Query 000049
Match_columns 2629
No_of_seqs 757 out of 3864
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 1.5E-54 3.2E-59 530.8 40.6 557 1205-1767 7-565 (569)
2 KOG1824 TATA-binding protein-i 100.0 1.8E-46 4E-51 463.2 86.1 1006 1497-2601 45-1200(1233)
3 KOG2171 Karyopherin (importin) 100.0 1.7E-44 3.7E-49 465.9 76.5 905 1057-2031 4-1002(1075)
4 KOG2171 Karyopherin (importin) 100.0 3.5E-41 7.5E-46 435.3 88.2 866 1131-2165 5-938 (1075)
5 KOG1824 TATA-binding protein-i 100.0 1.3E-35 2.7E-40 367.8 87.1 1068 1295-2545 42-1186(1233)
6 KOG1241 Karyopherin (importin) 100.0 7.8E-37 1.7E-41 374.3 50.3 648 1057-1769 1-766 (859)
7 PF12074 DUF3554: Domain of un 100.0 1.6E-35 3.4E-40 373.8 27.1 318 346-692 1-339 (339)
8 KOG2023 Nuclear transport rece 100.0 8.5E-30 1.9E-34 306.3 50.2 685 1620-2465 91-824 (885)
9 COG5215 KAP95 Karyopherin (imp 100.0 2.1E-27 4.5E-32 280.5 55.6 626 1055-1746 2-732 (858)
10 KOG2023 Nuclear transport rece 100.0 2.9E-27 6.4E-32 284.7 52.9 693 1421-2345 91-820 (885)
11 KOG0915 Uncharacterized conser 100.0 1.1E-25 2.3E-30 294.1 67.5 596 1921-2570 816-1494(1702)
12 PLN03200 cellulose synthase-in 100.0 3.3E-21 7.2E-26 270.9 109.0 1305 1132-2554 101-1607(2102)
13 KOG1241 Karyopherin (importin) 100.0 4.9E-25 1.1E-29 271.4 61.9 747 1509-2425 11-816 (859)
14 PLN03200 cellulose synthase-in 100.0 2.2E-21 4.8E-26 272.6 100.4 1374 1133-2581 16-1593(2102)
15 KOG0213 Splicing factor 3b, su 99.9 3.4E-20 7.4E-25 225.2 61.3 675 1215-1993 364-1064(1172)
16 KOG0915 Uncharacterized conser 99.9 1E-18 2.3E-23 229.6 77.6 649 1574-2340 816-1508(1702)
17 KOG0213 Splicing factor 3b, su 99.9 8.1E-20 1.7E-24 222.0 56.4 716 1428-2269 371-1118(1172)
18 KOG1242 Protein containing ada 99.9 3.8E-21 8.1E-26 237.8 37.3 515 1509-2097 27-558 (569)
19 COG5215 KAP95 Karyopherin (imp 99.9 5E-17 1.1E-21 193.5 63.0 665 1619-2430 94-819 (858)
20 COG5181 HSH155 U2 snRNP splice 99.9 4.7E-18 1E-22 203.3 49.1 666 1226-1993 178-869 (975)
21 COG5181 HSH155 U2 snRNP splice 99.8 1E-16 2.2E-21 192.1 51.1 712 1352-2181 182-946 (975)
22 KOG0211 Protein phosphatase 2A 99.8 6.5E-17 1.4E-21 212.2 43.0 558 1350-1996 94-666 (759)
23 KOG0211 Protein phosphatase 2A 99.7 2.3E-13 5E-18 179.2 39.8 529 1252-1802 119-662 (759)
24 KOG0212 Uncharacterized conser 99.6 8.1E-13 1.8E-17 159.4 36.0 425 1425-1918 5-448 (675)
25 KOG0212 Uncharacterized conser 99.6 1.7E-12 3.6E-17 156.8 38.5 464 1889-2463 4-485 (675)
26 KOG1943 Beta-tubulin folding c 99.6 1.8E-08 3.8E-13 131.8 71.9 586 1337-1997 119-790 (1133)
27 KOG1822 Uncharacterized conser 99.5 3.9E-07 8.5E-12 125.2 79.7 291 2285-2612 889-1199(2067)
28 KOG1248 Uncharacterized conser 99.5 1.4E-07 3.1E-12 125.3 71.7 756 1297-2195 90-911 (1176)
29 KOG1248 Uncharacterized conser 99.5 2.1E-07 4.6E-12 123.7 71.0 759 1640-2464 72-904 (1176)
30 KOG1943 Beta-tubulin folding c 99.4 6.8E-07 1.5E-11 117.5 68.6 712 1571-2423 67-840 (1133)
31 PF01602 Adaptin_N: Adaptin N 99.4 2.4E-09 5.3E-14 146.7 49.2 467 1379-1948 43-520 (526)
32 PF01602 Adaptin_N: Adaptin N 99.4 2.2E-09 4.7E-14 147.2 45.3 478 1332-1871 37-522 (526)
33 PTZ00429 beta-adaptin; Provisi 99.4 9.9E-09 2.1E-13 138.4 48.1 433 2074-2545 105-546 (746)
34 PTZ00429 beta-adaptin; Provisi 99.3 2.3E-07 5E-12 125.4 51.4 492 1226-1762 42-542 (746)
35 KOG1991 Nuclear transport rece 99.3 1.7E-06 3.7E-11 113.2 56.6 474 1055-1547 2-599 (1010)
36 KOG0166 Karyopherin (importin) 99.2 2E-09 4.4E-14 134.5 28.2 342 1422-1767 68-437 (514)
37 KOG1991 Nuclear transport rece 99.2 5.2E-05 1.1E-09 99.8 68.4 308 2053-2432 438-768 (1010)
38 PRK09687 putative lyase; Provi 99.2 7.9E-10 1.7E-14 134.2 23.6 253 1302-1644 25-278 (280)
39 PRK13800 putative oxidoreducta 99.2 1.3E-09 2.8E-14 155.0 27.8 273 1421-1762 622-895 (897)
40 PRK09687 putative lyase; Provi 99.2 1.6E-09 3.6E-14 131.5 22.8 252 1421-1721 24-278 (280)
