Query 000047
Match_columns 2693
No_of_seqs 591 out of 3038
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000047.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000047hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 3.5E-39 2.5E-43 388.3 26.7 237 1326-1562 3-254 (346)
2 d1z63a1 c.37.1.19 (A:432-661) 100.0 1.2E-38 8.9E-43 360.4 17.3 225 1081-1332 4-230 (230)
3 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 1.5E-38 1.1E-42 373.1 13.8 230 1089-1322 54-298 (298)
4 d1z5za1 c.37.1.19 (A:663-906) 100.0 1.4E-35 1E-39 339.0 21.3 215 1334-1562 1-221 (244)
5 d2fwra1 c.37.1.19 (A:257-456) 99.8 8.8E-21 6.4E-25 209.9 10.4 193 1329-1539 1-199 (200)
6 d1wp9a2 c.37.1.19 (A:201-486) 99.8 2.3E-19 1.7E-23 208.1 12.3 131 1409-1545 142-282 (286)
7 d1s2ma2 c.37.1.19 (A:252-422) 99.8 1.4E-18 1E-22 188.9 14.9 135 1408-1551 16-150 (171)
8 d1t5ia_ c.37.1.19 (A:) Spliceo 99.7 3.9E-18 2.8E-22 185.4 15.4 138 1407-1552 10-147 (168)
9 d2fz4a1 c.37.1.19 (A:24-229) D 99.7 1.7E-18 1.2E-22 192.9 12.3 144 1081-1252 61-205 (206)
10 d1fuka_ c.37.1.19 (A:) Initiat 99.7 1.2E-17 8.6E-22 180.8 16.8 123 1409-1538 12-134 (162)
11 d1hv8a2 c.37.1.19 (A:211-365) 99.7 6.1E-18 4.4E-22 181.1 14.3 133 1409-1551 14-146 (155)
12 d2j0sa2 c.37.1.19 (A:244-411) 99.7 3.6E-17 2.6E-21 178.0 14.7 133 1409-1550 19-151 (168)
13 d2bmfa2 c.37.1.14 (A:178-482) 99.7 1.3E-17 9.3E-22 191.7 11.5 262 1106-1528 6-292 (305)
14 d2rb4a1 c.37.1.19 (A:307-474) 99.7 1.9E-16 1.4E-20 172.2 14.9 133 1409-1550 17-155 (168)
15 d1rifa_ c.37.1.23 (A:) DNA hel 99.7 4.3E-17 3.2E-21 190.3 10.5 162 1089-1268 112-277 (282)
16 d1wp9a1 c.37.1.19 (A:1-200) pu 99.7 3.5E-16 2.6E-20 170.6 16.6 168 1089-1268 8-181 (200)
17 d1oywa3 c.37.1.19 (A:207-406) 99.6 1.9E-15 1.4E-19 168.8 14.3 119 1408-1531 14-132 (200)
18 d1t5la2 c.37.1.19 (A:415-595) 99.5 2.4E-14 1.7E-18 157.8 16.7 113 1411-1526 16-133 (181)
19 d1c4oa2 c.37.1.19 (A:410-583) 99.5 4.1E-14 3E-18 155.1 14.1 105 1419-1526 24-133 (174)
20 d2p6ra3 c.37.1.19 (A:1-202) He 99.5 5.3E-14 3.9E-18 154.8 10.7 156 1090-1260 25-188 (202)
21 d1gkub1 c.37.1.16 (B:1-250) He 99.4 6.3E-13 4.6E-17 149.5 14.0 166 1089-1266 42-229 (237)
22 d1oywa2 c.37.1.19 (A:1-206) Re 99.3 6.1E-13 4.5E-17 146.3 9.9 170 1089-1269 24-201 (206)
23 d1yksa1 c.37.1.14 (A:185-324) 99.3 2.8E-12 2.1E-16 129.9 11.1 134 1105-1252 3-139 (140)
24 d1a1va1 c.37.1.14 (A:190-325) 99.2 1.1E-11 8.2E-16 127.9 10.8 125 1108-1252 7-136 (136)
25 d1gm5a3 c.37.1.19 (A:286-549) 99.2 3.1E-11 2.2E-15 139.8 12.1 157 1089-1257 82-246 (264)
26 d1veca_ c.37.1.19 (A:) DEAD bo 99.2 6.8E-11 4.9E-15 131.5 13.4 157 1089-1252 24-187 (206)
27 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.2 8.5E-11 6.2E-15 130.6 14.1 155 1090-1252 26-186 (208)
28 d1t6na_ c.37.1.19 (A:) Spliceo 99.1 8.6E-11 6.3E-15 130.7 13.7 167 1089-1262 22-196 (207)
29 d1gkub2 c.37.1.16 (B:251-498) 99.1 3.3E-12 2.4E-16 145.4 1.5 101 1410-1526 12-117 (248)
30 d1jr6a_ c.37.1.14 (A:) HCV hel 99.1 1.7E-11 1.2E-15 129.6 6.8 99 1425-1538 34-136 (138)
31 d2j0sa1 c.37.1.19 (A:22-243) P 99.1 1.8E-10 1.3E-14 129.9 13.5 157 1089-1252 38-200 (222)
32 d2eyqa3 c.37.1.19 (A:546-778) 99.1 6.1E-10 4.4E-14 126.8 17.2 156 1089-1256 54-217 (233)
33 d1wrba1 c.37.1.19 (A:164-401) 99.1 5.3E-10 3.9E-14 126.9 15.8 167 1087-1261 40-225 (238)
34 d2g9na1 c.37.1.19 (A:21-238) I 99.0 2.1E-10 1.5E-14 128.8 9.2 157 1090-1252 34-196 (218)
35 d2p6ra4 c.37.1.19 (A:203-403) 99.0 4.3E-10 3.1E-14 125.0 10.2 119 1417-1538 31-186 (201)
36 d1s2ma1 c.37.1.19 (A:46-251) P 99.0 1.3E-09 9.5E-14 120.5 13.8 163 1089-1259 22-190 (206)
37 d1q0ua_ c.37.1.19 (A:) Probabl 98.9 5.6E-10 4.1E-14 122.8 9.3 165 1089-1261 22-196 (209)
38 d1qdea_ c.37.1.19 (A:) Initiat 98.9 3.4E-09 2.4E-13 118.4 13.6 163 1089-1260 31-199 (212)
39 d1a1va2 c.37.1.14 (A:326-624) 98.8 1.2E-09 8.9E-14 127.2 6.1 113 1426-1545 36-161 (299)
40 d1gm5a4 c.37.1.19 (A:550-755) 98.8 7.4E-10 5.4E-14 124.0 2.5 118 1410-1530 13-142 (206)
41 d2eyqa5 c.37.1.19 (A:779-989) 98.5 1.2E-07 8.6E-12 106.1 11.7 116 1415-1535 20-138 (211)
42 d1yksa2 c.37.1.14 (A:325-623) 98.1 3.1E-06 2.3E-10 99.1 10.0 94 1425-1526 35-147 (299)
43 d1tf5a4 c.37.1.19 (A:396-570) 97.8 3.3E-05 2.4E-09 84.0 10.1 119 1409-1532 17-143 (175)
44 d1nkta4 c.37.1.19 (A:397-615) 96.8 0.0029 2.1E-07 70.1 12.1 130 1408-1547 16-197 (219)
45 d1tf5a3 c.37.1.19 (A:1-226,A:3 96.2 0.016 1.1E-06 66.3 13.7 158 1089-1265 79-264 (273)
46 d1w36d1 c.37.1.19 (D:2-360) Ex 95.2 0.02 1.5E-06 67.8 9.5 148 1089-1254 147-299 (359)
47 d1nkta3 c.37.1.19 (A:-15-225,A 95.1 0.064 4.7E-06 61.6 13.2 121 1089-1226 96-229 (288)
48 d1a5ta2 c.37.1.20 (A:1-207) de 95.0 0.026 1.9E-06 61.6 9.2 47 1090-1136 2-51 (207)
49 d1njfa_ c.37.1.20 (A:) delta p 93.6 0.11 8.4E-06 57.1 10.6 144 1095-1262 17-164 (239)
50 d1t5la1 c.37.1.19 (A:2-414) Nu 93.4 0.15 1.1E-05 61.4 12.1 73 1094-1172 15-89 (413)
51 d1sxje2 c.37.1.20 (E:4-255) Re 93.2 0.05 3.6E-06 59.3 6.7 49 1213-1261 130-179 (252)
52 d1gm5a3 c.37.1.19 (A:286-549) 90.9 1.5 0.00011 49.6 15.7 93 1408-1503 114-211 (264)
53 d2gnoa2 c.37.1.20 (A:11-208) g 90.5 0.26 1.9E-05 53.4 8.5 54 1095-1149 2-55 (198)
54 d1c4oa1 c.37.1.19 (A:2-409) Nu 87.6 1.1 8.1E-05 53.5 11.9 72 1094-1171 12-85 (408)
55 d1uaaa1 c.37.1.19 (A:2-307) DE 86.8 0.51 3.7E-05 52.2 7.9 66 1090-1161 1-68 (306)
56 d1sxjb2 c.37.1.20 (B:7-230) Re 85.7 0.42 3.1E-05 51.5 6.2 38 1097-1134 22-61 (224)
57 d1sxjc2 c.37.1.20 (C:12-238) R 85.4 0.28 2E-05 52.8 4.5 50 1082-1134 9-60 (227)
58 d1iqpa2 c.37.1.20 (A:2-232) Re 83.9 1.7 0.00013 46.5 10.2 40 1095-1134 29-70 (231)
59 d1ixza_ c.37.1.20 (A:) AAA dom 82.7 1.3 9.2E-05 49.4 8.7 40 1110-1155 43-82 (247)
60 d1sxjd2 c.37.1.20 (D:26-262) R 81.9 1.1 7.7E-05 48.0 7.4 25 1111-1135 35-59 (237)
61 d2eyqa3 c.37.1.19 (A:546-778) 81.2 3 0.00022 46.3 11.0 94 1407-1503 85-183 (233)
62 d1pjra1 c.37.1.19 (A:1-318) DE 76.4 1.5 0.00011 48.9 6.8 59 1090-1154 11-70 (318)
63 d1sxja2 c.37.1.20 (A:295-547) 73.8 2.9 0.00021 44.9 8.0 41 1211-1251 120-162 (253)
64 d1jbka_ c.37.1.20 (A:) ClpB, A 69.2 11 0.00079 40.7 11.1 116 1108-1223 42-185 (195)
65 d1r6bx2 c.37.1.20 (X:169-436) 68.1 7.8 0.00057 43.6 10.1 126 1099-1224 27-182 (268)
66 d1xbta1 c.37.1.24 (A:18-150) T 67.8 5.1 0.00037 40.6 7.7 35 1113-1150 6-40 (133)
67 d2eyqa5 c.37.1.19 (A:779-989) 66.8 9.2 0.00067 41.8 9.9 83 1138-1227 29-114 (211)
68 d1l8qa2 c.37.1.20 (A:77-289) C 63.6 21 0.0015 38.2 12.2 43 1094-1136 17-63 (213)
69 d1ny5a2 c.37.1.20 (A:138-384) 63.3 11 0.00079 41.5 9.9 50 1099-1151 13-62 (247)
70 d1vmaa2 c.37.1.10 (A:82-294) G 62.5 3.8 0.00028 44.8 5.8 58 1113-1173 15-72 (213)
71 d1qvra2 c.37.1.20 (A:149-535) 62.1 14 0.0011 43.3 11.3 117 1108-1225 42-186 (387)
72 d1em8a_ c.128.1.1 (A:) DNA pol 58.0 17 0.0012 37.1 9.7 109 1409-1551 19-132 (147)
73 d1xx6a1 c.37.1.24 (A:2-142) Th 57.6 5.6 0.00041 40.9 5.8 35 1113-1150 11-45 (141)
74 d1okkd2 c.37.1.10 (D:97-303) G 57.1 5.3 0.00039 43.4 5.8 133 1112-1269 9-153 (207)
75 d2qy9a2 c.37.1.10 (A:285-495) 55.9 7.1 0.00052 42.6 6.5 131 1113-1268 13-155 (211)
76 d1nlfa_ c.37.1.11 (A:) Hexamer 55.5 3.5 0.00026 44.9 4.0 55 1109-1163 29-90 (274)
77 d1e32a2 c.37.1.20 (A:201-458) 54.5 4.7 0.00034 44.6 4.9 41 1110-1156 39-79 (258)
78 d1ls1a2 c.37.1.10 (A:89-295) G 52.7 8.9 0.00065 41.5 6.7 49 1113-1164 14-62 (207)
79 d1fnna2 c.37.1.20 (A:1-276) CD 50.6 13 0.00098 39.2 7.7 42 1092-1133 21-67 (276)
80 d1p9ra_ c.37.1.11 (A:) Extrace 48.0 18 0.0013 42.3 8.9 46 1086-1134 137-183 (401)
81 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 47.4 11 0.00079 45.3 7.0 56 1090-1151 11-67 (623)
82 d2b8ta1 c.37.1.24 (A:11-149) T 44.7 17 0.0012 37.0 6.9 35 1113-1150 6-40 (139)
83 d1w44a_ c.37.1.11 (A:) NTPase 43.8 11 0.0008 43.4 5.9 40 1110-1153 123-163 (321)
84 d1j8yf2 c.37.1.10 (F:87-297) G 41.7 17 0.0012 39.4 6.7 48 1113-1163 16-63 (211)
85 d1ofha_ c.37.1.20 (A:) HslU {H 38.8 11 0.00082 42.5 4.9 38 1108-1151 48-85 (309)
86 d1g6oa_ c.37.1.11 (A:) Hexamer 38.5 17 0.0012 41.6 6.4 124 1097-1262 154-277 (323)
87 d1ixsb2 c.37.1.20 (B:4-242) Ho 37.7 22 0.0016 37.7 6.9 24 1110-1133 36-59 (239)
88 d2eyqa2 c.37.1.19 (A:349-465) 37.7 10 0.00074 37.5 3.7 77 1413-1507 24-100 (117)
89 d1gkub1 c.37.1.16 (B:1-250) He 35.5 41 0.003 35.7 8.6 91 1408-1503 68-168 (237)
90 d1in4a2 c.37.1.20 (A:17-254) H 31.8 25 0.0018 37.2 6.0 24 1110-1133 36-59 (238)
91 d1tf7a2 c.37.1.11 (A:256-497) 31.2 34 0.0025 35.9 7.0 50 1110-1162 27-76 (242)
92 d2i3ba1 c.37.1.11 (A:1-189) Ca 29.6 28 0.0021 34.1 5.6 38 1110-1149 2-39 (189)
93 d1c4oa2 c.37.1.19 (A:410-583) 27.2 80 0.0058 33.1 8.9 90 1128-1225 19-110 (174)
94 d1w5sa2 c.37.1.20 (A:7-293) CD 27.0 23 0.0017 37.5 4.6 45 1092-1136 21-73 (287)
95 d1qopa_ c.1.2.4 (A:) Trp synth 26.1 83 0.006 35.0 9.3 143 1414-1562 3-181 (267)
96 d1tf7a1 c.37.1.11 (A:14-255) C 25.7 49 0.0035 33.9 6.8 45 1109-1155 26-70 (242)
97 d1u0sy_ c.23.1.1 (Y:) CheY pro 24.1 55 0.004 31.5 6.5 57 1425-1485 24-81 (118)
98 d1peya_ c.23.1.1 (A:) Sporulat 24.0 50 0.0037 31.8 6.2 57 1425-1485 24-80 (119)
99 d1xpja_ c.108.1.18 (A:) Hypoth 23.3 32 0.0023 34.5 4.5 45 1413-1457 27-84 (124)
100 d1byia_ c.37.1.10 (A:) Dethiob 20.6 43 0.0031 34.1 5.1 33 1113-1148 6-38 (224)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=3.5e-39 Score=388.31 Aligned_cols=237 Identities=34% Similarity=0.548 Sum_probs=203.5
Q ss_pred HHh-hcCccceeEeeeccccHHHHHHHHHHHHHhhccCC----CCCcchhHHHHHHHHhhCCccccchhhhhh-------
Q 000047 1326 KVE-NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGN----SKGRSVHNSVMELRNICNHPYLSQLHAEEV------- 1393 (2693)
Q Consensus 1326 DVe-keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~----sk~rslln~LmqLRKICnHPyL~~~~~EEi------- 1393 (2693)
+|. ++||+|++++++|+|++.|+.+|+.+......... .....+++.++.||++||||+|+.......
