Query 000047
Match_columns 2693
No_of_seqs 591 out of 3038
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1E-76 3.5E-81 783.8 37.8 469 1079-1566 225-712 (800)
2 1z3i_X Similar to RAD54-like; 100.0 3.7E-72 1.3E-76 725.1 39.9 471 1088-1562 53-552 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 4.8E-67 1.6E-71 652.8 36.3 439 1083-1562 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 4.4E-48 1.5E-52 520.3 32.9 446 1089-1561 152-638 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 5.4E-46 1.8E-50 449.1 23.9 436 1089-1556 8-493 (494)
6 4a2p_A RIG-I, retinoic acid in 100.0 5.8E-39 2E-43 400.9 27.8 444 1089-1560 6-529 (556)
7 2fwr_A DNA repair protein RAD2 100.0 1.6E-39 5.3E-44 402.8 20.5 375 1087-1555 90-471 (472)
8 3tbk_A RIG-I helicase domain; 100.0 4.5E-38 1.5E-42 391.6 28.9 446 1089-1560 3-528 (555)
9 4a2q_A RIG-I, retinoic acid in 100.0 2.9E-37 9.8E-42 407.9 37.8 448 1088-1561 246-771 (797)
10 1z5z_A Helicase of the SNF2/RA 100.0 3.2E-38 1.1E-42 370.9 21.3 230 1319-1562 13-248 (271)
11 4a2w_A RIG-I, retinoic acid in 100.0 3.9E-37 1.3E-41 413.2 33.6 452 1088-1561 246-771 (936)
12 2ykg_A Probable ATP-dependent 100.0 3.5E-35 1.2E-39 379.8 27.2 436 1085-1543 8-521 (696)
13 4gl2_A Interferon-induced heli 100.0 5.9E-34 2E-38 368.6 28.5 447 1089-1560 6-541 (699)
14 2oca_A DAR protein, ATP-depend 100.0 6.9E-33 2.4E-37 346.6 26.5 346 1089-1544 112-464 (510)
15 1xti_A Probable ATP-dependent 100.0 3.7E-32 1.3E-36 325.3 29.0 332 1090-1551 30-369 (391)
16 3h1t_A Type I site-specific re 100.0 2.7E-32 9.4E-37 348.3 21.1 355 1088-1535 176-558 (590)
17 1s2m_A Putative ATP-dependent 100.0 1E-30 3.5E-35 314.9 29.8 327 1089-1551 42-376 (400)
18 2j0s_A ATP-dependent RNA helic 100.0 5.4E-31 1.8E-35 318.8 24.7 321 1089-1539 58-384 (410)
19 1hv8_A Putative ATP-dependent 100.0 2.4E-31 8.2E-36 314.0 20.9 314 1089-1539 27-346 (367)
20 3eiq_A Eukaryotic initiation f 100.0 1.5E-31 5.1E-36 322.5 18.7 321 1089-1538 61-387 (414)
21 2z0m_A 337AA long hypothetical 100.0 2.6E-30 8.9E-35 302.3 23.8 314 1089-1548 15-334 (337)
22 3pey_A ATP-dependent RNA helic 100.0 4.4E-30 1.5E-34 306.1 25.8 314 1089-1532 26-352 (395)
23 1fuu_A Yeast initiation factor 100.0 2.7E-31 9.4E-36 317.6 14.6 319 1089-1538 42-366 (394)
24 3hgt_A HDA1 complex subunit 3; 100.0 7.3E-31 2.5E-35 314.3 16.2 210 1331-1549 20-248 (328)
25 2i4i_A ATP-dependent RNA helic 100.0 5.7E-29 2E-33 300.8 26.5 320 1089-1538 36-383 (417)
26 2db3_A ATP-dependent RNA helic 100.0 9.7E-29 3.3E-33 305.7 29.0 316 1089-1536 77-405 (434)
27 3fht_A ATP-dependent RNA helic 100.0 2.4E-28 8.3E-33 293.9 28.2 331 1089-1551 46-391 (412)
28 1oyw_A RECQ helicase, ATP-depe 100.0 2.7E-27 9.3E-32 300.4 25.8 307 1089-1532 24-339 (523)
29 3oiy_A Reverse gyrase helicase 100.0 5E-27 1.7E-31 286.2 26.8 318 1089-1553 20-376 (414)
30 3sqw_A ATP-dependent RNA helic 99.9 2.5E-26 8.7E-31 293.4 25.9 340 1089-1550 42-408 (579)
31 3i5x_A ATP-dependent RNA helic 99.9 3.8E-26 1.3E-30 289.2 25.4 339 1089-1549 93-458 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 4.5E-26 1.5E-30 293.4 25.5 311 1089-1532 43-370 (591)
33 3fho_A ATP-dependent RNA helic 99.9 2.6E-27 8.7E-32 298.9 11.5 315 1090-1532 141-466 (508)
34 3fmp_B ATP-dependent RNA helic 99.9 1.2E-26 4.3E-31 288.5 12.1 314 1089-1531 113-441 (479)
35 2eyq_A TRCF, transcription-rep 99.9 7.2E-25 2.5E-29 299.8 28.1 310 1088-1537 601-921 (1151)
36 2xgj_A ATP-dependent RNA helic 99.9 2.7E-24 9.3E-29 290.8 28.2 362 1087-1539 83-500 (1010)
37 1gm5_A RECG; helicase, replica 99.9 1.6E-24 5.6E-29 285.9 14.2 307 1089-1532 367-693 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 2.2E-23 7.6E-28 284.1 24.1 368 1088-1542 182-601 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.9 5E-23 1.7E-27 268.9 25.4 329 1090-1539 30-409 (715)
40 2p6r_A Afuhel308 helicase; pro 99.9 2.7E-23 9.2E-28 271.4 22.0 323 1090-1542 25-392 (702)
41 2zj8_A DNA helicase, putative 99.9 6.2E-23 2.1E-27 268.6 21.8 323 1090-1542 23-391 (720)
42 4a4z_A Antiviral helicase SKI2 99.9 3.4E-22 1.2E-26 270.3 28.7 375 1088-1546 37-500 (997)
43 4ddu_A Reverse gyrase; topoiso 99.9 2.4E-21 8.3E-26 264.2 26.2 320 1088-1555 76-505 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.1E-20 3.9E-25 255.4 26.9 350 1089-1536 270-707 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 2.7E-20 9.1E-25 253.4 23.9 317 1089-1554 56-468 (1054)
46 1tf5_A Preprotein translocase 99.8 7.9E-18 2.7E-22 221.0 27.6 117 1408-1529 414-538 (844)
47 2v6i_A RNA helicase; membrane, 99.8 4.6E-19 1.6E-23 220.3 14.5 100 1425-1532 170-287 (431)
48 2jlq_A Serine protease subunit 99.8 6.5E-19 2.2E-23 219.9 10.4 94 1425-1526 187-300 (451)
49 1yks_A Genome polyprotein [con 99.8 1E-18 3.5E-23 217.8 11.1 93 1425-1525 176-287 (440)
50 2wv9_A Flavivirin protease NS2 99.8 3.8E-19 1.3E-23 232.2 7.4 128 1425-1562 409-558 (673)
51 2fsf_A Preprotein translocase 99.7 4.9E-18 1.7E-22 222.5 16.9 117 1408-1529 423-576 (853)
52 1nkt_A Preprotein translocase 99.7 8.2E-16 2.8E-20 202.0 35.3 116 1408-1528 442-609 (922)
53 2z83_A Helicase/nucleoside tri 99.7 2.1E-18 7.1E-23 216.0 9.5 104 1426-1538 190-313 (459)
54 2whx_A Serine protease/ntpase/ 99.7 6.8E-18 2.3E-22 218.8 13.4 128 1425-1561 354-502 (618)
55 1rif_A DAR protein, DNA helica 99.7 4.8E-18 1.7E-22 198.6 10.4 163 1089-1269 112-278 (282)
56 2hjv_A ATP-dependent RNA helic 99.7 6.1E-17 2.1E-21 175.8 14.4 134 1408-1550 19-152 (163)
57 2xau_A PRE-mRNA-splicing facto 99.7 4.4E-17 1.5E-21 216.0 14.6 110 1425-1540 302-445 (773)
58 2jgn_A DBX, DDX3, ATP-dependen 99.7 4.3E-17 1.5E-21 181.3 12.2 126 1407-1538 28-153 (185)
59 1t5i_A C_terminal domain of A 99.7 8.8E-17 3E-21 176.6 14.2 134 1408-1549 15-148 (172)
60 4f92_B U5 small nuclear ribonu 99.7 2.3E-15 7.7E-20 212.8 30.7 324 1089-1538 925-1308(1724)
61 1fuk_A Eukaryotic initiation f 99.7 2.8E-16 9.4E-21 170.7 15.2 124 1411-1541 17-140 (165)
62 3o8b_A HCV NS3 protease/helica 99.7 1.7E-16 5.8E-21 206.3 16.0 261 1108-1541 231-517 (666)
63 2p6n_A ATP-dependent RNA helic 99.7 1.5E-16 5.2E-21 178.1 12.0 123 1408-1538 39-161 (191)
64 1c4o_A DNA nucleotide excision 99.7 2.2E-14 7.4E-19 187.6 33.9 125 1409-1539 422-551 (664)
65 3rc3_A ATP-dependent RNA helic 99.7 2E-15 6.9E-20 197.4 24.2 108 1428-1537 322-444 (677)
66 2fz4_A DNA repair protein RAD2 99.7 2.6E-16 9E-21 181.3 12.4 145 1084-1257 87-233 (237)
67 2rb4_A ATP-dependent RNA helic 99.6 8.3E-16 2.8E-20 168.4 15.3 123 1410-1539 20-148 (175)
68 4f92_B U5 small nuclear ribonu 99.6 4E-15 1.4E-19 210.3 25.7 329 1089-1541 78-476 (1724)
69 3jux_A Protein translocase sub 99.6 1.5E-13 5.3E-18 177.8 36.4 117 1408-1529 456-580 (822)
70 1t6n_A Probable ATP-dependent 99.6 1.5E-15 5.2E-20 170.3 13.9 164 1090-1260 36-207 (220)
71 3eaq_A Heat resistant RNA depe 99.6 2.7E-15 9.1E-20 170.1 15.9 134 1408-1550 15-148 (212)
72 2gxq_A Heat resistant RNA depe 99.6 1.5E-15 5E-20 168.0 13.0 157 1089-1252 22-185 (207)
73 2yjt_D ATP-dependent RNA helic 99.4 4.4E-17 1.5E-21 178.0 0.0 119 1409-1532 15-133 (170)
74 2oxc_A Probable ATP-dependent 99.6 8.6E-15 3E-19 166.2 15.7 155 1090-1252 46-208 (230)
75 1q0u_A Bstdead; DEAD protein, 99.6 5E-15 1.7E-19 166.5 13.2 164 1089-1260 25-198 (219)
76 3b6e_A Interferon-induced heli 99.6 2.4E-15 8.2E-20 166.4 9.3 135 1088-1229 31-177 (216)
77 1vec_A ATP-dependent RNA helic 99.6 8.4E-15 2.9E-19 162.1 13.6 157 1089-1252 24-187 (206)
78 2d7d_A Uvrabc system protein B 99.6 4.1E-13 1.4E-17 175.6 31.0 126 1409-1540 428-558 (661)
79 2pl3_A Probable ATP-dependent 99.5 2.2E-14 7.4E-19 162.8 14.6 156 1089-1252 46-212 (236)
80 1wrb_A DJVLGB; RNA helicase, D 99.5 2.8E-14 9.7E-19 163.7 15.7 157 1089-1252 44-219 (253)
81 1qde_A EIF4A, translation init 99.5 2.2E-14 7.5E-19 161.0 13.8 157 1089-1253 35-197 (224)
82 3ber_A Probable ATP-dependent 99.5 2.8E-14 9.6E-19 164.9 14.9 158 1089-1253 64-228 (249)
83 3i32_A Heat resistant RNA depe 99.5 2.7E-14 9.3E-19 170.9 15.0 125 1408-1539 12-136 (300)
84 3bor_A Human initiation factor 99.5 2E-14 6.7E-19 164.3 11.4 159 1089-1253 51-215 (237)
85 3dkp_A Probable ATP-dependent 99.5 2.6E-13 8.9E-18 154.8 14.4 158 1089-1252 50-220 (245)
86 3iuy_A Probable ATP-dependent 99.5 2.2E-13 7.7E-18 153.8 13.5 157 1089-1252 41-208 (228)
87 3fe2_A Probable ATP-dependent 99.4 1E-12 3.5E-17 150.3 13.2 157 1089-1252 50-217 (242)
88 2vl7_A XPD; helicase, unknown 99.4 3.4E-11 1.2E-15 154.1 27.7 92 1413-1511 370-466 (540)
89 3ly5_A ATP-dependent RNA helic 99.4 1.5E-12 5.2E-17 151.5 13.6 158 1089-1253 75-243 (262)
90 2ipc_A Preprotein translocase 99.2 3.4E-10 1.1E-14 149.3 24.0 150 1088-1265 77-240 (997)
91 3fmo_B ATP-dependent RNA helic 99.2 2.3E-11 7.8E-16 144.9 11.7 156 1089-1252 113-277 (300)
92 3crv_A XPD/RAD3 related DNA he 99.2 5.1E-10 1.7E-14 143.5 20.9 134 1089-1228 2-187 (551)
93 4a15_A XPD helicase, ATP-depen 99.0 3.4E-08 1.2E-12 128.8 26.2 83 1089-1173 2-87 (620)
94 3llm_A ATP-dependent RNA helic 98.6 9.6E-08 3.3E-12 109.4 12.4 149 1089-1252 60-218 (235)
95 4b3f_X DNA-binding protein smu 97.3 0.0015 5.2E-08 85.7 14.6 72 1086-1163 185-257 (646)
96 3upu_A ATP-dependent DNA helic 96.9 0.0046 1.6E-07 78.0 13.9 64 1089-1154 24-88 (459)
97 2gk6_A Regulator of nonsense t 96.8 0.0063 2.2E-07 79.8 14.3 150 1089-1254 179-375 (624)
98 3e1s_A Exodeoxyribonuclease V, 96.7 0.0042 1.4E-07 80.9 11.5 131 1088-1254 187-317 (574)
99 2wjy_A Regulator of nonsense t 96.5 0.012 4.2E-07 79.3 14.0 149 1089-1254 355-551 (800)
100 2xzl_A ATP-dependent helicase 96.4 0.013 4.3E-07 79.2 13.5 149 1089-1254 359-553 (802)
101 1w36_D RECD, exodeoxyribonucle 95.8 0.02 6.8E-07 75.0 10.5 144 1092-1255 151-301 (608)
102 2orw_A Thymidine kinase; TMTK, 94.4 0.073 2.5E-06 59.6 8.2 35 1112-1149 6-40 (184)
103 2o0j_A Terminase, DNA packagin 93.8 0.61 2.1E-05 58.3 15.3 154 1089-1266 162-325 (385)
104 3cpe_A Terminase, DNA packagin 93.1 0.38 1.3E-05 62.8 12.7 146 1089-1255 162-316 (592)
105 2b8t_A Thymidine kinase; deoxy 92.6 0.19 6.4E-06 58.5 7.7 40 1108-1150 11-50 (223)
106 3lfu_A DNA helicase II; SF1 he 92.3 0.24 8.1E-06 64.5 9.0 67 1090-1162 9-77 (647)
107 1a5t_A Delta prime, HOLB; zinc 92.3 0.35 1.2E-05 58.5 9.9 45 1091-1135 3-50 (334)
108 1l8q_A Chromosomal replication 92.2 0.64 2.2E-05 55.5 11.9 44 1110-1156 38-81 (324)
109 3syl_A Protein CBBX; photosynt 91.4 0.21 7.3E-06 58.7 6.5 41 1111-1151 69-110 (309)
110 2chg_A Replication factor C sm 90.7 1.4 4.8E-05 48.0 11.7 24 1111-1134 40-63 (226)
111 2j9r_A Thymidine kinase; TK1, 90.6 0.57 1.9E-05 54.4 8.8 35 1113-1150 32-66 (214)
112 1xx6_A Thymidine kinase; NESG, 90.5 0.76 2.6E-05 52.2 9.6 34 1113-1149 12-45 (191)
113 3bos_A Putative DNA replicatio 90.5 0.73 2.5E-05 51.4 9.4 40 1096-1135 37-78 (242)
114 3u61_B DNA polymerase accessor 89.9 0.48 1.7E-05 56.4 7.8 41 1214-1254 105-147 (324)
115 1iqp_A RFCS; clamp loader, ext 88.2 1.4 4.9E-05 51.6 10.0 24 1111-1134 48-71 (327)
116 1jbk_A CLPB protein; beta barr 88.0 2 6.9E-05 45.6 10.2 26 1110-1135 44-69 (195)
117 3ec2_A DNA replication protein 87.8 4 0.00014 44.4 12.6 43 1092-1134 16-63 (180)
118 2w58_A DNAI, primosome compone 87.6 2.4 8.2E-05 46.9 10.8 25 1110-1134 55-79 (202)
119 2gno_A DNA polymerase III, gam 87.5 1.1 3.7E-05 54.2 8.6 38 1095-1132 2-41 (305)
120 3vkw_A Replicase large subunit 87.3 0.72 2.5E-05 58.7 7.2 106 1113-1254 165-271 (446)
121 3n70_A Transport activator; si 87.3 0.45 1.5E-05 50.7 4.6 45 1100-1147 15-59 (145)
122 1sxj_D Activator 1 41 kDa subu 86.8 0.95 3.2E-05 53.9 7.6 25 1110-1134 59-83 (353)
123 2bjv_A PSP operon transcriptio 86.5 1.1 3.8E-05 51.9 7.7 48 1100-1150 20-67 (265)
124 1njg_A DNA polymerase III subu 86.5 2.1 7.1E-05 47.1 9.5 43 1092-1134 28-70 (250)
125 2p65_A Hypothetical protein PF 86.4 1.5 5.2E-05 46.7 8.1 27 1109-1135 43-69 (187)
126 2orv_A Thymidine kinase; TP4A 86.1 2 6.7E-05 50.7 9.4 34 1113-1149 23-56 (234)
127 3uk6_A RUVB-like 2; hexameric 86.0 0.66 2.3E-05 55.9 5.6 57 1090-1150 47-107 (368)
128 3h4m_A Proteasome-activating n 84.2 1.5 5.2E-05 51.0 7.4 41 1108-1154 50-90 (285)
129 2z4s_A Chromosomal replication 83.8 4.1 0.00014 51.5 11.5 39 1110-1149 131-169 (440)
130 1ofh_A ATP-dependent HSL prote 82.3 3 0.0001 48.7 8.9 25 1109-1133 50-74 (310)
131 1jr3_A DNA polymerase III subu 82.0 4.3 0.00015 48.7 10.3 22 1112-1133 41-62 (373)
132 2qz4_A Paraplegin; AAA+, SPG7, 82.0 5.4 0.00019 45.5 10.7 36 1110-1151 40-75 (262)
133 2qp9_X Vacuolar protein sortin 81.4 2.3 7.8E-05 52.1 7.8 36 1110-1151 85-120 (355)
134 3eie_A Vacuolar protein sortin 81.2 1.6 5.5E-05 52.4 6.2 40 1110-1155 52-91 (322)
135 3vfd_A Spastin; ATPase, microt 81.2 4 0.00014 50.3 9.9 41 1109-1155 148-188 (389)
136 3te6_A Regulatory protein SIR3 80.7 5.8 0.0002 48.5 10.8 44 1093-1136 26-72 (318)
137 2v1u_A Cell division control p 80.6 1.5 5.2E-05 52.5 5.8 28 1108-1135 43-70 (387)
138 3e2i_A Thymidine kinase; Zn-bi 79.9 4.2 0.00014 47.6 8.7 34 1113-1149 32-65 (219)
139 2r2a_A Uncharacterized protein 79.1 1.2 3.9E-05 51.0 3.8 22 1112-1133 8-29 (199)
140 1sxj_C Activator 1 40 kDa subu 79.0 2.4 8E-05 51.2 6.7 40 1095-1134 30-71 (340)
141 3co5_A Putative two-component 78.4 0.56 1.9E-05 50.0 0.9 24 1106-1129 24-47 (143)
142 1sxj_A Activator 1 95 kDa subu 78.4 7.7 0.00026 49.8 11.5 24 1110-1133 78-101 (516)
143 2qby_B CDC6 homolog 3, cell di 76.9 4.4 0.00015 48.8 8.3 45 1092-1136 25-72 (384)
144 1ojl_A Transcriptional regulat 76.8 3.8 0.00013 49.2 7.6 43 1106-1151 22-64 (304)
145 1sxj_B Activator 1 37 kDa subu 76.4 2.8 9.7E-05 49.0 6.2 24 1111-1134 44-67 (323)
146 1w4r_A Thymidine kinase; type 76.3 4.9 0.00017 46.1 7.9 34 1113-1149 24-57 (195)
147 1xwi_A SKD1 protein; VPS4B, AA 75.6 7.2 0.00025 47.1 9.6 39 1110-1153 46-84 (322)
148 1hqc_A RUVB; extended AAA-ATPa 75.2 11 0.00036 44.6 10.7 25 1109-1133 38-62 (324)
149 1fnn_A CDC6P, cell division co 73.2 16 0.00054 43.9 11.7 23 1111-1133 46-68 (389)
150 3pfi_A Holliday junction ATP-d 72.8 19 0.00065 42.9 12.1 22 1110-1131 56-77 (338)
151 2r6a_A DNAB helicase, replicat 72.7 1.9E+02 0.0066 36.5 21.7 58 1098-1157 192-249 (454)
152 2chq_A Replication factor C sm 72.6 0.93 3.2E-05 53.0 0.8 24 1111-1134 40-63 (319)
153 3k1j_A LON protease, ATP-depen 72.2 3.7 0.00013 53.8 6.3 60 1095-1154 46-116 (604)
154 1sxj_E Activator 1 40 kDa subu 71.0 6.7 0.00023 47.0 7.7 40 1095-1134 19-61 (354)
155 3d8b_A Fidgetin-like protein 1 69.0 4.7 0.00016 49.3 5.9 41 1109-1155 117-157 (357)
156 3cf0_A Transitional endoplasmi 68.9 11 0.00037 44.9 8.8 38 1109-1152 49-86 (301)
157 3t15_A Ribulose bisphosphate c 68.8 5 0.00017 47.8 5.9 39 1110-1154 37-75 (293)
158 2zan_A Vacuolar protein sortin 68.6 6.8 0.00023 49.5 7.3 41 1110-1155 168-208 (444)
159 2kjq_A DNAA-related protein; s 68.3 8.6 0.00029 41.6 7.1 27 1108-1134 35-61 (149)
160 2qby_A CDC6 homolog 1, cell di 67.2 13 0.00043 44.5 9.0 28 1109-1136 45-72 (386)
161 3hu3_A Transitional endoplasmi 67.0 6 0.0002 50.9 6.5 35 1109-1149 238-272 (489)
162 3pvs_A Replication-associated 65.6 9.1 0.00031 48.7 7.6 22 1111-1132 52-73 (447)
163 1gm5_A RECG; helicase, replica 63.9 16 0.00056 49.6 10.0 95 1408-1505 399-498 (780)
164 1d2n_A N-ethylmaleimide-sensit 63.2 11 0.00036 44.0 7.0 23 1110-1132 65-87 (272)
165 3hjh_A Transcription-repair-co 63.0 23 0.00078 45.7 10.6 86 1111-1204 16-116 (483)
166 3b9p_A CG5977-PA, isoform A; A 62.6 16 0.00055 42.7 8.5 36 1109-1150 54-89 (297)
167 3oiy_A Reverse gyrase helicase 59.3 27 0.00092 42.8 10.0 94 1408-1503 46-145 (414)
168 2q6t_A DNAB replication FORK h 59.2 24 0.00081 44.5 9.7 60 1098-1159 189-248 (444)
169 2cvh_A DNA repair and recombin 58.2 27 0.00092 38.6 8.9 54 1098-1157 8-64 (220)
170 1um8_A ATP-dependent CLP prote 57.5 22 0.00075 43.4 8.8 25 1109-1133 72-96 (376)
171 1uaa_A REP helicase, protein ( 57.2 12 0.00041 49.5 6.8 68 1090-1163 2-71 (673)
172 4ddu_A Reverse gyrase; topoiso 54.7 31 0.0011 48.6 10.5 95 1407-1504 102-203 (1104)
173 1r6b_X CLPA protein; AAA+, N-t 54.5 21 0.00071 47.8 8.5 27 1109-1135 207-233 (758)
174 2ce7_A Cell division protein F 53.2 42 0.0014 43.2 10.6 36 1110-1151 50-85 (476)
175 2r8r_A Sensor protein; KDPD, P 52.9 11 0.00036 44.4 4.7 28 1110-1137 7-34 (228)
176 2iut_A DNA translocase FTSK; n 52.1 18 0.00062 47.6 7.1 42 1109-1150 214-256 (574)
177 3pxi_A Negative regulator of g 51.7 7.4 0.00025 52.2 3.6 34 1111-1147 523-556 (758)
178 1w5s_A Origin recognition comp 51.3 13 0.00045 45.1 5.4 44 1092-1135 27-78 (412)
179 1qvr_A CLPB protein; coiled co 51.0 46 0.0016 45.5 11.1 27 1109-1135 191-217 (854)
180 2dr3_A UPF0273 protein PH0284; 49.4 72 0.0025 35.8 10.7 49 1109-1160 23-71 (247)
181 3bh0_A DNAB-like replicative h 49.1 23 0.00079 42.7 7.0 59 1098-1159 57-115 (315)
182 3kl4_A SRP54, signal recogniti 46.8 45 0.0015 42.5 9.3 35 1112-1148 100-134 (433)
183 1pjr_A PCRA; DNA repair, DNA r 45.6 27 0.00093 46.8 7.5 58 1090-1153 11-69 (724)
184 2eyq_A TRCF, transcription-rep 45.4 56 0.0019 46.3 10.8 94 1408-1503 634-731 (1151)
185 3sxu_A DNA polymerase III subu 45.3 81 0.0028 34.8 9.9 81 1409-1508 22-106 (150)
186 3bgw_A DNAB-like replicative h 42.2 25 0.00087 44.6 6.1 59 1097-1158 185-243 (444)
187 1ny5_A Transcriptional regulat 41.6 62 0.0021 40.1 9.3 45 1105-1152 156-200 (387)
188 4b4t_J 26S protease regulatory 41.5 23 0.0008 44.8 5.5 45 1109-1159 182-226 (405)
189 1xp8_A RECA protein, recombina 41.3 52 0.0018 40.9 8.5 46 1108-1156 73-118 (366)
190 2qgz_A Helicase loader, putati 41.2 38 0.0013 40.8 7.1 26 1109-1134 152-177 (308)
191 1g5t_A COB(I)alamin adenosyltr 40.8 35 0.0012 39.2 6.4 35 1109-1146 28-62 (196)
192 4dzz_A Plasmid partitioning pr 40.4 42 0.0014 36.8 6.8 38 1116-1156 9-48 (206)
193 4a1f_A DNAB helicase, replicat 39.0 32 0.0011 42.4 6.1 58 1098-1158 35-92 (338)
194 4b4t_L 26S protease subunit RP 38.0 28 0.00094 44.5 5.5 43 1110-1158 216-258 (437)
195 2c9o_A RUVB-like 1; hexameric 33.8 42 0.0014 42.4 6.2 59 1093-1155 43-105 (456)
196 4b4t_I 26S protease regulatory 33.7 38 0.0013 43.3 5.6 45 1109-1159 216-260 (437)
197 2px0_A Flagellar biosynthesis 33.1 79 0.0027 38.0 8.1 25 1111-1135 107-131 (296)
198 3dm5_A SRP54, signal recogniti 31.8 1E+02 0.0036 39.4 9.2 50 1112-1164 103-152 (443)
199 4b4t_M 26S protease regulatory 31.4 24 0.00081 45.0 3.3 44 1109-1158 215-258 (434)
200 1wp9_A ATP-dependent RNA helic 31.3 1.2E+02 0.0041 36.8 9.3 89 1408-1503 33-131 (494)
201 4b4t_H 26S protease regulatory 30.9 31 0.0011 44.4 4.3 44 1109-1158 243-286 (467)
202 2j48_A Two-component sensor ki 30.8 61 0.0021 31.1 5.5 44 1426-1473 25-68 (119)
203 3u4q_A ATP-dependent helicase/ 30.4 56 0.0019 46.6 7.1 60 1088-1153 8-70 (1232)
204 2z43_A DNA repair and recombin 30.4 1E+02 0.0036 37.1 8.5 54 1098-1151 95-152 (324)
205 1vma_A Cell division protein F 30.2 89 0.003 37.9 7.9 32 1113-1147 108-139 (306)
206 1lv7_A FTSH; alpha/beta domain 30.1 73 0.0025 36.5 6.8 36 1109-1150 45-80 (257)
207 2zr9_A Protein RECA, recombina 29.6 1.1E+02 0.0036 37.8 8.5 45 1108-1155 60-104 (349)
208 1t6n_A Probable ATP-dependent 29.6 2.4E+02 0.0082 31.2 10.7 90 1408-1503 61-164 (220)
209 2zpa_A Uncharacterized protein 29.6 53 0.0018 44.1 6.2 55 1089-1151 174-228 (671)
210 1n0w_A DNA repair protein RAD5 29.2 2E+02 0.0068 32.1 10.1 42 1109-1150 24-68 (243)
211 2dhr_A FTSH; AAA+ protein, hex 29.2 2.2E+02 0.0076 36.9 11.7 34 1110-1149 65-98 (499)
212 3cg4_A Response regulator rece 29.2 2.2E+02 0.0076 28.6 9.6 29 1426-1454 7-35 (142)
213 3u4q_B ATP-dependent helicase/ 29.0 57 0.002 46.1 6.8 43 1112-1155 5-47 (1166)
214 3a10_A Response regulator; pho 28.1 1.1E+02 0.0038 29.7 6.9 15 1506-1520 100-114 (116)
215 2oxc_A Probable ATP-dependent 26.2 2E+02 0.0069 32.3 9.5 61 1408-1468 71-139 (230)
216 4b4t_K 26S protease regulatory 26.1 32 0.0011 43.7 3.2 41 1110-1156 207-247 (428)
217 3g5j_A Putative ATP/GTP bindin 25.7 74 0.0025 32.7 5.3 51 1411-1461 74-125 (134)
218 2zts_A Putative uncharacterize 25.6 1E+02 0.0034 34.6 6.8 49 1110-1160 31-79 (251)
219 3fe2_A Probable ATP-dependent 25.0 2.9E+02 0.01 31.3 10.6 89 1408-1503 76-182 (242)
220 3eqz_A Response regulator; str 24.6 2.1E+02 0.0073 28.3 8.4 75 1451-1525 47-127 (135)
221 3gk5_A Uncharacterized rhodane 24.3 74 0.0025 32.3 4.9 46 1415-1461 45-90 (108)
222 3dmn_A Putative DNA helicase; 24.3 2.7E+02 0.0094 30.5 9.8 79 1413-1509 48-126 (174)
223 2v1x_A ATP-dependent DNA helic 24.1 2E+02 0.0067 37.9 10.0 62 1426-1487 84-145 (591)
224 3ber_A Probable ATP-dependent 24.1 3E+02 0.01 31.6 10.6 89 1408-1503 90-192 (249)
225 3nhm_A Response regulator; pro 23.7 2.2E+02 0.0074 28.3 8.2 92 1425-1522 26-121 (133)
226 3ipz_A Monothiol glutaredoxin- 23.5 2.1E+02 0.0071 29.2 8.1 48 1426-1473 17-70 (109)
227 3i42_A Response regulator rece 23.0 1.2E+02 0.0041 30.1 6.1 102 1414-1524 18-123 (127)
228 3lte_A Response regulator; str 22.7 1.2E+02 0.004 30.3 6.0 29 1426-1454 6-34 (132)
229 1xti_A Probable ATP-dependent 22.5 3.3E+02 0.011 32.5 10.8 91 1408-1503 55-158 (391)
230 1u94_A RECA protein, recombina 22.5 1.7E+02 0.0056 36.3 8.4 42 1108-1152 62-103 (356)
231 2gxq_A Heat resistant RNA depe 22.0 3.4E+02 0.012 29.5 10.1 89 1408-1503 48-150 (207)
232 3gx8_A Monothiol glutaredoxin- 22.0 3.2E+02 0.011 28.6 9.3 48 1426-1473 15-71 (121)
233 2r44_A Uncharacterized protein 21.6 50 0.0017 39.4 3.5 37 1096-1132 33-69 (331)
234 3zyw_A Glutaredoxin-3; metal b 20.9 2.5E+02 0.0086 28.9 8.1 47 1426-1472 15-67 (111)
235 3hws_A ATP-dependent CLP prote 20.9 1E+02 0.0036 37.3 6.2 35 1109-1149 51-85 (363)
236 1gku_B Reverse gyrase, TOP-RG; 20.8 1.6E+02 0.0055 41.4 8.7 92 1407-1503 80-181 (1054)
237 2i1q_A DNA repair and recombin 20.6 1.3E+02 0.0044 36.0 6.8 35 1098-1132 86-121 (322)
238 3iuy_A Probable ATP-dependent 20.2 2E+02 0.0067 32.2 7.8 72 1425-1503 93-173 (228)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-76 Score=783.83 Aligned_cols=469 Identities=44% Similarity=0.741 Sum_probs=398.8
Q ss_pred cccCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1079 VSEQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1079 v~eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+|+|+++.+++......+|+|||||.+++.||..|
T Consensus 225 ~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E 304 (800)
T 3mwy_W 225 LSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT 304 (800)
T ss_dssp CSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHH
T ss_pred cccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhh---------hhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEK---------IVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~---------i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~ 1229 (2693)
|.+|+|.+.+++|+|....+..+.... .....++|+||||+++.+ +...|..+.|++|||||||++||.