41 PRK13800 putative oxidoreducta 99.2 3.5E-09 7.6E-14 150.6 29.1 274 1301-1645 622-896 (897)
42 KOG2274 Predicted importin 9 [ 99.1 7.2E-06 1.6E-10 106.1 50.5 560 1057-1649 4-690 (1005)
43 KOG0166 Karyopherin (importin) 99.1 2.7E-08 6E-13 124.6 27.1 346 1341-1725 70-436 (514)
44 KOG1992 Nuclear export recepto 99.0 8.7E-06 1.9E-10 104.1 47.4 654 1057-1749 5-775 (960)
45 KOG1060 Vesicle coat complex A 98.8 1.9E-05 4E-10 100.6 38.4 518 1890-2536 40-562 (968)
46 PF10508 Proteasom_PSMB: Prote 98.8 1.2E-05 2.7E-10 106.9 39.7 301 1425-1765 43-365 (503)
47 KOG1992 Nuclear export recepto 98.8 0.00064 1.4E-08 87.8 51.9 668 1511-2287 17-779 (960)
48 KOG0392 SNF2 family DNA-depend 98.7 0.0002 4.3E-09 95.7 46.1 177 2245-2423 749-928 (1549)
49 PF12348 CLASP_N: CLASP N term 98.7 2.9E-07 6.2E-12 110.8 19.3 200 1776-2000 8-212 (228)
50 PF12348 CLASP_N: CLASP N term 98.7 2.9E-07 6.3E-12 110.8 18.7 183 1347-1532 16-210 (228)
51 KOG1059 Vesicle coat complex A 98.7 0.00037 8.1E-09 88.4 44.0 252 1418-1686 142-400 (877)
52 KOG1062 Vesicle coat complex A 98.7 3.1E-05 6.7E-10 99.5 35.0 390 2075-2494 108-574 (866)
53 KOG0392 SNF2 family DNA-depend 98.7 0.00069 1.5E-08 90.9 48.1 131 2055-2186 798-929 (1549)
54 COG5064 SRP1 Karyopherin (impo 98.7 3.9E-07 8.6E-12 104.1 16.2 267 1338-1606 115-399 (526)
55 COG5064 SRP1 Karyopherin (impo 98.7 9E-07 2E-11 101.3 18.4 342 1421-1766 72-443 (526)
56 KOG1060 Vesicle coat complex A 98.6 0.0003 6.6E-09 90.0 41.9 469 1858-2447 50-522 (968)
57 KOG2274 Predicted importin 9 [ 98.6 0.0089 1.9E-07 78.6 63.4 316 2068-2423 443-783 (1005)
58 KOG0891 DNA-dependent protein 98.6 0.018 4E-07 86.0 63.7 150 1845-1998 566-723 (2341)
59 KOG4224 Armadillo repeat prote 98.6 7.4E-06 1.6E-10 94.9 23.5 364 1394-1766 63-446 (550)
60 KOG1062 Vesicle coat complex A 98.6 0.00018 3.9E-09 92.7 37.8 307 1422-1770 109-418 (866)
61 KOG1822 Uncharacterized conser 98.6 0.022 4.8E-07 80.6 77.5 462 1888-2379 879-1443(2067)
62 PF10508 Proteasom_PSMB: Prote 98.6 2.6E-05 5.7E-10 103.9 31.6 351 2234-2594 43-428 (503)
63 KOG4224 Armadillo repeat prote 98.6 3.6E-06 7.7E-11 97.5 19.6 301 1458-1762 85-401 (550)
64 KOG1020 Sister chromatid cohes 98.5 0.023 5E-07 78.7 60.9 154 1395-1554 793-948 (1692)
65 KOG1240 Protein kinase contain 98.5 5.4E-06 1.2E-10 109.7 21.7 275 1472-1806 437-727 (1431)
66 KOG1993 Nuclear transport rece 98.5 0.015 3.3E-07 75.3 60.1 219 1394-1653 412-649 (978)
67 KOG1967 DNA repair/transcripti 98.5 0.022 4.7E-07 75.3 62.2 153 2347-2500 865-1023(1030)
68 KOG1240 Protein kinase contain 98.5 1.2E-05 2.6E-10 106.5 23.1 296 1378-1729 422-729 (1431)
69 KOG1020 Sister chromatid cohes 98.4 0.044 9.5E-07 76.2 59.1 300 2244-2552 1051-1412(1692)
70 COG5240 SEC21 Vesicle coat com 98.4 0.0026 5.7E-08 78.5 38.4 288 1842-2181 262-554 (898)
71 PF12755 Vac14_Fab1_bd: Vacuol 98.4 1.7E-06 3.6E-11 86.2 9.8 93 1395-1526 2-94 (97)
72 KOG0413 Uncharacterized conser 98.3 0.025 5.4E-07 74.1 47.8 134 2283-2424 942-1077(1529)
73 KOG2021 Nuclear mRNA export fa 98.3 0.031 6.8E-07 72.0 52.1 256 1455-1747 437-748 (980)
74 PF12460 MMS19_C: RNAPII trans 98.3 0.0005 1.1E-08 90.0 34.7 361 1340-1745 2-414 (415)
75 KOG1820 Microtubule-associated 98.3 1.5E-05 3.3E-10 107.4 20.5 339 1621-2007 100-456 (815)
76 KOG2062 26S proteasome regulat 98.3 0.025 5.4E-07 72.8 45.1 281 1636-1981 396-681 (929)
77 PF12460 MMS19_C: RNAPII trans 98.3 0.0012 2.6E-08 86.5 36.1 225 2071-2320 186-413 (415)
78 KOG1061 Vesicle coat complex A 98.3 0.0012 2.6E-08 85.9 34.6 435 1454-1991 45-486 (734)
79 KOG1059 Vesicle coat complex A 98.3 0.012 2.7E-07 75.3 41.5 257 2108-2380 140-403 (877)
80 COG5240 SEC21 Vesicle coat com 98.2 0.036 7.8E-07 69.0 43.3 185 1571-1767 259-443 (898)