T Consensus 3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~ 82 (346)
T d1z3ix1 3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGA 82 (346)
T ss_dssp GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTG
T ss_pred hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccccch
Confidence 444 68999999999999999999999998765432211 122357888999999999999865332211
Q ss_pred hccCCCCC--CChhhhcccHHHHHHHHHHHhh-cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHH
Q 000047 1394 DTLIPKHY--LPPIVRLCGKLEMLDRLLPKLK-ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALID 1470 (2693)
Q Consensus 1394 d~li~~~~--l~~Lvr~SgKLelLdeLL~kLk-atGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId 1470 (2693)
....+..+ .......|+|+.+|.++|..+. ..|+||||||+|+.++++|+++|..+|+.|++|+|+++..+|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~ 162 (346)
T d1z3ix1 83 LDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVE 162 (346)
T ss_dssp GGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHH
T ss_pred hhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHH
Confidence 11111111 1233567999999999998875 67899999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1471 KFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1471 ~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
+||.++.+.+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||||++.+||||+|++++..
T Consensus 163 ~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~ 242 (346)
T d1z3ix1 163 RFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242 (346)
T ss_dssp HHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred hhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 99998887889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccC
Q 000047 1551 KLGVANQSITAG 1562 (2693)
Q Consensus 1551 Kl~Li~kVIqaG 1562 (2693)
|..+++.+++.+
T Consensus 243 K~~l~~~v~~~~ 254 (346)
T d1z3ix1 243 KKALSSCVVDEE 254 (346)
T ss_dssp HHHTSCCCCSCS
T ss_pred HHHHHHHHhCCc
Confidence 999999999765
No 2
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=1.2e-38 Score=360.40 Aligned_cols=225 Identities=34% Similarity=0.677 Sum_probs=196.4
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEIN 1160 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfe 1160 (2693)
.+|..+. .+|+|||++||.||..+...+.|||||||||||||+++|+++.++..... ..++|||||.+++.||.+|+.
T Consensus 4 ~~P~~~~-~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~-~~~~LIv~p~~l~~~W~~e~~ 81 (230)
T d1z63a1 4 LEPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSVLKNWEEELS 81 (230)
T ss_dssp CCCCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTTHHHHHHHHH
T ss_pred cCchhhh-cchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhccc-ccccceecchhhhhHHHHHHH
Confidence 4677776 58999999999999999999999999999999999999999988876544 457999999999999999999
Q ss_pred HHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh
Q 000047 1161 FWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY 1240 (2693)
Q Consensus 1161 KwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L 1240 (2693)
+|++...+..+...... ....+++|+|++|+.+.+. ..+...+|++||+||||++||..+..++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~--------~~~~~~~vvi~~~~~~~~~---~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l 150 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRD---TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL 150 (230)
T ss_dssp HHCTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTC---HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS
T ss_pred hhcccccceeeccccch--------hhccCcCEEEeeHHHHHhH---HHHhcccceEEEEEhhhcccccchhhhhhhhhh
Confidence 99998888877654322 2345789999999999763 357888999999999999999999999999999
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVL 1320 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLL 1320 (2693)
.+.+||+|||||++|++.|||++++||+|..|++...|...|..++.... .....+|+.+|++|++
T Consensus 151 ~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~--------------~~~~~~L~~~l~~~~l 216 (230)
T d1z63a1 151 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD--------------NMAKEELKAIISPFIL 216 (230)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC--------------HHHHHHHHHHHTTTEE
T ss_pred ccceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccC--------------HHHHHHHHHHhhccEE
Confidence 99999999999999999999999999999999999999999987765431 1235679999999999
Q ss_pred hhhHhH--HhhcCc
Q 000047 1321 RRLKHK--VENELP 1332 (2693)
Q Consensus 1321 RRtKkD--VekeLP 1332 (2693)
||+|.| |..+||
T Consensus 217 Rr~K~d~~v~~dLP 230 (230)
T d1z63a1 217 RRTKYDKAIINDLP 230 (230)
T ss_dssp CCCTTCHHHHTTSC
T ss_pred EEecCCccHhhcCC
Confidence 999998 577887
No 3
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=1.5e-38 Score=373.11 Aligned_cols=230 Identities=28% Similarity=0.479 Sum_probs=188.6
Q ss_pred CcchHHHHHHHHHHHHHh-----hcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCC----CCEEEEecCchHHHHHHHH
Q 000047 1089 GKLREYQMSGLRWLVSLY-----NNQLNGILADEMGLGKTVQVIALICYLMETKNDR----GPFLVVVPSSVLPGWESEI 1159 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy-----~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~----gP~LIVVPtSLL~QW~eEf 1159 (2693)
..|||||++||+||+.++ .++.|||||||||||||+|+|+++.+++...... +++|||||.+++.||.+||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 589999999999998865 3567899999999999999999999998776543 4699999999999999999
Q ss_pred HHHCCC-CcEEEEcCChHHHH-HHHHhhh----hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchH
Q 000047 1160 NFWAPR-IHKIVYCGPPEERR-RLFKEKI----VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKL 1233 (2693)
Q Consensus 1160 eKwaPs-LkVIvy~Gs~~eRk-~l~ke~i----~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKl 1233 (2693)
.+|++. ..++.++|....+. ....... ....++|+|+||+.+.+. ...+..++|++|||||||++||..++.
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~--~~~l~~~~~~~vI~DEaH~ikn~~s~~ 211 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH--AEVLHKGKVGLVICDEGHRLKNSDNQT 211 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH--TTTTTTSCCCEEEETTGGGCCTTCHHH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccc--hhcccccceeeeecccccccccccchh
Confidence 999974 55666666544332 2222211 223568999999999874 457888999999999999999999999
Q ss_pred HHHHHhhcccccccccccCCCCCHHHHHHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHH
Q 000047 1234 NADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQ 1313 (2693)
Q Consensus 1234 sraLk~Lka~~RLLLTGTPLQNnLeELwSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhk 1313 (2693)
++++..+++.+||+|||||++|++.|||++++||+|+.|++...|.++|..|+.......... .........+.+|+.
T Consensus 212 ~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~--~~~~~~~~~l~~L~~ 289 (298)
T d1z3ix2 212 YLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD--KDRAAGEQKLQELIS 289 (298)
T ss_dssp HHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS--HHHHHHHHHHHHHHH
T ss_pred hhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876644332211 122233345778999
Q ss_pred Hhhhhhhhh
Q 000047 1314 VLRPFVLRR 1322 (2693)
Q Consensus 1314 VLrPFLLRR 1322 (2693)
+|+||+|||
T Consensus 290 ~l~~~~lRR 298 (298)
T d1z3ix2 290 IVNRCLIRR 298 (298)
T ss_dssp HHHHHEECC
T ss_pred HhhhheeCC
Confidence 999999997
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=1.4e-35 Score=339.00 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=175.8
Q ss_pred ceeEeeeccccHHHHHHHHHHHHHhhc-cCCC----CCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhc
Q 000047 1334 KIERLVRCEASAYQKLLMKRVEENLGS-IGNS----KGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRL 1408 (2693)
Q Consensus 1334 KiE~vV~ceLSa~Qk~LYk~Lee~l~s-i~~s----k~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~ 1408 (2693)
|+|+.++|+|++.|+.+|+.+...+.. +... ....++..+++||++|+||+++.... ..+..
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~-------------~~~~~ 67 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE-------------QSVRR 67 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC-------------CCSTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhcCCccccccc-------------cchhh
Confidence 678999999999999999988765432 2211 12245788999999999999864321 23456
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK-QYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~r-GikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
|+|+..|.++|.++...|+||||||+|+.++++|+.+|... |+.+.+|+|+++.++|++++++|+++. .+.+||+++.
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vll~~~~ 146 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSVK 146 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEECC
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccc-cchhcccccc
Confidence 89999999999999999999999999999999999999754 899999999999999999999998754 3678999999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
++|+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+||+|++++..|..+++.+++++
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSG 221 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGT
T ss_pred ccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999764
No 5
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.81 E-value=8.8e-21 Score=209.94 Aligned_cols=193 Identities=11% Similarity=0.138 Sum_probs=139.4
Q ss_pred hcCccceeEeeeccccHHHHHHHHHHHHHhhccCCCCCc---chhHHHHHHHHhhCCccccchhh--hhhhccCCCCCCC
Q 000047 1329 NELPEKIERLVRCEASAYQKLLMKRVEENLGSIGNSKGR---SVHNSVMELRNICNHPYLSQLHA--EEVDTLIPKHYLP 1403 (2693)
Q Consensus 1329 keLP~KiE~vV~ceLSa~Qk~LYk~Lee~l~si~~sk~r---slln~LmqLRKICnHPyL~~~~~--EEid~li~~~~l~ 1403 (2693)
+.||+.....+.++|++.++..|+.+............. ........++..+.++....... .+.. .
T Consensus 1 k~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (200)
T d2fwra1 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEAR--------R 72 (200)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHH--------H
T ss_pred CcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHH--------H
Confidence 368999999999999999999998765443221111100 00000000111111111100000 0000 0
Q ss_pred hhhhcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1404 PIVRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1404 ~Lvr~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.....+.|++.|.++|.+. .++|+||||++..+++.|.+.|. +..++|.++.++|++++++|++++.. +|
T Consensus 73 i~~~~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~---vL 142 (200)
T d2fwra1 73 IAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AI 142 (200)
T ss_dssp HHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BC
T ss_pred HhhCcHHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCee---ee
Confidence 0123457999999999874 47899999999999999988774 33479999999999999999877655 57
Q ss_pred eeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcc-cEEEEEEEeCCC
Q 000047 1484 LSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKR-DVLVLRFETVQT 1539 (2693)
Q Consensus 1484 LSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkK-eV~VyRLIT~gS 1539 (2693)
++|+++++||||+.|++||+||++|||..++||+||+||+||.+ .|+||+||+.+|
T Consensus 143 v~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 143 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred eecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 89999999999999999999999999999999999999999975 599999999987
No 6
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.77 E-value=2.3e-19 Score=208.09 Aligned_cols=131 Identities=15% Similarity=0.249 Sum_probs=116.2
Q ss_pred ccHHHHHHHHHHHhh--cCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCC--------CCHHHHHHHHHHHhCCCCC
Q 000047 1409 CGKLEMLDRLLPKLK--ATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGH--------TSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1409 SgKLelLdeLL~kLk--atGhKVLIFSQft~tLDILed~L~~rGikylRLDGS--------TS~eERqeiId~FN~~dSd 1478 (2693)
++|++.|.++|.++. ..++|+||||+++.+++++.++|...|+++..++|. ++..+|..+++.|+++..+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 469999999988763 457899999999999999999999999999999885 4455899999999987655
Q ss_pred ceEEEeeecccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
+||+|+++++||||+.|++||+||++|||..|+||+||++|. +++.||.|++.+|+||++|
T Consensus 222 ---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~---~~~~~~~l~~~~~~ee~~~ 282 (286)
T d1wp9a2 222 ---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH---MPGRVIILMAKGTRDEAYY 282 (286)
T ss_dssp ---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC---CCSEEEEEEETTSHHHHHH
T ss_pred ---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC---CCCEEEEEEeCCCHHHHHH
Confidence 799999999999999999999999999999999999998884 4678999999999999875
No 7
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.76 E-value=1.4e-18 Score=188.94 Aligned_cols=135 Identities=20% Similarity=0.257 Sum_probs=119.9
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+..|.++|.+. .+.|+||||++..+++.|..+|...|+.+..++|.++..+|..+++.|+.+... +|++|+
T Consensus 16 ~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~Td 90 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSD 90 (171)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESS
T ss_pred HHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccchh
Confidence 346999999999864 468999999999999999999999999999999999999999999999988776 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
++++|||++.+++||+||+|||+..|+||+||++|.|+.. .+|.|++.+ |..++...+++
T Consensus 91 ~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~v~~~--e~~~~~~i~~~ 150 (171)
T d1s2ma2 91 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN--DRFNLYKIEQE 150 (171)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG--GHHHHHHHHHH
T ss_pred HhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCcc--EEEEEeCHH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 456677765 55555555544
No 8
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.74 E-value=3.9e-18 Score=185.42 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=120.3
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI 1486 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST 1486 (2693)
..+.|+.+|.++|..+ .+.|+||||++...++.|.++|...|+.+..+||+++.++|..+++.|+.++.. +||+|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 3467999999999876 367999999999999999999999999999999999999999999999988766 79999
Q ss_pred cccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 000047 1487 RAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHKL 1552 (2693)
Q Consensus 1487 rAGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekKl 1552 (2693)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..+ |.|++. .-|..++..++.++
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~~ 147 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD-ENDAKILNDVQDRF 147 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS-HHHHHHHHHHHHHH
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEE--EEEECc-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986544 556654 33556666655543
No 9
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.74 E-value=1.7e-18 Score=192.90 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=110.5
Q ss_pred cCCCccCCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHH
Q 000047 1081 EQPTCLQGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEI 1159 (2693)
Q Consensus 1081 eqP~~L~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEf 1159 (2693)
..|..-...+|||||.+++++++. +.+|||+++||+|||++++.++..+ .+++|||||. .++.||.++|
T Consensus 61 ~~~~~~~~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~ 130 (206)
T d2fz4a1 61 PTPYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERL 130 (206)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHH
Confidence 344444457899999999987753 6689999999999999998877654 3569999996 5678999999
Q ss_pred HHHCCCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHh
Q 000047 1160 NFWAPRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKH 1239 (2693)
Q Consensus 1160 eKwaPsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~ 1239 (2693)
.+|.+. .+..+.|.. .....++|+||+.+..... ....+|++|||||||++++. .+.+.+..
T Consensus 131 ~~~~~~-~~~~~~~~~------------~~~~~i~i~t~~~~~~~~~---~~~~~~~lvIiDEaH~~~a~--~~~~i~~~ 192 (206)
T d2fz4a1 131 GIFGEE-YVGEFSGRI------------KELKPLTVSTYDSAYVNAE---KLGNRFMLLIFDEVHHLPAE--SYVQIAQM 192 (206)
T ss_dssp GGGCGG-GEEEESSSC------------BCCCSEEEEEHHHHHHTHH---HHTTTCSEEEEECSSCCCTT--THHHHHHT
T ss_pred Hhhccc-chhhccccc------------ccccccccceehhhhhhhH---hhCCcCCEEEEECCeeCCcH--HHHHHHhc
Confidence 998754 455565532 1345799999999876322 22347999999999999754 35567777
Q ss_pred hcccccccccccC
Q 000047 1240 YQSSHRLLLTGTP 1252 (2693)
Q Consensus 1240 Lka~~RLLLTGTP 1252 (2693)
+.+.++|+||||+
T Consensus 193 ~~~~~~lgLTATl 205 (206)
T d2fz4a1 193 SIAPFRLGLTATF 205 (206)
T ss_dssp CCCSEEEEEEESC
T ss_pred cCCCcEEEEecCC
Confidence 8899999999997
No 10
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.73 E-value=1.2e-17 Score=180.78 Aligned_cols=123 Identities=20% Similarity=0.298 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+++|.+++..+ ...|+||||++...++.|..+|...|+.+..++|.++..+|.++++.|+.++.. +|++|++
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Tdv 86 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 86 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeecccc
Confidence 45999999999865 467999999999999999999999999999999999999999999999988776 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
+++|||++.+++||+||+|||+..|+||+||++|.|++. .++.|++..
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g--~~i~~~~~~ 134 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNE 134 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETT
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCcc--EEEEEcCHH
Confidence 999999999999999999999999999999999999854 566667765
No 11
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.73 E-value=6.1e-18 Score=181.09 Aligned_cols=133 Identities=20% Similarity=0.267 Sum_probs=115.9
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+++|.++|.. .+.++||||++..+++.|..+|...|+....++|.++..+|..++++|+.+... +|++|++
T Consensus 14 ~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~~ 87 (155)
T d1hv8a2 14 NERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATDV 87 (155)
T ss_dssp GGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECTT
T ss_pred HHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehhH
Confidence 4699999998864 467899999999999999999999999999999999999999999999988766 7999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
+++|||++.+++||+||+|||+..|+||+||++|.|++.. +|.|+... |+..+...+++
T Consensus 88 ~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~--~i~~~~~~--d~~~~~~i~~~ 146 (155)
T d1hv8a2 88 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK--AISIINRR--EYKKLRYIERA 146 (155)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCE--EEEEECTT--SHHHHHHHHHH
T ss_pred HhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCce--EEEEEchH--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 44556554 45555544433
No 12
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=3.6e-17 Score=177.99 Aligned_cols=133 Identities=18% Similarity=0.304 Sum_probs=117.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.++|..+ .+.++||||+....++.+..+|...|+.+..++|.++.++|..+++.|+++..+ +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccch
Confidence 35999999999765 467999999999999999999999999999999999999999999999988877 8999999
Q ss_pred cccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1489 GGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
+++|||++.+++||+||+||++..|+||+||++|.|++. .+|.|++.. |..++...+.