T Consensus 305 ~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~--~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 305 FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK--DRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHH--THHHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHh--hHHHHhcCCcceeehhhhhhhcCc
Confidence 999999999999999988776544322 234578999999999987 456788889999999999999999
Q ss_pred cchHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHH
Q 000047 1230 SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIIN 1309 (2693)
Q Consensus 1230 sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~ 1309 (2693)
.+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-... . ......+.
T Consensus 383 ~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~--------~---------~~~~~~~~ 445 (800)
T 3mwy_W 383 ESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ--------D---------EEQEEYIH 445 (800)
T ss_dssp SSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC--------T---------THHHHHHH
T ss_pred hhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc--------c---------hhHHHHHH
Confidence 999999999999999999999999999999999999999999987665531110 0 01223567
Q ss_pred HHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc-c---CCCCCcchhHHHHHHHHhhCCccc
Q 000047 1310 RLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS-I---GNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1310 RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s-i---~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
+|+.+++||++||++.++...||++.+.++.|.|++.|+.+|+.+...... + .......+++.++.||++|+||++
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l 525 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYL 525 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhh
Confidence 899999999999999999999999999999999999999999988654221 1 112234688999999999999999
Q ss_pred cchhhhhhhccCCCC------CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC
Q 000047 1386 SQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH 1459 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~------~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGS 1459 (2693)
+....+......... ....++..++|+.+|.++|.++...++||||||+|+.++++|+++|..+|+.|++|+|+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~ 605 (800)
T 3mwy_W 526 FDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGT 605 (800)
T ss_dssp SSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTT
T ss_pred hcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 876544332211111 11245678999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1460 TSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1460 TS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++..+|++++++|+.++.+.+|||+||++||+||||+.|++||+||++|||..++||+||+||+||+++|+||+|++.+|
T Consensus 606 ~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 606 VPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp SCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred CCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCcccC
Q 000047 1540 VEEQVRASAEHKLGVANQSITAGFFDN 1566 (2693)
Q Consensus 1540 IEEkIleraekKl~Li~kVIqaG~fD~ 1566 (2693)
+||+|++++..|+.+++.+|+.|..+.
T Consensus 686 iEe~i~~~~~~K~~l~~~vi~~~~~~~ 712 (800)
T 3mwy_W 686 VEEEVLERARKKMILEYAIISLGVTDG 712 (800)
T ss_dssp HHHHHHHHHHHHTTSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 999999999999999999998876543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.7e-72 Score=725.11 Aligned_cols=471 Identities=31% Similarity=0.511 Sum_probs=395.3
Q ss_pred CCcchHHHHHHHHHHHHHh-----hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecCchHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy-----~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPtSLL~QW~eE 1158 (2693)
...|||||++||+||+..+ .++.||||||+||||||+|+|+++.+++..... .+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3689999999999999876 456789999999999999999999998876543 3458999999999999999
Q ss_pred HHHHCCC-CcEEEEcC-ChHHHHHHHHhhhhc----CCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch
Q 000047 1159 INFWAPR-IHKIVYCG-PPEERRRLFKEKIVH----QKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK 1232 (2693)
Q Consensus 1159 feKwaPs-LkVIvy~G-s~~eRk~l~ke~i~~----~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK 1232 (2693)
|.+|++. +.++.+.+ ....+...+...... ..++|+||||+.+... ...+....|++|||||||++||..++
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~--~~~l~~~~~~~vI~DEaH~ikn~~~~ 210 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSDNQ 210 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTCHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh--HHHhhcCCccEEEEECceecCChhhH
Confidence 9999875 55666655 443333332222221 2589999999999874 35678889999999999999999999
Q ss_pred HHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHH
Q 000047 1233 LNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLH 1312 (2693)
Q Consensus 1233 lsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLh 1312 (2693)
.++++..+.+.+||+|||||++|++.|||++|+||.|++|++...|.++|..|+.......... .........+.+|+
T Consensus 211 ~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 211 TYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH--HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876543322111 11223344577899
Q ss_pred HHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccC----CCCCcchhHHHHHHHHhhCCccccch
Q 000047 1313 QVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIG----NSKGRSVHNSVMELRNICNHPYLSQL 1388 (2693)
Q Consensus 1313 kVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~----~sk~rslln~LmqLRKICnHPyL~~~ 1388 (2693)
.++.||++||++.++...||++.+.++.|+|++.|+.+|+.+........ .......+..++.||++|+||+++..
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999876543221 11223567889999999999998743
Q ss_pred hhhh-------hhccCCCCCC--ChhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeC
Q 000047 1389 HAEE-------VDTLIPKHYL--PPIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDG 1458 (2693)
Q Consensus 1389 ~~EE-------id~li~~~~l--~~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGikylRLDG 1458 (2693)
.... ....++..+. ......++|+.+|..+|..+.. .++|+||||+++.++++|+.+|...|+.|++|||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G 448 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG 448 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeC
Confidence 2111 0111111111 1123568999999999998864 6899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++.++|++++++|++++...++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+
T Consensus 449 ~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 449 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999998877789999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1539 TVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1539 SIEEkIleraekKl~Li~kVIqaG 1562 (2693)
|+||+|++++..|..+++.+++++
T Consensus 529 tiEe~i~~~~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 529 TIEEKILQRQAHKKALSSCVVDEE 552 (644)
T ss_dssp SHHHHHHHHHHHHHHTSCCCCSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999765
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.8e-67 Score=652.78 Aligned_cols=439 Identities=31% Similarity=0.562 Sum_probs=381.3
Q ss_pred CCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1083 PTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1083 P~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
|..+ ...|||||.+|+.||..++..+.+|||||+||+|||+++++++..+.... ..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~-~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNI-KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSC-SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhh-hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccHHHHHHHHHHHHHH
Confidence 4444 37899999999999999888899999999999999999999998887543 456899999999999999999999
Q ss_pred CCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcc
Q 000047 1163 APRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQS 1242 (2693)
Q Consensus 1163 aPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka 1242 (2693)
+|.+++.+|.|.... .....++|+|+||+.+.+.. .+....|++|||||||+++|..++.++++..+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~---~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~ 177 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDT---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 177 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCH---HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccc---hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhcc
Confidence 999999999887521 22357899999999998643 3777899999999999999999999999999999
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.++|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.||++||
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~--------------~~~~~~l~~~l~~~~lrr 243 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFILRR 243 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEECC
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc--------------HHHHHHHHHHHhhHeeee
Confidence 999999999999999999999999999999999999999987765421 123467889999999999
Q ss_pred hHhH--HhhcCccceeEeeeccccHHHHHHHHHHHHHhhcc-CCC----CCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1323 LKHK--VENELPEKIERLVRCEASAYQKLLMKRVEENLGSI-GNS----KGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1323 tKkD--VekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si-~~s----k~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
++.+ +...||++.+..+.|+|++.|+.+|+.+....... ... ....+...++.||++|+||++....
T Consensus 244 ~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~------ 317 (500)
T 1z63_A 244 TKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG------ 317 (500)
T ss_dssp CTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS------
T ss_pred cccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc------
Confidence 9976 67899999999999999999999999876553221 111 1124677789999999999886421
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQ 1474 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~ 1474 (2693)
......++|+..|.++|.++...++|+||||+++.++++|.++|... |+.+.+++|+++.++|++++++|++
T Consensus 318 -------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 318 -------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp -------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred -------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC
Confidence 12345688999999999999999999999999999999999999885 9999999999999999999999987
Q ss_pred CCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 000047 1475 QDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGV 1554 (2693)
Q Consensus 1475 ~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~L 1554 (2693)
+. .+.+||++|+++|+||||+.|++||+||++|||..++||+||+||+||+++|+||+|++.+|+||+|++++..|..+
T Consensus 391 ~~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 391 NP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp CT-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CC-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 63 34578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccC
Q 000047 1555 ANQSITAG 1562 (2693)
Q Consensus 1555 i~kVIqaG 1562 (2693)
++.+++++
T Consensus 470 ~~~~~~~~ 477 (500)
T 1z63_A 470 FKDIISSG 477 (500)
T ss_dssp SSSGGGST
T ss_pred HHHHhhcC
Confidence 99999865
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4.4e-48 Score=520.28 Aligned_cols=446 Identities=17% Similarity=0.193 Sum_probs=331.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcE
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkV 1168 (2693)
.+|+|||++++.|++. ..+.++||||+||+|||+++++++..++..+. .+++|||||.+++.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 6899999999999986 33568899999999999999999998876543 456999999999999999999998 6777
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccch---HHHHHHhh--cc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASCK---LNADLKHY--QS 1242 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sSK---lsraLk~L--ka 1242 (2693)
.+|.|...... ..........++|+|+||+.+.+.... ..+...+|++|||||||+++|..++ .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~-~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEA-QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHH-HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhh-hhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 77766543321 111123345789999999999874332 3466779999999999999997655 47788877 67
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCccc---------CCCCCCc-h----hhhhH--------
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFE---------SNGDNSP-D----EALLS-------- 1300 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e---------~~g~~s~-~----e~~Ls-------- 1300 (2693)
.++|+|||||++|++.|+|++++|+.|..|.+...|..++..... ....... . ...+.
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 889999999999999999999999999999999988876432110 0000000 0 00000
Q ss_pred -H-----HH-HHHHHHHHHHHh-----hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcc
Q 000047 1301 -E-----EE-NLLIINRLHQVL-----RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRS 1368 (2693)
Q Consensus 1301 -e-----Ee-~lliI~RLhkVL-----rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rs 1368 (2693)
. +. .......+..++ ..+++|+++..+ ..+|.+....+.+.++.....+|+...... ......
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~ 461 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMG----ARKSAE 461 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTT----CCSSGG
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhh----hhhhhH
Confidence 0 00 000001122222 234555555555 478888888899999988888887543221 000000
Q ss_pred hhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh
Q 000047 1369 VHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF 1448 (2693)
Q Consensus 1369 lln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~ 1448 (2693)
.. . ..+.+|..... . +.. .....+..+.|+.+|.++|.. ..+.|+||||+++.+++.|.++|..
T Consensus 462 -~~----~-~~~l~pe~~~~---~----l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 462 -DR----A-RDMLYPERIYQ---E----FEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp -GG----T-HHHHCSGGGTT---T----TTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred -HH----H-hhhcChHHHHH---H----hhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 00 0 01122211110 0 000 112345667899999999987 5688999999999999999999984
Q ss_pred -cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc
Q 000047 1449 -KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR 1527 (2693)
Q Consensus 1449 -rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK 1527 (2693)
.|+++..+||+++..+|.+++++|++++..+ .+||+|+++++|||++.|++||+||++|||..|.||+||+||+||++
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCS
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCc
Confidence 6999999999999999999999999876333 46889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1528 DVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1528 eV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
.|.||+++..+++|++|++.+..|+.++...+..
T Consensus 605 ~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 605 DIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp CCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred eEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 9999999999999999999999998777666543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.4e-46 Score=449.07 Aligned_cols=436 Identities=15% Similarity=0.169 Sum_probs=289.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa--Ps 1165 (2693)
.+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. .++.||.++|.+|+ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4799999999999875 3 9999999999999999999888765 234569999998 78899999999998 55
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH--HHHH-hhcc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN--ADLK-HYQS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls--raLk-~Lka 1242 (2693)
..+..++|........ .....++|+|+||+.+........+...+|++|||||||++++...... ..+. ....
T Consensus 81 ~~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 6899999876543221 1123689999999999886655566778899999999999987533221 2222 2346
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCC---CChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIF---NSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF---~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.++|+|||||. ++..+++.++.++....+ .....+...+..+... ......+. .....+...+.+++
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRF----EWVRVDLP-----EIYKEVRKLLREML 226 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCE----EEEEECCC-----HHHHHHHHHHHHHH
T ss_pred CeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCce----eEEecCCc-----HHHHHHHHHHHHHH
Confidence 78999999999 777788777777754322 2221111111111000 00000011 12345667777888
Q ss_pred hhhhHhHHhhcCccceeE-eeeccccHHHHHHHHHHHHH--------------------hhccCCCCCcchhHHHHHHHH
Q 000047 1320 LRRLKHKVENELPEKIER-LVRCEASAYQKLLMKRVEEN--------------------LGSIGNSKGRSVHNSVMELRN 1378 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~-vV~ceLSa~Qk~LYk~Lee~--------------------l~si~~sk~rslln~LmqLRK 1378 (2693)
.+|++......+...... +-...+......++..+... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 888876655443322111 11111111111111111100 000000000112222223333
Q ss_pred hhCCccccchhhhhhhccCCCCCCC----------hhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHH
Q 000047 1379 ICNHPYLSQLHAEEVDTLIPKHYLP----------PIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1379 ICnHPyL~~~~~EEid~li~~~~l~----------~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L 1446 (2693)
.+.|+.... ...+....... .....+.|+..|.++|.++. ..++|+||||+++.+++.|.++|
T Consensus 307 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L 381 (494)
T 1wp9_A 307 EAKAGSTKA-----SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNEL 381 (494)
T ss_dssp HHHTTCCHH-----HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHH
T ss_pred hhccccchh-----hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHH
Confidence 222211100 00000000000 00145679999999999876 57899999999999999999999
Q ss_pred hhcCCeEEEEeC--------CCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhh
Q 000047 1447 TFKQYRYLRLDG--------HTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQA 1518 (2693)
Q Consensus 1447 ~~rGikylRLDG--------STS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIG 1518 (2693)
...|+.+.+++| +++.++|++++++|+++... |||+|+++++||||+.|++||+||++|||..++||+|
T Consensus 382 ~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~G 458 (494)
T 1wp9_A 382 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 458 (494)
T ss_dssp HHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHT
T ss_pred HHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHh
Confidence 999999999999 89999999999999987654 7999999999999999999999999999999999999
Q ss_pred hhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 000047 1519 RAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVAN 1556 (2693)
Q Consensus 1519 RAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~ 1556 (2693)
|+||.|+ +.+|+|++.+++||+++.++..|..+++
T Consensus 459 R~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 459 RTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp TSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred hccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999998 8999999999999999999999987764
No 6
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.8e-39 Score=400.92 Aligned_cols=444 Identities=15% Similarity=0.161 Sum_probs=235.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeKwaP- 1164 (2693)
.+|+|||.+++.+++. +.++|++++||+|||++++.++.+++..... .+.+|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999875 6789999999999999999888877765432 4569999998 778999999999987
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh--
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY-- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L-- 1240 (2693)
++.+..++|........ ......++|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433211 11123589999999999876655555 566799999999999988765 33333222
Q ss_pred -------cccccccccccCCCCCH-------HHHHHHhhhccCCC----CCChhHHHHHhcCcccCCCCCCchhhhhHHH
Q 000047 1241 -------QSSHRLLLTGTPLQNNL-------EELWALLNFLLPNI----FNSSEDFSQWFNKPFESNGDNSPDEALLSEE 1302 (2693)
Q Consensus 1241 -------ka~~RLLLTGTPLQNnL-------eELwSLLnFL~P~i----F~S~k~F~e~F~kP~e~~g~~s~~e~~LseE 1302 (2693)
...++|+|||||..++. ..++.+...+.... ......+..++..|.................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 22568999999988653 33334444444332 2234566666665543221110000000011
Q ss_pred HHHHHHHHHHHHhhh----------------------hhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhc
Q 000047 1303 ENLLIINRLHQVLRP----------------------FVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGS 1360 (2693)
Q Consensus 1303 e~lliI~RLhkVLrP----------------------FLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~s 1360 (2693)
.....+..++.+++. ++....+......+|.+ ..+..+|..+......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 238 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTEH 307 (556)
T ss_dssp HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccccc----------chhHHHHHHHHHHHHH
Confidence 111122333333222 22222222121122211 1111111111100000
Q ss_pred -------cCCCCCcchhHHHHHHHHhhC----Cccccchhhhhh-hccCCC-----CCCChhhhcccHHHHHHHHHHHhh
Q 000047 1361 -------IGNSKGRSVHNSVMELRNICN----HPYLSQLHAEEV-DTLIPK-----HYLPPIVRLCGKLEMLDRLLPKLK 1423 (2693)
Q Consensus 1361 -------i~~sk~rslln~LmqLRKICn----HPyL~~~~~EEi-d~li~~-----~~l~~Lvr~SgKLelLdeLL~kLk 1423 (2693)
............+..+...|. +.+. . ..... ..+... .........++|+..|.++|.+..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~ 385 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT-E-LEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 385 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC-H-HHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC-H-HHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHh
Confidence 000000001111111111111 0000 0 00000 000000 000000123679999999998765
Q ss_pred --cCCCeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeecc
Q 000047 1424 --ATDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1424 --atGhKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrA 1488 (2693)
..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++ +... |||+|++
T Consensus 386 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 462 (556)
T 4a2p_A 386 RYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSV 462 (556)
T ss_dssp HHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC-
T ss_pred cCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcCc
Confidence 66899999999999999999999765 5666777888999999999999987 6554 7999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
+++||||++|++||+||++|||..|+||+|| +| .+++.+|.|++.++++++ +.....|..++..++.
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 55 477889999999999998 6667777777777664
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.6e-39 Score=402.82 Aligned_cols=375 Identities=16% Similarity=0.196 Sum_probs=259.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
.+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||.++|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 457899999999998764 4569999999999999998887765 4579999999 8889999999995 5
Q ss_pred Cc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1166 IH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1166 Lk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
+. +.++.|... ...+|+|+||+.+....+ .+ ..+|++|||||||++.+.... ..+..+.+.+
T Consensus 158 ~~~v~~~~g~~~------------~~~~Ivv~T~~~l~~~~~--~~-~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~ 220 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPF 220 (472)
T ss_dssp GGGEEEBSSSCB------------CCCSEEEEEHHHHHHTHH--HH-TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSE
T ss_pred CcceEEECCCcC------------CcCCEEEEEcHHHHHHHH--Hh-cCCCCEEEEECCcCCCChHHH--HHHHhcCCCe
Confidence 66 788877542 246899999999976432 12 246999999999999987543 4566678889
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
+|+|||||.+++..+ . .|..++.+++.++..
T Consensus 221 ~l~lSATp~~~~~~~----------------~---------------------------------~l~~~~~~~~~~~~~ 251 (472)
T 2fwr_A 221 RLGLTATFEREDGRH----------------E---------------------------------ILKEVVGGKVFELFP 251 (472)
T ss_dssp EEEEESCCCCTTSGG----------------G---------------------------------SHHHHTCCEEEECCH
T ss_pred EEEEecCccCCCCHH----------------H---------------------------------HHHHHhCCeEeecCH
Confidence 999999998654211 0 122333444444434
Q ss_pred hHHhh-cCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhH--HHHHHHHhh-CCccccchhhhhhhccCCCC
Q 000047 1325 HKVEN-ELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHN--SVMELRNIC-NHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1325 kDVek-eLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln--~LmqLRKIC-nHPyL~~~~~EEid~li~~~ 1400 (2693)
.++.. .+++.....+.+.++..++..|..+...+..........+.+ .+..+-.++ ..+......... . .
T Consensus 252 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~ 325 (472)
T 2fwr_A 252 DSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAW-E-----E 325 (472)
T ss_dssp HHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHH-H-----H
T ss_pred HHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHH-H-----H
Confidence 44432 366667777888999988888876544332211111000000 000000000 000000000000 0 0
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
........+.|+..|.++|.. ..++++||||+++..++.|.++|. +..++|.++..+|++++++|+++...
T Consensus 326 ~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~-- 396 (472)
T 2fwr_A 326 ARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR-- 396 (472)
T ss_dssp HHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS--
T ss_pred HHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC--
Confidence 000112356799999999987 458999999999999999999985 45689999999999999999987655
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc-ccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RDVLVLRFETVQTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk-KeV~VyRLIT~gSIEEkIleraekKl~Li 1555 (2693)
+||+|+++++||||+.+++||+||++||+..+.|++||++|.|+. +.|.||+|++.+|+||++.++.+.|..++
T Consensus 397 -vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 397 -AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp -BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred -EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 689999999999999999999999999999999999999999998 78999999999999999999988776553
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=391.55 Aligned_cols=446 Identities=14% Similarity=0.138 Sum_probs=251.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeKwaP- 1164 (2693)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5799999999999874 7889999999999999999888877765432 4569999998 778999999999976
Q ss_pred -CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh--
Q 000047 1165 -RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY-- 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L-- 1240 (2693)
++.+..++|........ .....+.+|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 67888888876432211 11123589999999999876655445 556799999999999988764 33322222
Q ss_pred --------cccccccccccCCCCC-------HHHHHHHhhhccCCCC----CChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 --------QSSHRLLLTGTPLQNN-------LEELWALLNFLLPNIF----NSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 --------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P~iF----~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
...++|+|||||.+++ +..++.++.++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 1246899999999877 3444445555553322 12344554444433221110000000001
Q ss_pred HHHHHHHHHHHHHhhhhhhh-----------------------hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh
Q 000047 1302 EENLLIINRLHQVLRPFVLR-----------------------RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPFLLR-----------------------RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l 1358 (2693)
......+.+++.+++.++-. ..+......++. ......++..+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 304 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMAD----------KEEESRVCKALFLYT 304 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSS----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccc----------hhhHHHHHHHHHHHH
Confidence 11112233344443332210 000000001111 001111111110000
Q ss_pred hcc-------CCCCCcchhHHHHHHHHhh---CCccccchhhhhhhccCCC-----CCCChhhhcccHHHHHHHHHHHhh
Q 000047 1359 GSI-------GNSKGRSVHNSVMELRNIC---NHPYLSQLHAEEVDTLIPK-----HYLPPIVRLCGKLEMLDRLLPKLK 1423 (2693)
Q Consensus 1359 ~si-------~~sk~rslln~LmqLRKIC---nHPyL~~~~~EEid~li~~-----~~l~~Lvr~SgKLelLdeLL~kLk 1423 (2693)
..+ ...........+..+...+ .+..+..........+... .........+.|+..|.++|.++.
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 384 (555)
T 3tbk_A 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEY 384 (555)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHh
Confidence 000 0000000001111111110 0000000000000000000 000001123679999999998875
Q ss_pred c--CCCeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeecc
Q 000047 1424 A--TDHRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1424 a--tGhKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrA 1488 (2693)
. .++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|++ +... |||+|++
T Consensus 385 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~ 461 (555)
T 3tbk_A 385 HLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSV 461 (555)
T ss_dssp HHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCC
T ss_pred ccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcch
Confidence 3 4599999999999999999999876 3456666779999999999999987 5555 7899999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcc
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSIT 1560 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIq 1560 (2693)
+++||||+.|++||+||++|||..|+||+|| |+.+.+.+|.|++.++.++. ......|..++++.+.
T Consensus 462 ~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp TTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999 55588999999999999887 4445556566665553
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.9e-37 Score=407.89 Aligned_cols=448 Identities=14% Similarity=0.134 Sum_probs=245.1
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 46899999999998864 6889999999999999999988887765432 56799999975 78999999999987
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++.+..++|........ .....+++|+|+||+.|........+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999999987443211 11224689999999999876655445 556789999999999998664 33333332
Q ss_pred c--------ccccccccccCCCCC----------HHHHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 Q--------SSHRLLLTGTPLQNN----------LEELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 k--------a~~RLLLTGTPLQNn----------LeELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
. ..++|+|||||.+++ +.+||.+|++- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 2 256899999998754 33444444421 1122233456777776654332111100000011
Q ss_pred HHHHHHHHHHHHHhhhhh----------------------hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHh-
Q 000047 1302 EENLLIINRLHQVLRPFV----------------------LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENL- 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPFL----------------------LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l- 1358 (2693)
......+..++.+++.++ ....+......++... ....+|..+....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICTE 547 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHHH
Confidence 111223344444444332 1111111111112111 1111111110000
Q ss_pred ------hccCCCCCcchhHHHHHHHHhhCCccc--cchhhhhhhccCCCC------CCChhhhcccHHHHHHHHHHHhh-
Q 000047 1359 ------GSIGNSKGRSVHNSVMELRNICNHPYL--SQLHAEEVDTLIPKH------YLPPIVRLCGKLEMLDRLLPKLK- 1423 (2693)
Q Consensus 1359 ------~si~~sk~rslln~LmqLRKICnHPyL--~~~~~EEid~li~~~------~l~~Lvr~SgKLelLdeLL~kLk- 1423 (2693)
..............+..++..|.+..- +..........+... ........++|+..|.++|.+..
T Consensus 548 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~ 627 (797)
T 4a2q_A 548 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYR 627 (797)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhc
Confidence 000000000111122222222211000 000000000000000 00000124679999999998753
Q ss_pred -cCCCeEEEEEcchHHHHHHHHHHhh------------cCCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeeccc
Q 000047 1424 -ATDHRVLFFSTMTRLLDVMEDYLTF------------KQYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1424 -atGhKVLIFSQft~tLDILed~L~~------------rGikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrAG 1489 (2693)
..++|+||||+++.+++.|.++|.. .|+.+..+||+++.++|.+++++|++ +... |||+|+++
T Consensus 628 ~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT~~~ 704 (797)
T 4a2q_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVA 704 (797)
T ss_dssp HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEECC-
T ss_pred cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEcCch
Confidence 5679999999999999999999976 46677888999999999999999987 6555 89999999
Q ss_pred ccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1490 GVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
++||||+.|++||+||++|||..|+||+|| +|. +++.+|.|++.++++++ +.....|..++.++|..
T Consensus 705 ~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 705 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp ------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 554 78899999999999998 66777888888777753
No 10
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-38 Score=370.89 Aligned_cols=230 Identities=28% Similarity=0.433 Sum_probs=177.6
Q ss_pred hhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhh-ccCCCC----CcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1319 VLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLG-SIGNSK----GRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1319 LLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~-si~~sk----~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
-+||+|++|..+||++.+.+++|+|++.|+.+|+.+..... .+.... ...+++.++.||++|+||+++...
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~---- 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG---- 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS----
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC----
Confidence 47999999999999999999999999999999998865532 222111 124678899999999999987411
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~F 1472 (2693)
..++..++|+..|.++|.++...++|+||||+++.++++|+++|... |+.+.+|+|+++..+|++++++|
T Consensus 89 ---------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 89 ---------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp ---------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred ---------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence 12356789999999999999889999999999999999999999885 99999999999999999999999
Q ss_pred hCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1473 NQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1473 N~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
+++. .+.|||++|++||+||||+.|++||+||+||||..++||+||+||+||+++|+||+|++.+|+||+|++++..|.
T Consensus 160 ~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~ 238 (271)
T 1z5z_A 160 QNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 238 (271)
T ss_dssp HHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCH
T ss_pred cCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Confidence 8763 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccC
Q 000047 1553 GVANQSITAG 1562 (2693)
Q Consensus 1553 ~Li~kVIqaG 1562 (2693)
.+++.+++++
T Consensus 239 ~l~~~~~~~~ 248 (271)
T 1z5z_A 239 SLFKDIISSG 248 (271)
T ss_dssp HHHTTGGGGT
T ss_pred HHHHHHHccC
Confidence 9999999865
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-37 Score=413.24 Aligned_cols=452 Identities=15% Similarity=0.174 Sum_probs=244.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
..+|++||.+++.|++. +.++||+++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999999965 7889999999999999998888766654321 56799999975 78999999999987
Q ss_pred --CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1165 --RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1165 --sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
++++..++|....+... ......++|+|+||+.|........+ ....|++|||||||++.+... +...+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78899999976443211 11123689999999999876654444 456789999999999998765 33333333
Q ss_pred c--------ccccccccccCCCCCHH----------HHHHHhhhc-cCCCCCChhHHHHHhcCcccCCCCCCchhhhhHH
Q 000047 1241 Q--------SSHRLLLTGTPLQNNLE----------ELWALLNFL-LPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSE 1301 (2693)
Q Consensus 1241 k--------a~~RLLLTGTPLQNnLe----------ELwSLLnFL-~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Lse 1301 (2693)
. ..++|+|||||.+++.. +||.+|+.- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 2 25689999999886543 334444321 1112223456666666554332111100000001
Q ss_pred HHHHHHHHHHHHHhhhh----------------------hhhhhHhHHhhcCccceeEeeec-cccHHHHHHHHHHHHHh
Q 000047 1302 EENLLIINRLHQVLRPF----------------------VLRRLKHKVENELPEKIERLVRC-EASAYQKLLMKRVEENL 1358 (2693)
Q Consensus 1302 Ee~lliI~RLhkVLrPF----------------------LLRRtKkDVekeLP~KiE~vV~c-eLSa~Qk~LYk~Lee~l 1358 (2693)
......+..++.+++.+ +....+......+|........+ .+..+...+ ..+...+
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l-~~~~~al 556 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL-RKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH-HHHHHHH
Confidence 11112223333333322 22222222222233221110000 000000000 0000000
Q ss_pred hccCCCCCcchhHHHHHHHHhhCC----ccc------cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCC
Q 000047 1359 GSIGNSKGRSVHNSVMELRNICNH----PYL------SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATD 1426 (2693)
Q Consensus 1359 ~si~~sk~rslln~LmqLRKICnH----PyL------~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atG 1426 (2693)
.... .......+..+...+.. .+. ..........+.. ........++|+..|.++|.+.. ..+
T Consensus 557 ~i~~---~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~--~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (936)
T 4a2w_A 557 IISE---DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIA--LSKDETNENPKLEELVCILDDAYRYNPQ 631 (936)
T ss_dssp HHHH---HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HHTSTTCCCHHHHHHHHHHHHTTTSCTT
T ss_pred hhhc---chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH--hhhccCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 00011111112221110 000 0000000000000 00001124779999999998864 567
Q ss_pred CeEEEEEcchHHHHHHHHHHhhc------------CCeEEEEeCCCCHHHHHHHHHHHhC-CCCCceEEEeeeccccccc
Q 000047 1427 HRVLFFSTMTRLLDVMEDYLTFK------------QYRYLRLDGHTSGGDRGALIDKFNQ-QDSPFFIFLLSIRAGGVGV 1493 (2693)
Q Consensus 1427 hKVLIFSQft~tLDILed~L~~r------------GikylRLDGSTS~eERqeiId~FN~-~dSd~fVfLLSTrAGGeGL 1493 (2693)
+|+||||+++.+++.|.++|... |+.+..+||+++..+|.+++++|+. +..+ |||+|+++++||
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT~~~~eGI 708 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATSVADEGI 708 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS---EEEEECC-----
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEeCchhcCC
Confidence 99999999999999999999876 6667777888999999999999987 6554 799999999999
Q ss_pred CccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhccc
Q 000047 1494 NLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1494 NLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqa 1561 (2693)
||+.|++||+||++||+..|+||+|| +| .+++.||.|++.++++++.+ ....|..++.+++..
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 44 47788999999999999866 667777777777754
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-35 Score=379.84 Aligned_cols=436 Identities=15% Similarity=0.153 Sum_probs=231.1
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecC-chHHHHHHHHHH
Q 000047 1085 CLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPS-SVLPGWESEINF 1161 (2693)
Q Consensus 1085 ~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPt-SLL~QW~eEfeK 1161 (2693)
.+...+|++||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ .|+.||.++|.+
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp TTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34446899999999999875 7899999999999999999888876655432 2579999998 788999999999
Q ss_pred HCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcc-cccCccEEEEccccccccccchHHHHHH
Q 000047 1162 WAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKL-SKIQWHYIIIDEGHRIKNASCKLNADLK 1238 (2693)
Q Consensus 1162 waP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L-~kikWd~VIIDEAHRIKN~sSKlsraLk 1238 (2693)
|++ ++++..+.|....+.... ......+|+|+||+.|.+......+ ...+|++|||||||++++..........
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVE---QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHH---HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHH---HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 987 678888888653221110 1113689999999999886655444 5667999999999999877642222211
Q ss_pred hh---------cccccccccccCCCCC-------HHHHHHHhhhccCCCCCC----hhHHHHHhcCcccCCCCCCc-hhh
Q 000047 1239 HY---------QSSHRLLLTGTPLQNN-------LEELWALLNFLLPNIFNS----SEDFSQWFNKPFESNGDNSP-DEA 1297 (2693)
Q Consensus 1239 ~L---------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P~iF~S----~k~F~e~F~kP~e~~g~~s~-~e~ 1297 (2693)
.+ ...++|+|||||..++ +.+|+.++..++...+.. ......++..|......... ...
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 11 3467899999998543 556666666655544322 33444444444221100000 000
Q ss_pred hhHHHHHHHHHHHHHHHhh-----------------------hhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHH--
Q 000047 1298 LLSEEENLLIINRLHQVLR-----------------------PFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMK-- 1352 (2693)
Q Consensus 1298 ~LseEe~lliI~RLhkVLr-----------------------PFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk-- 1352 (2693)
.+.. ........+..+.+ .+++++.+......+|.+.+.. .....++.