81 KOG4535 HEAT and armadillo rep 98.2 0.0013 2.8E-08 79.6 30.5 508 1858-2420 10-603 (728)
82 COG5656 SXM1 Importin, protein 98.2 0.059 1.3E-06 69.6 46.6 338 1357-1699 389-769 (970)
83 KOG1061 Vesicle coat complex A 98.2 0.0027 5.9E-08 82.8 34.8 402 1293-1761 78-484 (734)
84 PF12755 Vac14_Fab1_bd: Vacuol 98.1 7.6E-06 1.6E-10 81.6 8.6 87 1474-1560 2-91 (97)
85 KOG2062 26S proteasome regulat 98.1 0.00066 1.4E-08 86.4 27.1 279 1234-1551 397-679 (929)
86 KOG4535 HEAT and armadillo rep 98.1 0.02 4.4E-07 69.8 37.3 489 1751-2298 10-600 (728)
87 KOG1967 DNA repair/transcripti 98.1 0.13 2.7E-06 68.6 63.9 144 2226-2370 864-1016(1030)
88 KOG0414 Chromosome condensatio 98.0 0.18 3.9E-06 69.0 58.1 636 1888-2558 315-1076(1251)
89 KOG1077 Vesicle coat complex A 98.0 0.056 1.2E-06 69.2 40.1 455 1881-2416 107-583 (938)
90 KOG1820 Microtubule-associated 97.9 0.00075 1.6E-08 91.5 23.1 205 2228-2434 252-457 (815)
91 KOG0414 Chromosome condensatio 97.8 0.39 8.6E-06 65.9 61.1 181 2227-2419 917-1102(1251)
92 KOG2956 CLIP-associating prote 97.8 0.001 2.2E-08 81.3 19.8 198 1335-1536 284-485 (516)
93 KOG0413 Uncharacterized conser 97.8 0.34 7.4E-06 64.1 43.8 122 2470-2601 966-1088(1529)
94 KOG2259 Uncharacterized conser 97.8 0.0012 2.5E-08 83.4 20.1 226 1701-1948 203-471 (823)
95 TIGR02270 conserved hypothetic 97.8 0.0026 5.6E-08 81.5 23.8 145 1579-1764 150-294 (410)
96 PF05804 KAP: Kinesin-associat 97.7 0.033 7.1E-07 75.5 34.6 371 1381-1766 253-649 (708)
97 TIGR02270 conserved hypothetic 97.7 0.0039 8.5E-08 79.9 24.4 209 1380-1648 88-296 (410)
98 KOG2259 Uncharacterized conser 97.7 0.00086 1.9E-08 84.5 17.6 279 2318-2617 203-500 (823)
99 COG1413 FOG: HEAT repeat [Ener 97.7 0.0035 7.6E-08 80.4 24.1 216 1379-1648 75-304 (335)
100 COG1413 FOG: HEAT repeat [Ener 97.7 0.006 1.3E-07 78.3 26.2 201 1420-1670 43-257 (335)
101 COG5096 Vesicle coat complex, 97.7 0.41 9E-06 64.7 42.5 104 1883-1994 53-156 (757)
102 KOG1078 Vesicle coat complex C 97.7 0.08 1.7E-06 69.2 34.4 282 2108-2419 241-531 (865)
103 KOG2032 Uncharacterized conser 97.7 0.047 1E-06 67.9 30.8 142 1844-1985 258-407 (533)
104 COG5096 Vesicle coat complex, 97.7 0.47 1E-05 64.2 42.5 166 1467-1649 28-196 (757)
105 PF13513 HEAT_EZ: HEAT-like re 97.6 4.8E-05 1E-09 68.1 3.7 55 1472-1526 1-55 (55)
106 KOG1078 Vesicle coat complex C 97.6 0.23 4.9E-06 65.2 37.2 313 1383-1729 69-387 (865)
107 KOG1058 Vesicle coat complex C 97.6 0.11 2.5E-06 67.2 33.6 93 1855-1952 370-463 (948)
108 PF08623 TIP120: TATA-binding 97.6 0.00025 5.3E-09 77.6 9.1 117 2480-2602 35-164 (169)
109 KOG1077 Vesicle coat complex A 97.6 0.62 1.3E-05 60.3 40.1 351 1348-1742 84-450 (938)
110 KOG0891 DNA-dependent protein 97.5 2.2 4.8E-05 65.2 64.1 391 1844-2315 648-1055(2341)
111 KOG2032 Uncharacterized conser 97.5 0.1 2.2E-06 65.1 29.9 190 1421-1653 182-376 (533)
112 KOG4413 26S proteasome regulat 97.4 0.16 3.4E-06 59.4 29.5 90 1904-1993 62-156 (524)
113 KOG2956 CLIP-associating prote 97.4 0.0058 1.3E-07 75.0 19.0 199 2234-2434 291-491 (516)
114 KOG2022 Nuclear transport rece 97.4 1.1 2.4E-05 59.9 60.1 265 1436-1747 440-756 (982)
115 KOG1058 Vesicle coat complex C 97.3 0.012 2.6E-07 75.7 20.7 308 2075-2424 100-429 (948)
116 PF12717 Cnd1: non-SMC mitotic 97.3 0.0075 1.6E-07 69.0 17.5 110 2242-2360 1-112 (178)
117 PF05804 KAP: Kinesin-associat 97.3 1.1 2.3E-05 61.4 39.3 131 1473-1605 264-399 (708)
118 PF05004 IFRD: Interferon-rela 97.2 0.018 3.8E-07 71.6 20.5 190 2231-2421 45-258 (309)
119 PF10274 ParcG: Parkin co-regu 97.1 0.002 4.3E-08 71.3 9.8 92 2227-2319 36-130 (183)
120 KOG4653 Uncharacterized conser 97.1 0.029 6.4E-07 73.6 21.5 222 1699-1950 730-962 (982)
121 KOG2025 Chromosome condensatio 97.1 1.8 3.9E-05 56.5 42.4 226 1755-2029 60-290 (892)
122 KOG1993 Nuclear transport rece 97.0 2.3 4.9E-05 56.4 58.9 305 1855-2164 408-751 (978)