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G--~~i~~~~~~--d~~~~~~i~~ 151 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND--DIRILRDIEQ 151 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG--GHHHHHHHHH
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCc--EEEEEECHH--HHHHHHHHHH
Confidence 999999999999999999999999999999999999754 556677765 4445544433
No 13
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.70 E-value=1.3e-17 Score=191.74 Aligned_cols=262 Identities=16% Similarity=0.170 Sum_probs=162.6
Q ss_pred hhcCCCeEEEcCCCCChHHHHH-HHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Q 000047 1106 YNNQLNGILADEMGLGKTVQVI-ALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVYCGPPEERRRLFK 1183 (2693)
Q Consensus 1106 y~n~lnGILADEMGLGKTIQAI-ALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~k 1183 (2693)
+.++.+.||...||+|||++++ +++...+.. ...+|||+|+..| .||.++|...........+.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~---~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~----------- 71 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR---GLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR----------- 71 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc---CCEEEEEccHHHHHHHHHHHHhcCCcceeeeEEe-----------
Confidence 4567889999999999997665 333333332 2348999998555 77888876554322211111
Q ss_pred hhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh---cccccccccccCCCCCHHHH
Q 000047 1184 EKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY---QSSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1184 e~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L---ka~~RLLLTGTPLQNnLeEL 1260 (2693)
........++++|+..+...... .....++++|||||||++-.........+..+ .....+++|||+.....
T Consensus 72 -~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~--- 146 (305)
T d2bmfa2 72 -AEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRD--- 146 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHTS-SSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC---
T ss_pred -ecccCccccccCCcHHHHHHHhc-CccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCccee---
Confidence 11224568999999988664332 22234689999999999865443333333322 23456889999831100
Q ss_pred HHHhhhccCCCCCChhHHHHHhcCcccCCCCCCchhhhhHHHHHHHHHHHHHHHhhhhhhhhhHhHHhhcCccceeEeee
Q 000047 1261 WALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVR 1340 (2693)
Q Consensus 1261 wSLLnFL~P~iF~S~k~F~e~F~kP~e~~g~~s~~e~~LseEe~lliI~RLhkVLrPFLLRRtKkDVekeLP~KiE~vV~ 1340 (2693)
.+.. ...|.. .....
T Consensus 147 ------------------------~~~~----------------------------------------~~~~~~-~~~~~ 161 (305)
T d2bmfa2 147 ------------------------PFPQ----------------------------------------SNAPIM-DEERE 161 (305)
T ss_dssp ------------------------SSCC----------------------------------------CSSCEE-EEECC
T ss_pred ------------------------eecc----------------------------------------cCCcce-EEEEe
Confidence 0000 000000 00000
Q ss_pred ccccHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHhhCCccccchhhhhhhccCCCCCCChhhhcccHHHHHHHHHH
Q 000047 1341 CEASAYQKLLMKRVEENLGSIGNSKGRSVHNSVMELRNICNHPYLSQLHAEEVDTLIPKHYLPPIVRLCGKLEMLDRLLP 1420 (2693)
Q Consensus 1341 ceLSa~Qk~LYk~Lee~l~si~~sk~rslln~LmqLRKICnHPyL~~~~~EEid~li~~~~l~~Lvr~SgKLelLdeLL~ 1420 (2693)
+. ...... .+.
T Consensus 162 ~~--------------------------------------------------------~~~~~~-------------~~~ 172 (305)
T d2bmfa2 162 IP--------------------------------------------------------ERSWNS-------------GHE 172 (305)
T ss_dssp CC--------------------------------------------------------CSCCSS-------------CCH
T ss_pred cc--------------------------------------------------------HHHHHH-------------HHH
Confidence 00 000000 011
Q ss_pred HhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCE
Q 000047 1421 KLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADT 1500 (2693)
Q Consensus 1421 kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADt 1500 (2693)
.+...++++||||.....++.+..+|...|+++..++|.+....| ..|..+... +|++|++++.|+|+ .+++
T Consensus 173 ~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~---~lvaT~~~~~G~~~-~~~~ 244 (305)
T d2bmfa2 173 WVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWD---FVVTTDISEMGANF-KAER 244 (305)
T ss_dssp HHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCS---EEEECGGGGTTCCC-CCSE
T ss_pred HHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchh---hhhhhHHHHhcCCC-CccE
Confidence 123456799999999999999999999999999999998865443 456655544 79999999999999 5666
Q ss_pred EE----------EecCC----------CCccchhhhhhhhcccCCccc
Q 000047 1501 VI----------IFDTD----------WNPQVDLQAQARAHRIGQKRD 1528 (2693)
Q Consensus 1501 VI----------iyDpp----------WNP~~diQAIGRAHRIGQkKe 1528 (2693)
|| +||.+ -++..|+|++||++|.|+...
T Consensus 245 Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 245 VIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred EEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 65 34443 356778999999999998764
No 14
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=1.9e-16 Score=172.24 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=110.4
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.+|.++|..+ ...++||||++...++.|..+|...|+++..++|.++.++|.+++++|+.+... +|++|++
T Consensus 17 ~~K~~~L~~ll~~~--~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~---ilv~Td~ 91 (168)
T d2rb4a1 17 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNV 91 (168)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCS
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCCcee---eeechhh
Confidence 35899999999754 467999999999999999999999999999999999999999999999988765 7899999
Q ss_pred cccccCccccCEEEEecCCCC------ccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 000047 1489 GGVGVNLQAADTVIIFDTDWN------PQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEH 1550 (2693)
Q Consensus 1489 GGeGLNLQaADtVIiyDppWN------P~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraek 1550 (2693)
+++|||++.+++||+||+||+ +..|+||+||++|.|+ ...+|.|++.+ |+..+...+.
T Consensus 92 ~~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~--~g~~i~~~~~~--d~~~l~~i~~ 155 (168)
T d2rb4a1 92 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK--KGLAFNMIEVD--ELPSLMKIQD 155 (168)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C--CEEEEEEECGG--GHHHHHHHHH
T ss_pred hhhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCC--ceEEEEEEcHH--HHHHHHHHHH
Confidence 999999999999999999996 4679999999999996 45667788877 3444444433
No 15
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.66 E-value=4.3e-17 Score=190.32 Aligned_cols=162 Identities=13% Similarity=0.157 Sum_probs=115.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCC--
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPR-- 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPs-- 1165 (2693)
.+||+||.+++.+++. +.+|||+.+||+|||+++++++.++..... .++|||||. +|+.||.++|.+|...
T Consensus 112 ~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~~~--~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhccc--ceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 6899999999999876 568999999999999999888877765433 458999997 7789999999998643
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-cccc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-QSSH 1244 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-ka~~ 1244 (2693)
..+....+.... ........+++|+|++.+.+.. +.. ..+|++||+||||++++. .+...+..+ .+.+
T Consensus 186 ~~~~~~~~g~~~------~~~~~~~~~i~i~t~qs~~~~~-~~~--~~~f~~VIvDEaH~~~a~--~~~~il~~~~~~~~ 254 (282)
T d1rifa_ 186 AMIKKIGGGASK------DDKYKNDAPVVVGTWQTVVKQP-KEW--FSQFGMMMNDECHLATGK--SISSIISGLNNCMF 254 (282)
T ss_dssp GGEEECSTTCSS------TTCCCTTCSEEEECHHHHTTSC-GGG--GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCE
T ss_pred ccceeecceecc------cccccccceEEEEeeehhhhhc-ccc--cCCCCEEEEECCCCCCch--hHHHHHHhccCCCe
Confidence 233333222111 1112345689999999987632 222 246899999999998743 234455555 6789
Q ss_pred cccccccCCCCCHHHHHHHhhhcc
Q 000047 1245 RLLLTGTPLQNNLEELWALLNFLL 1268 (2693)
Q Consensus 1245 RLLLTGTPLQNnLeELwSLLnFL~ 1268 (2693)
||+|||||-..... .|.|..++.
T Consensus 255 rlGlTaT~~~~~~~-~~~l~g~~G 277 (282)
T d1rifa_ 255 KFGLSGSLRDGKAN-IMQYVGMFG 277 (282)
T ss_dssp EEEECSSCCTTSTT-HHHHHHHHC
T ss_pred EEEEEeecCCCCcc-eEEEeeecC
Confidence 99999999655543 355554443
No 16
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.66 E-value=3.5e-16 Score=170.63 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=119.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaP--s 1165 (2693)
.++|+||.++++++. +.|+|++++||+|||++++.++.+++... .+++|||||. .++.||.++|.+|+. .
T Consensus 8 ~~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~~--~~~il~i~P~~~L~~q~~~~~~~~~~~~~ 80 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (200)
T ss_dssp HCCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHHS--CSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHhc--CCcEEEEcCchHHHHHHHHHHHHhhcccc
Confidence 368999999999874 35799999999999999887776665543 3569999997 666899999999974 5
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH---hhcc
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK---HYQS 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk---~Lka 1242 (2693)
.++..+.+......+. ......+++++|++.+........+...+|++||+||||++.+.......... ....
T Consensus 81 ~~v~~~~~~~~~~~~~----~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~ 156 (200)
T d1wp9a1 81 EKIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (200)
T ss_dssp GGEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred cceeeeecccchhHHH----HhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCC
Confidence 6677776654433211 11235689999999998755555566668999999999999876543332211 2233
Q ss_pred cccccccccCCCCCHHHHHHHhhhcc
Q 000047 1243 SHRLLLTGTPLQNNLEELWALLNFLL 1268 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeELwSLLnFL~ 1268 (2693)
.+.|+||||| .+...++..++..+.
T Consensus 157 ~~~l~~SATp-~~~~~~~~~~~~~l~ 181 (200)
T d1wp9a1 157 PLVIGLTASP-GSTPEKIMEVINNLG 181 (200)
T ss_dssp CCEEEEESCS-CSSHHHHHHHHHHTT
T ss_pred CcEEEEEecC-CCcHHHHHHHHhcCC
Confidence 4568899999 345555555555443
No 17
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.60 E-value=1.9e-15 Score=168.84 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|++.|.++|... .+.++||||+....++.|..+|...|+.+..++|+++.++|.++++.|+.+... +||+|+
T Consensus 14 ~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaTd 88 (200)
T d1oywa3 14 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATV 88 (200)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECT
T ss_pred CCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEecc
Confidence 345888888888754 467999999999999999999999999999999999999999999999988876 899999
Q ss_pred ccccccCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEE
Q 000047 1488 AGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLV 1531 (2693)
Q Consensus 1488 AGGeGLNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~V 1531 (2693)
++|+|||++++++||+||+|||+..|+|++||++|.|+...+.+
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~ 132 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 132 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEE
Confidence 99999999999999999999999999999999999997654433
No 18
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.54 E-value=2.4e-14 Score=157.80 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccc
Q 000047 1411 KLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGG 1490 (2693)
Q Consensus 1411 KLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGG 1490 (2693)
+.+-|...+.+....++++||||.....++.|..+|...|+++..+||.+++++|.+++++|+++..+ +||+|++++
T Consensus 16 qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~ 92 (181)
T d1t5la2 16 QIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLR 92 (181)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCS
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHH
Confidence 33333333444455688999999999999999999999999999999999999999999999999887 899999999
Q ss_pred cccCccccCEEEEecCC-----CCccchhhhhhhhcccCCc
Q 000047 1491 VGVNLQAADTVIIFDTD-----WNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1491 eGLNLQaADtVIiyDpp-----WNP~~diQAIGRAHRIGQk 1526 (2693)
+|||++.+++||+||+| +++..|+||+||++|.|..
T Consensus 93 rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp SSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred ccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 99999999999999999 4788899999999999864
No 19
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.50 E-value=4.1e-14 Score=155.13 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=96.2
Q ss_pred HHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCcccc
Q 000047 1419 LPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAA 1498 (2693)
Q Consensus 1419 L~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaA 1498 (2693)
+.+..+.|+++||||....+++.|..+|...|++...|||.++..+|.+++++|++++.+ +|++|+++++|||++++
T Consensus 24 i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~V 100 (174)
T d1c4oa2 24 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEV 100 (174)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTE
T ss_pred HHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCCC
Confidence 444456799999999999999999999999999999999999999999999999998877 89999999999999999
Q ss_pred CEEEEecCCC-----CccchhhhhhhhcccCCc
Q 000047 1499 DTVIIFDTDW-----NPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1499 DtVIiyDppW-----NP~~diQAIGRAHRIGQk 1526 (2693)
++||+||++. +...|+|++||++|-|..
T Consensus 101 ~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred cEEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 9999999875 446799999999998764
No 20
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.46 E-value=5.3e-14 Score=154.82 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc-hHHHHHHHHHHHCCC-Cc
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS-VLPGWESEINFWAPR-IH 1167 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS-LL~QW~eEfeKwaPs-Lk 1167 (2693)
.|+|||.+++..+.. +.++||+.+||+|||.+++..+.+.+.. .+.+|+|+|.. ++.+|.++|.+|++. ..
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~~---~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhhc---cCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 699999999988764 7899999999999999886555544332 34589999975 668899999988874 45
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhh---c-
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHY---Q- 1241 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~L---k- 1241 (2693)
+..+.|....+ .......+|+++|+..+.............+++||+||+|++.+.. ......+..+ .
T Consensus 98 v~~~~~~~~~~------~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~ 171 (202)
T d2p6ra3 98 IGISTGDYESR------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (202)
T ss_dssp EEEECSSCBCC------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred ceeeccCcccc------cccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCC
Confidence 55666654322 2234578899999988865433333334467999999999997653 2222233333 2
Q ss_pred ccccccccccCCCCCHHHH
Q 000047 1242 SSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1242 a~~RLLLTGTPLQNnLeEL 1260 (2693)
..++|+||||- . ++.+|
T Consensus 172 ~~~~l~lSATl-~-n~~~~ 188 (202)
T d2p6ra3 172 ALRVIGLSATA-P-NVTEI 188 (202)
T ss_dssp TCEEEEEECCC-T-THHHH
T ss_pred CCcEEEEcCCC-C-cHHHH
Confidence 34578999993 2 35554
No 21
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.39 E-value=6.3e-13 Score=149.55 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=108.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRI- 1166 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsL- 1166 (2693)
++++++|+.++..++. +.+.|+..+||+|||++++.++.++... .+.+|||+|+ .|+.||.++|++|+...
T Consensus 42 ~~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~~---~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 42 GEPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHHh---cCeEEEEeccHHHHHHHHHHHHHHHHHcC
Confidence 4678999999887765 8899999999999999877666655432 3458999997 56789999999986432
Q ss_pred -----cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-
Q 000047 1167 -----HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY- 1240 (2693)
Q Consensus 1167 -----kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L- 1240 (2693)
.+..+.+......+. ........++|+|+|++++.+..+ ...+|++|||||+|.|........+.+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~Ilv~Tp~~l~~~~~----~~~~~~~vVvDE~d~~l~~~~~~~~~~~~~g 189 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKE-NFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLG 189 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHH-HHHHSGGGCSEEEEEHHHHHHCST----TSCCCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred CceEEEEeeeecccchhhhh-hhhccccccceeccChHHHHHhhh----hcCCCCEEEEEChhhhhhcccchhHHHHhcC
Confidence 233344433222111 111223568999999999977432 224689999999999865544333333321
Q ss_pred -c------------ccccccccccCCCCCHHHHH-HHhhh
Q 000047 1241 -Q------------SSHRLLLTGTPLQNNLEELW-ALLNF 1266 (2693)
Q Consensus 1241 -k------------a~~RLLLTGTPLQNnLeELw-SLLnF 1266 (2693)
. ....+++|||.-......|+ .+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred ChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 0 11247789997554444444 34443
No 22
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.35 E-value=6.1e-13 Score=146.29 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=115.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC-chHHHHHHHHHHHCCCCc
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS-SVLPGWESEINFWAPRIH 1167 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLk 1167 (2693)
..|||||.+++..++. +.++|+...||+|||++++..+.. ..+..++|+|. .++.+|..+|..+.....
T Consensus 24 ~~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~ 93 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAA 93 (206)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhccccc
Confidence 4799999999987664 779999999999999887544432 24568999998 455779999998875443
Q ss_pred EEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-------HHHHHHhh
Q 000047 1168 KIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-------LNADLKHY 1240 (2693)
Q Consensus 1168 VIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-------lsraLk~L 1240 (2693)
.............. .........+++++|+..+........+...++.++|+||||.+...... ....+..+
T Consensus 94 ~~~~~~~~~~~~~~-~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~ 172 (206)
T d1oywa2 94 CLNSTQTREQQLEV-MTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (206)
T ss_dssp EECTTSCHHHHHHH-HHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC
T ss_pred ccccccccccchhH-HHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhC
Confidence 33333333333322 23345578899999999886543333455567899999999998764321 11222333
Q ss_pred cccccccccccCCCCCHHHHHHHhhhccC
Q 000047 1241 QSSHRLLLTGTPLQNNLEELWALLNFLLP 1269 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnLeELwSLLnFL~P 1269 (2693)
.....++||||+-....+|+...|.+-+|
T Consensus 173 ~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 173 PTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 45567899999732223567777766555
No 23
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.30 E-value=2.8e-12 Score=129.88 Aligned_cols=134 Identities=20% Similarity=0.185 Sum_probs=81.9
Q ss_pred HhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHh
Q 000047 1105 LYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPEERRRLFKE 1184 (2693)
Q Consensus 1105 Ly~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke 1184 (2693)
+++++.++||..+||+|||++++..+....... ...+||++|...+.+|..+. +....+-+......