T Consensus 241 ~fs~-~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 313 (696)
T 2ykg_A 241 KFKY-IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYT 313 (696)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHH
Confidence 1110 00001111111111 1111222211111222211100 00000000
Q ss_pred -HHHHHhhccCCCCCcchhHHHHHHHHhhCC---ccccchhhhhhhccCCCCCCCh---h----hhcccHHHHHHHHHHH
Q 000047 1353 -RVEENLGSIGNSKGRSVHNSVMELRNICNH---PYLSQLHAEEVDTLIPKHYLPP---I----VRLCGKLEMLDRLLPK 1421 (2693)
Q Consensus 1353 -~Lee~l~si~~sk~rslln~LmqLRKICnH---PyL~~~~~EEid~li~~~~l~~---L----vr~SgKLelLdeLL~k 1421 (2693)
.+..................+..|...+.. ..... ....+...+. ..... + .....|+..|.++|.+
T Consensus 314 ~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 314 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE-IEQDLTQRFE-EKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHH-TTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 000000000000000000011111111000 00000 0000000000 00000 0 0245799999999987
Q ss_pred hh--cCCCeEEEEEcchHHHHHHHHHHhhcC----CeEEEEeC--------CCCHHHHHHHHHHHhC-CCCCceEEEeee
Q 000047 1422 LK--ATDHRVLFFSTMTRLLDVMEDYLTFKQ----YRYLRLDG--------HTSGGDRGALIDKFNQ-QDSPFFIFLLSI 1486 (2693)
Q Consensus 1422 Lk--atGhKVLIFSQft~tLDILed~L~~rG----ikylRLDG--------STS~eERqeiId~FN~-~dSd~fVfLLST 1486 (2693)
.. ..++++||||+++..++.|.++|...| +++..++| +++.++|.+++++|+. +... +||+|
T Consensus 392 ~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vLVaT 468 (696)
T 2ykg_A 392 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN---ILIAT 468 (696)
T ss_dssp HHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS---CSEEE
T ss_pred HhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc---EEEEe
Confidence 63 357899999999999999999999988 89999955 9999999999999987 6655 68999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQ 1543 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEk 1543 (2693)
+++++|||++++++||+||++||+..|+||+|| +|. +...+|.|++.+++++.
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999999999999 885 56788889988877664
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=368.60 Aligned_cols=447 Identities=15% Similarity=0.147 Sum_probs=251.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---CCCCEEEEecCc-hHHHH-HHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---DRGPFLVVVPSS-VLPGW-ESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---~~gP~LIVVPtS-LL~QW-~eEfeKwa 1163 (2693)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||+|+. |+.|| .++|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 5899999999999886 778999999999999999988887765432 235689999985 77999 99999999
Q ss_pred CC-CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhcc------CCCcccccCccEEEEccccccccccc--h-H
Q 000047 1164 PR-IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKH------DRPKLSKIQWHYIIIDEGHRIKNASC--K-L 1233 (2693)
Q Consensus 1164 Ps-LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~------Dr~~L~kikWd~VIIDEAHRIKN~sS--K-l 1233 (2693)
+. +.+..+.|........ .......+|+|+||+.|.... ....+....|++|||||||++.+... . .
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 86 8899998875432111 111257899999999998765 33346667899999999999855321 1 1
Q ss_pred HHHHHh-h-------------cccccccccccCCCCC-------HHHHHHHhhhccC-CCCC---ChhHHHHHhcCcccC
Q 000047 1234 NADLKH-Y-------------QSSHRLLLTGTPLQNN-------LEELWALLNFLLP-NIFN---SSEDFSQWFNKPFES 1288 (2693)
Q Consensus 1234 sraLk~-L-------------ka~~RLLLTGTPLQNn-------LeELwSLLnFL~P-~iF~---S~k~F~e~F~kP~e~ 1288 (2693)
...+.. + ...++|+|||||..++ ..++..++..+++ .+.. ....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 122211 1 3356899999999863 3445555566666 2222 224555555544321
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHhh-------------hhhhhhhHhHHhhcCcc----------cee---Eeeecc
Q 000047 1289 NGDNSPDEALLSEEENLLIINRLHQVLR-------------PFVLRRLKHKVENELPE----------KIE---RLVRCE 1342 (2693)
Q Consensus 1289 ~g~~s~~e~~LseEe~lliI~RLhkVLr-------------PFLLRRtKkDVekeLP~----------KiE---~vV~ce 1342 (2693)
......................++..+. +++....+......... ... ....+.
T Consensus 239 ~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (699)
T 4gl2_A 239 FAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIR 318 (699)
T ss_dssp EEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000000000011111111110 00000000000000000 000 000000
Q ss_pred c---cHHHHHHHHHHHHHhhccC---CCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHH
Q 000047 1343 A---SAYQKLLMKRVEENLGSIG---NSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLD 1416 (2693)
Q Consensus 1343 L---Sa~Qk~LYk~Lee~l~si~---~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLd 1416 (2693)
+ ..+-..+|........... ......+......+...... ....+...... ....+.|+..|.
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~l~~~~~~-----~~~~~~k~~~L~ 387 (699)
T 4gl2_A 319 MIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFE------NNKMLKRLAEN-----PEYENEKLTKLR 387 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHH------HHHHHHHHHTC-----CC----CSSCSH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHH------HHHHHHHHhhc-----CCCCCHHHHHHH
Confidence 0 0011112222211110000 00000011111111110000 00000000000 001245666777
Q ss_pred HHHHHhhc--C-CCeEEEEEcchHHHHHHHHHHhhc------CCeEEEEeCC--------CCHHHHHHHHHHHhCCCCCc
Q 000047 1417 RLLPKLKA--T-DHRVLFFSTMTRLLDVMEDYLTFK------QYRYLRLDGH--------TSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1417 eLL~kLka--t-GhKVLIFSQft~tLDILed~L~~r------GikylRLDGS--------TS~eERqeiId~FN~~dSd~ 1479 (2693)
++|.+... . +.++||||+++.+++.|.++|... |+++..|||+ ++.++|.+++++|++++.+
T Consensus 388 ~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~- 466 (699)
T 4gl2_A 388 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN- 466 (699)
T ss_dssp HHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C-
T ss_pred HHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc-
Confidence 77766433 2 789999999999999999999987 9999999999 9999999999999887665
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSI 1559 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVI 1559 (2693)
|||+|+++++|||++++++||+||++||+..|+||+||++|-| ..++.+...++.+...+.....+..++...+
T Consensus 467 --VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 467 --LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp --CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred --EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999987655 3444455666655554444445555555555
Q ss_pred c
Q 000047 1560 T 1560 (2693)
Q Consensus 1560 q 1560 (2693)
.
T Consensus 541 ~ 541 (699)
T 4gl2_A 541 H 541 (699)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.9e-33 Score=346.61 Aligned_cols=346 Identities=12% Similarity=0.140 Sum_probs=247.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHH--CCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFW--APR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKw--aPs 1165 (2693)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... .+++|||||. .|+.||.++|.+| ++.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4899999999999886 46899999999999999988887776543 3479999998 5778999999999 566
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+..+.|......+ .....+|+|+||+.+.+.. .....+|++|||||||++.+. .....+..+ ...+
T Consensus 186 ~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~---~~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~ 254 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (510)
T ss_dssp GGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSC---GGGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCE
T ss_pred cceEEEecCCccccc------cccCCcEEEEeHHHHhhch---hhhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcE
Confidence 777777765432211 2467899999999987632 233347899999999999873 234444566 5678
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
+|+||||| .+...++|.+..++.+.++... ... ..
T Consensus 255 ~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~---------------~~~----~~------------------------- 289 (510)
T 2oca_A 255 KFGLSGSL-RDGKANIMQYVGMFGEIFKPVT---------------TSK----LM------------------------- 289 (510)
T ss_dssp EEEEESCG-GGCSSCHHHHHHHHCSEECCCC---------------CC--------------------------------
T ss_pred EEEEEeCC-CCCcccHHHhHHhhCCeEEeeC---------------HHH----Hh-------------------------
Confidence 89999999 5555567777666655432110 000 00
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
-...+++.....+.+.+........ . ...+.. .+..+
T Consensus 290 --~~~~l~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~---~~~~~------------------------- 326 (510)
T 2oca_A 290 --EDGQVTELKINSIFLRYPDEFTTKL-------K------GKTYQE---EIKII------------------------- 326 (510)
T ss_dssp --------CCEEEEEEEECCHHHHHHH-------T------TCCHHH---HHHHH-------------------------
T ss_pred --hCCcCCCceEEEEeecCChHHhccc-------c------ccchHH---HHHHH-------------------------
Confidence 0002333334444444443322100 0 000000 01111
Q ss_pred hhhcccHHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1405 IVRLCGKLEMLDRLLPKLKAT-DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~kLkat-GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.....|...+.+++.++... +.++|||+. +..++.|.++|...+.++..+||.++.++|+++++.|+++... +|
T Consensus 327 -~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~---vL 401 (510)
T 2oca_A 327 -TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI---II 401 (510)
T ss_dssp -HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC---EE
T ss_pred -hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC---EE
Confidence 11223566677777766554 456666666 8888889999999989999999999999999999999977655 78
Q ss_pred eee-cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc-cEEEEEEEeCCCHHHHH
Q 000047 1484 LSI-RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQTVEEQV 1544 (2693)
Q Consensus 1484 LST-rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK-eV~VyRLIT~gSIEEkI 1544 (2693)
|+| .++++|||++.+++||+||++|++..+.|++||++|.|+.+ .|.||.++...++.+++
T Consensus 402 v~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 402 VASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp EEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred EEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 888 99999999999999999999999999999999999999987 69999999977655443
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.7e-32 Score=325.32 Aligned_cols=332 Identities=14% Similarity=0.186 Sum_probs=234.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998875 67899999999999999887776655443445579999998 66788999999886 47
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch---HHHHHHhh-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK---LNADLKHY-Q 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK---lsraLk~L-k 1241 (2693)
+++..+.|........ ..+.....+|+|+||+.+........+...+|++|||||||++.+.... +...+..+ .
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888865433221 2233356799999999998655444555678999999999999764221 11222222 2
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
...+++|||||-.. ..++. ..++..|.
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~----------------------------------- 210 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPM----------------------------------- 210 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCE-----------------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCe-----------------------------------
Confidence 45679999998422 11110 00111000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
...+... ....... ..+.+.
T Consensus 211 --------------~~~~~~~-------------------~~~~~~~-----------~~~~~~---------------- 230 (391)
T 1xti_A 211 --------------EIFVDDE-------------------TKLTLHG-----------LQQYYV---------------- 230 (391)
T ss_dssp --------------EEECCCC-------------------CCCCCTT-----------CEEEEE----------------
T ss_pred --------------EEEecCc-------------------cccCccc-----------ceEEEE----------------
Confidence 0000000 0000000 000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
......|...|.+++... .++++||||+....++.+.++|...|+.+..+||+++.++|.++++.|+++...
T Consensus 231 ---~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--- 302 (391)
T 1xti_A 231 ---KLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--- 302 (391)
T ss_dssp ---ECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---
T ss_pred ---EcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---
Confidence 011234777888888764 578999999999999999999999999999999999999999999999887665
Q ss_pred EEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+|++|+++++|||++.+++||+||++|++..|+||+||++|.|+...+.+| ++. .-+++++...+.+
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~--~~~-~~~~~~~~~~~~~ 369 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF--VSD-ENDAKILNDVQDR 369 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE--ECS-HHHHHHHHHHHHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE--Ecc-cchHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999976655443 433 2244555555444
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=2.7e-32 Score=348.34 Aligned_cols=355 Identities=15% Similarity=0.177 Sum_probs=216.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcC-CCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEec-CchHHHHH-HH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQ-LNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVP-SSVLPGWE-SE 1158 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVP-tSLL~QW~-eE 1158 (2693)
+..|++||.++++|++..+.++ .++||+++||+|||++++.++..++..+ ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4689999999999998877665 5589999999999999999998887654 13467999999 56779999 88
Q ss_pred HHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccC----CCcccccCccEEEEcccccccccc-chH
Q 000047 1159 INFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHD----RPKLSKIQWHYIIIDEGHRIKNAS-CKL 1233 (2693)
Q Consensus 1159 feKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~D----r~~L~kikWd~VIIDEAHRIKN~s-SKl 1233 (2693)
|..|...+ ..+.+ .......+|+|+||+.|..... ...+....|++|||||||++.+.. ..+
T Consensus 256 ~~~~~~~~--~~~~~-----------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDAR--HKIEG-----------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSE--EECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhh--hhhhc-----------cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 88776532 22222 1123578999999999976432 223445679999999999998753 344
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
...+..+...++|+|||||..+...+++.++. .++.... +..
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~--------------------~~~ 364 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS--------------------LRQ 364 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC--------------------HHH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC--------------------HHH
Confidence 45556677788999999999887776665442 1111000 000
Q ss_pred HhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEV 1393 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEi 1393 (2693)
.+. ...+.+.....+..................... . +.. ..|
T Consensus 365 ~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~---~~~--------- 407 (590)
T 3h1t_A 365 GID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR-----------E---IPD---GEY--------- 407 (590)
T ss_dssp HHH-----------HTSSCCEEEEEEEETTCC------------------------------------------------
T ss_pred Hhh-----------CCccCCcEEEEeeeeeecccccccccccccccc-----------c---ccc---ccC---------
Confidence 000 001111112222221110000000000000000 0 000 000
Q ss_pred hccCCCCCCChhhhcccHHHHHHHHHHHh---hcCCCeEEEEEcchHHHHHHHHHHhhcCCe--------EEEEeCCCCH
Q 000047 1394 DTLIPKHYLPPIVRLCGKLEMLDRLLPKL---KATDHRVLFFSTMTRLLDVMEDYLTFKQYR--------YLRLDGHTSG 1462 (2693)
Q Consensus 1394 d~li~~~~l~~Lvr~SgKLelLdeLL~kL---katGhKVLIFSQft~tLDILed~L~~rGik--------ylRLDGSTS~ 1462 (2693)
....+...+....+...+.+.|.++ ...+.|+||||+.+..++.|.++|...+.. +.+++|.++
T Consensus 408 ----~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 408 ----QTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred ----CHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 0000001111122333333333222 144689999999999999999999776543 778999876
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCC---cccEEEEEEE
Q 000047 1463 GDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQ---KRDVLVLRFE 1535 (2693)
Q Consensus 1463 eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQ---kKeV~VyRLI 1535 (2693)
++|++++++|++++.++.++|++|+++++|||++.+++||+|+++|++..|+|++||++|+|+ +..+.||.++
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 479999999999887788899999999999999999999999999999999999999999995 4568898887
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1e-30 Score=314.92 Aligned_cols=327 Identities=17% Similarity=0.227 Sum_probs=231.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|+.++||+|||++++..+...+........+|||||. .++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 3699999999999886 67899999999999999887776655443344569999998 556889999999986 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh----h-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH----Y- 1240 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~----L- 1240 (2693)
+.+..+.|......... ......+|+|+|++.+........+...+|++|||||||++.+.. ....+.. +
T Consensus 118 ~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~i~~~~~ 192 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILSFLP 192 (400)
T ss_dssp CCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH--HHHHHHHHHTTSC
T ss_pred ceEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHHhCC
Confidence 67777877765543322 124678999999999876554444556678999999999987643 2222322 2
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
.....++||||+-. ++..+ +..++..|+
T Consensus 193 ~~~~~i~lSAT~~~----~~~~~--------------~~~~~~~~~---------------------------------- 220 (400)
T 1s2m_A 193 PTHQSLLFSATFPL----TVKEF--------------MVKHLHKPY---------------------------------- 220 (400)
T ss_dssp SSCEEEEEESCCCH----HHHHH--------------HHHHCSSCE----------------------------------
T ss_pred cCceEEEEEecCCH----HHHHH--------------HHHHcCCCe----------------------------------
Confidence 24567999999621 10000 000110000
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
...+...+. . ..+ .+ +.
T Consensus 221 ---------------~~~~~~~~~------------------~---~~~-----------~~-~~--------------- 237 (400)
T 1s2m_A 221 ---------------EINLMEELT------------------L---KGI-----------TQ-YY--------------- 237 (400)
T ss_dssp ---------------EESCCSSCB------------------C---TTE-----------EE-EE---------------
T ss_pred ---------------EEEeccccc------------------c---CCc-----------ee-EE---------------
Confidence 000000000 0 000 00 00
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
..+....|+..|..++... .+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|+++...
T Consensus 238 ---~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-- 310 (400)
T 1s2m_A 238 ---AFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR-- 310 (400)
T ss_dssp ---EECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS--
T ss_pred ---EEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc--
Confidence 0011234677777777653 467999999999999999999999999999999999999999999999887655
Q ss_pred EEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1481 IFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1481 VfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||++.+++||+||++|++..|+||+||++|.|+.. .+|.|+.... ...+...+.+
T Consensus 311 -vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~--~~~~~~i~~~ 376 (400)
T 1s2m_A 311 -TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND--RFNLYKIEQE 376 (400)
T ss_dssp -EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG--HHHHHHHHHH
T ss_pred -EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch--HHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999754 4555666653 3334444433
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=5.4e-31 Score=318.78 Aligned_cols=321 Identities=15% Similarity=0.216 Sum_probs=228.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+........+|||||+. |..||.++|.+|+. .
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 3699999999999875 678999999999999998877766554334456799999985 66889999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L-ka 1242 (2693)
+.+..+.|.......... .....+|+|+|++.+........+....|++|||||||++.+... .+...+..+ ..
T Consensus 134 ~~~~~~~g~~~~~~~~~~---~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~ 210 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 210 (410)
T ss_dssp CCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTT
T ss_pred eEEEEEECCCCHHHHHHH---hhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccC
Confidence 566777776544432211 124679999999998776555556667899999999999977542 222333333 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++||||+-. ++..++..+ +..|+.....
T Consensus 211 ~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~~------------------------------- 241 (410)
T 2j0s_A 211 TQVVLISATLPH----EILEMTNKF--------------MTDPIRILVK------------------------------- 241 (410)
T ss_dssp CEEEEEESCCCH----HHHTTGGGT--------------CSSCEEECCC-------------------------------
T ss_pred ceEEEEEcCCCH----HHHHHHHHH--------------cCCCEEEEec-------------------------------
Confidence 567999999821 111111100 0000000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
.....++..... +.
T Consensus 242 ---~~~~~~~~~~~~----------------------------------------------~~----------------- 255 (410)
T 2j0s_A 242 ---RDELTLEGIKQF----------------------------------------------FV----------------- 255 (410)
T ss_dssp ---GGGCSCTTEEEE----------------------------------------------EE-----------------
T ss_pred ---CccccCCCceEE----------------------------------------------EE-----------------
Confidence 000000000000 00
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.+.....|+..|.+++..+. ..++||||+....++.|.++|...|+.+..+||+++.++|.++++.|+++... +
T Consensus 256 -~~~~~~~k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---v 329 (410)
T 2j0s_A 256 -AVEREEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---V 329 (410)
T ss_dssp -EESSTTHHHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---E
T ss_pred -EeCcHHhHHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---E
Confidence 00011237778888887653 56999999999999999999999999999999999999999999999987665 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
||+|+++++|||++.+++||+||++|++..|+||+||++|.|++. .+|.|++...
T Consensus 330 lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 999999999999999999999999999999999999999999764 4555566543
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.4e-31 Score=313.96 Aligned_cols=314 Identities=17% Similarity=0.252 Sum_probs=225.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. .+.++|++++||+|||++++..+..++... ....+|||||. .++.||.+++.+|++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 3799999999998875 336889999999999999887776665332 34468999998 556899999999975 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~L-ka 1242 (2693)
+.+..+.|.......... ....+|+|+||+.+........+...+|++|||||||++.+... .+...+..+ ..
T Consensus 103 ~~v~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 178 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKA----LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKD 178 (367)
T ss_dssp CCEEEECTTSCHHHHHHH----HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSS
T ss_pred ceEEEEECCcchHHHHhh----cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCC
Confidence 567777776544332211 13689999999999876555455567889999999999977542 223333333 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++|||||... ++.++ ..++..+
T Consensus 179 ~~~i~~SAT~~~~----~~~~~--------------~~~~~~~------------------------------------- 203 (367)
T 1hv8_A 179 KRILLFSATMPRE----ILNLA--------------KKYMGDY------------------------------------- 203 (367)
T ss_dssp CEEEEECSSCCHH----HHHHH--------------HHHCCSE-------------------------------------
T ss_pred ceEEEEeeccCHH----HHHHH--------------HHHcCCC-------------------------------------
Confidence 5669999999321 11100 0000000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
..+..... .. ..+.++
T Consensus 204 --------------~~~~~~~~-------------------~~--------------~~~~~~----------------- 219 (367)
T 1hv8_A 204 --------------SFIKAKIN-------------------AN--------------IEQSYV----------------- 219 (367)
T ss_dssp --------------EEEECCSS-------------------SS--------------SEEEEE-----------------
T ss_pred --------------eEEEecCC-------------------CC--------------ceEEEE-----------------
Confidence 00000000 00 000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|+..|.+++. ..+.++||||+....++.+.++|...|+.+..++|+++.++|.++++.|+++... +
T Consensus 220 --~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 291 (367)
T 1hv8_A 220 --EVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---I 291 (367)
T ss_dssp --ECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---E
T ss_pred --EeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---E
Confidence 0011235666666654 5678999999999999999999999999999999999999999999999887655 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
|++|+++++|+|++.+++||+||++|++..+.||+||++|.|+...+.+ |+....
T Consensus 292 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~ 346 (367)
T 1hv8_A 292 LIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRRE 346 (367)
T ss_dssp EEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTS
T ss_pred EEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHH
Confidence 9999999999999999999999999999999999999999998765544 455543
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=322.47 Aligned_cols=321 Identities=17% Similarity=0.215 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++.+++. +.++|++++||+|||++++..+...+........+|||||.. +..||.+++.+|+. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 4699999999988875 778999999999999998877776654444456699999985 66889999999863 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh-cc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY-QS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L-ka 1242 (2693)
+.+..+.|........ ........+|+|+|++.|........+....|++|||||||++.+.. ..+...+..+ ..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCEEECCCCTTHHHHH--HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred ceEEEEECCcchHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 5666666665444332 22334678999999999887655555566678999999999986543 2333444444 34
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.++|||||- .++..++..+ +..++
T Consensus 215 ~~~i~~SAT~~----~~~~~~~~~~--------------~~~~~------------------------------------ 240 (414)
T 3eiq_A 215 TQVVLLSATMP----SDVLEVTKKF--------------MRDPI------------------------------------ 240 (414)
T ss_dssp CEEEEECSCCC----HHHHHHHTTT--------------CSSCE------------------------------------
T ss_pred CeEEEEEEecC----HHHHHHHHHH--------------cCCCE------------------------------------
Confidence 55689999982 1111111100 00000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+... ..... ...+.++.
T Consensus 241 -------------~~~~~~~--------------------~~~~~-----------~~~~~~~~---------------- 260 (414)
T 3eiq_A 241 -------------RILVKKE--------------------ELTLE-----------GIRQFYIN---------------- 260 (414)
T ss_dssp -------------EECCCCC--------------------CCCTT-----------SCCEEEEE----------------
T ss_pred -------------EEEecCC--------------------ccCCC-----------CceEEEEE----------------
Confidence 0000000 00000 00000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|+..|.+++... .+.++||||+....++.+.++|...++.+..+||.++.++|.++++.|+++... +
T Consensus 261 --~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---v 333 (414)
T 3eiq_A 261 --VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---V 333 (414)
T ss_dssp --CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------C
T ss_pred --eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---E
Confidence 001123778888888754 467999999999999999999999999999999999999999999999876654 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
||+|+++++|||++.+++||+||++||+..|+||+||++|.|+... +|.|++..
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 9999999999999999999999999999999999999999997654 45556654
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.6e-30 Score=302.32 Aligned_cols=314 Identities=16% Similarity=0.206 Sum_probs=216.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.++.. +.++|+.++||+|||++++..+... ...+|||||. .++.||.+++.+|+. +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998875 6789999999999999887666542 3458999998 566899999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQSS 1243 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka~ 1243 (2693)
+.+..+.|......... .....+|+|+||+.+.+......+...+|++|||||||++.+... .+...+..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~ 160 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQIN----RVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR 160 (337)
T ss_dssp CCEEEECTTSCHHHHHH----HHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTC
T ss_pred CcEEEEECCcchHHHHh----hcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcc
Confidence 67777777654432221 113589999999999875544455567799999999999976442 233333444433
Q ss_pred -ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1244 -HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1244 -~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
..+++||||-. ++..++ ..++..+... .
T Consensus 161 ~~~~~~SAT~~~----~~~~~~--------------~~~~~~~~~~--------------------------------~- 189 (337)
T 2z0m_A 161 KITGLFSATIPE----EIRKVV--------------KDFITNYEEI--------------------------------E- 189 (337)
T ss_dssp SEEEEEESCCCH----HHHHHH--------------HHHSCSCEEE--------------------------------E-
T ss_pred cEEEEEeCcCCH----HHHHHH--------------HHhcCCceee--------------------------------e-
Confidence 34578999921 111111 1111100000 0
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
....++......+.+.
T Consensus 190 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 205 (337)
T 2z0m_A 190 ----ACIGLANVEHKFVHVK------------------------------------------------------------ 205 (337)
T ss_dssp ----CSGGGGGEEEEEEECS------------------------------------------------------------
T ss_pred ----cccccCCceEEEEEeC------------------------------------------------------------
Confidence 0000000000000000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.+...+...+. ...+.++||||+....++.+.++|. .+..++|.++..+|.++++.|+++... +
T Consensus 206 -------~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 269 (337)
T 2z0m_A 206 -------DDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---M 269 (337)
T ss_dssp -------SSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---E
T ss_pred -------hHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---E
Confidence 00000111222 2457899999999999999999887 678999999999999999999987665 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHH
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASA 1548 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlera 1548 (2693)
|++|+++++|||++.+++||+||++|++..+.|++||++|.|++..+.+|.. .+..+.+.|.+..
T Consensus 270 lv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 270 LITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888777765 4444555554443
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=4.4e-30 Score=306.15 Aligned_cols=314 Identities=15% Similarity=0.192 Sum_probs=220.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. .++.++|++++||+|||++++..+...+........+|||||.. ++.||.+++.+++. .
T Consensus 26 ~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998864 12378999999999999998877766554444556799999986 66889999999864 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHH-Hhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADL-KHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraL-k~Lk- 1241 (2693)
+.+..+.+..... ......+|+|+|++.+........+...+|++|||||||++.+... .....+ ..+.
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CCEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eeEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 5566665543221 1234789999999999876555555667899999999999876322 122222 2222
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
..+.++|||||-. .+..++ .++.
T Consensus 177 ~~~~i~~SAT~~~----~~~~~~---------------~~~~-------------------------------------- 199 (395)
T 3pey_A 177 DTQLVLFSATFAD----AVRQYA---------------KKIV-------------------------------------- 199 (395)
T ss_dssp TCEEEEEESCCCH----HHHHHH---------------HHHS--------------------------------------
T ss_pred CcEEEEEEecCCH----HHHHHH---------------HHhC--------------------------------------
Confidence 3466899999821 111110 0000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
+...... .... ..... ...+.+.
T Consensus 200 ----------~~~~~~~--~~~~---------------~~~~~--------------~~~~~~~---------------- 222 (395)
T 3pey_A 200 ----------PNANTLE--LQTN---------------EVNVD--------------AIKQLYM---------------- 222 (395)
T ss_dssp ----------CSCEEEC--CCGG---------------GCSCT--------------TEEEEEE----------------
T ss_pred ----------CCCeEEE--cccc---------------ccccc--------------cccEEEE----------------
Confidence 0000000 0000 00000 0000000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceE
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFI 1481 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fV 1481 (2693)
.......|+..|..++... .+.++||||+....++.+.++|...|+.+..+||.++.++|.++++.|+++...
T Consensus 223 --~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--- 295 (395)
T 3pey_A 223 --DCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK--- 295 (395)
T ss_dssp --ECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---
T ss_pred --EcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---
Confidence 0001123667777776643 468999999999999999999999999999999999999999999999987665
Q ss_pred EEeeecccccccCccccCEEEEecCCC------CccchhhhhhhhcccCCcccEEEE
Q 000047 1482 FLLSIRAGGVGVNLQAADTVIIFDTDW------NPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1482 fLLSTrAGGeGLNLQaADtVIiyDppW------NP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|+++++|||++.+++||+||++| ++..|+||+||++|.|++..+.+|
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 799999999999999999999999999 999999999999999976554443
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=2.7e-31 Score=317.57 Aligned_cols=319 Identities=15% Similarity=0.199 Sum_probs=118.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999999886 67899999999999999776666554444445579999998 566889999999875 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
+.+..+.|.......... ....+|+|+|++.+........+...+|++|||||||++.+.. ..+...+..+. .
T Consensus 118 ~~~~~~~g~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEG----LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193 (394)
T ss_dssp CCEEEECSSCCHHHHHHH----HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred eeEEEEeCCCchHHHHhh----cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCC
Confidence 677788876544322211 1267999999999977655555666789999999999985543 23334444443 4
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.++++|||||-. ++..++ ..++..|.
T Consensus 194 ~~~i~~SAT~~~----~~~~~~--------------~~~~~~~~------------------------------------ 219 (394)
T 1fuu_A 194 TQVVLLSATMPN----DVLEVT--------------TKFMRNPV------------------------------------ 219 (394)
T ss_dssp CEEEEECSSCCH----HHHHHH--------------HHHCCSCE------------------------------------
T ss_pred ceEEEEEEecCH----HHHHHH--------------HHhcCCCe------------------------------------
Confidence 567999999831 111100 01111100
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
...+ ..... ....+ .+ -+..
T Consensus 220 -------------~~~~--~~~~~---~~~~~----------------------~~----~~~~---------------- 239 (394)
T 1fuu_A 220 -------------RILV--KKDEL---TLEGI----------------------KQ----FYVN---------------- 239 (394)
T ss_dssp -------------EEEE--CC-----------------------------------------------------------
T ss_pred -------------EEEe--cCccc---cCCCc----------------------eE----EEEE----------------
Confidence 0000 00000 00000 00 0000
Q ss_pred ChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1403 PPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1403 ~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
......|...|.+++... .++++||||+....++.+.++|...++.+..++|+++.++|.++++.|+++... +
T Consensus 240 --~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---v 312 (394)
T 1fuu_A 240 --VEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---I 312 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---E
Confidence 000012455555665543 357999999999999999999999999999999999999999999999876544 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
|++|+++++|||++.+++||+||++|++..+.|++||++|.|++..+.+ |++..
T Consensus 313 lv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 313 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 9999999999999999999999999999999999999999997665444 44443
No 24
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=7.3e-31 Score=314.28 Aligned_cols=210 Identities=19% Similarity=0.214 Sum_probs=159.2
Q ss_pred CccceeEeeeccccHHHHHHHHHHHHH----hh-ccCCC--CC----cchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1331 LPEKIERLVRCEASAYQKLLMKRVEEN----LG-SIGNS--KG----RSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1331 LP~KiE~vV~ceLSa~Qk~LYk~Lee~----l~-si~~s--k~----rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
-|.+.|+++.|.|+.+|+.+|+.+... +. ..... .. ..+.+.+|+||++||||||+...... ......
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p-~~~~~~ 98 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMP-KSLITR 98 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCC-SCSCST
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCC-cccccc
Confidence 389999999999999999999988532 11 11111 11 25689999999999999998311100 001111
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.....+++.||||.+|+++|..+++.+|||||||||++++|+|++||..+|+.|+|+||++... +++ ..+..+
T Consensus 99 ~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~~~~~ 171 (328)
T 3hgt_A 99 DVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------ANDFSC 171 (328)
T ss_dssp THHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSE
T ss_pred chhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cccCCc
Confidence 1134578899999999999999999999999999999999999999999999999999996543 222 124568
Q ss_pred eEEEeeecccccccC-----ccccCEEEEecCCCCccch-hhhhhhhccc--CCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1480 FIFLLSIRAGGVGVN-----LQAADTVIIFDTDWNPQVD-LQAQARAHRI--GQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLN-----LQaADtVIiyDppWNP~~d-iQAIGRAHRI--GQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
++||+ |.+||.|+| |..||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++.+|||+.++..-.
T Consensus 172 ~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 172 TVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp EEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHH
T ss_pred eEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 88887 678888886 8999999999999999998 9999999999 78999999999999999999988643
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=300.79 Aligned_cols=320 Identities=18% Similarity=0.256 Sum_probs=221.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC------------------CCCEEEEecC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND------------------RGPFLVVVPS- 1149 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~------------------~gP~LIVVPt- 1149 (2693)
..|+|+|.+++..+.. +.+.|+..+||+|||++++..+...+..... ...+|||||+
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 4799999999987764 7889999999999999877655443322211 1348999998
Q ss_pred chHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc
Q 000047 1150 SVLPGWESEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK 1227 (2693)
Q Consensus 1150 SLL~QW~eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK 1227 (2693)
.|+.||.+++.+|+. .+++..++|......... ....+.+|+|+|++.|........+....+++|||||||++.
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 566889999998864 567777777654433221 123568999999999987655555566678999999999986
Q ss_pred ccc--chHHHHHHh--hc---ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhH
Q 000047 1228 NAS--CKLNADLKH--YQ---SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLS 1300 (2693)
Q Consensus 1228 N~s--SKlsraLk~--Lk---a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~Ls 1300 (2693)
... ..+...+.. +. ....++||||+-. ++..++. .++..++
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~-------------- 236 (417)
T 2i4i_A 189 DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYI-------------- 236 (417)
T ss_dssp HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCE--------------
T ss_pred ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCE--------------
Confidence 543 122222221 11 2456899999821 1111110 0110000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhh
Q 000047 1301 EEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNIC 1380 (2693)
Q Consensus 1301 eEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKIC 1380 (2693)
. +.+.. . ... .. ..
T Consensus 237 -----------------------------------~--~~~~~--~---------------~~~-~~-----------~i 250 (417)
T 2i4i_A 237 -----------------------------------F--LAVGR--V---------------GST-SE-----------NI 250 (417)
T ss_dssp -----------------------------------E--EEEC---------------------C-CS-----------SE
T ss_pred -----------------------------------E--EEeCC--C---------------CCC-cc-----------Cc
Confidence 0 00000 0 000 00 00
Q ss_pred CCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCC
Q 000047 1381 NHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHT 1460 (2693)
Q Consensus 1381 nHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGST 1460 (2693)
.+.+. .+....|...|.+++... ..+.++||||+....++.+.++|...|+.+..+||.+
T Consensus 251 ~~~~~-------------------~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~ 310 (417)
T 2i4i_A 251 TQKVV-------------------WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDR 310 (417)
T ss_dssp EEEEE-------------------ECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred eEEEE-------------------EeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCC
Confidence 00000 011234777888888764 3578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1461 SGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1461 S~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+.++|.++++.|+++... +||+|+++++|||++.+++||+||++|++..|+||+||++|.|+.. .+|.|+...