123 cd00020 ARM Armadillo/beta-cat 97.0 0.003 6.6E-08 67.2 10.3 107 1421-1527 8-119 (120)
124 KOG0168 Putative ubiquitin fus 97.0 0.33 7.1E-06 64.1 29.4 195 1337-1531 167-367 (1051)
125 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00063 1.4E-08 60.9 3.7 55 1393-1447 1-55 (55)
126 KOG4653 Uncharacterized conser 97.0 0.057 1.2E-06 71.1 22.3 223 1930-2183 734-965 (982)
127 PF12717 Cnd1: non-SMC mitotic 97.0 0.024 5.3E-07 64.9 17.5 109 2326-2438 1-110 (178)
128 cd00020 ARM Armadillo/beta-cat 97.0 0.0028 6E-08 67.5 9.3 112 1458-1604 7-119 (120)
129 COG5116 RPN2 26S proteasome re 97.0 0.022 4.8E-07 70.6 17.2 228 1297-1550 443-675 (926)
130 PF05918 API5: Apoptosis inhib 97.0 0.24 5.1E-06 65.0 27.6 292 2240-2549 33-349 (556)
131 PF05004 IFRD: Interferon-rela 96.9 0.034 7.4E-07 69.2 19.3 191 1460-1651 45-260 (309)
132 PF13646 HEAT_2: HEAT repeats; 96.9 0.0025 5.5E-08 63.6 7.7 86 1422-1524 1-88 (88)
133 KOG1525 Sister chromatid cohes 96.8 5.8 0.00012 57.5 50.7 179 2107-2289 254-441 (1266)
134 KOG1525 Sister chromatid cohes 96.8 6.1 0.00013 57.3 52.6 234 1398-1636 200-441 (1266)
135 KOG0567 HEAT repeat-containing 96.8 0.071 1.5E-06 61.4 18.3 244 1422-1731 38-286 (289)
136 KOG0946 ER-Golgi vesicle-tethe 96.7 4.1 8.9E-05 54.1 41.8 361 1335-1721 20-433 (970)
137 PF13646 HEAT_2: HEAT repeats; 96.6 0.0089 1.9E-07 59.6 9.3 87 1578-1683 1-88 (88)
138 KOG1293 Proteins containing ar 96.6 4.2 9.1E-05 53.2 36.3 423 1394-1878 68-538 (678)
139 KOG0168 Putative ubiquitin fus 96.6 1.4 3E-05 58.6 29.8 193 2230-2423 168-367 (1051)
140 KOG2933 Uncharacterized conser 96.6 0.02 4.3E-07 67.3 12.4 179 1459-1642 89-271 (334)
141 KOG4524 Uncharacterized conser 96.5 4.1 8.8E-05 55.6 34.4 84 1851-1934 810-900 (1014)
142 PF14500 MMS19_N: Dos2-interac 96.5 0.5 1.1E-05 57.3 24.4 240 2117-2400 4-259 (262)
143 KOG4413 26S proteasome regulat 96.4 0.86 1.9E-05 53.6 23.9 327 1191-1528 54-439 (524)
144 PF04826 Arm_2: Armadillo-like 96.4 0.096 2.1E-06 62.9 17.3 187 1461-1653 15-210 (254)
145 KOG0889 Histone acetyltransfer 96.4 16 0.00035 57.1 46.2 657 1654-2440 630-1370(3550)
146 PF12719 Cnd3: Nuclear condens 96.3 0.56 1.2E-05 58.7 24.7 129 2293-2421 4-144 (298)
147 KOG0567 HEAT repeat-containing 96.2 0.44 9.6E-06 55.2 20.3 94 2074-2184 187-282 (289)
148 KOG2025 Chromosome condensatio 96.2 7.3 0.00016 51.3 45.0 206 1415-1645 80-291 (892)
149 PF02985 HEAT: HEAT repeat; I 95.9 0.011 2.4E-07 45.6 3.9 30 1500-1529 1-30 (31)
150 PF05918 API5: Apoptosis inhib 95.9 4.9 0.00011 53.2 29.9 129 1672-1806 36-164 (556)
151 PF14500 MMS19_N: Dos2-interac 95.8 1.4 2.9E-05 53.6 23.4 236 1742-2013 4-256 (262)
152 PF04826 Arm_2: Armadillo-like 95.8 0.3 6.5E-06 58.7 17.6 193 1336-1532 11-209 (254)
153 PF13001 Ecm29: Proteasome sta 95.8 3.9 8.5E-05 55.0 30.1 97 1611-1707 15-113 (501)
154 PF03378 CAS_CSE1: CAS/CSE pro 95.8 1.4 3E-05 57.6 24.8 238 2066-2340 18-270 (435)
155 KOG1243 Protein kinase [Genera 95.7 0.12 2.5E-06 67.6 14.4 188 1573-1767 327-516 (690)
156 KOG1243 Protein kinase [Genera 95.6 0.13 2.9E-06 67.1 14.2 256 2234-2504 259-518 (690)
157 PF03378 CAS_CSE1: CAS/CSE pro 95.4 3 6.6E-05 54.5 26.0 369 2144-2557 17-422 (435)
158 PF11864 DUF3384: Domain of un 95.3 17 0.00036 48.8 34.0 289 1352-1651 4-334 (464)
159 PLN03076 ARF guanine nucleotid 95.3 6.9 0.00015 59.2 31.5 296 1895-2191 1147-1498(1780)
160 PF13001 Ecm29: Proteasome sta 95.2 12 0.00025 50.6 31.4 390 1490-1918 14-447 (501)
161 PF08506 Cse1: Cse1; InterPro 95.2 0.52 1.1E-05 60.1 17.8 127 1858-1989 225-370 (370)
162 PF12719 Cnd3: Nuclear condens 95.2 0.93 2E-05 56.8 19.8 113 2391-2504 26-146 (298)
163 PF13251 DUF4042: Domain of un 95.2 0.14 3.1E-06 57.6 11.1 126 1505-1650 46-176 (182)
164 KOG1949 Uncharacterized conser 95.0 0.53 1.2E-05 60.7 16.2 150 1575-1725 173-331 (1005)
