~~~r~I-~~~~----------- 308 (1171)
T TIGR01054 260 ---------AIPGKKRGCLIVSSATGRPRGKRAKLFREL---LG-FEVGGG------SDTLRNV-VDVY----------- 308 (1171)
T ss_pred ---------hhhhccCcEEEEEeCCCCccccHHHHcccc---cc-eEecCc------cccccce-EEEE-----------
Confidence 1222211 122222221 0 01111111 00 000000 0001110 0111
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcch---HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMT---RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft---~tLDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
+....+...|.++|..+ +..+|||++.. ..++.|..+|...|+++..+||.++ +..+++|
T Consensus 309 ----------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~F 371 (1171)
T TIGR01054 309 ----------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKF 371 (1171)
T ss_pred ----------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHH
Confidence 11112345666777654 56899999998 9999999999999999999999986 3789999
Q ss_pred hCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC
Q 000047 1473 NQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW 1508 (2693)
Q Consensus 1473 N~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW 1508 (2693)
+++..+ +||+ |+++++||||+. +++|||||+|-
T Consensus 372 r~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 372 AEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 988766 6777 599999999999 89999999994
No 95
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=1.5e-15 Score=157.61 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+..|..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+++.. .+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChh
Confidence 58999999999887678999999999999999999999889999999999999999999999987763 488899999
Q ss_pred ccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
++|+|++.+++||+++++|++..++|++||++|.|++..|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 96
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=8.8e-16 Score=167.70 Aligned_cols=157 Identities=27% Similarity=0.372 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHHHHHhhcC---CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ---LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~---lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP 1164 (2693)
.+||+||.+++.-++..+... .+++|..+||+|||++++.++.++.. ++|||||. +++.||..+|..+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 479999999999999887765 88999999999999999998888865 69999998 777899999988876
Q ss_pred CCcEEEEcCChH----------HHHHHHHhhhhcCCccEEEEcHHHHHhccCC-----------CcccccCccEEEEccc
Q 000047 1165 RIHKIVYCGPPE----------ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-----------PKLSKIQWHYIIIDEG 1223 (2693)
Q Consensus 1165 sLkVIvy~Gs~~----------eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-----------~~L~kikWd~VIIDEA 1223 (2693)
............ ...............++++++|+.+...... ..+....+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 554443221100 0000011223356789999999999764321 1234457899999999
Q ss_pred cccccccchHHHHHHhhcccccccccccCC
Q 000047 1224 HRIKNASCKLNADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1224 HRIKN~sSKlsraLk~Lka~~RLLLTGTPL 1253 (2693)
|++.+... ++.+..+...++|+|||||.
T Consensus 156 H~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 99866543 55555588889999999995
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=5.5e-15 Score=206.79 Aligned_cols=340 Identities=18% Similarity=0.296 Sum_probs=194.0
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP-- 1164 (2693)
|..++++|..++..++. +.+.++..+||+|||...+.++.++.. ....+|||+|+.. +.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34689999999988776 778899999999999844333333321 1234899999855 5788888888764
Q ss_pred --CCcEEEEcCChHHHHH-HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1165 --RIHKIVYCGPPEERRR-LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~-l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
++.+..++|......+ .....+..+.++|+|+|++.+...... +...++++|||||||+|..+.-..-+.|.
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~~~~i~~iVVDEAD~ml~~~knid~~L~--- 224 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MKHLKFDFIFVDDVDAFLKASKNIDRSLQ--- 224 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--HhhCCCCEEEEECceeccccccccchhhh---
Confidence 3556677776543322 112234456799999999988764432 23367899999999999543211111111
Q ss_pred ccccccccccCCCCCHH-HHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLE-ELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLe-ELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
|-| +...+. ..|.++... +. ... +.....+.+|...+
T Consensus 225 ------llG--F~~e~~~~~~~il~~~-----------------~~---~~~---------~~~~~~~~~l~~~~----- 262 (1638)
T PRK14701 225 ------LLG--FYEEIIEKAWKIIYLK-----------------KQ---GNI---------EDAMEKREILNKEI----- 262 (1638)
T ss_pred ------cCC--ChHHHHHHHHHhhhcc-----------------cc---ccc---------chhhhhhhhhhhhh-----
Confidence 000 000000 001111100 00 000 00000112222221
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHH-HHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQK-LLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk-~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
..+|......+.+..|...+ ...+.+.+.+. +...... ..++.+ .|.|+.
T Consensus 263 --------~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~-f~v~~~~------~~lr~i-~~~yi~------------- 313 (1638)
T PRK14701 263 --------EKIGNKIGCLIVASATGKAKGDRVKLYRELLG-FEVGSGR------SALRNI-VDVYLN------------- 313 (1638)
T ss_pred --------hhcCCCccEEEEEecCCCchhHHHHHhhcCeE-EEecCCC------CCCCCc-EEEEEE-------------
Confidence 12233322223222221110 01111111000 0000000 000000 011100
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHH---HHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCC
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRL---LDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQD 1476 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~t---LDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~d 1476 (2693)
.....| ..|.++|..+ +..+||||+.... ++.|.++|...|+++..+||. |.+.+++|.+++
T Consensus 314 ------~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~ 378 (1638)
T PRK14701 314 ------PEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE 378 (1638)
T ss_pred ------CCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC
Confidence 011113 4566777654 5689999987664 589999999999999999994 999999999888
Q ss_pred CCceEEEeee----cccccccCccc-cCEEEEecCCC---Cccchhhhh-------------hhhcccCCccc
Q 000047 1477 SPFFIFLLSI----RAGGVGVNLQA-ADTVIIFDTDW---NPQVDLQAQ-------------ARAHRIGQKRD 1528 (2693)
Q Consensus 1477 Sd~fVfLLST----rAGGeGLNLQa-ADtVIiyDppW---NP~~diQAI-------------GRAHRIGQkKe 1528 (2693)
.+ +||+| +++++|||++. +.+|||||.|- +...+.|.. ||++|-|..-+
T Consensus 379 ~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 379 ID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred CC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 76 78888 57889999998 99999999998 777676766 99999887544
No 98
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.2e-15 Score=180.01 Aligned_cols=315 Identities=18% Similarity=0.253 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH-HHHHHHHCC--CCcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW-ESEINFWAP--RIHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW-~eEfeKwaP--sLkVI 1169 (2693)
..|..||--.+. +.+.+.-...|+|||.+.+..++..+.......=+||++|...|.+. ..-+..|.. +.++.
T Consensus 51 aIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 347777766654 88899989999999999776666655433333336999999988664 333444444 34555
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-cccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-SHRL 1246 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~~RL 1246 (2693)
.+.|....+... ..+.....+|++.|+.++...+++..|......+.|+|||..|+.. ..+.+..+..+.. -..+
T Consensus 127 ~~igg~~~~~~~--~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~ 204 (397)
T KOG0327|consen 127 ACIGGTNVRRED--QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVV 204 (397)
T ss_pred eecCcccchhhh--hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhe
Confidence 556644433221 2234456899999999998877888888888999999999998653 3455555555543 2445
Q ss_pred cccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhH
Q 000047 1247 LLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHK 1326 (2693)
Q Consensus 1247 LLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkD 1326 (2693)
++|||=- .|+. .+-+.|+
T Consensus 205 l~SAT~p----~~vl---------------------------------------------------~vt~~f~------- 222 (397)
T KOG0327|consen 205 LLSATMP----SDVL---------------------------------------------------EVTKKFM------- 222 (397)
T ss_pred eecccCc----HHHH---------------------------------------------------HHHHHhc-------
Confidence 6666631 1100 0000000
Q ss_pred HhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhh
Q 000047 1327 VENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIV 1406 (2693)
Q Consensus 1327 VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lv 1406 (2693)
..-..+ .+.-...+ |.- ..+-|.. +
T Consensus 223 ------~~pv~i-~vkk~~lt----------------------------l~g-ikq~~i~-------------------v 247 (397)
T KOG0327|consen 223 ------REPVRI-LVKKDELT----------------------------LEG-IKQFYIN-------------------V 247 (397)
T ss_pred ------cCceEE-Eecchhhh----------------------------hhh-eeeeeee-------------------c
Confidence 000000 00000000 000 0000100 0
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
.-..|+..|+++.. .-...+|||+..+-++.|.+.|..+++....++|.+.+.+|..+++.|+.+.+. +||+|
T Consensus 248 ~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlItt 320 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITT 320 (397)
T ss_pred cccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeec
Confidence 01128888888887 345789999999999999999999999999999999999999999999998887 89999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+..++|||++.++.||+||.|-|...|++|+||++|.|.+ -.+..++++.+
T Consensus 321 dl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 321 DLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred cccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 9999999999999999999999999999999999999954 45556666543
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=2.6e-14 Score=183.39 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=88.4
Q ss_pred EEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHHHhhhhcCC
Q 000047 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPP--EERRRLFKEKIVHQK 1190 (2693)
Q Consensus 1114 LADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~--~eRk~l~ke~i~~~k 1190 (2693)
|...||+|||.+++.++.+.+..+ +.+|||+|. ++..||.+.|+++++ ..+.++++.. .+|.+.+. .+..+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~-~~~~g~ 76 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWR-KVKNGE 76 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHH-HHHcCC
Confidence 566899999999988887776542 348999997 566889999998774 4566676643 34444443 344567
Q ss_pred ccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc--ccchHH------HHHHhhcccccccccccCC
Q 000047 1191 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLN------ADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1191 fdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN--~sSKls------raLk~Lka~~RLLLTGTPL 1253 (2693)
.+|||+|+..+.. ...++++|||||.|...- .....+ .....+.....|++||||.
T Consensus 77 ~~IVVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 77 ILVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred CCEEECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 8999999987743 233579999999998642 222111 1122344567789999994
No 100
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.61 E-value=2e-14 Score=190.60 Aligned_cols=311 Identities=22% Similarity=0.198 Sum_probs=196.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC-CCCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA-PRIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa-PsLk 1167 (2693)
+|++.|..++.-.+. .+.|.|+|..||+|||++|+..|...+... .++++.|||. +|..+-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999865543 278999999999999999987777655443 5679999997 55566788888553 3789
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-cch----HHHHHHhhcc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-SCK----LNADLKHYQS 1242 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-sSK----lsraLk~Lka 1242 (2693)
|..+.|+..... ....+++|+||||+.+-....+........++|||||+|.+... ... ....++.+..
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 999999876443 12368999999999885322222223446799999999999765 211 1111222222
Q ss_pred -cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1243 -SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1243 -~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
-+.++||||- .| ..+|..|.+..... ...+|.-++
T Consensus 180 ~~rivgLSATl--pN------------------~~evA~wL~a~~~~------------------------~~~rp~~l~ 215 (766)
T COG1204 180 LIRIVGLSATL--PN------------------AEEVADWLNAKLVE------------------------SDWRPVPLR 215 (766)
T ss_pred ceEEEEEeeec--CC------------------HHHHHHHhCCcccc------------------------cCCCCcccc
Confidence 4668899996 23 34444444331100 001111111
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
|- .|.. ..++.+. +..+
T Consensus 216 ~~-------v~~~-~~~~~~~-------------------~~~k------------------------------------ 232 (766)
T COG1204 216 RG-------VPYV-GAFLGAD-------------------GKKK------------------------------------ 232 (766)
T ss_pred cC-------Cccc-eEEEEec-------------------Cccc------------------------------------
Confidence 10 0000 0000000 0000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----c----------------------------
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----K---------------------------- 1449 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----r---------------------------- 1449 (2693)
.....+...+..++....+.++.+|||++.+.........|.. .
T Consensus 233 ----~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (766)
T COG1204 233 ----TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEE 308 (766)
T ss_pred ----cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHH
Confidence 0001123344445555567788999999988766555555541 0
Q ss_pred -----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC----------CCCccchh
Q 000047 1450 -----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----------DWNPQVDL 1514 (2693)
Q Consensus 1450 -----GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp----------pWNP~~di 1514 (2693)
-..+..-|.+++.++|+-+-+.|+++.-+ +|++|..+..|+||+ |++|||-|. +-++..++
T Consensus 309 l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~ 384 (766)
T COG1204 309 LAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVL 384 (766)
T ss_pred HHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHh
Confidence 01233456789999999999999988765 899999999999998 566766443 33567789
Q ss_pred hhhhhhcccCCc
Q 000047 1515 QAQARAHRIGQK 1526 (2693)
Q Consensus 1515 QAIGRAHRIGQk 1526 (2693)
|..|||+|.|=.
T Consensus 385 QM~GRAGRPg~d 396 (766)
T COG1204 385 QMAGRAGRPGYD 396 (766)
T ss_pred hccCcCCCCCcC
Confidence 999999999854
No 101
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2e-14 Score=179.82 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-hhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L-~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
-+|+-.|.+++... -...+|||.|..+.+..|.+.| ...++++..+||..++.+|++.+++|+.+... +|++|+
T Consensus 372 ~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw---vLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW---VLICTD 446 (593)
T ss_pred hhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee---EEEehh
Confidence 35888888888765 4578999999999999999999 88999999999999999999999999887643 699999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+.++||||..++.||+||.+-.-..|++|+||++|.|+.-. .|-|++.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 99999999999999999999999999999999999997643 3334444
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.59 E-value=5.2e-13 Score=175.51 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=113.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..+++..|.+.|.++...+.++||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+... +||+|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~---VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD---VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce---EEEEcC
Confidence 45688888888888888999999999999999999999999999999999999999999999999876543 789999
Q ss_pred ccccccCccccCEEEEec-----CCCCccchhhhhhhhcccCCcccEEEEEEEeCCC--HHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFD-----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT--VEEQVRAS 1547 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyD-----ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS--IEEkIler 1547 (2693)
.+++|++++.+++||++| .+-+...|+|++||++|... -.|+.|+...+ +.+.|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~---G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC---CEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 56688899999999999742 23444444433 44445443
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2.1e-13 Score=180.20 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=113.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+.+.++...|..|||||......++|..+|...|+++..|++.....+|+.+.+.|+.+. ++|+|+
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~-----VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA-----VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc-----EEEecc
Confidence 346999999999999999999999999999999999999999999999999999999999999997662 899999
Q ss_pred ccccccCccc--------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQA--------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQa--------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+|+|+|+.= -=+||.-..+-|-..+.|-.||++|-|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999752 23788899999999999999999999988776
Q ss_pred EEEEEEeCCCHHHHHHH
Q 000047 1530 LVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIle 1546 (2693)
..| -|+|..++.
T Consensus 581 ~f~-----lSleD~l~~ 592 (896)
T PRK13104 581 RFY-----LSLEDNLMR 592 (896)
T ss_pred EEE-----EEcCcHHHH
Confidence 666 345555543
No 104
>PRK09694 helicase Cas3; Provisional
Probab=99.57 E-value=1.2e-13 Score=184.92 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHH----HHHHHHH-hCCCCCceEEEe
Q 000047 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDR----GALIDKF-NQQDSPFFIFLL 1484 (2693)
Q Consensus 1413 elLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eER----qeiId~F-N~~dSd~fVfLL 1484 (2693)
.++..++.. ...+++|||||+.++.+..+.++|...+ +.+..+||.+...+| +++++.| +++..+...|||
T Consensus 548 ~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 344444443 3568899999999999999999998765 689999999999999 5678899 433322235799
Q ss_pred eecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1485 SIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1485 STrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
+|.+...|||+ ++|.||....| ...++||+||+||.|.+
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999999999 68999887666 56899999999999874
No 105
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.55 E-value=5.9e-12 Score=166.24 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=108.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..+++..|.+.|..+...+.++||||.....++.|.++|...|+++..+||.++..+|..+++.|+.+.. .+||+|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 4567888888888888899999999999999999999999999999999999999999999999977654 3789999
Q ss_pred ccccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1488 AGGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
.+++|++++.+++||++|. +-++..|+|++||++|- . .-.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999996 45888999999999994 2 3345555553
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=4.2e-13 Score=176.59 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+..+...+..|||||......+.|...|...|+++..|+|.....++..+...|+.+ .++|+|+.
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g-----~VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG-----AVTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc-----eEEEEecc
Confidence 4589999999988888999999999999999999999999999999999998766666555555332 28999999
Q ss_pred cccccCcc---ccC-----EEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQ---AAD-----TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQ---aAD-----tVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|+|+. .+. +||+++.+-|...|.|+.||++|.|..-....|
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 99999994 677 999999999999999999999999987665444
No 107
>COG4889 Predicted helicase [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=180.61 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA-PRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa-PsL 1166 (2693)
.+|||||..++....+-+..+.+|=|.+.+|+|||+++|-+...+.. ..+|.+||. +||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 68999999999999998888999989999999999999988877754 448999997 77777433321110 112
Q ss_pred cEEEEcC-ChHH------------------HHHH---HHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccc
Q 000047 1167 HKIVYCG-PPEE------------------RRRL---FKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224 (2693)
Q Consensus 1167 kVIvy~G-s~~e------------------Rk~l---~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAH 1224 (2693)
+....+. ..-. .+.+ +.......+.-||++||+.+-............||+|||||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 2222222 1100 0111 1122234567899999999976555455666789999999999
Q ss_pred cccccc------chHHHH--HHhhcccccccccccC
Q 000047 1225 RIKNAS------CKLNAD--LKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1225 RIKN~s------SKlsra--Lk~Lka~~RLLLTGTP 1252 (2693)
|-.+.. +...+. -..+++..||-+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 975421 111111 1245678899999999
No 108
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.54 E-value=7e-14 Score=187.01 Aligned_cols=310 Identities=16% Similarity=0.157 Sum_probs=215.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..+|+-|+++|...+. +..+++-..||.||.++....+ .--.+-.|||.|+ +|+.....-+.+. ++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA------~l~~gitvVISPL~SLm~DQv~~L~~~--~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPA------LLLGGVTVVISPLISLMQDQVTHLSKK--GIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccc------cccCCceEEeccHHHHHHHHHHhhhhc--Ccc
Confidence 5789999999985554 8888999999999997653222 1223467999997 6765544445333 233
Q ss_pred EEEEcCCh--HHHHHHHHhhhhcC--CccEEEEcHHHHHhccCCC-c-ccccC---ccEEEEccccccccccc-------
Q 000047 1168 KIVYCGPP--EERRRLFKEKIVHQ--KFNVLLTTYEYLMNKHDRP-K-LSKIQ---WHYIIIDEGHRIKNASC------- 1231 (2693)
Q Consensus 1168 VIvy~Gs~--~eRk~l~ke~i~~~--kfdVVITTYE~Lik~~Dr~-~-L~kik---Wd~VIIDEAHRIKN~sS------- 1231 (2693)
.....+.. .++..+++ .+..+ .++|+..|++.+....... . ..... ..++||||||....+.-
T Consensus 331 a~~L~s~q~~~~~~~i~q-~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQ-KLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred eeeccccccHHHHHHHHH-HHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 33343433 33434433 34445 7899999999997633211 1 11122 58999999999865432
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
++.....++.....|+||||--..--.|+...|++-+|.+|.+. |+.+
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fnR~-------------------------- 457 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FNRP-------------------------- 457 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CCCC--------------------------
Confidence 23333344555667999999988888888888888877754331 2110
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
...+-|..... .....
T Consensus 458 ----------------------NL~yeV~~k~~---------------------~~~~~--------------------- 473 (941)
T KOG0351|consen 458 ----------------------NLKYEVSPKTD---------------------KDALL--------------------- 473 (941)
T ss_pred ----------------------CceEEEEeccC---------------------ccchH---------------------
Confidence 00111111100 00000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
.+.+.+. ....+.-.||||..+..++.+...|...|+....||.++...+|+.+.+.
T Consensus 474 ----------------------~~~~~~~-~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 474 ----------------------DILEESK-LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred ----------------------HHHHHhh-hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHH
Confidence 0111111 12346689999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
|..+... ++++|=|.|.|||-.++..||+|..|-+..-|.|..|||+|.|+-..+..|+
T Consensus 531 w~~~~~~---VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 531 WMSDKIR---VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HhcCCCe---EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 9877643 7999999999999999999999999999999999999999999998877664
No 109
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=1.3e-13 Score=149.69 Aligned_cols=167 Identities=26% Similarity=0.319 Sum_probs=118.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcC-CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ-LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~-lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
..++++||.+++.++.. . .++++..++|+|||..++.++...+.... .+++||++|. .+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 46899999999998875 3 78899999999999988887777665433 3569999995 6668899999998865
Q ss_pred ---CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-cc-chHHHHHHhh
Q 000047 1166 ---IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-AS-CKLNADLKHY 1240 (2693)
Q Consensus 1166 ---LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~s-SKlsraLk~L 1240 (2693)
.....+.+..... .+. ......++|+++||+.+........+...+|++|||||+|.+.+ .. ......+..+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 81 LGLKVVGLYGGDSKRE--QLR-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CCeEEEEEeCCcchHH--HHH-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 3344454443211 111 22334459999999999876655555667889999999999985 33 3333333444
Q ss_pred -cccccccccccCCCCCHHHHHH
Q 000047 1241 -QSSHRLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1241 -ka~~RLLLTGTPLQNnLeELwS 1262 (2693)
...+++++||||..+.-...+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred CccceEEEEecCCchhHHHHHHH
Confidence 5788899999996443333333
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3e-12 Score=169.27 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+.++...+..|||||......+.|..+|...|+++..|+|. ..+|+..|..|..+... ++|+|+.
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNm 487 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEeccc
Confidence 369999999999888899999999999999999999999999999999995 67999999999655444 8999999
Q ss_pred cccccCcccc--------------------------------------CEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1489 GGVGVNLQAA--------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1489 GGeGLNLQaA--------------------------------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+|+|+|+.-. =+||.-..+-|-..+.|..||++|-|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 9999997542 37888899999999999999999999987776
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 568 f~ 569 (830)
T PRK12904 568 FY 569 (830)
T ss_pred EE
Confidence 66
No 111
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.51 E-value=7.8e-13 Score=180.55 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCe---EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGik---ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
....+|||+.....++.+.+.|...++. ++-|+|.++.++|.++++.+ + .+-|||+|+++++||++.++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g---~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S---GRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C---CeeEEEeccHHhhccccCcceEE
Confidence 4578999999999999999999887765 67799999999999887653 2 24589999999999999999999
Q ss_pred EEec---------------CCCCc---cchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1502 IIFD---------------TDWNP---QVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1502 IiyD---------------ppWNP---~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
|.++ ++..| ..+.||.||++|.+ +-.+|+|+++...
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9985 23333 57999999999984 5578899887544
No 112
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=5e-12 Score=168.89 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=203.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPs 1165 (2693)
..--|-|+.+++-+..=...+. .-+||.++|-|||=+|+-.+-... ...+-+.|+||+.+|. |..+.|..-+-+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---MDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 3555679999988876544443 348999999999999874433222 2224489999999985 456666544433
Q ss_pred CcE----EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1166 IHK----IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1166 LkV----Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
+.+ +.-.-+..+.+.+ ...+..+..||||-|+..|.++. .-.+..+|||||=||+.- +.-..|+.++
T Consensus 670 fPV~I~~LSRF~s~kE~~~i-l~~la~G~vDIvIGTHrLL~kdv-----~FkdLGLlIIDEEqRFGV---k~KEkLK~Lr 740 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEI-LKGLAEGKVDIVIGTHRLLSKDV-----KFKDLGLLIIDEEQRFGV---KHKEKLKELR 740 (1139)
T ss_pred CCeeEEEecccCCHHHHHHH-HHHHhcCCccEEEechHhhCCCc-----EEecCCeEEEechhhcCc---cHHHHHHHHh
Confidence 322 2222333444444 35677899999999999997633 223457999999999843 3345566665
Q ss_pred c-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1242 S-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1242 a-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
+ -..|-||||||..+|.= +|. -++.|.
T Consensus 741 ~~VDvLTLSATPIPRTL~M--sm~------------------------------------------GiRdlS-------- 768 (1139)
T COG1197 741 ANVDVLTLSATPIPRTLNM--SLS------------------------------------------GIRDLS-------- 768 (1139)
T ss_pred ccCcEEEeeCCCCcchHHH--HHh------------------------------------------cchhhh--------
Confidence 4 46788999998766531 000 011111
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
+. .-|+....-|.....++..
T Consensus 769 ------vI-~TPP~~R~pV~T~V~~~d~---------------------------------------------------- 789 (1139)
T COG1197 769 ------VI-ATPPEDRLPVKTFVSEYDD---------------------------------------------------- 789 (1139)
T ss_pred ------hc-cCCCCCCcceEEEEecCCh----------------------------------------------------
Confidence 11 1122211111111110000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.++ + .-++.++ ..|..|..-.+..+.+..+...|+.. ..++...||.|+..+-++++..|.+++-+
T Consensus 790 ---~~i----r----eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 790 ---LLI----R----EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred ---HHH----H----HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 011 0 1122222 34667777778888888888888653 56788999999999999999999888777
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+|+||.....|||+++|||+|+-+.+ +--.+..|--||++|-. +.-+.|-|+..
T Consensus 858 ---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 858 ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred ---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 89999999999999999999999987 57888899999999954 44667766664
No 113
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=2.9e-13 Score=163.68 Aligned_cols=326 Identities=16% Similarity=0.218 Sum_probs=214.4
Q ss_pred ccccccccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchH
Q 000047 1074 SIKESVSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1074 ~ikEev~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL 1152 (2693)
.|.++...+|. |.|++.+.-+++ +...+--.-||+|||...+.-+..-+.... ..-..||+.|+.-|
T Consensus 35 aI~kkg~~~pt--------piqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 35 AIHKKGFNTPT--------PIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred HHHHhhcCCCC--------chhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHH
Confidence 34455555554 447777765554 444444566999999887665544333322 22357999998766
Q ss_pred H-H---HHHHHHHHCCCCcEE-EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1153 P-G---WESEINFWAPRIHKI-VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1153 ~-Q---W~eEfeKwaPsLkVI-vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
. | ...++-++. .++.. .|.|+..+.. | .....+.||||+|+..+....-.-.|......|||+||+++|-
T Consensus 103 a~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeq--f--~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQ--F--ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHhcccc-chhhhhhcccchHHHH--H--HHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 3 3 333444444 34444 5555544332 1 2234689999999998865433334555667899999999985
Q ss_pred c--ccchHHHHHHhhcc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHH
Q 000047 1228 N--ASCKLNADLKHYQS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEEN 1304 (2693)
Q Consensus 1228 N--~sSKlsraLk~Lka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ 1304 (2693)
. +..++.+.+.++.. ...+++|||-- +.| . +|.+ .
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp-~~l------v------------~fak--------a--------------- 215 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLP-RDL------V------------DFAK--------A--------------- 215 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCc-hhh------H------------HHHH--------c---------------
Confidence 4 44566666766643 45577777751 111 0 1110 0
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcc
Q 000047 1305 LLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPY 1384 (2693)
Q Consensus 1305 lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPy 1384 (2693)
-+..|.++| -||+..+- ...+++
T Consensus 216 --------Gl~~p~lVR---ldvetkis---------------------------------------e~lk~~------- 238 (529)
T KOG0337|consen 216 --------GLVPPVLVR---LDVETKIS---------------------------------------ELLKVR------- 238 (529)
T ss_pred --------cCCCCceEE---eehhhhcc---------------------------------------hhhhhh-------
Confidence 001111111 01110000 000000
Q ss_pred ccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHH
Q 000047 1385 LSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGD 1464 (2693)
Q Consensus 1385 L~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eE 1464 (2693)
-..++...|..+|..++.+... .++.+||+-....++++...|...|+....+.|+++++-
T Consensus 239 ------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~a 299 (529)
T KOG0337|consen 239 ------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEA 299 (529)
T ss_pred ------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHh
Confidence 0112334577888888876544 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1465 RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1465 RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|..-+.+|+..... +|+.|+++.+|++++--|.||+||.+-.+..+.+|+||+.|.|.+ -..|-||+...
T Consensus 300 Rk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 300 RKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred hhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 99999999877665 899999999999999999999999999999999999999999854 45677777543
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.2e-11 Score=163.60 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=108.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||||......+.|..+|...|+.+..|++.....+|..+...|+.+. ++|+|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 356999999999999999999999999999999999999999999999999999999999999997654 899999
Q ss_pred ccccccCccc-------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1488 AGGVGVNLQA-------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1488 AGGeGLNLQa-------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
.+|+|+|+.= -=+||.-..+-|-..+.|..||++|-|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999752 237899999999999999999999999876655
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 55
No 115
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.45 E-value=1.8e-12 Score=156.43 Aligned_cols=324 Identities=16% Similarity=0.144 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy 1171 (2693)
+.|..++..++. .+....+++.||.||++..-... |+. .+-.+||.|. .|+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 569999988875 56778999999999997653222 221 2346888886 4455555655544211111112
Q ss_pred cCChHHHHHHHHhh-hhcCCccEEEEcHHHHHhccCCCc----ccccCccEEEEccccccccccch---HHHHHHh----
Q 000047 1172 CGPPEERRRLFKEK-IVHQKFNVLLTTYEYLMNKHDRPK----LSKIQWHYIIIDEGHRIKNASCK---LNADLKH---- 1239 (2693)
Q Consensus 1172 ~Gs~~eRk~l~ke~-i~~~kfdVVITTYE~Lik~~Dr~~----L~kikWd~VIIDEAHRIKN~sSK---lsraLk~---- 1239 (2693)
.-+..+|.+++... .......++..|++.......... .......|+||||||..--+..- -|-.|-.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 22345666655332 223456778888876644222111 23345689999999998543321 1122222
Q ss_pred hcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1240 YQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1240 Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
+.....++||||--..--+|+|..|++-.|-. .|..|-.+.. | |.
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVA---------iFkTP~FR~N--------------------L------FY 218 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVA---------IFKTPTFRDN--------------------L------FY 218 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHH---------hccCcchhhh--------------------h------hH
Confidence 23344588999998788889998888776632 1222111000 0 00
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
...|+.+. ..-+..|...|.|-.- . -++....
T Consensus 219 ----------------------------D~~~K~~I--------------~D~~~~LaDF~~~~LG-~--~~~~~~~--- 250 (641)
T KOG0352|consen 219 ----------------------------DNHMKSFI--------------TDCLTVLADFSSSNLG-K--HEKASQN--- 250 (641)
T ss_pred ----------------------------HHHHHHHh--------------hhHhHhHHHHHHHhcC-C--hhhhhcC---
Confidence 00011100 0001111111111000 0 0000000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
-+....--||||..+..++.|.-.|..+|+....+|.+.+..||.++.+.|.+++.+
T Consensus 251 ----------------------~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P- 307 (641)
T KOG0352|consen 251 ----------------------KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP- 307 (641)
T ss_pred ----------------------CCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC-
Confidence 001123469999999999999999999999999999999999999999999998888
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyR 1533 (2693)
+|++|-..|.|+|-++...||++|++-|..-|.|--||++|-|-..-|+.|+
T Consensus 308 --vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 308 --VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred --EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 8999999999999999999999999999999999999999999888888875
No 116
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.45 E-value=4.5e-13 Score=137.41 Aligned_cols=138 Identities=27% Similarity=0.343 Sum_probs=102.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC-CCcEEEEcCChHHHHHHHHhhhhc
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP-RIHKIVYCGPPEERRRLFKEKIVH 1188 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP-sLkVIvy~Gs~~eRk~l~ke~i~~ 1188 (2693)
+++|.+++|+|||.+++.++.++.... ..+.+||+||...+.+ |...+..|.. .+.+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 679999999999999999999887653 3456999999987755 5667777775 45666666654433322 2234
Q ss_pred CCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH---HHHHhhcccccccccccC
Q 000047 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN---ADLKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1189 ~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls---raLk~Lka~~RLLLTGTP 1252 (2693)
...+|+|+||+.+.+......+....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988775554445566899999999999988765443 233345678889999998
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.45 E-value=2e-11 Score=145.52 Aligned_cols=310 Identities=19% Similarity=0.207 Sum_probs=201.6
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
+|+|-++|..+-+-++..+++....|+...+|.|||-+....|.+.+..+ +.+.|..|. .++..-...|..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 58999999999999999999999999999999999998888888776553 447888885 55566667777778777
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhh--ccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHY--QSS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~L--ka~ 1243 (2693)
.+.+.+|....- + ...+||+|-..+.+- +..||+|||||.+-+== .+-.+..+++.- ...
T Consensus 172 ~I~~Lyg~S~~~---f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 172 DIDLLYGDSDSY---F-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred CeeeEecCCchh---c-------cccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 777777654321 1 134555555444441 23589999999998732 222344444432 345
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh-hhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP-FVLRR 1322 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP-FLLRR 1322 (2693)
.+|.|||||-. .+.+... +.-++. .+-||
T Consensus 235 ~~IylTATp~k----------------------~l~r~~~----------------------------~g~~~~~klp~R 264 (441)
T COG4098 235 ATIYLTATPTK----------------------KLERKIL----------------------------KGNLRILKLPAR 264 (441)
T ss_pred ceEEEecCChH----------------------HHHHHhh----------------------------hCCeeEeecchh
Confidence 67999999921 1111000 000000 00011
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
.- .+.||-. ..+++. .+.+.+
T Consensus 265 fH---~~pLpvP--kf~w~~--~~~k~l---------------------------------------------------- 285 (441)
T COG4098 265 FH---GKPLPVP--KFVWIG--NWNKKL---------------------------------------------------- 285 (441)
T ss_pred hc---CCCCCCC--ceEEec--cHHHHh----------------------------------------------------
Confidence 00 0111110 111110 000000
Q ss_pred ChhhhcccHHH-HHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCC-eEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1403 PPIVRLCGKLE-MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQY-RYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1403 ~~Lvr~SgKLe-lLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGi-kylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.-.|+. .|.++|++...++..+|||.....+++.+...|.. ... ....++... ..|.+.+.+|+++...