T Consensus 311 ~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 311 SQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp CHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 999999999999887765 8999999999999999999999999999999999999999999764 445555543
No 26
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=9.7e-29 Score=305.70 Aligned_cols=316 Identities=17% Similarity=0.220 Sum_probs=223.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-----CCCCEEEEecCc-hHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-----DRGPFLVVVPSS-VLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-----~~gP~LIVVPtS-LL~QW~eEfeKw 1162 (2693)
..++|+|.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |..||.+++.+|
T Consensus 77 ~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 4699999999998864 789999999999999988766654443322 134589999985 568899999999
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. .+++.+++|........ .....+.+|+|+|++.|........+...++++|||||||+|.+.. ..+.+.+.
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~ 229 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMT 229 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred hccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHH
Confidence 75 35666666654433221 1223578999999999987665555666788999999999997754 23334444
Q ss_pred hh---cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHh
Q 000047 1239 HY---QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVL 1315 (2693)
Q Consensus 1239 ~L---ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVL 1315 (2693)
.+ .....+++|||+- .++..++..
T Consensus 230 ~~~~~~~~q~l~~SAT~~----~~~~~~~~~------------------------------------------------- 256 (434)
T 2db3_A 230 HVTMRPEHQTLMFSATFP----EEIQRMAGE------------------------------------------------- 256 (434)
T ss_dssp CTTSCSSCEEEEEESCCC----HHHHHHHHT-------------------------------------------------
T ss_pred hcCCCCCceEEEEeccCC----HHHHHHHHH-------------------------------------------------
Confidence 33 2355689999972 111111100
Q ss_pred hhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhc
Q 000047 1316 RPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDT 1395 (2693)
Q Consensus 1316 rPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~ 1395 (2693)
| +..... +.+.. ..... ..+ .+-+.
T Consensus 257 --~------------l~~~~~--i~~~~-----------------~~~~~-~~i-----------~~~~~---------- 281 (434)
T 2db3_A 257 --F------------LKNYVF--VAIGI-----------------VGGAC-SDV-----------KQTIY---------- 281 (434)
T ss_dssp --T------------CSSCEE--EEESS-----------------TTCCC-TTE-----------EEEEE----------
T ss_pred --h------------ccCCEE--EEecc-----------------ccccc-ccc-----------ceEEE----------
Confidence 0 000000 00000 00000 000 00000
Q ss_pred cCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1396 LIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1396 li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
.+....|...|.++|... +.++||||+....++.|.++|...|+.+..+||+++..+|.+++++|+++
T Consensus 282 ---------~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g 349 (434)
T 2db3_A 282 ---------EVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG 349 (434)
T ss_dssp ---------ECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS
T ss_pred ---------EeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 011234677777777653 34599999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEe
Q 000047 1476 DSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFET 1536 (2693)
Q Consensus 1476 dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT 1536 (2693)
... +||+|+++++|||++.+++||+||++|++..|+||+||++|.|++..+ +.|++
T Consensus 350 ~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~ 405 (434)
T 2db3_A 350 SMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFD 405 (434)
T ss_dssp SCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred CCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEe
Confidence 765 899999999999999999999999999999999999999999976544 44455
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=2.4e-28 Score=293.85 Aligned_cols=331 Identities=14% Similarity=0.176 Sum_probs=224.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwa---P 1164 (2693)
..+++||.+++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. ++.||.+.+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 4799999999988775 13478999999999999998776665554444444699999986 5577888887765 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHHHHH-Hhh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLNADL-KHY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKlsraL-k~L 1240 (2693)
.+.+....+..... .......+|+|+|++.+...... ..+...+|++|||||||++.... ......+ ..+
T Consensus 124 ~~~~~~~~~~~~~~------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 124 ELKLAYAVRGNKLE------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp TCCEEEECTTCCCC------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred cceEEEeecCcchh------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 66777666653321 11234679999999999775432 34445678999999999986422 2222222 333
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....++|||||-. +++.++..+ +
T Consensus 198 ~~~~~~i~~SAT~~~----~~~~~~~~~--------------~------------------------------------- 222 (412)
T 3fht_A 198 PRNCQMLLFSATFED----SVWKFAQKV--------------V------------------------------------- 222 (412)
T ss_dssp CTTCEEEEEESCCCH----HHHHHHHHH--------------S-------------------------------------
T ss_pred CCCceEEEEEeecCH----HHHHHHHHh--------------c-------------------------------------
Confidence 3 3456899999831 111111100 0
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+......+... . .... ...+.++.
T Consensus 223 ------------~~~~~~~~~~~-------------------~-~~~~-----------~~~~~~~~------------- 246 (412)
T 3fht_A 223 ------------PDPNVIKLKRE-------------------E-ETLD-----------TIKQYYVL------------- 246 (412)
T ss_dssp ------------SSCEEECCCGG-------------------G-SSCT-----------TEEEEEEE-------------
T ss_pred ------------CCCeEEeeccc-------------------c-cccc-----------CceEEEEE-------------
Confidence 00000000000 0 0000 00000000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
......|+..|.+++... .+.++||||+....++.|.++|...++.+..++|.++.++|.++++.|+++...
T Consensus 247 -----~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~- 318 (412)
T 3fht_A 247 -----CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK- 318 (412)
T ss_dssp -----CSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS-
T ss_pred -----cCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc-
Confidence 001123677777777654 467999999999999999999999999999999999999999999999987765
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCc------cchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP------~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+||+|+++++|||++++++||+||++|++ ..|+||+||++|.|+...+ |.|+.. .-+..++...+.+
T Consensus 319 --vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 319 --VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp --EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE--EEEECS-HHHHHHHHHHHHH
T ss_pred --EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE--EEEEcC-hhhHHHHHHHHHH
Confidence 79999999999999999999999999987 5899999999999965444 434433 2334555555444
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=2.7e-27 Score=300.42 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=221.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|+|||.+++.+++. +.++|+..+||+|||+.++..+. .. .+.+|||+|. +|+.+|.+++..+. +.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~~----~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--LL----NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--HS----SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--Hh----CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 4789999999998875 67899999999999987754443 11 3568999998 66688999998874 56
Q ss_pred EEEEcCChHHHH-HHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc---hHHH----HHHh
Q 000047 1168 KIVYCGPPEERR-RLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC---KLNA----DLKH 1239 (2693)
Q Consensus 1168 VIvy~Gs~~eRk-~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS---Klsr----aLk~ 1239 (2693)
+..+.+...... ......+..+..+|+++|++.+........+...++++|||||||++..+.. ..+. .+..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 666666543221 1112334456799999999999653322345557899999999999976542 1222 2334
Q ss_pred hcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1240 YQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1240 Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 45567899999996444444444333221111000 00
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
..|.. .+.+
T Consensus 209 ----------~r~~l-~~~v------------------------------------------------------------ 217 (523)
T 1oyw_A 209 ----------DRPNI-RYML------------------------------------------------------------ 217 (523)
T ss_dssp ----------CCTTE-EEEE------------------------------------------------------------
T ss_pred ----------CCCce-EEEE------------------------------------------------------------
Confidence 00000 0000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.....++..|.++|... .+.++||||..+..++.+.++|...|+.+..+||+++.++|.++++.|.+++..
T Consensus 218 ------~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~- 288 (523)
T 1oyw_A 218 ------MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ- 288 (523)
T ss_dssp ------EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS-
T ss_pred ------EeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe-
Confidence 00012445555666543 578999999999999999999999999999999999999999999999987765
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+||+|.++|+|||++++++||+||++|++..|.|++||++|.|+...+.+|
T Consensus 289 --vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 289 --IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp --EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred --EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 799999999999999999999999999999999999999999987665554
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=5e-27 Score=286.21 Aligned_cols=318 Identities=16% Similarity=0.224 Sum_probs=220.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RI 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sL 1166 (2693)
.+++|||.+++..++. +.+.|+..+||+|||+.++..+.++. ...+.+|||+|+ .|+.||.++|.+|+. ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4688999999988764 67899999999999997766655544 234568999998 556889999999986 77
Q ss_pred cEEEEcCChHHHHH-HHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-------------cch
Q 000047 1167 HKIVYCGPPEERRR-LFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-------------SCK 1232 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~-l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-------------sSK 1232 (2693)
++..++|......+ .....+..+..+|+|+|++.+..... .+...++++|||||||++..+ ...
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~--~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNRE--KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHH--HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHH--HhccccccEEEEeChHhhhhccchhhhHHhhcCCcHH
Confidence 88888887644211 11123334568999999999976443 355568999999999987432 222
Q ss_pred -HHHHHHhh------------cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhh
Q 000047 1233 -LNADLKHY------------QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALL 1299 (2693)
Q Consensus 1233 -lsraLk~L------------ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~L 1299 (2693)
+...+..+ .....+++|||+....+.+.+ +..++..... .
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~--~--------- 223 (414)
T 3oiy_A 171 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVG--R--------- 223 (414)
T ss_dssp HHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSS--C---------
T ss_pred HHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcC--c---------
Confidence 23333333 345668999997544322111 0000000000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHh
Q 000047 1300 SEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNI 1379 (2693)
Q Consensus 1300 seEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKI 1379 (2693)
....+....+.
T Consensus 224 ----------------------------~~~~~~~i~~~----------------------------------------- 234 (414)
T 3oiy_A 224 ----------------------------LVSVARNITHV----------------------------------------- 234 (414)
T ss_dssp ----------------------------CCCCCCSEEEE-----------------------------------------
T ss_pred ----------------------------cccccccchhe-----------------------------------------
Confidence 00000000000
Q ss_pred hCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEE-EEeC
Q 000047 1380 CNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RLDG 1458 (2693)
Q Consensus 1380 CnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikyl-RLDG 1458 (2693)
+....|...|.++|.. .+.++||||+....++.|.++|...|+.+. .+||
T Consensus 235 --------------------------~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~ 285 (414)
T 3oiy_A 235 --------------------------RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE 285 (414)
T ss_dssp --------------------------EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSC
T ss_pred --------------------------eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcC
Confidence 0011355666666665 358999999999999999999999999998 8888
Q ss_pred CCCHHHHHHHHHHHhCCCCCceEEEee----ecccccccCccc-cCEEEEecCC--CCccchhhhhhhhcccCCc--ccE
Q 000047 1459 HTSGGDRGALIDKFNQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTD--WNPQVDLQAQARAHRIGQK--RDV 1529 (2693)
Q Consensus 1459 STS~eERqeiId~FN~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDpp--WNP~~diQAIGRAHRIGQk--KeV 1529 (2693)
. +|. ++.|+++..+ +||+ |+++++|||+++ +++||+||++ |++..|+|++||++|.|+. +..
T Consensus 286 ~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g 356 (414)
T 3oiy_A 286 F----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKG 356 (414)
T ss_dssp H----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCE
T ss_pred c----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcce
Confidence 3 454 9999987765 6777 999999999999 9999999999 9999999999999999986 566
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHH
Q 000047 1530 LVLRFETVQTVEEQVRASAEHKLG 1553 (2693)
Q Consensus 1530 ~VyRLIT~gSIEEkIleraekKl~ 1553 (2693)
.+|.|+ -|..++...++.+.
T Consensus 357 ~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 357 VSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEEC----CCHHHHHHHHHHHH
T ss_pred EEEEEE----ccHHHHHHHHHHhc
Confidence 666666 24455555555544
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=2.5e-26 Score=293.40 Aligned_cols=340 Identities=15% Similarity=0.208 Sum_probs=220.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+..... ...+|||||+ .|+.||.++|.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 4699999999987762 136678999999999999987776665544321 2358999998 55688999999864
Q ss_pred ------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHH
Q 000047 1164 ------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLN 1234 (2693)
Q Consensus 1164 ------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Kls 1234 (2693)
+.+.+..+.|........ ..+.....+|+|+|++.|....... ......+++|||||||+|..... .+.
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~--~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~ 197 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 197 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred hhcccccceEEEEEECCccHHHHH--HHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHH
Confidence 445666666665443322 1223347899999999997644322 22334689999999999976542 222
Q ss_pred HHHHhhc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ADLKHYQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 raLk~Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
..+..+. ....++||||+-. .+.+ ++..
T Consensus 198 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~---------------------------------------- 233 (579)
T 3sqw_A 198 TISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANN---------------------------------------- 233 (579)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTT----------------------------------------
T ss_pred HHHHHhhhhhcccccCceEEEEeccCCh-HHHH---HHHH----------------------------------------
Confidence 2222221 3357999999721 1111 0000
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
.+.......+... ...... .. ....+.+..
T Consensus 234 -----------------------~l~~~~~~~~~~~-------------------~~~~~~-~~-------~~i~~~~~~ 263 (579)
T 3sqw_A 234 -----------------------IMNKKECLFLDTV-------------------DKNEPE-AH-------ERIDQSVVI 263 (579)
T ss_dssp -----------------------TCCSSEEEEEESS-------------------CSSSCS-SC-------TTEEEEEEE
T ss_pred -----------------------HcCCCceEEEeec-------------------Cccccc-cc-------cccceEEEE
Confidence 0000000000000 000000 00 000000000
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhc---CCeEEEEeCCCC
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTS 1461 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~r---GikylRLDGSTS 1461 (2693)
. .. ....+...+..++..+. ..+.++||||.....++.+.++|... ++.+..+||.++
T Consensus 264 ~-----------~~------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 264 S-----------EK------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp E-----------SS------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred e-----------cc------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 0 00 00112333333333333 45789999999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+|.+++++|+.+... +||+|+++++|||++.+++||+||++|++..|+|++||++|.|+...+.+ |++.. |
T Consensus 327 ~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e 399 (579)
T 3sqw_A 327 QNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--E 399 (579)
T ss_dssp HHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--G
T ss_pred HHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE--EEccc--H
Confidence 99999999999887654 89999999999999999999999999999999999999999997554443 44443 4
Q ss_pred HHHHHHHHH
Q 000047 1542 EQVRASAEH 1550 (2693)
Q Consensus 1542 EkIleraek 1550 (2693)
...+..++.
T Consensus 400 ~~~~~~l~~ 408 (579)
T 3sqw_A 400 LPFVRELED 408 (579)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=3.8e-26 Score=289.17 Aligned_cols=339 Identities=15% Similarity=0.208 Sum_probs=217.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC----CCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND----RGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~----~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||+|+ .|..||.++|.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 4699999999988762 135678999999999999988776665544332 2358999998 55688999998863
Q ss_pred ------CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEccccccccccc--hHH
Q 000047 1164 ------PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNASC--KLN 1234 (2693)
Q Consensus 1164 ------PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~sS--Kls 1234 (2693)
+...+..+.|........ ..+.....+|+|+|++.|....... ......+++|||||||++..... .+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~ 248 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLE 248 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHH--HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHH
Confidence 345566666655433322 1222347899999999997644322 12234589999999999876541 222
Q ss_pred HHHHhhc--------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ADLKHYQ--------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 raLk~Lk--------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
..+..+. ....++||||+-. .+.+ ++.. +
T Consensus 249 ~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~---~~~~---------------~------------------------ 285 (563)
T 3i5x_A 249 TISGILNEKNSKSADNIKTLLFSATLDD-KVQK---LANN---------------I------------------------ 285 (563)
T ss_dssp HHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHH---HTTT---------------T------------------------
T ss_pred HHHHhhhhccccCccCceEEEEEccCCH-HHHH---HHHH---------------h------------------------
Confidence 2222221 2347999999721 1111 0000 0
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCcccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLS 1386 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~ 1386 (2693)
+.......+... ...... .. ....+.+..
T Consensus 286 ------------------------~~~~~~~~~~~~-------------------~~~~~~-~~-------~~~~~~~~~ 314 (563)
T 3i5x_A 286 ------------------------MNKKECLFLDTV-------------------DKNEPE-AH-------ERIDQSVVI 314 (563)
T ss_dssp ------------------------CCSSEEEEEESS-------------------CSSSCS-SC-------TTEEEEEEE
T ss_pred ------------------------cCCCceEEEecc-------------------CCCCcc-cc-------ccCceEEEE
Confidence 000000000000 000000 00 000000000
Q ss_pred chhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhc---CCeEEEEeCCCC
Q 000047 1387 QLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK---QYRYLRLDGHTS 1461 (2693)
Q Consensus 1387 ~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~r---GikylRLDGSTS 1461 (2693)
. .. ........+..++..+. ..+.++||||.....++.+.++|... ++.+..+||+++
T Consensus 315 ~-----------~~------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 315 S-----------EK------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 377 (563)
T ss_dssp E-----------SS------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred C-----------ch------hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCC
Confidence 0 00 00011223333333332 45789999999999999999999876 999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1462 GGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1462 ~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
..+|..+++.|+++... +||+|+++++|||++++++||+||++|++..|+|++||++|.|+...+ +.|++.. |
T Consensus 378 ~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~--e 450 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKD--E 450 (563)
T ss_dssp HHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGG--G
T ss_pred HHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceE--EEEEchh--H
Confidence 99999999999887654 899999999999999999999999999999999999999999965444 4445543 3
Q ss_pred HHHHHHHH
Q 000047 1542 EQVRASAE 1549 (2693)
Q Consensus 1542 EkIlerae 1549 (2693)
...+..+.
T Consensus 451 ~~~~~~l~ 458 (563)
T 3i5x_A 451 LPFVRELE 458 (563)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=4.5e-26 Score=293.38 Aligned_cols=311 Identities=14% Similarity=0.116 Sum_probs=215.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|+|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+ +|+.||.+.|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4799999999998875 778999999999999876544432 24568999998 6678899999998 566
Q ss_pred EEEEcCChHH--HHHHHHhhh--hcCCccEEEEcHHHHHhc---cC--CCcccccCccEEEEccccccccccc-------
Q 000047 1168 KIVYCGPPEE--RRRLFKEKI--VHQKFNVLLTTYEYLMNK---HD--RPKLSKIQWHYIIIDEGHRIKNASC------- 1231 (2693)
Q Consensus 1168 VIvy~Gs~~e--Rk~l~ke~i--~~~kfdVVITTYE~Lik~---~D--r~~L~kikWd~VIIDEAHRIKN~sS------- 1231 (2693)
+..+.|.... +...+. .+ ....++|+++|++.|... .+ ...+...++.+|||||||++..+..
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 7777665432 222221 12 356899999999988531 00 0122334789999999999865431
Q ss_pred hHHHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHH
Q 000047 1232 KLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRL 1311 (2693)
Q Consensus 1232 KlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RL 1311 (2693)
.+......+....+|+|||||-.....++...|.+-.+..+..
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~------------------------------------- 232 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA------------------------------------- 232 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-------------------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-------------------------------------
Confidence 2222233455667899999994332233222221110000000
Q ss_pred HHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhh
Q 000047 1312 HQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAE 1391 (2693)
Q Consensus 1312 hkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~E 1391 (2693)
....|.....+....
T Consensus 233 ----------------~~~r~nl~~~v~~~~------------------------------------------------- 247 (591)
T 2v1x_A 233 ----------------SFNRPNLYYEVRQKP------------------------------------------------- 247 (591)
T ss_dssp ----------------CCCCTTEEEEEEECC-------------------------------------------------
T ss_pred ----------------CCCCcccEEEEEeCC-------------------------------------------------
Confidence 000000000000000
Q ss_pred hhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHH
Q 000047 1392 EVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDK 1471 (2693)
Q Consensus 1392 Eid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~ 1471 (2693)
.....++..|.++|... ..+.++||||..+..++.|.++|...|+.+..+||+++.++|.++++.
T Consensus 248 --------------~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 312 (591)
T 2v1x_A 248 --------------SNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRK 312 (591)
T ss_dssp --------------SSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 00011334444444332 257899999999999999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1472 FNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1472 FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
|..+... +||+|.++|+|||++++++||+||+++++..|.|++||++|.|+...+.+|
T Consensus 313 F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 313 WSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9987765 899999999999999999999999999999999999999999987666555
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.6e-27 Score=298.87 Aligned_cols=315 Identities=17% Similarity=0.169 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCCCcE
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPRIHK 1168 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPsLkV 1168 (2693)
.|++||.+++..++.- .+.++||..+||+|||++++..+...+........+|||||.. |+.||.++|.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6899999999877641 2478999999999999998777766655544455799999986 678999999999865443
Q ss_pred EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc---chHHHHHHhhc-ccc
Q 000047 1169 IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS---CKLNADLKHYQ-SSH 1244 (2693)
Q Consensus 1169 Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s---SKlsraLk~Lk-a~~ 1244 (2693)
.+..+...... .......+|+|+|++.+........+...+|++|||||||++.... ......+..+. ...
T Consensus 219 ~~~~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 219 KTAFGIKDSVP-----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp CEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCccc-----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCe
Confidence 33332221111 1112478999999999877555455556779999999999986522 22223333343 344
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
.|+|||||- +.+.++.. +|..
T Consensus 294 ~i~lSAT~~-~~~~~~~~------------------~~~~---------------------------------------- 314 (508)
T 3fho_A 294 IVLFSATFS-ERVEKYAE------------------RFAP---------------------------------------- 314 (508)
T ss_dssp EEEEESCCS-THHHHHHH------------------HHST----------------------------------------
T ss_pred EEEEeCCCC-HHHHHHHH------------------HhcC----------------------------------------
Confidence 699999983 11221111 1100
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
.... +....... . .....+.+. .
T Consensus 315 --------~~~~--i~~~~~~~------------------~-----------~~~~~~~~~------------------~ 337 (508)
T 3fho_A 315 --------NANE--IRLKTEEL------------------S-----------VEGIKQLYM------------------D 337 (508)
T ss_dssp --------TCEE--ECCCCCC---------------------------------CCCCEEE------------------E
T ss_pred --------CCeE--EEeccccC------------------C-----------cccceEEEE------------------E
Confidence 0000 00000000 0 000000000 0
Q ss_pred hhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEe
Q 000047 1405 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLL 1484 (2693)
......|...|.+++... .+.++||||+....++.|..+|...++.+..+||+++..+|..+++.|+++... +||
T Consensus 338 ~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLV 412 (508)
T 3fho_A 338 CQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLV 412 (508)
T ss_dssp C--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCE
T ss_pred CCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEE
Confidence 011233666777777654 467999999999999999999999999999999999999999999999887765 799
Q ss_pred eecccccccCccccCEEEEecCC------CCccchhhhhhhhcccCCcccEEEE
Q 000047 1485 SIRAGGVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1485 STrAGGeGLNLQaADtVIiyDpp------WNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+++++|||++++++||+||++ +++..+.|++||++|.|+...+.+|
T Consensus 413 aT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 413 TTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred eCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 99999999999999999999999 7899999999999999976555444
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=288.48 Aligned_cols=314 Identities=15% Similarity=0.197 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHH---CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFW---AP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKw---aP 1164 (2693)
..++++|.+++.+++. ..+.+.|++.+||+|||++++..+...+........+|||+|...| .||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4789999999988864 2347889999999999999776665544433333468999998654 6776666554 56
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc--hHHHHHH-hh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC--KLNADLK-HY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk-~L 1240 (2693)
.+.+.+..+..... .......+|+|+|++.+...... ..+...++++|||||||++..... .....+. .+
T Consensus 191 ~~~~~~~~~~~~~~------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLE------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCC------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCcccc------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 67777766653221 11124568999999999775532 234446789999999999865222 1222222 22
Q ss_pred c-ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 Q-SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 k-a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
. ....+++||||- .+++.+...+
T Consensus 265 ~~~~~~i~~SAT~~----~~~~~~~~~~---------------------------------------------------- 288 (479)
T 3fmp_B 265 PRNCQMLLFSATFE----DSVWKFAQKV---------------------------------------------------- 288 (479)
T ss_dssp CTTSEEEEEESCCC----HHHHHHHHHH----------------------------------------------------
T ss_pred CccceEEEEeCCCC----HHHHHHHHHH----------------------------------------------------
Confidence 2 345689999983 1222111110
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+|......+.. .... ... +.+ .++.
T Consensus 289 -----------~~~~~~i~~~~----~~~~-~~~----------------------~~~----~~~~------------- 313 (479)
T 3fmp_B 289 -----------VPDPNVIKLKR----EEET-LDT----------------------IKQ----YYVL------------- 313 (479)
T ss_dssp -----------SSSEEEEEEC-----------------------------------------------------------
T ss_pred -----------cCCCeEEeccc----cccC-cCC----------------------ceE----EEEE-------------
Confidence 11111110000 0000 000 000 0000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
......|+..|.+++... .+.++||||+....++.|..+|...++.+..+||.++..+|..+++.|+++...
T Consensus 314 -----~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~- 385 (479)
T 3fmp_B 314 -----CSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK- 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----eCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc-
Confidence 000122555555555533 356899999999999999999999999999999999999999999999887655
Q ss_pred eEEEeeecccccccCccccCEEEEecCCCCc------cchhhhhhhhcccCCcccEEE
Q 000047 1480 FIFLLSIRAGGVGVNLQAADTVIIFDTDWNP------QVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1480 fVfLLSTrAGGeGLNLQaADtVIiyDppWNP------~~diQAIGRAHRIGQkKeV~V 1531 (2693)
+||+|+++++|||++.+++||+||++|++ ..|+||+||++|.|+...+.+
T Consensus 386 --iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 386 --VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ----------------------------------------------------------
T ss_pred --EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 79999999999999999999999999876 689999999999996554433
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=7.2e-25 Score=299.82 Aligned_cols=310 Identities=15% Similarity=0.203 Sum_probs=218.9
Q ss_pred CCcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP 1164 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP 1164 (2693)
+.+++|||.+++.+++..+.++. ++||+++||+|||++++..+..+... .+.+|||||+. |..||.++|.+++.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHhh
Confidence 35789999999999988766665 89999999999999987665544432 34689999986 55789999999886
Q ss_pred C--CcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1165 R--IHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1165 s--LkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
. +++..+.+.. ..+...+ ..+..+..+|+|+|++.+.+. +...+|++|||||||++. ......++.+
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~-----~~~~~l~lvIiDEaH~~g---~~~~~~l~~l 748 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFG---VRHKERIKAM 748 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSC---HHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC-----ccccccceEEEechHhcC---hHHHHHHHHh
Confidence 4 5667776643 2333332 334556799999999988652 334578999999999974 3445556655
Q ss_pred cc-cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhh
Q 000047 1241 QS-SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFV 1319 (2693)
Q Consensus 1241 ka-~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFL 1319 (2693)
.. .++|+|||||+.+.+...+.-+ .++.
T Consensus 749 ~~~~~vl~lSATp~p~~l~~~~~~~--~~~~------------------------------------------------- 777 (1151)
T 2eyq_A 749 RANVDILTLTATPIPRTLNMAMSGM--RDLS------------------------------------------------- 777 (1151)
T ss_dssp HTTSEEEEEESSCCCHHHHHHHTTT--SEEE-------------------------------------------------
T ss_pred cCCCCEEEEcCCCChhhHHHHHhcC--CCce-------------------------------------------------
Confidence 44 5689999999754322111000 0000
Q ss_pred hhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCC
Q 000047 1320 LRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPK 1399 (2693)
Q Consensus 1320 LRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~ 1399 (2693)
+....|.... .+.
T Consensus 778 -------~i~~~~~~r~-~i~----------------------------------------------------------- 790 (1151)
T 2eyq_A 778 -------IIATPPARRL-AVK----------------------------------------------------------- 790 (1151)
T ss_dssp -------ECCCCCCBCB-CEE-----------------------------------------------------------
T ss_pred -------EEecCCCCcc-ccE-----------------------------------------------------------
Confidence 0000000000 000
Q ss_pred CCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCC
Q 000047 1400 HYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDS 1477 (2693)
Q Consensus 1400 ~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dS 1477 (2693)
..+....+...+..++..+ ..+.++||||+....++.+.++|... ++.+..+||.++..+|++++++|+++..
T Consensus 791 ----~~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~ 865 (1151)
T 2eyq_A 791 ----TFVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 865 (1151)
T ss_dssp ----EEEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSC
T ss_pred ----EEEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 0000001122223333333 35789999999999999999999877 8999999999999999999999998766
Q ss_pred CceEEEeeecccccccCccccCEEEEecC-CCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1478 PFFIFLLSIRAGGVGVNLQAADTVIIFDT-DWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1478 d~fVfLLSTrAGGeGLNLQaADtVIiyDp-pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
+ +||+|+++++|||++.+++||+++. .|++..+.|++||++|.|+.. ++|.++..
T Consensus 866 ~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~ 921 (1151)
T 2eyq_A 866 N---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 921 (1151)
T ss_dssp C---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECC
T ss_pred c---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECC
Confidence 5 7999999999999999999999999 589999999999999999654 44545554
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.7e-24 Score=290.81 Aligned_cols=362 Identities=13% Similarity=0.086 Sum_probs=222.3
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR 1165 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs 1165 (2693)
.+.+|++||.+++.++.. +.+.|++.+||+|||+++...+...+.. .+.+||++|. .|..||..+|.+++.
T Consensus 83 ~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 346899999999998765 7789999999999999987666655532 3568999998 666889999999886
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
.+.++.|.... ....+|+|+|++.|.....+......+|++|||||||++.+.. ..+...+..+. .
T Consensus 155 -~vglltGd~~~----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 -DVGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp -CEEEECSSCEE----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred -CEEEEeCCCcc----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 56667775421 2367899999999876543333444578999999999998753 22333444443 4
Q ss_pred cccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRR 1322 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRR 1322 (2693)
.+.|+||||+- +..+ |..|+...... +..+-
T Consensus 224 ~~il~LSATi~--n~~e------------------~a~~l~~~~~~----------------------------~~~vi- 254 (1010)
T 2xgj_A 224 VRYVFLSATIP--NAME------------------FAEWICKIHSQ----------------------------PCHIV- 254 (1010)
T ss_dssp CEEEEEECCCT--THHH------------------HHHHHHHHHTS----------------------------CEEEE-
T ss_pred CeEEEEcCCCC--CHHH------------------HHHHHHhhcCC----------------------------CeEEE-
Confidence 56799999952 2233 33333210000 00000
Q ss_pred hHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCC
Q 000047 1323 LKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYL 1402 (2693)
Q Consensus 1323 tKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l 1402 (2693)
....-|...++.+...-.. .+..............+........+. .. +......+....
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~----~~~~~~~~~g~~ 314 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD-----------GIYLVVDEKSTFREENFQKAMASISNQ-IG----DDPNSTDSRGKK 314 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS-----------CCEEEECTTCCBCHHHHHHHHHTCC---------------------
T ss_pred ----ecCCCcccceEEEEecCCc-----------ceeeeeccccccchHHHHHHHHHHhhh-hc----cccccccccccc
Confidence 0000111111111100000 000000000000000000000000000 00 000000000000
Q ss_pred Chhhhc---cc-HHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCe-------------------------
Q 000047 1403 PPIVRL---CG-KLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR------------------------- 1452 (2693)
Q Consensus 1403 ~~Lvr~---Sg-KLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGik------------------------- 1452 (2693)
....+. .+ ....+..++..+.. .+.++||||..+..++.+..+|...++.
T Consensus 315 ~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 394 (1010)
T 2xgj_A 315 GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRE 394 (1010)
T ss_dssp --------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTT
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhc
Confidence 000000 00 02233334444333 3469999999999999999988765542
Q ss_pred --------------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ecC----CCCc
Q 000047 1453 --------------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FDT----DWNP 1510 (2693)
Q Consensus 1453 --------------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yDp----pWNP 1510 (2693)
+..+||+++..+|..+++.|+++..+ +|++|.++++|||++.+++||+ ||. +|++
T Consensus 395 l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~ 471 (1010)
T 2xgj_A 395 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471 (1010)
T ss_dssp CHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCH
T ss_pred chhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCH
Confidence 77899999999999999999987766 8999999999999999999999 999 9999
Q ss_pred cchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1511 QVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1511 ~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
..|.|++||++|.|+....++|.|+....
T Consensus 472 ~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp HHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred HHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 99999999999999988889998888653
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.6e-24 Score=285.92 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=208.2
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP- 1164 (2693)
..|+++|.+++..+..-...+ .+.||..+||+|||++++..+...+..+ ..+|||||+.. ..||.++|.+|+.
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~ 443 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSK 443 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhh
Confidence 379999999999988755444 4889999999999999988777666543 45899999854 5789999999986
Q ss_pred -CCcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-h
Q 000047 1165 -RIHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-Y 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-L 1240 (2693)
++++..++|.... +... ...+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. .
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~-~~~l~~g~~~IvVgT~~ll~~~-----~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~ 514 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKI-KSGLRNGQIDVVIGTHALIQED-----VHFKNLGLVIIDEQHRFGVKQ---REALMNKG 514 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHH-HHHHHSSCCCEEEECTTHHHHC-----CCCSCCCEEEEESCCCC--------CCCCSSS
T ss_pred cCceEEEEeCCCCHHHHHHH-HHHHhcCCCCEEEECHHHHhhh-----hhccCCceEEecccchhhHHH---HHHHHHhC
Confidence 5788888886543 2222 2334556799999999988652 334567999999999983221 111111 1
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
...+.|+|||||+...+...+ |.. ..
T Consensus 515 ~~~~vL~mSATp~p~tl~~~~--------------------~g~-------~~--------------------------- 540 (780)
T 1gm5_A 515 KMVDTLVMSATPIPRSMALAF--------------------YGD-------LD--------------------------- 540 (780)
T ss_dssp SCCCEEEEESSCCCHHHHHHH--------------------TCC-------SS---------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHH--------------------hCC-------cc---------------------------
Confidence 346789999999643221100 000 00
Q ss_pred hhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCC
Q 000047 1321 RRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKH 1400 (2693)
Q Consensus 1321 RRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~ 1400 (2693)
..+...+|.....+...