165 PF01347 Vitellogenin_N: Lipop 94.9 1.2 2.6E-05 62.6 22.1 215 1323-1562 348-586 (618)
166 PF08506 Cse1: Cse1; InterPro 94.9 1.6 3.5E-05 55.8 20.7 130 1349-1481 222-369 (370)
167 PF10274 ParcG: Parkin co-regu 94.9 0.31 6.7E-06 54.5 12.4 116 1885-2000 38-170 (183)
168 PF13251 DUF4042: Domain of un 94.8 0.27 5.8E-06 55.5 12.0 136 1859-1994 1-174 (182)
169 COG5116 RPN2 26S proteasome re 94.8 0.85 1.8E-05 57.4 17.0 117 1852-1980 560-677 (926)
170 KOG1517 Guanine nucleotide bin 94.8 0.36 7.9E-06 64.9 14.6 219 2328-2548 485-735 (1387)
171 PLN03076 ARF guanine nucleotid 94.7 11 0.00023 57.2 31.1 299 2288-2587 1108-1490(1780)
172 COG5218 YCG1 Chromosome conden 94.7 19 0.00041 46.4 43.7 175 1573-1763 88-263 (885)
173 KOG2081 Nuclear transport regu 94.6 21 0.00045 46.5 35.2 226 1301-1535 200-465 (559)
174 KOG2160 Armadillo/beta-catenin 94.6 0.83 1.8E-05 55.9 16.1 178 2284-2461 95-285 (342)
175 PF02985 HEAT: HEAT repeat; I 94.6 0.056 1.2E-06 41.7 4.2 30 1620-1649 1-30 (31)
176 PF08167 RIX1: rRNA processing 94.5 1 2.2E-05 50.8 15.9 77 2108-2184 21-99 (165)
177 PF12231 Rif1_N: Rap1-interact 94.5 21 0.00046 46.2 32.7 242 1614-1873 34-303 (372)
178 KOG1851 Uncharacterized conser 94.4 26 0.00056 50.8 31.3 173 1355-1531 1504-1681(1710)
179 KOG2933 Uncharacterized conser 94.2 0.78 1.7E-05 54.5 14.1 138 1387-1531 97-237 (334)
180 COG5218 YCG1 Chromosome conden 93.8 28 0.00061 45.0 46.7 214 1414-1647 43-265 (885)
181 KOG1949 Uncharacterized conser 93.6 8.8 0.00019 50.3 22.7 165 1303-1472 177-355 (1005)
182 cd00256 VATPase_H VATPase_H, r 93.6 8.8 0.00019 49.7 23.4 67 1886-1952 354-425 (429)
183 PF12054 DUF3535: Domain of un 93.5 8.2 0.00018 50.8 23.5 220 1900-2121 102-363 (441)
184 KOG0946 ER-Golgi vesicle-tethe 93.4 40 0.00087 45.5 37.6 73 1846-1918 124-199 (970)
185 PF08167 RIX1: rRNA processing 93.3 2.2 4.7E-05 48.2 15.6 139 2230-2400 26-164 (165)
186 smart00638 LPD_N Lipoprotein N 93.3 5.7 0.00012 55.1 23.3 165 1378-1562 357-542 (574)
187 COG5095 TAF6 Transcription ini 93.1 1.7 3.6E-05 50.7 14.0 109 2249-2359 256-382 (450)
188 KOG1517 Guanine nucleotide bin 92.9 1.8 3.8E-05 58.8 15.8 211 1299-1529 511-733 (1387)
189 PF11865 DUF3385: Domain of un 92.7 0.84 1.8E-05 51.0 11.1 143 1617-1765 8-156 (160)
190 PF04118 Dopey_N: Dopey, N-ter 92.6 14 0.00031 45.7 22.3 218 1338-1562 11-251 (307)
191 PF05536 Neurochondrin: Neuroc 92.3 57 0.0012 44.4 35.8 245 1337-1653 5-266 (543)
192 COG5656 SXM1 Importin, protein 92.3 53 0.0012 44.0 64.3 293 2075-2398 461-777 (970)
193 cd00256 VATPase_H VATPase_H, r 92.3 46 0.001 43.3 29.8 69 2472-2545 353-425 (429)
194 PF11865 DUF3385: Domain of un 92.1 1.4 3.1E-05 49.2 11.9 109 2311-2420 8-157 (160)
195 PF12231 Rif1_N: Rap1-interact 91.9 49 0.0011 42.9 30.0 76 2225-2300 270-351 (372)
196 KOG2137 Protein kinase [Signal 91.8 6.6 0.00014 52.4 18.8 169 1337-1510 349-519 (700)
197 KOG2549 Transcription initiati 91.6 5.2 0.00011 51.5 16.9 112 1864-1975 267-393 (576)
198 PF12530 DUF3730: Protein of u 91.2 37 0.00081 40.8 23.6 203 2275-2490 4-221 (234)
199 PF01347 Vitellogenin_N: Lipop 91.0 5.7 0.00012 55.8 19.3 138 2443-2601 449-601 (618)
200 KOG2021 Nuclear mRNA export fa 90.9 73 0.0016 42.9 59.4 342 1589-1975 206-586 (980)
201 PF04118 Dopey_N: Dopey, N-ter 90.9 22 0.00048 44.1 21.5 197 1657-1873 54-254 (307)
202 PF01603 B56: Protein phosphat 90.8 6.4 0.00014 51.5 17.8 115 2230-2345 256-373 (409)
203 KOG2137 Protein kinase [Signal 90.8 5.6 0.00012 53.0 16.8 169 1575-1747 348-518 (700)
204 KOG1293 Proteins containing ar 90.6 73 0.0016 42.5 34.9 110 1844-1953 419-534 (678)
205 PF12074 DUF3554: Domain of un 90.3 12 0.00027 47.9 19.8 98 1883-1980 20-122 (339)
206 cd08050 TAF6 TATA Binding Prot 90.3 4.3 9.2E-05 51.7 15.1 75 1612-1686 251-339 (343)
207 KOG2160 Armadillo/beta-catenin 90.3 10 0.00022 46.8 17.3 180 1588-1769 95-285 (342)