T Consensus 286 -----~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~- 357 (441)
T COG4098 286 -----QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT- 357 (441)
T ss_pred -----hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE-
Confidence 001222 57788888888999999999999999999999842 222 224444443 4799999999988765
Q ss_pred eEEEeeecccccccCccccCEEEEecCC--CCccchhhhhhhhcccCCcccEEEEEEEe
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTD--WNPQVDLQAQARAHRIGQKRDVLVLRFET 1536 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDpp--WNP~~diQAIGRAHRIGQkKeV~VyRLIT 1536 (2693)
+||+|..+.+|+.++..|+.|+=--. ++-...+|--||++|--..-.-.|+.|-.
T Consensus 358 --lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 358 --LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred --EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 89999999999999999999886555 88899999999999965443334444433
No 118
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=1.2e-13 Score=134.21 Aligned_cols=78 Identities=31% Similarity=0.546 Sum_probs=74.3
Q ss_pred HHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1444 DYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1444 d~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
.+|+..|+++..++|.++.++|+++++.|+.+... +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 47889999999999999999999999999988764 899999999999999999999999999999999999999998
Q ss_pred C
Q 000047 1524 G 1524 (2693)
Q Consensus 1524 G 1524 (2693)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.44 E-value=2.7e-12 Score=175.87 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=88.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
....||||+.....++.+.+.|...+ +.++-|+|.++.++|.++++.+ . .+-|||+|+++.+||++.++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~--~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S--GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C--CceEEEeccHHHhccccCCeeEE
Confidence 35689999999999999999998764 4588899999999999885544 2 13479999999999999999999
Q ss_pred EEecCC----C--------------CccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1502 IIFDTD----W--------------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1502 IiyDpp----W--------------NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
|.++.. | +-..+.||.||++|.| +-.+|+|+++...
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 998843 2 3357899999999998 5578999987544
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.2e-11 Score=161.45 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.+.+..+...+..|||||.+....+.|..+|...|+.+..|++ ...+|+..|..|..... .++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 35999999999998889999999999999999999999999999999997 67799999999965444 38999999
Q ss_pred cccccCccccC--------EEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1489 GGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1489 GGeGLNLQaAD--------tVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|..-....| -|.|+.++.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff-----vSleD~Lmr 716 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY-----VSLEDELMR 716 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE-----echhHHHHH
Confidence 99999998433 448999999999999999999999987665444 344555543
No 121
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.40 E-value=1.7e-11 Score=145.68 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=213.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
.++||.|+.+++..+. +...+|...+|-||++..-.. .--..|-.|||||. +++......++...-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlp------al~adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLP------ALCADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhh------HHhcCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3689999999988776 778899999999999754322 22235667999997 777777777776654433
Q ss_pred EEEEcCChHHHHHHHHh-hhhcCCccEEEEcHHHHHhccC-----CCcccccCccEEEEcccccccccc------chHHH
Q 000047 1168 KIVYCGPPEERRRLFKE-KIVHQKFNVLLTTYEYLMNKHD-----RPKLSKIQWHYIIIDEGHRIKNAS------CKLNA 1235 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke-~i~~~kfdVVITTYE~Lik~~D-----r~~L~kikWd~VIIDEAHRIKN~s------SKlsr 1235 (2693)
.+--..+.++.++.-.. ......|.++..|++.+.+... ...|..-.|.+|-|||.|...-+. .+..-
T Consensus 163 ~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 163 MLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred hccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 33333334433332211 1234679999999998854210 113445568999999999975432 23333
Q ss_pred HH-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DL-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aL-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.| +.|+....|+||||...+-+.|...+|.+- ..-.|..-|++|-
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~n---------------------------- 288 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRPN---------------------------- 288 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCCC----------------------------
Confidence 33 467888889999999888888776655321 0112222222211
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
....+..-+-+ .++
T Consensus 289 -------------------l~yev~qkp~n---------------------------------------------~dd-- 302 (695)
T KOG0353|consen 289 -------------------LKYEVRQKPGN---------------------------------------------EDD-- 302 (695)
T ss_pred -------------------ceeEeeeCCCC---------------------------------------------hHH--
Confidence 00000000000 000
Q ss_pred ccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
-.+-+.+++.. .-.|..-||||-...-.+.+...|...|+..-.+|..+.+++|.-+-..|-.
T Consensus 303 ----------------~~edi~k~i~~-~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a 365 (695)
T KOG0353|consen 303 ----------------CIEDIAKLIKG-DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA 365 (695)
T ss_pred ----------------HHHHHHHHhcc-ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc
Confidence 01111222221 1236788999999999999999999999999999999999999999888876
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhh---------------------------------------
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQ--------------------------------------- 1515 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQ--------------------------------------- 1515 (2693)
+... ++++|-|.|.|||-++...||+-.++.+...|.|
T Consensus 366 ~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffav 442 (695)
T KOG0353|consen 366 GEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAV 442 (695)
T ss_pred cceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeee
Confidence 6544 6889999999999999999999999999999999
Q ss_pred ----hhhhhcccCCcccEEEEEE
Q 000047 1516 ----AQARAHRIGQKRDVLVLRF 1534 (2693)
Q Consensus 1516 ----AIGRAHRIGQkKeV~VyRL 1534 (2693)
--||++|-|++-+|..|+=
T Consensus 443 fsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 443 FSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred ecchhccccccCCCcccEEEEec
Confidence 5689999999999776653
No 122
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.40 E-value=7.3e-12 Score=155.40 Aligned_cols=316 Identities=19% Similarity=0.169 Sum_probs=205.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHH-HHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQV-IALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAP-- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQA-IALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP-- 1164 (2693)
..|.|-|..+|..-+ -.+.|-++...|++|||+++ +|-|..++. ..+.+|.+||.-.|.| -.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l~---~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLLS---GGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHHh---CCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 479999999887543 24777888999999999876 233444443 3456999999877755 5677865553
Q ss_pred CCcEEEEcCChHHHHHHH-HhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc--ccchHH---HHHH
Q 000047 1165 RIHKIVYCGPPEERRRLF-KEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN--ASCKLN---ADLK 1238 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~-ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN--~sSKls---raLk 1238 (2693)
.+++-+-.|....+.+-- -......+.||+|-||+-+--.+.. --..-+...|||||.|.+.. ....+- ..|+
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-CCcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 355556666544332110 0012245789999999866321111 11223568899999999976 233332 3333
Q ss_pred hh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 HY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 ~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
.+ .....|.||||- .|+.||..-|..-. +
T Consensus 368 ~l~~~AQ~i~LSATV--gNp~elA~~l~a~l-----------------V------------------------------- 397 (830)
T COG1202 368 YLFPGAQFIYLSATV--GNPEELAKKLGAKL-----------------V------------------------------- 397 (830)
T ss_pred HhCCCCeEEEEEeec--CChHHHHHHhCCee-----------------E-------------------------------
Confidence 33 346678899996 55566554332100 0
Q ss_pred hhhhhhHhHHhhcCcc-ceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1318 FVLRRLKHKVENELPE-KIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~-KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.....|- ...+++.|.-...
T Consensus 398 ---------~y~~RPVplErHlvf~~~e~e-------------------------------------------------- 418 (830)
T COG1202 398 ---------LYDERPVPLERHLVFARNESE-------------------------------------------------- 418 (830)
T ss_pred ---------eecCCCCChhHeeeeecCchH--------------------------------------------------
Confidence 0111121 1223333331111
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHh------hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHH
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKL------KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kL------katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId 1470 (2693)
|+.++.++.+.- +.-....|||+..+.-+..|.++|..+|++..-+|++++..+|..+-.
T Consensus 419 --------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 419 --------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred --------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHH
Confidence 222222222211 111357899999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEE----ecCCC-CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDTDW-NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yDppW-NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.|.+..-. .+++|.|++-|+|+++ +.||| +...| +|..+.|..|||+|.+=...-.||-++-.+
T Consensus 485 ~F~~q~l~---~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 485 AFAAQELA---AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHhcCCcc---eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99877766 7899999999999985 44544 34445 999999999999999877666677666543
No 123
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.36 E-value=3.4e-11 Score=157.40 Aligned_cols=324 Identities=18% Similarity=0.132 Sum_probs=186.7
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-------CCCCEEEEecCchH-HHHHHHHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-------DRGPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-------~~gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
|--.|-+++. ..|+.+.|.|++.+||+|||..|+..|..++..+. +.-.++.|+|...| ..-.+.+.+-
T Consensus 111 fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 111 FNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 3333444443 34778999999999999999999988888877522 22247999996444 3333333222
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc----cCCCcccccCccEEEEccccccccccch----
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK----HDRPKLSKIQWHYIIIDEGHRIKNASCK---- 1232 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~----~Dr~~L~kikWd~VIIDEAHRIKN~sSK---- 1232 (2693)
+. ++.|.-+.|+...-+ .+ ....+|+|||++.+--. .....| .-...+|||||.|-+......
T Consensus 188 l~~~gi~v~ELTGD~ql~~----te--i~~tqiiVTTPEKwDvvTRk~~~d~~l-~~~V~LviIDEVHlLhd~RGpvlEt 260 (1230)
T KOG0952|consen 188 LAPLGISVRELTGDTQLTK----TE--IADTQIIVTTPEKWDVVTRKSVGDSAL-FSLVRLVIIDEVHLLHDDRGPVLET 260 (1230)
T ss_pred cccccceEEEecCcchhhH----HH--HHhcCEEEecccceeeeeeeeccchhh-hhheeeEEeeeehhhcCcccchHHH
Confidence 22 588899999875432 22 24689999999977211 110111 123579999999999875433
Q ss_pred -HHHHHHhh----cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHH
Q 000047 1233 -LNADLKHY----QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLI 1307 (2693)
Q Consensus 1233 -lsraLk~L----ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lli 1307 (2693)
..+.++.. ..-+.++||||- -|..|+. .||.-..+.....|+..|.
T Consensus 261 iVaRtlr~vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yR------------------------ 311 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYR------------------------ 311 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccc------------------------
Confidence 33333322 234568999995 2344433 3333322222223332221
Q ss_pred HHHHHHHhhhhhhhhhHhHHhhcCccceeEeeecccc--HHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1308 INRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEAS--AYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1308 I~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLS--a~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
|.-|+ ..++-+... ..|...
T Consensus 312 ---------PvpL~--------------~~~iG~k~~~~~~~~~~----------------------------------- 333 (1230)
T KOG0952|consen 312 ---------PVPLT--------------QGFIGIKGKKNRQQKKN----------------------------------- 333 (1230)
T ss_pred ---------cccee--------------eeEEeeecccchhhhhh-----------------------------------
Confidence 11111 011100000 000000
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----cCCe---------
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYR--------- 1452 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----rGik--------- 1452 (2693)
++ ..+++.+. ++...||.|+||++.+...-.....|.. .|+.
T Consensus 334 -------~d--------------~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~ 388 (1230)
T KOG0952|consen 334 -------ID--------------EVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRN 388 (1230)
T ss_pred -------HH--------------HHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhh
Confidence 00 01222222 2345688899998877654444444432 2221
Q ss_pred ----------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccc----------
Q 000047 1453 ----------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV---------- 1512 (2693)
Q Consensus 1453 ----------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~---------- 1512 (2693)
+..-|.++...+|+-+-+.|..+.-+ +|++|..+..|+||++--.||-=..-|+...
T Consensus 389 k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilD 465 (1230)
T KOG0952|consen 389 KQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILD 465 (1230)
T ss_pred HHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHH
Confidence 22345677888999999999877655 7999999999999997655554445566544
Q ss_pred hhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1513 DLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1513 diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
.+|-+|||+|..=.+.-..+-+.+.+.
T Consensus 466 VlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 466 VLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHHHhccCCCCCCCCceEEEEecccH
Confidence 589999999987666544444444443
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=3.1e-10 Score=150.61 Aligned_cols=128 Identities=12% Similarity=0.165 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+-+.++.+.|..|||-|.....-+.|..+|...|+.+..|+-... +.-.++|.. ++... .+.|+|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeecc
Confidence 47999999999999999999999999999999999999999999999987533 223345554 34332 48999999
Q ss_pred cccccCcccc--------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1489 GGVGVNLQAA--------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1489 GGeGLNLQaA--------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
+|+|.|+.-. =+||.-..+-|...+.|..||++|-|..-....| -|+|..++.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-----lSlEDdL~~ 686 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-----LSFEDRLMR 686 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-----EEcchHHHH
Confidence 9999997543 3789999999999999999999999988766555 244555543
No 125
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.31 E-value=3.8e-12 Score=122.01 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhh
Q 000047 1441 VMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARA 1520 (2693)
Q Consensus 1441 ILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRA 1520 (2693)
.|.++|...++.+..++|.++.++|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 5678888889999999999999999999999987654 5899999999999999999999999999999999999999
Q ss_pred cccC
Q 000047 1521 HRIG 1524 (2693)
Q Consensus 1521 HRIG 1524 (2693)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 126
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.31 E-value=1.4e-11 Score=134.14 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCC--CcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPR--IHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPs--LkVI 1169 (2693)
|+|.+++..+. ++.+.|+..++|+|||..++..+...+... ....+||++|.. ++.+-..++.+++.. +++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999998776 367799999999999999987776655544 334699999974 567788889888854 6777
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhh---cccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHY---QSSH 1244 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~L---ka~~ 1244 (2693)
.++|........ ......+.+|+|+|++.|........+...+.++|||||+|.+-.. .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777755422111 1112457999999999998755432223345899999999999763 22233333433 2356
Q ss_pred cccccccCCCCCHH
Q 000047 1245 RLLLTGTPLQNNLE 1258 (2693)
Q Consensus 1245 RLLLTGTPLQNnLe 1258 (2693)
.++|||||- .+++
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 799999996 4444
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.30 E-value=2.4e-11 Score=137.11 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=109.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc--CCCCCEEEEecC-chHHHHHHHHHHHCC--
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK--NDRGPFLVVVPS-SVLPGWESEINFWAP-- 1164 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k--~~~gP~LIVVPt-SLL~QW~eEfeKwaP-- 1164 (2693)
.|++||.+++..+.. +.+.|++.++|.|||+.++..+...+... .....+|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999987775 78899999999999998665554444433 233458999997 556889998888864
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-h-HHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-K-LNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-K-lsraLk~Lk- 1241 (2693)
++.+..+.|........ .....+.+|+|+|.+.+........+....++++||||+|.+.+... . +...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 56677777765543322 11225789999999887664444444455689999999999875431 1 222233443
Q ss_pred ccccccccccCC
Q 000047 1242 SSHRLLLTGTPL 1253 (2693)
Q Consensus 1242 a~~RLLLTGTPL 1253 (2693)
....+++|||+-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 355789999995
No 128
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.29 E-value=1.7e-10 Score=154.37 Aligned_cols=353 Identities=17% Similarity=0.119 Sum_probs=206.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchH-HHHHHHHHHHCCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVL-PGWESEINFWAPRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL-~QW~eEfeKwaPsL 1166 (2693)
-..+++|..++++.......+..++|-++||.|||..++.+..+.+..+ .....++.|.|..++ .+-.+.+..|+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 4568999999999988777666789999999999999998888887763 344457888887665 55777788777544
Q ss_pred cEEEE--cCChHHHHHHHHhh-----------hhcCCccEEEE-cHHHHHhccC--C-CcccccCccEEEEccccccccc
Q 000047 1167 HKIVY--CGPPEERRRLFKEK-----------IVHQKFNVLLT-TYEYLMNKHD--R-PKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1167 kVIvy--~Gs~~eRk~l~ke~-----------i~~~kfdVVIT-TYE~Lik~~D--r-~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
.+... ++.....-...... ....-+.+.++ +.+.+..... . ..+..+-..++|+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 43333 44433221111100 00011222222 2222221000 0 0133345678999999998655
Q ss_pred -cchHHH-HHHhh--cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHH
Q 000047 1230 -SCKLNA-DLKHY--QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENL 1305 (2693)
Q Consensus 1230 -sSKlsr-aLk~L--ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~l 1305 (2693)
...... .+..+ .....|++|||+- ..|.+.+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~---------------------- 389 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLK---------------------- 389 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHH----------------------
Confidence 222222 22222 2457799999981 11111111
Q ss_pred HHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1306 LIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1306 liI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
..+.... .+. ...+ .| ..++.+.+
T Consensus 390 -------~~~~~~~------~~~--~~~~-----~~------------------------------------~~~~e~~~ 413 (733)
T COG1203 390 -------KALGKGR------EVV--ENAK-----FC------------------------------------PKEDEPGL 413 (733)
T ss_pred -------HHHhccc------cee--cccc-----cc------------------------------------cccccccc
Confidence 0000000 000 0000 00 00111111
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR 1465 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER 1465 (2693)
.......+.. ... ..+...+..-...+.+|+|-++.+..+..+...|+..+.+++.||+.....+|
T Consensus 414 ~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR 479 (733)
T COG1203 414 KRKERVDVED-------------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDR 479 (733)
T ss_pred ccccchhhhh-------------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhH
Confidence 1100000000 000 12222333335568999999999999999999999888889999999999999
Q ss_pred HHHHHHHhCC-CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccC--CcccEEEEEEEeCCCHHH
Q 000047 1466 GALIDKFNQQ-DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIG--QKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1466 qeiId~FN~~-dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIG--QkKeV~VyRLIT~gSIEE 1542 (2693)
.+.++.+..- ..+-..++|+|.+...|||+. .|.+|- | .--....+||.||++|-| ....+.||...-......
T Consensus 480 ~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-e-~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~ 556 (733)
T COG1203 480 EEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-E-LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLK 556 (733)
T ss_pred HHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-c-CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchh
Confidence 9988865421 111124899999999999976 666553 2 223456899999999999 445588887777777777
Q ss_pred HHHHHHHHHHHHHhhh
Q 000047 1543 QVRASAEHKLGVANQS 1558 (2693)
Q Consensus 1543 kIleraekKl~Li~kV 1558 (2693)
+.++....+.......
T Consensus 557 ~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 557 YSYEKLEKKLKSLEEL 572 (733)
T ss_pred hhhhcchhhhcccccc
Confidence 7777776665544433
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.23 E-value=2.6e-09 Score=145.41 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=65.9
Q ss_pred HHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1414 MLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1414 lLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+.+.|.++ ...+.++|||+.....++.+.+.|.. .++. .+..+.. ..|.+++++|+.++.. +|++|..
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 444444444 34567999999999999999999864 3444 3333333 5799999999876543 7889999
Q ss_pred cccccCccc--cCEEEEecCCC
Q 000047 1489 GGVGVNLQA--ADTVIIFDTDW 1508 (2693)
Q Consensus 1489 GGeGLNLQa--ADtVIiyDppW 1508 (2693)
..+|||+.. ...|||.-.|+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 999999987 56788888776
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=6.9e-09 Score=135.55 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||.|.....-++|..+|...|+++..|+.... ++-.++|.+- +... .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CCCC--cEEEEec
Confidence 346899999999889999999999999999999999999999999999987644 3335566553 3332 4899999
Q ss_pred ccccccCcccc---------------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1488 AGGVGVNLQAA---------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1488 AGGeGLNLQaA---------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
.+|+|.|+.-. =+||....+-|-..+.|..||++|-|..-....| -|+|..++.+-
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-----lSleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-----VSLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-----EEcchhHHHhc
Confidence 99999997633 3889999999999999999999999988776666 34566555443
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.19 E-value=6.1e-09 Score=130.13 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
-++-|..-+.+..+.+.||||-+-..+|++-|.+||...|+++.++|..++.-+|.++|...+.+.-+ +|+....+-
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLR 507 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLR 507 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhh
Confidence 33444444444466789999999999999999999999999999999999999999999999988766 899999999
Q ss_pred cccCccccCEEEEecCC-----CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1491 VGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDpp-----WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
+||||+.+..|.|+|-+ -+-...+|-||||-|--..+. ..|-=...+++++.|-+..+
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gkv-IlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKV-ILYADKITDSMQKAIDETER 570 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeE-EEEchhhhHHHHHHHHHHHH
Confidence 99999999999999987 467889999999999654443 33433333566666655543
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=8.6e-09 Score=137.20 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+..+.+.|..|||-+.....-+.|..+|...|+++-.|+-... ++-.++|.+ ++... .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cEEEecc
Confidence 346999999999999999999999999999999999999999999988877533 333445553 44433 4899999
Q ss_pred ccccccCccc-------------------------------------cCEEEEecCCCCccchhhhhhhhcccCCcccEE
Q 000047 1488 AGGVGVNLQA-------------------------------------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1488 AGGeGLNLQa-------------------------------------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
.+|+|.|+.= -=+||.-..+-|-..+.|..||++|-|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 9999999742 237899999999999999999999999887666
Q ss_pred EE
Q 000047 1531 VL 1532 (2693)
Q Consensus 1531 Vy 1532 (2693)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 55
No 133
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=2.6e-10 Score=131.50 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHH---HHCCCCcE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEIN---FWAPRIHK 1168 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfe---KwaPsLkV 1168 (2693)
+.|.+.+...+- +...+...-.|+|||..........++--...-.+||+|-+..+ .|...|+. ++.|++++
T Consensus 67 evqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 67 EVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred HhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 457787766553 55667778899999977643333333322223347999988665 56666655 56799999
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.+|.|.....+. +.....-.+||+.|++++........|...+..+.|+|||++|.
T Consensus 143 aVFfGG~~Ikkd---ee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKD---EELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceecccc---HHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 999887654321 12223478999999999976555556777778999999999874
No 134
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.03 E-value=1.1e-09 Score=132.57 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=88.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
-.|.||||....-+|-|+.+|+.+| |..+.|+|..+++||.+-++.|...+-. |||+|+++.+|||++..-++|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4699999999999999999998764 6788999999999999999999877665 999999999999999999999
Q ss_pred EecCCCCccchhhhhhhhcccC
Q 000047 1503 IFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1503 iyDppWNP~~diQAIGRAHRIG 1524 (2693)
+..+|-.-..|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999988853
No 135
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.00 E-value=9.5e-08 Score=124.87 Aligned_cols=366 Identities=17% Similarity=0.139 Sum_probs=201.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaPsL 1166 (2693)
...|-.||+++|..|.. +...++|.-|-.|||++|=..|+ +... . ..+.+.-.|-..|.| =.++|+..|.+.
T Consensus 295 pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAia-laq~-h-~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIA-LAQK-H-MTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHH-HHHh-h-ccceEecchhhhhccchHHHHHHhcccc
Confidence 36788999999976654 88889999999999999854443 2222 2 234688888777755 567888777665
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-hHHHHHHhhccc--
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQSS-- 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~-- 1243 (2693)
. +..|+.. ......++|+|-+.|+..+.+..=...+..+||+||.|++-+... -.|..+--+-.+
T Consensus 368 g--LlTGDvq----------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 368 G--LLTGDVQ----------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred c--eeeccee----------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 5 5556432 235678999999999876654433333467899999999966332 233333322233
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
..|+||||- .+..+|..|+++--...-. ++-
T Consensus 436 ~~IlLSATV--------------------PN~~EFA~WIGRtK~K~Iy---------------------------ViS-- 466 (1248)
T KOG0947|consen 436 NFILLSATV--------------------PNTLEFADWIGRTKQKTIY---------------------------VIS-- 466 (1248)
T ss_pred eEEEEeccC--------------------CChHHHHHHhhhccCceEE---------------------------EEe--
Confidence 348999995 2345788898652111000 000
Q ss_pred HhHHhhcCccceeEeeeccccHH------HHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh-hhhcc
Q 000047 1324 KHKVENELPEKIERLVRCEASAY------QKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE-EVDTL 1396 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~------Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E-Eid~l 1396 (2693)
-...|-..|+.+++.-+-+ -..+++.+........ ...+..... -+.-+-...... ..+..
T Consensus 467 ----T~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-~~ak~~~~~-------~~~~~~~rgs~~~ggk~~ 534 (1248)
T KOG0947|consen 467 ----TSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-KEAKFVDVE-------KSDARGGRGSQKRGGKTN 534 (1248)
T ss_pred ----cCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc-ccccccccc-------cccccccccccccCCcCC
Confidence 0123445667776652111 1112222221111110 000000000 000000000000 00000
Q ss_pred CCCCC--CChhhhcccHHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHhhcCC----------------------
Q 000047 1397 IPKHY--LPPIVRLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQY---------------------- 1451 (2693)
Q Consensus 1397 i~~~~--l~~Lvr~SgKLelLdeLL~kLkat-GhKVLIFSQft~tLDILed~L~~rGi---------------------- 1451 (2693)
....+ ....-..-.|-.....+|..+... --.+||||-.+.-+|.-.++|...++
T Consensus 535 ~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~ 614 (1248)
T KOG0947|consen 535 YHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKG 614 (1248)
T ss_pred CCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcCh
Confidence 00000 000000011111234444444332 35789999888888887777754332
Q ss_pred -----------------eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC--------
Q 000047 1452 -----------------RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT-------- 1506 (2693)
Q Consensus 1452 -----------------kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp-------- 1506 (2693)
.+...||+.=+--++-+--.|..+ +.-+|++|.....|+|++ |.+|||-..
T Consensus 615 ~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG---lVKVLFATETFAMGVNMP-ARtvVF~Sl~KhDG~ef 690 (1248)
T KOG0947|consen 615 EDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG---LVKVLFATETFAMGVNMP-ARTVVFSSLRKHDGNEF 690 (1248)
T ss_pred hhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC---ceEEEeehhhhhhhcCCC-ceeEEeeehhhccCcce
Confidence 123345554443334344467555 344899999999999997 566666443
Q ss_pred -CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1507 -DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1507 -pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
.-+|..|.|..|||+|-|-...-+|+-++..
T Consensus 691 R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 691 RELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred eecCChhHHhhhccccccccCcCceEEEEecC
Confidence 4689999999999999998777666655443
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=8.5e-08 Score=126.99 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-HHHHHHhCCCCCceEEEeee
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG-ALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq-eiId~FN~~dSd~fVfLLST 1486 (2693)
...|+.++.+-+.++.+.|..|||.|......+.|..+|...|+.+..|+.... +|+ .+|. +++... .+.|+|
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~~G--aVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQKG--AITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCCCC--eEEEec
Confidence 347999999999988899999999999999999999999999999999988533 444 3444 344333 489999
Q ss_pred cccccccCccccC--------EEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1487 RAGGVGVNLQAAD--------TVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1487 rAGGeGLNLQaAD--------tVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
..+|+|.|+.-.. +||....+-|-..+.|..||++|-|..-..+.|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999987544 999999999999999999999999988766655
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.94 E-value=1.2e-07 Score=125.53 Aligned_cols=321 Identities=21% Similarity=0.310 Sum_probs=178.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP-- 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP-- 1164 (2693)
|..+.-+|+- |+..+..+.--.|+ .+||+|||.-.+....|+...+ +.++||+|+.+| .|-.+.|.+++.
T Consensus 80 G~~~ws~QR~---WakR~~rg~SFaii-APTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRV---WAKRLVRGKSFAII-APTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHH---HHHHHHcCCceEEE-cCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4577788887 77666555444555 5699999976655555554332 458999998665 777888888873
Q ss_pred ---CCcEEEEcCCh-HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 ---RIHKIVYCGPP-EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~-~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
...++ ||+.- ...++-..+.+..++|||+|||-+++.+.. ..|.+.+||+|+||.++-+.-.. +
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~--e~L~~~kFdfifVDDVDA~Lkas-k-------- 220 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRF--EELSKLKFDFIFVDDVDAILKAS-K-------- 220 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH--HHhcccCCCEEEEccHHHHHhcc-c--------
Confidence 33344 88873 222234456788899999999999999854 46888999999999998763222 1
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
+..+.|.|.|=+ +..+..-|.++.+- ..+. . .....++.+.++-.-.
T Consensus 221 NvDriL~LlGf~-eE~i~~a~~~~~lr------------~~~~-----------------~---~~~~~~~~e~~~~~e~ 267 (1187)
T COG1110 221 NVDRLLRLLGFS-EEVIESAYELIKLR------------RKLY-----------------G---EKRAERVREELREVER 267 (1187)
T ss_pred cHHHHHHHcCCC-HHHHHHHHHHHHHH------------HHhh-----------------h---hhhHHHHHHHHHHHHH
Confidence 112223344433 00011111211110 0000 0 0001111111111100
Q ss_pred hhhHhHHhhcCccceeEeeeccccH----HHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa----~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
+|.+.. .+.-.++....+. ....+|+.+. +. . +-.....||.+.. -|.
T Consensus 268 ~~~~~r------~k~g~LvvsSATg~~rg~R~~LfReLl---gF-e------vG~~~~~LRNIvD-~y~----------- 319 (1187)
T COG1110 268 EREKKR------RKLGILVVSSATGKPRGSRLKLFRELL---GF-E------VGSGGEGLRNIVD-IYV----------- 319 (1187)
T ss_pred HHHHhc------cCCceEEEeeccCCCCCchHHHHHHHh---CC-c------cCccchhhhheee-eec-----------
Confidence 000000 0111111111110 1122333221 00 0 0001112222211 010
Q ss_pred CCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcc---hHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1397 IPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTM---TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1397 i~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQf---t~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.+.-.+.+.++++++ |.=.|||.+. .+.++.|.++|+..|++...++. ...+.++.|.
T Consensus 320 -----------~~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~ 380 (1187)
T COG1110 320 -----------ESESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFE 380 (1187)
T ss_pred -----------cCccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhc
Confidence 112345556666655 5568999998 88999999999999999988876 3367899998
Q ss_pred CCCCCceEEEee-ecccccccCccc-cCEEEEecCC
Q 000047 1474 QQDSPFFIFLLS-IRAGGVGVNLQA-ADTVIIFDTD 1507 (2693)
Q Consensus 1474 ~~dSd~fVfLLS-TrAGGeGLNLQa-ADtVIiyDpp 1507 (2693)
.++-++-|=+.| ..++=+||||+. +.++|||..|
T Consensus 381 ~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 381 EGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 887763221211 345568999975 8999999988
No 138
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.94 E-value=8.4e-09 Score=125.35 Aligned_cols=206 Identities=20% Similarity=0.255 Sum_probs=123.4
Q ss_pred eeEeeeccccHHHHHHHHHHHHHh-----hccCCC-------------CCcchhHHHHHHHHhhCCccccchhhhhhhcc
Q 000047 1335 IERLVRCEASAYQKLLMKRVEENL-----GSIGNS-------------KGRSVHNSVMELRNICNHPYLSQLHAEEVDTL 1396 (2693)
Q Consensus 1335 iE~vV~ceLSa~Qk~LYk~Lee~l-----~si~~s-------------k~rslln~LmqLRKICnHPyL~~~~~EEid~l 1396 (2693)
.++.+...|+.+|+.+|+.+.... ...... ....+...+.+|+.+|+||+|.- +-.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llv------dH~ 77 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLV------DHY 77 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--------TT
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccc------ccc
Confidence 367788999999999999874321 111111 11334556778999999999842 222
Q ss_pred CCCCC-----CChhhhcccHHHHHHHHHHHh-----hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Q 000047 1397 IPKHY-----LPPIVRLCGKLEMLDRLLPKL-----KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1397 i~~~~-----l~~Lvr~SgKLelLdeLL~kL-----katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERq 1466 (2693)
++... ...+...|+||.+|.++|..+ ...+.++||.++..+++|+||.+|..+++.|.|++|..-.++..