T Consensus 541 ----~s~i~~~p~~r~~i~~~----------------------------------------------------------- 557 (780)
T 1gm5_A 541 ----VTVIDEMPPGRKEVQTM----------------------------------------------------------- 557 (780)
T ss_dssp ----CEEECCCCSSCCCCEEC-----------------------------------------------------------
T ss_pred ----eeeeeccCCCCcceEEE-----------------------------------------------------------
Confidence 00001111110000000
Q ss_pred CCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchH--------HHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHH
Q 000047 1401 YLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTR--------LLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALI 1469 (2693)
Q Consensus 1401 ~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~--------tLDILed~L~~---rGikylRLDGSTS~eERqeiI 1469 (2693)
+....+...+.+.+.+....+++++|||.... .++.+.+.|.. .++.+..+||.++.++|.+++
T Consensus 558 -----~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 558 -----LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp -----CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred -----EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 00001222333444444456778888887553 45677777876 578899999999999999999
Q ss_pred HHHhCCCCCceEEEeeecccccccCccccCEEEEecCCC-CccchhhhhhhhcccCCcccEEEE
Q 000047 1470 DKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDW-NPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1470 d~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppW-NP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+.|+++..+ +||+|+++++|||++++++||+||+++ +...+.|++||++|.|+...|.++
T Consensus 633 ~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 633 LEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp HHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred HHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 999887766 799999999999999999999999985 788899999999999976655443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-23 Score=284.10 Aligned_cols=368 Identities=15% Similarity=0.117 Sum_probs=220.5
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPsL 1166 (2693)
...|++||.+++..+. ++.+.|++.+||+|||++++..+...+.. .+.+||++|.. |..||..+|.+++.
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 4689999999998764 47889999999999999988777666533 34589999985 55889999999987
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-cc
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-SS 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a~ 1243 (2693)
.+.++.|... .....+|+|+|++.|............++++|||||||+|.+.. ..+...+..+. ..
T Consensus 253 ~VglltGd~~----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 DVGLMTGDIT----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp SEEEECSSCB----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred CccEEeCccc----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 5566777532 23568999999999877544333334468999999999997643 22333344443 35
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+.|+||||. .|. .++...+..+... +....... .+|+-++..
T Consensus 323 qvl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~~~----------------------~rp~pl~~~ 364 (1108)
T 3l9o_A 323 RYVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVYTN----------------------FRPTPLQHY 364 (1108)
T ss_dssp EEEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEEEC----------------------CCSSCEEEE
T ss_pred eEEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEecC----------------------CCcccceEE
Confidence 568999994 333 3333322221110 00000000 000000000
Q ss_pred HhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCC
Q 000047 1324 KHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLP 1403 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~ 1403 (2693)
+...-......++. ....+....|......+ ........... ..+.. .. ..+..
T Consensus 365 ---~~~~~~~~~~~~vd-~~~~~~~~~~~~~~~~l---~~~~~~~~~~~--~~~~~-------------~~----~~~~~ 418 (1108)
T 3l9o_A 365 ---LFPAHGDGIYLVVD-EKSTFREENFQKAMASI---SNQIGDDPNST--DSRGK-------------KG----QTYKG 418 (1108)
T ss_dssp ---EEETTSSCCEEEEE-TTTEECHHHHHHHHTTC---------------------------------------------
T ss_pred ---EeecCCcceeeeec-cccchhhhhHHHHHHHH---Hhhhccccccc--ccccc-------------cc----ccccc
Confidence 00000000000000 00000001111110000 00000000000 00000 00 00000
Q ss_pred hhhhcccHHHHHHHHHHHhhc-CCCeEEEEEcchHHHHHHHHHHhhcCCe------------------------------
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKA-TDHRVLFFSTMTRLLDVMEDYLTFKQYR------------------------------ 1452 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLka-tGhKVLIFSQft~tLDILed~L~~rGik------------------------------ 1452 (2693)
. .........+..++..+.. .+.++||||.....++.+..+|...++.
T Consensus 419 ~-~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 497 (1108)
T 3l9o_A 419 G-SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHH
T ss_pred c-cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 0 0000012334444444433 3569999999999999999988654433
Q ss_pred ---------EEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccc--------hhh
Q 000047 1453 ---------YLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQV--------DLQ 1515 (2693)
Q Consensus 1453 ---------ylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~--------diQ 1515 (2693)
+..+||+++..+|..+++.|.++... +||+|+++++|||++++++||+++.+|++.. |+|
T Consensus 498 ~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQ 574 (1108)
T 3l9o_A 498 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 574 (1108)
T ss_dssp HHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHH
T ss_pred HHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHH
Confidence 78899999999999999999988766 8999999999999999999999999888776 999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHH
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEE 1542 (2693)
++||++|.|.....++|.++.....+.
T Consensus 575 r~GRAGR~G~d~~G~~ill~~~~~~~~ 601 (1108)
T 3l9o_A 575 MSGRAGRRGLDDRGIVIMMIDEKMEPQ 601 (1108)
T ss_dssp HHHHSCCSSSCSSEEEEEEECCCCCHH
T ss_pred hhcccCCCCCCCceEEEEEecCCcCHH
Confidence 999999999988999998888774443
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=5e-23 Score=268.94 Aligned_cols=329 Identities=16% Similarity=0.144 Sum_probs=215.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sLk 1167 (2693)
.|+++|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. +..+|..+++++.. ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478999999999999999976665444322 35699999987 66889999966543 677
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQSSHR 1245 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka~~R 1245 (2693)
+..+.|......+ .....+|+|+|++.+............++++|||||+|.+.+.. ..+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8888876432211 12378999999998865433222223467999999999987522 233344455566778
Q ss_pred ccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 000047 1246 LLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKH 1325 (2693)
Q Consensus 1246 LLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKk 1325 (2693)
|+||||+- +.. .|.+||..+...... +|+
T Consensus 179 i~lSATl~--n~~------------------~~~~~l~~~~~~~~~------------------------r~~------- 207 (715)
T 2va8_A 179 LALSATIS--NYK------------------QIAKWLGAEPVATNW------------------------RPV------- 207 (715)
T ss_dssp EEEESCCT--THH------------------HHHHHHTCEEEECCC------------------------CSS-------
T ss_pred EEEcCCCC--CHH------------------HHHHHhCCCccCCCC------------------------CCC-------
Confidence 99999983 233 344444322100000 000
Q ss_pred HHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChh
Q 000047 1326 KVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPI 1405 (2693)
Q Consensus 1326 DVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~L 1405 (2693)
| .+..+...- ... .++.......... .+
T Consensus 208 ------~--l~~~~~~~~-------------------~~~----------------~~~~~~~~~~~~~---------~~ 235 (715)
T 2va8_A 208 ------P--LIEGVIYPE-------------------RKK----------------KEYNVIFKDNTTK---------KV 235 (715)
T ss_dssp ------C--EEEEEEEEC-------------------SST----------------TEEEEEETTSCEE---------EE
T ss_pred ------C--ceEEEEecC-------------------Ccc----------------cceeeecCcchhh---------hc
Confidence 1 110000000 000 0000000000000 00
Q ss_pred hhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcC-----------------------------------
Q 000047 1406 VRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQ----------------------------------- 1450 (2693)
Q Consensus 1406 vr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rG----------------------------------- 1450 (2693)
.....++..+.+++ ..++++|||+.....++.+...|....
T Consensus 236 ~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 236 HGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp ESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 00112333333333 467899999999999998888886532
Q ss_pred -CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec-------CCCCccchhhhhh
Q 000047 1451 -YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD-------TDWNPQVDLQAQA 1518 (2693)
Q Consensus 1451 -ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD-------ppWNP~~diQAIG 1518 (2693)
+.+..+||+++.++|..+.+.|.++... +||+|.++++|||++++++||. || .++++..+.|++|
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 3488899999999999999999887655 7999999999999999999999 99 8999999999999
Q ss_pred hhcccCCcccEEEEEEEeCCC
Q 000047 1519 RAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1519 RAHRIGQkKeV~VyRLIT~gS 1539 (2693)
||+|.|+.....+|+|++...
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGG
T ss_pred hcCCCCCCCCceEEEEeCCch
Confidence 999999988888999987765
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=2.7e-23 Score=271.35 Aligned_cols=323 Identities=19% Similarity=0.167 Sum_probs=218.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaP-sLk 1167 (2693)
.|++||.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|||+|.. +..+|.+++++|.. +++
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999998854 37899999999999999997666554432 35699999986 66889999976654 578
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhh----c
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHY----Q 1241 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~L----k 1241 (2693)
+..+.|...... ......+|+|+|++.+............++++|||||+|.+.+. ...+...+..+ .
T Consensus 98 v~~~~G~~~~~~------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCS------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcch------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 888888643221 11247899999999886543332222346799999999998763 22233333333 2
Q ss_pred ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 000047 1242 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLR 1321 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLR 1321 (2693)
..+.|+||||+- +..+ |.+|+..+.....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~~------------------------------- 200 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVSD------------------------------- 200 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEECC-------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccCC-------------------------------
Confidence 456799999972 2333 3344432110000
Q ss_pred hhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCC
Q 000047 1322 RLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHY 1401 (2693)
Q Consensus 1322 RtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~ 1401 (2693)
..|-..+..+...-. + +... .....
T Consensus 201 --------~r~~~l~~~~~~~~~-------------~-------------------------~~~~---~~~~~------ 225 (702)
T 2p6r_A 201 --------WRPVPLVEGVLCEGT-------------L-------------------------ELFD---GAFST------ 225 (702)
T ss_dssp --------CCSSCEEEEEECSSE-------------E-------------------------EEEE---TTEEE------
T ss_pred --------CCCccceEEEeeCCe-------------e-------------------------eccC---cchhh------
Confidence 000001110000000 0 0000 00000
Q ss_pred CChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------------------CC
Q 000047 1402 LPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QY 1451 (2693)
Q Consensus 1402 l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------Gi 1451 (2693)
.+.-.+...+.+++ ..++++|||+..+..++.+...|... ++
T Consensus 226 ----~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 226 ----SRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp ----EEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred ----hhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00000233333333 46789999999999988888777542 23
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec---CCCCccchhhhhhhhcccC
Q 000047 1452 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD---TDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1452 kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD---ppWNP~~diQAIGRAHRIG 1524 (2693)
.+..+||+++.++|..+.+.|+++... +||+|.++++|||++++++||. || .++++..+.|++|||+|.|
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g 374 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTT
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCC
Confidence 467799999999999999999887655 7999999999999999999999 77 7899999999999999999
Q ss_pred CcccEEEEEEEeCCCHHH
Q 000047 1525 QKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1525 QkKeV~VyRLIT~gSIEE 1542 (2693)
+.+...+|.|++....+.
T Consensus 375 ~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 375 MDERGEAIIIVGKRDREI 392 (702)
T ss_dssp TCSCEEEEEECCGGGHHH
T ss_pred CCCCceEEEEecCccHHH
Confidence 988899999998876543
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=6.2e-23 Score=268.65 Aligned_cols=323 Identities=17% Similarity=0.124 Sum_probs=218.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC-CCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP-RIH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP-sLk 1167 (2693)
.|++||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .+..+|..++.+|.. +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999852 23478899999999999999855444333222 3568999997 566889999976654 678
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-ccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-SSH 1244 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a~~ 1244 (2693)
+..++|...... ......+|+|+|++.+............++++|||||+|++... ...+...+..+. ..+
T Consensus 98 v~~~~G~~~~~~------~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKD------EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCC------GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCccc------cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 888888543221 11247899999999886543222222346799999999999752 223333444454 467
Q ss_pred cccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhH
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLK 1324 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtK 1324 (2693)
.|+||||+- +.. .|.+|+..+.....
T Consensus 172 ii~lSATl~--n~~------------------~~~~~l~~~~~~~~---------------------------------- 197 (720)
T 2zj8_A 172 IIGLSATIG--NPE------------------ELAEWLNAELIVSD---------------------------------- 197 (720)
T ss_dssp EEEEECCCS--CHH------------------HHHHHTTEEEEECC----------------------------------
T ss_pred EEEEcCCcC--CHH------------------HHHHHhCCcccCCC----------------------------------
Confidence 799999973 233 34444432110000
Q ss_pred hHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCCh
Q 000047 1325 HKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPP 1404 (2693)
Q Consensus 1325 kDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~ 1404 (2693)
..|-..+..+.... .+... . ... +
T Consensus 198 -----~rp~~l~~~~~~~~-------------~~~~~-~--~~~--------------~--------------------- 221 (720)
T 2zj8_A 198 -----WRPVKLRRGVFYQG-------------FVTWE-D--GSI--------------D--------------------- 221 (720)
T ss_dssp -----CCSSEEEEEEEETT-------------EEEET-T--SCE--------------E---------------------
T ss_pred -----CCCCcceEEEEeCC-------------eeecc-c--cch--------------h---------------------
Confidence 00101111100000 00000 0 000 0
Q ss_pred hhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------C---------------C
Q 000047 1405 IVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------Q---------------Y 1451 (2693)
Q Consensus 1405 Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------G---------------i 1451 (2693)
....++..+.+++ ..++++||||..+..++.+...|... + +
T Consensus 222 --~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 222 --RFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp --ECSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred --hhhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 0011233333333 45789999999999988888877642 1 2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec----CCCCccchhhhhhhhccc
Q 000047 1452 RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD----TDWNPQVDLQAQARAHRI 1523 (2693)
Q Consensus 1452 kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD----ppWNP~~diQAIGRAHRI 1523 (2693)
.+..+||+++.++|..+.+.|+++... +||+|.++++|||++++++||. || .++++..+.|++|||+|.
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~ 372 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRP 372 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCC
Confidence 488999999999999999999887655 7999999999999999999998 88 689999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHH
Q 000047 1524 GQKRDVLVLRFETVQTVEE 1542 (2693)
Q Consensus 1524 GQkKeV~VyRLIT~gSIEE 1542 (2693)
|+.+...+|.|++....+.
T Consensus 373 g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 373 KYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TTCSEEEEEEECSSSCHHH
T ss_pred CCCCCceEEEEecCccHHH
Confidence 9988889999999887554
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=3.4e-22 Score=270.33 Aligned_cols=375 Identities=15% Similarity=0.091 Sum_probs=228.3
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI 1166 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL 1166 (2693)
+.+|++||.+++..+.. +.+.|++.+||+|||++++..+..++.. .+.+|||+|. .|..||.++|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999987764 7889999999999999876666555432 3458999997 56688999999999888
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~ 1243 (2693)
.+..++|... .....+|+|+|++.|........+...++++|||||||++.+. ...+...+..+.. .
T Consensus 110 ~v~~l~G~~~----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQ----------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCE----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCc----------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 8988888642 2346899999999997654433344457899999999999764 3344455555543 5
Q ss_pred ccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhh
Q 000047 1244 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRL 1323 (2693)
Q Consensus 1244 ~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRt 1323 (2693)
+.|+||||+- +..+ |.+|+........ +++
T Consensus 180 ~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~~---------------------------~vi--- 209 (997)
T 4a4z_A 180 KFILLSATVP--NTYE------------------FANWIGRTKQKNI---------------------------YVI--- 209 (997)
T ss_dssp EEEEEECCCT--THHH------------------HHHHHHHHHTCCE---------------------------EEE---
T ss_pred CEEEEcCCCC--ChHH------------------HHHHHhcccCCce---------------------------EEE---
Confidence 6699999973 2223 3344321000000 000
Q ss_pred HhHHhhcCccceeEeee--------c-cccHHHHHHHHHHHHHhhccCCCC----------------------Ccch---
Q 000047 1324 KHKVENELPEKIERLVR--------C-EASAYQKLLMKRVEENLGSIGNSK----------------------GRSV--- 1369 (2693)
Q Consensus 1324 KkDVekeLP~KiE~vV~--------c-eLSa~Qk~LYk~Lee~l~si~~sk----------------------~rsl--- 1369 (2693)
.....|...++.+. + ....+....|......+....... .+..
T Consensus 210 ---~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~ 286 (997)
T 4a4z_A 210 ---STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGG 286 (997)
T ss_dssp ---ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------
T ss_pred ---ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 00000000000000 0 000000001111000000000000 0000
Q ss_pred ---hHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH
Q 000047 1370 ---HNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL 1446 (2693)
Q Consensus 1370 ---ln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L 1446 (2693)
...-..-+..+.-+.. .... ...+.........++..|.++|.. ....++||||.....++.+..+|
T Consensus 287 ~~~~~~g~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 287 RGNSTRGGANRGGSRGAGA------IGSN--KRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp --------------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTT
T ss_pred ccccccccccccccccccc------cccc--ccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHH
Confidence 0000000000000000 0000 000000001122355566666654 24579999999999999999999
Q ss_pred hhcCC---------------------------------------eEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1447 TFKQY---------------------------------------RYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1447 ~~rGi---------------------------------------kylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...++ .+..+||+++..+|..+++.|+.+..+ +|++|.
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~ 433 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATE 433 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEch
Confidence 77665 478999999999999999999988766 899999
Q ss_pred ccccccCccccCEEEEecCCC---------CccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDW---------NPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRA 1546 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppW---------NP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIle 1546 (2693)
++++|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.++..+..++..+.
T Consensus 434 ~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 434 TFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp HHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred HhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 9999999999 7777766555 99999999999999999988889888876666655554
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=2.4e-21 Score=264.18 Aligned_cols=320 Identities=16% Similarity=0.228 Sum_probs=218.9
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC-CC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA-PR 1165 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa-Ps 1165 (2693)
+.++.++|.+++..++. +.+.|+...||+|||+.++..+.+++ .....+|||+|+.. ..||.+.|.+++ .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34789999999987765 67899999999999997766666555 23345899999855 578999999976 35
Q ss_pred CcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc-------------
Q 000047 1166 IHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS------------- 1230 (2693)
Q Consensus 1166 LkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s------------- 1230 (2693)
+++..++|.... +... ...+..+.++|+|+|++.|.+... .+...++++|||||||++....
T Consensus 149 i~v~~l~Gg~~~~er~~~-~~~l~~g~~~IlV~Tp~rL~~~l~--~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~ 225 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKF-EKSFEEDDYHILVFSTQFVSKNRE--KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 225 (1104)
T ss_dssp SCEEEECTTCCTTHHHHH-HHHHHTSCCSEEEEEHHHHHHSHH--HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCC
T ss_pred CeEEEEeCCCCHHHHHHH-HHHHhCCCCCEEEECHHHHHHHHH--hhcccCcCEEEEeCCCccccccccchhhhHhcCCC
Confidence 688888886543 2222 223444569999999999976543 2455678999999999865321
Q ss_pred ch-HHHHHHhhc------------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhh
Q 000047 1231 CK-LNADLKHYQ------------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEA 1297 (2693)
Q Consensus 1231 SK-lsraLk~Lk------------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~ 1297 (2693)
.. +...+..+. ....+++|||+....+.+++ +...+. +.....
T Consensus 226 ~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~--i~v~~~------ 281 (1104)
T 4ddu_A 226 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLN--FTVGRL------ 281 (1104)
T ss_dssp HHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTC--CCCCBC------
T ss_pred HHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhccee--EEeccC------
Confidence 11 233333332 34668999997544332211 000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHH
Q 000047 1298 LLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELR 1377 (2693)
Q Consensus 1298 ~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLR 1377 (2693)
...+....+
T Consensus 282 -------------------------------~~~~~~i~~---------------------------------------- 290 (1104)
T 4ddu_A 282 -------------------------------VSVARNITH---------------------------------------- 290 (1104)
T ss_dssp -------------------------------CCCCCCEEE----------------------------------------
T ss_pred -------------------------------CCCcCCcee----------------------------------------
Confidence 000000000
Q ss_pred HhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEE-EE
Q 000047 1378 NICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYL-RL 1456 (2693)
Q Consensus 1378 KICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikyl-RL 1456 (2693)
.+..+.|...|.++|..+ +.++||||+....++.|..+|...|+.+. .+
T Consensus 291 ---------------------------~~~~~~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~l 340 (1104)
T 4ddu_A 291 ---------------------------VRISSRSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETW 340 (1104)
T ss_dssp ---------------------------EEESCCCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESS
T ss_pred ---------------------------EEEecCHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEe
Confidence 000113555666666652 47999999999999999999999999998 99
Q ss_pred eCCCCHHHHHHHHHHHhCCCCCceEEEee----ecccccccCccc-cCEEEEecCCC-----------------------
Q 000047 1457 DGHTSGGDRGALIDKFNQQDSPFFIFLLS----IRAGGVGVNLQA-ADTVIIFDTDW----------------------- 1508 (2693)
Q Consensus 1457 DGSTS~eERqeiId~FN~~dSd~fVfLLS----TrAGGeGLNLQa-ADtVIiyDppW----------------------- 1508 (2693)
|| +|.+ +++|+++..+ +||+ |+++++|||+++ +++||+||+|.
T Consensus 341 hg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~ 411 (1104)
T 4ddu_A 341 SE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMG 411 (1104)
T ss_dssp SS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHS
T ss_pred cC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 98 3555 9999988766 6788 999999999999 99999999998
Q ss_pred -------------------------------------------------CccchhhhhhhhcccCCccc--EEEEEEEeC
Q 000047 1509 -------------------------------------------------NPQVDLQAQARAHRIGQKRD--VLVLRFETV 1537 (2693)
Q Consensus 1509 -------------------------------------------------NP~~diQAIGRAHRIGQkKe--V~VyRLIT~ 1537 (2693)
++..|+||.||++|+|...- ...+-++
T Consensus 412 ~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~-- 489 (1104)
T 4ddu_A 412 LIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 489 (1104)
T ss_dssp SCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--
Confidence 67789999999999876432 2222233
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 000047 1538 QTVEEQVRASAEHKLGVA 1555 (2693)
Q Consensus 1538 gSIEEkIleraekKl~Li 1555 (2693)
-|++++..+++++...
T Consensus 490 --~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 490 --EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHHhhh
Confidence 2567777777776644
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.1e-20 Score=255.39 Aligned_cols=350 Identities=17% Similarity=0.168 Sum_probs=208.4
Q ss_pred CcchHHHHHHHHHHHHHhhc----------CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNN----------QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWES 1157 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n----------~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~e 1157 (2693)
..|||||.+++.+++..+.. +.+||+++.||+|||++++.++ .++........+|||||. .|..||..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 46999999999999875432 3689999999999999997666 444333334579999995 66799999
Q ss_pred HHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEccccccccccchHHH
Q 000047 1158 EINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNASCKLNA 1235 (2693)
Q Consensus 1158 EfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~sSKlsr 1235 (2693)
+|..|.+.. ++.+.... .+ ...+.....+|+|+|++.|....... ......+.+||||||||+... ..++
T Consensus 349 ~f~~f~~~~---v~~~~s~~--~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~ 420 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSENTA--GL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQK 420 (1038)
T ss_dssp HHHTTSTTC---SSSSCCCH--HH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHH
T ss_pred HHHHhcccc---cccccCHH--HH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHH
Confidence 999998652 11221111 11 12222357899999999997643211 112236899999999998642 2344
Q ss_pred HH-HhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHH
Q 000047 1236 DL-KHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQV 1314 (2693)
Q Consensus 1236 aL-k~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkV 1314 (2693)
.+ ..+...++|+|||||....-. .+. ......|+.++.... +...
T Consensus 421 ~I~~~~p~a~~lgfTATP~~~~~~-------------~~~-~~t~~~FG~~i~~Y~--------------------l~~A 466 (1038)
T 2w00_A 421 NLKKKFKRYYQFGFTGTPIFPENA-------------LGS-ETTASVFGRELHSYV--------------------ITDA 466 (1038)
T ss_dssp HHHHHCSSEEEEEEESSCCCSTTC-------------TTS-CCHHHHHCSEEEEEC--------------------HHHH
T ss_pred HHHHhCCcccEEEEeCCccccccc-------------hhh-hHHHHHhCCeeEeec--------------------HHHH
Confidence 44 456778899999999753200 000 011222332221100 0000
Q ss_pred hhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhh
Q 000047 1315 LRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVD 1394 (2693)
Q Consensus 1315 LrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid 1394 (2693)
++ + ..-+|.+.++. ...+. ++.+. .... ...+..+- +
T Consensus 467 I~---------d-g~l~p~~v~y~---~v~~~----~~~~~-----~e~d--------~~~~~~i~-~------------ 503 (1038)
T 2w00_A 467 IR---------D-EKVLKFKVDYN---DVRPQ----FKSLE-----TETD--------EKKLSAAE-N------------ 503 (1038)
T ss_dssp HH---------H-TSSCCEEEEEC---CCCGG----GHHHH-----TCCC--------HHHHHHTC-S------------
T ss_pred Hh---------C-CCcCCeEEEEE---eccch----hhhcc-----cccc--------HHHHHHHH-H------------
Confidence 00 0 00122221111 00000 00000 0000 00000000 0
Q ss_pred ccCCCCCCChhhhcccHHHHHH-HHHHHhhc---------CCCeEEEEEcchHHHHHHHHHHhhcC------------Ce
Q 000047 1395 TLIPKHYLPPIVRLCGKLEMLD-RLLPKLKA---------TDHRVLFFSTMTRLLDVMEDYLTFKQ------------YR 1452 (2693)
Q Consensus 1395 ~li~~~~l~~Lvr~SgKLelLd-eLL~kLka---------tGhKVLIFSQft~tLDILed~L~~rG------------ik 1452 (2693)
. ..+....++..+. .++..+.. .+.++||||..+..+..+.+.|...+ ++
T Consensus 504 ----~----~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 504 ----Q----QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp ----T----TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred ----H----HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 0 0000112233332 23333221 35689999999999999988887654 45
Q ss_pred E-EEEeCC----------C----------CH-----------------------------HHHHHHHHHHhCCCCCceEE
Q 000047 1453 Y-LRLDGH----------T----------SG-----------------------------GDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1453 y-lRLDGS----------T----------S~-----------------------------eERqeiId~FN~~dSd~fVf 1482 (2693)
+ +.++|. + +. .+|..++++|+++..+ +
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---I 652 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---L 652 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---E
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---E
Confidence 5 445543 1 11 1488899999887655 7
Q ss_pred EeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCc-cc-EEEEEEEe
Q 000047 1483 LLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQK-RD-VLVLRFET 1536 (2693)
Q Consensus 1483 LLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQk-Ke-V~VyRLIT 1536 (2693)
||+|+.+.+|+|.+.+ .|+++|.+...+.++||+||+.|.+.. |+ ..|+.|+.
T Consensus 653 LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 653 LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 8899999999999999 678899999999999999999999874 44 67777764
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.84 E-value=2.7e-20 Score=253.44 Aligned_cols=317 Identities=15% Similarity=0.188 Sum_probs=204.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPs-- 1165 (2693)
..+ ++|.+++..++. +.+.|+..+||+|||+.++.++..+.. ....+|||+|+.. ..|+.++|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 347 999999987774 788999999999999855555544432 2345899999855 57899999988753
Q ss_pred C----cEEEEcCChHHHHHH-HHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1166 I----HKIVYCGPPEERRRL-FKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1166 L----kVIvy~Gs~~eRk~l-~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+ .+..++|......+. ....+. . .+|+|+|++.|...... |. ++++|||||||+|.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~-~-~~IlV~TP~~L~~~l~~--L~--~l~~lViDEah~~l~~~~~~~~i~~~l 201 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLR-N-FKIVITTTQFLSKHYRE--LG--HFDFIFVDDVDAILKASKNVDKLLHLL 201 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGG-G-CSEEEEEHHHHHHCSTT--SC--CCSEEEESCHHHHHTSTHHHHHHHHHT
T ss_pred CCccceEEEEeCCCChhhHHHHHhhcc-C-CCEEEEcHHHHHHHHHH--hc--cCCEEEEeChhhhhhccccHHHHHHHh
Confidence 4 677777765433211 112222 2 89999999999885543 33 789999999999988655555555444
Q ss_pred c------------ccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHH
Q 000047 1241 Q------------SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLII 1308 (2693)
Q Consensus 1241 k------------a~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI 1308 (2693)
. ....+++|+|.-.. .++. ..|..
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~---------------------------- 237 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFR---------------------------- 237 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHH----------------------------
T ss_pred CcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhh----------------------------
Confidence 1 23457777776322 1000 00000
Q ss_pred HHHHHHhhhhhhhhhHhHHhhcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccch
Q 000047 1309 NRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQL 1388 (2693)
Q Consensus 1309 ~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~ 1388 (2693)
..+. +.+.. .........+. ++
T Consensus 238 ----~~~~-i~v~~-----~~~~~~~i~~~---------------------------------------------~~--- 259 (1054)
T 1gku_B 238 ----QLLN-FDIGS-----SRITVRNVEDV---------------------------------------------AV--- 259 (1054)
T ss_dssp ----HHHC-CCCSC-----CEECCCCEEEE---------------------------------------------EE---
T ss_pred ----cceE-EEccC-----cccCcCCceEE---------------------------------------------Ee---
Confidence 0000 00000 00000000000 00
Q ss_pred hhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Q 000047 1389 HAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGAL 1468 (2693)
Q Consensus 1389 ~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqei 1468 (2693)
...|...|.++|..+ +.++||||.....++.|.++|... +++..+||.+ .++
T Consensus 260 -------------------~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~ 311 (1054)
T 1gku_B 260 -------------------NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGD 311 (1054)
T ss_dssp -------------------SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHH
T ss_pred -------------------chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHH
Confidence 012334455555443 678999999999999999999988 9999999987 478
Q ss_pred HHHHhCCCCCceEEEee----ecccccccCcccc-CEEEEecCC------------------------------------
Q 000047 1469 IDKFNQQDSPFFIFLLS----IRAGGVGVNLQAA-DTVIIFDTD------------------------------------ 1507 (2693)
Q Consensus 1469 Id~FN~~dSd~fVfLLS----TrAGGeGLNLQaA-DtVIiyDpp------------------------------------ 1507 (2693)
+++|+.+..+ +||+ |+++++|||++.+ ++||+||.+
T Consensus 312 l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1054)
T 1gku_B 312 YEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPA 388 (1054)
T ss_dssp HHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTT
T ss_pred HHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999987765 6777 9999999999995 999999999
Q ss_pred -----------------------------------CCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1508 -----------------------------------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1508 -----------------------------------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
.+...|+||+||++|.|.......+.|+..+ |+.++..+.+++
T Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l 466 (1054)
T 1gku_B 389 VERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERA 466 (1054)
T ss_dssp TSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHH
Confidence 7899999999999999876432223333333 455666666665
Q ss_pred HH
Q 000047 1553 GV 1554 (2693)
Q Consensus 1553 ~L 1554 (2693)
..
T Consensus 467 ~~ 468 (1054)
T 1gku_B 467 KL 468 (1054)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.78 E-value=7.9e-18 Score=221.00 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|.++...+.+|||||......+.|...|...|+.+..|+|.....+|..+...|+.+ . +||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e---EEEeCC
Confidence 34699999998887767788999999999999999999999999999999998877776555555432 2 799999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
++|+|+|+. ...+||+||.+-++..|.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999998 678999999999999999999999999975443
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.78 E-value=4.6e-19 Score=220.27 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=87.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCE----
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT---- 1500 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADt---- 1500 (2693)
.+.++||||.....++.+.+.|...++++..+||. +|.++++.|+++..+ +||+|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999996 688999999988766 899999999999998 555
Q ss_pred -------------EEEecCCCCccchhhhhhhhcccCCccc-EEEE
Q 000047 1501 -------------VIIFDTDWNPQVDLQAQARAHRIGQKRD-VLVL 1532 (2693)
Q Consensus 1501 -------------VIiyDppWNP~~diQAIGRAHRIGQkKe-V~Vy 1532 (2693)
||+||.+.+...|.|++||++|.|.... +.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 6788999999999999999999996543 3343
No 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.76 E-value=6.5e-19 Score=219.90 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEe
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiy 1504 (2693)
.+.++||||+....++.|.++|...|+.+..|||.+ ++++++.|+++... +||+|+++++|||+.. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 356999999999999999999999999999999964 46799999887766 8999999999999999 999999
Q ss_pred c--------------------CCCCccchhhhhhhhcccCCc
Q 000047 1505 D--------------------TDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1505 D--------------------ppWNP~~diQAIGRAHRIGQk 1526 (2693)
| .+.++..|+||+||++|.|..