208 KOG1048 Neural adherens juncti 89.3 34 0.00074 46.5 22.3 109 2074-2183 233-350 (717)
209 PF08623 TIP120: TATA-binding 89.3 3.4 7.4E-05 46.0 11.3 116 1414-1530 3-149 (169)
210 KOG2122 Beta-catenin-binding p 89.1 76 0.0017 45.9 25.4 73 2515-2588 529-603 (2195)
211 KOG1851 Uncharacterized conser 88.6 1.6E+02 0.0035 43.5 35.5 94 1901-1994 1503-1598(1710)
212 smart00638 LPD_N Lipoprotein N 88.5 24 0.00052 49.0 22.0 142 2442-2601 410-557 (574)
213 PF10521 DUF2454: Protein of u 88.5 7.7 0.00017 48.1 15.2 150 2252-2403 99-277 (282)
214 PF08064 UME: UME (NUC010) dom 88.3 3.6 7.9E-05 42.5 10.2 77 1669-1746 26-105 (107)
215 COG5095 TAF6 Transcription ini 88.2 10 0.00023 44.5 14.5 149 1335-1487 195-359 (450)
216 PF10363 DUF2435: Protein of u 88.1 2.5 5.3E-05 42.2 8.4 82 2113-2195 4-85 (92)
217 COG5234 CIN1 Beta-tubulin fold 88.0 1.1E+02 0.0024 40.9 25.2 223 1297-1529 243-492 (993)
218 COG5657 CSE1 CAS/CSE protein i 88.0 1.3E+02 0.0028 41.8 38.9 106 1062-1175 9-131 (947)
219 PF10363 DUF2435: Protein of u 87.2 4.2 9.2E-05 40.6 9.5 81 1698-1779 5-85 (92)
220 KOG1837 Uncharacterized conser 87.2 1.5E+02 0.0032 43.9 27.0 66 2514-2579 1539-1604(1621)
221 KOG2549 Transcription initiati 87.1 10 0.00022 49.0 14.8 171 2229-2403 207-395 (576)
222 KOG2081 Nuclear transport regu 86.6 1.2E+02 0.0026 39.9 42.3 148 1844-1998 291-461 (559)
223 COG5234 CIN1 Beta-tubulin fold 86.4 1.3E+02 0.0029 40.2 25.5 170 1631-1803 208-415 (993)
224 cd08050 TAF6 TATA Binding Prot 86.3 11 0.00023 48.1 15.1 114 2225-2339 206-337 (343)
225 KOG4199 Uncharacterized conser 86.3 90 0.0019 38.1 23.3 156 1339-1529 285-445 (461)
226 PF08064 UME: UME (NUC010) dom 86.3 6.4 0.00014 40.7 10.6 86 1378-1465 11-99 (107)
227 KOG0803 Predicted E3 ubiquitin 85.5 28 0.0006 51.0 19.6 108 1883-1991 39-150 (1312)
228 PF10521 DUF2454: Protein of u 85.4 14 0.0003 45.8 15.1 142 1609-1750 109-278 (282)
229 KOG2022 Nuclear transport rece 85.1 1.8E+02 0.0038 40.4 74.6 276 2224-2502 544-868 (982)
230 PF11864 DUF3384: Domain of un 85.1 1.5E+02 0.0033 39.7 38.3 262 2072-2376 174-464 (464)
231 KOG2149 Uncharacterized conser 84.7 8.8 0.00019 48.0 12.4 115 1888-2002 61-178 (393)
232 PF12726 SEN1_N: SEN1 N termin 84.6 2.1E+02 0.0046 40.9 32.3 114 2469-2586 438-553 (727)
233 KOG1823 DRIM (Down-regulated i 84.5 2.4E+02 0.0052 41.5 46.8 255 2141-2439 795-1050(1364)
234 KOG3961 Uncharacterized conser 84.4 2.1 4.5E-05 47.9 6.3 90 2227-2318 112-204 (262)
235 KOG1837 Uncharacterized conser 83.9 2.6E+02 0.0057 41.5 33.3 66 2110-2175 1539-1604(1621)
236 PF14664 RICTOR_N: Rapamycin-i 83.8 67 0.0015 41.4 20.5 183 2403-2590 80-273 (371)
237 PF12530 DUF3730: Protein of u 82.8 96 0.0021 37.3 20.2 130 1308-1449 9-151 (234)
238 KOG2973 Uncharacterized conser 82.5 69 0.0015 38.8 17.7 101 1503-1605 7-111 (353)
239 PF12054 DUF3535: Domain of un 82.3 1.3E+02 0.0029 39.8 22.8 76 2090-2165 103-180 (441)
240 KOG2213 Apoptosis inhibitor 5/ 82.2 1.5E+02 0.0032 37.3 21.3 237 1736-1997 60-317 (460)
241 KOG1048 Neural adherens juncti 81.0 1.7E+02 0.0036 40.3 22.7 96 1857-1953 532-642 (717)
242 smart00802 UME Domain in UVSB 80.8 12 0.00027 38.5 9.8 75 1671-1746 28-105 (107)
243 KOG1848 Uncharacterized conser 80.6 50 0.0011 47.4 18.1 214 1312-1528 854-1132(1610)
244 KOG0803 Predicted E3 ubiquitin 80.5 1.3E+02 0.0029 44.5 23.2 111 2072-2182 39-153 (1312)
245 smart00802 UME Domain in UVSB 80.2 17 0.00037 37.5 10.6 85 1378-1464 11-98 (107)
246 PF08389 Xpo1: Exportin 1-like 80.1 12 0.00025 41.4 10.7 146 1144-1324 2-148 (148)
247 KOG4199 Uncharacterized conser 79.4 1.6E+02 0.0035 36.1 26.0 56 2529-2584 387-442 (461)
248 PF00514 Arm: Armadillo/beta-c 79.1 2.9 6.4E-05 34.7 4.0 30 1498-1527 11-40 (41)
249 PF03224 V-ATPase_H_N: V-ATPas 78.5 1.8E+02 0.0038 36.9 21.7 64 2123-2186 68-138 (312)