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~-------- 69 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFS-------- 69 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCC--------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHHHHHH---hhhhhhhhcccccc--------
Confidence 466789999999999999999876655444333 23489999997775544332 22333332222110
Q ss_pred hhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHH---HHHHhhcccccccccccC
Q 000047 1185 KIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLN---ADLKHYQSSHRLLLTGTP 1252 (2693)
Q Consensus 1185 ~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKls---raLk~Lka~~RLLLTGTP 1252 (2693)
........+.++++..+.... .......+|++|||||||++........ ..+......+.|+|||||
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 70 AHGSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp CCCCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred cccccccchhhhhHHHHHHHH-hccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 111233456666666664432 2345566899999999999843322211 122234566789999999
No 24
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.23 E-value=1.1e-11 Score=127.88 Aligned_cols=125 Identities=21% Similarity=0.161 Sum_probs=83.8
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch-HHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHhhh
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV-LPGWESEINFWAPRIHKIVYCGPPEERRRLFKEKI 1186 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL-L~QW~eEfeKwaPsLkVIvy~Gs~~eRk~l~ke~i 1186 (2693)
.+..+||..+||+|||++++.++. . ....+||+||... ..||..+|.+|+.......+.+..
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~---~---~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~----------- 69 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA---A---QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT----------- 69 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---T---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH---H---cCCcEEEEcChHHHHHHHHHHHHHHhhccccccccccc-----------
Confidence 456789999999999987654432 1 2345999999855 578999999987655554444321
Q ss_pred hcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccch-HHHHHHhhc---ccccccccccC
Q 000047 1187 VHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCK-LNADLKHYQ---SSHRLLLTGTP 1252 (2693)
Q Consensus 1187 ~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSK-lsraLk~Lk---a~~RLLLTGTP 1252 (2693)
......+++++++.+..... . ...+|++|||||||++...... +...+..++ ....|+|||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 70 ITTGSPITYSTYGKFLADGG-C--SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp ECCCCSEEEEEHHHHHHTTG-G--GGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred cccccceEEEeeeeeccccc-h--hhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 12345688888888876432 2 2347899999999998654332 333333332 23458899999
No 25
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.17 E-value=3.1e-11 Score=139.77 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=114.7
Q ss_pred CcchHHHHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC-
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP- 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP- 1164 (2693)
.+|-+-|.++++-+..-+..+ .+.+|..+||+|||++++..+...+..+. -++++||+..| .||...|.+|++
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~---q~~~m~Pt~~La~Qh~~~~~~~f~~ 158 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQHYRRTVESFSK 158 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhccc---ceeEEeehHhhhHHHHHHHHHhhhh
Confidence 467888999999887765444 46799999999999999988887776653 37999998766 789999999997
Q ss_pred -CCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHH-Hhh
Q 000047 1165 -RIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADL-KHY 1240 (2693)
Q Consensus 1165 -sLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraL-k~L 1240 (2693)
++.+.+++|.. .+|..++ ..+..+..+|+|.|+..+..... -.+..+|||||-|++.-... ..+ ..-
T Consensus 159 ~~~~v~~l~~~~~~~~r~~~~-~~~~~g~~~iiIGThsl~~~~~~-----f~~LglviiDEqH~fgv~Qr---~~l~~~~ 229 (264)
T d1gm5a3 159 FNIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQEDVH-----FKNLGLVIIDEQHRFGVKQR---EALMNKG 229 (264)
T ss_dssp SSCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHCCC-----CSCCCEEEEESCCCC--------CCCCSSS
T ss_pred ccccceeeccccchHHHHHHH-HHHHCCCCCEEEeehHHhcCCCC-----ccccceeeeccccccchhhH---HHHHHhC
Confidence 45777777754 4455554 35667899999999999976322 12458999999999843221 111 111
Q ss_pred cccccccccccCCCCCH
Q 000047 1241 QSSHRLLLTGTPLQNNL 1257 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNnL 1257 (2693)
...+.|++||||+..++
T Consensus 230 ~~~~~l~~SATPiprtl 246 (264)
T d1gm5a3 230 KMVDTLVMSATPIPRSM 246 (264)
T ss_dssp SCCCEEEEESSCCCHHH
T ss_pred cCCCEEEEECCCCHHHH
Confidence 33567999999987664
No 26
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.15 E-value=6.8e-11 Score=131.50 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=112.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..+.|.|..++..+++ +.+.|+...+|+|||+.++..+.+.+.........||+||+..+ .|-.+++.++. .
T Consensus 24 ~~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 99 (206)
T d1veca_ 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhccc
Confidence 3678899999998885 88999999999999998887766555444444458999999776 44455555553 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS 1242 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka 1242 (2693)
.+....+.|........ .......+|+|+|++++........+...+..++||||||+|.+.. ..+...+..+..
T Consensus 100 ~~~~~~~~g~~~~~~~~---~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~ 176 (206)
T d1veca_ 100 GAKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK 176 (206)
T ss_dssp SCCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT
T ss_pred CcccccccCCccHHHHH---HHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCC
Confidence 56666666665443322 2234678999999999987666566666778899999999997643 334455555543
Q ss_pred -cccccccccC
Q 000047 1243 -SHRLLLTGTP 1252 (2693)
Q Consensus 1243 -~~RLLLTGTP 1252 (2693)
...+++|||-
T Consensus 177 ~~Q~~l~SAT~ 187 (206)
T d1veca_ 177 NRQILLYSATF 187 (206)
T ss_dssp TCEEEEEESCC
T ss_pred CCEEEEEEecC
Confidence 4467889995
No 27
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.15 E-value=8.5e-11 Score=130.62 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=108.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC--CCC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA--PRI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa--PsL 1166 (2693)
.+.|.|.+++..++. .+.+.|+...+|+|||+.++..+......... ...||+||+..+ .++...+..+. ...
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~-~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENNG-IEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSS-CCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccccccC-cceEEEeeccccchhhhhhhhhhcccCCe
Confidence 577899999987765 22477888999999999887776655433322 247999998655 66777777764 356
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~Lka-~ 1243 (2693)
++..+.|......+.. .+ .+.+|+|+|++.+.+......+...+..++||||||+|.+.. ..+.+.+..+.. .
T Consensus 102 ~v~~~~g~~~~~~~~~--~l--~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~ 177 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIK--AL--KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 177 (208)
T ss_dssp CEEEECTTSCHHHHHH--HH--HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred EEEEeeCCCChHHHHH--hc--CCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCC
Confidence 7788888765443321 11 357999999999876555555556677899999999986543 334455555543 4
Q ss_pred ccccccccC
Q 000047 1244 HRLLLTGTP 1252 (2693)
Q Consensus 1244 ~RLLLTGTP 1252 (2693)
..+++|||-
T Consensus 178 Q~i~~SAT~ 186 (208)
T d1hv8a1 178 RILLFSATM 186 (208)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEccC
Confidence 457889994
No 28
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.15 E-value=8.6e-11 Score=130.72 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=114.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHC---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWA---P 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwa---P 1164 (2693)
..+.|.|.+++..++. +.+.|+...+|+|||+.++..+...+.........||+||+..+ .|..+.+..+. +
T Consensus 22 ~~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~ 97 (207)
T d1t6na_ 22 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 97 (207)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCC
Confidence 3678899999998886 88999999999999998877666554443333458999998665 55666666665 4
Q ss_pred CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc-c--chHHHHHHhhc
Q 000047 1165 RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA-S--CKLNADLKHYQ 1241 (2693)
Q Consensus 1165 sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~-s--SKlsraLk~Lk 1241 (2693)
.++..++.|........ ........+|+|+|++++........+...+..++|+||||+|... . ..+...++.+.
T Consensus 98 ~~~~~~~~g~~~~~~~~--~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~ 175 (207)
T d1t6na_ 98 NVKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 175 (207)
T ss_dssp TCCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC
T ss_pred CceeEEEeccccHHHHH--HHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCC
Confidence 45667777765443322 1223457899999999998766555566667789999999998753 1 12233334443
Q ss_pred cc-ccccccccCCCCCHHHHHH
Q 000047 1242 SS-HRLLLTGTPLQNNLEELWA 1262 (2693)
Q Consensus 1242 a~-~RLLLTGTPLQNnLeELwS 1262 (2693)
.. ..+++|||- ...+.++..
T Consensus 176 ~~~Q~il~SAT~-~~~v~~l~~ 196 (207)
T d1t6na_ 176 HEKQVMMFSATL-SKEIRPVCR 196 (207)
T ss_dssp SSSEEEEEESCC-CTTTHHHHH
T ss_pred CCCEEEEEeeeC-CHHHHHHHH
Confidence 33 347779994 555555443
No 29
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.13 E-value=3.3e-12 Score=145.42 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeee---
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSI--- 1486 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLST--- 1486 (2693)
.|+..|..+|.++ |.++||||++..+++.|.++|... +||+++..+|.+++++|..++.+ +||+|
T Consensus 12 ~~~~~l~~~l~~~---~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a~ 79 (248)
T d1gkub2 12 ESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAHY 79 (248)
T ss_dssp CCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC-
T ss_pred hHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEeccc
Confidence 4677788888754 678999999999999999999853 79999999999999999988776 78888
Q ss_pred -cccccccCccc-cCEEEEecCCCCccchhhhhhhhcccCCc
Q 000047 1487 -RAGGVGVNLQA-ADTVIIFDTDWNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1487 -rAGGeGLNLQa-ADtVIiyDppWNP~~diQAIGRAHRIGQk 1526 (2693)
+++++|||++. +++||+||+|| +.|++||++|.|+.
T Consensus 80 ~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~ 117 (248)
T d1gkub2 80 YGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQ 117 (248)
T ss_dssp -----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHH
T ss_pred cchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcc
Confidence 77899999986 99999999998 66889999999864
No 30
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.13 E-value=1.7e-11 Score=129.63 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEEe
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVIIF 1504 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIiy 1504 (2693)
.+.++||||+....++.|.++|...|+....+||+++.++ |+++.. .+|++|+++++||| .+++.||+|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~~~~---~vlvaTd~~~~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPTNGD---VVVVATDALMTGFT-GDFDSVIDC 102 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTTSSC---EEEEESSSSCSSSC-CCBSEEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhh-------hhhhhc---ceeehhHHHHhccc-cccceEEEE
Confidence 4679999999999999999999999999999999998543 555544 38999999999999 899999986
Q ss_pred c----CCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1505 D----TDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1505 D----ppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
| +|+++..|+||+||++| |++- +|.|++.+
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred EecCCCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 5 68899999999999999 8654 46677654
No 31
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.09 E-value=1.8e-10 Score=129.90 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=111.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH-HHHHHHHHHC--CC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP-GWESEINFWA--PR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~-QW~eEfeKwa--Ps 1165 (2693)
..+.+.|..++.+++. +.+.|+...+|+|||+.++..+...+.........||+||+..+. |-.+++.+++ ..
T Consensus 38 ~~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 113 (222)
T d2j0sa1 38 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 113 (222)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccc
Confidence 3678899999999885 889999999999999988877665544333333479999997774 4566677765 35
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccc--hHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASC--KLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sS--KlsraLk~Lka- 1242 (2693)
+++..+.|.......... ...+.+|+|+|++++........+...+..++||||||+|.+... .+...+..+..
T Consensus 114 i~~~~~~g~~~~~~~~~~---l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~ 190 (222)
T d2j0sa1 114 VQCHACIGGTNVGEDIRK---LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPA 190 (222)
T ss_dssp CCEEEECTTSCHHHHHHH---HHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTT
T ss_pred eeEEEEeecccchhhHHH---hccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCC
Confidence 677777776554432221 124679999999999876555556666778999999999987543 34444445433
Q ss_pred cccccccccC
Q 000047 1243 SHRLLLTGTP 1252 (2693)
Q Consensus 1243 ~~RLLLTGTP 1252 (2693)
...+++|||-
T Consensus 191 ~Q~ilfSAT~ 200 (222)
T d2j0sa1 191 TQVVLISATL 200 (222)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEEEeC
Confidence 4457889994
No 32
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.08 E-value=6.1e-10 Score=126.77 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=114.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPs 1165 (2693)
..|-+-|..++.-+........ +-+|..+||+|||.+++..+...+..+ +-++|++|+..| .|+.+.|.++++.
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g---~qv~~l~Pt~~La~Q~~~~~~~~~~~ 130 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTTLLAQQHYDNFRDRFAN 130 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC---CceEEEccHHHhHHHHHHHHHHHHhh
Confidence 4677889999998887766554 569999999999999998887776543 348999998666 7799999999875
Q ss_pred --CcEEEEcCChH--HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHH-hh
Q 000047 1166 --IHKIVYCGPPE--ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLK-HY 1240 (2693)
Q Consensus 1166 --LkVIvy~Gs~~--eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk-~L 1240 (2693)
..+.++++... .+..++ ..+..+..+|||-|+..+... +.-.++.+|||||-|++.- +....++ ..
T Consensus 131 ~~~~v~~l~~~~~~~~~~~~~-~~~~~g~~~iviGths~l~~~-----~~f~~LgLiIiDEeH~fg~---kQ~~~l~~~~ 201 (233)
T d2eyqa3 131 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD-----VKFKDLGLLIVDEEHRFGV---RHKERIKAMR 201 (233)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC-----CCCSSEEEEEEESGGGSCH---HHHHHHHHHH
T ss_pred CCCEEEeccCcccchhHHHHH-HHHhCCCCCEEEeehhhhccC-----Cccccccceeeechhhhhh---HHHHHHHhhC
Confidence 46667777443 444443 456778999999999998652 2334578999999999632 2223333 23
Q ss_pred cccccccccccCCCCC
Q 000047 1241 QSSHRLLLTGTPLQNN 1256 (2693)
Q Consensus 1241 ka~~RLLLTGTPLQNn 1256 (2693)
...+.|++||||+.-+
T Consensus 202 ~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 202 ANVDILTLTATPIPRT 217 (233)
T ss_dssp TTSEEEEEESSCCCHH
T ss_pred CCCCEEEEecchhHHH
Confidence 4457899999997543
No 33
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.06 E-value=5.3e-10 Score=126.92 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=117.0
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC---------CCCCEEEEecCchH-HHHH
Q 000047 1087 QGGKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN---------DRGPFLVVVPSSVL-PGWE 1156 (2693)
Q Consensus 1087 ~ggkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~---------~~gP~LIVVPtSLL-~QW~ 1156 (2693)
....+.|.|..++..++. +.+.|+...+|+|||+..+..+...+.... ..-.+||+||+..+ .|+.
T Consensus 40 g~~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~ 115 (238)
T d1wrba1 40 SYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 115 (238)
T ss_dssp TCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchh
Confidence 345889999999998885 889999999999999998877665443221 11237999998655 6788
Q ss_pred HHHHHHCC--CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--ch
Q 000047 1157 SEINFWAP--RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CK 1232 (2693)
Q Consensus 1157 eEfeKwaP--sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SK 1232 (2693)
.++..+.. .+++..+.|......+. .......+|||+|++.|........+...++.++||||||+|-... ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~ 192 (238)
T d1wrba1 116 SESQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 192 (238)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred eeeeecccCCCcEEEEEeccchhhHHH---hhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHH
Confidence 88877754 46777777765433222 1234578999999999987665556666788999999999986543 34
Q ss_pred HHHHHHhhc-----ccccccccccCCCCCHHHHH
Q 000047 1233 LNADLKHYQ-----SSHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1233 lsraLk~Lk-----a~~RLLLTGTPLQNnLeELw 1261 (2693)
+.+.++.+. ....+++||| +..++.+|.
T Consensus 193 i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l~ 225 (238)
T d1wrba1 193 IRKIIEESNMPSGINRQTLMFSAT-FPKEIQKLA 225 (238)
T ss_dssp HHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCEEEEEeee-CCHHHHHHH
Confidence 555565542 1234889999 444444443
No 34
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.01 E-value=2.1e-10 Score=128.77 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=109.5
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--CC
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--RI 1166 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--sL 1166 (2693)
.+.+.|..++..++. +.+.|++..+|+|||+.++..+...+.........||+||+..+ .|-.+++.+++. .+
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 578899999998886 88999999999999999887776665444334448999999666 556677777653 34
Q ss_pred cEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-c
Q 000047 1167 HKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS-S 1243 (2693)
Q Consensus 1167 kVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka-~ 1243 (2693)
.+..+.+....... .........+|+|+|++++........+...+..++||||||+|.+. .......+..+.. .
T Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 110 SCHACIGGTNVRAE--VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp CEEEECC--CCCST--TTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEeeecccchhHH--HHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 45555443322111 11223356899999999998776555666677899999999999765 3344455556654 3
Q ss_pred ccccccccC
Q 000047 1244 HRLLLTGTP 1252 (2693)
Q Consensus 1244 ~RLLLTGTP 1252 (2693)
.++++|||=
T Consensus 188 Q~il~SAT~ 196 (218)
T d2g9na1 188 QVVLLSATM 196 (218)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEecC
Confidence 457778886
No 35
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.98 E-value=4.3e-10 Score=125.03 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhc------------------------------CCeEEEEeCCCCHHHHH
Q 000047 1417 RLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFK------------------------------QYRYLRLDGHTSGGDRG 1466 (2693)
Q Consensus 1417 eLL~kLkatGhKVLIFSQft~tLDILed~L~~r------------------------------GikylRLDGSTS~eERq 1466 (2693)
+++.++...++.+||||..+..++.+...|... ...+..+||+++.++|.
T Consensus 31 ~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~ 110 (201)
T d2p6ra4 31 ELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 110 (201)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHH
Confidence 444555566899999999987666555444320 01256689999999999
Q ss_pred HHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-------ecCCCCccchhhhhhhhcccCCcccEEEEEEEeCC
Q 000047 1467 ALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII-------FDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQ 1538 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi-------yDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~g 1538 (2693)
.+.+.|+++... +|++|.+++.|||++..++||. ++.++++..|.|++|||+|.|....-.+|.++...
T Consensus 111 ~ie~~f~~g~i~---vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 111 VVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHhCCCce---EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCC
Confidence 999999988766 7999999999999986666665 56668899999999999999987776777555554
No 36
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.97 E-value=1.3e-09 Score=120.54 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=112.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHH-HHHHHH--HHCCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPG-WESEIN--FWAPR 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~Q-W~eEfe--KwaPs 1165 (2693)
..+.|.|..++..++. +.+.|+..++|+|||+.++..+.+.+.........++++|...+.. -...+. ....+
T Consensus 22 ~~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (206)
T d1s2ma1 22 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 97 (206)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccC
Confidence 4678899999998876 7889999999999998886665555444444445788888866533 222222 22357
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka- 1242 (2693)
+++....|........ .......+|+|+|++++........+...+..++||||||+|.+. ...+...++.++.
T Consensus 98 ~~~~~~~g~~~~~~~~---~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~ 174 (206)
T d1s2ma1 98 ISCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 174 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSS
T ss_pred eeEEeecCccchhhHH---HHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCC
Confidence 7888888876544322 223467999999999998877666666667889999999999774 2334344444543
Q ss_pred cccccccccCCCCCHHH
Q 000047 1243 SHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeE 1259 (2693)
...+++|||- ..++.+
T Consensus 175 ~Q~il~SATl-~~~v~~ 190 (206)
T d1s2ma1 175 HQSLLFSATF-PLTVKE 190 (206)
T ss_dssp CEEEEEESCC-CHHHHH
T ss_pred CEEEEEEEeC-CHHHHH
Confidence 4467889994 333443
No 37
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.94 E-value=5.6e-10 Score=122.84 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwaP 1164 (2693)
..+.+.|.+++..++. +.+.|+..+||+|||+.++..+...+.........++++|...+. +|.....++..
T Consensus 22 ~~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (209)
T d1q0ua_ 22 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97 (209)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhcccc
Confidence 3688899999998886 889999999999999987766665554444445578888865543 34444444432
Q ss_pred ---CCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEcccccccccc--chHHHHHHh
Q 000047 1165 ---RIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNAS--CKLNADLKH 1239 (2693)
Q Consensus 1165 ---sLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~s--SKlsraLk~ 1239 (2693)
...+....+....... ......+.+|+|+|++.+........+...+.+++||||||++.+.. ..+...+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~ 174 (209)
T d1q0ua_ 98 KDRMIVARCLIGGTDKQKA---LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAAR 174 (209)
T ss_dssp GGGCCCEEEECCCSHHHHT---TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccccccchhhHHH---HHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHH
Confidence 2344444554433221 12234678999999999987655555556678899999999997754 234444455
Q ss_pred hcc-cccccccccCCCCCHHHHH
Q 000047 1240 YQS-SHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1240 Lka-~~RLLLTGTPLQNnLeELw 1261 (2693)
++. ...+++|||- .+.+.++.
T Consensus 175 ~~~~~Q~il~SATl-~~~v~~l~ 196 (209)
T d1q0ua_ 175 MPKDLQMLVFSATI-PEKLKPFL 196 (209)
T ss_dssp SCTTCEEEEEESCC-CGGGHHHH
T ss_pred CCCCCEEEEEEccC-CHHHHHHH
Confidence 533 4457889994 44454443
No 38
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.90 E-value=3.4e-09 Score=118.36 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=108.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCC--C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAP--R 1165 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaP--s 1165 (2693)
..+.+.|..++..++. +.+.|+...+|+|||+.++..+...+......-.+||+||+..+ .|-...+..... .
T Consensus 31 ~~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 106 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 106 (212)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhcccccccc
Confidence 4788899999988775 88999999999999998876665554433333347999998766 444445544432 4
Q ss_pred CcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccc--cchHHHHHHhhcc-
Q 000047 1166 IHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNA--SCKLNADLKHYQS- 1242 (2693)
Q Consensus 1166 LkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~--sSKlsraLk~Lka- 1242 (2693)
+.+....+......+. ....+.+|+|+|++.+........+...+.+++||||||+|.+. ...+.+.+..+..
T Consensus 107 ~~~~~~~~~~~~~~~~----~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~ 182 (212)
T d1qdea_ 107 IKVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 182 (212)
T ss_dssp CCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred cceeeEeeccchhHHH----HHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCC
Confidence 4555555544333221 12346799999999998876666666677899999999999764 3344455555543
Q ss_pred cccccccccCCCCCHHHH
Q 000047 1243 SHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1243 ~~RLLLTGTPLQNnLeEL 1260 (2693)
...+++|||- .+.+.+|
T Consensus 183 ~Q~vl~SAT~-~~~v~~l 199 (212)
T d1qdea_ 183 TQVVLLSATM-PNDVLEV 199 (212)
T ss_dssp CEEEEEESSC-CHHHHHH
T ss_pred CeEEEEEeeC-CHHHHHH
Confidence 3457889985 3344443
No 39
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.81 E-value=1.2e-09 Score=127.17 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=91.0
Q ss_pred CCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHH----------HHHHHHHhCCCCCceEEEeeeccccc---c
Q 000047 1426 DHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDR----------GALIDKFNQQDSPFFIFLLSIRAGGV---G 1492 (2693)
Q Consensus 1426 GhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eER----------qeiId~FN~~dSd~fVfLLSTrAGGe---G 1492 (2693)
+.|+||||+.+..++.|...|..+|++...+||+++.+.| .+++..|..++.+ +||.|++..+ |
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~d---vVVaT~~~a~g~~g 112 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD---SVIDCNTCVTQTVD 112 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBS---EEEECCEEEEEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCc---EEEEEeehhccCCC
Confidence 7899999999999999999999999999999999998876 4578888776655 6777777666 7
Q ss_pred cCccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHH
Q 000047 1493 VNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVR 1545 (2693)
Q Consensus 1493 LNLQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIl 1545 (2693)
+|+....+||+||.+.|...|+||+||++| |..- +|+|+...+-++.++
T Consensus 113 iDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t~p~~~l 161 (299)
T d1a1va2 113 FSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGERPSGMF 161 (299)
T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCCBCSCBC
T ss_pred CCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecCCCHHHHH
Confidence 778888899999999999999999999999 7432 455666655444333
No 40
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.77 E-value=7.4e-10 Score=124.03 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHhhcCCCeEEEEEcchHHHHH--------HHHHH-hh--cCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Q 000047 1410 GKLEMLDRLLPKLKATDHRVLFFSTMTRLLDV--------MEDYL-TF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSP 1478 (2693)
Q Consensus 1410 gKLelLdeLL~kLkatGhKVLIFSQft~tLDI--------Led~L-~~--rGikylRLDGSTS~eERqeiId~FN~~dSd 1478 (2693)
.|...+.+.+.+....|++|.|.|...+..+. ..+.| +. .++++..+||.|+.++|++++.+|.+++.+
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 36666777777767788898888876643332 22333 22 367888899999999999999999998888
Q ss_pred ceEEEeeecccccccCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEE
Q 000047 1479 FFIFLLSIRAGGVGVNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVL 1530 (2693)
Q Consensus 1479 ~fVfLLSTrAGGeGLNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~ 1530 (2693)
+||||.+.+.|||+++|++||++|.+ |....+.|..||++|-|.+--|+
T Consensus 93 ---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~ 142 (206)
T d1gm5a4 93 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 142 (206)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred ---EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeE
Confidence 89999999999999999999999998 58999999999999999876553
No 41
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.54 E-value=1.2e-07 Score=106.14 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred HHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhh--cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1415 LDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTF--KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1415 LdeLL~kLkatGhKVLIFSQft~tLDILed~L~~--rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
+.+.|.+-...|++|.+.|.....++.+.+.|.. .++++..+||.|+.+++++++.+|.+++.+ +||||.+...|
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~TtvIEvG 96 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETG 96 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGG
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEehhhhhc
Confidence 4444444456799999999998888888777754 578999999999999999999999999887 89999999999
Q ss_pred cCccccCEEEEecCC-CCccchhhhhhhhcccCCcccEEEEEEE
Q 000047 1493 VNLQAADTVIIFDTD-WNPQVDLQAQARAHRIGQKRDVLVLRFE 1535 (2693)
Q Consensus 1493 LNLQaADtVIiyDpp-WNP~~diQAIGRAHRIGQkKeV~VyRLI 1535 (2693)
||+++|+++|+++.+ |-..++.|-.||++|-+.. -++|-+.
T Consensus 97 iDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~--s~c~l~~ 138 (211)
T d2eyqa5 97 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLT 138 (211)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEE
T ss_pred cCCCCCcEEEEecchhccccccccccceeeecCcc--ceEEEEe
Confidence 999999999999998 6899999999999997654 3444333
No 42
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.08 E-value=3.1e-06 Score=99.06 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccccCccccCEEEE-
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVGVNLQAADTVII- 1503 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeGLNLQaADtVIi- 1503 (2693)
.+.++|||+.....++.|...|...|++++.|||.+..+++++ |.+++.+ |||+|++++.|||+ .+++||-
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~~---~~~~t~~~~~~~~~-~~~~vid~ 106 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPD---FILATDIAEMGANL-CVERVLDC 106 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCS---EEEESSSTTCCTTC-CCSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCcC---EEEEechhhhceec-CceEEEec
Confidence 4679999999999999999999999999999999998777653 5555555 89999999999999 6999984
Q ss_pred --------ecCC----------CCccchhhhhhhhcccCCc
Q 000047 1504 --------FDTD----------WNPQVDLQAQARAHRIGQK 1526 (2693)
Q Consensus 1504 --------yDpp----------WNP~~diQAIGRAHRIGQk 1526 (2693)
||+. .+.....||.||++|.+..
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 107 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4332 3344457999999998544
No 43
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=97.76 E-value=3.3e-05 Score=84.03 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=96.5
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecc
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRA 1488 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrA 1488 (2693)
..|+.++.+.+.++...|..||||+......+.|..+|...|+++..|+.... ++-.+++. . ++.. ..+.|+|..
T Consensus 17 ~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~-Ag~~--g~VtIATNm 91 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-E-AGQK--GAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-T-TTST--TCEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-h-ccCC--CceeehhhH
Confidence 35899999999999999999999999999999999999999999999987653 33333443 2 3333 248999999
Q ss_pred cccccCccc--------cCEEEEecCCCCccchhhhhhhhcccCCcccEEEE
Q 000047 1489 GGVGVNLQA--------ADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVL 1532 (2693)
Q Consensus 1489 GGeGLNLQa--------ADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~Vy 1532 (2693)
+|+|.|+.- -=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 999988642 33789999999999999999999999987554433
No 44
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=96.80 E-value=0.0029 Score=70.08 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=105.1
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeec
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIR 1487 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTr 1487 (2693)
...|+.++.+-+..+...|..|||.+..+..-++|..+|...|+++..|+.... ++-.++|.+ ++... .+-|+|.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAq--AG~~G--aVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAV--AGRRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHT--TTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHh--cccCC--cEEeecc
Confidence 356999999999999999999999999999999999999999999999988643 333345554 34333 4899999
Q ss_pred ccccccCccc----------------------------------------------------cCEEEEecCCCCccchhh
Q 000047 1488 AGGVGVNLQA----------------------------------------------------ADTVIIFDTDWNPQVDLQ 1515 (2693)
Q Consensus 1488 AGGeGLNLQa----------------------------------------------------ADtVIiyDppWNP~~diQ 1515 (2693)
.+|+|.|+.= -=+||.....-+-..+.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999732 237899999999999999
Q ss_pred hhhhhcccCCcccEEEEEEEeCCCHHHHHHHH
Q 000047 1516 AQARAHRIGQKRDVLVLRFETVQTVEEQVRAS 1547 (2693)
Q Consensus 1516 AIGRAHRIGQkKeV~VyRLIT~gSIEEkIler 1547 (2693)
-.||++|-|..-..++| -|+|..++.+
T Consensus 171 LRGRsGRQGDPGsSrFf-----lSLeDdLmr~ 197 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFY-----LSLGDELMRR 197 (219)
T ss_dssp HHHTSSGGGCCEEEEEE-----EETTSHHHHH
T ss_pred ccccccccCCCccceeE-----EeccHHHHHH
Confidence 99999999987666655 2566666554
No 45
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=96.21 E-value=0.016 Score=66.33 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=95.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwaP 1164 (2693)
...++-|+-|.-.|. .|.|.-..||=|||+++... +++... . .+.+-||..+.-|. .|...|-+|+
T Consensus 79 ~RhyDVQLiGgi~L~------~G~iaem~TGEGKTL~a~l~-a~l~al-~-g~~vhvvTvNdyLA~RDae~m~~iy~~l- 148 (273)
T d1tf5a3 79 MFPFKVQLMGGVALH------DGNIAEMKTGEGKTLTSTLP-VYLNAL-T-GKGVHVVTVNEYLASRDAEQMGKIFEFL- 148 (273)
T ss_dssp CCCCHHHHHHHHHHH------TTSEEECCTTSCHHHHHHHH-HHHHHT-T-SSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred eEEehhHHHHHHHHH------hhhheeecCCCcchhHHHHH-HHHHHh-c-CCCceEEecCccccchhhhHHhHHHHHc-
Confidence 456777888775553 35688899999999988544 444322 2 23467777777764 4999999998
Q ss_pred CCcEEEEcCC--hHHHHHHHHhhhhcCCccEEEEcHH-----HHHhcc--CCCcccccCccEEEEccccccccc------
Q 000047 1165 RIHKIVYCGP--PEERRRLFKEKIVHQKFNVLLTTYE-----YLMNKH--DRPKLSKIQWHYIIIDEGHRIKNA------ 1229 (2693)
Q Consensus 1165 sLkVIvy~Gs--~~eRk~l~ke~i~~~kfdVVITTYE-----~Lik~~--Dr~~L~kikWd~VIIDEAHRIKN~------ 1229 (2693)
++.+-+.... ...|+..+ ..||+-.|-. +|+... ....+....+.+.||||++-+.=.
T Consensus 149 Glsvg~~~~~~~~~~r~~~Y-------~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpl 221 (273)
T d1tf5a3 149 GLTVGLNLNSMSKDEKREAY-------AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 221 (273)
T ss_dssp TCCEEECCTTSCHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred CCCccccccccCHHHHHHHh-------hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCce
Confidence 4555444332 23443332 4578877754 444432 233455667899999999986210
Q ss_pred ---------cchHHHHHHhhcccccccccccCCCCCHHHHHHHhh
Q 000047 1230 ---------SCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLN 1265 (2693)
Q Consensus 1230 ---------sSKlsraLk~Lka~~RLLLTGTPLQNnLeELwSLLn 1265 (2693)
.+-.++.+.++. .+.-+||||- .....|||.+.+
T Consensus 222 iisg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 222 IISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred EeccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 111233332221 3456789996 445777777655
No 46
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=95.15 E-value=0.02 Score=67.80 Aligned_cols=148 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH-HHHHHHHH---C
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG-WESEINFW---A 1163 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q-W~eEfeKw---a 1163 (2693)
..+-+.|+.++.-++. +.-.||....|+|||.++..++..+..... ....+++++|+..-.. -.+.+.+. .
T Consensus 147 ~~~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 147 SDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred cccccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 3466789999986663 556789999999999998887777765433 3346899999866533 22222111 1
Q ss_pred CCCcEEEEcCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhccc
Q 000047 1164 PRIHKIVYCGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSS 1243 (2693)
Q Consensus 1164 PsLkVIvy~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~ 1243 (2693)
+......+.... .........-.......+.. .......+++||||||-.+- .......+..+...