T Consensus 78 mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~ 157 (297)
T PF11496_consen 78 MPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKH 157 (297)
T ss_dssp --S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S--
T ss_pred CccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccc
Confidence 22222 234678899999999999999 77788999999999999999999999999999999976554433
Q ss_pred HHH------------HHH-hCCCCCceEEEeeecccccc----cCccccCEEEEecCCCCccchhhhhhhh-cccCCccc
Q 000047 1467 ALI------------DKF-NQQDSPFFIFLLSIRAGGVG----VNLQAADTVIIFDTDWNPQVDLQAQARA-HRIGQKRD 1528 (2693)
Q Consensus 1467 eiI------------d~F-N~~dSd~fVfLLSTrAGGeG----LNLQaADtVIiyDppWNP~~diQAIGRA-HRIGQkKe 1528 (2693)
..- ... ..+...++|+|++++-.... ++-..+|.||-||+.+++....-..-|. +|-+ +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~ 235 (297)
T PF11496_consen 158 KVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RL 235 (297)
T ss_dssp -S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S
T ss_pred cCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CC
Confidence 322 111 12334567888887755442 3334689999999999988754444444 3433 78
Q ss_pred EEEEEEEeCCCHHHHHHHHH
Q 000047 1529 VLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1529 V~VyRLIT~gSIEEkIlera 1548 (2693)
+-|+|||..+|+|-.++..-
T Consensus 236 ~PiirLv~~nSiEHi~L~~~ 255 (297)
T PF11496_consen 236 CPIIRLVPSNSIEHIELCFP 255 (297)
T ss_dssp --EEEEEETTSHHHHHHHHT
T ss_pred CcEEEEeeCCCHHHHHHHcc
Confidence 99999999999998776543
No 139
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.94 E-value=2.1e-08 Score=133.15 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=105.1
Q ss_pred CCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--------CCCEEEEecC-chH
Q 000047 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--------RGPFLVVVPS-SVL 1152 (2693)
Q Consensus 1082 qP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--------~gP~LIVVPt-SLL 1152 (2693)
+|..+....|.+-|-......+ ....|.+||.++|.|||..|+.-|..-+..+.. ...+..|+|. +|+
T Consensus 301 q~aF~g~~sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 301 QPAFFGKQSLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred hhhcccchhhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 3444433455555655443322 245678999999999999987666554433221 1236788995 677
Q ss_pred HHHHHHHHHHCCCC--cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH---hc-cCCCcccccCccEEEEcccccc
Q 000047 1153 PGWESEINFWAPRI--HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM---NK-HDRPKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1153 ~QW~eEfeKwaPsL--kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li---k~-~Dr~~L~kikWd~VIIDEAHRI 1226 (2693)
..|...|.+|.-.+ .|.-..|+....... .....|+++|++..- +. .|+.. ..-++++||||.|-+
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~q------ieeTqVIV~TPEK~DiITRk~gdraY--~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQ------IEETQVIVTTPEKWDIITRKSGDRAY--EQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhh------hhcceeEEeccchhhhhhcccCchhH--HHHHHHHhhhhhhhc
Confidence 77999999997654 455555554322221 245689999998661 11 11111 113578999999999
Q ss_pred c-cccchHH----HHHHhh----cccccccccccCCCCCHHHHHHHhhhccCCCC
Q 000047 1227 K-NASCKLN----ADLKHY----QSSHRLLLTGTPLQNNLEELWALLNFLLPNIF 1272 (2693)
Q Consensus 1227 K-N~sSKls----raLk~L----ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF 1272 (2693)
- +.+..+- +.+++. ...+.++||||- -|..|.-+.|.--.+++|
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 3 3444442 222222 134558999996 356666665543335544
No 140
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.92 E-value=2.1e-08 Score=135.09 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=110.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
.++.|-++|++++.-+. .+.+.+++..||.|||+++-..+.+-+..+ .+ ++...|...+ .|=.++|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~--qr-viYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG--QR-VIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC--Cc-eEeccchhhhhhhHHHHHHHHhhh
Confidence 35799999999997665 488999999999999999977666554332 22 7899996555 5556677655542
Q ss_pred C--cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-HHHH-HHhhc
Q 000047 1166 I--HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-LNAD-LKHYQ 1241 (2693)
Q Consensus 1166 L--kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-lsra-Lk~Lk 1241 (2693)
+ .+-++.|+. ....+..++|+|-+.|++...+..........||+||.|+|....-. .|.. +..+.
T Consensus 189 v~~~vGL~TGDv----------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDV----------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecce----------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 2 233444432 22457788888889998876555444556688999999999775432 3333 33444
Q ss_pred cc-ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC
Q 000047 1242 SS-HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284 (2693)
Q Consensus 1242 a~-~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k 1284 (2693)
.. +.++||||- ++..+|..|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 43 668999995 445678888764
No 141
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.89 E-value=4.5e-08 Score=134.28 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~ 1187 (2693)
+.+|++.+-+|+|||++++-++..+++..... .++|||-. .|-.|-.++|..+........-..+....+ ..+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~-~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk----~~l~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNP-KVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELK----ELLE 347 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCC-eEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHH----HHHh
Confidence 45799999999999999987777777663333 36666665 555888999998875544333222223322 3333
Q ss_pred cCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchHHHHHH-hhcccccccccccCCCCCHHH
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQSSHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka~~RLLLTGTPLQNnLeE 1259 (2693)
...-.|+|||.+.|....... .....+.-+||+|||||- ....+.+.++ .|....-+++||||+.-.-..
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhccceEEEeeCCcccccccc
Confidence 346689999999987644332 234566788999999995 2333444443 355577799999998654333
No 142
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=1.6e-07 Score=126.18 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=59.5
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHH
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
+....+||.|++-...+......+.++||-.+||+|||+.+|+.+.......+....+++.+.+ +-+.|-.+|+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3445679999999999999999999999999999999998887766655433333446666666 446788999987
No 143
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.83 E-value=3.5e-07 Score=124.31 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccccc
Q 000047 1412 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491 (2693)
Q Consensus 1412 LelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGe 1491 (2693)
.+.+.+.|..+...+.++|||+...++|+.+.+.|....+.. ...|... .|.+++++|++.+.. +|+.|....|
T Consensus 633 ~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwE 706 (820)
T PRK07246 633 AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhC
Confidence 345666665666678899999999999999999887655443 4555332 367799999875444 8899999999
Q ss_pred ccCcc--ccCEEEEecCCC-Cc
Q 000047 1492 GVNLQ--AADTVIIFDTDW-NP 1510 (2693)
Q Consensus 1492 GLNLQ--aADtVIiyDppW-NP 1510 (2693)
|||++ .+..||+.-.|+ +|
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCC
Confidence 99996 466778887664 45
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.83 E-value=1.6e-06 Score=119.51 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=69.7
Q ss_pred HHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCC--eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1413 EMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQY--RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1413 elLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGi--kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
+.+.+.|.++. ..+.++|||+....++..+.++|..... .+..+.-+++...|.+++++|+..+.. +|+.+...
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 45555555544 4667999999999999999988864322 133343333335689999999875443 78889999
Q ss_pred ccccCccc--cCEEEEecCCC-Ccc
Q 000047 1490 GVGVNLQA--ADTVIIFDTDW-NPQ 1511 (2693)
Q Consensus 1490 GeGLNLQa--ADtVIiyDppW-NP~ 1511 (2693)
.||||++. +..|||.-.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999986 58999999888 554
No 145
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.78 E-value=6.7e-08 Score=129.95 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=53.8
Q ss_pred CccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc----ccccccccccCCCC--CHHHHHHH
Q 000047 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ----SSHRLLLTGTPLQN--NLEELWAL 1263 (2693)
Q Consensus 1190 kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk----a~~RLLLTGTPLQN--nLeELwSL 1263 (2693)
.-.|++.|...|..++-...+....+..|||||||++.... ...-.++.|+ ..+.+++|+.|-.. .+..+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~-~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESS-QEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccc-cHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 45789999999988776667777788999999999996433 3344445553 45678999999763 33444444
Q ss_pred hhhc
Q 000047 1264 LNFL 1267 (2693)
Q Consensus 1264 LnFL 1267 (2693)
+.-|
T Consensus 86 mk~L 89 (814)
T TIGR00596 86 MRNL 89 (814)
T ss_pred HHHh
Confidence 4444
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=2.4e-05 Score=105.84 Aligned_cols=120 Identities=14% Similarity=0.183 Sum_probs=98.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+.++.+.|..|||-|.....-++|..+|..+|+++-.|+.... ++-.++|.+- +... .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCCC--cEEEecc
Confidence 346999999999999999999999999999999999999999999988876543 2233455443 3333 4899999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
.+|+|.|+. .-=+||.-..+-+...+.|..||++|-|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999976 245889999999999999999999999987665555
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.70 E-value=2.8e-07 Score=122.28 Aligned_cols=371 Identities=19% Similarity=0.216 Sum_probs=202.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|-+-|..++..+..........+|...||+|||-..+-+|...+..+ +-+||+||. ++..|-...|+..|+ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 3677789999998887542234568999999999999999999888765 347999996 777887788877665 56
Q ss_pred EEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc--ccccchHH--HHH---H
Q 000047 1168 KIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI--KNASCKLN--ADL---K 1238 (2693)
Q Consensus 1168 VIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI--KN~sSKls--raL---k 1238 (2693)
+.+++.. ..+|...|. .+..+...|||-|...+.- .--+-.+|||||=|-- |-.+..+| +.+ +
T Consensus 273 v~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 273 VAVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred hhhhcccCChHHHHHHHH-HHhcCCceEEEEechhhcC-------chhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 6666654 344444443 3556889999999987743 2234689999999984 33322222 111 1
Q ss_pred -hhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhh
Q 000047 1239 -HYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRP 1317 (2693)
Q Consensus 1239 -~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrP 1317 (2693)
++..-..+|-|||| +++-++...+ . .+. .-.+..+++
T Consensus 345 a~~~~~pvvLgSATP---SLES~~~~~~---g-~y~-~~~L~~R~~---------------------------------- 382 (730)
T COG1198 345 AKKENAPVVLGSATP---SLESYANAES---G-KYK-LLRLTNRAG---------------------------------- 382 (730)
T ss_pred HHHhCCCEEEecCCC---CHHHHHhhhc---C-ceE-EEEcccccc----------------------------------
Confidence 22344567889999 2333332210 0 000 000000000
Q ss_pred hhhhhhHhHHhhcCccceeEeeeccccH----HHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCccccchh
Q 000047 1318 FVLRRLKHKVENELPEKIERLVRCEASA----YQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLSQLH 1389 (2693)
Q Consensus 1318 FLLRRtKkDVekeLP~KiE~vV~ceLSa----~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~~~~ 1389 (2693)
...+|.....-+.-+... +-..+++.+.+.+..... .+.+..... + +.+.|.|.+-...
T Consensus 383 ----------~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~-l-~C~~Cg~v~~Cp~- 449 (730)
T COG1198 383 ----------RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPL-L-LCRDCGYIAECPN- 449 (730)
T ss_pred ----------ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccce-e-ecccCCCcccCCC-
Confidence 011221111111100000 113344444443322111 111111111 1 2223333211110
Q ss_pred hhhhhccCCCCCC--ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHH-
Q 000047 1390 AEEVDTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGD- 1464 (2693)
Q Consensus 1390 ~EEid~li~~~~l--~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eE- 1464 (2693)
++..+..+.. .-....|+.-+-+-...+++ |...|+++-. -.+.+++.|.. -+.++.|+|+.++...
T Consensus 450 ---Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~C---gs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~ 521 (730)
T COG1198 450 ---CDSPLTLHKATGQLRCHYCGYQEPIPQSCPEC---GSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKG 521 (730)
T ss_pred ---CCcceEEecCCCeeEeCCCCCCCCCCCCCCCC---CCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchh
Confidence 0000000000 00011122111111111111 3334544321 22344444432 4789999999987543
Q ss_pred -HHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC---Cc---------cchhhhhhhhcccCCcccEEE
Q 000047 1465 -RGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW---NP---------QVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1465 -RqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW---NP---------~~diQAIGRAHRIGQkKeV~V 1531 (2693)
-+.+++.|.+++.+ |||-|.....|+|+++...|.++|.|- +| +.+.|..||++|-+-.-.|.|
T Consensus 522 ~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 522 ALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred hHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 46789999999888 899999999999999999998888762 22 456899999999876666766
Q ss_pred EEEEeC
Q 000047 1532 LRFETV 1537 (2693)
Q Consensus 1532 yRLIT~ 1537 (2693)
-.+...
T Consensus 599 QT~~P~ 604 (730)
T COG1198 599 QTYNPD 604 (730)
T ss_pred EeCCCC
Confidence 554444
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.69 E-value=1e-05 Score=107.02 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC-----CCCcE
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA-----PRIHK 1168 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa-----PsLkV 1168 (2693)
|.+-+.++...+.++...|+-..||+|||+.++..+..++... ...++||++|+..| .|+.+++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7777888888888888888889999999999887765444322 24679999998554 77777776544 24455
Q ss_pred EEEcC
Q 000047 1169 IVYCG 1173 (2693)
Q Consensus 1169 Ivy~G 1173 (2693)
++..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.60 E-value=5.8e-06 Score=110.27 Aligned_cols=104 Identities=23% Similarity=0.257 Sum_probs=77.9
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcCCe-EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc--cC
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--AD 1499 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rGik-ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa--AD 1499 (2693)
...+.++|||+..-.+|..+.++|...... .+...|... +.+++++|...... .|++.+....||||+.. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 344569999999999999999999876653 444555443 55899999876653 58999999999999986 68
Q ss_pred EEEEecCCCC-ccc-----------------------------hhhhhhhhcccCCcccEEE
Q 000047 1500 TVIIFDTDWN-PQV-----------------------------DLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1500 tVIiyDppWN-P~~-----------------------------diQAIGRAHRIGQkKeV~V 1531 (2693)
.||+.-.||= |.. ..|++||+.|--+.+-|.|
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 9999998874 322 2588999988544444433
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.58 E-value=9.1e-06 Score=108.93 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=67.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCC-CHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT-SGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGST-S~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..|+.++.+-+..+.+.|..|||-|.....-+.|..+|...|+++..|+... ..++-.++|.+ ++... .+-|+|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEecc
Confidence 3588888888888889999999999999999999999999999999999864 33444556665 34333 4899999
Q ss_pred ccccccCc
Q 000047 1488 AGGVGVNL 1495 (2693)
Q Consensus 1488 AGGeGLNL 1495 (2693)
.+|+|.|+
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99999774
No 151
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.56 E-value=3e-06 Score=114.32 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV 1501 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV 1501 (2693)
..-+|||-.-...++...+.|.. ..+.++-|+|.++.++..++ |+......+-+++||.++.++|.+..+.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 56799998888888877777776 45788889999999888774 543333334489999999999999999999
Q ss_pred E--------EecCCCCc----------cchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1502 I--------IFDTDWNP----------QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1502 I--------iyDppWNP----------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
| .||+--.- +...||-|||+|.+ +-.+|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHHHH
Confidence 7 34433222 23357777777765 55899999976544
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.53 E-value=2.5e-05 Score=105.29 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhC----CCCCceEEEeee
Q 000047 1412 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ----QDSPFFIFLLSI 1486 (2693)
Q Consensus 1412 LelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~----~dSd~fVfLLST 1486 (2693)
.+.+.+.|.++...+.++|||+..-..|+.+.+.|... ++. +.+.|. ..|.++++.|.+ ++. .+|++|
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 44555656555556667899999999999999888643 333 444563 357889987764 333 378888
Q ss_pred cccccccCccc--cCEEEEecCCC-Cc
Q 000047 1487 RAGGVGVNLQA--ADTVIIFDTDW-NP 1510 (2693)
Q Consensus 1487 rAGGeGLNLQa--ADtVIiyDppW-NP 1510 (2693)
....+|||+.. +..|||.-.|+ +|
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~~p 619 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFAVP 619 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCCCC
Confidence 99999999975 89999999887 34
No 153
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=4e-05 Score=102.95 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC-CCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH-TSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGS-TS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..|+.++.+-+.++.+.|..|||-|.....-+.|...|...|+.+..|+.. ...++-.++|.+ ++... .+-|+|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEecc
Confidence 579999999898999999999999999999999999999999999999986 333444556665 34333 4889999
Q ss_pred ccccccCc
Q 000047 1488 AGGVGVNL 1495 (2693)
Q Consensus 1488 AGGeGLNL 1495 (2693)
.+|+|-|+
T Consensus 498 MAGRGTDI 505 (939)
T PRK12902 498 MAGRGTDI 505 (939)
T ss_pred CCCCCcCE
Confidence 99999764
No 154
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.49 E-value=2.2e-06 Score=110.30 Aligned_cols=89 Identities=18% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHhCCCCCceEEEeeecccccccCccccCEE--------EEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1470 d~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV--------IiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
.+|.++... |-||| .|++-||.||.-..| |-+.+||+...-+|..||+||-.|.+.-.+..||++---|
T Consensus 851 qrFM~GeK~--vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMDGEKL--VAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhccccce--eeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 467666553 44454 899999999975444 5689999999999999999999999887777788877777
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 000047 1542 EQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1542 EkIleraekKl~Li~kVIqa 1561 (2693)
.+......+.++-......+
T Consensus 928 rRFAS~VAKRLESLGALThG 947 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHG 947 (1300)
T ss_pred hHHHHHHHHHHHhhcccccc
Confidence 77777777777666655543
No 155
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.47 E-value=1.4e-06 Score=112.31 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=99.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPsLk 1167 (2693)
.+|-|||..+|..+ .++...++..-|-.|||++|=-.|+.-+.. +.+++.-.|-..|. |=.+||..-|.++
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 58999999988644 457788888889999999986555544332 23467777865554 4567776555433
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchH-H-HHHHhh-cc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKL-N-ADLKHY-QS 1242 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKl-s-raLk~L-ka 1242 (2693)
-+..|+. ......-.+|+|-+.|+..+.+. .+..+.| ||+||.|+|+...... | ..+-.+ ..
T Consensus 200 -GLMTGDV----------TInP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 200 -GLMTGDV----------TINPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred -ceeecce----------eeCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 3333431 12356778999999998765543 3455555 9999999998754321 1 111122 23
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcC
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNK 1284 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~k 1284 (2693)
-+-+.||||- .+...|.+|++.
T Consensus 267 vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 267 VRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred ceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 3447788884 345678888753
No 156
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.42 E-value=1.3e-05 Score=108.20 Aligned_cols=126 Identities=15% Similarity=0.256 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEEEcchHHHHHHHHHHhh----c---CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1411 KLEMLDRLLPKLKAT--DHRVLFFSTMTRLLDVMEDYLTF----K---QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1411 KLelLdeLL~kLkat--GhKVLIFSQft~tLDILed~L~~----r---GikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.+.++..++..+... ...||||-.-...+..+.+.|.. . .+-.+.+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 456666666665443 46899999888887777777752 2 2567788999998777655 6666666777
Q ss_pred EEeeecccccccCccccCEEE--------EecCCCC----------ccchhhhhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1482 FLLSIRAGGVGVNLQAADTVI--------IFDTDWN----------PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVI--------iyDppWN----------P~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
+|++|..+...|.+.++-+|| .||+.-| -+.-.||.|||+|. .+-.+|+|++..-.+.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhhh
Confidence 999999999999999988776 4554432 34457999998886 4558899888765443
No 157
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.40 E-value=1.6e-06 Score=105.26 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=105.1
Q ss_pred CCCcchHHHHHHHHHHHHHhhc------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNN------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
..+.|-.-|+++|-+....+.. +.+.+|.|.+|.||-.|..++|.+.+..++ .+++.|-+...|...-.+.+.
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-CceEEEECChhhhhHHHHHHH
Confidence 4578999999999999876663 556699999999999999999988776543 345555566677776666665
Q ss_pred HHCC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-----CCcccc-cCc------cEEEEccccccc
Q 000047 1161 FWAP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-----RPKLSK-IQW------HYIIIDEGHRIK 1227 (2693)
Q Consensus 1161 KwaP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-----r~~L~k-ikW------d~VIIDEAHRIK 1227 (2693)
...- .+.+..+.. +.......-+..|+++||..|+.... ...|.. ++| .+||+||||++|
T Consensus 113 DIG~~~i~v~~l~~-------~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 113 DIGADNIPVHPLNK-------FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HhCCCcccceechh-------hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 4432 222222111 00111122366799999999987531 222222 122 478899999999
Q ss_pred cccc------hHHHHHHh----hcccccccccccCCC
Q 000047 1228 NASC------KLNADLKH----YQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1228 N~sS------KlsraLk~----Lka~~RLLLTGTPLQ 1254 (2693)
|..+ +...++.. +...+.+..|||...
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS 222 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC
Confidence 9755 45555443 445577889999863
No 158
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.32 E-value=0.00019 Score=95.45 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=104.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHH-HH-CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEIN-FW-APR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfe-Kw-aPs 1165 (2693)
...-.+|.+-+ .....+...+|...+-.|||+..--++...++. .+.+.++.|+|+ .++.|-..++. +| ++.
T Consensus 510 F~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhh-cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 44556888755 344567788999999999999887666666544 456678999997 55566555553 33 222
Q ss_pred Cc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC---cccccCccEEEEccccccccc-cchHHHHHHhh
Q 000047 1166 IH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP---KLSKIQWHYIIIDEGHRIKNA-SCKLNADLKHY 1240 (2693)
Q Consensus 1166 Lk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~---~L~kikWd~VIIDEAHRIKN~-sSKlsraLk~L 1240 (2693)
+. .+...|.-.. ...+..-...|+||-++.+....-.. .-.--+..|||+||.|.+.+. ....+..+-.+
T Consensus 585 ~~rg~sl~g~ltq-----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQ-----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred cccchhhHhhhhH-----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 22 2222232111 11122347899999999886543221 111124689999999999885 45666666666
Q ss_pred cccccccccccCCCCCHHHHHHHhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
-....|+|+||- +|+..++-.++
T Consensus 660 i~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEeccc--CCHHHHHHHHH
Confidence 556678999995 66666666565
No 159
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.26 E-value=5.4e-05 Score=98.41 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=76.4
Q ss_pred CeEEEEEcchHHHHHHHHHHhhc----CC----eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcccc
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFK----QY----RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~r----Gi----kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA 1498 (2693)
.-+|||=.-.+.++.+.+.|... +- -++-++|+++.++..++ |.....+++-+++||..+..-|.+..+
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecce
Confidence 46888887777766666666432 21 24678999998876644 655455677899999999999999998
Q ss_pred CEEEEec----CCCCc-----------cchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1499 DTVIIFD----TDWNP-----------QVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1499 DtVIiyD----ppWNP-----------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
-+||=-. ..||| ..-.||.=|++|.|.+.+..+|||+++.-.+
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 8886211 12344 1223555555555556677999999987663
No 160
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.22 E-value=1e-05 Score=109.90 Aligned_cols=172 Identities=19% Similarity=0.167 Sum_probs=106.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHH---------HHHHCCC--CcEEEEcCCh--
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESE---------INFWAPR--IHKIVYCGPP-- 1175 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eE---------feKwaPs--LkVIvy~Gs~-- 1175 (2693)
.+..+.++||+|||.+++..|.+|....+. ..+|||||..-+.. ...- |...+.+ ++..+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 466789999999999999999998776554 45999999855432 2222 2222322 4445555332
Q ss_pred --------HHHHHHHHhh-hhcCCccEEEEcHHHHHhccCCCcc------cc--cCc-------cEEEEccccccccccc
Q 000047 1176 --------EERRRLFKEK-IVHQKFNVLLTTYEYLMNKHDRPKL------SK--IQW-------HYIIIDEGHRIKNASC 1231 (2693)
Q Consensus 1176 --------~eRk~l~ke~-i~~~kfdVVITTYE~Lik~~Dr~~L------~k--ikW-------d~VIIDEAHRIKN~sS 1231 (2693)
..-....... ......+|+|+|.+.|.+....... .. ..| -+|||||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 1111111110 1122589999999999663210010 11 122 3799999999955 34
Q ss_pred hHHHHHHhhcccccccccccCCC-------C--CHHHHHHHhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQ-------N--NLEELWALLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQ-------N--nLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
+.+.++..++..+.|..|||--. | ...++++++--| ...+.|.+.+.+-+..
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V 278 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDI 278 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEE
Confidence 56788889999999999999743 1 112355555443 4577888877666554
No 161
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.20 E-value=6.1e-07 Score=89.23 Aligned_cols=61 Identities=36% Similarity=0.567 Sum_probs=44.3
Q ss_pred CCCCCCCCChhHHHHHHHHhhccCCCCCCCCCCccccccccccccccccccCCCccccccccccccCCHHHHH
Q 000047 1642 PPLPSRLVTDDDLKALYEAMKIYDAPKTGVSPNVGVKRKGEHLGALDTQHYGRGKRAREVRSYEEQWTEEEFE 1714 (2693)
Q Consensus 1642 ~~~p~rl~~~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRG~r~rk~~~Y~d~~te~q~l 1714 (2693)
..+|.|||+++|||++|..+.... ..+...........+|||+|+||.++|+|+|||+|||
T Consensus 14 ~~~p~RLm~e~ELPe~~~~d~~~~------------~~~~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 14 KPYPSRLMEESELPEWYREDIEEE------------LEKEEEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CCCCccccchhhchHHHHhcchhh------------hhhhhhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 357889999999999998732110 0111112223446789999999999999999999996
No 162
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.18 E-value=2.3e-05 Score=100.50 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=62.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC----CCCcc--------------
Q 000047 1450 QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT----DWNPQ-------------- 1511 (2693)
Q Consensus 1450 GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp----pWNP~-------------- 1511 (2693)
++.++-|...++.+-..+ -|.....+++-+|++|..+.+.|.+..+.+||=... -+||.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 566777777777654443 365556667889999999999999999999884322 13432
Q ss_pred chhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1512 VDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1512 ~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
.-.||.|||+| +.+-..|||+|+.+....++
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhcc
Confidence 22455555555 55669999999987766554
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.17 E-value=4.4e-05 Score=101.74 Aligned_cols=112 Identities=13% Similarity=0.296 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
+..++..++..| ..|++|.|||......+++++++...+.+++.+++..+..+. +.| .++.| ++=|.+..
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W----~~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW----KKYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc----cceeE-EEEeceEE
Confidence 445556666654 458999999999999999999999999999999987765532 334 23444 55567888
Q ss_pred cccCccc--cCEEEEe--cCCCCccc--hhhhhhhhcccCCcccEEEEE
Q 000047 1491 VGVNLQA--ADTVIIF--DTDWNPQV--DLQAQARAHRIGQKRDVLVLR 1533 (2693)
Q Consensus 1491 eGLNLQa--ADtVIiy--DppWNP~~--diQAIGRAHRIGQkKeV~VyR 1533 (2693)
.||++-. .|.|..| ....-|.+ ..|.+||+..+.. +++.||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 9999865 5777767 44455665 5899999988775 5566654
No 164
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.14 E-value=3.7e-05 Score=102.46 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=90.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcCCCCCEEEEecCchHHH-HHHHHHHHCC--C
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKNDRGPFLVVVPSSVLPG-WESEINFWAP--R 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKwaP--s 1165 (2693)
+++++|.+.+.--. ...+.|.|.+.+++-|||+++=.+++. ++.. .+-+|.|.|--.+.+ =..++..+.- +
T Consensus 223 ~~fewq~ecls~~~--~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPR--LLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcchh--hhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 67788888875322 236789999999999999987544433 2322 233677888655444 3444444432 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc---cccCccEEEEcccccccc--ccchHHHHHHhh
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL---SKIQWHYIIIDEGHRIKN--ASCKLNADLKHY 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L---~kikWd~VIIDEAHRIKN--~sSKlsraLk~L 1240 (2693)
+.+-.|.|... ..-....-.|.|+|.+.-....+. .+ ......+|||||-|-+.. .+.-+-..|..+
T Consensus 298 ~~ve~y~g~~~-------p~~~~k~~sv~i~tiEkanslin~-lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 298 FPVEEYAGRFP-------PEKRRKRESVAIATIEKANSLINS-LIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred CcchhhcccCC-------CCCcccceeeeeeehHhhHhHHHH-HHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 55555655321 111223567889998865432211 11 112347899999999854 333333333322
Q ss_pred ----cc--cccccccccCCCCCHHH
Q 000047 1241 ----QS--SHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1241 ----ka--~~RLLLTGTPLQNnLeE 1259 (2693)
.. -..+++|||-.+|.+-.
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~~lL~ 394 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNNSLLQ 394 (1008)
T ss_pred HHhccccceeEeeeecccCChHHHH
Confidence 11 23589999986554433
No 165
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=0.0012 Score=85.76 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=57.3
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCC------CCc--------------
Q 000047 1451 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTD------WNP-------------- 1510 (2693)
Q Consensus 1451 ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDpp------WNP-------------- 1510 (2693)
+-++-|+.+.+.+...++ |...-.+.+-++|+|..+.+.|.+..+.+|| ||- +||
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 446667888887766554 5443445677899999999999998888886 433 333
Q ss_pred cchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1511 ~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+.-.||.|||+|.|-. .+|||++.-+
T Consensus 582 AsA~QRaGRAGRtgPG---KCfRLYt~~a 607 (902)
T KOG0923|consen 582 ASANQRAGRAGRTGPG---KCFRLYTAWA 607 (902)
T ss_pred hhhhhhccccCCCCCC---ceEEeechhh
Confidence 3346999999988865 5777777433
No 166
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.3e-05 Score=101.98 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=57.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE--------EecC---------CC-Cccchh
Q 000047 1453 YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI--------IFDT---------DW-NPQVDL 1514 (2693)
Q Consensus 1453 ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI--------iyDp---------pW-NP~~di 1514 (2693)
++-|..-.+.++.. +-|.......+.++++|.++.+.|.++.+.+|| +||. .| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q~---RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQM---RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHhh---hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 34455555555443 446555667889999999999999999999998 3443 34 445567
Q ss_pred hhhhhhcccCCcccEEEEEEEeC
Q 000047 1515 QAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1515 QAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
||.|||+|+|-. +.|||+..
T Consensus 684 QRAGRAGRtgpG---HcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTGPG---HCYRLYSS 703 (1172)
T ss_pred hhccccCCCCCC---ceeehhhh
Confidence 999999999866 78888764
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.98 E-value=1.8e-05 Score=87.66 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCChHHHHHH-HHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhh
Q 000047 1109 QLNGILADEMGLGKTVQVIA-LICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIV 1187 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIA-LIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~ 1187 (2693)
+.--+|-.-+|.|||...|- ++...+ .....+||+.|+.++. +|+.+...+..+. |.-.-..+ ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva---~em~~aL~~~~~~-~~t~~~~~-------~~ 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVA---EEMYEALKGLPVR-FHTNARMR-------TH 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHH---HHHHHHTTTSSEE-EESTTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHH---HHHHHHHhcCCcc-cCceeeec-------cc
Confidence 33457777899999998764 333232 2345699999998874 3555555455432 22221111 11
Q ss_pred cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHH-HHHhhc---ccccccccccC
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNA-DLKHYQ---SSHRLLLTGTP 1252 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsr-aLk~Lk---a~~RLLLTGTP 1252 (2693)
.++.-|-+++|.++...... .....+|++||+||||-. +..+-..+ .+..+. ....|++||||
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 35566778888877653322 344568999999999985 33332222 223331 13578999999
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.89 E-value=7.8e-05 Score=91.07 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.||.|++-...+...+.++..+|+-.+||+|||+.+|..+..++...... .++++++++..+ .+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999999988888999999999999999999987765443332221 256777776443 4445555543
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.89 E-value=7.8e-05 Score=91.07 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC---CCEEEEecCchH-HHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDR---GPFLVVVPSSVL-PGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~---gP~LIVVPtSLL-~QW~eEfeKw 1162 (2693)
.+.||.|++-...+...+.++..+|+-.+||+|||+.+|..+..++...... .++++++++..+ .+-..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999999988888999999999999999999987765443332221 256777776443 4445555543
No 170
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.0015 Score=88.05 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=92.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+......|..|||.+.....-+.+...|...|++...|+-.-. .|+.-|-.+ ++..+ .+=|+|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 446999999999999999999999999999999999999999999988876554 555555544 34333 3678999
Q ss_pred ccccccCcccc-C----------EEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1488 AGGVGVNLQAA-D----------TVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1488 AGGeGLNLQaA-D----------tVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
.+|+|-||.-- + +||--...-+-..+.|--||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 99999998642 2 567777777777788999999999944
No 171
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.85 E-value=0.0018 Score=88.84 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=35.7
Q ss_pred CceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCccc
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKe 1528 (2693)
+..+++|+|.+...|+|+ ++|.+|.-= -.....+|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~-dfd~~~~~~--~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDH-DYDWAIADP--SSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEecc-cCCeeeecc--CcHHHHHHHhhcccccccCCC
Confidence 355789999999999996 466665422 234468999999999987643
No 172
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.61 E-value=0.00012 Score=88.92 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=76.2
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCcccc--------CEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA--------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA--------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
...+.|+++... |+|| ++||+.||.|++- ..-|.++++|+....+|.+||+||.||.....+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456699888654 4455 5999999999952 3457899999999999999999999999887666777778
Q ss_pred CHHHHHHHHHHHHHHHHhhhccc
Q 000047 1539 TVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqa 1561 (2693)
..|.+......+|+.-..+...+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 88999999999999888777654
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.58 E-value=0.00071 Score=77.28 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHhhcCCC-eEEEcCCCCChHHHHHHHHHHHHH-----hcCCCCCEEEEecCch-HHHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLN-GILADEMGLGKTVQVIALICYLME-----TKNDRGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~k~~~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
+|-+.|.+++..++. ... .++....|+|||.+..+++..++. .....+++||++|+.. +.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999976654 444 788999999999888888877742 2455667999999744 5676666665
No 174
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.56 E-value=0.0005 Score=87.12 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCC----eEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQY----RYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGi----kylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+.|+.....++.++...+-|+|-||..++.++++....+ ..+- .+..+.|+-..++|.++-...--++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 3457777778888888889999999999998877644332 2221 23456788888899888765433332
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHH
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkI 1544 (2693)
.-+|+|.|+.+|||+-..|.||.+..|.+...+.|..|||+|-.. +-...+.+...-+|..-
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk--~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK--PSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC--CceEEEEEeccchhhHh
Confidence 358999999999999999999999999999999999999999653 32222344456666543
No 175
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.49 E-value=0.0003 Score=89.79 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=79.3
Q ss_pred cCCCeEEEEEcchHHHHHHHHHHhhcCCe-EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1424 ATDHRVLFFSTMTRLLDVMEDYLTFKQYR-YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1424 atGhKVLIFSQft~tLDILed~L~~rGik-ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
+.|.-|+-||... +-.+...++.+|.. .+.|.|+.+++.|..--..||+++.++. +|++|+|.|.|||| .++.||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d-vlVAsDAIGMGLNL-~IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD-VLVASDAIGMGLNL-NIRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc-eEEeeccccccccc-ceeEEE
Confidence 4577888887543 22344455556655 9999999999999999999999887765 58889999999998 689999
Q ss_pred EecCC---------CCccchhhhhhhhcccCCccc
Q 000047 1503 IFDTD---------WNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1503 iyDpp---------WNP~~diQAIGRAHRIGQkKe 1528 (2693)
||+.- -.-.+..|--|||+|.|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 99876 233455799999999998754
No 176
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=97.34 E-value=0.00048 Score=67.87 Aligned_cols=70 Identities=26% Similarity=0.429 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 000047 914 ERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKI 983 (2693)
Q Consensus 914 e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~ 983 (2693)
+++.+.+..+..++.+|..|..+|.++.+.++.+.+++.+.|..||...++++.++.+|.+++||++|++
T Consensus 4 ~~~~r~k~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 4 EEPKRQKTHHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 4455667888899999999999999999999999999999999999999999999999999999999974
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.27 E-value=0.00035 Score=84.25 Aligned_cols=144 Identities=17% Similarity=0.139 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc---
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH--- 1167 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk--- 1167 (2693)
+-..|...+.|+.. +...++..+.|+|||+.++++....+..+. ...++|+-|.-.. .|...|.|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 34568887777754 557788899999999999999887654433 3333443333211 12222222110
Q ss_pred EEE-----------EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHH
Q 000047 1168 KIV-----------YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1168 VIv-----------y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
... +.|... +...+....-.|-|....+++.. .+.-++|||||||++.- ......