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 8 889999999999999999973
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.75 E-value=1e-18 Score=217.80 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.++++||||.....++.+.++|...|+++..+|| ++|.++++.|+++... +||+|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3779999999999999999999999999999999 5789999999888766 899999999999999 999986
Q ss_pred ------------------ecCCCCccchhhhhhhhcccCC
Q 000047 1504 ------------------FDTDWNPQVDLQAQARAHRIGQ 1525 (2693)
Q Consensus 1504 ------------------yDppWNP~~diQAIGRAHRIGQ 1525 (2693)
||.+.++..|.|++||++|.|.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 9999999999999999999853
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.75 E-value=3.8e-19 Score=232.25 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=99.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.+.++||||.....++.+.++|...++++..||| ++|.++++.|+++... +||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 5789999999999999999999999999999999 4899999999887766 899999999999999 999997
Q ss_pred -------------------ecCCCCccchhhhhhhhcccC-CcccEEEEEEEe-CCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1504 -------------------FDTDWNPQVDLQAQARAHRIG-QKRDVLVLRFET-VQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1504 -------------------yDppWNP~~diQAIGRAHRIG-QkKeV~VyRLIT-~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
||.+.++..|.|++||++|.| +.-.+ |.|+. ...-|..++...+.+..+...-+..|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a--i~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~g 558 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE--YHYGGGTSEDDTMLAHWTEAKILLDNIHLPNG 558 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE--EEECSCCCCCCTTBHHHHHHHHHHHTSCBTTT
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE--EEEEecCChhHHHHHHHHHHHHhhhhccCCch
Confidence 667888899999999999994 44333 33332 12223344455555555554434433
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.75 E-value=4.9e-18 Score=222.49 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|..+...+.+|||||......+.|...|...|+++..|+|.....+|..+...|+.+ . ++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 35699999999988777889999999999999999999999999999999998777777677778654 2 899999
Q ss_pred ccccccCcccc-------------------------------------CEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQAA-------------------------------------DTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQaA-------------------------------------DtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
.+|+|+|+... .+||+||.+-++..|.|++||++|.|..-..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 5999999999999999999999999975443
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.74 E-value=8.2e-16 Score=201.99 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=101.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+.+.++...+.+|||||......+.|..+|...|+++..|+|.....+|.-+...|+.+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34699999999988878899999999999999999999999999999999998766666566677543 2 799999
Q ss_pred ccccccCcccc----------------------------------------------------CEEEEecCCCCccchhh
Q 000047 1488 AGGVGVNLQAA----------------------------------------------------DTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1488 AGGeGLNLQaA----------------------------------------------------DtVIiyDppWNP~~diQ 1515 (2693)
.+|+|+|+... .+||+||.+.++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999863 49999999999999999
Q ss_pred hhhhhcccCCccc
Q 000047 1516 AQARAHRIGQKRD 1528 (2693)
Q Consensus 1516 AIGRAHRIGQkKe 1528 (2693)
++||++|.|..-.
T Consensus 597 r~GRTGRqGdpG~ 609 (922)
T 1nkt_A 597 LRGRSGRQGDPGE 609 (922)
T ss_dssp HHHTSSGGGCCEE
T ss_pred HhcccccCCCCee
Confidence 9999999997544
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.73 E-value=2.1e-18 Score=215.97 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=88.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE--
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-- 1503 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-- 1503 (2693)
+.++||||.....++.|.++|...|+.+..|+|. +|.++++.|+++... +||+|+++++|||++. ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECC
Confidence 6799999999999999999999999999999994 788899999877665 7999999999999999 99998
Q ss_pred ------------------ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1504 ------------------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1504 ------------------yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
||.|.++..|+||+||++|.|.. +-.+|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 23445556654
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.73 E-value=6.8e-18 Score=218.80 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEE---
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTV--- 1501 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtV--- 1501 (2693)
.+.++||||.....++.|.++|...|+++..||| ++|.++++.|+++... +||+|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg----~~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSR----KTFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECT----TTHHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEECh----HHHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 3679999999999999999999999999999998 3788999999888766 899999999999996 8988
Q ss_pred -----------------EEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC-CHHHHHHHHHHHHHHHHhhhccc
Q 000047 1502 -----------------IIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ-TVEEQVRASAEHKLGVANQSITA 1561 (2693)
Q Consensus 1502 -----------------IiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g-SIEEkIleraekKl~Li~kVIqa 1561 (2693)
|+||.+-++..|+||+||++|.|..+. .+|.|++.. .-|...+..++.++.+.+.-+..
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 777778888899999999999986433 345566521 22334445555555554444433
No 55
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=4.8e-18 Score=198.60 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=123.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
.+|++||.+++.+++. +.++||+++||+|||+++++++..++..+ .+++|||||. .++.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5899999999998876 36789999999999999998887776532 3479999998 677899999999964 3
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+..+.+...... ......+|+|+||+.+.+... ....+|++|||||||++.+. .+...+..+ ...+
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~ 254 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCe
Confidence 45555555432111 123578999999999976422 23357899999999999864 444555666 5788
Q ss_pred cccccccCCCCCHHHHHHHhhhccC
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
+|+|||||. |...++|.++.++.|
T Consensus 255 ~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 255 KFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred EEEEeCCCC-CcchHHHHHHHhcCC
Confidence 999999996 445788888877755
No 56
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.70 E-value=6.1e-17 Score=175.75 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=116.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|... .+.++||||+....++.|.++|...|+.+..++|+++..+|..+++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECG
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 456999999999864 567999999999999999999999999999999999999999999999987655 789999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
++++|||++.+++||+||++|++..|+||+||++|.|+...+ |.|++.. |...+...+.
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~ 152 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEE 152 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999987554 4455543 4444444443
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=4.4e-17 Score=215.97 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=95.5
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhh-----------cCCeEEEEeCCCCHHHHHHHHHHHh-----CCCCCceEEEeeecc
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTF-----------KQYRYLRLDGHTSGGDRGALIDKFN-----QQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~-----------rGikylRLDGSTS~eERqeiId~FN-----~~dSd~fVfLLSTrA 1488 (2693)
.+.++|||+.....++.+.+.|.. .++.++.++|+++.++|.++++.|. .+ ..-+||+|++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g---~~kVlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP---GRKVVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC---CEEEEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC---ceEEEEeCcH
Confidence 477999999999999999888874 6889999999999999999999997 43 3458999999
Q ss_pred cccccCccccCEEEEecC------------------CCCccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1489 GGVGVNLQAADTVIIFDT------------------DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp------------------pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
+++|||+.++++||.|+. +.+...+.||.||++|. ++-.+|+|++....
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999766 88999999999999998 45577888876544
No 58
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=181.32 Aligned_cols=126 Identities=23% Similarity=0.323 Sum_probs=98.8
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
..+.|+..|.++|.... .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +||+|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 34679999999998743 578999999999999999999999999999999999999999999999987765 79999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++++|||++.+++||+||++||+..|+||+||++|.|++.. ++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 999999999999999999999999999999999999997644 45555543
No 59
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=8.8e-17 Score=176.56 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=115.2
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.++|..+ .+.++||||++...++.|.++|...|+.+..++|.++..+|..+++.|+++... +||+|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 356999999999865 467999999999999999999999999999999999999999999999987665 789999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAE 1549 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIlerae 1549 (2693)
++++|||++.+++||+||++||+..|+||+||++|.|+...+.+ |++.. -+..++..+.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~l~ 148 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQ 148 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE--EECSH-HHHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE--EEcCh-hHHHHHHHHH
Confidence 99999999999999999999999999999999999998655443 44432 2334444443
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=2.3e-15 Score=212.76 Aligned_cols=324 Identities=16% Similarity=0.137 Sum_probs=192.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHH-HCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINF-WAP-- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeK-waP-- 1164 (2693)
..+.|.|.+++..+ |+.+.|.+++.+||+|||+++...|...+.... .+.+|+|+|...| .+-..++.+ |..
T Consensus 925 ~~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 925 PFFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp SBCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 35788999998755 557789999999999999998766665554433 3458999998554 555555543 332
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC--CcccccCccEEEEccccccccccchHH-HHHHhh-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR--PKLSKIQWHYIIIDEGHRIKNASCKLN-ADLKHY- 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr--~~L~kikWd~VIIDEAHRIKN~sSKls-raLk~L- 1240 (2693)
++++..+.|......+.. .+.+|+|+|++.+...... ......+..+|||||+|.|.......+ ..+.++
T Consensus 1001 g~~V~~ltGd~~~~~~~~------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~ 1074 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1074 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcchhhc------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHH
Confidence 567888888765433222 3579999999987432211 111123568999999999976433222 222222
Q ss_pred -------cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1241 -------QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1241 -------ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
...+.++||||- .|. .+|.+|++.........
T Consensus 1075 ~i~~~~~~~~riI~lSATl--~N~------------------~dla~WL~~~~~~~~~~--------------------- 1113 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSL--SNA------------------KDVAHWLGCSATSTFNF--------------------- 1113 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCB--TTH------------------HHHHHHHTCCSTTEEEC---------------------
T ss_pred HHHhhcCCCceEEEEeCCC--CCH------------------HHHHHHhCCCCCCeEEe---------------------
Confidence 123558899994 233 34555554311000000
Q ss_pred HhhhhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhh
Q 000047 1314 VLRPFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEE 1392 (2693)
Q Consensus 1314 VLrPFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EE 1392 (2693)
....-|-..+ ++...........+..
T Consensus 1114 -------------~~~~RPvpL~~~i~~~~~~~~~~~~~~---------------------------------------- 1140 (1724)
T 4f92_B 1114 -------------HPNVRPVPLELHIQGFNISHTQTRLLS---------------------------------------- 1140 (1724)
T ss_dssp -------------CGGGCSSCEEEEEEEECCCSHHHHHHT----------------------------------------
T ss_pred -------------CCCCCCCCeEEEEEeccCCCchhhhhh----------------------------------------
Confidence 0001121111 1111111111000000
Q ss_pred hhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh-------------------------
Q 000047 1393 VDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT------------------------- 1447 (2693)
Q Consensus 1393 id~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~------------------------- 1447 (2693)
....+...+.+ ...++.+||||..+..+..+...|.
T Consensus 1141 ------------------~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~ 1201 (1724)
T 4f92_B 1141 ------------------MAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLE 1201 (1724)
T ss_dssp ------------------THHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHT
T ss_pred ------------------hcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHh
Confidence 00001111111 1234556666665554443332221
Q ss_pred ---------hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----ec------CCC
Q 000047 1448 ---------FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----FD------TDW 1508 (2693)
Q Consensus 1448 ---------~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----yD------ppW 1508 (2693)
.....+..+||+++.++|..+.+.|.++... +|++|..++.||||++...||. || .+.
T Consensus 1202 ~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~---VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~ 1278 (1724)
T 4f92_B 1202 KLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ---VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDY 1278 (1724)
T ss_dssp TCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC---EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEEC
T ss_pred hcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe---EEEEChHHHcCCCCCccEEEEecCccccCcccccCCC
Confidence 0123477899999999999999999988765 7999999999999997666652 33 246
Q ss_pred CccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1509 NPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1509 NP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
++..|.|++|||+|.|....-.++.|+...
T Consensus 1279 s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1279 PIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred CHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 788999999999999987776676666544
No 61
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.68 E-value=2.8e-16 Score=170.68 Aligned_cols=124 Identities=20% Similarity=0.308 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
|++.|.+++..+ .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+++... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 999999999875 468999999999999999999999999999999999999999999999987665 789999999
Q ss_pred cccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1491 VGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+|+|++.+++||+||++|++..|.||+||++|.|+... +|.|++....+
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 99999999999999999999999999999999997654 45566766543
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.68 E-value=1.7e-16 Score=206.29 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=170.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
.+.+.|+..+||+|||.+++..+. +. ...+||++|+..+ .|+.+.+.+.+. ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 466789999999999977654433 22 2358999999766 667777766553 33444445321
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc-hHHHHHHhhcccc---cccccccCCCCCHHHHHH
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC-KLNADLKHYQSSH---RLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~~---RLLLTGTPLQNnLeELwS 1262 (2693)
...+.+|+|+|+++|... ..+...++++|||||||.+--... .+...+..+...+ .+++|||+-..
T Consensus 294 ~~~~~~IlV~TPGrLl~~---~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~------- 363 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLAD---GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS------- 363 (666)
T ss_dssp ECCCCSEEEEEHHHHHHT---TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC-------
T ss_pred ccCCCCEEEECcHHHHhC---CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc-------
Confidence 246789999999999652 345666799999999987632211 1333334443322 46779998430
Q ss_pred HhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeeecc
Q 000047 1263 LLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCE 1342 (2693)
Q Consensus 1263 LLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ce 1342 (2693)
+ .. ..|...+..+...
T Consensus 364 ---------i----------~~---------------------------------------------~~p~i~~v~~~~~ 379 (666)
T 3o8b_A 364 ---------V----------TV---------------------------------------------PHPNIEEVALSNT 379 (666)
T ss_dssp ---------C----------CC---------------------------------------------CCTTEEEEECBSC
T ss_pred ---------c----------cc---------------------------------------------CCcceEEEeeccc
Confidence 0 00 0000000000000
Q ss_pred ccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHh
Q 000047 1343 ASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKL 1422 (2693)
Q Consensus 1343 LSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kL 1422 (2693)
.. -.++ .. .+ . +.
T Consensus 380 ---------------------~~----------------i~~~--------~~---------~~----~-------l~-- 392 (666)
T 3o8b_A 380 ---------------------GE----------------IPFY--------GK---------AI----P-------IE-- 392 (666)
T ss_dssp ---------------------SS----------------EEET--------TE---------EE----C-------GG--
T ss_pred ---------------------ch----------------hHHH--------Hh---------hh----h-------hh--
Confidence 00 0000 00 00 0 00
Q ss_pred hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEE
Q 000047 1423 KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVI 1502 (2693)
Q Consensus 1423 katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVI 1502 (2693)
...+.++|||++....++.|.++|...|+.+..|||+++.++ |.++.. .+||+|+++++|||+. +++||
T Consensus 393 ~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI 461 (666)
T 3o8b_A 393 AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVI 461 (666)
T ss_dssp GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEE
T ss_pred hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEE
Confidence 114779999999999999999999999999999999999765 333332 4899999999999986 99998
Q ss_pred ----------Eec-----------CCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1503 ----------IFD-----------TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1503 ----------iyD-----------ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
+|| .|.++..|+||+||++| |..- . |.|++....+
T Consensus 462 ~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 462 DCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp ECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred ecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 677 77788999999999999 6542 2 7788776543
No 63
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=178.10 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=107.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.++|.. .+.++||||++...++.|.++|...|+.+..++|.++..+|.++++.|+++... +||+|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45688888888864 356899999999999999999999999999999999999999999999987665 799999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
++++|||++.+++||+||++||+..|+||+||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999987644 4455543
No 64
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.66 E-value=2.2e-14 Score=187.64 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+++..|...|..+...+.++||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 4577777777777777889999999999999999999999999999999999999999999999877655 8999999
Q ss_pred cccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1489 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
+++|||++.+++||+||. +|++..|+|++||++|.|.. .++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCCC
Confidence 999999999999999998 89999999999999998633 4555666554
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.66 E-value=2e-15 Score=197.40 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=94.3
Q ss_pred eEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEecC-
Q 000047 1428 RVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDT- 1506 (2693)
Q Consensus 1428 KVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDp- 1506 (2693)
..||||.....++.+.+.|...++.+..+||+++.++|.++++.|+.++..+ -+||+|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~-~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPC-KILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSC-CEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCe-EEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 4478898899999999999999999999999999999999999999833222 279999999999999 9999999999
Q ss_pred -------------CCCccchhhhhhhhcccCCc-ccEEEEEEEeC
Q 000047 1507 -------------DWNPQVDLQAQARAHRIGQK-RDVLVLRFETV 1537 (2693)
Q Consensus 1507 -------------pWNP~~diQAIGRAHRIGQk-KeV~VyRLIT~ 1537 (2693)
+++...+.|+.||++|.|.. ....||.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 34667766543
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.65 E-value=2.6e-16 Score=181.31 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=110.6
Q ss_pred CccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHH
Q 000047 1084 TCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFW 1162 (2693)
Q Consensus 1084 ~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKw 1162 (2693)
....+..|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||.++|.+|
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 333457999999999987654 4569999999999999998887653 4579999998 6778999999995
Q ss_pred CCCCc-EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhc
Q 000047 1163 APRIH-KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQ 1241 (2693)
Q Consensus 1163 aPsLk-VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lk 1241 (2693)
++. +..+.|... ...+|+|+||+.+..... .+ ...|++|||||||++.+.. +.+.+..+.
T Consensus 157 --~~~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~--~~-~~~~~llIiDEaH~l~~~~--~~~i~~~~~ 217 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAE--KL-GNRFMLLIFDEVHHLPAES--YVQIAQMSI 217 (237)
T ss_dssp --CGGGEEEESSSCB------------CCCSEEEEEHHHHHHTHH--HH-TTTCSEEEEECSSCCCTTT--HHHHHHTCC
T ss_pred --CCCeEEEEeCCCC------------CcCCEEEEeHHHHHhhHH--Hh-cccCCEEEEECCccCCChH--HHHHHHhcc
Confidence 466 777777532 256899999999976432 22 2469999999999997654 334556678
Q ss_pred ccccccccccCCCCCH
Q 000047 1242 SSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnL 1257 (2693)
..++|+|||||.+++-
T Consensus 218 ~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 218 APFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEEEESCC----
T ss_pred CCEEEEEecCCCCCCC
Confidence 8899999999987654
No 67
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=8.3e-16 Score=168.45 Aligned_cols=123 Identities=18% Similarity=0.260 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccc
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAG 1489 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAG 1489 (2693)
.|+.+|.++|..+ .+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+++... +||+|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3899999988764 467999999999999999999999999999999999999999999999987665 79999999
Q ss_pred ccccCccccCEEEEecCC------CCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1490 GVGVNLQAADTVIIFDTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1490 GeGLNLQaADtVIiyDpp------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++|||++.+++||+||++ |++..|+||+||++|.|+. -.+|.|++...
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678899999999999954 45677777665
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.65 E-value=4e-15 Score=210.31 Aligned_cols=329 Identities=16% Similarity=0.131 Sum_probs=195.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC--------CCCCEEEEecCch-HHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN--------DRGPFLVVVPSSV-LPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~--------~~gP~LIVVPtSL-L~QW~eEf 1159 (2693)
.+|.+.|.+++..+ ++.+.|.+++.+||+|||++|...|...+.... ..+.+|+|+|..- ..+-.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 47899999988754 457889999999999999998766655543321 2345899999754 45566777
Q ss_pred HHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc--ccccCccEEEEccccccccccchHH-
Q 000047 1160 NFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK--LSKIQWHYIIIDEGHRIKNASCKLN- 1234 (2693)
Q Consensus 1160 eKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~--L~kikWd~VIIDEAHRIKN~sSKls- 1234 (2693)
.+.+. +++|..+.|+..... ......+|+|||++.+.....+.. -......+|||||+|.+.+...-..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~------~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK------EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC------TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc------cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHH
Confidence 65443 567888888643211 112468999999998743221111 1123468999999998865321111
Q ss_pred ----HHHH---hh-cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHH
Q 000047 1235 ----ADLK---HY-QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLL 1306 (2693)
Q Consensus 1235 ----raLk---~L-ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~ll 1306 (2693)
+.++ .. ...++|+||||- .|..| |.+|+... ...
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl--~N~~d------------------vA~wL~~~--------~~~---------- 270 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATL--PNYED------------------VATFLRVD--------PAK---------- 270 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSC--TTHHH------------------HHHHTTCC--------HHH----------
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeccc--CCHHH------------------HHHHhCCC--------CCC----------
Confidence 1111 11 223578999994 23444 44444320 000
Q ss_pred HHHHHHHHhhhhhhhhhHhHHhhcCcccee-EeeeccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccc
Q 000047 1307 IINRLHQVLRPFVLRRLKHKVENELPEKIE-RLVRCEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYL 1385 (2693)
Q Consensus 1307 iI~RLhkVLrPFLLRRtKkDVekeLP~KiE-~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL 1385 (2693)
. + |.+. ....|-..+ +++.+.-....+ ....+.
T Consensus 271 ------~-~--~~~~------~~~RPvpL~~~~~~~~~~~~~~-----------------------~~~~~~-------- 304 (1724)
T 4f92_B 271 ------G-L--FYFD------NSFRPVPLEQTYVGITEKKAIK-----------------------RFQIMN-------- 304 (1724)
T ss_dssp ------H-E--EECC------GGGCSSCEEEECCEECCCCHHH-----------------------HHHHHH--------
T ss_pred ------C-e--EEEC------CCCccCccEEEEeccCCcchhh-----------------------hhHHHH--------
Confidence 0 0 0000 001121111 111111000000 000000
Q ss_pred cchhhhhhhccCCCCCCChhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh-----------------
Q 000047 1386 SQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----------------- 1448 (2693)
Q Consensus 1386 ~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----------------- 1448 (2693)
..+.+.+.+ ...++.+||||..+..++.+..+|..
T Consensus 305 ---------------------------~~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~ 356 (1724)
T 4f92_B 305 ---------------------------EIVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA 356 (1724)
T ss_dssp ---------------------------HHHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTT
T ss_pred ---------------------------HHHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchh
Confidence 001111111 12356788888776544433333321
Q ss_pred --------------------cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE----e
Q 000047 1449 --------------------KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII----F 1504 (2693)
Q Consensus 1449 --------------------rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi----y 1504 (2693)
..+.+...||+++.++|..+.+.|+++.-. +|++|..++.||||++.+.||. |
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~---vlvaTsTLa~GVNlPa~~vVI~~~~~~ 433 (1724)
T 4f92_B 357 STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQ---VLVSTATLAWGVNLPAHTVIIKGTQVY 433 (1724)
T ss_dssp CSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCC---EEEECHHHHHHSCCCBSEEEEECCEEE
T ss_pred HHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCe---EEEEcchhHhhCCCCCceEEEeCCEEe
Confidence 123467889999999999999999988766 7999999999999998887773 6
Q ss_pred cCC------CCccchhhhhhhhcccCCcccEEEEEEEeCCCHH
Q 000047 1505 DTD------WNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVE 1541 (2693)
Q Consensus 1505 Dpp------WNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIE 1541 (2693)
|+. .++..+.|++|||+|.|....-.++.++..+..+
T Consensus 434 ~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 434 SPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp ETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred cCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 654 4688999999999999987666666666665443
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.64 E-value=1.5e-13 Score=177.78 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=99.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+.|......+.+|||||......+.|...|...|+++..|+|.....+|.-+...|..+ . ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e---EEEEcc
Confidence 34699999999988777789999999999999999999999999999999985544444444556433 3 899999
Q ss_pred ccccccCcc--------ccCEEEEecCCCCccchhhhhhhhcccCCcccE
Q 000047 1488 AGGVGVNLQ--------AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDV 1529 (2693)
Q Consensus 1488 AGGeGLNLQ--------aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV 1529 (2693)
++|+|+|+. ...+||+||.|-++..|.|++||++|.|..-..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999997 567999999999999999999999999976543
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=1.5e-15 Score=170.28 Aligned_cols=164 Identities=12% Similarity=0.167 Sum_probs=117.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|++||.+++.+++. +.++|++++||+|||++++..+...+........+|||||. .++.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998875 67899999999999999887777665433334469999998 66688999999986 46
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-c--chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-S--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-s--SKlsraLk~Lk- 1241 (2693)
+++..+.|........ ..+.....+|+|+|++.+........+...++++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 7888888865433221 2223356799999999997655444455667899999999999653 1 12222333333
Q ss_pred ccccccccccCCCCCHHHH
Q 000047 1242 SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeEL 1260 (2693)
..++++|||||- +.+.++
T Consensus 190 ~~~~i~~SAT~~-~~~~~~ 207 (220)
T 1t6n_A 190 EKQVMMFSATLS-KEIRPV 207 (220)
T ss_dssp SSEEEEEESCCC-TTTHHH
T ss_pred cCeEEEEEeecC-HHHHHH
Confidence 456799999994 334443
No 71
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.62 E-value=2.7e-15 Score=170.14 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=114.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.+|.+++.. ..+.++||||.....++.|..+|...|+.+..+||+++..+|..+++.|+.+... +||+|+
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEECT
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEecC
Confidence 35699999999974 3478999999999999999999999999999999999999999999999987665 799999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
++++|||++.+++||+||++|++..|.||+||++|.|+.. .+|.|++.. |...+...+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~ 148 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALER 148 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHH
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999764 455566654 3344444433
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.62 E-value=1.5e-15 Score=167.97 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=115.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecC-chHHHHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPS-SVLPGWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPt-SLL~QW~eEfeKwaP 1164 (2693)
..|++||.+++.++.. +.++|+..+||+|||++++..+...+... .....+|||||. .++.||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4799999999998775 67899999999999998776665544321 233468999998 667899999999998
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
.+++..+.|......... ....+.+|+|+|++.+........+...+|++|||||||++.+.. ..+...+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~ 174 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKE---ALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174 (207)
T ss_dssp TSCEEEECSSSCSHHHHH---HHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT
T ss_pred cceEEEEECCCChHHHHH---HhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCc
Confidence 888888887654332111 112468999999999876554444555678999999999986543 23334444443
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..+.++||||+
T Consensus 175 ~~~~i~~SAT~ 185 (207)
T 2gxq_A 175 SRQTLLFSATL 185 (207)
T ss_dssp TSEEEEECSSC
T ss_pred cCeEEEEEEec
Confidence 34579999998
No 73
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.41 E-value=4.4e-17 Score=177.97 Aligned_cols=119 Identities=19% Similarity=0.304 Sum_probs=107.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.++|.. ..+.++||||+....++.|.++|...|+.+..++|+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888875 3467999999999999999999999999999999999999999999999877654 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+++|||++.+++||+||++|++..|+||+||++|.|+...+.++
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 99999999999999999999999999999999999987665443
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.59 E-value=8.6e-15 Score=166.24 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHC---CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWA---PR 1165 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwa---Ps 1165 (2693)
.|++||.+++.++.. +.+.|+..+||+|||++++..+...+........+|||||. .+..||.+++.+|. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998764 77899999999999998765554443333334569999998 66789999999986 36
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc---chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS---CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s---SKlsraLk~Lk- 1241 (2693)
+++..+.|......... ...+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~~----~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKT----RLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHHH----HTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHHH----hccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 78888888654432211 12468999999999977554444555678999999999996543 33334445554
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..++++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45579999996
No 75
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.58 E-value=5e-15 Score=166.48 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--- 1164 (2693)
..+++||.+++.++.. +.++|+..+||+|||++++..+...+........+|||||+ .+..||.+++.+++.
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4689999999998876 68899999999999998776666554433334569999998 556889999988864
Q ss_pred ---CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHh
Q 000047 1165 ---RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKH 1239 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~ 1239 (2693)
.+.+..+.|........ .......+|+|+|++.+........+...++++|||||||++.+.. ..+...+..
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 177 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 177 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHT
T ss_pred cccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHh
Confidence 46677777765443211 1223578999999999976554444555678999999999997543 234444455
Q ss_pred hc-ccccccccccCCCCCHHHH
Q 000047 1240 YQ-SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1240 Lk-a~~RLLLTGTPLQNnLeEL 1260 (2693)
+. ..++++||||+ .+.+.++
T Consensus 178 ~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 178 MPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp SCTTCEEEEEESCC-CGGGHHH
T ss_pred CCcccEEEEEecCC-CHHHHHH
Confidence 54 34579999997 4444443
No 76
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=166.40 Aligned_cols=135 Identities=21% Similarity=0.240 Sum_probs=93.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecC-chHHH-HHHHHHHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPS-SVLPG-WESEINFW 1162 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPt-SLL~Q-W~eEfeKw 1162 (2693)
+..|++||.+++.+++. +.++|+.++||+|||++++.++..++... ...+++|||||. .++.| |.+++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 35899999999998874 67899999999999999998887766542 224569999998 55578 99999998
Q ss_pred CC-CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCc------ccccCccEEEEccccccccc
Q 000047 1163 AP-RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPK------LSKIQWHYIIIDEGHRIKNA 1229 (2693)
Q Consensus 1163 aP-sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~------L~kikWd~VIIDEAHRIKN~ 1229 (2693)
.. .+.+..+.|......... ......+|+|+||+.+........ +...+|++|||||||++...
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HTTTSCEEECCC---CCCCHH---HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCceEEEEeCCcccchhHH---hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 75 467777777543221110 111358999999999976443321 34467899999999999643
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=8.4e-15 Score=162.13 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=114.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC---
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--- 1164 (2693)
..|++||.+++..+.. +.++|+..+||+|||++++..+...+........+|||||. .++.||.+++.+++.
T Consensus 24 ~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998764 67899999999999998876665544333334469999998 556889999988864
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
.+.+..+.|......... ......+|+|+|++.+........+...++++|||||||++.... ..+...+..+.
T Consensus 100 ~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~ 176 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIM---RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176 (206)
T ss_dssp SCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT
T ss_pred CceEEEEeCCccHHHHHH---hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc
Confidence 677888888765443322 123578999999999976555444555678999999999986633 22233334443
Q ss_pred ccccccccccC
Q 000047 1242 SSHRLLLTGTP 1252 (2693)
Q Consensus 1242 a~~RLLLTGTP 1252 (2693)
..++++||||+
T Consensus 177 ~~~~l~~SAT~ 187 (206)
T 1vec_A 177 NRQILLYSATF 187 (206)
T ss_dssp TCEEEEEESCC
T ss_pred cceEEEEEeeC
Confidence 45679999998
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.57 E-value=4.1e-13 Score=175.62 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=110.6
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
.+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|.++++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3567777777777777789999999999999999999999999999999999999999999999877655 8999999
Q ss_pred cccccCccccCEEEEecC-----CCCccchhhhhhhhcccCCcccEEEEEEEeCCCH
Q 000047 1489 GGVGVNLQAADTVIIFDT-----DWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTV 1540 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDp-----pWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSI 1540 (2693)
+++|||++.+++||+||. ++++..|+|++||++|.+ .-.++.|++..+.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 999999999999999998 899999999999999973 3456666766543
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=162.82 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=112.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc----CCCCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK----NDRGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k----~~~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+... .....+|||||. .+..||.+++.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4789999999998874 78899999999999999877665544321 123458999998 66688999999998
Q ss_pred CC--CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1164 PR--IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1164 Ps--LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
.. +.+..+.|......... ...+.+|+|+|++.+....... .+...+|++|||||||++.+.. ..+...+.
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 197 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAE----RINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE 197 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHH----HHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCHHHHHH----hCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHH
Confidence 64 67778888654432221 1247899999999997644322 3445678999999999997643 34444455
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ..++++||||+
T Consensus 198 ~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 198 NLPKKRQTLLFSATQ 212 (236)
T ss_dssp TSCTTSEEEEEESSC
T ss_pred hCCCCCeEEEEEeeC
Confidence 554 34579999998
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=2.8e-14 Score=163.71 Aligned_cols=157 Identities=16% Similarity=0.221 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---------CCCCEEEEecC-chHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---------DRGPFLVVVPS-SVLPGWESE 1158 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---------~~gP~LIVVPt-SLL~QW~eE 1158 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+.... ....+|||||. .+..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998875 678999999999999998877665554322 12468999998 566899999
Q ss_pred HHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHH
Q 000047 1159 INFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLN 1234 (2693)
Q Consensus 1159 feKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKls 1234 (2693)
+.+|+. .+.+..+.|......... ......+|+|+|++.+........+....+++|||||||++.+.. ..+.
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIR---EVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHH---HHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHH---HhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 999865 366677777654332221 123578999999999987655444555678999999999986543 3344
Q ss_pred HHHHhhc-----ccccccccccC
Q 000047 1235 ADLKHYQ-----SSHRLLLTGTP 1252 (2693)
Q Consensus 1235 raLk~Lk-----a~~RLLLTGTP 1252 (2693)
..+..+. ...+++||||+
T Consensus 197 ~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 197 KIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHhhccCCCCCCcEEEEEEEeC
Confidence 4444322 33579999998
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.54 E-value=2.2e-14 Score=161.04 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+........+|||||. .+..||.+++.+++. +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 3799999999998764 67899999999999998655554444333344569999998 556889999999875 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk-a 1242 (2693)
+.+..+.|........ ......+|+|+|++.+........+...++++|||||||++.+.. ..+...+..+. .
T Consensus 111 ~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~ 186 (224)
T 1qde_A 111 IKVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 186 (224)
T ss_dssp CCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCcc
Confidence 6777777765433221 112348999999999876554445555678999999999986543 22334444443 3
Q ss_pred cccccccccCC
Q 000047 1243 SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 ~~RLLLTGTPL 1253 (2693)
.++++||||+-
T Consensus 187 ~~~i~lSAT~~ 197 (224)
T 1qde_A 187 TQVVLLSATMP 197 (224)
T ss_dssp CEEEEEESSCC
T ss_pred CeEEEEEeecC
Confidence 45789999983
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=164.93 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=115.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++..++. +.+.|+..+||+|||++++..+...+........+|||||. .+..||.++|.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999998774 68899999999999999877776655554444569999998 556889999998865 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEcccccccccc--chHHHHHHhhc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQ- 1241 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lk- 1241 (2693)
+.+..+.|......... ....+.+|+|+|++.+...... ..+....+++|||||||++.+.. ..+...+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 216 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSL---ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216 (249)
T ss_dssp CCEEEECTTSCHHHHHH---HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS
T ss_pred eeEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC
Confidence 67777777654332221 1235789999999999764432 23445578999999999987643 23344444443
Q ss_pred ccccccccccCC
Q 000047 1242 SSHRLLLTGTPL 1253 (2693)
Q Consensus 1242 a~~RLLLTGTPL 1253 (2693)
..++++||||+-
T Consensus 217 ~~~~l~~SAT~~ 228 (249)
T 3ber_A 217 DRKTFLFSATMT 228 (249)
T ss_dssp SSEEEEEESSCC
T ss_pred CCeEEEEeccCC
Confidence 456799999983
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.54 E-value=2.7e-14 Score=170.85 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=109.0
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+++|.+++.... +.++||||.....++.|...|...|+.+..|||.++..+|..+++.|+.+..+ +||+|+
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 3569999999998654 78999999999999999999999999999999999999999999999988765 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQT 1539 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gS 1539 (2693)
++++|||++.+++||+||++|++..|.||+||++|.|+. -.+|.|++...
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~e 136 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPRE 136 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSST
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChHH
Confidence 999999999999999999999999999999999999976 45566666553
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.52 E-value=2e-14 Score=164.26 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=110.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
..|++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+ .+..||.+++.+++. .
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 3699999999998774 67899999999999998776666554333344569999998 566889999999975 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhc-c
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQ-S 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lk-a 1242 (2693)
+.+..+.|........ ..+.....+|+|+|++.+........+....+++|||||||++... ...+...+..+. .