T Consensus 223 ~~~~~~~~~~~~--------~~~t~~~ll~~~~~~~~~~~----~~~~~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~ 288 (359)
T d1w36d1 223 PLTDEQKKRIPE--------DASTLHRLLGAQPGSQRLRH----HAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDH 288 (359)
T ss_dssp SCCSCCCCSCSC--------CCBTTTSCC---------------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTT
T ss_pred Cchhhhhhhhhh--------hhhHHHHHHhhhhcchHHHH----hhhcccccceeeehhhhccC--HHHHHHHHHHhcCC
Confidence 000000000000 00000000000001111111 12334578999999998762 22345556667777
Q ss_pred ccccccccCCC
Q 000047 1244 HRLLLTGTPLQ 1254 (2693)
Q Consensus 1244 ~RLLLTGTPLQ 1254 (2693)
.+|+|.|=|-|
T Consensus 289 ~~lILvGD~~Q 299 (359)
T d1w36d1 289 ARVIFLGDRDQ 299 (359)
T ss_dssp CEEEEEECTTS
T ss_pred CEEEEECChhh
Confidence 88999998854
No 47
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=95.13 E-value=0.064 Score=61.55 Aligned_cols=121 Identities=22% Similarity=0.299 Sum_probs=77.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH----HHHHHHHHHCC
Q 000047 1089 GKLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP----GWESEINFWAP 1164 (2693)
Q Consensus 1089 gkLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~----QW~eEfeKwaP 1164 (2693)
-.-++-|+-|--.|. .|.|.-+.||=|||+++... +++... .. +.+-||..+.-|. .|...|.+|+
T Consensus 96 mRhyDVQLiGgi~l~------~g~iaem~TGEGKTL~a~l~-a~l~al-~g-~~vhvvTvNdyLA~RDa~~m~~~y~~l- 165 (288)
T d1nkta3 96 QRPFDVQVMGAAALH------LGNVAEMKTGEGKTLTCVLP-AYLNAL-AG-NGVHIVTVNDYLAKRDSEWMGRVHRFL- 165 (288)
T ss_dssp CCCCHHHHHHHHHHH------TTEEEECCTTSCHHHHTHHH-HHHHHT-TT-SCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred ceeeeehhHHHHHHh------hhhhhcccCCCchhHHHHHH-HHHHHh-cC-CCeEEEecCchhhhhhHHHHHHHHHHh-
Confidence 345677888765443 46788899999999988544 334322 22 3367777776663 4999999998
Q ss_pred CCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcH-----HHHHhcc--CCCcccccCccEEEEcccccc
Q 000047 1165 RIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTY-----EYLMNKH--DRPKLSKIQWHYIIIDEGHRI 1226 (2693)
Q Consensus 1165 sLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTY-----E~Lik~~--Dr~~L~kikWd~VIIDEAHRI 1226 (2693)
++.|-+..... .+|+.. ...||+..|- ++|+... ....+....+.+.||||++-+
T Consensus 166 Glsvg~~~~~~~~~~~~~~-------Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 229 (288)
T d1nkta3 166 GLQVGVILATMTPDERRVA-------YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSI 229 (288)
T ss_dssp TCCEEECCTTCCHHHHHHH-------HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHH
T ss_pred CCCcCcccccCChHHHHHH-------hhcccccccHHHHhhhhhhhhhccChhhhcccCCcEEEEEccccc
Confidence 45555444332 333332 2458888775 4454433 234455667899999999986
No 48
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=95.00 E-value=0.026 Score=61.57 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1090 KLREYQMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
.+||||...++.+...+.++. + -||..+.|+|||..+..++.+++..
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~ 51 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccc
Confidence 478999999999988877654 2 5789999999999999999887643
No 49
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=93.58 E-value=0.11 Score=57.06 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhcCC--C-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEE
Q 000047 1095 QMSGLRWLVSLYNNQL--N-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~l--n-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy 1171 (2693)
|.+.+.+|...+.++. + .||..+.|+|||..+.+++..+....... ..|..+..++..-..... ..++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~-----~~~~~~~~~~~~i~~~~~--~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----ATPCGVCDNCREIEQGRF--VDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC-----SSCCSCSHHHHHHHHTCC--TTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccc-----cCccccchHHHHHHcCCC--CeEEEe
Confidence 5667777776665542 3 57899999999999988877765433222 122233333322211111 222322
Q ss_pred cCChHHHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccc-cccchHHHHHHhhcccccccccc
Q 000047 1172 CGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIK-NASCKLNADLKHYQSSHRLLLTG 1250 (2693)
Q Consensus 1172 ~Gs~~eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIK-N~sSKlsraLk~Lka~~RLLLTG 1250 (2693)
...........+ .+..... ......++.+|||||+|+|. +....+.+.+..+....+++|+.
T Consensus 90 ~~~~~~~i~~ir----------------~~~~~~~-~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 90 DAASRTKVEDTR----------------DLLDNVQ-YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp ETTCSSSHHHHH----------------HHHHSCC-CSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred cchhcCCHHHHH----------------HHHHHHH-hccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 221110000000 0111111 11122357899999999983 22333445555555566777776
Q ss_pred cCCCCCHHHHHH
Q 000047 1251 TPLQNNLEELWA 1262 (2693)
Q Consensus 1251 TPLQNnLeELwS 1262 (2693)
+-...-+.-|.+
T Consensus 153 n~~~~i~~~i~S 164 (239)
T d1njfa_ 153 TDPQKLPVTILS 164 (239)
T ss_dssp SCGGGSCHHHHT
T ss_pred CCccccChhHhh
Confidence 654444444443
No 50
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=93.44 E-value=0.15 Score=61.39 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhcCC-CeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEE
Q 000047 1094 YQMSGLRWLVSLYNNQL-NGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~l-nGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy 1171 (2693)
-|-++|+-++...+++. ..+|..-+|+|||+.+.+++..+ .+|+|||||.... .+|.++|..|++.-.+..|
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 38788887777766664 45677789999998876666543 5789999998776 6799999999988777665
Q ss_pred c
Q 000047 1172 C 1172 (2693)
Q Consensus 1172 ~ 1172 (2693)
.
T Consensus 89 ~ 89 (413)
T d1t5la1 89 V 89 (413)
T ss_dssp C
T ss_pred c
Confidence 3
No 51
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.17 E-value=0.05 Score=59.34 Aligned_cols=49 Identities=14% Similarity=0.357 Sum_probs=29.9
Q ss_pred cCccEEEEccccccccccc-hHHHHHHhhcccccccccccCCCCCHHHHH
Q 000047 1213 IQWHYIIIDEGHRIKNASC-KLNADLKHYQSSHRLLLTGTPLQNNLEELW 1261 (2693)
Q Consensus 1213 ikWd~VIIDEAHRIKN~sS-KlsraLk~Lka~~RLLLTGTPLQNnLeELw 1261 (2693)
..+.++||||+|++.+... .+.+.+..+....+++|+.+-+..-+.-|.
T Consensus 130 ~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~ 179 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 179 (252)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHH
T ss_pred CCceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhh
Confidence 3578999999999954432 233444445555667777766554444433
No 52
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=90.86 E-value=1.5 Score=49.62 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=72.7
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHH----HHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEE
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLL----DVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFL 1483 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tL----DILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfL 1483 (2693)
.|||.......+......|.+|++.+...-.+ ..+..+|...|+.+..++|+++..+|.++....++++.+ +|
T Consensus 114 GSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---ii 190 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VV 190 (264)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EE
T ss_pred cccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC---EE
Confidence 58899988888888888899999999877554 456666667789999999999999999999999888766 56
Q ss_pred eeecccc-cccCccccCEEEE
Q 000047 1484 LSIRAGG-VGVNLQAADTVII 1503 (2693)
Q Consensus 1484 LSTrAGG-eGLNLQaADtVIi 1503 (2693)
|.|+++= ..+.+.+...||+
T Consensus 191 IGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 191 IGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp EECTTHHHHCCCCSCCCEEEE
T ss_pred EeehHHhcCCCCccccceeee
Confidence 6666653 3565555555554
No 53
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=90.52 E-value=0.26 Score=53.43 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1095 QMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
|++-++.++.. .....-|+..+.|+|||-.++.+..++........=+++|.|.
T Consensus 2 ~~~~l~~~i~~-~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEK-SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHT-CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence 55656555541 1334568999999999999998887653322222226677664
No 54
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=87.57 E-value=1.1 Score=53.50 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhcCCC-eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchH-HHHHHHHHHHCCCCcEEEE
Q 000047 1094 YQMSGLRWLVSLYNNQLN-GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVL-PGWESEINFWAPRIHKIVY 1171 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~ln-GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL-~QW~eEfeKwaPsLkVIvy 1171 (2693)
-|-++|+-++....++.+ ..|..-+|++||+.+.+++..+ .+|+|||||.... .+|.+++..|+++..+..|
T Consensus 12 dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~f 85 (408)
T d1c4oa1 12 DQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAVEYF 85 (408)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcCccceeeC
Confidence 477888888887777765 4677789999998876666543 4689999998665 7799999999987666554
No 55
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=86.78 E-value=0.51 Score=52.24 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH-HHHHHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG-WESEINF 1161 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q-W~eEfeK 1161 (2693)
+|.|-|.++|.|. ....++....|+|||.+.+.-+.+++.... ....+||++++....+ -...+.+
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~ 68 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 68 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHH
Confidence 4788999999752 334677788999999999888888876643 3345999999866533 3333433
No 56
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=85.67 E-value=0.42 Score=51.46 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1097 SGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1097 eGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+.+..|..+..++ .+.||....|+|||..+-.++..+.
T Consensus 22 ~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 22 ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence 3444444444443 3579999999999998877776664
No 57
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=85.41 E-value=0.28 Score=52.81 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCCccCCCcchHHHHHHHHHHHHHhhcCC--CeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1082 QPTCLQGGKLREYQMSGLRWLVSLYNNQL--NGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1082 qP~~L~ggkLRPYQleGL~WLlsLy~n~l--nGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+|..+....- |.+.+..|..+..++. +.||....|+|||..+-+++..+.
T Consensus 9 rP~~~~divg---~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 9 RPETLDEVYG---QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp CCSSGGGCCS---CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHccC---cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence 4554443332 3445555555444433 579999999999998877776553
No 58
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=83.88 E-value=1.7 Score=46.51 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcC--CCeEEEcCCCCChHHHHHHHHHHHH
Q 000047 1095 QMSGLRWLVSLYNNQ--LNGILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1095 QleGL~WLlsLy~n~--lnGILADEMGLGKTIQAIALIa~Ll 1134 (2693)
|.+.+++|.....++ .+-||..+.|+|||..+-+++..+.
T Consensus 29 ~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 29 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 344455554444333 3568999999999999887777664
No 59
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=82.74 E-value=1.3 Score=49.37 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=28.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
.+.||....|+|||..+=+++..+ ..+++.|-...++..|
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~ 82 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMF 82 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhhhcc
Confidence 356889999999999886666432 4567877766666544
No 60
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=81.86 E-value=1.1 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.8
Q ss_pred CeEEEcCCCCChHHHHHHHHHHHHH
Q 000047 1111 NGILADEMGLGKTVQVIALICYLME 1135 (2693)
Q Consensus 1111 nGILADEMGLGKTIQAIALIa~Lle 1135 (2693)
+.||..+.|+|||..+-+++..+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHHcC
Confidence 4699999999999998888876643
No 61
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=81.23 E-value=3 Score=46.27 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=75.2
Q ss_pred hcccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEE
Q 000047 1407 RLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIF 1482 (2693)
Q Consensus 1407 r~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVf 1482 (2693)
-.|||-++....+......|.+|+|.+...-....+...|. ..++.+..++|.++..+|.++...+.+++.+ +
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---i 161 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---I 161 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---E
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---E
Confidence 35899999999998888999999999988876666555554 5688999999999999999999999988877 7
Q ss_pred Eeeeccccc-ccCccccCEEEE
Q 000047 1483 LLSIRAGGV-GVNLQAADTVII 1503 (2693)
Q Consensus 1483 LLSTrAGGe-GLNLQaADtVIi 1503 (2693)
||.|+++-. .+.+.+.-.||+
T Consensus 162 viGths~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 162 LIGTHKLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp EEECTHHHHSCCCCSSEEEEEE
T ss_pred EEeehhhhccCCccccccceee
Confidence 778886643 465555555554
No 62
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=76.45 E-value=1.5 Score=48.86 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCchHHH
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSVLPG 1154 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSLL~Q 1154 (2693)
.|-+-|+++|++. ....++...-|+|||.+.+.-+.+++..+. ....+||++++....+
T Consensus 11 ~L~~eQ~~~v~~~------~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~ 70 (318)
T d1pjra1 11 HLNKEQQEAVRTT------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70 (318)
T ss_dssp TSCHHHHHHHHCC------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH
T ss_pred hCCHHHHHHHhCC------CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHH
Confidence 4788999999742 334677788999999999988888876543 2245899999876543
No 63
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.81 E-value=2.9 Score=44.95 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=25.2
Q ss_pred cccCccEEEEccccccccccchHHHHHHhh--ccccccccccc
Q 000047 1211 SKIQWHYIIIDEGHRIKNASCKLNADLKHY--QSSHRLLLTGT 1251 (2693)
Q Consensus 1211 ~kikWd~VIIDEAHRIKN~sSKlsraLk~L--ka~~RLLLTGT 1251 (2693)
....+.++++||++.+..........+..+ .....+++++|
T Consensus 120 ~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~~ 162 (253)
T d1sxja2 120 LNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICN 162 (253)
T ss_dssp SSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEES
T ss_pred ccccceEEEeeeccccccchhhhhHHHhhhhcccccccccccc
Confidence 334578999999999876555444444433 34445555554
No 64
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=69.22 E-value=11 Score=40.71 Aligned_cols=116 Identities=14% Similarity=0.186 Sum_probs=70.8
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcC----CCCCEEEEecCchH------HHHHHHHHHHC-----CCCcEEEEc
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKN----DRGPFLVVVPSSVL------PGWESEINFWA-----PRIHKIVYC 1172 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~----~~gP~LIVVPtSLL------~QW~eEfeKwa-----PsLkVIvy~ 1172 (2693)
...|.||..+.|.|||..+=.++..+....- ....++-+-..+++ .+|...+.... ..-++++|.
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI 121 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 3457899999999999988777776654321 12445555566666 36877664332 122445554
Q ss_pred CChHH------------HHHHHHhhhhcCCccEE-EEcHHHHHhccCCCcccccCccEEEEccc
Q 000047 1173 GPPEE------------RRRLFKEKIVHQKFNVL-LTTYEYLMNKHDRPKLSKIQWHYIIIDEG 1223 (2693)
Q Consensus 1173 Gs~~e------------Rk~l~ke~i~~~kfdVV-ITTYE~Lik~~Dr~~L~kikWd~VIIDEA 1223 (2693)
..... -..+++..+..+...++ -||++.+.+...+..-...+|..|.|+|-
T Consensus 122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep 185 (195)
T d1jbka_ 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEP 185 (195)
T ss_dssp ETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCC
T ss_pred chHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCC
Confidence 43211 11344444556677766 46777777655555555667899999985
No 65
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=68.13 E-value=7.8 Score=43.63 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=73.7
Q ss_pred HHHHHHHhh--cCCCeEEEcCCCCChHHHHHHHHHHHHHhcC----CCCCEEEEecCchH------HHHHHHHHHHC---
Q 000047 1099 LRWLVSLYN--NQLNGILADEMGLGKTVQVIALICYLMETKN----DRGPFLVVVPSSVL------PGWESEINFWA--- 1163 (2693)
Q Consensus 1099 L~WLlsLy~--n~lnGILADEMGLGKTIQAIALIa~Lle~k~----~~gP~LIVVPtSLL------~QW~eEfeKwa--- 1163 (2693)
++.|+..+. ...|.||..+.|.|||..+-.++..+....- ....++.+-+.+++ .+|...+...+
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~ 106 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL 106 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHh
Confidence 444544433 3457899999999999988887776654321 12345555555555 34766554322
Q ss_pred -CCCcEEEEcCCh-------------HHHHHHHHhhhhcCCccEE-EEcHHHHHhccCCCcccccCccEEEEcccc
Q 000047 1164 -PRIHKIVYCGPP-------------EERRRLFKEKIVHQKFNVL-LTTYEYLMNKHDRPKLSKIQWHYIIIDEGH 1224 (2693)
Q Consensus 1164 -PsLkVIvy~Gs~-------------~eRk~l~ke~i~~~kfdVV-ITTYE~Lik~~Dr~~L~kikWd~VIIDEAH 1224 (2693)
..-.+++|.... ..-..+++..+..+.+.++ -||++.+.+...+..-....|..|.|+|-.