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymRGr-------tl~~~~vIvDEaqn~~~--~~~k~~ 196 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMRGR-------TFENAVVILDEAQNVTA--AQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhcCC-------cccCCEEEEechhcCCH--HHHHHH
Confidence 000 011100 01111112345777777777641 23458999999999854 455566
Q ss_pred HHhhcccccccccccCCCCCH
Q 000047 1237 LKHYQSSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQNnL 1257 (2693)
+.++....+++|+|-|-|.++
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HhhcCCCCEEEEeCChhhccC
Confidence 678888899999999976654
No 178
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.20 E-value=0.00077 Score=92.02 Aligned_cols=183 Identities=22% Similarity=0.244 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCC--hHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLG--KTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLG--KTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsL 1166 (2693)
..+.+||...+.-..... ....+++++.|+| ||+.+..++.+...... ...+++++|..+..+|..+...++..-
T Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 83 FILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRGE-IKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred cccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhhh-hccceeccchHHHHHHHHHhhhhcccc
Confidence 355666766553332222 2236889999999 99998877776654443 345899999888899988887663211
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc--CCCcccccCc---cEEEEcccccccccc---------ch
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH--DRPKLSKIQW---HYIIIDEGHRIKNAS---------CK 1232 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~--Dr~~L~kikW---d~VIIDEAHRIKN~s---------SK 1232 (2693)
..++.......................++..++...... ....+....| +++++||+|.+.+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred chhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111100000000000000000010233333333221 1123444456 899999999997742 22
Q ss_pred HHHHHHhhcc--------cccccccccCCCCCHHHHHHHhhhccCCCCCC
Q 000047 1233 LNADLKHYQS--------SHRLLLTGTPLQNNLEELWALLNFLLPNIFNS 1274 (2693)
Q Consensus 1233 lsraLk~Lka--------~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S 1274 (2693)
.+..+..... ...+++++||......+++...+++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 3333332211 12357899999888888877666666655544
No 179
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=97.09 E-value=0.0015 Score=65.12 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 000047 915 RQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLK 982 (2693)
Q Consensus 915 ~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk 982 (2693)
++.+.+..+..+++++..|..+|.+..+.++.+++++.+.|..||...++++.++.+|.+++||++|+
T Consensus 5 ~e~r~k~h~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~ 72 (73)
T smart00573 5 EERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLA 72 (73)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778889999999999999999999999999999999999999999999888999999999986
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.97 E-value=0.0026 Score=84.87 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=101.4
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH--------HHHHH-HHHCCCC--cEEEEcCC
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG--------WESEI-NFWAPRI--HKIVYCGP 1174 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q--------W~eEf-eKwaPsL--kVIvy~Gs 1174 (2693)
+....|+=+-+|||+|||++.+-++..|-...+..+ |+||||.-.+.- -.+.| ..++.+. ..++|.
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~K-FIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~-- 147 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFK-FIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD-- 147 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHhCcee-EEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec--
Confidence 444567767899999999999999988876655554 999999754421 12233 3333333 333343
Q ss_pred hHHHHHHHHhhhhcCCccEEEEcHHHHHhcc-CCCc-----ccccC---------------ccEEEEccccccccccchH
Q 000047 1175 PEERRRLFKEKIVHQKFNVLLTTYEYLMNKH-DRPK-----LSKIQ---------------WHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1175 ~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~-Dr~~-----L~kik---------------Wd~VIIDEAHRIKN~sSKl 1233 (2693)
.......+ -......|+|.+.+.+.+.. +... ..... --+|||||-|+|... .+.
T Consensus 148 ~~~~~~~~---~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~ 223 (985)
T COG3587 148 EDIEKFKF---KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKT 223 (985)
T ss_pred hHHHHHhh---ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHH
Confidence 22211111 23456788899888886641 0111 11111 137999999999876 788
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHH-HhhhccCCCCCChhHHHHHhcCcccC
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWA-LLNFLLPNIFNSSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwS-LLnFL~P~iF~S~k~F~e~F~kP~e~ 1288 (2693)
+.++..+.....|=..||= .|-|. ++- .+.+.+.|.+...+.+..
T Consensus 224 ~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~v 269 (985)
T COG3587 224 YGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIRV 269 (985)
T ss_pred HHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhheee
Confidence 8999999888777777774 33333 221 234566777766555443
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.95 E-value=0.0034 Score=73.84 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH-----HHHCCCC
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI-----NFWAPRI 1166 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf-----eKwaPsL 1166 (2693)
-.+|...++.|. +....++....|+|||+.|++...+++..+. ...++|+-|..-...+.--+ +|..|-+
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTT
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 467999888777 3567788899999999999999998887744 44466666655332221100 1111111
Q ss_pred cEEE-----EcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1167 HKIV-----YCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1167 kVIv-----y~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
..+. +.+. .....+ .....|-+....+++. ..+++.+||||||+++... .+...+.++.
T Consensus 81 ~p~~d~l~~~~~~-~~~~~~------~~~~~Ie~~~~~~iRG-------rt~~~~~iIvDEaQN~t~~--~~k~ilTR~g 144 (205)
T PF02562_consen 81 RPIYDALEELFGK-EKLEEL------IQNGKIEIEPLAFIRG-------RTFDNAFIIVDEAQNLTPE--ELKMILTRIG 144 (205)
T ss_dssp HHHHHHHTTTS-T-TCHHHH------HHTTSEEEEEGGGGTT---------B-SEEEEE-SGGG--HH--HHHHHHTTB-
T ss_pred HHHHHHHHHHhCh-HhHHHH------hhcCeEEEEehhhhcC-------ccccceEEEEecccCCCHH--HHHHHHcccC
Confidence 0000 0010 001111 1234566666666653 1234689999999998533 3445566777
Q ss_pred ccccccccccCCCCCHH
Q 000047 1242 SSHRLLLTGTPLQNNLE 1258 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLe 1258 (2693)
...+++++|-|.|.+..
T Consensus 145 ~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 145 EGSKIIITGDPSQIDLP 161 (205)
T ss_dssp TT-EEEEEE--------
T ss_pred CCcEEEEecCceeecCC
Confidence 78899999999776654
No 182
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.55 E-value=0.024 Score=69.25 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwa 1163 (2693)
|..+++-|+-|+-.| ..|-|.-..||=|||+++..+++ +... ..+++-||+-+..|. +|...|-+|+
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~-~~AL--~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAA-LNAL--QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHH-HHHT--TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHH-HHHH--hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 456777788877544 23558889999999999854443 3322 234578888887773 4888888888
Q ss_pred CCCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHh-----ccCC--CcccccCccEEEEcccccc
Q 000047 1164 PRIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMN-----KHDR--PKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1164 PsLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik-----~~Dr--~~L~kikWd~VIIDEAHRI 1226 (2693)
++.+-...... ..|+..+ ..+|+.+|-..+.- .... .......++++||||++-+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y-------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAY-------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHHH-------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 45554444432 3333332 35788887765542 2211 1222457899999999886
No 183
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.38 E-value=0.045 Score=69.88 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=67.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHhh----c-----CCeEEEEeCCCCHHHHHHHHHHH--hCCCCCceEEEeeecccccccC
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTF----K-----QYRYLRLDGHTSGGDRGALIDKF--NQQDSPFFIFLLSIRAGGVGVN 1494 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~----r-----GikylRLDGSTS~eERqeiId~F--N~~dSd~fVfLLSTrAGGeGLN 1494 (2693)
..-||||-.-.+.++...+.+.. . -++++-|+ +.+.+.+.+-- +..+..-+-+++||..+..-|.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 45788998776655544443321 1 13444444 22233222111 1112223557999999999988
Q ss_pred ccccCEEEEecCC------CCcc-----------chhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1495 LQAADTVIIFDTD------WNPQ-----------VDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1495 LQaADtVIiyDpp------WNP~-----------~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+..+-+|| |+- +||. .-.||.-|++|.|.+++-..|+|+++...+
T Consensus 329 idgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 329 IDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 87766665 433 4553 346888999999999999999999976543
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.33 E-value=0.0076 Score=68.37 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=57.0
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcC----CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec--ccccccCcc
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR--AGGVGVNLQ 1496 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rG----ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr--AGGeGLNLQ 1496 (2693)
...+.++|||+..-..++.+.++|...+ +.+. .. ...++.++++.|..... .+|+++. ...+|||+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCC
Confidence 4556899999999999999999997653 3222 22 24578999999987544 3788888 899999998
Q ss_pred c--cCEEEEecCCC
Q 000047 1497 A--ADTVIIFDTDW 1508 (2693)
Q Consensus 1497 a--ADtVIiyDppW 1508 (2693)
. |..||+.-.|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 89999999997
No 185
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.29 E-value=0.023 Score=76.99 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHHHhhhhcCCccEEE
Q 000047 1119 GLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPP--EERRRLFKEKIVHQKFNVLL 1195 (2693)
Q Consensus 1119 GLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVI 1195 (2693)
|+|||-..+.++...+..++ -+||++|. ++..|+...|...++...+.+|+... .+|.+.|.. +..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~-~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA-VLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH-HhCCCCcEEE
Confidence 99999999999988876543 38999997 66789999999999756777788754 445455533 5567889999
Q ss_pred EcHHHHHhccCCCcccccCccEEEEcccccc--ccccchHH--HHH---H-hhcccccccccccC
Q 000047 1196 TTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI--KNASCKLN--ADL---K-HYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1196 TTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI--KN~sSKls--raL---k-~Lka~~RLLLTGTP 1252 (2693)
-|...+.- .--+..+|||||=|.- |....-++ +.+ + .+..-..|+-|+||
T Consensus 246 GtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 99986632 3335689999998874 33222221 111 1 22344557779999
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.011 Score=74.37 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=54.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH-HHHHHC-CCCcEEEEcCChHHHHHHHHhhhhcC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES-EINFWA-PRIHKIVYCGPPEERRRLFKEKIVHQ 1189 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e-EfeKwa-PsLkVIvy~Gs~~eRk~l~ke~i~~~ 1189 (2693)
.|+--..|+|||+.++.++..+..... ....+++|....+.+... .|..-. +.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~-~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------------ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEE-GKKVLYLCGNHPLRNKLREQLAKKYNPK------------------------ 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcccc-CCceEEEEecchHHHHHHHHHhhhcccc------------------------
Confidence 356678999999999999988822222 334688888777666433 443222 10
Q ss_pred CccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1190 KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1190 kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
.....+..+..++............+|+|||||||+|..
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 111122223333332211233456789999999999976
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.20 E-value=0.019 Score=75.18 Aligned_cols=76 Identities=22% Similarity=0.394 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPsLk 1167 (2693)
.+|-.-|..+|...+. +.=.||....|+|||++..+++++|.+. ..+|+||++|..+ +.|..+.|.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 4788999999998875 5556899999999999999999998876 5678999999876 577777776654 55
Q ss_pred EEEEc
Q 000047 1168 KIVYC 1172 (2693)
Q Consensus 1168 VIvy~ 1172 (2693)
++...
T Consensus 481 VvRl~ 485 (935)
T KOG1802|consen 481 VVRLC 485 (935)
T ss_pred Eeeee
Confidence 55443
No 188
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.19 E-value=0.038 Score=64.35 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=68.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEE
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKI 1169 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVI 1169 (2693)
+|-+-|.+++..++. ....-.+|.-.-|+|||.....++. .+...+ ..+++++|+..... ++.+-..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~-~~~~~g--~~v~~~apT~~Aa~---~L~~~~~----- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAE-ALEAAG--KRVIGLAPTNKAAK---ELREKTG----- 67 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHH-HHHHTT----EEEEESSHHHHH---HHHHHHT-----
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHH-HHHhCC--CeEEEECCcHHHHH---HHHHhhC-----
Confidence 477899999998865 1223357778899999987655444 444332 45899999866533 2221110
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCccc----ccCccEEEEccccccccccchHHHHHHhhcc-cc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLS----KIQWHYIIIDEGHRIKNASCKLNADLKHYQS-SH 1244 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~----kikWd~VIIDEAHRIKN~sSKlsraLk~Lka-~~ 1244 (2693)
+-..|...+.......... ...+++||||||-.+-.. .+...+..+.. ..
T Consensus 68 -----------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~--~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 -----------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR--QLARLLRLAKKSGA 122 (196)
T ss_dssp -----------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH--HHHHHHHHS-T-T-
T ss_pred -----------------------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHH--HHHHHHHHHHhcCC
Confidence 1112333332222211111 345689999999987432 23344444433 66
Q ss_pred cccccccCCC
Q 000047 1245 RLLLTGTPLQ 1254 (2693)
Q Consensus 1245 RLLLTGTPLQ 1254 (2693)
+|+|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 8999998854
No 189
>PF13892 DBINO: DNA-binding domain
Probab=95.93 E-value=0.16 Score=56.89 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=56.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000047 944 KRERWRGVNKYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSKLQ 1020 (2693)
Q Consensus 944 ~~~~~~~~~~~v~~~~~~~ek~~~~~~er~~keRl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~v~ 1020 (2693)
-.-|.+++.+.|..|+++.++++++...+.+++.++..+..++.. . ......||.+||.|||-|.+++.....
T Consensus 62 ~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e--~~rq~~rl~fLl~QTElfsHF~~~k~~ 134 (139)
T PF13892_consen 62 TQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E--AKRQQRRLNFLLTQTELFSHFMQNKAK 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H--HHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 345667888999999999999999888888888887776554421 1 122357999999999999999876643
No 190
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.72 E-value=0.063 Score=72.78 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIA 1128 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIA 1128 (2693)
.++|+-|+.-...+++.+++..+|+|-.+||+|||+.-|+
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 5678999998888999999999999999999999986543
No 191
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.65 E-value=0.038 Score=70.98 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=49.6
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
..+-++.....+|-|.+-..-+...+..+..|+|-+..|+|||+.-++++..+....+..-.-||-|-.
T Consensus 7 ~l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 7 DLLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred CeeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 445566667889999876555566677888999999999999999998876554444433334676654
No 192
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.40 E-value=0.11 Score=71.99 Aligned_cols=42 Identities=19% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcC--CC-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ--LN-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--ln-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++ .+ -||....|+|||..+..|...|+..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 444444444444332 23 4789999999999999998888654
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.37 E-value=0.024 Score=60.18 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecCch-HHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPSSV-LPGWESEINFW-APRIHKIVYCGPPEERRRLFK 1183 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPtSL-L~QW~eEfeKw-aPsLkVIvy~Gs~~eRk~l~k 1183 (2693)
+..++|..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++... ...... ..+.. .++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~---~l~- 76 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTSD---ELR- 76 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-HH---HHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCHH---HHH-
Confidence 44568889999999998877776654321 11222344555443 34444444322 211111 11111 111
Q ss_pred hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh--cccccccccccC
Q 000047 1184 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHRLLLTGTP 1252 (2693)
Q Consensus 1184 e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L--ka~~RLLLTGTP 1252 (2693)
+.+.. .+....-.+|||||+|++. .......++.+ .....++|.|||
T Consensus 77 ---------------~~~~~-----~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 ---------------SLLID-----ALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ---------------HHHHH-----HHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------HHHHH-----HHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 11111 1222223789999999984 24455555555 455669999999
No 194
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.33 E-value=0.13 Score=69.85 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
...|-+.|..+|.+++. +....|+-...|+|||.+.++++..++..+. ++||++|+.. +.+..+.+..
T Consensus 155 ~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999988654 3356788899999999999999988876432 6999999866 4666666655
No 195
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=95.31 E-value=0.33 Score=66.02 Aligned_cols=139 Identities=20% Similarity=0.171 Sum_probs=71.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH-HHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE-INFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE-feKwa--PsL 1166 (2693)
.|.+||.+.+.-++. ..++++...-|||==-.++.++..+ -..+ .|+++=+ ...|.++ |.... +.+
T Consensus 13 ~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~-sL~LvLN--~~~~ee~~f~s~lk~~~~ 81 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPG-SLVLVLN--TQEAEEEYFSSKLKEPLV 81 (892)
T ss_pred ccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCcc-ceEEEec--CchhhHHHHHHhcCcCCC
Confidence 388999998877663 4566777778999544443333322 2233 3333322 3446555 11111 111
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL 1246 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RL 1246 (2693)
..+.-.-....|+..+. .-.|+++|--.|..+.-...+.-.+...|+++=||.+.+.. .-.-+++.|+.+.+.
T Consensus 82 t~~~s~ls~~~R~~~Yl------~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets-~eaFIlRl~R~knk~ 154 (892)
T KOG0442|consen 82 TEDPSELSVNKRRSKYL------EGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETS-QEAFILRLYRSKNKT 154 (892)
T ss_pred ccChhhcchhhhHHhhh------cCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcc-hhHHHHHHHHHhcCC
Confidence 11111112233333322 22344444444444333345556678899999999997644 334455555554443
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.31 E-value=0.076 Score=55.54 Aligned_cols=56 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1097 SGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1097 eGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.++...... +...+|..+.|+|||..+-.++..+. ....+++++........+
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~ 62 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGL 62 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhh
Confidence 344444444333 55678899999999987766665554 223445555544433333
No 197
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.17 E-value=0.052 Score=71.33 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eE 1158 (2693)
...|-+-|..++.++.. +..=.|+-.+.|+|||.+..-+|..++..+ ..+||.+|+.+ +.|..+.
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 35677889999988875 223346778999999999999999988654 45899999866 5776664
No 198
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.42 E-value=0.22 Score=68.63 Aligned_cols=134 Identities=22% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|.+-|++++..+.. +.-.||....|+|||.++-+++..+... ....++++++|+..-.....|.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhc----CCc
Confidence 45789999999987753 5568899999999998876666654432 22246888999877766544421 000
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLL 1247 (2693)
. ....+++.. .... . . ....-.....++||||||+.+-.. .+.+.+..+....+|+
T Consensus 392 a-------~Tih~lL~~---~~~~--~------~----~~~~~~~~~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 392 A-------STIHRLLGY---GPDT--F------R----HNHLEDPIDCDLLIVDESSMMDTW--LALSLLAALPDHARLL 447 (720)
T ss_pred c-------ccHHHHhhc---cCCc--c------c----hhhhhccccCCEEEEeccccCCHH--HHHHHHHhCCCCCEEE
Confidence 0 000011100 0000 0 0 000001245789999999998432 3445556667777899
Q ss_pred ccccCCC
Q 000047 1248 LTGTPLQ 1254 (2693)
Q Consensus 1248 LTGTPLQ 1254 (2693)
|-|=|-|
T Consensus 448 lvGD~~Q 454 (720)
T TIGR01448 448 LVGDTDQ 454 (720)
T ss_pred EECcccc
Confidence 9887754
No 199
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.40 E-value=1.2 Score=59.99 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=49.9
Q ss_pred CeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCC-----HHHHHHHHHHHhCCCC-CceEEEee--ecccccccCccc-
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS-----GGDRGALIDKFNQQDS-PFFIFLLS--IRAGGVGVNLQA- 1497 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~rGikylRLDGSTS-----~eERqeiId~FN~~dS-d~fVfLLS--TrAGGeGLNLQa- 1497 (2693)
.=|++|...-..+..+..++...|+- .+|.|.-+ .+--..+++.|...-. ..-.+|++ -.-+++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 56888888888888888888766641 12222110 0013455666643111 11135555 344568999988
Q ss_pred -cCEEEEecCCCC
Q 000047 1498 -ADTVIIFDTDWN 1509 (2693)
Q Consensus 1498 -ADtVIiyDppWN 1509 (2693)
+..||...+|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 899999999885
No 200
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.01 E-value=0.23 Score=66.87 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCchHHH-HHHHHHHHCCCCcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSSVLPG-WESEINFWAPRIHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtSLL~Q-W~eEfeKwaPsLkVI 1169 (2693)
++|+.++...+. +.-.||....|+|||.++..++..+...... ...+++++|+..-.. ..+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999877765 5667899999999999988888777654332 135899999866544 33333222211110
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC-C-----CcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD-R-----PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D-r-----~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
..... . ...+-..|...+..... . ..-....+++||||||-.+-. ..+.+.+..+...
T Consensus 223 ----~~~~~-----~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 ----AEALI-----A-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPPN 286 (586)
T ss_pred ----chhhh-----h-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCCC
Confidence 00000 0 00111223333322110 0 011224689999999987732 2345556667777
Q ss_pred ccccccccCCC
Q 000047 1244 HRLLLTGTPLQ 1254 (2693)
Q Consensus 1244 ~RLLLTGTPLQ 1254 (2693)
.||+|.|=|-|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 88999998754
No 201
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=0.054 Score=70.66 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=57.4
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-CchHHHHHHHHH-----HHCCCCcEEEEcCChHHHHHH--HHhhhh
Q 000047 1116 DEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-SSVLPGWESEIN-----FWAPRIHKIVYCGPPEERRRL--FKEKIV 1187 (2693)
Q Consensus 1116 DEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-tSLL~QW~eEfe-----KwaPsLkVIvy~Gs~~eRk~l--~ke~i~ 1187 (2693)
+.||+|||+++.++|++++..+.. -+|..|- ++++..-...|. ++.- -.++.|.+..-..+.+ +.+ -
T Consensus 4 matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fse--h 78 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSE--H 78 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCc--c
Confidence 579999999999999999876543 3666664 566654433331 1110 1122222221111110 111 2
Q ss_pred cCCccEEEEcHHHHHhccCCCc-----cccc--CccEEEEcccccc
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPK-----LSKI--QWHYIIIDEGHRI 1226 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~-----L~ki--kWd~VIIDEAHRI 1226 (2693)
.....|+.||.+.|..+.-+.. |... .--+++-||||++
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 3467899999988865432211 1111 1124566999998
No 202
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.96 E-value=0.4 Score=64.94 Aligned_cols=143 Identities=13% Similarity=0.196 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHHHHHH-HHHHCCCCcE
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPGWESE-INFWAPRIHK 1168 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~QW~eE-feKwaPsLkV 1168 (2693)
+-++|+.++...+. +.-.||....|+|||.+...++..+.+... ....+++++|+..-..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976654 556789999999999998888887765432 22357888998765443333 2211111100
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC------CcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR------PKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr------~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
....+. .+..-..|...+...... ..-....+++||||||-.+- ....+..+..+..
T Consensus 229 -----~~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQKK----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhhh----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 000000 001112233333221110 01123467999999998873 3334556677788
Q ss_pred cccccccccCCC
Q 000047 1243 SHRLLLTGTPLQ 1254 (2693)
Q Consensus 1243 ~~RLLLTGTPLQ 1254 (2693)
..||+|-|=|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 889999888754
No 203
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=0.24 Score=67.63 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...++.|...+.++. +. ||...-|+|||..+..|...|..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666666666555542 33 78899999999999888887754
No 204
>PHA03247 large tegument protein UL36; Provisional
Probab=92.89 E-value=21 Score=54.59 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC--CCCCCCCcccCCCCcccccccccccc
Q 000047 1737 PTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQLQQSKEVTPPSKRGRGRPRR--ADKSPVPVVLPAPSGTVKVEKDAMTG 1814 (2693)
Q Consensus 1737 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~rgrp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 1814 (2693)
+..+...+.+....++..+..-|+.+.++.++.......+|+....+++|.- ...+|.|+.+|++ +-.-.-+..+..
T Consensus 2711 ~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~~P~~p~ap~~P~~~~~p~apAPP~aPa~-~Pap~~~~~~~a 2789 (3151)
T PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA-GPPRRLTRPAVA 2789 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_pred ccccCCCCCCCCcccccccCCCCcccccccCCCCCCCCcccCCCCCCccCCCCCCCCCcCCCCccccCCCCcccccCccc
Q 000047 1815 QSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVPVAPGSQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKI 1894 (2693)
Q Consensus 1815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1894 (2693)
-...+.++.+........-........-.++...+.++....+......++.|..|.+..-.+-+.-.-..-.+|||
T Consensus 2790 p~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~~Pa~~~PPPp~~~P~aP~pP~~p~~P~~~~~g~~~~~~~~~r~p--- 2866 (3151)
T PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRP--- 2866 (3151)
T ss_pred CCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccccCC---
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcccCCCcccCCCCCCCCCCCCCC-cccCCcCccCCCCcceecccC
Q 000047 1895 GLVLPAASDDIPSPGPDPKTNEQPQSESLNPSGGESTATDGNVSSIPTAPVPDSVSPS-AVKGQSGTIDPSSAVAALNSE 1973 (2693)
Q Consensus 1895 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~tv~s~~~~~~p~~~~~s-a~~~~~~t~~~~~~~~~~~s~ 1973 (2693)
|..+....-+.| .......+-.- .++....-.+-.+..+++...+.+ ...+..+++-..+. -+
T Consensus 2867 ----P~~sp~~~ppaP-----~~PP~~~l~~P--~~~~~t~s~alP~~~~~~p~~Pp~p~Pp~P~p~~p~~ps-----p~ 2930 (3151)
T PHA03247 2867 ----PSRSPAAKPAAP-----ARPPVRRLARP--AVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ-----PQ 2930 (3151)
T ss_pred ----CCCCCCCCCCCC-----CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_pred CCCCCCCCCCCCCCCCCCccccceecccccccccCCCCCCCCCCccccCCCCcc
Q 000047 1974 LNTNLATAPPVPQPSPQFSSVSMQTKGQSRKTQSGGVTPRRRGKRQALGSPPIS 2027 (2693)
Q Consensus 1974 ~~~p~~s~~~~~q~~~~~ps~~~q~kgq~~k~q~g~~~prrrgkkq~~~~p~~p 2027 (2693)
+++|.|+..+.....++.|..+=+-+|----.+.|+-.|-|-----...+|+.|
T Consensus 2931 PP~ppPprP~pp~~P~~~p~~~~~p~~~~p~~~~~~~~~~~~~~pR~~~pp~~p 2984 (3151)
T PHA03247 2931 PPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccCcccCCCCCCC
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.83 E-value=0.26 Score=62.25 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH---------------HHH
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP---------------GWE 1156 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~---------------QW~ 1156 (2693)
--||.-++..|+. ..-.=..|...-|+|||+.|+|...+-....+..+.++|--|.--+. -|.
T Consensus 230 n~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 230 NAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 3488888876653 11122356778999999999877665444444444444433432222 243
Q ss_pred HHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHH
Q 000047 1157 SEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNAD 1236 (2693)
Q Consensus 1157 eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsra 1236 (2693)
.-|.. ++.++.-..... ...+...+......|--.|| ++. +.+.-.+||||||+++.-+. +-..
T Consensus 308 q~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~--IRG-------RSl~~~FiIIDEaQNLTphe--ikTi 371 (436)
T COG1875 308 QAIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTY--IRG-------RSLPDSFIIIDEAQNLTPHE--LKTI 371 (436)
T ss_pred HHHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeee--ecc-------cccccceEEEehhhccCHHH--HHHH
Confidence 33211 111110000000 11111111112222222222 111 12334789999999985432 3334
Q ss_pred HHhhcccccccccccCCC
Q 000047 1237 LKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1237 Lk~Lka~~RLLLTGTPLQ 1254 (2693)
+.+.-...+|.|||-|-|
T Consensus 372 ltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 372 LTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred HHhccCCCEEEEcCCHHH
Confidence 455566788999998844
No 206
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=0.36 Score=65.33 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.+++ + -||....|+|||..+..|+..|..
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555554444443 3 388999999999999888888765
No 207
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.26 Score=68.34 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcC--CCe-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ--LNG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++ ... ||..+.|+|||..+..|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 555555555554443 233 799999999999998888877643
No 208
>PLN03025 replication factor C subunit; Provisional
Probab=92.65 E-value=0.7 Score=57.73 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|.+.+.++..+..++ .+.||..+.|+|||-.+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554443332 35689999999999999888877753
No 209
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.29 Score=64.32 Aligned_cols=41 Identities=22% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLN---GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln---GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|..++..|...+.++.- .|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 66666666555555442 389999999999999888877654
No 210
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.32 E-value=0.3 Score=59.16 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+.||..+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999998777766543
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.19 E-value=2.6 Score=54.68 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCc--hHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSS--VLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtS--LL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
...++...+|.|||-++.-++.++.... .....+++|+=.. .-..|+ +..|+-.+.+-++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEe--------------
Confidence 3457889999999999877777665432 1223455554332 112222 45555322221111
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhcc--cccccccccCCCCCHHHHH
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQS--SHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lka--~~RLLLTGTPLQNnLeELw 1261 (2693)
+.++..+..... ...++++||||++.+...... .+...+..... ...|.|+||--++.+.+++
T Consensus 239 --------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 --------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 112232322111 113579999999998854322 22233333322 3558899999888898888
Q ss_pred HHhhhccCC-----------CCCChhHHHHHhcCcccCC
Q 000047 1262 ALLNFLLPN-----------IFNSSEDFSQWFNKPFESN 1289 (2693)
Q Consensus 1262 SLLnFL~P~-----------iF~S~k~F~e~F~kP~e~~ 1289 (2693)
.-+..+.+. -++..-.+...+..|+...
T Consensus 307 ~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 307 HQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYV 345 (388)
T ss_pred HHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEE
Confidence 877654332 1233345555666676543
No 212
>PRK04296 thymidine kinase; Provisional
Probab=91.75 E-value=0.3 Score=56.81 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP 1148 (2693)
.++..+||.|||..++.++..+... ...++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999998888776543 234677755
No 213
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=91.49 E-value=0.31 Score=68.13 Aligned_cols=109 Identities=24% Similarity=0.256 Sum_probs=76.4
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-----HHHHHHHHHCCCCcEEEEcCChHHHH
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-----GWESEINFWAPRIHKIVYCGPPEERR 1179 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-----QW~eEfeKwaPsLkVIvy~Gs~~eRk 1179 (2693)
+|+.+.+.+++...|+|||++|-..+.. ....+.+.-|+|...+. .|...|.+- .++.++...|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 5677889999999999999987433332 33445689999987763 477777666 4566666666544333
Q ss_pred HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1180 ~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
++ ...-+|+|.|++.+.... .--..++.|+||.|-+...
T Consensus 1230 kl------~~~~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1230 KL------LQKGQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred HH------hhhcceEEechhHHHHHh-----hhhhcceEeeehhhhhccc
Confidence 22 246799999999885421 2234689999999998753
No 214
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.44 E-value=0.8 Score=58.39 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|.+++..|...+..+. ..|+..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 6777888888877765 3578999999999999999888876
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.40 E-value=1.4 Score=50.20 Aligned_cols=142 Identities=15% Similarity=0.107 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH-HHCCCCcEEE
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN-FWAPRIHKIV 1170 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe-KwaPsLkVIv 1170 (2693)
|.+.+..|..++.++. . -|+..+.|.||+-.+.+++..++....... .|-. ... ...+. .-.|++..+-
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~--c~~-c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGE--CRS-CRRIEEGNHPDFIIIK 74 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SS--SHH-HHHHHTT-CTTEEEEE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCC--CHH-HHHHHhccCcceEEEe
Confidence 6777777877777653 2 388899999999999999998876554432 1111 111 11222 2233433331
Q ss_pred EcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhhccccccc
Q 000047 1171 YCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1171 y~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~Lka~~RLL 1247 (2693)
-.+.. -....+ ..+......... ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 75 ~~~~~~~i~i~~i-----------------r~i~~~~~~~~~-~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 75 PDKKKKSIKIDQI-----------------REIIEFLSLSPS-EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTTSSSSBSHHHH-----------------HHHHHHCTSS-T-TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccccchhhHHHH-----------------HHHHHHHHHHHh-cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 11110 000000 011111111111 24689999999999853 3334555555666677777
Q ss_pred ccccCCCCCHHHHH
Q 000047 1248 LTGTPLQNNLEELW 1261 (2693)
Q Consensus 1248 LTGTPLQNnLeELw 1261 (2693)
|+.+=..+-+.-+.