T Consensus 127 ~~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 204 (237)
T 3bor_A 127 ATCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTS 204 (237)
T ss_dssp CCEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred ceEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCC
Confidence 5666677655433221 1233345899999999987655444455567899999999998543 334455555554 3
Q ss_pred cccccccccCC
Q 000047 1243 SHRLLLTGTPL 1253 (2693)
Q Consensus 1243 ~~RLLLTGTPL 1253 (2693)
...++||||+-
T Consensus 205 ~~~i~~SAT~~ 215 (237)
T 3bor_A 205 IQVVLLSATMP 215 (237)
T ss_dssp CEEEEECSSCC
T ss_pred CeEEEEEEecC
Confidence 45689999983
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=154.82 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=107.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCc-hHHHHHHHHHHHCCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSS-VLPGWESEINFWAPR- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtS-LL~QW~eEfeKwaPs- 1165 (2693)
..+++||.+++..+.. +.+.|+..+||+|||++++..+...+.... ....+|||||.. +..||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3699999999988765 678999999999999998766655554322 233589999985 568899999999763
Q ss_pred -CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC--cccccCccEEEEcccccccccc-----chHHHHH
Q 000047 1166 -IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP--KLSKIQWHYIIIDEGHRIKNAS-----CKLNADL 1237 (2693)
Q Consensus 1166 -LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~--~L~kikWd~VIIDEAHRIKN~s-----SKlsraL 1237 (2693)
+.+..+.|....... .......+++|+|+|++.+....... .+...++++|||||||++.... ..+...+
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~ 203 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKK--FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 203 (245)
T ss_dssp CCCEECCCHHHHHHTT--TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHH
T ss_pred CceEEEEecCccHHHH--hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHH
Confidence 445444443222111 11223467899999999997644322 3445578999999999996532 2222333
Q ss_pred Hhh--cccccccccccC
Q 000047 1238 KHY--QSSHRLLLTGTP 1252 (2693)
Q Consensus 1238 k~L--ka~~RLLLTGTP 1252 (2693)
..+ ...++++||||.
T Consensus 204 ~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 204 LACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHCCCTTCEEEEEESSC
T ss_pred HhcCCCCcEEEEEeccC
Confidence 333 234669999998
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=153.76 Aligned_cols=157 Identities=14% Similarity=0.215 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc------CCCCCEEEEecCc-hHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK------NDRGPFLVVVPSS-VLPGWESEINF 1161 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k------~~~gP~LIVVPtS-LL~QW~eEfeK 1161 (2693)
.++++||.+++..+.. +.+.|+..+||+|||+.++..+...+... .....+|||||+. +..||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 4799999999988764 78899999999999998876655544321 1334589999985 55889999999
Q ss_pred HC-CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1162 WA-PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1162 wa-PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. ..+.+..+.|........ .....+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 193 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILL 193 (228)
T ss_dssp HCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHH
Confidence 85 467777777765433211 1123568999999999977554445555678999999999987643 23344444
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ....++||||.
T Consensus 194 ~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 194 DVRPDRQTVMTSATW 208 (228)
T ss_dssp HSCSSCEEEEEESCC
T ss_pred hCCcCCeEEEEEeeC
Confidence 554 34568899996
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.39 E-value=1e-12 Score=150.31 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=110.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----CCCCCEEEEecCc-hHHHHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----NDRGPFLVVVPSS-VLPGWESEINFW 1162 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----~~~gP~LIVVPtS-LL~QW~eEfeKw 1162 (2693)
..+++||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. +..||.+++.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 3689999999988775 78899999999999999877666555432 2234589999985 557898888887
Q ss_pred CC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1163 AP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1163 aP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
+. ++.+..++|......... ....+.+|+|+|++.+........+...++++|||||||++.+.. ..+...+.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~ 202 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIR---DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 202 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCceEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHH
Confidence 53 567777777654332221 112468999999999976554444555678999999999987643 22333333
Q ss_pred hhc-ccccccccccC
Q 000047 1239 HYQ-SSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTP 1252 (2693)
.+. ....+++|||.
T Consensus 203 ~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 203 QIRPDRQTLMWSATW 217 (242)
T ss_dssp TSCSSCEEEEEESCC
T ss_pred hCCccceEEEEEeec
Confidence 443 34568999996
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.39 E-value=3.4e-11 Score=154.11 Aligned_cols=92 Identities=11% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeeccccc
Q 000047 1413 EMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGV 1491 (2693)
Q Consensus 1413 elLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGe 1491 (2693)
..+.+.|.++ ...+.++|||+.....++.+.+.|.. +. +.+.|.. .+|.+++++|+.+. . ..|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-Y-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-C-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-e-EEEEEecCceec
Confidence 4455555554 34567999999999999999888864 33 3455554 47999999998743 2 233347899999
Q ss_pred ccCccc----cCEEEEecCCCCcc
Q 000047 1492 GVNLQA----ADTVIIFDTDWNPQ 1511 (2693)
Q Consensus 1492 GLNLQa----ADtVIiyDppWNP~ 1511 (2693)
|||+.+ +..||+++.|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999997 89999999997444
No 89
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=151.53 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=110.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC----CCCCEEEEecC-chHHHHHHHHHHHC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN----DRGPFLVVVPS-SVLPGWESEINFWA 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~----~~gP~LIVVPt-SLL~QW~eEfeKwa 1163 (2693)
..|+++|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+ .|..||.+++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3699999999988776 678999999999999998776665554321 23458999998 55688999999987
Q ss_pred C--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCC-cccccCccEEEEcccccccccc--chHHHHHH
Q 000047 1164 P--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRP-KLSKIQWHYIIIDEGHRIKNAS--CKLNADLK 1238 (2693)
Q Consensus 1164 P--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~-~L~kikWd~VIIDEAHRIKN~s--SKlsraLk 1238 (2693)
. ...+..+.|......... ....+.+|+|+|++.+....... .+...++++|||||||++.... ..+...+.
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~ 227 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQ---KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIK 227 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHH---HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHH
Confidence 5 355666666554332221 11235899999999986543222 2334567999999999987643 23334444
Q ss_pred hhc-ccccccccccCC
Q 000047 1239 HYQ-SSHRLLLTGTPL 1253 (2693)
Q Consensus 1239 ~Lk-a~~RLLLTGTPL 1253 (2693)
.+. ....++||||+-
T Consensus 228 ~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 228 LLPTRRQTMLFSATQT 243 (262)
T ss_dssp HSCSSSEEEEECSSCC
T ss_pred hCCCCCeEEEEEecCC
Confidence 453 345699999983
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.23 E-value=3.4e-10 Score=149.32 Aligned_cols=150 Identities=21% Similarity=0.171 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHC
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWA 1163 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwa 1163 (2693)
|...++-|..|+-.|+. +. |....||.|||++++..++..... ...++||+|+..|. .|...|.+|+
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999876653 33 888999999999875544322221 22489999998873 3777777776
Q ss_pred CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHH-----hcc--CCCccccc---CccEEEEccccccccccchH
Q 000047 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLM-----NKH--DRPKLSKI---QWHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1164 PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Li-----k~~--Dr~~L~ki---kWd~VIIDEAHRIKN~sSKl 1233 (2693)
++.+.++.|......+.. ....+|++.|...|. ... ....+... ...++||||+|+|.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~~-----ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe--- 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRK-----AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE--- 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHHH-----HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS---
T ss_pred -CCeEEEEeCCCCHHHHHH-----HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC---
Confidence 577777666543221111 125799999988872 211 11123333 67899999999874221
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhh
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
+..-|++|| |.... ..+|..++
T Consensus 219 --------artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 219 --------ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp --------TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred --------CCCCeeeeC-CCccc-hHHHHHHH
Confidence 223489999 87766 44444433
No 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=144.87 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=105.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa---P 1164 (2693)
..++++|.+++..++. ..+.+.|+...||+|||+.++..+...+........+|||||+.. ..|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 4789999999987653 123788999999999999876555544433333335899999855 477888887765 5
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCC-CcccccCccEEEEccccccccccc---hHHHHHHhh
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDR-PKLSKIQWHYIIIDEGHRIKNASC---KLNADLKHY 1240 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr-~~L~kikWd~VIIDEAHRIKN~sS---KlsraLk~L 1240 (2693)
.+.+..+.|...... ......+|+|+|++.|...... ..+...++.+|||||||+|.+... .....+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhh------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 677777777543211 1135679999999999765533 334445789999999999865221 122222233
Q ss_pred c-ccccccccccC
Q 000047 1241 Q-SSHRLLLTGTP 1252 (2693)
Q Consensus 1241 k-a~~RLLLTGTP 1252 (2693)
. ....+++|||+
T Consensus 265 ~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 265 PRNCQMLLFSATF 277 (300)
T ss_dssp CTTCEEEEEESCC
T ss_pred CCCCEEEEEeccC
Confidence 2 34568999998
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.17 E-value=5.1e-10 Score=143.51 Aligned_cols=134 Identities=22% Similarity=0.203 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaP--s 1165 (2693)
.++||+|.+.+..+...+..+.++|+...||+|||+.++..+.. ...++||++|+.. ..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 57999999999877777778889999999999999988766554 2356999999855 5789999987642 5
Q ss_pred CcEEEEcCChHH--------------------------------HHHHHH----------------hhhhcCCccEEEEc
Q 000047 1166 IHKIVYCGPPEE--------------------------------RRRLFK----------------EKIVHQKFNVLLTT 1197 (2693)
Q Consensus 1166 LkVIvy~Gs~~e--------------------------------Rk~l~k----------------e~i~~~kfdVVITT 1197 (2693)
+++++..|.... ...++. ........+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677776663211 000100 01112467999999
Q ss_pred HHHHHhccCCCccc-ccCccEEEEcccccccc
Q 000047 1198 YEYLMNKHDRPKLS-KIQWHYIIIDEGHRIKN 1228 (2693)
Q Consensus 1198 YE~Lik~~Dr~~L~-kikWd~VIIDEAHRIKN 1228 (2693)
|.+|.....+..+. .....+|||||||+|-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998643222222 23567899999999977
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.98 E-value=3.4e-08 Score=128.82 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=61.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa--Ps 1165 (2693)
.++||+|.+.+..+...+.++.++|+...||+|||+.++..+...+... ..++||++|+.. ..|+.+++.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 3679999999988877777899999999999999999887665554332 246899999855 577889987663 25
Q ss_pred CcEEEEcC
Q 000047 1166 IHKIVYCG 1173 (2693)
Q Consensus 1166 LkVIvy~G 1173 (2693)
+++++..|
T Consensus 80 ~~~~~l~g 87 (620)
T 4a15_A 80 IRAIPMQG 87 (620)
T ss_dssp CCEEECCC
T ss_pred eEEEEEEC
Confidence 66655544
No 94
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.65 E-value=9.6e-08 Score=109.42 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCC--CCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKND--RGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~--~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..+++||.+++..+.. +...++..++|+|||.+...++......... ...+|+++|...+ .+..+.+...+..
T Consensus 60 ~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 60 LPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp SGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3588999999988765 7788999999999997665555443332222 2247889998665 4566666655431
Q ss_pred ---CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccc-ccccch--HHHH-HH
Q 000047 1166 ---IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRI-KNASCK--LNAD-LK 1238 (2693)
Q Consensus 1166 ---LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRI-KN~sSK--lsra-Lk 1238 (2693)
..+. |.- + +.........+|+|+|++.+.+.... ...++++|||||||++ -+.... ..+. +.
T Consensus 136 ~~~~~~g-~~~----~---~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCG-YSV----R---FESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEE-EEE----T---TEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEE-Eee----c---hhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 1111 110 0 01111125678999999988765432 2356799999999984 222211 1122 22
Q ss_pred hhcccccccccccC
Q 000047 1239 HYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1239 ~Lka~~RLLLTGTP 1252 (2693)
.+.....+++|||+
T Consensus 205 ~~~~~~~il~SAT~ 218 (235)
T 3llm_A 205 AYPEVRIVLMSATI 218 (235)
T ss_dssp HCTTSEEEEEECSS
T ss_pred hCCCCeEEEEecCC
Confidence 23345679999997
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.26 E-value=0.0015 Score=85.73 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHC
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWA 1163 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwa 1163 (2693)
+.+..|-+.|+++|..++. ...-.||....|+|||.+.+.+|.+++..+ .++||++|+.. +.+..+.+....
T Consensus 185 ~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 3446799999999998775 223468889999999999999999888643 46999999866 455666565443
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.94 E-value=0.0046 Score=78.01 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
..|-+.|.+++..++.....+. ..+|....|+|||..+.+++.++...+. ..+++++|+.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKK 88 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHH
Confidence 4799999999998876555444 6788899999999999888888876543 45899999976543
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.83 E-value=0.0063 Score=79.78 Aligned_cols=150 Identities=21% Similarity=0.353 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +...++....|+|||.+...++.++... ...++||++|+... .+..+.+.+.. +.
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 4689999999987763 4456888999999999998888877642 34569999998765 44444454332 22
Q ss_pred EEEEcCChH-----------------------HHH-----------------HHHH------hhhhcCCccEEEEcHHHH
Q 000047 1168 KIVYCGPPE-----------------------ERR-----------------RLFK------EKIVHQKFNVLLTTYEYL 1201 (2693)
Q Consensus 1168 VIvy~Gs~~-----------------------eRk-----------------~l~k------e~i~~~kfdVVITTYE~L 1201 (2693)
++.+..... ... +.+. ........+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 221111000 000 0000 011124678999887665
Q ss_pred HhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1202 MNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1202 ik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 331 ~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC----GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cc----hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 32 34566789999999997765432 11222333567888888865
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.0042 Score=80.88 Aligned_cols=131 Identities=20% Similarity=0.135 Sum_probs=82.7
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCc
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLk 1167 (2693)
+..|-+.|.+++..+.. +...+|....|+|||.++.+++..+... ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 56799999999988763 5667889999999999888777766543 3568999999877665544321 11
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccccccc
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLL 1247 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLL 1247 (2693)
...+ .+++.. .. . .+ ....-....+++|||||+|.+-.. .+...+..+....+++
T Consensus 256 a~Ti-------h~ll~~----~~-~-------~~----~~~~~~~~~~dvlIIDEasml~~~--~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTV-------HRLLGY----GP-Q-------GF----RHNHLEPAPYDLLIVDEVSMMGDA--LMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEH-------HHHTTE----ET-T-------EE----SCSSSSCCSCSEEEECCGGGCCHH--HHHHHHTTSCTTCEEE
T ss_pred HHHH-------HHHHcC----Cc-c-------hh----hhhhcccccCCEEEEcCccCCCHH--HHHHHHHhCcCCCEEE
Confidence 1100 001000 00 0 01 111123347899999999987432 3334444556677899
Q ss_pred ccccCCC
Q 000047 1248 LTGTPLQ 1254 (2693)
Q Consensus 1248 LTGTPLQ 1254 (2693)
|.|-|-|
T Consensus 311 lvGD~~Q 317 (574)
T 3e1s_A 311 LVGDTDQ 317 (574)
T ss_dssp EEECTTS
T ss_pred EEecccc
Confidence 9999976
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.51 E-value=0.012 Score=79.35 Aligned_cols=149 Identities=21% Similarity=0.335 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +...++....|+|||.+...++.+++.. ...++||++|+.... +-.+.+.... +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 4689999999987753 3456888999999999998888887643 335699999987654 3444444322 22
Q ss_pred EEEEcCChH------------------------HHHHH-----------------HH------hhhhcCCccEEEEcHHH
Q 000047 1168 KIVYCGPPE------------------------ERRRL-----------------FK------EKIVHQKFNVLLTTYEY 1200 (2693)
Q Consensus 1168 VIvy~Gs~~------------------------eRk~l-----------------~k------e~i~~~kfdVVITTYE~ 1200 (2693)
++.+ |... ..+++ +. ........+||++|...
T Consensus 427 vvRl-g~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 VVRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp EEEC-CCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred eEee-cccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 2211 1110 00000 00 00112356889988776
Q ss_pred HHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1201 LMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1201 Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
+.. ..+....|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 506 ~~~----~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 506 AGD----PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GGC----TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred hCC----hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 542 23566789999999997764322 12233344567888888865
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.013 Score=79.25 Aligned_cols=149 Identities=17% Similarity=0.267 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLk 1167 (2693)
..|-+.|.+++..++. +.-.++....|+|||.+...++.+++... ..++||++|+... .+-.+.+.+.. +.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4688999999987753 34468889999999999988888877542 3469999998765 44555555442 22
Q ss_pred EEEEcCChH----------------------HHHH-----------------HHH------hhhhcCCccEEEEcHHHHH
Q 000047 1168 KIVYCGPPE----------------------ERRR-----------------LFK------EKIVHQKFNVLLTTYEYLM 1202 (2693)
Q Consensus 1168 VIvy~Gs~~----------------------eRk~-----------------l~k------e~i~~~kfdVVITTYE~Li 1202 (2693)
++.+..... .... .+. ........+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 222111000 0000 000 0111245689999887664
Q ss_pred hccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1203 NKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1203 k~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
. ..+.. .|++||||||..+.... ..+..+....+++|-|=|.|
T Consensus 511 ~----~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D----KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C----TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred h----HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 2 23444 89999999998764322 12223344567888888865
No 101
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.83 E-value=0.02 Score=75.03 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-CCCCCEEEEecCchHHHH-HHHHHHHCCCCcE-
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-NDRGPFLVVVPSSVLPGW-ESEINFWAPRIHK- 1168 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-~~~gP~LIVVPtSLL~QW-~eEfeKwaPsLkV- 1168 (2693)
-+.|..++..++. +...|+....|+|||.++..++..+.... .....+++++|+...... .+.+..++..+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 4779999976653 56778999999999988777776665432 223368999999776543 3333332110000
Q ss_pred -EEEcCChHHHHHHHHhhhhcCCccEEE-EcHH--HHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccc
Q 000047 1169 -IVYCGPPEERRRLFKEKIVHQKFNVLL-TTYE--YLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSH 1244 (2693)
Q Consensus 1169 -Ivy~Gs~~eRk~l~ke~i~~~kfdVVI-TTYE--~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~ 1244 (2693)
....+.. ......+-++ .+.. .+.. .......+++||||||+.+. ...+...+..+....
T Consensus 227 ~~~~~~~~----------~~~~Tih~ll~~~~~~~~~~~----~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~ 290 (608)
T 1w36_D 227 DEQKKRIP----------EDASTLHRLLGAQPGSQRLRH----HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHA 290 (608)
T ss_dssp SCCCCSCS----------CCCBTTTSCC---------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTC
T ss_pred HHHHhccc----------hhhhhhHhhhccCCCchHHHh----ccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCC
Confidence 0000000 0000001000 0000 0111 11122378999999999553 223345556667778
Q ss_pred cccccccCCCC
Q 000047 1245 RLLLTGTPLQN 1255 (2693)
Q Consensus 1245 RLLLTGTPLQN 1255 (2693)
+++|-|-|-|-
T Consensus 291 ~liLvGD~~QL 301 (608)
T 1w36_D 291 RVIFLGDRDQL 301 (608)
T ss_dssp EEEEEECTTSG
T ss_pred EEEEEcchhhc
Confidence 89999988654
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.41 E-value=0.073 Score=59.61 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.++.-.||.|||..++.++..+...+ ..++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 46788999999998887777665432 357888776
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.77 E-value=0.61 Score=58.32 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=87.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..|.|||+..+..+.. ....++.-.-+.|||..+.+++.+++... ....+++++|..-. ..+.+++..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 5799999998876631 34467777899999999888777755432 23458899997543 23445665543 3
Q ss_pred C-CcE-EEEcCChHHHHHHHHhhhh-cCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-h
Q 000047 1165 R-IHK-IVYCGPPEERRRLFKEKIV-HQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-Y 1240 (2693)
Q Consensus 1165 s-LkV-Ivy~Gs~~eRk~l~ke~i~-~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-L 1240 (2693)
. ++. +..... ..+. ..+..+.+.+- +...+.....+++|+||+|.+++. ..++.++.. +
T Consensus 237 ~ll~~~~~~~~~---------~~I~f~nGs~i~~lsa-------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~l 299 (385)
T 2o0j_A 237 DFLQPGIVEWNK---------GSIELDNGSSIGAYAS-------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVI 299 (385)
T ss_dssp TTTSCCEEEECS---------SEEEETTSCEEEEEEC-------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHH
T ss_pred HhhhhhhccCCc---------cEEEeCCCCEEEEEEC-------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHh
Confidence 2 111 100000 0010 11222222111 112345566899999999999863 234444432 3
Q ss_pred c--ccccccccccCCCCCHHHHHHHhhh
Q 000047 1241 Q--SSHRLLLTGTPLQNNLEELWALLNF 1266 (2693)
Q Consensus 1241 k--a~~RLLLTGTPLQNnLeELwSLLnF 1266 (2693)
. ...+++++.||-..+ .+|.+...
T Consensus 300 s~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 300 SSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred hcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 2 346788889996553 55555443
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.14 E-value=0.38 Score=62.81 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=83.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..|.|||...+..+. .....++.-.-|.|||..+.+++.+++.... ...++++.+..-. ..+...+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999877652 2445677778999999988777776665433 3358999997543 33445666554 3
Q ss_pred C-CcE-EEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh-hc
Q 000047 1165 R-IHK-IVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH-YQ 1241 (2693)
Q Consensus 1165 s-LkV-Ivy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~-Lk 1241 (2693)
. +.. ....... ......+..+.+.+- +...+.....+++||||+|.+++.. .++.++.. +.
T Consensus 237 ~~~~~~~~~~~~~--------~i~~~nGs~i~~~s~-------~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~ 300 (592)
T 3cpe_A 237 DFLQPGIVEWNKG--------SIELDNGSSIGAYAS-------SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVIS 300 (592)
T ss_dssp TTTSCCEEEECSS--------EEEETTSCEEEEEEC-------CHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHS
T ss_pred HhhccccccCCcc--------EEEecCCCEEEEEeC-------CCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhc
Confidence 2 110 0000000 000011222221110 1122344568999999999997742 45555543 32
Q ss_pred --ccccccccccCCCC
Q 000047 1242 --SSHRLLLTGTPLQN 1255 (2693)
Q Consensus 1242 --a~~RLLLTGTPLQN 1255 (2693)
...++++++||-..
T Consensus 301 ~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 301 SGRRSKIIITTTPNGL 316 (592)
T ss_dssp SSSCCEEEEEECCCTT
T ss_pred cCCCceEEEEeCCCCc
Confidence 24678899999544
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.57 E-value=0.19 Score=58.47 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=28.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
.+.-.++.-+||.|||..++.++..+...+ ..++|+.|.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEecc
Confidence 333346789999999999888887765432 3478887653
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=92.29 E-value=0.24 Score=64.51 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHH-HHHHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLP-GWESEINFW 1162 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~-QW~eEfeKw 1162 (2693)
.|-+.|.++|.. .....++-...|+|||.+.+.-+.+++...+ ....+|+|+++.... +..+.+.+.
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 688999999961 2344566677999999999999999987643 334689999986654 345555554
No 107
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.28 E-value=0.35 Score=58.55 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHhhcCC---CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1091 LREYQMSGLRWLVSLYNNQL---NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1091 LRPYQleGL~WLlsLy~n~l---nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
++|+|.+.+..+...+.++. ..+|..+.|+|||..+.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 67999999988888776654 2588899999999999988887754
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.18 E-value=0.64 Score=55.50 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=29.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~ 1156 (2693)
.+.+|..+.|+|||..+-+++..+... ..+++.|....+...+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~ 81 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMV 81 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHH
Confidence 467899999999999887777766543 34555555433333333
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.42 E-value=0.21 Score=58.70 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCC-CCCEEEEecCch
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKND-RGPFLVVVPSSV 1151 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~-~gP~LIVVPtSL 1151 (2693)
+.+|..+.|+|||..+-+++..+...... ..+++.|.+..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 56899999999999998887776543322 335555554443
No 110
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.73 E-value=1.4 Score=47.96 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.7
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999998877776654
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.58 E-value=0.57 Score=54.45 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++.-.||.|||..+|.++..+... ...+||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 468899999999988887766543 33578888763
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.49 E-value=0.76 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++.-.||.|||..++.++..+... ...++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEec
Confidence 677899999999888887766533 2347888876
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.46 E-value=0.73 Score=51.38 Aligned_cols=40 Identities=18% Similarity=-0.070 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1096 leGL~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...+.++..+.. .+.+.+|..+.|+|||..+-+++..+..
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554443 3556789999999999988777766543
No 114
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.89 E-value=0.48 Score=56.36 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred CccEEEEccccccc--cccchHHHHHHhhcccccccccccCCC
Q 000047 1214 QWHYIIIDEGHRIK--NASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1214 kWd~VIIDEAHRIK--N~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
...+|||||+|.+. .....+.+.+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999995 233344455555556677888777643
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.20 E-value=1.4 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 478899999999998877776654
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.96 E-value=2 Score=45.59 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
.+.+|..+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 55789999999999998877776654
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.82 E-value=4 Score=44.44 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhh-----cCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1092 REYQMSGLRWLVSLYN-----NQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~-----n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.|.+++.++..... .+.+.+|.-+.|+|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578888888876553 345567889999999998877777665
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.59 E-value=2.4 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.+|..+.|+|||..+.+++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999888777665
No 119
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.45 E-value=1.1 Score=54.18 Aligned_cols=38 Identities=13% Similarity=-0.017 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~ 1132 (2693)
|.+.+..+.....++. ..|+..+.|+|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455655655555443 4588999999999888777653
No 120
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.33 E-value=0.72 Score=58.71 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=63.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kf 1191 (2693)
++...-|+|||.....++. ..+.|||+|+..+ ..|.+.+.+... . ..-
T Consensus 165 ~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~---------------------~--~~~ 213 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASGI---------------------I--VAT 213 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTSC---------------------C--CCC
T ss_pred EEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcCc---------------------c--ccc
Confidence 5778899999976644431 1457999998665 568777632210 0 001
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCC
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQ 1254 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQ 1254 (2693)
++-+.|++.+.... .......+++||||||-.+- ...+...+..+.. .+++|.|=|-|
T Consensus 214 ~~~V~T~dsfL~~~--~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 214 KDNVRTVDSFLMNY--GKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp TTTEEEHHHHHHTT--TSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred cceEEEeHHhhcCC--CCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCccc
Confidence 12356777665422 12223458999999998652 2223333334444 88999998854
No 121
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.25 E-value=0.45 Score=50.68 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
.++......+.+.+|..+.|+|||..|-++..+. .....|++|-|
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~---~~~~~~~v~~~ 59 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG---RNAQGEFVYRE 59 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS---TTTTSCCEEEE
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC---CccCCCEEEEC
Confidence 3343444567788999999999998875543321 12345666434
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.85 E-value=0.95 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+.+|..+.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999998887777664
No 123
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.51 E-value=1.1 Score=51.85 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1100 RWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1100 ~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
..+......+.+.+|..++|+|||..+-++...+ .....|++.|.-..
T Consensus 20 ~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~---~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 20 EQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAA 67 (265)
T ss_dssp HHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS---TTTTSCEEEEEGGG
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc---CccCCCeEEEecCC
Confidence 3344444556788999999999998775554332 12235665554333
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.50 E-value=2.1 Score=47.05 Aligned_cols=43 Identities=23% Similarity=0.117 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1092 REYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1092 RPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
++..++.+...+.........+|..+.|+|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444443333211112468899999999988776665553
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.38 E-value=1.5 Score=46.70 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999988877776643
No 126
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.12 E-value=2 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.1
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++...||.|||..+|..+..+.. ....+||+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 56789999999888877765543 33457888875
No 127
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.95 E-value=0.66 Score=55.91 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=38.6
Q ss_pred cchHHHHHHHHHHHHHhhcCC----CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL----NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l----nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
.-++..++.+.++......+. +.+|..+.|+|||..+-++...+ ....|++.+....
T Consensus 47 vG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAGSE 107 (368)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEGGG
T ss_pred cChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccchh
Confidence 345667777777776665543 56899999999999888777665 2234566555433
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.18 E-value=1.5 Score=50.97 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=27.2
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
...+.+|..+.|+|||..+-+++..+ ..+++.|....++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSELVKK 90 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGGCCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHHHHh
Confidence 34567899999999998886665443 345666655444433
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.80 E-value=4.1 Score=51.45 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.+.+|..+.|+|||..+-++..++..... ..+++.|...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHH
Confidence 45689999999999988777776654422 2345544433
No 130
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.35 E-value=3 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=20.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+.+|..+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999887776654
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=81.99 E-value=4.3 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~L 1133 (2693)
.+|..+.|+|||..+-+++..+
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999887776655
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.99 E-value=5.4 Score=45.49 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+.+|..+.|+|||..+-++...+ ..+++.|....+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 456889999999999887776544 345666655444
No 133
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.44 E-value=2.3 Score=52.11 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+.+|..+.|+|||..+-+++..+ ..+++.|....+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l 120 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDL 120 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHH
Confidence 467899999999999988777655 345555544433
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.24 E-value=1.6 Score=52.43 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.+|..+.|+|||..+-+++..+ ..+++.|....++..|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 456899999999999887776553 3456666554444433
No 135
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=81.19 E-value=4 Score=50.26 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.+|..+.|+|||..+-+++..+ ..+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3567899999999999887665432 3567777666655444
No 136
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.66 E-value=5.8 Score=48.50 Aligned_cols=44 Identities=7% Similarity=-0.108 Sum_probs=28.9
Q ss_pred HHHHHHHH-HHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1093 EYQMSGLR-WLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1093 PYQleGL~-WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+-|..-|. ++..... .+.+.+|...+|+|||.++-.++..+...
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34544443 3333333 23455789999999999998888877654
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.64 E-value=1.5 Score=52.47 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=21.7
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
...+.+|..+.|+|||..+-.++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456788999999999988777766544
No 138
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.93 E-value=4.2 Score=47.56 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.4
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++.-+||.|||...|..+..+... ...+||+.|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 677889999998777776555433 2347888875
No 139
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.10 E-value=1.2 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=17.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~L 1133 (2693)
.++....|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3677899999999887765543
No 140
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.02 E-value=2.4 Score=51.15 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+..+......+. +.+|..+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3444444444444443 268899999999999888877664
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.45 E-value=0.56 Score=49.96 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=18.9
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIAL 1129 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIAL 1129 (2693)
.....+.+|..+.|+|||..|-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345678899999999999876444
No 142
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.37 E-value=7.7 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
...+|..+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 466899999999999887776554
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.95 E-value=4.4 Score=48.79 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHH-HHhhc--CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1092 REYQMSGLRWLV-SLYNN--QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1092 RPYQleGL~WLl-sLy~n--~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
++.+++.+..++ ..... ..+.+|..+.|+|||..+-+++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445555544333 32222 2346889999999999887777766443
No 144
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.76 E-value=3.8 Score=49.15 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=27.9
Q ss_pred hhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1106 YNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.....+.+|.-++|+|||..+-++.... .....|++.|--..+
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAAL 64 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSSC
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCCC
Confidence 3456778999999999998775554322 233456666644443
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.41 E-value=2.8 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=19.9
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 378999999999998877777664
No 146
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=76.30 E-value=4.9 Score=46.14 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++.-.||+|||...|-.+..+...+ ..+|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 5788999999977666666554432 457888776
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.59 E-value=7.2 Score=47.09 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=26.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~ 1153 (2693)
.+.+|..+.|+|||..+-+++..+ ...+++.|....++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 84 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHHh
Confidence 466899999999999887776654 134566665555443
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=75.23 E-value=11 Score=44.61 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=19.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+.+|..+.|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999998887666543
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.21 E-value=16 Score=43.92 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.3
Q ss_pred CeEEEcCCCCChHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+|..+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999998876666544
No 150
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.80 E-value=19 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALIC 1131 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa 1131 (2693)
.+.+|..+.|+|||..+-++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4678999999999988866644
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.67 E-value=1.9e+02 Score=36.48 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWES 1157 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~e 1157 (2693)
+|..+..-+..+.-.+|+...|.|||..++.++..+.... ..+++++.-.-...++..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHH
Confidence 4555553344555568999999999999988887776432 236888876544444433
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.57 E-value=0.93 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.0
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478999999999998887777654
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.24 E-value=3.7 Score=53.84 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhc-----------CCCCCEEEEecCchHHH
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETK-----------NDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----------~~~gP~LIVVPtSLL~Q 1154 (2693)
|...+..+......+...+|.-+.|+|||..+-++...+.... ....|.+.+||.....+
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 3344444444455677889999999999988766654331110 01246677777665444
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.97 E-value=6.7 Score=46.99 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh-hcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLY-NNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy-~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|...+.++.... ..+ .+.+|..+.|+|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445555555544 322 2368899999999988766666453
No 155
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.97 E-value=4.7 Score=49.26 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
..+.+|..+.|+|||..+-+++..+ ..+++.|....++..|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLTSKW 157 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhhccc
Confidence 4567899999999999887765543 3456666555444433
No 156
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=68.95 E-value=11 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
+.+.+|..+.|+|||..+-+++..+ ..+++.|....++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELL 86 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHH
Confidence 4567899999999999887666543 2455555433333
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=68.75 E-value=5 Score=47.76 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=27.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q 1154 (2693)
.+.+|..+.|+|||..+-+++..+ ..+++.|....+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~ 75 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESG 75 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhc
Confidence 455788999999999988777665 345666655444433
No 158
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.62 E-value=6.8 Score=49.52 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.+|..+.|+|||..+-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999999887776543 23456666655555444
No 159
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=68.25 E-value=8.6 Score=41.58 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=20.8
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455667899999999988877766554
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.16 E-value=13 Score=44.46 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
+...+|..+.|+|||..+-.++..+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456889999999999887776655443
No 161
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=67.04 E-value=6 Score=50.91 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=24.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
..+.+|..+.|+|||..+-++...+ ..+++.|...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~ 272 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET------GAFFFLINGP 272 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEch
Confidence 4567899999999999886665432 4556655533
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.56 E-value=9.1 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.6
Q ss_pred CeEEEcCCCCChHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~ 1132 (2693)
+.||..+.|+|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999887655543
No 163
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=63.91 E-value=16 Score=49.56 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHH----HHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMED----YLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed----~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||-....-.+......|.++||.+.....+..+.+ ++...|+++..++|+++..+|..++..+..+..+ ++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~---Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC---EE
Confidence 4678765554444444567899999998876655544 4444589999999999999999999999776655 45
Q ss_pred eeec-ccccccCccccCEEEEec
Q 000047 1484 LSIR-AGGVGVNLQAADTVIIFD 1505 (2693)
Q Consensus 1484 LSTr-AGGeGLNLQaADtVIiyD 1505 (2693)
|+|. .....+++...+.||+=+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEES
T ss_pred EECHHHHhhhhhccCCceEEecc
Confidence 5554 334456777787777643
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.18 E-value=11 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=18.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
.+.+|..+.|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35688999999999988777664
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=62.98 E-value=23 Score=45.66 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=57.4
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCC---------h-----
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGP---------P----- 1175 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs---------~----- 1175 (2693)
...|..-+|+|||+.+..++.. ..+|+|||||.... .+|..+|..|+|.. |..|-.. +
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467788999999877655532 25689999998664 77999999998865 5544332 0
Q ss_pred HHHHHHHHhhhhcCCccEEEEcHHHHHhc
Q 000047 1176 EERRRLFKEKIVHQKFNVLLTTYEYLMNK 1204 (2693)
Q Consensus 1176 ~eRk~l~ke~i~~~kfdVVITTYE~Lik~ 1204 (2693)
..|-..+. .+......|||+|...+...