T Consensus 107 ~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps 182 (268)
T d1r6bx2 107 EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 182 (268)
T ss_dssp SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred hccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCC
Confidence 223455553321 1223344445556677766 577787776555555455679999999965
No 66
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.79 E-value=5.1 Score=40.61 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=25.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++...|.+|||..-|..+..+.. ..+.+|++-|..
T Consensus 6 li~GpMfsGKTt~Li~~~~~~~~---~g~~v~~ikp~~ 40 (133)
T d1xbta1 6 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAK 40 (133)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETT
T ss_pred EEEecccCHHHHHHHHHHHHHHH---cCCcEEEEeccc
Confidence 57789999999877766654432 334588888864
No 67
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=66.76 E-value=9.2 Score=41.84 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=59.9
Q ss_pred CCCCCEEEEecC-chHHHHHHHHHHHCCCCcEEEEcCChHH--HHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccC
Q 000047 1138 NDRGPFLVVVPS-SVLPGWESEINFWAPRIHKIVYCGPPEE--RRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQ 1214 (2693)
Q Consensus 1138 ~~~gP~LIVVPt-SLL~QW~eEfeKwaPsLkVIvy~Gs~~e--Rk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kik 1214 (2693)
...+-+.||||. ..+......+.+++|++++.+.+|.... +... ...+..++++|+|+|-=.= . -+.--+
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~i-m~~F~~g~~~ILv~TtvIE-v-----GiDvpn 101 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV-MNDFHHQRFNVLVCTTIIE-T-----GIDIPT 101 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHH-HHHHHTTSCCEEEESSTTG-G-----GSCCTT
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHH-HHHHHcCCcceEEEehhhh-h-----ccCCCC
Confidence 344558999996 4577889999999999999999996543 3333 3456788999999985211 1 122334
Q ss_pred ccEEEEccccccc
Q 000047 1215 WHYIIIDEGHRIK 1227 (2693)
Q Consensus 1215 Wd~VIIDEAHRIK 1227 (2693)
-.+|||..|+++.
T Consensus 102 A~~iiI~~a~rfG 114 (211)
T d2eyqa5 102 ANTIIIERADHFG 114 (211)
T ss_dssp EEEEEETTTTSSC
T ss_pred CcEEEEecchhcc
Confidence 5789999999973
No 68
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=63.62 E-value=21 Score=38.20 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhcC---CC-eEEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1094 YQMSGLRWLVSLYNNQ---LN-GILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1094 YQleGL~WLlsLy~n~---ln-GILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
....++.++....++. .+ .+|..+.|+|||--+-|+...+...
T Consensus 17 ~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~ 63 (213)
T d1l8qa2 17 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 63 (213)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccC
Confidence 3455555555543321 22 5799999999999888887776543
No 69
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=63.28 E-value=11 Score=41.53 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1099 LRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1099 L~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
++.+..+...+...+|..|+|+|||..|=++ ... ......+++++.-..+
T Consensus 13 ~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~i-h~~--s~~~~~~~~~~~~~~~ 62 (247)
T d1ny5a2 13 LEKIKKISCAECPVLITGESGVGKEVVARLI-HKL--SDRSKEPFVALNVASI 62 (247)
T ss_dssp HHHHHHHTTCCSCEEEECSTTSSHHHHHHHH-HHH--STTTTSCEEEEETTTS
T ss_pred HHHHHHHhCCCCCEEEECCCCcCHHHHHHHH-HHh--cCCcccccccchhhhh
Confidence 3444445556778899999999999866333 221 2233344555444433
No 70
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=62.47 E-value=3.8 Score=44.82 Aligned_cols=58 Identities=14% Similarity=0.283 Sum_probs=33.6
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCG 1173 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~G 1173 (2693)
+|+-.+|.|||-++.-++.++... ..+ +.+|+=-.--.--.+.++.|+-.+.+-+|..
T Consensus 15 ~lvGptGvGKTTTiAKLAa~~~~~--~~k-V~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~ 72 (213)
T d1vmaa2 15 MVVGVNGTGKTTSCGKLAKMFVDE--GKS-VVLAAADTFRAAAIEQLKIWGERVGATVISH 72 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT--TCC-EEEEEECTTCHHHHHHHHHHHHHHTCEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCc-eEEEeecccccchhHHHHHHhhhcCcccccc
Confidence 578999999999888787776543 234 4444433222233445555554344444433
No 71
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=62.12 E-value=14 Score=43.31 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=64.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcC----CCCCEEEEecCchH------HHHHHHHHHHC-----CCCcEEEEc
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKN----DRGPFLVVVPSSVL------PGWESEINFWA-----PRIHKIVYC 1172 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~----~~gP~LIVVPtSLL------~QW~eEfeKwa-----PsLkVIvy~ 1172 (2693)
...|.||..+.|.|||..+=.|+..+....- ....++.+-...++ .+|...+.... ..-.+++|.
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfi 121 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI 121 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEe
Confidence 4457799999999999888777766654321 11234555555555 36777664321 112344443
Q ss_pred CChH------------HHHHHHHhhhhcCCccEE-EEcHHHHHhccCCCcccccCccEEEEccccc
Q 000047 1173 GPPE------------ERRRLFKEKIVHQKFNVL-LTTYEYLMNKHDRPKLSKIQWHYIIIDEGHR 1225 (2693)
Q Consensus 1173 Gs~~------------eRk~l~ke~i~~~kfdVV-ITTYE~Lik~~Dr~~L~kikWd~VIIDEAHR 1225 (2693)
..-. .-..+++..+..+.+.+| .||++-+.. +.+..-...+|..|.|+|-..
T Consensus 122 de~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~~v~v~ep~~ 186 (387)
T d1qvra2 122 DELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTV 186 (387)
T ss_dssp CCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCH
T ss_pred ccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHhcccccCCCCcH
Confidence 3211 112344445556777766 577777754 444445566799999999654
No 72
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=57.96 E-value=17 Score=37.14 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH-hh---cCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEe
Q 000047 1409 CGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYL-TF---KQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLL 1484 (2693)
Q Consensus 1409 SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L-~~---rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLL 1484 (2693)
+.-..++++++.+....|+|++|+|.....++.|-++| .. .-+.....+.... ...+ ++|
T Consensus 19 ~~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~~~-------------~~~P---I~l 82 (147)
T d1em8a_ 19 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR-------------GGAP---VEI 82 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSST-------------TCCS---EEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhCCCCcccccccccCCCcc-------------CCCC---EEe
Confidence 34467788999999999999999999999999999999 22 2344444332211 2233 455
Q ss_pred eecccccccC-ccccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 000047 1485 SIRAGGVGVN-LQAADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETVQTVEEQVRASAEHK 1551 (2693)
Q Consensus 1485 STrAGGeGLN-LQaADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~gSIEEkIleraekK 1551 (2693)
++. +.+ ...++.+|+++..+ |. +.++.. +|+-++. +.=+.+...|.++|
T Consensus 83 ~~~----~~~~~~~~dvlinl~~~~-p~-~~~~f~-----------Rvieiv~-~de~~~~~aR~rwk 132 (147)
T d1em8a_ 83 AWP----QKRSSSRRDILISLRTSF-AD-FATAFT-----------EVVDFVP-YEDSLKQLARERYK 132 (147)
T ss_dssp ECT----TSCCCSCCSEEEECCSSC-CG-GGGGCS-----------EEEEEEC-SSHHHHHHHHHHHH
T ss_pred cCC----CCCCCccceEEEECCCCC-ch-hhhccC-----------EEEEEEC-cCHHHHHHHHHHHH
Confidence 543 222 34578889988654 32 222222 4566665 44444445555555
No 73
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=57.61 E-value=5.6 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=25.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
|+...|.+|||...|..+..+... ...+|||-|..
T Consensus 11 lI~GpMfSGKTteLi~~~~~~~~~---g~~vl~i~~~~ 45 (141)
T d1xx6a1 11 VIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 45 (141)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred EEEeccccHHHHHHHHHHHHhhhc---CCcEEEEEecc
Confidence 678999999998887777655432 33588888864
No 74
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=57.08 E-value=5.3 Score=43.42 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCCh-HHHHHHHHhhhhcCC
Q 000047 1112 GILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPP-EERRRLFKEKIVHQK 1190 (2693)
Q Consensus 1112 GILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~-~eRk~l~ke~i~~~k 1190 (2693)
.+|+-.+|.|||-++.-|+.++... ..+ +.+|+--.--.--.+.++.|+-.+.+-+|.... .+-......
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~~~--g~k-V~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~------ 79 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQNL--GKK-VMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYD------ 79 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT--TCC-EEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHH------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCc-EEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHH------
Confidence 3578999999999988887766532 233 555554322222233334443222222222211 111111110
Q ss_pred ccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-----------cccccccccccCCCCCHHH
Q 000047 1191 FNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-----------QSSHRLLLTGTPLQNNLEE 1259 (2693)
Q Consensus 1191 fdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-----------ka~~RLLLTGTPLQNnLeE 1259 (2693)
.+ .......+++|+||=+=|.-+... +...+..+ .....|.|.||-=++.+.+
T Consensus 80 ---------~~------~~~~~~~~d~ilIDTaGr~~~d~~-l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~ 143 (207)
T d1okkd2 80 ---------AV------QAMKARGYDLLFVDTAGRLHTKHN-LMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQ 143 (207)
T ss_dssp ---------HH------HHHHHHTCSEEEECCCCCCTTCHH-HHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHH
T ss_pred ---------HH------HHHHHCCCCEEEcCccccchhhHH-HHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHH
Confidence 00 011122468899998876544322 11111111 2344677888888888888
Q ss_pred HHHHhhhccC
Q 000047 1260 LWALLNFLLP 1269 (2693)
Q Consensus 1260 LwSLLnFL~P 1269 (2693)
++..+..+.+
T Consensus 144 ~~~~~~~~~~ 153 (207)
T d1okkd2 144 AKKFHEAVGL 153 (207)
T ss_dssp HHHHHHHHCC
T ss_pred HHHhhhccCC
Confidence 8877776644
No 75
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=55.88 E-value=7.1 Score=42.61 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=66.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCCh-HHHHHHHHhhhhcCCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPP-EERRRLFKEKIVHQKF 1191 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~-~eRk~l~ke~i~~~kf 1191 (2693)
+|+-.+|.|||-++.-++.++.. ... .++||+--.--.--.+.++.|+-.+.+-++.... .+...+.....
T Consensus 13 ~lvGptGvGKTTTiAKLA~~~~~--~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~----- 84 (211)
T d2qy9a2 13 LMVGVNGVGKTTTIGKLARQFEQ--QGK-SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI----- 84 (211)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT--TTC-CEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHH-----
T ss_pred EEECCCCCCHHHHHHHHHHHHHH--CCC-cEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHH-----
Confidence 46899999999998888766542 223 3555554333333455666665433332332211 11111111100
Q ss_pred cEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhh-----------cccccccccccCCCCCHHHH
Q 000047 1192 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHY-----------QSSHRLLLTGTPLQNNLEEL 1260 (2693)
Q Consensus 1192 dVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~L-----------ka~~RLLLTGTPLQNnLeEL 1260 (2693)
.......+++|+||=+=|.-+.. .+...|..+ .....|.|.+|-=++.+.+.
T Consensus 85 ----------------~~a~~~~~d~ilIDTaGr~~~d~-~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~ 147 (211)
T d2qy9a2 85 ----------------QAAKARNIDVLIADTAGRLQNKS-HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA 147 (211)
T ss_dssp ----------------HHHHHTTCSEEEECCCCCGGGHH-HHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH
T ss_pred ----------------HHHHHcCCCEEEeccCCCccccH-HHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH
Confidence 01112346888888876643322 122222222 12334667777766666666
Q ss_pred HHHhhhcc
Q 000047 1261 WALLNFLL 1268 (2693)
Q Consensus 1261 wSLLnFL~ 1268 (2693)
+..+..+.
T Consensus 148 ~~~~~~~~ 155 (211)
T d2qy9a2 148 KLFHEAVG 155 (211)
T ss_dssp HHHHHHSC
T ss_pred hhhhhccC
Confidence 66655553
No 76
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=55.47 E-value=3.5 Score=44.88 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhc-------CCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETK-------NDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k-------~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+.-++|+.+.|+|||..++.++..+.... ...+++|++.-.....++...+..+.
T Consensus 29 g~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 29 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG 90 (274)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchHHHHHHHHHHHh
Confidence 44568999999999999988887654321 12346788876666666666665554
No 77
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.48 E-value=4.7 Score=44.56 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=28.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWE 1156 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~ 1156 (2693)
.+.+|..+.|+|||..+=+++.++ ..+++.|.+..+...|.
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~------~~~~~~i~~~~l~~~~~ 79 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLA 79 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT------TCEEEEECHHHHTTSCT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh------CCeEEEEEchhhccccc
Confidence 456888999999998765554432 45677777666655553
No 78
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=52.74 E-value=8.9 Score=41.53 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=31.7
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAP 1164 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaP 1164 (2693)
+|+-.+|.|||-++.-|+.++... ..+ +++|+--.--..-.+.++.|+.
T Consensus 14 ~lvGp~GvGKTTTiaKLA~~~~~~--g~k-V~lit~Dt~R~gA~eQL~~~a~ 62 (207)
T d1ls1a2 14 FLVGLQGSGKTTTAAKLALYYKGK--GRR-PLLVAADTQRPAAREQLRLLGE 62 (207)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT--TCC-EEEEECCSSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCc-EEEEecccccchHHHHHHHHHH
Confidence 568999999999988887776543 233 5666654444444455555553
No 79
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=50.65 E-value=13 Score=39.16 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=27.4
Q ss_pred hHHHHHHHH-HHHHHhhc----CCCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1092 REYQMSGLR-WLVSLYNN----QLNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1092 RPYQleGL~-WLlsLy~n----~lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
|+.|++-|. |+.....+ ..+.+|..++|+|||..+=+++..+
T Consensus 21 Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 567766554 44333332 1456899999999998876666555
No 80
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=47.95 E-value=18 Score=42.34 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=33.6
Q ss_pred cCCCcchHHHHHHHHHHHHHhhcCCC-eEEEcCCCCChHHHHHHHHHHHH
Q 000047 1086 LQGGKLREYQMSGLRWLVSLYNNQLN-GILADEMGLGKTVQVIALICYLM 1134 (2693)
Q Consensus 1086 L~ggkLRPYQleGL~WLlsLy~n~ln-GILADEMGLGKTIQAIALIa~Ll 1134 (2693)
+...-+-++|.+.+.++.. ...| .|++-.||+|||-+.-+++.++.
T Consensus 137 l~~LG~~~~~~~~l~~l~~---~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 137 LHSLGMTAHNHDNFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp GGGSCCCHHHHHHHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhhcccHHHHHHHHHHHh---hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3345677899888887764 2223 36889999999998888887663
No 81
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=47.40 E-value=11 Score=45.29 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcC-CCCCEEEEecCch
Q 000047 1090 KLREYQMSGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKN-DRGPFLVVVPSSV 1151 (2693)
Q Consensus 1090 kLRPYQleGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~-~~gP~LIVVPtSL 1151 (2693)
.|-+-|.++|.- ...+.++...-|+|||.+.+.-+.||+..+. ...-+|||+.+.-
T Consensus 11 ~L~~eQ~~~v~~------~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~~ 67 (623)
T g1qhh.1 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67 (623)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHH
T ss_pred hcCHHHHHHHcC------CCCCEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccHH
Confidence 688889988851 2345666677999999999999999987643 2234899987643
No 82
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=44.71 E-value=17 Score=36.97 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=25.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCc
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSS 1150 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtS 1150 (2693)
++.-.|.+|||-.-|-.+..+... .+.++++-|..
T Consensus 6 ~i~GpMfsGKTteLi~~~~~~~~~---~~kv~~ikp~~ 40 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKI 40 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECC
T ss_pred EEEccccCHHHHHHHHHHHHHHHC---CCcEEEEEEcc
Confidence 567899999998877766555332 34588888874
No 83
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=43.75 E-value=11 Score=43.43 Aligned_cols=40 Identities=23% Similarity=0.100 Sum_probs=27.4
Q ss_pred CCeEE-EcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHH
Q 000047 1110 LNGIL-ADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLP 1153 (2693)
Q Consensus 1110 lnGIL-ADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~ 1153 (2693)
.|.+| .-+.|+|||..+=++...+- ..-+++.|-...++.