T Consensus 137 L~t~~~~~il~TI~ 150 (162)
T PF13177_consen 137 LITNNPSKILPTIR 150 (162)
T ss_dssp EEES-GGGS-HHHH
T ss_pred EEECChHHChHHHH
Confidence 77765544444443
No 216
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.25 E-value=0.26 Score=50.86 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
+...+|.-.+|+|||..+..++..+.... ..++++.+......|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 34568899999999999887776653222 346777776655544
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.25 E-value=18 Score=46.20 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHhh----cCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1089 GKLREYQMSGLRWLVSLYN----NQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~----n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+..+.+...++.++..... .+.+.+|..++|+|||..+.+++..++..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4667777777775543322 45677899999999999999999888754
No 218
>PHA03247 large tegument protein UL36; Provisional
Probab=91.13 E-value=71 Score=49.61 Aligned_cols=302 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccCCCChhhhhhcccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc----------------cccccccCCCCCCC
Q 000047 1719 AESSDSPKLKEEGLEKSLPTVVSSSAPAVYSTEPPAPLLPPPPPSLDPPQ----------------LQQSKEVTPPSKRG 1782 (2693)
Q Consensus 1719 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~p~~r~ 1782 (2693)
...........-......|...+..-+.+++..+|.+.+..+.++..+++ .....-..|+.-+.
T Consensus 2590 ~~pP~~~rPr~p~~~~p~p~~papp~P~PP~p~pP~PpPp~~~Ppa~~l~~~~~~a~p~~~~p~~~pa~~~~~~~~r~~p 2669 (3151)
T PHA03247 2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCcccCCCCcccccccccc-------ccccccCCCCCCCCcccccccCCCCcccccccCCCCCCCCccc
Q 000047 1783 RGRPRRADKSPVPVVLPAPSGTVKVEKDAM-------TGQSTSASASLPGSTTVSGVSGSAQHVMVGIAPSSQPTTAFVP 1855 (2693)
Q Consensus 1783 rgrp~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1855 (2693)
.+||......+.-+..+++-..|...+... +-........++...+...-.+.......++.+.....++...
T Consensus 2670 ~~~Pa~~s~p~~~p~~~a~~~pV~s~t~la~PPpp~P~P~P~p~~~~pa~P~ppgP~s~r~asP~~PlpPa~p~~p~~~~ 2749 (3151)
T PHA03247 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCC-----CCccCCCCCCCCCcCCCCccccCCCCcccccCcccccccCCCCCCCCCCCCCCCCCCCc---ccccCCCCC
Q 000047 1856 VAPG-----SQSASACPSTPMQPKGRGRRIQSGEQVPRRRGKKIGLVLPAASDDIPSPGPDPKTNEQP---QSESLNPSG 1927 (2693)
Q Consensus 1856 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---~~~~~~~~~ 1927 (2693)
.+.+ .-.+++.|+-|.+....+. .|-++..+.....++.+..-.....||.-+--. ......|++
T Consensus 2750 ~P~~p~ap~~P~~~~~p~apAPP~aPa~-------~Pap~~~~~~~ap~~~p~~saPsP~~Pa~p~aA~~~p~~~ppp~~ 2822 (3151)
T PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCC
Q ss_pred CCcccCCCcccCCCCCCCCCCCC--CC-cccCCcCccCCCCcceecccCCC-CCCCCCCCCCCCCCCCccccceeccccc
Q 000047 1928 GESTATDGNVSSIPTAPVPDSVS--PS-AVKGQSGTIDPSSAVAALNSELN-TNLATAPPVPQPSPQFSSVSMQTKGQSR 2003 (2693)
Q Consensus 1928 ~~~~~~~~tv~s~~~~~~p~~~~--~s-a~~~~~~t~~~~~~~~~~~s~~~-~p~~s~~~~~q~~~~~ps~~~q~kgq~~ 2003 (2693)
-......-.-+..|.+|.|+.-+ ++ ...+..-+.++|+.---..+-++ ||.|+..+...-..|-++.+.++.-+-.
T Consensus 2823 ~Pa~~~PPPp~~~P~aP~pP~~p~~P~~~~~g~~~~~~~~~r~pP~~sp~~~ppaP~~PP~~~l~~P~~~~~t~s~alP~ 2902 (3151)
T PHA03247 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred ccccCCCCCCCCCCccccCCCCcc
Q 000047 2004 KTQSGGVTPRRRGKRQALGSPPIS 2027 (2693)
Q Consensus 2004 k~q~g~~~prrrgkkq~~~~p~~p 2027 (2693)
-...-.++|-..=.++-+..+|.|
T Consensus 2903 ~~~~~p~~Pp~p~Pp~P~p~~p~~ 2926 (3151)
T PHA03247 2903 DQPERPPQPQAPPPPQPQPQPPPP 2926 (3151)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
No 219
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=90.85 E-value=0.69 Score=63.88 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCcE
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkV 1168 (2693)
.|-.-|++|+-..+.. .+..-|+.+ .|+|||-+...+|.-|...+ +.+|+.+=+ +.+.|..-.+..+.- .
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i--~- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGI--Y- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCc--c-
Confidence 5778899998665542 334446666 89999988888887776543 347777765 557777666655431 1
Q ss_pred EEEcCChHHHHHHHHh---------------hhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc
Q 000047 1169 IVYCGPPEERRRLFKE---------------KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke---------------~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI 1226 (2693)
++-.|....-....++ ........||.+|---+ ....|...+|||+|||||-.|
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEEEEcccccc
Confidence 2333433221111111 11234455666655433 234577778999999999876
No 220
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.83 E-value=0.59 Score=57.83 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+.++..+..++. ..+|..+.|+|||..+.+++.++..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445666666555554 6789999999999999888877653
No 221
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.69 E-value=1.2 Score=49.95 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccc--cCEEEEecCCC-Ccc
Q 000047 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQA--ADTVIIFDTDW-NPQ 1511 (2693)
Q Consensus 1460 TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQa--ADtVIiyDppW-NP~ 1511 (2693)
.+..+...+++.|.+...+ .+|+++....||||+.. +..||+.-.|+ ||.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 31 EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4444678999999764322 47888877999999986 78999999776 343
No 222
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.52 E-value=1.2 Score=60.83 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. . .|+..+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 6666666666665543 2 4789999999999998888887654
No 223
>PRK08181 transposase; Validated
Probab=90.40 E-value=1.8 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+...|...+.++......+.|.+|....|+|||..+.++...+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 3445666665554344567889999999999999999998877654
No 224
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=90.16 E-value=1.1 Score=50.38 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecc--cccccCccc--cCEEEEecCCC
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRA--GGVGVNLQA--ADTVIIFDTDW 1508 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrA--GGeGLNLQa--ADtVIiyDppW 1508 (2693)
.+..+++++|++.....-.+|+++.- ..|||||.. +..||+.-.|+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 35578999997643211236666665 899999987 78999998886
No 225
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=12 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=17.4
Q ss_pred cCCCccccccccccccCCCCcCCCCC
Q 000047 430 NSVPGTAMLRTMASRDTGKSSVSQTP 455 (2693)
Q Consensus 430 ~~~~~~~~~~~~~~~~~g~s~~~q~~ 455 (2693)
++.+-+..|-...|+.++.++|+...
T Consensus 113 Gsls~~qpL~~a~p~~m~~s~v~~~P 138 (1118)
T KOG1029|consen 113 GSLSYSQPLPPAAPRRMSSSPVVGPP 138 (1118)
T ss_pred CCcCcCCCCCcccccccCCCccCCCC
Confidence 34445666667788888888776644
No 226
>PRK06526 transposase; Provisional
Probab=89.76 E-value=0.9 Score=55.55 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
....|+. .+.|.+|....|+|||..+.++...+...
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3445664 46788999999999999999998877653
No 227
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.39 E-value=1.7 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.056 Sum_probs=22.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+.+.+|..+.|+|||..+.++..++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456688999999999999888776653
No 228
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.58 E-value=16 Score=50.09 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
.+|....|+|||..+.++..++....... .++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~-~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGT-RVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 57889999999999888888776532222 24444433333333322211 0
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhhc-ccccccccccC
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~Lk-a~~RLLLTGTP 1252 (2693)
.++.|.+ .+. .+++||||+.|.+.+... .++..+..+. ....|+||+.-
T Consensus 367 -----~~~~f~~-----~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 367 -----KGDSFRR-----RYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -----cHHHHHH-----Hhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0111211 111 368999999999976543 3444444433 34557777653
No 229
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.40 E-value=2.3 Score=58.35 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+..+. ..||....|+|||..+.+|+..|..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5566666655555443 3488999999999999888877654
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.29 E-value=3.7 Score=50.23 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=31.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
+.||....|+|||..+.+++.++...+ ..++++ .+..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHH
Confidence 568999999999999999999887542 335555 3456666554
No 231
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.78 E-value=2.4 Score=54.23 Aligned_cols=40 Identities=20% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..+...+..+. +. ||..+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 7777777766665542 33 7999999999999988887765
No 232
>PRK08116 hypothetical protein; Validated
Probab=87.55 E-value=3.7 Score=50.64 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~ 1153 (2693)
+.+.+|..++|+|||..+.+++.+++.. ..+++++.-..++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH
Confidence 3457899999999999999999888764 24455554333333
No 233
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.49 E-value=2.6 Score=53.39 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=40.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
..++|+|......+...+.+++ .-++....|+||+..|.+|+..++...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 3689999999999888776654 347889999999999999999887643
No 234
>CHL00181 cbbX CbbX; Provisional
Probab=87.32 E-value=0.72 Score=57.23 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEe
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVV 1147 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVV 1147 (2693)
+.+.+|..+.|+|||..|-++...+...+.. .++++.|.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 3456889999999999998887776554332 23444444
No 235
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.10 E-value=1.7 Score=59.27 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. .. |+...-|+|||-.+..|+..|...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6677777777666553 23 789999999999999888887653
No 236
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.98 E-value=1.3 Score=60.42 Aligned_cols=41 Identities=24% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. ..||....|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5555555655555543 3389999999999999888877653
No 237
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.93 E-value=2 Score=58.20 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. +. |+....|+|||-.+.+|+..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 6677777766655542 23 789999999999999888877643
No 238
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.88 E-value=2.5 Score=56.53 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. + -|+....|+|||-.|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666667766665432 2 3789999999999998888877543
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.83 E-value=2.2 Score=54.13 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.++|+|....+-++..-+-...-++..+.|+|||..|..++..++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 368999998888876411122346789999999999999999887643
No 240
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=86.81 E-value=4.2 Score=56.89 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=35.0
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHH-hh-cCC-CeE-EEcCCCCChHHHHHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSL-YN-NQL-NGI-LADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsL-y~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1135 (2693)
..|..|. -|+-|++-|..++.- +. ... ++| |...+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4455543 588888887655543 32 222 333 8999999999999888877654
No 241
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.66 E-value=0.72 Score=57.05 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEe
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVV 1147 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVV 1147 (2693)
+.+.+|..+.|+|||..|.++...+...+.. .++++.|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3467888999999999998887776554332 23444444
No 242
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.63 E-value=1.7 Score=57.92 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCCe---EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1095 QMSGLRWLVSLYNNQLNG---ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnG---ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|...+..|......+.-+ |+..+.|+|||..+.+|+..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 666666666655555433 8999999999999998888876543
No 243
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.51 E-value=2.4 Score=57.03 Aligned_cols=41 Identities=27% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLN---GILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln---GILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+..+.. -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55666666666555432 478999999999999888887764
No 244
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.42 E-value=3.5 Score=57.55 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
+..|-+-|++++..++. .+.-.+|....|+|||.+.-+++..+. .. ...+++++|+.....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~-~~--g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWE-AA--GYRVIGAALSGKAAE 410 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHH-hC--CCeEEEEeCcHHHHH
Confidence 45788999999987753 234568899999999988766654443 22 345788899876543
No 245
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.17 E-value=1.6 Score=54.62 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1094 YQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+|...|+-|...... ..+-++..+.|+|||-++++|...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 588888877665444 345578899999999999999988864
No 246
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.11 E-value=1.3 Score=58.53 Aligned_cols=23 Identities=35% Similarity=0.228 Sum_probs=19.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.||..+.|+|||..|-+++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999988877664
No 247
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.03 E-value=0.43 Score=54.47 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.1
Q ss_pred cCCccEEEEcHHHHHhccCCCccc--ccCccEEEEcccccccc
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPKLS--KIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~L~--kikWd~VIIDEAHRIKN 1228 (2693)
....+|||++|.+|....-+..+. ..+-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 356899999999998643332332 23457899999999854
No 248
>PF13173 AAA_14: AAA domain
Probab=85.98 E-value=2 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=26.8
Q ss_pred CccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
+-.+|||||+|++.+....+...+... ...++++||.-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccchH
Confidence 568899999999976544333333322 3568999998643
No 249
>PHA02533 17 large terminase protein; Provisional
Probab=85.95 E-value=9.2 Score=51.68 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=74.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHHHH---CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEINFW---AP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfeKw---aP 1164 (2693)
..|+|||...+.+|.. ++-.++.-.=..|||..+.+++.++..... ..-+++++|..-... -.+.++.. .|
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 5799999998887632 223356666789999998877766554333 234778888533221 11233222 22
Q ss_pred CCcEEEEcCChHHHHHHHHhhhh-cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH-hhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIV-HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~-~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~Lka 1242 (2693)
.+........ .+ ..+. ..+..|.+.|- +.........+++||||+|.+++.. .++.++. .+..
T Consensus 133 ~l~~~~i~~~--~~-----~~I~l~NGS~I~~lss-------~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~las 197 (534)
T PHA02533 133 DFLQPGIVEW--NK-----GSIELENGSKIGAYAS-------SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISS 197 (534)
T ss_pred HHhhcceeec--Cc-----cEEEeCCCCEEEEEeC-------CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHc
Confidence 2110000000 00 0010 11222212111 1123455567899999999987743 3333333 2322
Q ss_pred --cccccccccCC
Q 000047 1243 --SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 --~~RLLLTGTPL 1253 (2693)
..++++..||-
T Consensus 198 g~~~r~iiiSTp~ 210 (534)
T PHA02533 198 GRSSKIIITSTPN 210 (534)
T ss_pred CCCceEEEEECCC
Confidence 24678888884
No 250
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.87 E-value=3.4 Score=51.15 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=25.2
Q ss_pred CccEEEEcccccccccc--chHHHHHHhhcccccccccccCC
Q 000047 1214 QWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHRLLLTGTPL 1253 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~RLLLTGTPL 1253 (2693)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 35799999999983222 22333344455666788887653
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.29 E-value=5.6 Score=52.20 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.6
Q ss_pred CccEEEEccccccccccchHHHHHHhh------cccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHY------QSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~L------ka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
.+++||||-+-+..... .....|..+ .....|+|++|.-.+.+.++|..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 57999999987643322 222222222 22446889999988888888887776644
No 252
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.27 E-value=31 Score=47.46 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=6.3
Q ss_pred ccCcc-cccccCCC
Q 000047 1889 RRGKK-IGLVLPAA 1901 (2693)
Q Consensus 1889 ~~~~~-~~~~~~~~ 1901 (2693)
+|||| |.+-.|+.
T Consensus 1021 arGkkrq~GWFPa~ 1034 (1118)
T KOG1029|consen 1021 ARGKKRQIGWFPAE 1034 (1118)
T ss_pred hcCCccccccccHH
Confidence 45555 54444443
No 253
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=84.92 E-value=2.8 Score=56.03 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++. ..||..+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 6666666665544443 56899999999999998888777543
No 254
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.79 E-value=3.5 Score=56.43 Aligned_cols=42 Identities=19% Similarity=0.000 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. .-|+..+.|+|||..|.+++..|...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 6666666666665553 33889999999999999999888653
No 255
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.73 E-value=3.8 Score=51.63 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHHHh-hc--CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1091 LREYQMSGLRWLVSLY-NN--QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy-~n--~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
=|+.|++.|...+.-. .. ..+.+|..+.|+|||..+-.++..+.+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3777877665444332 22 2467889999999999988888776543
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.62 E-value=2.8 Score=49.46 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=68.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChH-HHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPE-ERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~-eRk~l~ke~i~~~kf 1191 (2693)
+|.-.+|.|||-++.-+++++... .. .+.+|+--.--.--.++++.|+-.+.+-+|.-... .-..+...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~~-~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~------- 74 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--GK-KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIARE------- 74 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHH-------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--cc-cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHH-------
Confidence 678899999999998888888655 33 35555543333333455555553333333322110 00011100
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHHHHHhh-cccccccccccCCCCCHHHHHHHhhhc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHY-QSSHRLLLTGTPLQNNLEELWALLNFL 1267 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~L-ka~~RLLLTGTPLQNnLeELwSLLnFL 1267 (2693)
.+ ..+...++|+|+||-+-+.-+... .+...+... .....|.|++|--+..+.++......+
T Consensus 75 --------~l------~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 75 --------AL------EKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp --------HH------HHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred --------HH------HHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 00 112334579999999977643322 222222333 334557788888666666555554444
No 257
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=84.61 E-value=5.7 Score=48.87 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|.+.+..+..+..++ .+.+|..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344444444443333 2478999999999998877776653
No 258
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=84.24 E-value=1.4 Score=53.23 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=56.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-+.+=+++.++..+. +=+.+|||..++.+-..-+...+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 467999999999999863 45678899999999999988766666654332 34689999999988776665443
No 259
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.23 E-value=1.7 Score=56.30 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC------------CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL------------NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l------------nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|..++..|...+..+. .-|+....|+|||..+.+++..++..
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 6666666665555432 24688999999999999988877654
No 260
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.05 E-value=4.3 Score=54.12 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcC---CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ---LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~---lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+ ..-|+....|+|||-.|..++..+...
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 555555555554443 345899999999999988777766543
No 261
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.00 E-value=3.7 Score=49.50 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1096 leGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..++.++..+.. .....+|..+.|+|||-.+.++..++..
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334555544322 2245689999999999888777766653
No 262
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.99 E-value=3.5 Score=55.47 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCC--e-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQLN--G-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln--G-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++.- . |+..+.|+|||-.+.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 55555555555544432 2 789999999999998888887643
No 263
>PRK08727 hypothetical protein; Validated
Probab=83.94 E-value=6.4 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+|....|+|||-.+.++...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999999888888776543
No 264
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.87 E-value=5.6 Score=52.31 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcC----CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1094 YQMSGLRWLVSLYNNQ----LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~----lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
....++.++..+..+. ...+|..+.|+|||..+-++..++...
T Consensus 129 ~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 129 SNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred CcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3444555555543321 235789999999999998888877654
No 265
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.73 E-value=3.2 Score=56.36 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCCe---EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLNG---ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnG---ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+.+|...+.++.-+ ||..+.|+|||..+..++.++..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 777777777766655333 78999999999999988877753
No 266
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.67 E-value=3.6 Score=56.04 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+..+. .-||....|+|||..+..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 5555555655555443 35888999999999999888887654
No 267
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.64 E-value=8 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+|....|+|||..+.++..++.+.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4789999999999998888877654
No 268
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.59 E-value=3.3 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHH
Q 000047 1093 EYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~ 1132 (2693)
+.+..++..+......+. ..+|..+.|+|||..+-.++..
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 344556666655444443 4678999999999877655443
No 269
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=83.56 E-value=4.9 Score=57.53 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|-+-|.++|..++. .+.-.+|.-.-|+|||.+. ..+..+++.. ...+++++|+.....-..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc----
Confidence 45799999999987764 2234678889999999874 4444444432 2347888888765432221 10
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRL 1246 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~RL 1246 (2693)
|.... |...+..............++||||||-.+-.. .+.+.|... ....+|
T Consensus 411 -----Gi~a~-------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~--~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIASR-------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR--QLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccchh-------------------hHHHHHhhhcccccccccCcEEEEECcccCCHH--HHHHHHHhhhhCCCEE
Confidence 10000 011110000011112235689999999977432 233444433 456789
Q ss_pred cccccCCC
Q 000047 1247 LLTGTPLQ 1254 (2693)
Q Consensus 1247 LLTGTPLQ 1254 (2693)
+|.|=|-|
T Consensus 465 VLVGD~~Q 472 (988)
T PRK13889 465 VLVGDPQQ 472 (988)
T ss_pred EEECCHHH
Confidence 99887744
No 270
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.29 E-value=3.2 Score=53.38 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|.++...+...+.+++ .-|+....|+||+..+.+|+.+++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 7777777777766653 347889999999999999999998654
No 271
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.10 E-value=4.1 Score=54.77 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..+...+.++. .. |+..+.|+|||..|-.|+..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666666666555432 33 79999999999999888877754
No 272
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.99 E-value=1e+02 Score=42.43 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=14.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH
Q 000047 983 INDVEGYLRMVQDAKSDRVNKLLKET 1008 (2693)
Q Consensus 983 ~~DeE~Y~~ll~e~K~~rL~~LL~QT 1008 (2693)
..+.|+.++.+.+....++..+-.++
T Consensus 933 qq~le~~lkrm~~~~k~ema~iErec 958 (1187)
T KOG0579|consen 933 QQNLEAMLKRMAEKHKEEMASIEREC 958 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34456666666655555555554443
No 273
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=82.93 E-value=9.5 Score=53.05 Aligned_cols=138 Identities=16% Similarity=0.084 Sum_probs=72.2
Q ss_pred HHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCC-CEEEEe-cCchHHH-----HHHHHHHHCCCCcEEEEcCCh
Q 000047 1103 VSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRG-PFLVVV-PSSVLPG-----WESEINFWAPRIHKIVYCGPP 1175 (2693)
Q Consensus 1103 lsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~g-P~LIVV-PtSLL~Q-----W~eEfeKwaPsLkVIvy~Gs~ 1175 (2693)
+.+...+.-.|+--++|+|||.|...+|+.-+....... .-.+|| |.....+ ..+|=..-.. .++.|.
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g--~tvgy~--- 461 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG--ETCGYN--- 461 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc--cccccc---
Confidence 344455677788899999999998877765444332221 112333 3333333 2222111110 111111
Q ss_pred HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh----ccccccccccc
Q 000047 1176 EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY----QSSHRLLLTGT 1251 (2693)
Q Consensus 1176 ~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L----ka~~RLLLTGT 1251 (2693)
-.+ ........--++.+|.+.+.+.... ......++|+||.|..--..--+...++.+ +.-+.+|+++|
T Consensus 462 vRf----~Sa~prpyg~i~fctvgvllr~~e~---glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsat 534 (1282)
T KOG0921|consen 462 VRF----DSATPRPYGSIMFCTVGVLLRMMEN---GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSAT 534 (1282)
T ss_pred ccc----cccccccccceeeeccchhhhhhhh---cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcc
Confidence 111 0111112234667888877765432 334567899999998755444455555544 34455788888
Q ss_pred C
Q 000047 1252 P 1252 (2693)
Q Consensus 1252 P 1252 (2693)
=
T Consensus 535 I 535 (1282)
T KOG0921|consen 535 I 535 (1282)
T ss_pred c
Confidence 5
No 274
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=82.80 E-value=1 Score=60.69 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=96.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHH-HHHHHH---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWE-SEINFW---A 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~-eEfeKw---a 1163 (2693)
....|||.+-+..|..-. -....+.-..-+|||.+.+.++.|.+.. ..+|+|+|.|+.-. ..|. ..|... .
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478899999887665311 2345677778899999888888887654 45789999998554 5564 344433 3
Q ss_pred CCCcEEEEcC-ChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc----cccchHHH---
Q 000047 1164 PRIHKIVYCG-PPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK----NASCKLNA--- 1235 (2693)
Q Consensus 1164 PsLkVIvy~G-s~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK----N~sSKlsr--- 1235 (2693)
|.++-.+... .......+....+ .+-.+.+.... ....|.....++||+||..++- +.......
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f--~gg~l~~~ga~------S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRF--PGGFLYLVGAN------SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheec--CCCEEEEEeCC------CCcccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 4333222210 0001111111111 12223333322 2345777889999999999983 23333333
Q ss_pred HHHhhcccccccccccCCCCCHHHHHHHh
Q 000047 1236 DLKHYQSSHRLLLTGTPLQNNLEELWALL 1264 (2693)
Q Consensus 1236 aLk~Lka~~RLLLTGTPLQNnLeELwSLL 1264 (2693)
....|....++++..||.......++.++
T Consensus 163 R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 163 RTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 33455567889999999877555555544
No 275
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=82.21 E-value=2.3 Score=52.24 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=60.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
-+|..+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588899999999999999998875543322111111 222222233444433222221111 0
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEcccccccc-ccchHHHHHHhhccccccccccc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGT 1251 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN-~sSKlsraLk~Lka~~RLLLTGT 1251 (2693)
++++.-+..+..... ..-....|.+||||||+.|.- ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~-~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLS-ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhc-cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 011111111111100 011135799999999999954 22233344444566667777654
No 276
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.20 E-value=7.5 Score=52.14 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=73.8
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+||.+....++......|.++||.+.....+..+.+.|.. .|..+..++|.++..+|.+...+...++.+ |+|.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 458999998888888888899999999999988888877764 477899999999999998887777666554 5777
Q ss_pred ecccccccCccccCEEEEec
Q 000047 1486 IRAGGVGVNLQAADTVIIFD 1505 (2693)
Q Consensus 1486 TrAGGeGLNLQaADtVIiyD 1505 (2693)
|+.+= =+-+...+.||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 76532 24466677777655
No 277
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.18 E-value=4.8 Score=54.72 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|.....++. .. |+..+-|+|||..+..|+.++...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 5555566655544442 33 788999999999999888887643
No 278
>PF13245 AAA_19: Part of AAA domain
Probab=81.95 E-value=4.1 Score=41.42 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=34.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh-cCCCCCEEEEecCchHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET-KNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~-k~~~gP~LIVVPtSLL~Q 1154 (2693)
.-.++-...|+|||.+++.++.+++.. ......+||++|+....+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 335668899999999999999998853 122557999999866544
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.83 E-value=28 Score=47.22 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+...+|...+|.|||..+..|+.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4445677889999999988887766554
No 280
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=81.27 E-value=17 Score=48.15 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred ccHHHHHHH-HHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1409 CGKLEMLDR-LLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1409 SgKLelLde-LL~kLk--atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+++.+.+ +|+.+. ....++|||...=-..-.|..+|...++.|+.++--++..+-.++-..|-.+..+ ++|++
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEE
Confidence 346776665 777776 3457899998765555568899999999999999999999999999999877654 56666
Q ss_pred ecccc-cccCccccCEEEEecCCCCccchhhhhhhhccc
Q 000047 1486 IRAGG-VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1486 TrAGG-eGLNLQaADtVIiyDppWNP~~diQAIGRAHRI 1523 (2693)
-++.= .=..|..+.+||+|.+|-+|.-|..-+.-...-
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~ 396 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDES 396 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccc
Confidence 44432 234467799999999999999998877655443
No 281
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=81.24 E-value=2e+02 Score=40.28 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=28.8
Q ss_pred CcChhhHhhHHHHHHhccCcHHHHHHHHHHHHHhhc
Q 000047 845 SEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFK 880 (2693)
Q Consensus 845 ~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~vl~~~~~ 880 (2693)
..+.-.|+|-.|-|++=..+..|+-.|.-+....++
T Consensus 798 ~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 798 GALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred hhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334456899999999999999999999987765443
No 282
>PRK06921 hypothetical protein; Provisional
Probab=81.14 E-value=6 Score=48.86 Aligned_cols=28 Identities=29% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+.+.+|..++|+|||..+.+++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567899999999999999998888754
No 283
>PRK04195 replication factor C large subunit; Provisional
Probab=81.14 E-value=7.9 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
....||..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999998887666543
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.95 E-value=5.4 Score=54.55 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. .-|+..+.|+|||..|..|+..+..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4445555555554442 3467999999999999988887764
No 285
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.87 E-value=23 Score=49.27 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHH----HHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVM----EDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDIL----ed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||.....-.+-.....|.++||.+.....+..+ ..+|...|+++..++|+++..+|.++++....++.+ +|
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 46777654443333345688999999988776554 455555689999999999999999999999777665 56
Q ss_pred eeecc-cccccCccccCEEEE
Q 000047 1484 LSIRA-GGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrA-GGeGLNLQaADtVIi 1503 (2693)
+.|.+ ....+.+.....||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 66653 444567778887776
No 286
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.73 E-value=7.6 Score=49.60 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHH-HHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1092 REYQMSGLRWLV-SLYN--NQLNGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1092 RPYQleGL~WLl-sLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|+-+++-+.-.+ .... ...+.+|....|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 555555544333 2222 235678999999999999888877765443
No 287
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.56 E-value=4.6 Score=51.33 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.++|+|......+...+.+++ .+ |+..+.|+||+..|.+++.+++...
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 357888888888888877653 33 6789999999999999999888654
No 288
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.31 E-value=2.6 Score=51.04 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+-.+-|++...|+|||-.+.+++..|+.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3456799999999999999988888764
No 289
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.09 E-value=10 Score=52.56 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=74.7
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
..+||......++......|.++||.+.....+..+.+.|.. .|..+..++|+++..+|.+...+...++.+ |+|.
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 347899888887777777789999999999988888877764 478899999999999998888887666655 6777
Q ss_pred ecccccccCccccCEEEEecC
Q 000047 1486 IRAGGVGVNLQAADTVIIFDT 1506 (2693)
Q Consensus 1486 TrAGGeGLNLQaADtVIiyDp 1506 (2693)
|+..- =+.+.+...||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 77432 255667777777654
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=79.75 E-value=18 Score=47.79 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=25.7
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
..+|..+.|+|||..+-++..++.+..... .++.|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-~v~yi~ 167 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYIT 167 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEE
Confidence 357899999999999988888776544332 244444
No 291
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=79.72 E-value=7.5 Score=51.43 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
.+|..++|+|||..+-++..++....... .++.|.....+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~-~v~yv~~~~f~ 183 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDL-KVSYMSGDEFA 183 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEEHHHHH
Confidence 56899999999998877777665543322 34444443333
No 292
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=79.69 E-value=6.4 Score=49.85 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEE
Q 000047 1093 EYQMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKI 1169 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVI 1169 (2693)
-.|...+..+...+..+. +. |+..+-|+|||..+..++..++........ |-........-.....|++..+
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEe
Confidence 346667777766665542 33 889999999999999988887654322111 1112222222233445666555
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-cchHHHHHHhhcccccccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-SCKLNADLKHYQSSHRLLL 1248 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-sSKlsraLk~Lka~~RLLL 1248 (2693)
...|..-....+. . +........ ..-.|+++||||+|+|... ...+.+.|........++|
T Consensus 84 ~~~~~~i~id~ir-~----------------l~~~~~~~~-~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 84 APDGQSIKKDQIR-Y----------------LKEEFSKSG-VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred ccccccCCHHHHH-H----------------HHHHHhhCC-cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 4443211111110 0 000000001 1236899999999999532 2223333333344555666
Q ss_pred ccc
Q 000047 1249 TGT 1251 (2693)
Q Consensus 1249 TGT 1251 (2693)
+.+
T Consensus 146 ~t~ 148 (329)
T PRK08058 146 LTE 148 (329)
T ss_pred EeC
Confidence 655
No 293
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=79.49 E-value=13 Score=51.19 Aligned_cols=148 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHH----HH-----HH
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESE----IN-----FW 1162 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eE----fe-----Kw 1162 (2693)
|+=.+-|..++..|++....++++ =|.|||..+..++.+++...+ ..++|.+|..- ...-..+ ++ .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 445566778888888888887776 899999998877776664322 34888888432 2222222 22 57
Q ss_pred CCCCcEEE-EcCChHHHHHHHH-hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1163 APRIHKIV-YCGPPEERRRLFK-EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1163 aPsLkVIv-y~Gs~~eRk~l~k-e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+|....++ +.|..... .+.. .....+.-.+...+ + .........+++||||||+-+.. ..+...+-.+
T Consensus 249 fp~~~~iv~vkgg~E~I-~f~~p~gak~G~sti~F~A-----r--s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l 318 (752)
T PHA03333 249 FPEEFKIVTLKGTDENL-EYISDPAAKEGKTTAHFLA-----S--SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLM 318 (752)
T ss_pred cCCCceEEEeeCCeeEE-EEecCcccccCcceeEEec-----c--cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHH
Confidence 76553222 22211100 0000 00000001111111 1 11234445789999999999965 2222222222
Q ss_pred c-ccccccccccCC
Q 000047 1241 Q-SSHRLLLTGTPL 1253 (2693)
Q Consensus 1241 k-a~~RLLLTGTPL 1253 (2693)
. ...++++.-+|.