T Consensus 89 ~~Rl~~l~-~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 89 SSRLSTLY-QLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHHHH-HGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHH-HHHhCCCCEEEEEHHHHhhc
Confidence 12222222 23345567999999988753
No 166
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=62.64 E-value=16 Score=42.75 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
..+.+|..+.|+|||..+-++...+ ..+++.|....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~ 89 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC------SATFLNISAAS 89 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT------TCEEEEEESTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEeeHHH
Confidence 4567899999999998886665533 24455554433
No 167
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.26 E-value=27 Score=42.78 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=65.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEe
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLL 1484 (2693)
.+||-....-.+..+...+.++||.+..+..+..+.+.|.. .++++..++|+++..+|...++.+..++.+ |++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~--Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCS--EEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCC--EEEE
Confidence 46787644443333446788999999999988888887776 688999999999998888888888765544 4444
Q ss_pred eeccccc---ccCccccCEEEE
Q 000047 1485 SIRAGGV---GVNLQAADTVII 1503 (2693)
Q Consensus 1485 STrAGGe---GLNLQaADtVIi 1503 (2693)
+....-. -+++...++||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 4333211 144556666655
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=59.24 E-value=24 Score=44.53 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
.|..++.-+..+.-.+|+...|.|||..++.++...... ...++|++.-.--..++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHH
Confidence 355554323344456899999999999998888776542 235688887765555554443
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=58.18 E-value=27 Score=38.60 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=31.6
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc--hHHHHHH
Q 000047 1098 GLRWLVS-LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS--VLPGWES 1157 (2693)
Q Consensus 1098 GL~WLls-Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS--LL~QW~e 1157 (2693)
+|.+++. -+..+.-.+|+.+.|+|||..+..++. . ..+++++|.-.. ....|..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEECCCCCCHHHHHH
Confidence 3444442 223344457889999999988877665 1 124566666443 3344544
No 170
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.52 E-value=22 Score=43.40 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=19.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
..+.+|..++|+|||..+-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999998887666544
No 171
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=57.21 E-value=12 Score=49.48 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH-HHHHHHHHC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG-WESEINFWA 1163 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q-W~eEfeKwa 1163 (2693)
.|-+.|+++|.. .....++....|+|||.+.+.-+.+++...+ ....+|+|+.+..... ..+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 477899999863 2345567788999999999988999887633 3456899998766544 444555544
No 172
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=54.70 E-value=31 Score=48.65 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=69.7
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
..+||-.+..-.+..+...+.++||.+..+..+..+.+.|.. .++++..++|+++..+|...+..+..++.+ ||
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~---Il 178 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH---IL 178 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS---EE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 357888766555555556788999999999999888888876 678999999999998888899999776555 45
Q ss_pred eeec-cccc---ccCccccCEEEEe
Q 000047 1484 LSIR-AGGV---GVNLQAADTVIIF 1504 (2693)
Q Consensus 1484 LSTr-AGGe---GLNLQaADtVIiy 1504 (2693)
|+|. .+-. -+++...++||+=
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEES
T ss_pred EECHHHHHHHHHhhcccCcCEEEEe
Confidence 5553 2211 1445667777663
No 173
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.55 E-value=21 Score=47.85 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999998777766543
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.21 E-value=42 Score=43.17 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=24.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
.+.+|.-+.|+|||..+-++...+ ..|++.|....+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~ 85 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDF 85 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHH
Confidence 457889999999998886666543 346666654433
No 175
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=52.95 E-value=11 Score=44.43 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhc
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETK 1137 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k 1137 (2693)
.+.++....|.|||..++.++..+...+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 4568889999999999999999887653
No 176
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=52.09 E-value=18 Score=47.59 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtS 1150 (2693)
..+.+++-.+|+|||...-++|..++.... ..-.+++|-|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 456799999999999998888888775432 223366667775
No 177
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.71 E-value=7.4 Score=52.20 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=24.2
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1111 NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
+.+|..++|+|||..|-++...+. ....+++.|-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF---GDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEe
Confidence 368999999999999987777663 2234555443
No 178
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=51.33 E-value=13 Score=45.09 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHH-HHh-h----cCCCeEE--EcCCCCChHHHHHHHHHHHHH
Q 000047 1092 REYQMSGLRWLV-SLY-N----NQLNGIL--ADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1092 RPYQleGL~WLl-sLy-~----n~lnGIL--ADEMGLGKTIQAIALIa~Lle 1135 (2693)
|+.+++.+.-++ ... . .....+| ..+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 455555554443 322 1 2234466 789999999988777665543
No 179
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.02 E-value=46 Score=45.47 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+.+|..+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346799999999999988877776644
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.40 E-value=72 Score=35.75 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=33.5
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
+.-.+|+.+.|+|||..++.++..+... .++++++.-.....++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 3445788999999999988888776643 345788776554455444443
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=49.06 E-value=23 Score=42.66 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
+|..++.-+..+.-.||+...|.|||..++.++......+ .++|++.-.--..++...+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHH
Confidence 4444443233444568999999999999888887665432 5788888665444444443
No 182
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=46.80 E-value=45 Score=42.48 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=23.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP 1148 (2693)
.+++-..|.|||-.+..++.++... ..++.||-|.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D 134 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAAD 134 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecC
Confidence 3566789999999998888777543 2343344444
No 183
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=45.65 E-value=27 Score=46.77 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~ 1153 (2693)
.|-+.|+++|.. .....++-..-|+|||.+.+.-+.+++...+ ....+|+|+.+....
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA 69 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAA 69 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHH
Confidence 588999999863 2345566677999999999999999987533 334589998876553
No 184
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=45.43 E-value=56 Score=46.34 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.+||-......+-.+...+.++||.+..+..+..+.+.|. ..++++..++|..+..++...++.+..+..+ |++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d--IvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID--ILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS--EEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC--EEE
Confidence 4677766554444445568899999999887766555553 3468899999999999999999999776555 444
Q ss_pred eeecccccccCccccCEEEE
Q 000047 1484 LSIRAGGVGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIi 1503 (2693)
.+.......+++...++||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 44455566677777766555
No 185
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=45.34 E-value=81 Score=34.80 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh----cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEe
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF----KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~----rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLL 1484 (2693)
..++.+.++++.+....|+||+|+|.....++.|-+.|=. .-+... +.|.-. ....+ |+|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~-~~~~~~------------~~~~P---V~L 85 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHN-LAGEGP------------RGGAP---VEI 85 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEE-ETTCSS------------TTCCS---EEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCc-cCCCCC------------CCCCC---EEE
Confidence 4578899999999999999999999999999999999932 123333 333322 12334 566
Q ss_pred eecccccccCccccCEEEEecCCC
Q 000047 1485 SIRAGGVGVNLQAADTVIIFDTDW 1508 (2693)
Q Consensus 1485 STrAGGeGLNLQaADtVIiyDppW 1508 (2693)
++... .....++.+|+++..+
T Consensus 86 ~~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 86 AWPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp ECTTS---CCCSCCSEEEECCSSC
T ss_pred eCCCC---CCCCcCCEEEECCCCC
Confidence 64321 1123578999999876
No 186
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=42.21 E-value=25 Score=44.60 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
.+|..++.-+..+.-.||+...|.|||..++.++...... ..++|++.-.--..++...
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHH
Confidence 3455555334444456899999999999999988877654 3568888765444444433
No 187
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=41.65 E-value=62 Score=40.13 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=28.0
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
........+|..++|+|||..+- .|..+ .....+||+.|--..+-
T Consensus 156 ~a~~~~~vli~Ge~GtGK~~lAr-~ih~~--s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 156 ISCAECPVLITGESGVGKEVVAR-LIHKL--SDRSKEPFVALNVASIP 200 (387)
T ss_dssp HTTCCSCEEEECSTTSSHHHHHH-HHHHH--STTTTSCEEEEETTTSC
T ss_pred hcCCCCCeEEecCCCcCHHHHHH-HHHHh--cCCCCCCeEEEecCCCC
Confidence 34456678999999999998663 23322 22345677666544443
No 188
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.49 E-value=23 Score=44.76 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|.+|....|+|||..|-+++..+ ..+|+.|....++..|.-|-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchH
Confidence 4577899999999999998887654 45688888888777775443
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.35 E-value=52 Score=40.87 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=34.4
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~ 1156 (2693)
.+.-.+|+.+.|+|||..++.++..+... .+++++|.......+|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 34446789999999999999888877543 34688888777666663
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=41.20 E-value=38 Score=40.77 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+.+|..++|+|||..+.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46778999999999999998888776
No 191
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=40.76 E-value=35 Score=39.22 Aligned_cols=35 Identities=20% Similarity=0.039 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEE
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVV 1146 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIV 1146 (2693)
..+.++.-..|-|||-.|+++....+..+ .+++||
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 34567888999999999999998776543 346666
No 192
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=40.44 E-value=42 Score=36.76 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=25.6
Q ss_pred cCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe--cCchHHHHH
Q 000047 1116 DEMGLGKTVQVIALICYLMETKNDRGPFLVVV--PSSVLPGWE 1156 (2693)
Q Consensus 1116 DEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV--PtSLL~QW~ 1156 (2693)
---|.|||..++.++.++...+ .++|+|- |...+..|.
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHH
Confidence 4568999999999998887532 2366665 344445554
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=39.01 E-value=32 Score=42.39 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1098 GLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1098 GL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
.|..+..-+..+.-.||+...|.|||..++.++..+.. ...++|++.-.--..+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHH
Confidence 44444432334444689999999999999888887765 34678888875544444333
No 194
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.04 E-value=28 Score=44.46 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
.|.+|..+.|+|||..|-+++..+ ..+|+.|....++..|.-|
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccchH
Confidence 567889999999999998887765 3467777777777666444
No 195
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=33.84 E-value=42 Score=42.39 Aligned_cols=59 Identities=27% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhcC----CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1093 EYQMSGLRWLVSLYNNQ----LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1093 PYQleGL~WLlsLy~n~----lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
+..++.+..++..+..+ .+.+|..+.|+|||..|.++...+ +...+++.|....+...|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGCCSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHHHHh
Confidence 33444444444433333 467899999999999998887765 222467776665555444
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.68 E-value=38 Score=43.32 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|.+|....|+|||..|-+++..+ ..+|+.|....++..|.-|-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCchH
Confidence 3567899999999999998887665 35688888777776665443
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=33.09 E-value=79 Score=38.01 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=18.5
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
..+|.-..|.|||-.+..++.++..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456677999999988777766653
No 198
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=31.75 E-value=1e+02 Score=39.38 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=30.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAP 1164 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaP 1164 (2693)
.+++-..|.|||.++..++.++... ..+ +++|+--.--..-.+.+..|..
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~--G~k-Vllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR--GYK-VGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT--TCC-EEEEECCCSSTHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC--CCe-EEEEeCCCcchhHHHHHHHHHH
Confidence 3577889999999999898887643 234 4555522111222344555553
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.39 E-value=24 Score=45.00 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
..|.+|..+.|+|||..|-+++..+ ..+|+.|....++..|.-+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 3467899999999999988887655 3568888877777666433
No 200
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.26 E-value=1.2e+02 Score=36.76 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHHh-hcCCCeEEEEEcchHHHHHHHHHHhh-cCC---eEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1408 LCGKLEMLDRLLPKL-KATDHRVLFFSTMTRLLDVMEDYLTF-KQY---RYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kL-katGhKVLIFSQft~tLDILed~L~~-rGi---kylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
.+||-....-++..+ ...+.++||.+.....+..+.+.|.. .++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 356766555544433 24678999999998887766666644 365 89999999998776655432 2245
Q ss_pred Eeeeccccc-----ccCccccCEEEE
Q 000047 1483 LLSIRAGGV-----GVNLQAADTVII 1503 (2693)
Q Consensus 1483 LLSTrAGGe-----GLNLQaADtVIi 1503 (2693)
+.+...+-. .+++...++||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 555444332 345666776665
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.90 E-value=31 Score=44.39 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESE 1158 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eE 1158 (2693)
..|.||....|+|||..|-+++..+ ..+|+.|....++..|.-|
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCH
Confidence 4566888999999999988887655 3467888777777666443
No 202
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.79 E-value=61 Score=31.13 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=19.2
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
|..|..+......++.+.. ..+..+.+|-.+....-.++++..+
T Consensus 25 g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~ 68 (119)
T 2j48_A 25 GFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLR 68 (119)
T ss_dssp TCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4555554444444433322 3455555655443323333444443
No 203
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=30.43 E-value=56 Score=46.60 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---CCCCEEEEecCchHH
Q 000047 1088 GGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---DRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1088 ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---~~gP~LIVVPtSLL~ 1153 (2693)
+..|-+-|.++|.. .+.+.++...-|+|||.+.+.=+.+++..+. ....+|||+++....
T Consensus 8 ~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa 70 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASA 70 (1232)
T ss_dssp --CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHH
T ss_pred CCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHH
Confidence 35788999998852 3557788889999999998887788776543 334589999986553
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=30.36 E-value=1e+02 Score=37.07 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHh---cCCCCCEEEEecCch
Q 000047 1098 GLRWLVS-LYNNQLNGILADEMGLGKTVQVIALICYLMET---KNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1098 GL~WLls-Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~---k~~~gP~LIVVPtSL 1151 (2693)
+|.+++. -+..+.-.+|+.+.|+|||..++.++...... +...+++++|.-...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4444442 12334445889999999999888877654221 111356777776553
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=30.24 E-value=89 Score=37.91 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEe
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVV 1147 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVV 1147 (2693)
++.-..|.|||..+..++.++... .+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 466789999998887777666432 23355554
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.08 E-value=73 Score=36.54 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
..+.+|..++|+|||..+-++...+ ..|++.|....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~ 80 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSD 80 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHH
Confidence 3456899999999998876665543 23555554443
No 207
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=29.65 E-value=1.1e+02 Score=37.78 Aligned_cols=45 Identities=11% Similarity=-0.041 Sum_probs=32.3
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.-.+|+.+.|+|||..++.++..+... .+++++|.-.....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 34445788999999999998888776543 3457888766555554
No 208
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=29.60 E-value=2.4e+02 Score=31.24 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=54.5
Q ss_pred cccHHHHH-HHHHHHhhc--CCCeEEEEEcchHHHHHHHHHHhhc-----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEML-DRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLelL-deLL~kLka--tGhKVLIFSQft~tLDILed~L~~r-----GikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+||-... .-++..+.. .+.++||.+..+..++.+.+.+... ++++..++|+.+..++.+.+.. ...+
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~~~- 136 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH- 136 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCS-
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CCCC-
Confidence 46776533 333333332 2348999999988887776666543 7899999999987665554433 2223
Q ss_pred eEEEeeec-cc-----ccccCccccCEEEE
Q 000047 1480 FIFLLSIR-AG-----GVGVNLQAADTVII 1503 (2693)
Q Consensus 1480 fVfLLSTr-AG-----GeGLNLQaADtVIi 1503 (2693)
++++|. .. ...+++...++||+
T Consensus 137 --i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 137 --IVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp --EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --EEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 455553 22 12356666777665
No 209
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=29.58 E-value=53 Score=44.11 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=36.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
+.+-.-|.++|..+..... + ..+|-..-|-|||..+..++..+. ..++|.+|+..
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~-~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~ 228 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-G-VAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAKA 228 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-E-EEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCC
T ss_pred CCCCHHHHHHHHHHHHhhh-C-eEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHH
Confidence 4677889999987776432 2 235666699999966555555442 23688888744
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=29.25 E-value=2e+02 Score=32.14 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=25.5
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc---CCCCCEEEEecCc
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK---NDRGPFLVVVPSS 1150 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k---~~~gP~LIVVPtS 1150 (2693)
+.-.+|+-+.|+|||..+..++....... .....+++|.-..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34457889999999998877765432111 0134466665443
No 211
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=29.24 E-value=2.2e+02 Score=36.87 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
.+.+|.-+.|+|||..+-++...+ ..+++.|.-.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~ 98 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGS 98 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehh
Confidence 356899999999998876655432 2456655543
No 212
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.17 E-value=2.2e+02 Score=28.63 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=18.7
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYL 1454 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikyl 1454 (2693)
..+|||..........|...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 45666666666666777777766666543
No 213
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=28.95 E-value=57 Score=46.06 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=34.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.|+|- -|+|||.+.+.-|.+++..+....++|+|||.....+-
T Consensus 5 lV~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~ 47 (1166)
T 3u4q_B 5 FLVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLM 47 (1166)
T ss_dssp EEEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHH
T ss_pred EEEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHH
Confidence 34544 89999999999999999876655779999999876653
No 214
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.13 E-value=1.1e+02 Score=29.74 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=7.5
Q ss_pred CCCCccchhhhhhhh
Q 000047 1506 TDWNPQVDLQAQARA 1520 (2693)
Q Consensus 1506 ppWNP~~diQAIGRA 1520 (2693)
-|+++....+++.++
T Consensus 100 Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 100 KSFNFDELKEKVKKL 114 (116)
T ss_dssp CCSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555555443
No 215
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=26.23 E-value=2e+02 Score=32.34 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=42.5
Q ss_pred cccHHHH-HHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhc-----CCeEEEEeCCCCHHHHHHH
Q 000047 1408 LCGKLEM-LDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGAL 1468 (2693)
Q Consensus 1408 ~SgKLel-LdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~r-----GikylRLDGSTS~eERqei 1468 (2693)
.+||-.. +.-++..+. ..+.++||.+..+..+..+.+.+... ++++..+.|+....++...
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR 139 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh
Confidence 4678754 445555543 24579999999998887777666542 7889999999887655443
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.09 E-value=32 Score=43.74 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~ 1156 (2693)
.|.+|..+.|+|||..|-+++..+ ..+++.|....++..|.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 456889999999999998887665 35677777777666553
No 217
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=25.69 E-value=74 Score=32.66 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEc-chHHHHHHHHHHhhcCCeEEEEeCCCC
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFST-MTRLLDVMEDYLTFKQYRYLRLDGHTS 1461 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQ-ft~tLDILed~L~~rGikylRLDGSTS 1461 (2693)
++..+...+..+...+.+|||||. .-.........|...||++..|+|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 344455555554433389999994 555566788888999999999999875
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=25.62 E-value=1e+02 Score=34.59 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.-.+|+.+.|+|||..++.++....... ..+++++.-.....+....+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~ 79 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHH
Confidence 3458999999999999888876644332 245777776544444444443
No 219
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=25.02 E-value=2.9e+02 Score=31.29 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=54.4
Q ss_pred cccHHHH-HHHHHHHhh-------cCCCeEEEEEcchHHHHHHHHHH----hhcCCeEEEEeCCCCHHHHHHHHHHHhCC
Q 000047 1408 LCGKLEM-LDRLLPKLK-------ATDHRVLFFSTMTRLLDVMEDYL----TFKQYRYLRLDGHTSGGDRGALIDKFNQQ 1475 (2693)
Q Consensus 1408 ~SgKLel-LdeLL~kLk-------atGhKVLIFSQft~tLDILed~L----~~rGikylRLDGSTS~eERqeiId~FN~~ 1475 (2693)
.+||-.. +.-++..+. ..+.++||.+..+..+..+.+.+ ...++.+..+.|+.+..++...+..
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 151 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER---- 151 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----
Confidence 4677643 444444433 24678999999988766554444 4568999999999987766554432
Q ss_pred CCCceEEEeeec-c----cc-cccCccccCEEEE
Q 000047 1476 DSPFFIFLLSIR-A----GG-VGVNLQAADTVII 1503 (2693)
Q Consensus 1476 dSd~fVfLLSTr-A----GG-eGLNLQaADtVIi 1503 (2693)
..+ +|++|. . .. ..+++...++||+
T Consensus 152 ~~~---I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 GVE---ICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp CCS---EEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CCC---EEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 222 455553 1 11 2346667776655
No 220
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=24.60 E-value=2.1e+02 Score=28.33 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=42.4
Q ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc-----cc-cCccccCEEEEecCCCCccchhhhhhhhcccC
Q 000047 1451 YRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG-----VG-VNLQAADTVIIFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1451 ikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG-----eG-LNLQaADtVIiyDppWNP~~diQAIGRAHRIG 1524 (2693)
+..+.+|-.+....-.++++.++.......+++++..... .- .....+...-++.-|+++..+.+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6777777776655566667666654455556666643321 11 11122333344556777777777777776544
Q ss_pred C
Q 000047 1525 Q 1525 (2693)
Q Consensus 1525 Q 1525 (2693)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 221
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=24.31 E-value=74 Score=32.32 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCC
Q 000047 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTS 1461 (2693)
Q Consensus 1415 LdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS 1461 (2693)
|.+.+..+ ..+.+|+|||..-.........|...||++..|+|++.
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34444444 45678999998877778888999999999999999764
No 222
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=24.30 E-value=2.7e+02 Score=30.55 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1413 elLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
..+.+.|..+......+-|.+........|++.|...|+.+..+++... .| ... +.+.|--...|
T Consensus 48 ~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~---v~v~t~~~~KG 112 (174)
T 3dmn_A 48 DQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APG---VIVVPSFLAKG 112 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSS---EEEEEGGGCTT
T ss_pred HHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCC---eEEEEccccCC
Confidence 3444444443334567888899999999999999999999988876442 12 223 55666667788
Q ss_pred cCccccCEEEEecCCCC
Q 000047 1493 VNLQAADTVIIFDTDWN 1509 (2693)
Q Consensus 1493 LNLQaADtVIiyDppWN 1509 (2693)
+- .|+||++++...
T Consensus 113 lE---f~~V~~~~~~~~ 126 (174)
T 3dmn_A 113 LE---FDAVIVWNANQE 126 (174)
T ss_dssp CC---EEEEEEETCBTT
T ss_pred cC---CCEEEEecCCcc
Confidence 65 899999997653
No 223
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=24.14 E-value=2e+02 Score=37.91 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=50.8
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
+.++||.+..+..+....+.|...|+....++|+++..++..++..+......+.+++++..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 56999999999999988888988899999999999999999888888544444556665553
No 224
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=24.13 E-value=3e+02 Score=31.58 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=53.1
Q ss_pred cccHHHH-HHHHHHHhhc--CCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCce
Q 000047 1408 LCGKLEM-LDRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFF 1480 (2693)
Q Consensus 1408 ~SgKLel-LdeLL~kLka--tGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqeiId~FN~~dSd~f 1480 (2693)
.+||-.. +.-++..+.. .+.++||.+..+..+..+.+.+. ..++.+..+.|+....++...+. . ..+
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~-- 163 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K-KPH-- 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T-CCS--
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C-CCC--
Confidence 4677654 3344444433 24579999999887766655554 44899999999988655443332 2 223
Q ss_pred EEEeeec-cc------ccccCccccCEEEE
Q 000047 1481 IFLLSIR-AG------GVGVNLQAADTVII 1503 (2693)
Q Consensus 1481 VfLLSTr-AG------GeGLNLQaADtVIi 1503 (2693)
++++|. .+ ..++++...++||+
T Consensus 164 -I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 -IIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp -EEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred -EEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 455552 21 13466777776665
No 225
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.67 E-value=2.2e+02 Score=28.34 Aligned_cols=92 Identities=14% Similarity=-0.003 Sum_probs=45.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC--CCCceEEEeeecccccccCccc--cCE
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGVGVNLQA--ADT 1500 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~--dSd~fVfLLSTrAGGeGLNLQa--ADt 1500 (2693)
.+..|..+......++.+ ....+..+.+|-.+...+-.++++.++.. ...+.|++++...-..-...-. |+.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 456666665555544443 33457777777665544455555555443 1234455555432111111111 222
Q ss_pred EEEecCCCCccchhhhhhhhcc
Q 000047 1501 VIIFDTDWNPQVDLQAQARAHR 1522 (2693)
Q Consensus 1501 VIiyDppWNP~~diQAIGRAHR 1522 (2693)
++--|+++..+.+++.++.+
T Consensus 102 --~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 102 --YLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --EEeccCCHHHHHHHHHHHHh
Confidence 23346777777777666644
No 226
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=23.53 E-value=2.1e+02 Score=29.24 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCeEEEEEc------chHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHh
Q 000047 1426 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1426 GhKVLIFSQ------ft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN 1473 (2693)
.++|+||+. +=..+.....+|...|+.|..++=....+.+..+.+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g 70 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN 70 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC
Confidence 568999998 457889999999999999988876556666666655543
No 227
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.96 E-value=1.2e+02 Score=30.11 Aligned_cols=102 Identities=12% Similarity=-0.008 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCC--CCCceEEEeeeccccc
Q 000047 1414 MLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQ--DSPFFIFLLSIRAGGV 1491 (2693)
Q Consensus 1414 lLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~--dSd~fVfLLSTrAGGe 1491 (2693)
.|..+|.. .|..|..+......++.+ ....+..+.+|-.+...+-.++++.++.. ...+.+++++...-..
T Consensus 18 ~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 18 TFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred HHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 34444433 355666655554444444 33557777777666544555566665543 3445555555433221
Q ss_pred ccCcc--ccCEEEEecCCCCccchhhhhhhhcccC
Q 000047 1492 GVNLQ--AADTVIIFDTDWNPQVDLQAQARAHRIG 1524 (2693)
Q Consensus 1492 GLNLQ--aADtVIiyDppWNP~~diQAIGRAHRIG 1524 (2693)
-...- .|+. ++--|+++..+.+++.++.+-+
T Consensus 91 ~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 91 LGKEACELFDF--YLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp CCHHHHHHCSE--EEESSCCHHHHHHHHHHHC---
T ss_pred HHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccC
Confidence 11111 1333 4445777777777777776544
No 228
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.74 E-value=1.2e+02 Score=30.32 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=19.1
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEE
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYL 1454 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikyl 1454 (2693)
..+|||..........|..+|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 45677777777777777777776666544
No 229
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=22.46 E-value=3.3e+02 Score=32.51 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=55.8
Q ss_pred cccHHHHH-HHHHHHhhc--CCCeEEEEEcchHHHHHHHHHHhhc-----CCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEML-DRLLPKLKA--TDHRVLFFSTMTRLLDVMEDYLTFK-----QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLelL-deLL~kLka--tGhKVLIFSQft~tLDILed~L~~r-----GikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+||-... .-++..+.. .+.++||.+..+..+..+.+.+... ++++..++|+.+..++...+.. +..+
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~- 130 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPH- 130 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---SCCS-
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---CCCC-
Confidence 46776543 333333322 3568999999998887776666543 7899999999987766655543 2233
Q ss_pred eEEEeeeccc-----ccccCccccCEEEE
Q 000047 1480 FIFLLSIRAG-----GVGVNLQAADTVII 1503 (2693)
Q Consensus 1480 fVfLLSTrAG-----GeGLNLQaADtVIi 1503 (2693)
|++.+...+ ...+++...++||+
T Consensus 131 -iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 131 -IVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp -EEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred -EEEECHHHHHHHHHcCCccccccCEEEE
Confidence 444443332 22356667777665
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=22.45 E-value=1.7e+02 Score=36.33 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=31.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL 1152 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL 1152 (2693)
.+.-.+|+.+.|+|||..++.++..+... .+++++|.-...+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 44456889999999999999888877643 2457888765444
No 231
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=22.05 E-value=3.4e+02 Score=29.47 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=54.5
Q ss_pred cccHHHH-HHHHHHHhh-----cCCCeEEEEEcchHHHHHHHHHHhhc--CCeEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEM-LDRLLPKLK-----ATDHRVLFFSTMTRLLDVMEDYLTFK--QYRYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLel-LdeLL~kLk-----atGhKVLIFSQft~tLDILed~L~~r--GikylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+||... +.-++..+. ..+.++||.+..+..+..+.+.+... ++++..+.|+....+....+.. ..+
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 122 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD- 122 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS-
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC-
Confidence 4677765 444455443 34678999999988888777777654 4788889998875544433321 222
Q ss_pred eEEEeeec-cc----c-cccCccccCEEEE
Q 000047 1480 FIFLLSIR-AG----G-VGVNLQAADTVII 1503 (2693)
Q Consensus 1480 fVfLLSTr-AG----G-eGLNLQaADtVIi 1503 (2693)
++++|. .. . ..+++...++||+
T Consensus 123 --i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 123 --AVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp --EEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred --EEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 455553 11 1 2345666776665
No 232
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.95 E-value=3.2e+02 Score=28.57 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=37.0
Q ss_pred CCeEEEEEcc------hHHHHHHHHHHhhcCCe---EEEEeCCCCHHHHHHHHHHHh
Q 000047 1426 DHRVLFFSTM------TRLLDVMEDYLTFKQYR---YLRLDGHTSGGDRGALIDKFN 1473 (2693)
Q Consensus 1426 GhKVLIFSQf------t~tLDILed~L~~rGik---ylRLDGSTS~eERqeiId~FN 1473 (2693)
.++|+||+.. =..+.....+|...|+. |..++=....+.|+.+.+...
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg 71 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE 71 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC
Confidence 5789999984 56788899999999998 888887666666666655543
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=21.56 E-value=50 Score=39.38 Aligned_cols=37 Identities=22% Similarity=0.045 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHH
Q 000047 1096 MSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1096 leGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
...+..+......+.+.+|..+.|+|||..+-++...
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3344444444445778899999999999887666543
No 234
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=20.92 E-value=2.5e+02 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred CCeEEEEEc------chHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHH
Q 000047 1426 DHRVLFFST------MTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKF 1472 (2693)
Q Consensus 1426 GhKVLIFSQ------ft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~F 1472 (2693)
.++|+||+. +=..+.....+|...|+.|..++=....+.|..+.+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~ 67 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYS 67 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHH
Confidence 679999995 44678889999999999999888766666666665544
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=20.91 E-value=1e+02 Score=37.34 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
..+.+|..++|+|||..|-++...+ ..|++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 4567899999999999887766544 3566666544
No 236
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.83 E-value=1.6e+02 Score=41.40 Aligned_cols=92 Identities=9% Similarity=0.025 Sum_probs=62.4
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCC----eEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQY----RYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGi----kylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
..+||-.++.-++..+...+.++||.+..+..+..+.+.|. ..++ .+..++|+++..++.+.++.+.. .+
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~ 157 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FK 157 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CS
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CC
Confidence 34778766666666666778899999999987766655554 4567 89999999998888877877755 33
Q ss_pred ceEEEeeec-ccccccC-ccccCEEEE
Q 000047 1479 FFIFLLSIR-AGGVGVN-LQAADTVII 1503 (2693)
Q Consensus 1479 ~fVfLLSTr-AGGeGLN-LQaADtVIi 1503 (2693)
||++|. .+-.-+. |...++||+
T Consensus 158 ---IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 158 ---IVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp ---EEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred ---EEEEcHHHHHHHHHHhccCCEEEE
Confidence 455543 2222222 445666554
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=20.56 E-value=1.3e+02 Score=35.96 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHH-HhhcCCCeEEEcCCCCChHHHHHHHHHH
Q 000047 1098 GLRWLVS-LYNNQLNGILADEMGLGKTVQVIALICY 1132 (2693)
Q Consensus 1098 GL~WLls-Ly~n~lnGILADEMGLGKTIQAIALIa~ 1132 (2693)
+|.+++. -+..+.-.+|+.+.|+|||..++.++..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4445542 1223334588999999999998887765
No 238
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=20.16 E-value=2e+02 Score=32.19 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=42.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec-cc-----ccccCc
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR-AG-----GVGVNL 1495 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr-AG-----GeGLNL 1495 (2693)
.+.++||.+..+..+..+.+.+.. .++....+.|+....++... +.. ..+ ++++|. .. ...+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~---iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVD---IIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCS---EEEECHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCC---EEEECHHHHHHHHHcCCcCc
Confidence 578899999999988888777765 47888999988775544333 322 223 455552 21 124556
Q ss_pred cccCEEEE
Q 000047 1496 QAADTVII 1503 (2693)
Q Consensus 1496 QaADtVIi 1503 (2693)
...++||+
T Consensus 166 ~~~~~lVi 173 (228)
T 3iuy_A 166 RSITYLVI 173 (228)
T ss_dssp TTCCEEEE
T ss_pred ccceEEEE
Confidence 66766655
Done!