250 KOG1222 Kinesin associated pro 78.3 2.1E+02 0.0045 36.6 28.1 114 1398-1511 282-398 (791)
251 PF08161 NUC173: NUC173 domain 77.9 18 0.00039 42.0 11.3 67 1592-1660 16-82 (198)
252 KOG2149 Uncharacterized conser 77.6 32 0.00069 43.3 13.8 122 1850-1972 64-189 (393)
253 PF14225 MOR2-PAG1_C: Cell mor 76.2 2E+02 0.0042 35.3 21.4 184 2108-2305 60-258 (262)
254 PF08569 Mo25: Mo25-like; Int 75.5 2.4E+02 0.0052 35.9 22.6 216 1616-1896 73-308 (335)
255 PF14631 FancD2: Fanconi anaem 75.4 4.6E+02 0.0099 40.2 27.0 153 2345-2504 431-586 (1426)
256 KOG1877 Putative transmembrane 74.9 55 0.0012 45.2 16.0 173 1841-2015 14-205 (819)
257 PF08713 DNA_alkylation: DNA a 73.7 71 0.0015 37.8 15.6 145 2390-2557 50-196 (213)
258 PF05536 Neurochondrin: Neuroc 73.7 3.5E+02 0.0076 37.0 39.5 180 2126-2342 71-261 (543)
259 KOG4500 Rho/Rac GTPase guanine 73.7 2.6E+02 0.0057 35.5 30.6 73 2430-2502 316-391 (604)
260 PF08767 CRM1_C: CRM1 C termin 72.9 76 0.0017 40.1 16.1 137 2244-2382 42-198 (319)
261 PF12830 Nipped-B_C: Sister ch 72.5 56 0.0012 37.8 13.6 79 2470-2555 6-84 (187)
262 PF11698 V-ATPase_H_C: V-ATPas 72.0 14 0.00029 38.7 7.4 57 1936-1994 57-115 (119)
263 cd03568 VHS_STAM VHS domain fa 71.4 69 0.0015 35.2 13.2 94 2107-2200 32-128 (144)
264 COG5098 Chromosome condensatio 71.3 3.7E+02 0.008 36.2 63.9 104 2229-2342 933-1037(1128)
265 KOG2213 Apoptosis inhibitor 5/ 70.2 3E+02 0.0065 34.8 26.6 268 2116-2421 29-315 (460)
266 PF08161 NUC173: NUC173 domain 68.6 97 0.0021 36.1 14.3 70 1396-1465 17-86 (198)
267 PF03224 V-ATPase_H_N: V-ATPas 68.5 1.2E+02 0.0027 38.3 16.8 116 1588-1705 69-200 (312)
268 PF14225 MOR2-PAG1_C: Cell mor 68.0 2.9E+02 0.0064 33.8 21.0 169 1573-1750 61-241 (262)
269 cd07064 AlkD_like_1 A new stru 67.6 66 0.0014 37.9 13.0 147 2390-2558 45-192 (208)
270 COG5098 Chromosome condensatio 67.0 4.4E+02 0.0096 35.5 60.7 127 2284-2419 908-1036(1128)
271 KOG4524 Uncharacterized conser 67.0 5.4E+02 0.012 36.5 49.8 276 2053-2345 568-879 (1014)
272 cd03568 VHS_STAM VHS domain fa 66.5 61 0.0013 35.6 11.5 74 1378-1452 37-113 (144)
273 PF08389 Xpo1: Exportin 1-like 66.0 60 0.0013 35.6 12.0 122 1902-2024 5-147 (148)
274 cd03572 ENTH_epsin_related ENT 65.1 50 0.0011 35.0 9.9 75 2108-2182 34-119 (122)
275 PF08767 CRM1_C: CRM1 C termin 64.5 3.3E+02 0.0072 34.5 19.3 121 1858-1978 90-227 (319)
276 PF04388 Hamartin: Hamartin pr 64.5 40 0.00086 47.0 12.0 156 2154-2322 5-161 (668)
277 KOG2973 Uncharacterized conser 64.2 3.5E+02 0.0075 33.3 18.5 98 1851-1950 10-109 (353)
278 PF12765 Cohesin_HEAT: HEAT re 61.5 9.3 0.0002 32.0 3.2 40 1482-1523 3-42 (42)
279 PF09324 DUF1981: Domain of un 60.2 23 0.00049 35.1 6.2 69 2270-2338 16-84 (86)
280 PF01603 B56: Protein phosphat 58.6 5.6E+02 0.012 33.8 23.0 263 2285-2553 103-378 (409)
281 PF11698 V-ATPase_H_C: V-ATPas 58.6 37 0.0008 35.6 7.5 67 2313-2379 43-116 (119)
282 KOG3961 Uncharacterized conser 58.5 23 0.0005 40.1 6.4 88 1456-1543 112-205 (262)
283 PF07539 DRIM: Down-regulated 58.1 41 0.00089 36.7 8.2 81 1499-1585 17-97 (141)
284 KOG2011 Sister chromatid cohes 56.8 5.8E+02 0.013 37.0 20.5 133 2400-2541 296-431 (1048)
285 KOG1848 Uncharacterized conser 56.6 2.6E+02 0.0057 40.9 17.0 227 1393-1649 856-1133(1610)
286 cd03567 VHS_GGA VHS domain fam 56.1 1.5E+02 0.0032 32.5 12.0 73 1378-1451 38-118 (139)
287 cd03569 VHS_Hrs_Vps27p VHS dom 55.5 1.5E+02 0.0033 32.5 12.2 74 1378-1452 41-117 (142)
288 cd03572 ENTH_epsin_related ENT 55.1 89 0.0019 33.1 9.7 46 1692-1737 34-79 (122)
289 KOG2759 Vacuolar H+-ATPase V1 54.8 5.8E+02 0.013 32.9 19.8 293 2232-2543 117-436 (442)
290 PF12830 Nipped-B_C: Sister ch 54.8 1.6E+02 0.0034 34.1 12.9 73 1883-1956 6-78 (187)
291 PF00790 VHS: VHS domain; Int 53.6 96 0.0021 34.0 10.4 73 1378-1451 42-120 (140)