T Consensus 319 ~~~~~k~IiISS~~ 332 (752)
T PHA03333 319 AVKGTKQIHISSPV 332 (752)
T ss_pred ccCCCceEEEeCCC
Confidence 2 355666666663
No 294
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.38 E-value=11 Score=49.13 Aligned_cols=41 Identities=17% Similarity=0.012 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. .-|+..+.|+|||..|.+++.++..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666666655542 2478899999999999999887764
No 295
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.21 E-value=14 Score=50.35 Aligned_cols=42 Identities=14% Similarity=0.000 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcC--CC-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQ--LN-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--ln-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++ .+ -|+..+.|+|||..+-.|+..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 555555555554443 23 3679999999999998888776543
No 296
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=78.67 E-value=7.6 Score=49.52 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.+||||....+.+...+..++ .-+++.+-|+||+..|.+|+.+++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478999999998888877654 236889999999999999999988753
No 297
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.42 E-value=15 Score=46.29 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhh----cCCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1083 PTCLQGGKLREYQMSGLRWLVSLYN----NQLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1083 P~~L~ggkLRPYQleGL~WLlsLy~----n~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
|..+....-++..++.+.-++.... ...+.+|..+.|+|||..+.+++..+
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3333333344445554443333221 12356899999999999887666544
No 298
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=78.15 E-value=21 Score=51.59 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHhhhhheeeccCCC-----CcceeeeeeccCCCCCC
Q 000047 461 PFKEQQLKQLRAQCLVFLAFRNGLV-----PKKLHLEIALGNIFPRE 502 (2693)
Q Consensus 461 PfkeqQLkQLrAQCLVFLaFRN~l~-----PkKlhLeiAlg~~~~~e 502 (2693)
+|.+.++..+=.|.|.-|+|=-.+- ..-+|-+|-..|+|=..
T Consensus 114 ~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s 160 (1021)
T PTZ00266 114 KIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLST 160 (1021)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeec
Confidence 5778888777777766666632221 23578888888877544
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=78.09 E-value=16 Score=46.98 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=23.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP 1148 (2693)
-.++....|.|||.++..++.++... ...++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 34678899999999887777666432 223555543
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.88 E-value=13 Score=48.26 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=64.1
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhh
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAP--RIHKIVYCGPPEERRRLFKEK 1185 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~ 1185 (2693)
.+...+|...+|.|||.++..|+.++....+. ..+.+|+-......=.+.+..|+. ++.+..........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~------- 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------- 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-------
Confidence 34556788999999999998888876543222 234555433322122233333331 12222111111100
Q ss_pred hhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc-----ccccccccccCCCCCHHHH
Q 000047 1186 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ-----SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1186 i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk-----a~~RLLLTGTPLQNnLeEL 1260 (2693)
.... ...+.++|+||.+=+.-.. ..+...+..+. ....|.|++|--...+.++
T Consensus 208 --------------~~l~-------~l~~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 208 --------------LALA-------ELRNKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred --------------HHHH-------HhcCCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 0011 1124589999999654221 22333444331 2346788999877777766
Q ss_pred HH
Q 000047 1261 WA 1262 (2693)
Q Consensus 1261 wS 1262 (2693)
+.
T Consensus 266 i~ 267 (374)
T PRK14722 266 VQ 267 (374)
T ss_pred HH
Confidence 44
No 301
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=77.86 E-value=7.4 Score=49.45 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.++|+|......+...+.+++ .-++....|+||+..|..|+.+++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578999999888888776654 347889999999999999999888654
No 302
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=77.32 E-value=18 Score=49.76 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHhhcCCCe--EEEcCCC
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNG--ILADEMG 1119 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnG--ILADEMG 1119 (2693)
+...+.+.|+.+..+.++..|- +|-.+-+
T Consensus 205 ~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~ 235 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNNKFGLVLVLRRERS 235 (1102)
T ss_pred HHHHHHHHHHHHHHHhccccceeeeecCCcc
Confidence 3445677777777766665554 3444443
No 303
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.30 E-value=6.4 Score=44.65 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=36.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+|+.+.|+|||..++.++...... ..++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 3688999999999999988877643 34588888777676666655544
No 304
>PRK04132 replication factor C small subunit; Provisional
Probab=76.91 E-value=63 Score=46.24 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=32.8
Q ss_pred CccEEEEcccccccc-ccchHHHHHHhhcccccccccccCCCCCHHHHHH
Q 000047 1214 QWHYIIIDEGHRIKN-ASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN-~sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwS 1262 (2693)
+|.+|||||||+|.. ....+.+.|..+....+++|+.++...-+.-|.+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh
Confidence 578999999999953 2333444445555677888888876555544444
No 305
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=76.87 E-value=5.3 Score=48.47 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchH
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL 1152 (2693)
|-+-|.++|++ . ....++-..-|+|||.+.+.-+.+++..+ .....+|+|+.+...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 44678888876 2 44556666799999999999999998876 344569999998764
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.52 E-value=56 Score=43.43 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=31.9
Q ss_pred ccCccEEEEccccccccccchH---HHHHHhh----cccccccccccCCCCCHHHHHHHhhhc
Q 000047 1212 KIQWHYIIIDEGHRIKNASCKL---NADLKHY----QSSHRLLLTGTPLQNNLEELWALLNFL 1267 (2693)
Q Consensus 1212 kikWd~VIIDEAHRIKN~sSKl---sraLk~L----ka~~RLLLTGTPLQNnLeELwSLLnFL 1267 (2693)
...+++||||=+-+.-.....+ ...+..+ .....|.|++|--+..+.+++..+..+
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~ 359 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESL 359 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCC
Confidence 3467999999776653222222 1222222 123457888888777777766655544
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=76.29 E-value=11 Score=47.62 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=26.8
Q ss_pred cccccCccEEEEccccccc-cccchHHHHHH---hhccc--ccccccccC
Q 000047 1209 KLSKIQWHYIIIDEGHRIK-NASCKLNADLK---HYQSS--HRLLLTGTP 1252 (2693)
Q Consensus 1209 ~L~kikWd~VIIDEAHRIK-N~sSKlsraLk---~Lka~--~RLLLTGTP 1252 (2693)
.|..++..+|||||.|++. +...+....+. .+... --+.+.||+
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4667788999999999964 34444443333 33222 225566776
No 308
>PRK12377 putative replication protein; Provisional
Probab=75.90 E-value=23 Score=43.75 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+.+|...+|+|||..+.+++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 456888999999999999999888753
No 309
>PRK06893 DNA replication initiation factor; Validated
Probab=75.56 E-value=13 Score=44.80 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+|....|+|||-.+.++...+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999888888776554
No 310
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=75.46 E-value=5.4 Score=54.13 Aligned_cols=42 Identities=21% Similarity=0.062 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCCC---eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQLN---GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~ln---GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..|...+.++.- -|+..+.|+|||..+.+++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 55555555555444432 3799999999999999888877643
No 311
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=75.18 E-value=7.8 Score=42.06 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=24.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
+|....|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 57788999999999888877754 34456666554
No 312
>PRK13342 recombination factor protein RarA; Reviewed
Probab=74.63 E-value=9.9 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=17.2
Q ss_pred CeEEEcCCCCChHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALIC 1131 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa 1131 (2693)
..||..+.|+|||..+-++..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999988766654
No 313
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.00 E-value=8.4 Score=51.48 Aligned_cols=40 Identities=30% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..+...+.++. ++ |+..+.|+|||..+..++..+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6666777766665543 33 6799999999998887776664
No 314
>PRK10865 protein disaggregation chaperone; Provisional
Probab=73.85 E-value=10 Score=53.99 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHh--hcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLY--NNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy--~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|..-|+.++..+ ....|.||..+.|+|||..+-+++..+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 344477776633 3345789999999999999887777654
No 315
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=73.65 E-value=4.3 Score=54.83 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=63.7
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-----HHHHHHHHCCCCcEEEEcCChHHHH
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-----WESEINFWAPRIHKIVYCGPPEERR 1179 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-----W~eEfeKwaPsLkVIvy~Gs~~eRk 1179 (2693)
.++++-.+.|. +=--|||+..+.+|..++..-.+.. +..|+--.-+.+ ....+.+|+|.-+++...+..-
T Consensus 199 ~FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~-IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI--- 273 (668)
T PHA03372 199 IFKQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGIS-IGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVI--- 273 (668)
T ss_pred HhhccceEEEe-cccCCceehHHHHHHHHHHhhcCce-EEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEE---
Confidence 34445555554 4678999999999998887544443 677776433333 3344579999766543322100
Q ss_pred HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1180 ~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
.+. ....+--++. ........++...|++++|||||-++-
T Consensus 274 -~~s--~pg~Kst~~f------asc~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 274 -SID--HRGAKSTALF------ASCYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred -EEe--cCCCcceeee------hhhccCccccCCCCCEEEEehhhccCH
Confidence 000 0001111111 222344567778899999999999964
No 316
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=73.41 E-value=65 Score=44.69 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=66.1
Q ss_pred ccHHH-HHHHHHHHhhcCCCeEEEEEcch----HHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1409 CGKLE-MLDRLLPKLKATDHRVLFFSTMT----RLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1409 SgKLe-lLdeLL~kLkatGhKVLIFSQft----~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
|||.- ++.-++.- ...|..+.+-...- ++.+-+.++|...|+++..|+|+++...|.+++....+++.+ ++
T Consensus 294 SGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 294 SGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 55543 33333333 44566666665443 456678888988999999999999999999999999888877 78
Q ss_pred eeecccc-cccCccccCEEEE
Q 000047 1484 LSIRAGG-VGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrAGG-eGLNLQaADtVIi 1503 (2693)
|-|.|+= ..+++.+.-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 8888763 4666666666665
No 317
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.26 E-value=17 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+...+|..+.|+|||..+.++..++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999988777766543
No 318
>PRK05642 DNA replication initiation factor; Validated
Probab=72.84 E-value=17 Score=43.92 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=24.6
Q ss_pred ccEEEEcccccccccc---chHHHHHHhhc-cccccccccc
Q 000047 1215 WHYIIIDEGHRIKNAS---CKLNADLKHYQ-SSHRLLLTGT 1251 (2693)
Q Consensus 1215 Wd~VIIDEAHRIKN~s---SKlsraLk~Lk-a~~RLLLTGT 1251 (2693)
.+++|||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4789999999886533 23555554443 3566888876
No 319
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.52 E-value=11 Score=40.06 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=25.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
+|.-+.|+|||..+-.++.++ ..+++.|....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccccc
Confidence 677889999998887666654 245666666665533
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.33 E-value=78 Score=41.78 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=28.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-C---chHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-S---SVLPGWESEI 1159 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-t---SLL~QW~eEf 1159 (2693)
..+|+...|+|||-++..++.++...+ ..+.+|+- + ..+.||..-.
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHh
Confidence 346788899999999888887765432 23444443 2 2256775433
No 321
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.88 E-value=13 Score=49.26 Aligned_cols=25 Identities=32% Similarity=0.173 Sum_probs=20.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+|..+.|+|||-.+-++..++..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3578899999999999888887765
No 322
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=71.86 E-value=16 Score=46.90 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHhhcCCCe-EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNG-ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnG-ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
+||+|...-+-+..+.++-..+ ++....|+|||..|..|+..++...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5788888888777763332334 5789999999999999999887654
No 323
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=71.76 E-value=32 Score=41.35 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.9
Q ss_pred CccEEEEcccccccccc---chHHHHHHhh-cccccccccc
Q 000047 1214 QWHYIIIDEGHRIKNAS---CKLNADLKHY-QSSHRLLLTG 1250 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~s---SKlsraLk~L-ka~~RLLLTG 1250 (2693)
.++++|||..|.+.+.. ..++..+..+ ....+|++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57999999999998754 2344444443 3455677776
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.38 E-value=29 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=19.8
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...|...+|+|||..+..|+.++..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467888999999998888777653
No 325
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=71.21 E-value=9.5 Score=50.51 Aligned_cols=42 Identities=17% Similarity=0.007 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+.++...+..+. + -|+..+.|+|||..+.+++.++...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 7777888877766543 2 4788999999999999998887643
No 326
>PRK09183 transposase/IS protein; Provisional
Probab=71.02 E-value=9.7 Score=46.85 Aligned_cols=28 Identities=32% Similarity=0.267 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+.+.+|..+.|+|||..+.++...+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4778899999999999999888665543
No 327
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.78 E-value=12 Score=51.46 Aligned_cols=41 Identities=15% Similarity=-0.006 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.++. .-|+...-|+|||..|..|+..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 7777777777665542 2478999999999999988887765
No 328
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=70.71 E-value=6.4 Score=53.81 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=57.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHH----HHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESE----INFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eE----feKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
.++.-.==-|||.....+|..++...... .++++++-.- ...-.+| +++|++...+....|. .+ .-..
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~~Gi-~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~i~f 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATFRGI-KIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-SFSF 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhCCCC-EEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-EEEe
Confidence 34555567899998887777666443333 3788888533 3334444 4568765443333331 00 0001
Q ss_pred hcCC-ccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1187 VHQK-FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1187 ~~~k-fdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
..+. -.+.+.|- .....++...++++||||||-++.
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH
Confidence 1111 12222211 123456667899999999999975
No 329
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=70.56 E-value=10 Score=52.83 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|..+++.|...+..+. . .|+..+.|+|||..|-+++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5555555555554432 2 3789999999999998888777643
No 330
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=69.57 E-value=14 Score=51.66 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1096 leGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+-+..++..+. ...|.||.-+.|+|||..+-+++..+..
T Consensus 188 ~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 188 EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 333334544332 3457899999999999998888776654
No 331
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=69.35 E-value=25 Score=44.61 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
|..++..+...+.++. .-++..+.|.||+..|.+++.+++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 7777777777766653 447889999999999999999887643
No 332
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=69.34 E-value=17 Score=49.86 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=8.2
Q ss_pred hhchhhhhhhhccc
Q 000047 2155 ALSNMKAVERVNIQ 2168 (2693)
Q Consensus 2155 ~~~~~~~~~~~~~~ 2168 (2693)
-+.-+++.|+|++-
T Consensus 784 ilFKl~fse~vnni 797 (1102)
T KOG1924|consen 784 ILFKLTFSEQVNNI 797 (1102)
T ss_pred HHHHhhHHHHHhhc
Confidence 34556666766654
No 333
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=69.09 E-value=46 Score=43.47 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=74.0
Q ss_pred CcchHHHHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsL 1166 (2693)
.--|++|...+.-++.-... .-..+|....|+|||..+-.++..+ +.+...|++... ..|+.=+++..-..
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ec-ft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVEC-FTYAILLEKILNKS 80 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHh-ccHHHHHHHHHHHh
Confidence 34688999888766541111 0123788899999998876665443 445666766432 23333333222111
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-----c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-----Q 1241 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-----k 1241 (2693)
...-+.|...+-. .+. ..+|.-++..|+...+ ...--+||+|-|+.++...+.+...+.++ .
T Consensus 81 ~~~d~dg~~~~~~---~en--~~d~i~~l~q~~~~t~--------~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 81 QLADKDGDKVEGD---AEN--FSDFIYLLVQWPAATN--------RDQKVFLILDNADALRDMDAILLQCLFRLYELLNE 147 (438)
T ss_pred ccCCCchhhhhhH---HHH--HHHHHHHHHhhHHhhc--------cCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC
Confidence 1111112111100 000 0011100111111111 13457899999999999888777776554 2
Q ss_pred ccccccccccCC
Q 000047 1242 SSHRLLLTGTPL 1253 (2693)
Q Consensus 1242 a~~RLLLTGTPL 1253 (2693)
..-+|+|+.++.
T Consensus 148 ~~i~iils~~~~ 159 (438)
T KOG2543|consen 148 PTIVIILSAPSC 159 (438)
T ss_pred CceEEEEecccc
Confidence 345678888774
No 334
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=69.07 E-value=4.4 Score=56.97 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=73.0
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-----HHHHHHHHHHCCCCcEEEEcCChHHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-----PGWESEINFWAPRIHKIVYCGPPEERRR 1180 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-----~QW~eEfeKwaPsLkVIvy~Gs~~eRk~ 1180 (2693)
|.-..+.++.+.+|.|||+.+-..+.+.+...+. +.+.+|+|..-+ ..|...+. .++++++-..|.....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~- 1015 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDV- 1015 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCCh-
Confidence 4445577889999999999886555555544444 568999996433 34765443 34677777777543221
Q ss_pred HHHhhhhcCCccEEEEcHHHHHhccCCCc--ccccCccEEEEccccccccc
Q 000047 1181 LFKEKIVHQKFNVLLTTYEYLMNKHDRPK--LSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1181 l~ke~i~~~kfdVVITTYE~Lik~~Dr~~--L~kikWd~VIIDEAHRIKN~ 1229 (2693)
......+++|||++.......... -.-..+.++|+||.|.++..
T Consensus 1016 -----~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 -----KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -----hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 112467899999998754321101 11124567999999998654
No 335
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=69.04 E-value=19 Score=49.35 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...+..+...+.++. .-|+..+.|+|||..|.+++..+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5556666666554432 24789999999999999988887643
No 336
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=68.57 E-value=47 Score=42.50 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+..........+|..|.|+||+..|-+ |... .....+||+.|-=..+-..|
T Consensus 13 ~~~~~~a~~~~pVLI~GE~GtGK~~lAr~-iH~~--s~r~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 13 EQVSRLAPLDRPVLIIGERGTGKELIAAR-LHYL--SKRWQGPLVKLNCAALSENL 65 (329)
T ss_pred HHHHHHhCCCCCEEEECCCCChHHHHHHH-HHHh--cCccCCCeEEEeCCCCChHH
Confidence 33344445677889999999999987733 3222 22345687776544443443
No 337
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=67.81 E-value=19 Score=46.75 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=32.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINF 1161 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeK 1161 (2693)
.+|.-++|.|||..++.++..+... .+++|+|.-.....++.....+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~r 131 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADR 131 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHH
Confidence 4788999999999998888766543 2457887765555555444433
No 338
>CHL00095 clpC Clp protease ATP binding subunit
Probab=67.29 E-value=14 Score=52.22 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=21.4
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
..|.||..+.|.|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45779999999999999877776654
No 339
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=67.06 E-value=61 Score=36.65 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1412 LEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK----QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1412 LelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r----GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
..++++++.+....|+||+|+|.....++.|-+.|=.. -+...+ .|.-. ....+ |+|++.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~------------~~~~P---V~i~~~ 78 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPP------------AARQP---VLITWD 78 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SS------------TT--S---EEEE-T
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCC------------CCCCe---EEEecC
Confidence 58899999999999999999999999999999999322 123333 22211 11123 566654
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
... -....++.+|+++..+ |. +..+.. +|+.++..+.- .+-..|.++|
T Consensus 79 ~~~--~~~~~~~vLinL~~~~-p~-~~~~f~-----------rvieiv~~~~~-~~~~aR~r~r 126 (137)
T PF04364_consen 79 QEA--NPNNHADVLINLSGEV-PP-FFSRFE-----------RVIEIVDQDDE-AKQAARERYR 126 (137)
T ss_dssp TS------S--SEEEE--SS---G-GGGG-S-----------EEEEEE-SSHH-HHHHHHHHHH
T ss_pred ccc--CCCCCCCEEEECCCCC-cc-hhhccc-----------EEEEEecCCHH-HHHHHHHHHH
Confidence 322 2334599999999887 22 212222 45555554433 4545555555
No 340
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=66.84 E-value=34 Score=41.63 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=33.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.+.-.+|+..+|.|||..++.++..+.... ..++|++.-.....++...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHH
Confidence 344568899999999999998888776442 23467776544334443333
No 341
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.75 E-value=4.2 Score=36.71 Aligned_cols=28 Identities=46% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHhhhhhee-eccCCCCc
Q 000047 460 MPFKEQQLKQLRAQCLVFLA-FRNGLVPK 487 (2693)
Q Consensus 460 ~PfkeqQLkQLrAQCLVFLa-FRN~l~Pk 487 (2693)
+||...||.+||+|-+.|=- -||.=+|-
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~~pVP~ 29 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARNQPVPP 29 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 58999999999999988733 24555554
No 342
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=66.71 E-value=16 Score=51.94 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhc--CCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNN--QLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n--~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|..-|++++..+.+ ..|.||..+.|.|||..+-+++..+.
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 44457777765433 35789999999999999887776654
No 343
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=66.40 E-value=27 Score=50.86 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=71.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
..|-+-|.+++..+. ..+.-++|...-|+|||.+.-+++. +++.. ...++.++|+..-.. .+..-+ ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~--G~~V~g~ApTgkAA~---~L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAARE-AWEAA--GYRVVGGALAGKAAE---GLEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHH-HHHHc--CCeEEEEcCcHHHHH---HHHHhh-CCCe
Confidence 578999999998764 2234467888899999987755544 44332 234778888755433 222211 1111
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-ccccccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSHRLL 1247 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~RLL 1247 (2693)
.|...+....+........-++||||||.-+-. ..+.+.|... ....+|+
T Consensus 450 ---------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 450 ---------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred ---------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEE
Confidence 111111000000011112357999999998732 2233445444 3567899
Q ss_pred ccccCCCC
Q 000047 1248 LTGTPLQN 1255 (2693)
Q Consensus 1248 LTGTPLQN 1255 (2693)
|-|=|-|-
T Consensus 501 LVGD~~QL 508 (1102)
T PRK13826 501 LVGDPEQL 508 (1102)
T ss_pred EECCHHHc
Confidence 99988553
No 344
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=66.24 E-value=47 Score=44.87 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=30.3
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.......+|.-|.|+|||..|-++ ... .....+||++|--..+-..|
T Consensus 216 a~~~~pvli~Ge~GtGK~~lA~~i-h~~--s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 216 ARSNSTVLLRGESGTGKELIAKAI-HYL--SPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred hCcCCCEEEECCCCccHHHHHHHH-HHh--CCCCCCCeEEeecCCCCHHH
Confidence 345677899999999999877433 222 12345677777655554444
No 345
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=66.20 E-value=16 Score=41.04 Aligned_cols=45 Identities=36% Similarity=0.358 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHH--hhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1092 REYQMSGLRWLVSL--YNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1092 RPYQleGL~WLlsL--y~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|+.|++-+.-++.. .......+|..+.|+|||...-.++.++...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45555555444421 1233456889999999999888777776655
No 346
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.97 E-value=55 Score=44.15 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.|...+|.|||.++.-|+.++....
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhc
Confidence 4778999999998877777665443
No 347
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=65.93 E-value=19 Score=41.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
-||..+.|.|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4788999999999999888887654
No 348
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=64.98 E-value=1.3e+02 Score=43.33 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=46.7
Q ss_pred CchhhHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhhccCCCcChhhHhhHHHHHHhccCcHHHHHHHHHH
Q 000047 801 MSEKWIMDMQKRKLLVEQNWILKQQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDF 874 (2693)
Q Consensus 801 ~~~k~~~d~~kkk~~~~~~~il~~~k~kqrI~~rl~eLke~~s~~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~v 874 (2693)
+...||+|.|..++.+...|-+++.....+.. ..+++....-....-+.+...++++...+.++++....+.
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~--~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~ 199 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSL--MGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSET 199 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcc--hHHHhhhhhhhhHHHHhHHHHHHHhhhhhccccccccccc
Confidence 88899999999998888888777666555533 6666653222223334556666777777766555554443
No 349
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.85 E-value=21 Score=43.98 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
+...+.-+...+.++.|.+|....|.|||..++|+...++ .. ...++++.=..++.+++..+
T Consensus 91 ~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 91 ALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHHHHHHHHH
Confidence 3333433444455788889999999999999999999998 33 23366666555555554443
No 350
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=63.58 E-value=27 Score=44.05 Aligned_cols=42 Identities=19% Similarity=0.039 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|...++.+.....++. .-||..+.|+|||..+.+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4455555554444432 23789999999999988888777543
No 351
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=62.00 E-value=32 Score=42.85 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=28.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH------HHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP------GWESEIN 1160 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~------QW~eEfe 1160 (2693)
-+.+..++|+|||+..=+++..+ .....++|+.|+.++. -|..++.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~----~~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASL----NEDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhc----CCCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 34577899999999876444333 2233356677766553 3665554
No 352
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=61.82 E-value=54 Score=43.19 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=29.5
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
........++..|.|+|||..|-++-. . .....+||++|.=..+-..|
T Consensus 157 ~~~~~~~vli~Ge~GtGK~~lA~~ih~-~--s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 157 LSRSSISVLINGESGTGKELVAHALHR-H--SPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred HhccCCeEEEEeCCCCcHHHHHHHHHh-c--CCCCCCCeEeeeCCCCCHHH
Confidence 344567789999999999976533322 1 22345677777655443333
No 353
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=61.42 E-value=37 Score=46.92 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHH----HHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED----YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed----~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||.....-.+......|.+++|-+.....+..+.+ +|...|+++..++|+++..+|..+++....++.+ +|
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 4678765433333334568899999998877665544 4445589999999999999999999999776655 55
Q ss_pred eeecc-cccccCccccCEEEE
Q 000047 1484 LSIRA-GGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrA-GGeGLNLQaADtVIi 1503 (2693)
++|.+ .-..+.+....+||+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EecHHHHhccccccccceEEE
Confidence 55554 334566777776665
No 354
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=61.21 E-value=5.2e+02 Score=37.13 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=18.6
Q ss_pred CeEEEcCCCCChHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+|....|+|||..+-+++..+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999998887776654
No 355
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.33 E-value=2.5e+02 Score=37.49 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=34.6
Q ss_pred CccEEEEccccc-cccccchHHHHHHhh-----cccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1214 QWHYIIIDEGHR-IKNASCKLNADLKHY-----QSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1214 kWd~VIIDEAHR-IKN~sSKlsraLk~L-----ka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
++|+|.||=+=| .++. .....|..| ....-|.|++|-=..++.+++..+.++..
T Consensus 281 ~~d~ILVDTaGrs~~D~--~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i 340 (407)
T COG1419 281 DCDVILVDTAGRSQYDK--EKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPI 340 (407)
T ss_pred cCCEEEEeCCCCCccCH--HHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCc
Confidence 458899997644 2221 122223333 23455889999988899999888877744
No 356
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.06 E-value=78 Score=42.09 Aligned_cols=75 Identities=16% Similarity=0.071 Sum_probs=41.9
Q ss_pred CccEEEEccccccccccchHHHHHHhhc-----ccccccccccCCCCCHHHHHHHhhhccCC-----------CCCChhH
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQ-----SSHRLLLTGTPLQNNLEELWALLNFLLPN-----------IFNSSED 1277 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~Lk-----a~~RLLLTGTPLQNnLeELwSLLnFL~P~-----------iF~S~k~ 1277 (2693)
.+++++||.+=+..+ ...+...+..+. ....|.|++|--.+.+.+++..+..+... .++..-.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~TKlDEt~~~G~~l~ 347 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIALD 347 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeeeCCCCccHHHH
Confidence 468888888633322 222334444442 23447789998777788777766655332 1233344
Q ss_pred HHHHhcCcccCC
Q 000047 1278 FSQWFNKPFESN 1289 (2693)
Q Consensus 1278 F~e~F~kP~e~~ 1289 (2693)
+...+..|+...
T Consensus 348 ~~~~~~lPi~yv 359 (420)
T PRK14721 348 AVIRRKLVLHYV 359 (420)
T ss_pred HHHHhCCCEEEE
Confidence 555556665543
No 357
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=60.06 E-value=1.2e+02 Score=34.67 Aligned_cols=111 Identities=19% Similarity=0.108 Sum_probs=68.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
...+..++++++.+....|+||+|+|.....++.|-+.|=. .. +...+ .|.-. ....+ |+
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~------------~~~~P---V~ 74 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGL-AGEGP------------AAGQP---VL 74 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCc-CCCCC------------CCCCC---EE
Confidence 34588999999999999999999999999999999999832 11 22222 22111 11223 45
Q ss_pred eeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
|+. ...-+...++.+|+++..+=+. ..+.. +|+-|+ .+.-+.+-..|.++|
T Consensus 75 l~~---~~~~~~~~~~~LinL~~~~p~~--~~~F~-----------Rvieiv-~~d~~~~~~aR~r~r 125 (142)
T PRK05728 75 LTW---PGKRNANHRDLLINLDGAVPAF--AAAFE-----------RVVDFV-GYDEAAKQAARERWK 125 (142)
T ss_pred EEc---CCCCCCCCCcEEEECCCCCcch--hhccc-----------EEEEEe-CCCHHHHHHHHHHHH
Confidence 541 1223556788999998754222 11222 356666 445555555565555
No 358
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=59.50 E-value=10 Score=44.61 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=24.9
Q ss_pred cCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCC
Q 000047 1213 IQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNN 1256 (2693)
Q Consensus 1213 ikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNn 1256 (2693)
..++++||||++.+-... ...+........++|-|=|.|-.
T Consensus 61 ~~~~~liiDE~~~~~~g~---l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGY---LLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred CcCCEEEEeccccCChHH---HHHHHhhccCcceEEEECchhcc
Confidence 358999999999874321 11133333334577778886653
No 359
>PRK14873 primosome assembly protein PriA; Provisional
Probab=59.14 E-value=38 Score=47.27 Aligned_cols=95 Identities=14% Similarity=-0.012 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-C-CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-Q-YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-G-ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
-|||.+.+.+++.+....|+.+||...-......+...|..+ | ..++.||+.++..+|.+.-.+...+... |+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEE
Confidence 479999999999999999999999999998888888888654 3 6799999999999999988888777655 6777
Q ss_pred ecccccccCccccCEEEEecC
Q 000047 1486 IRAGGVGVNLQAADTVIIFDT 1506 (2693)
Q Consensus 1486 TrAGGeGLNLQaADtVIiyDp 1506 (2693)
|+.+- =+=+.+-..||+.|-
T Consensus 247 tRSAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred cceeE-EeccCCCCEEEEEcC
Confidence 77753 234455556666543
No 360
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=58.93 E-value=36 Score=43.48 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHhhcCCCe-EEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNG-ILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnG-ILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
+||+|.....-+...+.+-... |+....|+|||..+..++..++...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4788888877777665443343 6889999999999999988887543
No 361
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=58.72 E-value=87 Score=45.71 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhcccCcccCCC
Q 000047 1544 VRASAEHKLGVANQSITAGFFDNNT 1568 (2693)
Q Consensus 1544 IleraekKl~Li~kVIqaG~fD~~s 1568 (2693)
+-.+..+|..+.+...+.+.+....
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (1021)
T PTZ00266 871 MNAINAKKASIYNNTCDEGTLSKKG 895 (1021)
T ss_pred cchhhhhhhhhhhhccccccccccC
Confidence 4456677877777777777665543
No 362
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=58.52 E-value=16 Score=42.87 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=34.4
Q ss_pred cccccCccEEEEcccccccccc----chHHHHHHhhcccccccccccCCCCCHHHHHHHhhhc
Q 000047 1209 KLSKIQWHYIIIDEGHRIKNAS----CKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFL 1267 (2693)
Q Consensus 1209 ~L~kikWd~VIIDEAHRIKN~s----SKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL 1267 (2693)
.+..-.||+||+||.=..-+.. ..+...|..-...--++|||.- -..+|..+-+++
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~V 151 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG---CPQDLLELADLV 151 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCcee
Confidence 4556689999999997665433 2333333333334469999974 455666555544
No 363
>PHA02244 ATPase-like protein
Probab=58.42 E-value=35 Score=44.54 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1104 sLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
.....+.+.+|..++|+|||..+.++...+ ..|++.|.
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In 151 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMN 151 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 334458889999999999999887776542 34666554
No 364
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=57.76 E-value=38 Score=41.61 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCEEEEe--cCchHHHHHHHHH
Q 000047 1118 MGLGKTVQVIALICYLMETKNDRGPFLVVV--PSSVLPGWESEIN 1160 (2693)
Q Consensus 1118 MGLGKTIQAIALIa~Lle~k~~~gP~LIVV--PtSLL~QW~eEfe 1160 (2693)
=|.|||-.+++|+..|...+ ++++||- |..-+..|.+...
T Consensus 11 GGaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhcc
Confidence 48999999998888886543 2344443 6777889976543
No 365
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=57.58 E-value=9.7 Score=48.64 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=29.4
Q ss_pred CccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHH
Q 000047 1214 QWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLE 1258 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLe 1258 (2693)
+-.+||+||||+- .-.+.-..|.++--..+..+||.+.|-+|.
T Consensus 243 ~dAfVIlDEaQNt--T~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQNT--TVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEeccccc--chhhhceeeeeecCCceEEEEcCcccccCC
Confidence 3478999999983 222233344556667788999999776654
No 366
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=57.16 E-value=26 Score=43.13 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1093 EYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
++..+.++.++.....+...+|..+.|+|||..|.++...+ ..|++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 45566666666667778889999999999999987776532 34666664
No 367
>PRK06321 replicative DNA helicase; Provisional
Probab=56.92 E-value=3e+02 Score=37.31 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.|.-+..-+..+.=.|||.-+|.|||.-++.++...... ...+++++...---.++...+
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~--~g~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ--NRLPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHH
Confidence 344444323333334899999999999998877665432 235678887665555655544
No 368
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=56.17 E-value=39 Score=38.77 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK-------NDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+.-++++...|.|||..++.++..+.... ...+++|+|....-..++.+.+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 33468889999999999999998887421 13456888888776667776666655
No 369
>PRK11823 DNA repair protein RadA; Provisional
Probab=56.14 E-value=37 Score=45.11 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=33.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+|.-++|.|||..++.++..+... ..++|.|.-.....++.....++
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 3789999999999998888776532 34578887665566655444443
No 370
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.20 E-value=32 Score=41.08 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=29.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.-.+|+...|+|||..++.+++.+.... ..++|++.-.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E 51 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLE 51 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCC
Confidence 3458899999999999999888776543 3457888843
No 371
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.03 E-value=32 Score=44.76 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=53.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChH-HHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPE-ERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~-eRk~l~ke~i~~~kf 1191 (2693)
+++.=-|.|||-+..-+++|+.. ...++ ++||--.--.--.+.++.|+-..++-+|....+ .-..+..+
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kk--kG~K~-~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e------- 174 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKK--KGYKV-ALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE------- 174 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHh--cCCce-eEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH-------
Confidence 45667899999888777777643 34554 555544333344556666665555444432111 11111111
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS 1230 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s 1230 (2693)
.-..+.+.+|++||+|=+-|.+-..