T Consensus 123 ~g~~l~~G~pG~GKT~la~ala~~~~----~~~~~~~~~~~~~~~ 163 (321)
T d1w44a_ 123 SGMVIVTGKGNSGKTPLVHALGEALG----GKDKYATVRFGEPLS 163 (321)
T ss_dssp SEEEEEECSSSSCHHHHHHHHHHHHH----TTSCCEEEEBSCSST
T ss_pred CceEEEECCCCccHHHHHHHHHHHhc----CCCCeEEEEhhHhhh
Confidence 34445 69999999998877776542 223567777777665
No 84
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=41.70 E-value=17 Score=39.43 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=24.4
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHC
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWA 1163 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwa 1163 (2693)
+|+-.+|.|||-++.-|++++... ..+ +.||+=-.--..-.+.++.|+
T Consensus 16 ~lvGptGvGKTTTiAKLA~~~~~~--g~k-V~lit~Dt~R~ga~eQL~~~a 63 (211)
T d1j8yf2 16 MLVGVQGTGKATTAGKLAYFYKKK--GFK-VGLVGADVYRPAALEQLQQLG 63 (211)
T ss_dssp EEECSCCC----HHHHHHHHHHHT--TCC-EEEEECCCSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCc-eEEEEeeccccchhHHHHHhc
Confidence 468999999999988887766532 234 444443222222234455554
No 85
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=38.81 E-value=11 Score=42.53 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=27.0
Q ss_pred cCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCch
Q 000047 1108 NQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSV 1151 (2693)
Q Consensus 1108 n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSL 1151 (2693)
...+.+|.-++|+|||..|=+++..+ ..+++.+-....
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~------~~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc------ccchhccccccc
Confidence 34677899999999999998777654 245555554444
No 86
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=38.49 E-value=17 Score=41.60 Aligned_cols=124 Identities=14% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCChH
Q 000047 1097 SGLRWLVSLYNNQLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPPE 1176 (2693)
Q Consensus 1097 eGL~WLlsLy~n~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~~ 1176 (2693)
+.+.++..+...+.|.+++..||+|||-..-+++. .-.....+++|--...+.- .+...++.+.+.
T Consensus 154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~----~i~~~~rivtiEd~~El~l--------~~~~~~~~~~~~-- 219 (323)
T d1g6oa_ 154 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME----FIPKEERIISIEDTEEIVF--------KHHKNYTQLFFG-- 219 (323)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGG----GSCTTCCEEEEESSCCCCC--------SSCSSEEEEECB--
T ss_pred HHHHHHHHHHHhCCCEEEEeeccccchHHHHHHhh----hcccccceeeccchhhhhc--------ccccccceeccc--
Confidence 34555666667788999999999999976544443 2333344555533322210 011122222211
Q ss_pred HHHHHHHhhhhcCCccEEEEcHHHHHhccCCCcccccCccEEEEccccccccccchHHHHHHhhcccccccccccCCCCC
Q 000047 1177 ERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNN 1256 (2693)
Q Consensus 1177 eRk~l~ke~i~~~kfdVVITTYE~Lik~~Dr~~L~kikWd~VIIDEAHRIKN~sSKlsraLk~Lka~~RLLLTGTPLQNn 1256 (2693)
.+ .|+..+.+ ...+.+.|+|||.|.- . ...+.+++.+...+.-.| +|-.-|+
T Consensus 220 --------------~~---~~~~~ll~-----~~lR~~pd~iivgEiR---~--~ea~~~l~a~~tGh~g~~-tT~Ha~s 271 (323)
T d1g6oa_ 220 --------------GN---ITSADCLK-----SCLRMRPDRIILGELR---S--SEAYDFYNVLCSGHKGTL-TTLHAGS 271 (323)
T ss_dssp --------------TT---BCHHHHHH-----HHTTSCCSEEEESCCC---S--THHHHHHHHHHTTCSCEE-EEECCSS
T ss_pred --------------cc---hhHHHHHH-----HHhccCCCcccCCccC---c--hhHHHHHHHHHhcCCcEE-EEECCCC
Confidence 01 14444433 2234678999999972 2 234455665555554322 2445566
Q ss_pred HHHHHH
Q 000047 1257 LEELWA 1262 (2693)
Q Consensus 1257 LeELwS 1262 (2693)
..+...
T Consensus 272 ~~~a~~ 277 (323)
T d1g6oa_ 272 SEEAFI 277 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 87
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=37.72 E-value=22 Score=37.68 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=18.9
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
.+.||....|+|||..|-+++..+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999998887665443
No 88
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=37.67 E-value=10 Score=37.46 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEeeecccccc
Q 000047 1413 EMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLSIRAGGVG 1492 (2693)
Q Consensus 1413 elLdeLL~kLkatGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLSTrAGGeG 1492 (2693)
..|...+. ..+.+|||.|......+.|.+.|...|+.+..+++-. .|. +..+ .|.......|
T Consensus 24 ~~L~~~i~---~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~----------~~~--~~~~---~i~~~~l~~G 85 (117)
T d2eyqa2 24 DALRKFLE---TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EAS--DRGR---YLMIGAAEHG 85 (117)
T ss_dssp HHHHHHHT---TCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG----------GCC--TTCC---EEEECCCCSC
T ss_pred HHHHHHHH---hCCCeEEEEECCccHHHHHHHHHHHcCCCceEecChh----------hhc--CceE---EEEEecCccc
Confidence 44444443 3467899999999999999999999999987765422 232 2233 3334678899
Q ss_pred cCccccCEEEEecCC
Q 000047 1493 VNLQAADTVIIFDTD 1507 (2693)
Q Consensus 1493 LNLQaADtVIiyDpp 1507 (2693)
.-+.+...+|+-+.+
T Consensus 86 F~~~~~~l~vItE~d 100 (117)
T d2eyqa2 86 FVDTVRNLALICESD 100 (117)
T ss_dssp EEETTTTEEEEEHHH
T ss_pred cccCCCCEEEEEchH
Confidence 999999999997643
No 89
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.50 E-value=41 Score=35.68 Aligned_cols=91 Identities=9% Similarity=0.032 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHh----hcCC----eEEEEeCCCCHHHHHHHHHHHhCCCCCc
Q 000047 1408 LCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEDYLT----FKQY----RYLRLDGHTSGGDRGALIDKFNQQDSPF 1479 (2693)
Q Consensus 1408 ~SgKLelLdeLL~kLkatGhKVLIFSQft~tLDILed~L~----~rGi----kylRLDGSTS~eERqeiId~FN~~dSd~ 1479 (2693)
.+||-....-.+..+...+.|+||.+..+..+..+.+.|+ ..++ .+..+++.....++.+.+...... +
T Consensus 68 GsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~- 144 (237)
T d1gkub1 68 GVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNF--K- 144 (237)
T ss_dssp TSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGC--S-
T ss_pred CChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccccc--c-
Confidence 4677765444444455678899999999977766555553 3343 355667777777777777655322 2
Q ss_pred eEEEeee-cccccc-cCccccCEEEE
Q 000047 1480 FIFLLSI-RAGGVG-VNLQAADTVII 1503 (2693)
Q Consensus 1480 fVfLLST-rAGGeG-LNLQaADtVIi 1503 (2693)
+|++| ...-.. .++...++||+
T Consensus 145 --Ilv~Tp~~l~~~~~~~~~~~~vVv 168 (237)
T d1gkub1 145 --IVITTTQFLSKHYRELGHFDFIFV 168 (237)
T ss_dssp --EEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred --eeccChHHHHHhhhhcCCCCEEEE
Confidence 45554 332222 23445555444
No 90
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=31.77 E-value=25 Score=37.17 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYL 1133 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~L 1133 (2693)
.+.||..+.|+|||..|=+++.++
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHhcc
Confidence 467999999999999886665544
No 91
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=31.18 E-value=34 Score=35.92 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHH
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINFW 1162 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKw 1162 (2693)
.-.+|+.+.|+|||..++.++...... ..+++.++-......+.+.+..+
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~~~~~---~~~~~~is~e~~~~~~~~~~~~~ 76 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEESRAQLLRNAYSW 76 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSCHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh---ccccceeeccCCHHHHHHHHHHc
Confidence 345889999999999999998886533 34467777655555565555544
No 92
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.58 E-value=28 Score=34.09 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=27.1
Q ss_pred CCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecC
Q 000047 1110 LNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPS 1149 (2693)
Q Consensus 1110 lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPt 1149 (2693)
++.+|.-+.|+|||..+-.++..+...+.. ...+.|+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~--v~~~~~~~ 39 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVP--VDGFYTEE 39 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCC--CEEEECCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCE--EEEEEecc
Confidence 367899999999999988888877654322 23455554
No 93
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=27.24 E-value=80 Score=33.09 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHHHhhhhcCCccEEEEcHHHHHhcc
Q 000047 1128 ALICYLMETKNDRGPFLVVVPSSVLPGWESEINFWAPRIHKIVYCGPP--EERRRLFKEKIVHQKFNVLLTTYEYLMNKH 1205 (2693)
Q Consensus 1128 ALIa~Lle~k~~~gP~LIVVPtSLL~QW~eEfeKwaPsLkVIvy~Gs~--~eRk~l~ke~i~~~kfdVVITTYE~Lik~~ 1205 (2693)
-++..+.+......++||.|++.-...+..++-.-. ++.+..|+|.. .+|..++ ..+..++++|+|+|--.-
T Consensus 19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~-Gi~a~~~Hg~~~~~eR~~~l-~~F~~G~~~vLVaT~v~~---- 92 (174)
T d1c4oa2 19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-GIRARYLHHELDAFKRQALI-RDLRLGHYDCLVGINLLR---- 92 (174)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHHHHHH-HHHHTTSCSEEEESCCCC----
T ss_pred HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhc-CCceEEEecccchHHHHHHH-HHHHCCCeEEEEeeeeee----
Confidence 344444443333456899999977776655544433 68889999975 4565554 456779999999975321
Q ss_pred CCCcccccCccEEEEccccc
Q 000047 1206 DRPKLSKIQWHYIIIDEGHR 1225 (2693)
Q Consensus 1206 Dr~~L~kikWd~VIIDEAHR 1225 (2693)
.-+..-+.++||+=.+++
T Consensus 93 --~GiDip~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 93 --EGLDIPEVSLVAILDADK 110 (174)
T ss_dssp --TTCCCTTEEEEEETTTTS
T ss_pred --eeccCCCCcEEEEecccc
Confidence 123333456777644444
No 94
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=26.98 E-value=23 Score=37.53 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=28.7
Q ss_pred hHHHHHHHH-HHHHHhhcCCC-----e--EEEcCCCCChHHHHHHHHHHHHHh
Q 000047 1092 REYQMSGLR-WLVSLYNNQLN-----G--ILADEMGLGKTVQVIALICYLMET 1136 (2693)
Q Consensus 1092 RPYQleGL~-WLlsLy~n~ln-----G--ILADEMGLGKTIQAIALIa~Lle~ 1136 (2693)
|+-|++.|. ++.....++.+ . +|..+.|+|||..+-+++..+.+.
T Consensus 21 Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~ 73 (287)
T d1w5sa2 21 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA 73 (287)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhh
Confidence 456767653 44333333321 1 345899999999998888877543
No 95
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=26.13 E-value=83 Score=34.97 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=91.8
Q ss_pred HHHHHHHHhhcCCCeEEEEEc-----chHHHHHHHHHHhhcCCeEEEEe----------------------CCCCHHHHH
Q 000047 1414 MLDRLLPKLKATDHRVLFFST-----MTRLLDVMEDYLTFKQYRYLRLD----------------------GHTSGGDRG 1466 (2693)
Q Consensus 1414 lLdeLL~kLkatGhKVLIFSQ-----ft~tLDILed~L~~rGikylRLD----------------------GSTS~eERq 1466 (2693)
.|.+++.+++.++++.||-.- ..+..-.+...|...|..++.|- .+++.++--
T Consensus 3 ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~ 82 (267)
T d1qopa_ 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCF 82 (267)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhh
Confidence 467778888888888776432 22333334444555677666652 456667777
Q ss_pred HHHHHHhCCCCCceEEEee--ecccccccC--cc-----ccCEEEEecCCCCccchhhhhhhhcccCCcccEEEEEEEeC
Q 000047 1467 ALIDKFNQQDSPFFIFLLS--IRAGGVGVN--LQ-----AADTVIIFDTDWNPQVDLQAQARAHRIGQKRDVLVLRFETV 1537 (2693)
Q Consensus 1467 eiId~FN~~dSd~fVfLLS--TrAGGeGLN--LQ-----aADtVIiyDppWNP~~diQAIGRAHRIGQkKeV~VyRLIT~ 1537 (2693)
++++.|+.....+.++|++ -....-|++ +. .+|-||+-|++|.-....-...+ ++.+....|++.
T Consensus 83 ~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~------~~~l~~I~lvaP 156 (267)
T d1qopa_ 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAAL------RHNIAPIFICPP 156 (267)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHH------HTTCEEECEECT
T ss_pred hhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhh------ccCceEEEEecc
Confidence 8888887655444455555 245555655 22 27999999999865544433333 346788899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcccC
Q 000047 1538 QTVEEQVRASAEHKLGVANQSITAG 1562 (2693)
Q Consensus 1538 gSIEEkIleraekKl~Li~kVIqaG 1562 (2693)
.|-+++|...++.-..++--+-..|
T Consensus 157 tt~~~Ri~~i~~~a~gFiY~vs~~G 181 (267)
T d1qopa_ 157 NADDDLLRQVASYGRGYTYLLSRSG 181 (267)
T ss_dssp TCCHHHHHHHHHHCCSCEEEESSSS
T ss_pred cccHHHHHHHHhhCchhhhhhcccc
Confidence 9999999888876555444333333
No 96
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=25.68 E-value=49 Score=33.86 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCCeEEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHH
Q 000047 1109 QLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGW 1155 (2693)
Q Consensus 1109 ~lnGILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVPtSLL~QW 1155 (2693)
+.-.+|+.+.|+|||..++.++......+. .++|++.........
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~--~~~~~~s~e~~~~~~ 70 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDI 70 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCcccccccCCHHHH
Confidence 334589999999999998887775544332 246777665444333
No 97
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=24.14 E-value=55 Score=31.51 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=30.4
Q ss_pred CCCeEEEE-EcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1425 TDHRVLFF-STMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1425 tGhKVLIF-SQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
.|.+|+-+ +...+.++.+. ...+..+.+|=.++..+--++++++++....+.|+++|
T Consensus 24 ~g~~v~~~a~~~~~al~~~~----~~~~dliilD~~mp~~~G~e~~~~ir~~~~~~pvi~ls 81 (118)
T d1u0sy_ 24 AGYEVAGEATNGREAVEKYK----ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCS 81 (118)
T ss_dssp TTCEEEEEESSHHHHHHHHH----HHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCceEEEECCHHHHHHHHH----hccCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 45666533 34444444443 24567777776666555555555554434445555555
No 98
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=24.03 E-value=50 Score=31.83 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCeEEEEEcchHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHhCCCCCceEEEee
Q 000047 1425 TDHRVLFFSTMTRLLDVMEDYLTFKQYRYLRLDGHTSGGDRGALIDKFNQQDSPFFIFLLS 1485 (2693)
Q Consensus 1425 tGhKVLIFSQft~tLDILed~L~~rGikylRLDGSTS~eERqeiId~FN~~dSd~fVfLLS 1485 (2693)
.|.+|..++.-.+.++.+.. ..+..+.+|-.++.-+=-+++++.+.......|+++|
T Consensus 24 ~g~~v~~a~~g~eal~~~~~----~~~dlillD~~mP~~~G~el~~~lr~~~~~~pvi~lt 80 (119)
T d1peya_ 24 EGYQTFQAANGLQALDIVTK----ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 80 (119)
T ss_dssp TTCEEEEESSHHHHHHHHHH----HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCEEEEeCCHHHHHHHHHh----CCCCEEEEeccCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 46666666655555544433 3466777776665444444455444433445555555
No 99
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=23.32 E-value=32 Score=34.51 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcch-------------HHHHHHHHHHhhcCCeEEEEe
Q 000047 1413 EMLDRLLPKLKATDHRVLFFSTMT-------------RLLDVMEDYLTFKQYRYLRLD 1457 (2693)
Q Consensus 1413 elLdeLL~kLkatGhKVLIFSQft-------------~tLDILed~L~~rGikylRLD 1457 (2693)
.-..+.|..+...||+++|||... ...+...++|...|++|-.|.
T Consensus 27 ~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Yd~Li 84 (124)
T d1xpja_ 27 LDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEIL 84 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 334577888889999999999762 346788899999999886664
No 100
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=20.57 E-value=43 Score=34.14 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=23.3
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhcCCCCCEEEEec
Q 000047 1113 ILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVP 1148 (2693)
Q Consensus 1113 ILADEMGLGKTIQAIALIa~Lle~k~~~gP~LIVVP 1148 (2693)
|-.-.+|.|||.+++.|+..|.+.+. .+|+|=|
T Consensus 6 i~gt~~GVGKTtvs~~La~aLa~~G~---rVl~id~ 38 (224)
T d1byia_ 6 VTGTDTEVGKTVASCALLQAAKAAGY---RTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEECCCCccHHHHHHHHHHHHHHCCC---eEEEECc
Confidence 34445799999999999988876532 2566643
Done!