T Consensus 175 --------------gv~~fKke~fdvIIvDTSGRh~qe~ 199 (483)
T KOG0780|consen 175 --------------GVDRFKKENFDVIIVDTSGRHKQEA 199 (483)
T ss_pred --------------HHHHHHhcCCcEEEEeCCCchhhhH
Confidence 1124667789999999987765443
No 372
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=55.02 E-value=27 Score=46.56 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhh-c----CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCC-EEEEecCchHHH-HHHHHHHHC--
Q 000047 1093 EYQMSGLRWLVSLYN-N----QLNGILADEMGLGKTVQVIALICYLMETKNDRGP-FLVVVPSSVLPG-WESEINFWA-- 1163 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~-n----~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP-~LIVVPtSLL~Q-W~eEfeKwa-- 1163 (2693)
|+|.-.+..+.-... . ...++|.-.=|-|||..+.++..|.+-..+..++ ++++++..-... -.+++..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 578776665553211 1 1134666778999999988887776654444443 455555433222 223333333
Q ss_pred -CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc--cCCCcccccCccEEEEccccccccccchHHHHHH
Q 000047 1164 -PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK--HDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1164 -PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~--~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
|.+..... .+++ ......|.......+.+. .+...+...+.+++|+||+|.+++. ..+.++.
T Consensus 81 ~~~l~~~~~-------~~~~----~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~ 145 (477)
T PF03354_consen 81 SPELRKRKK-------PKII----KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD--ELYDALE 145 (477)
T ss_pred Chhhccchh-------hhhh----hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH--HHHHHHH
Confidence 22221100 0000 001111111111111110 1334455667899999999999863 3555554
No 373
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=54.72 E-value=71 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=16.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALI 1130 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALI 1130 (2693)
....+|.-+.|+|||..+=++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~ 196 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLAL 196 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3457899999999998764443
No 374
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=54.71 E-value=1.3e+02 Score=35.11 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=55.9
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh-hcC---CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT-FKQ---YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~-~rG---ikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
....++.++.+|+.+....|+||+|+|.....++.|-++|= ... +.+.+..+.. ....+ |
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~-------------~a~~P---V 73 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ-------------PEKQP---I 73 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC-------------CCCCC---E
Confidence 34678999999999999999999999999999999999982 221 2222211110 11233 5
Q ss_pred EeeecccccccCccccCEEEEecCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDW 1508 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppW 1508 (2693)
+|+. .....| .++.+|+++.-+
T Consensus 74 ~L~~--~~~~p~--~~~vLiNL~~~~ 95 (154)
T PRK06646 74 YITD--ELQNPN--NASVLVIISPTD 95 (154)
T ss_pred EEec--CCCCCC--CCCEEEECCCcc
Confidence 5552 223444 788999999855
No 375
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.60 E-value=5.7e+02 Score=33.17 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=35.6
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+.+|....|+||++.|-|++.. .+..|+-|.-..|+..|.-|-++..
T Consensus 168 giLLyGPPGTGKSYLAKAVATE------AnSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATE------ANSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhh------cCCceEEeehHHHHHHHhccHHHHH
Confidence 3467899999999988777653 2355788888889999988876543
No 376
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=54.40 E-value=30 Score=48.85 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..|.||.-+.|+|||..+-++...+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999998777665543
No 377
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=54.20 E-value=82 Score=41.10 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHh-hc--CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC
Q 000047 1090 KLREYQMSGLRWLVSLY-NN--QLNGILADEMGLGKTVQVIALICYLMETKNDR 1140 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy-~n--~lnGILADEMGLGKTIQAIALIa~Lle~k~~~ 1140 (2693)
.-|+-|+.-+...+.-+ .+ ..|.++...+|+|||.++--++..+.+.....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~ 73 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV 73 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC
Confidence 45677777665443322 22 24678999999999999877777776554433
No 378
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=53.75 E-value=1e+02 Score=41.76 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=28.2
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
-..+...+|..|.|+|||..|-++-.. .....+|++.|--..+
T Consensus 207 a~~~~pVlI~Ge~GtGK~~~A~~ih~~---s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 207 AASDLNVLILGETGVGKELVARAIHAA---SPRADKPLVYLNCAAL 249 (509)
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHh---CCcCCCCeEEEEcccC
Confidence 345677899999999999887544332 2234567776654433
No 379
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=53.66 E-value=20 Score=44.26 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQV 1126 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQA 1126 (2693)
+|.+|.. ..++..++|..+.|+|||..+
T Consensus 6 ~id~~~~-i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 6 VVDLFAP-IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred heeeecc-cCCCCEEEEECCCCCCHHHHH
Confidence 4444443 345666777788999999644
No 380
>PRK05636 replicative DNA helicase; Provisional
Probab=53.60 E-value=2.6e+02 Score=38.17 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=31.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
=.||+..+|.|||.-++.++...... ...+++++...-...++...
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~--~g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIK--HNKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEeeCCHHHHHHH
Confidence 34889999999999998887665432 23467887665544554433
No 381
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=53.30 E-value=51 Score=40.60 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.2
Q ss_pred CeEEEcCCCCChHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIAL 1129 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIAL 1129 (2693)
..||....|+|||-.|-.+
T Consensus 52 h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHH
Confidence 5799999999999766433
No 382
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=53.29 E-value=25 Score=41.05 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=31.4
Q ss_pred hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1107 NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1107 ~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.++.|.+|...+|+|||..|++++..++..+ .+++++. ...|..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceecccc
Confidence 4567788999999999999999998887632 3355554 334445554
No 383
>PRK06904 replicative DNA helicase; Validated
Probab=53.27 E-value=80 Score=42.49 Aligned_cols=61 Identities=16% Similarity=0.005 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.|..+..-+..+.=.|||.-+|.|||.-++.++...... ...|+|++...--..++...+.
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rll 270 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRML 270 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 344443333344445899999999999988887766432 2457888887766677665543
No 384
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=53.06 E-value=26 Score=47.39 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=21.0
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
..+.+|.-+.|+|||..+-+++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 35678999999999998877777653
No 385
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.77 E-value=65 Score=44.63 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..|...+.++. . -|+..+.|.|||-.+..++..+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5555555555554442 2 47899999999998877777664
No 386
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=52.11 E-value=48 Score=46.59 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
..+.+|..+.|+|||..+-+++..+ ..+++.|....+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 3566899999999998776555433 234555544333
No 387
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=51.98 E-value=56 Score=49.90 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~ 1153 (2693)
..|-+-|++++..++. ..+.-.+|...-|+|||.+.-+++..+..... ....++.++|+.--.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4688999999988774 12345678888999999886555554322111 223467788976543
No 388
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=51.83 E-value=65 Score=46.65 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||.......+-.....+.+++|.+..+..+..+.+.|. ..++++..|+|.++..++.++++.+..+..+ ||
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 4678876555444444567899999999988877666554 3467888999999999999999999776554 45
Q ss_pred eeec-ccccccCccccCEEEE
Q 000047 1484 LSIR-AGGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTr-AGGeGLNLQaADtVIi 1503 (2693)
|.|. .....+.+....+||+
T Consensus 559 IGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EchHHHhhCCCCcccCCEEEe
Confidence 5555 4444567777777666
No 389
>CHL00176 ftsH cell division protein; Validated
Probab=51.50 E-value=81 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
..+.+|..+.|+|||..+=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999988766543
No 390
>PRK11054 helD DNA helicase IV; Provisional
Probab=51.29 E-value=31 Score=48.18 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCchHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSLL~QW~eE 1158 (2693)
..|.+.|.++|..- ..+.++....|+|||.+.++-+.||+..... ...+|+++.+....++..+
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 46889999998532 2344555669999999999999999976532 3458999998777665444
No 391
>PF12846 AAA_10: AAA-like domain
Probab=50.43 E-value=29 Score=41.95 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
.+.++...+|+|||..+..++..++..+ ..++|+-|..-...|.+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~ 46 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLAR 46 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHH
Confidence 4678889999999998887777776543 34677777654444433
No 392
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=50.42 E-value=69 Score=40.60 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.|...|...+..+...+.+++ .++|... |.||+..|..|+..++...
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 467778888888888776664 3444443 6899999999998887654
No 393
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=50.04 E-value=83 Score=40.16 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
..++.+......+...+|..|.|+||+..|-++ ... .....+||++|-=..
T Consensus 17 ~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~i-H~~--s~r~~~pfv~v~c~~ 67 (326)
T PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRL-HYL--SSRWQGPFISLNCAA 67 (326)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-HHh--CCccCCCeEEEeCCC
Confidence 344445555566788899999999999877433 222 222456766555443
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=49.88 E-value=57 Score=39.10 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH-HHH--HHHHCCCCcEEEEcCC-------hHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW-ESE--INFWAPRIHKIVYCGP-------PEER 1178 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW-~eE--feKwaPsLkVIvy~Gs-------~~eR 1178 (2693)
..+.++....|-|||-.|+++....+..+ .+++||==.. ..| ..| +.+.++.+.+..+... ..+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIK--GAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEec--CCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHH
Confidence 45567888999999999999988776543 3455553211 112 122 2222333333221110 0000
Q ss_pred HHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc----hHHHHHHhhcccccccccccCCC
Q 000047 1179 RRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC----KLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1179 k~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS----KlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
..... +.+. ..+..+..-.|++||+||.=..-+..- .+...|..-...--|+|||-
T Consensus 97 ~~~~~---------------~~~~--~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR--- 156 (191)
T PRK05986 97 IAAAR---------------EGWE--EAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR--- 156 (191)
T ss_pred HHHHH---------------HHHH--HHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---
Confidence 00000 0000 012345567899999999877655332 23333333233345999997
Q ss_pred CCHHHHHHHhhhc
Q 000047 1255 NNLEELWALLNFL 1267 (2693)
Q Consensus 1255 NnLeELwSLLnFL 1267 (2693)
+-..+|..+.+++
T Consensus 157 ~~p~~Lie~ADlV 169 (191)
T PRK05986 157 GAPRELIEAADLV 169 (191)
T ss_pred CCCHHHHHhCchh
Confidence 4455555555544
No 395
>PHA00012 I assembly protein
Probab=49.08 E-value=42 Score=43.19 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=18.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1113 ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
++..-.|.|||+.+++-|...+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHc
Confidence 455678999999999866665544
No 396
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=48.92 E-value=42 Score=44.26 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=20.0
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
...+.+++|..+-|.|||..+-.+...+.
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34566677777899999977666554443
No 397
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.90 E-value=85 Score=40.67 Aligned_cols=129 Identities=18% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHH
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERR 1179 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk 1179 (2693)
.+|..+...+.|.+++-.||+|||-..-+++.++ .....++.|=... |+.--.++...+.|....
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i----~~~~rivtiEd~~-------El~l~~~~~v~l~~~~~~---- 217 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI----PPQERLITIEDTL-------ELVIPHENHVRLLYSKNG---- 217 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc----CCCCCEEEECCCc-------cccCCCCCEEEEEeeccc----
Confidence 3455556678899999999999997766655443 2222334433332 221101111111221100
Q ss_pred HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHH
Q 000047 1180 RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1180 ~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeE 1259 (2693)
...--.|+..+.+ ...+.+.|+|||.|.- . ...+.+|+.....+.-.| +|-.-|+..+
T Consensus 218 -----------~~~~~~t~~~ll~-----~~LR~~pD~IivGEiR---~--~ea~~~l~a~~tGh~G~l-tTiHa~s~~~ 275 (344)
T PRK13851 218 -----------AGLGAVTAEHLLQ-----ASLRMRPDRILLGEMR---D--DAAWAYLSEVVSGHPGSI-STIHGANPVQ 275 (344)
T ss_pred -----------cCcCccCHHHHHH-----HHhcCCCCeEEEEeeC---c--HHHHHHHHHHHhCCCcEE-ECCCCCCHHH
Confidence 0001124554543 2234578999999963 2 234556666655554333 4667778877
Q ss_pred HHHHhh
Q 000047 1260 LWALLN 1265 (2693)
Q Consensus 1260 LwSLLn 1265 (2693)
.+.-|-
T Consensus 276 a~~Rl~ 281 (344)
T PRK13851 276 GFKKLF 281 (344)
T ss_pred HHHHHH
Confidence 765443
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=48.29 E-value=74 Score=42.40 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+++...|.|||.++.-++.++...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3678899999999999888887654
No 399
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=47.78 E-value=59 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1118 MGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1118 MGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
-|+|||+.-..=+++| ..++....++|-|=+.+|.+
T Consensus 185 AGSGKT~~La~Kaa~l-h~knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 185 AGSGKTELLAHKAAEL-HSKNPDSRIAFTFFTKILAS 220 (660)
T ss_pred cCCCchhHHHHHHHHH-hcCCCCceEEEEeehHHHHH
Confidence 5999998754444444 44555556888888877755
No 400
>PRK09165 replicative DNA helicase; Provisional
Probab=47.19 E-value=99 Score=41.88 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcC------------CCCCEEEEecCchHHHHHHHHHHHCCCCcEE-EEcCC-
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKN------------DRGPFLVVVPSSVLPGWESEINFWAPRIHKI-VYCGP- 1174 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~------------~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVI-vy~Gs- 1174 (2693)
+.=.|||..+|.|||..++.++........ ...++|++.-.-...++...+.....++..- +..|.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l 296 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKI 296 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCC
Confidence 333589999999999999988877654321 2356788876655666555543322122110 11221
Q ss_pred -hHHHHHHHHhhhhcCCccEEEE-----cHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1175 -PEERRRLFKEKIVHQKFNVLLT-----TYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1175 -~~eRk~l~ke~i~~~kfdVVIT-----TYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
..+..++...........+.|. |.+.+..... ........++||||=.|.|..
T Consensus 297 ~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir-~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 297 SEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARAR-RLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcchHhccC
Confidence 1222222222111233445543 3344432221 112234679999999888763
No 401
>CHL00206 ycf2 Ycf2; Provisional
Probab=47.06 E-value=39 Score=51.43 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..|.+|...+|+|||..|=|++.. ..-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e------s~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN------SYVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh------cCCceEEEEHHHHhhcc
Confidence 346688999999999888666643 34577777777777665
No 402
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=46.48 E-value=1.1e+02 Score=40.17 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
|..++.-+..+.-.||+..+|.|||..++.++..+... ...+++++.-.--..++...
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHH
Confidence 33343323334445899999999999999888766422 24568888755444444333
No 403
>PTZ00121 MAEBL; Provisional
Probab=46.47 E-value=1.5e+03 Score=35.11 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhhhcchhHHHHH-HHHHHHHHHHHHHHhhhccCCCcChhhHhhHHHHHHhccCcHHHHHHHHHHHHHhhcccccchh
Q 000047 809 MQKRKLLVEQNWILK-QQKTKQRMSTCFNKLKESVSSSEDISAKTKSVIELKKLQLLGLQRRLRNDFLNDFFKPITTDMD 887 (2693)
Q Consensus 809 ~~kkk~~~~~~~il~-~~k~kqrI~~rl~eLke~~s~~~d~~~k~ka~iElk~L~Ll~~Q~~lR~~vl~~~~~~~~~~~~ 887 (2693)
+++|+.....+..|. ....++.-..||.++ ++.--|-+..++-.+-++-....-.+....---.-.
T Consensus 1567 eekr~aeE~k~~a~rkaee~~~~~~~~~~~~-------------~~~~~~~~~~kae~~kk~ee~~kk~E~~kk~eeekK 1633 (2084)
T PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEV-------------MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633 (2084)
T ss_pred HHHHHHhhhhhhhhhhHHHHHhHHhhhhhhh-------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhH
Q 000047 888 RLKSYKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERWRGVNKYVKEFHKRKERIHR 967 (2693)
Q Consensus 888 ~~~~~k~~~~~r~~k~~e~~e~k~k~e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ek~~~ 967 (2693)
++...++.. .....+.|+.++.|++++++..... +..+...++.++.-+.--...+++-..-...+.++..++.
T Consensus 1634 k~Eelkk~e----eE~kkk~Ea~kK~EEE~kkraeEea--Kk~EEekKKaEe~kk~~ee~~k~~e~~kk~~ee~k~~~~~ 1707 (2084)
T PTZ00121 1634 KVEQLKKKE----AEEKKKAEELKKAEEENKIKAAEEA--KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707 (2084)
T ss_pred HHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 000047 968 EKIDRIQREKINLLKINDVEGYLRMVQDAKSD------------------RVNKLLKETEKYLQKLGSKLQEA 1022 (2693)
Q Consensus 968 ~~~er~~keRl~aLk~~DeE~Y~~ll~e~K~~------------------rL~~LL~QTe~yl~~L~~~v~~~ 1022 (2693)
++.+..++.|...||...+|.-++.....+.. |+.+|.++.+.-.+.+...-..+
T Consensus 1708 ~k~~~e~~~~~e~~kk~eee~k~k~ee~kkk~ee~kkk~e~~~k~eeek~ki~~~kkeeekkae~~RKQQEAa 1780 (2084)
T PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780 (2084)
T ss_pred HhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
No 404
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.46 E-value=23 Score=47.78 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..|...+.+++ .-++...=|+|||-.|=.++..|-.
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 6666666766665554 3378889999999887656555543
No 405
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=46.34 E-value=92 Score=44.81 Aligned_cols=69 Identities=25% Similarity=0.283 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC---CCC-EE------EEecCchHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMETKND---RGP-FL------VVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1095 QleGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~k~~---~gP-~L------IVVPtSLL~QW~eEfeKw 1162 (2693)
|..-|++++..+. ...|.||..+.|+|||..+=+++..+....-. .++ ++ +++.......|...|+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i 271 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSV 271 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHH
Confidence 4455777766433 34578999999999999887776655432100 112 22 234445556677766544
Q ss_pred C
Q 000047 1163 A 1163 (2693)
Q Consensus 1163 a 1163 (2693)
+
T Consensus 272 i 272 (852)
T TIGR03345 272 I 272 (852)
T ss_pred H
Confidence 3
No 406
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=46.26 E-value=39 Score=43.27 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.+.++|..-|..+ ...+.|.|++..||+|||-..-+++.++.
T Consensus 126 ~g~~~~~~~~~L~~~---v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 126 SKIMTEAQASVIRSA---IDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCCCHHHHHHHHHH---HHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 355666776555444 44677889999999999988767666554
No 407
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=45.65 E-value=56 Score=49.45 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL~Q 1154 (2693)
.|-+-|++++..++. ..+.-.+|.-.-|+|||.+.-+++..+.... .....++.++|+.--..
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~ 898 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG 898 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH
Confidence 688999999987764 1234568888999999988655544332211 12234777888765533
No 408
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=45.43 E-value=37 Score=44.53 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=16.4
Q ss_pred CCeEEEcCCCCChHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALI 1130 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALI 1130 (2693)
.+.||....|+|||-.|-.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH
Confidence 356999999999997774443
No 409
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=45.42 E-value=62 Score=42.83 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=18.6
Q ss_pred hcCCCeEEEcCCCCChHHHHHHHHHH
Q 000047 1107 NNQLNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1107 ~n~lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
..+..++|..+.|+|||..+..++..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHh
Confidence 34566788888999999766554443
No 410
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=45.29 E-value=1.3e+02 Score=39.56 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
+..+..........++.-++|+||+..+-++-. ......+|++.|--..+-..|
T Consensus 156 ~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~---~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 156 CKDTAKIALSQASVLISGESGTGKELIARAIHY---NSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred HHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHH---hCCCCCCCeEEEECCCCCHHH
Confidence 333444444566788999999999988755432 223345677766655554444
No 411
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.17 E-value=57 Score=41.85 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..+...+.++. ..|+..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5556666666655542 457899999999988887766554
No 412
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=45.15 E-value=63 Score=43.21 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=35.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+|+-++|.|||..++.++..+... .+++|.|.-.....++.....++
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHc
Confidence 3789999999999998888776543 24588888776666665554443
No 413
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=45.13 E-value=58 Score=40.98 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCC--Ce-EEEcCCCCChHHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NG-ILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1135 (2693)
|...+..+...+..+. .. |+..+-|.|||..+.+++..++.
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4444444444444332 23 78999999999999988887754
No 414
>PTZ00293 thymidine kinase; Provisional
Probab=44.90 E-value=22 Score=42.99 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=24.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++...|++|||...|-.+..+.. ..++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 56789999999776665554433 234578888753
No 415
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=44.85 E-value=30 Score=46.05 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
..+.||+...|+|||+.|-++..++ ..+|+-|-...++..|.-|.++-
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 3467899999999999987777632 34566666558888898777643
No 416
>PRK10689 transcription-repair coupling factor; Provisional
Probab=44.82 E-value=1e+02 Score=45.66 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=66.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||.......+......+.+|||.+..+..+..+.+.|.. .++++..++|..+..++..+++.+..+..+ +|
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~d---IV 707 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKID---IL 707 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCC---EE
Confidence 46788755444433445688999999999887766665543 356778899999999999999988766555 45
Q ss_pred eeec-ccccccCccccCEEEE
Q 000047 1484 LSIR-AGGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTr-AGGeGLNLQaADtVIi 1503 (2693)
|.|. .....+++.....||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 5554 4444567777777776
No 417
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=44.04 E-value=46 Score=45.48 Aligned_cols=45 Identities=24% Similarity=0.386 Sum_probs=35.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcC---CCCCEEEEecCchHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKN---DRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~---~~gP~LIVVPtSLL~QW~ 1156 (2693)
.|+-..-|+|||-+|+-=++||+...+ ..+++||+.|+.+...+.
T Consensus 229 lVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 229 LVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred EEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 366788999999999987787776543 346799999998876553
No 418
>PRK05748 replicative DNA helicase; Provisional
Probab=44.02 E-value=1.2e+02 Score=40.20 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.+|..+..-+..+.-.||+..+|.|||.-++.++...... ...+++++...-.-.++...+
T Consensus 191 ~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 191 TDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred HHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHHHHHHH
Confidence 3444444333334445899999999999999888776432 234678887665555655544
No 419
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=43.90 E-value=2.4e+02 Score=37.07 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=28.4
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.......+|..|+|+||+..|-++- .+ .....+|+++|.-..+-..|
T Consensus 159 a~~~~~vli~Ge~GtGK~~lA~~ih-~~--s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 159 APSDITVLLLGESGTGKEVLARALH-QL--SDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred hCCCCCEEEECCCCcCHHHHHHHHH-Hh--CCcCCCCeEEEECCCCChHH
Confidence 3456778899999999998663332 22 22345676665544444443
No 420
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=43.73 E-value=70 Score=40.87 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=52.1
Q ss_pred CCCChHHHHHHHHHHHHHhcC------------CCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhh
Q 000047 1118 MGLGKTVQVIALICYLMETKN------------DRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKEK 1185 (2693)
Q Consensus 1118 MGLGKTIQAIALIa~Lle~k~------------~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~ 1185 (2693)
=|+|||=.++.|+.+|.+.+. ..+..++|.+.+.-..--+|-...+-...+.++.+....+ .....
T Consensus 39 GGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~--a~~~~ 116 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKD--AILLI 116 (311)
T ss_pred CCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHH--HHHHH
Confidence 489999999999988876531 1123356666554333233432222111233344433222 21211
Q ss_pred hhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccc
Q 000047 1186 IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1186 i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN 1228 (2693)
....+++|+|.=-.+- ..-...++++|++|-..-+.|
T Consensus 117 ~~~~~~dviilDDGfQ------h~~l~rD~~IvlvD~~~~fgn 153 (311)
T TIGR00682 117 LEQLDPDVIILDDGLQ------HRKLHRDVEIVVVDGQRPFGN 153 (311)
T ss_pred HhcCCCCEEEECCCCc------CccccCCeEEEEECCCCCCCC
Confidence 2223677777622211 112234578888887666655
No 421
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=43.68 E-value=82 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=18.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
.+.||..+.|+|||..+-++...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999887666543
No 422
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.59 E-value=1.2e+02 Score=42.76 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=18.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~L 1133 (2693)
.++..++|+|||..|-++...+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh
Confidence 4789999999999987776655
No 423
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=43.08 E-value=1.9e+02 Score=33.08 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1112 GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.++....|.|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3677899999999998888777644
No 424
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=43.07 E-value=29 Score=48.35 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL 1152 (2693)
.|-+-|.++|.+. ....++....|+|||.+.+.-+.+|+...+ ....+|+|+-+.--
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHH
Confidence 4778899988642 344566677999999999999999997533 34458888876544
No 425
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=42.92 E-value=50 Score=46.43 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=66.9
Q ss_pred hhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEe
Q 000047 1406 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF-KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484 (2693)
Q Consensus 1406 vr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~-rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLL 1484 (2693)
+.-|||.+.+.+++.+..+.|+.+||-..-......+.+.|+. .|.++..+|++.+..+|...-.+...+... ++|
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~---vVI 301 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEAR---VVI 301 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCce---EEE
Confidence 5678999999999999999999999999888877777776654 478999999999999999998888777654 455
Q ss_pred eeccc
Q 000047 1485 SIRAG 1489 (2693)
Q Consensus 1485 STrAG 1489 (2693)
-|+.+
T Consensus 302 GtRSA 306 (730)
T COG1198 302 GTRSA 306 (730)
T ss_pred Eechh
Confidence 55553
No 426
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=42.79 E-value=49 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
.+.||..+.|+|||..+-+++..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988766543
No 427
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=42.71 E-value=49 Score=40.36 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=31.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
=.||+..+|.|||.-++.++..+....+ .++|++...-.-.+
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEEE 62 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHHH
Confidence 3589999999999999999988876532 56888887644444
No 428
>PRK08506 replicative DNA helicase; Provisional
Probab=42.48 E-value=1.5e+02 Score=39.86 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.|.-+..-+..+.-.|||..+|.|||..++.++..... ...+++++...--..++...+
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~---~g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN---QDKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh---cCCcEEEEeCcCCHHHHHHHH
Confidence 34434332333444589999999999999999887653 235688887765555555444
No 429
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.48 E-value=1.1e+02 Score=41.79 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHH
Q 000047 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEI 1159 (2693)
Q Consensus 1104 sLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEf 1159 (2693)
.........+|..|.|+||+..|-++- .. .....+||+.|--..+-.. |..|+
T Consensus 230 ~~A~~~~pVLI~GE~GTGKe~lA~~IH-~~--S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 230 LYARSDATVLILGESGTGKELVAQAIH-QL--SGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred HHhCCCCcEEEECCCCcCHHHHHHHHH-Hh--cCcCCCCEEEeccccCChhHHHHHh
Confidence 334456778999999999998774332 21 2334578777665544333 44443
No 430
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.78 E-value=69 Score=41.32 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=67.5
Q ss_pred CCe-EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChH-HHHHHHHhhhh
Q 000047 1110 LNG-ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPE-ERRRLFKEKIV 1187 (2693)
Q Consensus 1110 lnG-ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~-eRk~l~ke~i~ 1187 (2693)
.+. ++..-.|.|||-+..-|+.+|... ...+||.+=-.--.--.++++-|.-.+.+-++.+... .-..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~---g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAa------- 208 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ---GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAA------- 208 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC---CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHH-------
Confidence 344 456778999998766666666532 2335555544333445667777775444433332110 0000
Q ss_pred cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc------hHHHHHHhh--cccccccc--cccCCCCCH
Q 000047 1188 HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC------KLNADLKHY--QSSHRLLL--TGTPLQNNL 1257 (2693)
Q Consensus 1188 ~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS------KlsraLk~L--ka~~RLLL--TGTPLQNnL 1257 (2693)
.-|+.+.. -...++|+||||=|=||-|... |..+.++.. .++|.++| =||-=||.+
T Consensus 209 --------VafDAi~~------Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 209 --------VAFDAIQA------AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred --------HHHHHHHH------HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 01222221 2234689999999999876442 222333222 23455554 488777776
Q ss_pred HHH
Q 000047 1258 EEL 1260 (2693)
Q Consensus 1258 eEL 1260 (2693)
...
T Consensus 275 ~QA 277 (340)
T COG0552 275 SQA 277 (340)
T ss_pred HHH
Confidence 653
No 431
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=41.67 E-value=97 Score=42.43 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=32.0
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHH-----hcCCCCCEEEEecCchHHH-HHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLME-----TKNDRGPFLVVVPSSVLPG-WESE 1158 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle-----~k~~~gP~LIVVPtSLL~Q-W~eE 1158 (2693)
.......+|..|.|+||+..|=++-..+.. .....+||+.|--..+-.. |..|
T Consensus 239 A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~llese 297 (538)
T PRK15424 239 ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE 297 (538)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHH
Confidence 345667899999999999887444332110 1234568777765544333 4444
No 432
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=40 Score=43.78 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=29.8
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINF 1161 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeK 1161 (2693)
...|.+|-...|+|||..|-++.... ...|+=|-=..+...|.-|-++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHH
Confidence 46677899999999999887776432 2223333333444556555443
No 433
>PTZ00332 paraflagellar rod protein; Provisional
Probab=41.62 E-value=1.1e+03 Score=32.34 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhHHHHH
Q 000047 914 ERQKRIRERQKEFFSEIEAHKERLDEVFKIKR---ERWRGVNKYVKE 957 (2693)
Q Consensus 914 e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~---~~~~~~~~~v~~ 957 (2693)
+++.+.+.-+.+|+....+|.+.++.-+..-- .=...+..+|..
T Consensus 352 ~rEekRr~~yeqFl~~asQHkqrL~~tv~Ncd~a~~~~~~lee~V~e 398 (589)
T PTZ00332 352 DREEKRRVEYQQFLEVAGQHKKLLELTVYNCDLALRCTGLVEELVSE 398 (589)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788899988889888776543322 112345555554
No 434
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.51 E-value=1.3e+02 Score=41.01 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe-----------cCchHHHHHHHHHHHCCCCcEEE---EcCC
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV-----------PSSVLPGWESEINFWAPRIHKIV---YCGP 1174 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV-----------PtSLL~QW~eEfeKwaPsLkVIv---y~Gs 1174 (2693)
..|.+|....|+|||+.|=|++ +...-||+... =..-+.+...+.++.+|.+-.|- -.|.
T Consensus 337 PKGVLLvGPPGTGKTlLARAvA------GEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~ 410 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVA------GEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGG 410 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhh------cccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcc
Confidence 4577999999999998776554 33344543322 22222233333344445432221 1121
Q ss_pred hHH------HHHHHHhh-h----hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh---
Q 000047 1175 PEE------RRRLFKEK-I----VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY--- 1240 (2693)
Q Consensus 1175 ~~e------Rk~l~ke~-i----~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L--- 1240 (2693)
+.. -++.+... . ...+-.|+|.--..+-..+|+..++.-+||..|.=----++....-+...+..+
T Consensus 411 kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~ 490 (752)
T KOG0734|consen 411 KRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD 490 (752)
T ss_pred cCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc
Confidence 110 01111110 1 122335666555555555677777777888755422222222222222222222
Q ss_pred -cccccccccccCCCCCHHHHHHHhh
Q 000047 1241 -QSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1241 -ka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
...-.++--|||= =+-.||-+|+|
T Consensus 491 ~~VD~~iiARGT~G-FsGAdLaNlVN 515 (752)
T KOG0734|consen 491 EDVDPKIIARGTPG-FSGADLANLVN 515 (752)
T ss_pred cCCCHhHhccCCCC-CchHHHHHHHH
Confidence 1234477778883 23456666655
No 435
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.34 E-value=72 Score=47.26 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtS 1150 (2693)
..+.++|..+|+|||...-++|+.++... ...-.+++|-|+.
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 35779999999999999888888766543 2233366667774
No 436
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.15 E-value=2.4e+02 Score=35.56 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec-C---chHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP-S---SVLPGWESE 1158 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP-t---SLL~QW~eE 1158 (2693)
+....|....|+|||..+..++..+... ...+.+|.- . ..+.||...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~ 125 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDY 125 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHH
Confidence 3455778889999999887676665432 223444443 2 245566543
No 437
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.94 E-value=63 Score=42.94 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCC-hHHHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGP-PEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs-~~eRk~l~ke~i~~~kf 1191 (2693)
+++-=-|+|||-++.-|+.||.. ...++ |+||--.--.--.++++..+-.+.+-+|... ...-..+.+..
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk--~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a------ 174 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK--KGKKV-LLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA------ 174 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH--cCCce-EEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHH------
Confidence 56777899999999888888876 34454 5554332223344455555544444444431 11111111111
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
...+....+|+||||=|=|+.
T Consensus 175 ---------------l~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 175 ---------------LEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred ---------------HHHHHHcCCCEEEEeCCCccc
Confidence 123444568999999987763
No 438
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.93 E-value=1.3e+03 Score=32.86 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000047 977 KINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLGSK 1018 (2693)
Q Consensus 977 Rl~aLk~~DeE~Y~~ll~e~K~~rL~~LL~QTe~yl~~L~~~ 1018 (2693)
.|+.|+..-++..+.| ++-.+..-..|++..-.-|..|...
T Consensus 1095 qmrdl~~qce~ni~EL-~qlQNEKchlLvEhEtqklKelde~ 1135 (1187)
T KOG0579|consen 1095 QMRDLKEQCEENIIEL-DQLQNEKCHLLVEHETQKLKELDEK 1135 (1187)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666766666655554 5555555455555444444444433
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.67 E-value=1.6e+02 Score=37.84 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=22.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
.|.-..|.|||.++..++.++... .+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 466799999999988888776532 23455554
No 440
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=40.56 E-value=55 Score=41.86 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+-+.|.+-+. .....+.+.+++..+|+|||-..-+++.++.
T Consensus 131 g~~~~~~~~~L~---~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 131 GIMTAAQREAII---AAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 445555655444 3444678889999999999977666666543
No 441
>PRK07004 replicative DNA helicase; Provisional
Probab=40.37 E-value=95 Score=41.62 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=34.9
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.+.=.|||..+|.|||.-++.++.+.... ...|++++...-.-.++...+
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHH
Confidence 34445899999999999999888776532 245678887665555654444
No 442
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=40.25 E-value=84 Score=41.64 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=38.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC--------chHHHHHHHHHHHCCCCcEEEEcC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS--------SVLPGWESEINFWAPRIHKIVYCG 1173 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt--------SLL~QW~eEfeKwaPsLkVIvy~G 1173 (2693)
.+|..++|+|||-.+-|+..+........+ ++-+... .+..+-.++|++++ .+..+++..
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~-v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDD 183 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNAR-VVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDD 183 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCce-EEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeech
Confidence 479999999999988777777766544332 3333321 22234566788888 777666543
No 443
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=40.09 E-value=15 Score=43.19 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=45.6
Q ss_pred EEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHhhhhcCCcc
Q 000047 1114 LADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA-PRIHKIVYCGPPEERRRLFKEKIVHQKFN 1192 (2693)
Q Consensus 1114 LADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa-PsLkVIvy~Gs~~eRk~l~ke~i~~~kfd 1192 (2693)
|-.+=|-||+.....++..++..+. ..++|.+|.-.-.+ .+.+|+ ..+..+-|......+. .....+......
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~---~lf~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 75 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQ---TLFEFAEKGLKALGYKEEKKKRI-GQIIKLRFNKQR 75 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-H---HHHHCC---------------------------CCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHH---HHHHHHHhhcccccccccccccc-ccccccccccce
Confidence 4445899999776555555543332 35788888643211 222222 1222222222111000 000111223444
Q ss_pred EEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-hcccccccccccC
Q 000047 1193 VLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-YQSSHRLLLTGTP 1252 (2693)
Q Consensus 1193 VVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-Lka~~RLLLTGTP 1252 (2693)
|-...++.+.. ....+|+||||||=-|- .-.|.. +....|++++.|=
T Consensus 76 i~f~~Pd~l~~-------~~~~~DlliVDEAAaIp------~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLA-------EKPQADLLIVDEAAAIP------LPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCC-------T----SCEEECTGGGS-------HHHHHHHHCCSSEEEEEEEB
T ss_pred EEEECCHHHHh-------CcCCCCEEEEechhcCC------HHHHHHHHhhCCEEEEEeec
Confidence 54455554433 12246999999996651 223333 3466778887775
No 444
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=39.88 E-value=81 Score=37.16 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=23.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++...|++|||...|..+..+.. ....+|++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEec
Confidence 45678999999887777665533 23447777775
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=39.87 E-value=1.3e+02 Score=37.57 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
..+.+.|.+.+.+++. ..+...+++-++|+|||-..-+++.++.
T Consensus 62 lg~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 62 LGLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred cCCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3467888888877764 2233457999999999988877776653
No 446
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.82 E-value=80 Score=42.19 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...+++..+|.|||.++..++.++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34578899999999999888877764
No 447
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.44 E-value=1.3e+02 Score=38.88 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHHhcCC------------CCCEEEEecCchHHHHHHH---HHHHCCCCcEEEEcCChHHHHHHHH
Q 000047 1119 GLGKTVQVIALICYLMETKND------------RGPFLVVVPSSVLPGWESE---INFWAPRIHKIVYCGPPEERRRLFK 1183 (2693)
Q Consensus 1119 GLGKTIQAIALIa~Lle~k~~------------~gP~LIVVPtSLL~QW~eE---feKwaPsLkVIvy~Gs~~eRk~l~k 1183 (2693)
|+|||=.++.++.+|.+.+.. .+..++|.+.+.-..--+| +.+.+| ..+++. .. |.+...
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V~V~--~d--R~~~~~ 121 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPVIVG--PD--RVAAAR 121 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcEEEe--Cc--HHHHHH
Confidence 899999999999998876321 1225788887755444444 456666 444443 32 222222
Q ss_pred hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc----cchHHHHHHhhcccccccccccCCC
Q 000047 1184 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA----SCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1184 e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~----sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
........+|+|.=-.+- ..-...++++|++|-.+-+.|. ...+..-+..+...-.+++|+.+-.
T Consensus 122 ~~~~~~~~dviilDDGfQ------h~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~ 190 (326)
T PF02606_consen 122 AALKEFPADVIILDDGFQ------HRRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDAS 190 (326)
T ss_pred HHHHHCCCCEEEEcCCcc------cccccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcc
Confidence 222223378877632211 1122346789999987776662 2233333444444445666777643
No 448
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=39.35 E-value=38 Score=47.58 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.+|.-..|+|||..+-+++..+ ..+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 3456889999999999887666543 2457777666555544
No 449
>PRK08760 replicative DNA helicase; Provisional
Probab=39.03 E-value=1.4e+02 Score=40.39 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=38.9
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.+.=.|||..+|.|||..++.++...... ...+++++...-...+|...+...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~--~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK--SKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh--cCCceEEEeccCCHHHHHHHHHHh
Confidence 33345899999999999999888776532 234688888877777887776544
No 450
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=38.75 E-value=1.1e+02 Score=38.31 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=21.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
...+|+..+|.|||.++..|+.++...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 344677899999999998888887654
No 451
>CHL00195 ycf46 Ycf46; Provisional
Probab=38.61 E-value=54 Score=44.27 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
..+.+|..+.|+|||..+=+++..+ ..|++.|-...+.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~ 296 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLF 296 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhc
Confidence 3567899999999999887766543 3467777665443
No 452
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=38.54 E-value=1.9e+02 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=22.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
+|+.-.|.|||-++..++.++... ..+ ++||+
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~--G~k-V~lV~ 135 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK--GFK-PCLVC 135 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCC-EEEEc
Confidence 577889999999998888776533 233 45554
No 453
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=92 Score=44.05 Aligned_cols=126 Identities=21% Similarity=0.153 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-----------HHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-----------WESEI 1159 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-----------W~eEf 1159 (2693)
..-||..|+.. .+|+||..+.|+|||+.|-|++ +...-||+-|+=...+.- -..+.
T Consensus 333 P~~Y~~lGAKi-------PkGvLL~GPPGTGKTLLAKAiA------GEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~a 399 (774)
T KOG0731|consen 333 PEQYQELGAKI-------PKGVLLVGPPGTGKTLLAKAIA------GEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLA 399 (774)
T ss_pred HHHHHHcCCcC-------cCceEEECCCCCcHHHHHHHHh------cccCCceeeechHHHHHHhcccchHHHHHHHHHh
Confidence 34567766641 4688999999999999887766 344556655553333321 11122
Q ss_pred HHHCCCCcEE-------------EEcCChHHHHHHHHhhhh-cC----CccEEEEcHHHHHhccCCCcccccCccEEEEc
Q 000047 1160 NFWAPRIHKI-------------VYCGPPEERRRLFKEKIV-HQ----KFNVLLTTYEYLMNKHDRPKLSKIQWHYIIID 1221 (2693)
Q Consensus 1160 eKwaPsLkVI-------------vy~Gs~~eRk~l~ke~i~-~~----kfdVVITTYE~Lik~~Dr~~L~kikWd~VIID 1221 (2693)
++-+|.+..+ .+.|...+|...+...+. .. .-+||+.--..-...+|...++.-+||..|.+
T Consensus 400 r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i 479 (774)
T KOG0731|consen 400 RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQI 479 (774)
T ss_pred hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceec
Confidence 2223322111 122333444443332211 11 22344332222223346667788889988877
Q ss_pred cccccccc
Q 000047 1222 EGHRIKNA 1229 (2693)
Q Consensus 1222 EAHRIKN~ 1229 (2693)
.--.++..
T Consensus 480 ~~p~~~~r 487 (774)
T KOG0731|consen 480 DLPDVKGR 487 (774)
T ss_pred cCCchhhh
Confidence 76665443
No 454
>PRK15115 response regulator GlrR; Provisional
Probab=38.31 E-value=1.9e+02 Score=37.96 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=28.0
Q ss_pred hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1107 NNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1107 ~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
......+|..+.|+|||..|-++-. . .....+|++.|--..+-..|
T Consensus 155 ~~~~~vli~Ge~GtGk~~lA~~ih~-~--s~r~~~~f~~i~c~~~~~~~ 200 (444)
T PRK15115 155 QSDVSVLINGQSGTGKEILAQAIHN-A--SPRASKPFIAINCGALPEQL 200 (444)
T ss_pred cCCCeEEEEcCCcchHHHHHHHHHH-h--cCCCCCCeEEEeCCCCCHHH
Confidence 3456778999999999986533322 1 12345677777655443334
No 455
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.96 E-value=1.4e+03 Score=32.89 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 000047 997 KSDRVNKLL 1005 (2693)
Q Consensus 997 K~~rL~~LL 1005 (2693)
|...|..=|
T Consensus 602 k~~~LE~sL 610 (697)
T PF09726_consen 602 KNQHLENSL 610 (697)
T ss_pred HHHHHHHhh
Confidence 334444333
No 456
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=37.95 E-value=65 Score=41.68 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1090 KLREYQMSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
+|-+-|+.++.+++..+. .+.+.+|...-|+|||...=+++.++.. ....+++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHH
Confidence 466789999999877664 3455578889999999988777766533 33468899988654
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=37.90 E-value=41 Score=41.15 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
++|..+...+.+.|++.++|+|||-+.-+++.++
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhc
Confidence 4455555567788999999999998887776544
No 458
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=37.86 E-value=64 Score=41.49 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
..||..+...+.|.+++.+||+|||-..-+++.++
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 35555566678899999999999997765655443
No 459
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=37.48 E-value=60 Score=45.60 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL 1152 (2693)
.|-+-|++++.+. ....++-...|+|||.+.+.-+.||+...+ ....+|+|+-+.-.
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHH
Confidence 5889999998632 235566667999999999999999987533 33448888876544
No 460
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=37.43 E-value=76 Score=42.04 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
.+.+|..++|+|||..|-++...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999988666543
No 461
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=37.31 E-value=56 Score=45.20 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCch-HHHHHHHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSV-LPGWESEINF 1161 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSL-L~QW~eEfeK 1161 (2693)
|.+-|++++.+- ....++-...|+|||.+.+.-+.+++... .....+|+|+.+.- ...-...+.+
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 678899988642 34556667799999999999999999653 23344777776533 3334444443
No 462
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=37.20 E-value=55 Score=45.91 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL 1152 (2693)
.|-+-|+++|.+- ....++....|+|||.+.+.-+.||+...+ ....+|+|+-+.-.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkA 61 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKA 61 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHH
Confidence 5889999988632 345667777999999999999999997543 33457888876543
No 463
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=36.87 E-value=2.4e+02 Score=38.76 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=90.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCe------EEEcCCCCChHHHHHHHHHHH--HHhcCCCCCEEEEecCchH-HHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNG------ILADEMGLGKTVQVIALICYL--METKNDRGPFLVVVPSSVL-PGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnG------ILADEMGLGKTIQAIALIa~L--le~k~~~gP~LIVVPtSLL-~QW~eEf 1159 (2693)
..|-|||...+.-|.-.|+.+-+. +|...=+=|||-.+.+++.+. +.. ....-++|++|.--. .+--.++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHH
Confidence 579999999998888777665543 677788999998776665553 333 333347888886443 2233333
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHH---Hh--ccCCCcccccCccEEEEccccccccccchHH
Q 000047 1160 NFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYL---MN--KHDRPKLSKIQWHYIIIDEGHRIKNASCKLN 1234 (2693)
Q Consensus 1160 eKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~L---ik--~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls 1234 (2693)
+..+-... ..+. .. ...-+-.++++... ++ ..+...+...+..+.||||-|.+++.. ..+
T Consensus 139 r~mv~~~~--------~l~~-----~~-~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~ 203 (546)
T COG4626 139 RDMVKRDD--------DLRD-----LC-NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMY 203 (546)
T ss_pred HHHHHhCc--------chhh-----hh-ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHH
Confidence 32221111 0000 00 01111111111111 11 113445777889999999999998876 444
Q ss_pred HHHH-hhc---cccccccc--ccCCCCCHHHHHHHhhhccCCCCCC
Q 000047 1235 ADLK-HYQ---SSHRLLLT--GTPLQNNLEELWALLNFLLPNIFNS 1274 (2693)
Q Consensus 1235 raLk-~Lk---a~~RLLLT--GTPLQNnLeELwSLLnFL~P~iF~S 1274 (2693)
..+. .+. ....+.+| |-|...-+.+.+..+.-++-+...+
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d 249 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKD 249 (546)
T ss_pred HHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCC
Confidence 4443 232 22223333 4455555555555444444444333
No 464
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=36.79 E-value=1.5e+02 Score=38.98 Aligned_cols=49 Identities=14% Similarity=0.029 Sum_probs=33.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
+.-.+|+..+|.|||..++.+++...... ..++|++...--..+....+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcCCHHHHHHHH
Confidence 33348899999999999998888765432 34678887665555543333
No 465
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=36.69 E-value=1.4e+03 Score=31.94 Aligned_cols=17 Identities=12% Similarity=-0.193 Sum_probs=7.8
Q ss_pred cccccCCcccccccccc
Q 000047 765 TIPVDNSVRNGISLTTE 781 (2693)
Q Consensus 765 ~~~~~~~~~~g~~~~~~ 781 (2693)
+.-++-++.+-++.+.+
T Consensus 61 ~~~~~~~~~e~e~~~~~ 77 (591)
T KOG2412|consen 61 GGGFVMHVSEDEMESDE 77 (591)
T ss_pred cCCccchhHHHHHHhcc
Confidence 44444444444444433
No 466
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=36.68 E-value=7.4e+02 Score=34.93 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 000047 953 KYVKEFHKRKERI 965 (2693)
Q Consensus 953 ~~v~~~~~~~ek~ 965 (2693)
+-.+...+++|++
T Consensus 303 kd~KKqqkekEke 315 (811)
T KOG4364|consen 303 KDIKKQQKEKEKE 315 (811)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 467
>PRK08840 replicative DNA helicase; Provisional
Probab=36.32 E-value=1.9e+02 Score=38.93 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
|..+..-+..+.=.|||.-+|.|||.-++.++...... ...|++++...--..++...+
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEeccCCHHHHHHHH
Confidence 33333333344445899999999999998887766432 245788887665556665544
No 468
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=36.17 E-value=1.9e+02 Score=37.59 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred HHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHH
Q 000047 1101 WLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRR 1180 (2693)
Q Consensus 1101 WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~ 1180 (2693)
+|..+...+.+.+++..+|+|||-..-+++.++ ....+ +++|--.. |+.-..|+...+.+.....
T Consensus 170 ~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i---~~~~r-iv~iEd~~-------El~~~~~~~~~l~~r~~~~---- 234 (340)
T TIGR03819 170 LLRAIVAARLAFLISGGTGSGKTTLLSALLALV---APDER-IVLVEDAA-------ELRPDHPHVVRLEARPANV---- 234 (340)
T ss_pred HHHHHHhCCCeEEEECCCCCCHHHHHHHHHccC---CCCCc-EEEECCcc-------eecCCCCCeeeEEeccccc----
Confidence 344444567788999999999997665554433 12222 33332221 2211122222221110000
Q ss_pred HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCCHHHH
Q 000047 1181 LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1181 l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNnLeEL 1260 (2693)
.+ .--.||..+.+ .....+.|+|||.|.- . ...+..++.+.+-|.-.+ +|-.-|+..+.
T Consensus 235 -------~g---~~~~t~~~ll~-----~aLR~~PD~IivGEiR---g--~Ea~~~l~a~~tGh~G~~-tTiHA~s~~~~ 293 (340)
T TIGR03819 235 -------EG---AGAVTLTDLVR-----QALRMRPDRIVVGEVR---G--AEVVDLLAALNTGHDGGA-GTLHANSPADV 293 (340)
T ss_pred -------cC---cCccCHHHHHH-----HHhccCCCeEEEeCcC---c--HHHHHHHHHHHcCCCceE-EeeCCCCHHHH
Confidence 00 01125555554 2234578999999963 2 233455666666665333 56677888776
Q ss_pred HHHh
Q 000047 1261 WALL 1264 (2693)
Q Consensus 1261 wSLL 1264 (2693)
+.-|
T Consensus 294 ~~RL 297 (340)
T TIGR03819 294 PARL 297 (340)
T ss_pred HHHH
Confidence 6533
No 469
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.14 E-value=1.5e+03 Score=32.24 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHhHHHHHHHH
Q 000047 892 YKKHRHGRRIKQLEKFEQKMKEERQKRIRERQKEFFSEIEAHKERLDEVFKIKRERW-----------RGVNKYVKEFHK 960 (2693)
Q Consensus 892 ~k~~~~~r~~k~~e~~e~k~k~e~e~~~r~~~~~~~~~i~~h~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~ 960 (2693)
||+.| ..--++|-+||.|.+.+++.-.-+-.++.......|..+.+........-. +|+.+.+....+
T Consensus 492 YKrmR-rqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~a~EkKfqq~i~~qqk 570 (948)
T KOG0577|consen 492 YKRMR-RQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAASAEEKKFQQHILGQQK 570 (948)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhH
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhchHH-------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000047 961 RKERIHREKIDRIQREKINLLKINDVE-------GYLRMVQDAKSD-------RVNKLLKETEKYLQKLGSKLQEAKSMA 1026 (2693)
Q Consensus 961 ~~ek~~~~~~er~~keRl~aLk~~DeE-------~Y~~ll~e~K~~-------rL~~LL~QTe~yl~~L~~~v~~~k~~~ 1026 (2693)
+.-+.-.+-..|.=|-|.+++|.+--| .|-..+...|+. +=..||..-..|++.-...++...-++
T Consensus 571 k~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaeeEa~ll~~qrqy~ele~r~ykRk~l~~ 650 (948)
T KOG0577|consen 571 KELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEEEAGLLRRQRQYLELECRRYKRKMLLA 650 (948)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 000047 1027 SH 1028 (2693)
Q Consensus 1027 ~~ 1028 (2693)
.|
T Consensus 651 rH 652 (948)
T KOG0577|consen 651 RH 652 (948)
T ss_pred hh
No 470
>PRK08939 primosomal protein DnaI; Reviewed
Probab=35.80 E-value=86 Score=39.92 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1098 GLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1098 GL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
++.|+..... .+.|.+|...+|+|||..+.|++..+...
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455543221 23456788999999999999999988743
No 471
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=35.73 E-value=62 Score=40.93 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+|..+...+.+.|++-.||+|||-.+-+++.++.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34444555678889999999999988766665543
No 472
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=35.59 E-value=2.1e+02 Score=44.94 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=44.3
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
+.+..|-+-|.+++..++. ..+.-.||--.-|+|||.+.-+++.. ++.. ...+++++|+..-.+
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~--G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHL-ASEQ--GYEIQIITAGSLSAQ 488 (1960)
T ss_pred cccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHH-HHhc--CCeEEEEeCCHHHHH
Confidence 3456799999999987664 12344577788999999877555544 4332 345899999876544
No 473
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=35.48 E-value=47 Score=43.03 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=24.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
|+.-..|+|||..++..+...+........+||+-+.
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 5667899999998876655544442123446777774
No 474
>PRK07773 replicative DNA helicase; Validated
Probab=35.34 E-value=3.1e+02 Score=39.89 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.+|..+..-+..+.=.|||...|.|||..++.++...... ...+++++.-.-...++...+.
T Consensus 205 ~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~--~~~~V~~fSlEms~~ql~~R~~ 266 (886)
T PRK07773 205 TELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR--HRLAVAIFSLEMSKEQLVMRLL 266 (886)
T ss_pred hHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCCCHHHHHHHHH
Confidence 4444444323334445899999999999999998876543 2346788876555555544443
No 475
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=35.32 E-value=1.2e+02 Score=35.36 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=32.3
Q ss_pred cccccCccEEEEccccccccccc----hHHHHHHhhcccccccccccCCCCCHHHHHHHhhh
Q 000047 1209 KLSKIQWHYIIIDEGHRIKNASC----KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNF 1266 (2693)
Q Consensus 1209 ~L~kikWd~VIIDEAHRIKN~sS----KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnF 1266 (2693)
.+....||+||+||.=..-+..- .+...|..-....-++|||-= -..+|..+.++
T Consensus 90 ~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD~ 148 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN---APKELIEAADL 148 (159)
T ss_pred HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCce
Confidence 34556899999999877644322 333333333334458999965 44455544443
No 476
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.95 E-value=1.5e+02 Score=42.37 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1113 ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.|...+|.|||.++.-++.++...
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~ 212 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVAR 212 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHH
Confidence 578999999998877676665433
No 477
>PHA00350 putative assembly protein
Probab=34.44 E-value=66 Score=42.48 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=13.3
Q ss_pred EEEcCCCCChHHHHHHH
Q 000047 1113 ILADEMGLGKTVQVIAL 1129 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIAL 1129 (2693)
|+-.-.|+|||.-++..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 44556899999999864
No 478
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=34.31 E-value=69 Score=44.79 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=52.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecC-chHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPS-SVLPGWESEIN 1160 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPt-SLL~QW~eEfe 1160 (2693)
..|..-|+.+...+.. ..-.|+....|+|||++++-++..|+... ...-|+||+|=+ +.+.|...-+.
T Consensus 377 ~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 4677889999988876 34568899999999999998888888764 334589999975 66777665554
No 479
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=34.27 E-value=8.9e+02 Score=31.32 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHhhhhhhhcchhHHHHHHHHHHHH--HHHHHHH
Q 000047 806 IMDMQKRKLLVEQNWILKQQKTKQR--MSTCFNK 837 (2693)
Q Consensus 806 ~~d~~kkk~~~~~~~il~~~k~kqr--I~~rl~e 837 (2693)
|++--+.++|+||+.+-++.....| |..+|++
T Consensus 14 VL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkd 47 (357)
T PTZ00436 14 ILRCGRHRVWLDPNEASEISNANSRKSVRKLIKD 47 (357)
T ss_pred HhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHC
Confidence 4455567999999999887766444 4444443
No 480
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=34.05 E-value=49 Score=41.92 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.7
Q ss_pred CccEEEEcccccccc-ccchHHHHHHhh
Q 000047 1214 QWHYIIIDEGHRIKN-ASCKLNADLKHY 1240 (2693)
Q Consensus 1214 kWd~VIIDEAHRIKN-~sSKlsraLk~L 1240 (2693)
.-|++.|||.||+.- ..--+|-+|..|
T Consensus 103 ~~DVLFIDEIHrl~~~vEE~LYpaMEDf 130 (332)
T COG2255 103 EGDVLFIDEIHRLSPAVEEVLYPAMEDF 130 (332)
T ss_pred cCCeEEEehhhhcChhHHHHhhhhhhhe
Confidence 358899999999843 344566666655
No 481
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=33.87 E-value=1.6e+03 Score=32.89 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+++.++|.|||..|-++...|+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 37899999999999988887765
No 482
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=33.55 E-value=78 Score=47.26 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH-HHHHCCCCcEE
Q 000047 1091 LREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE-INFWAPRIHKI 1169 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE-feKwaPsLkVI 1169 (2693)
+-+-|.++|. ..+.+.++...-|+|||.+.+.-+.+++..+.....+||||=+....++..+ |.+-....-
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-- 73 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKAL-- 73 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHH--
Confidence 4567888885 3467788999999999999988887777655333458999988776654332 322111000
Q ss_pred EEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccc
Q 000047 1170 VYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHR 1225 (2693)
Q Consensus 1170 vy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHR 1225 (2693)
...+.. ..+.+. ...-...-|+|++.|....-+. ....+...+=|+||...
T Consensus 74 --~~~p~~-~~L~~q--~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 --QQEPNS-KHLRRQ--LALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --hcCchh-HHHHHH--HhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 011111 111111 1122345688888775433222 22334456666787644
No 483
>PRK12608 transcription termination factor Rho; Provisional
Probab=33.51 E-value=1.6e+02 Score=38.98 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
-.++|.++.- ..++.+++|..+.|+|||..+..++..+...
T Consensus 120 ~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 120 SMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hHhhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445655543 3467788899999999998887777666543
No 484
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.42 E-value=94 Score=37.03 Aligned_cols=51 Identities=12% Similarity=0.093 Sum_probs=36.6
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
-.+|+-+.|+|||+.++.+++..+...+ .++|+|.-.....++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHcC
Confidence 3478899999999999988887765522 24788887777777777776554
No 485
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=33.25 E-value=96 Score=41.44 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH-HHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1094 YQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY-LMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~-Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
.++..|..++.+..++.|.|+-...|+|||-.++++..+ .+..+ ..+.+..|+.+-..
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG------~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG------GTITVAKLFYNIST 252 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC------CcCcHHHHHHHHHH
Confidence 344555556566778999999999999999999887776 34333 34555666665443
No 486
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=32.92 E-value=1e+03 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=12.8
Q ss_pred eeccCCCCcceeeeeec
Q 000047 479 AFRNGLVPKKLHLEIAL 495 (2693)
Q Consensus 479 aFRN~l~PkKlhLeiAl 495 (2693)
.||--++|-=--|-||.
T Consensus 760 vF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 760 VFRKVVLPELASLRIAV 776 (1189)
T ss_pred ccceecccchhheeeee
Confidence 68888888777777776
No 487
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.82 E-value=1.6e+02 Score=39.39 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
-.+++...|.|||.++.-++.++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 347889999999999988888875
No 488
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=32.61 E-value=5.8e+02 Score=29.58 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=38.9
Q ss_pred cccHHHH-HHHHHHHhhc----CCCeEEEEEcchHHHHHHH----HHHhhcCCeEEEEeCCCCHHHHHH
Q 000047 1408 LCGKLEM-LDRLLPKLKA----TDHRVLFFSTMTRLLDVME----DYLTFKQYRYLRLDGHTSGGDRGA 1467 (2693)
Q Consensus 1408 ~SgKLel-LdeLL~kLka----tGhKVLIFSQft~tLDILe----d~L~~rGikylRLDGSTS~eERqe 1467 (2693)
.+||... +.-++..+.. .+.++||.+.....+..+. .++...++.+..++|+.+..++..
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR 114 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH
Confidence 3567533 4444444443 3678999999887766544 444445788899999988765543
No 489
>PRK08006 replicative DNA helicase; Provisional
Probab=32.51 E-value=2.3e+02 Score=38.27 Aligned_cols=60 Identities=15% Similarity=-0.024 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
|..+..-+..+.=.|||.-+|.|||.-++.++...... ...+++++...--..++...+.
T Consensus 214 LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 214 LNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred HHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 33333333344445899999999999999888776532 2456788876655566655443
No 490
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=32.48 E-value=1.3e+02 Score=39.20 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhc
Q 000047 1126 VIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204 (2693)
Q Consensus 1126 AIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~ 1204 (2693)
.+.+..++-...+...|+||.+|.-. +.+....+++-+|..+....+.....|.+.. ..++.+.++++|||-= |-+
T Consensus 291 ~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV-~~fR~G~~~lLiTTTI-LER- 367 (441)
T COG4098 291 PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKV-EAFRDGKITLLITTTI-LER- 367 (441)
T ss_pred CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHH-HHHHcCceEEEEEeeh-hhc-
Confidence 45677777667777789999999854 5667777778888887666666666666553 4577889999998852 222
Q ss_pred cCCCcccccCccEEEEccccccc
Q 000047 1205 HDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1205 ~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
-+.--+.+..||+--|++-
T Consensus 368 ----GVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 368 ----GVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred ----ccccccceEEEecCCcccc
Confidence 1222346889998878763
No 491
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.30 E-value=2.4e+02 Score=39.62 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1104 SLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1104 sLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
.......+.+|..|+|+|||..|-++-.. .....+|+++|--..
T Consensus 394 ~~a~~~~pVLI~GE~GTGK~~lA~~ih~~---s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 394 MVAQSDSTVLILGETGTGKELIARAIHNL---SGRNNRRMVKMNCAA 437 (686)
T ss_pred HHhCCCCCEEEECCCCcCHHHHHHHHHHh---cCCCCCCeEEEeccc
Confidence 33455678899999999999877544322 123456776664433
No 492
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=32.23 E-value=2.6e+02 Score=29.90 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=38.4
Q ss_pred CCeEEEEEcc------hHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1426 DHRVLFFSTM------TRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1426 GhKVLIFSQf------t~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
.++|+||+.. =..+..+.++|...|+.|..++=....+.|+.+.+....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~ 65 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW 65 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 5799999753 356788999999999999999876667777777766644
No 493
>PRK06620 hypothetical protein; Validated
Probab=32.13 E-value=1.1e+02 Score=36.77 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=51.5
Q ss_pred EEEec-CchHHHHHHHHHH-HC--CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEE
Q 000047 1144 LVVVP-SSVLPGWESEINF-WA--PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYII 1219 (2693)
Q Consensus 1144 LIVVP-tSLL~QW~eEfeK-wa--PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VI 1219 (2693)
+||.+ +.....|..++.. |. |....++++|....-+..+... +....+..+++...... ..+ ...++++
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a-~~~~~~~~~~~~~~~~~----~~~--~~~d~ll 90 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKI-WQNLSNAYIIKDIFFNE----EIL--EKYNAFI 90 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHH-HHhccCCEEcchhhhch----hHH--hcCCEEE
Confidence 77777 4445666666554 53 2124566777665444332221 11222334444332211 111 1348999
Q ss_pred EccccccccccchHHHHHHhh-cccccccccccC
Q 000047 1220 IDEGHRIKNASCKLNADLKHY-QSSHRLLLTGTP 1252 (2693)
Q Consensus 1220 IDEAHRIKN~sSKlsraLk~L-ka~~RLLLTGTP 1252 (2693)
|||+|++. ...+...+..+ ...+.|++|+|-
T Consensus 91 iDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 91 IEDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred Eeccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 99999762 22344444433 445678999984
No 494
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=31.94 E-value=68 Score=38.23 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++-+|++ -||+|||..+-.++..++. ....++||+-|..
T Consensus 24 ~H~~I~G-~TGsGKS~~~~~ll~~l~~--~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIFG-TTGSGKSNTVKVLLEELLK--KKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEEC-CCCCCHHHHHHHHHHHHHh--cCCCCEEEEcCCC
Confidence 3445555 4999999999888888875 3344678888765
No 495
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=31.21 E-value=75 Score=38.43 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=22.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++...|.+|||..-|-.+..+ .....+++|..|.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~---~~~g~~v~vfkp~ 41 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRY---KEAGMKVLVFKPA 41 (201)
T ss_pred EEEccCcCcchHHHHHHHHHH---HHcCCeEEEEecc
Confidence 567889999998655444433 3334557888775
No 496
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.19 E-value=2e+03 Score=32.13 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+|..++|+|||..|-++..+++
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 47889999999999988877665
No 497
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=30.32 E-value=89 Score=41.06 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcC----CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1095 QMSGLRWLVSLYNNQ----LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~----lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+++.-.++.+.+.+ +..+|+.+.|+|||..|+++...| +..-||..++-..+
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL----G~~~PF~~isgSEi 88 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL----GEDVPFVSISGSEI 88 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC----TTTS-EEEEEGGGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh----CCCCCeeEccccee
Confidence 344555556665543 445899999999999998888765 45668877775544
No 498
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=30.01 E-value=1.1e+02 Score=37.35 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCC
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsL 1166 (2693)
+..+...++.-++|+|||+-++-+++..+.. ..|+|.|.-...-..-.+.+..+.-++
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEESPEELLENARSFGWDL 77 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCCHHHHHHHHHHcCCCH
No 499
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=29.79 E-value=78 Score=39.18 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH----HHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG----WESEINFWAPRIHKIVYCGPPEERRRLFKEKIVH 1188 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q----W~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~ 1188 (2693)
|+-..-|+|||...+..+...+...+...-++++....-+.. -...+..+.+....+.+.........+ .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIIL------P 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEE------T
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEe------c
Q ss_pred CCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccc--cccccCCCCCH
Q 000047 1189 QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRL--LLTGTPLQNNL 1257 (2693)
Q Consensus 1189 ~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RL--LLTGTPLQNnL 1257 (2693)
.+..|.+.+...-. ....+....+++|||||+-.+....-.....-......... +.|.||-.++.
T Consensus 75 nG~~i~~~~~~~~~---~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~~~~ 142 (384)
T PF03237_consen 75 NGSRIQFRGADSPD---SGDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNPGGW 142 (384)
T ss_dssp TS-EEEEES--------SHHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSSH
T ss_pred CceEEEEecccccc---ccccccccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCCCCc
No 500
>PRK05973 replicative DNA helicase; Provisional
Probab=29.54 E-value=1e+02 Score=38.05 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
..++..-+..+.-.+|+...|+|||+.++-++...... ..+++++.-...-.+-.+.+..+
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCCHHHHHHHHHHc
Done!