292 cd00197 VHS_ENTH_ANTH VHS, ENT 53.6 90 0.002 32.8 9.9 101 1342-1446 4-112 (115)
293 cd03569 VHS_Hrs_Vps27p VHS dom 53.4 2.5E+02 0.0054 30.9 13.4 81 2107-2187 36-119 (142)
294 KOG0890 Protein kinase of the 53.1 1.3E+03 0.029 36.5 25.2 174 2241-2424 933-1117(2382)
295 PF07571 DUF1546: Protein of u 52.6 48 0.001 33.3 7.1 57 2284-2340 18-76 (92)
296 smart00288 VHS Domain present 52.4 1.2E+02 0.0026 32.9 10.7 88 2226-2316 34-124 (133)
297 PF00790 VHS: VHS domain; Int 51.8 3E+02 0.0065 30.2 13.9 80 2107-2186 37-122 (140)
298 cd03561 VHS VHS domain family; 50.8 1.8E+02 0.0039 31.5 11.9 74 1378-1452 37-115 (133)
299 PF08146 BP28CT: BP28CT (NUC21 50.6 1.7E+02 0.0037 32.6 11.7 76 2089-2164 36-119 (153)
300 smart00185 ARM Armadillo/beta- 49.1 22 0.00048 29.1 3.6 30 1498-1527 11-40 (41)
301 PF07571 DUF1546: Protein of u 48.5 47 0.001 33.4 6.3 55 1896-1950 17-76 (92)
302 smart00288 VHS Domain present 48.0 2.9E+02 0.0063 30.0 12.8 79 2107-2185 32-114 (133)
303 PF11229 DUF3028: Protein of u 47.9 8E+02 0.017 32.4 23.4 310 2054-2432 18-361 (589)
304 PF14868 DUF4487: Domain of un 47.3 9.2E+02 0.02 33.0 23.9 89 2098-2186 465-556 (559)
305 PF12765 Cohesin_HEAT: HEAT re 46.8 33 0.00071 28.8 4.1 24 1420-1443 18-41 (42)
306 PF12333 Ipi1_N: Rix1 complex 46.8 1.2E+02 0.0026 31.2 9.1 58 282-339 5-65 (102)
307 cd03565 VHS_Tom1 VHS domain fa 46.6 2.5E+02 0.0054 30.9 12.0 75 1378-1452 38-118 (141)
308 KOG2122 Beta-catenin-binding p 46.5 1.3E+03 0.029 34.6 25.4 189 1575-1767 393-602 (2195)
309 PF00514 Arm: Armadillo/beta-c 46.5 32 0.0007 28.5 4.1 30 2516-2545 12-41 (41)
310 PF14868 DUF4487: Domain of un 45.6 9.7E+02 0.021 32.8 24.6 87 1565-1651 468-555 (559)
311 PF11919 DUF3437: Domain of un 45.3 26 0.00055 34.9 3.8 59 1473-1532 4-62 (90)
312 PF12333 Ipi1_N: Rix1 complex 45.0 65 0.0014 33.1 6.9 59 1611-1669 3-65 (102)
313 KOG2085 Serine/threonine prote 44.8 8E+02 0.017 31.5 22.9 126 2230-2359 300-428 (457)
314 PF04388 Hamartin: Hamartin pr 44.7 2.7E+02 0.0058 39.1 14.9 85 1378-1466 70-156 (668)
315 cd03561 VHS VHS domain family; 43.6 2.9E+02 0.0063 29.9 12.1 77 1922-1998 36-116 (133)
316 KOG1823 DRIM (Down-regulated i 43.2 1.5E+03 0.032 34.2 45.2 178 1572-1754 803-989 (1364)
317 cd03567 VHS_GGA VHS domain fam 43.0 2.7E+02 0.0058 30.5 11.5 79 2107-2185 33-119 (139)
318 PF08713 DNA_alkylation: DNA a 41.3 2.2E+02 0.0048 33.5 12.0 29 1419-1447 154-182 (213)
319 PF11701 UNC45-central: Myosin 39.7 1.1E+02 0.0024 34.3 8.3 115 1432-1546 17-137 (157)
320 KOG4500 Rho/Rac GTPase guanine 38.7 9.8E+02 0.021 30.8 29.4 32 1498-1529 314-345 (604)
321 KOG1877 Putative transmembrane 38.3 3.6E+02 0.0078 37.8 13.9 79 1469-1547 67-150 (819)
322 KOG3687 Tuberin - Rap/ran-GTPa 37.3 7.5E+02 0.016 34.9 15.9 77 1192-1268 445-525 (1697)
323 PF11701 UNC45-central: Myosin 36.7 58 0.0013 36.5 5.5 129 1313-1444 18-154 (157)
324 cd06561 AlkD_like A new struct 36.5 7.3E+02 0.016 28.7 17.1 79 2475-2561 108-186 (197)
325 KOG2199 Signal transducing ada 33.4 3.8E+02 0.0083 33.8 11.7 105 2094-2200 29-136 (462)
326 PF12397 U3snoRNP10: U3 small 32.6 2E+02 0.0044 30.5 8.6 73 2513-2588 3-76 (121)
327 KOG3723 PH domain protein Melt 32.4 9.8E+02 0.021 31.7 15.2 225 2137-2376 18-264 (851)
328 PF14664 RICTOR_N: Rapamycin-i 32.1 1.2E+03 0.027 30.1 26.9 223 1378-1606 25-270 (371)
329 KOG3915 Transcription regulato 32.0 11 0.00024 46.6 -1.1 18 842-859 561-578 (641)
330 PF14222 MOR2-PAG1_N: Cell mor 31.8 1.5E+03 0.033 31.0 29.4 438 1479-1952 13-549 (552)
331 KOG2199 Signal transducing ada 31.6 4.7E+02 0.01 33.1 12.0 70 1378-1448 45-117 (462)
332 cd06561 AlkD_like A new struct 31.1 8.7E+02 0.019 28.0 16.4 91 1348-1451 82-172 (197)
333 KOG1789 Endocytosis protein RM 28.7 2E+03 0.043 31.4 18.7 145 2288-2434 1741-1902(2235)
334 PF12612 TFCD_C: Tubulin foldi 28.1 4E+02 0.0087 31.0 10.8 32 2269-2301 5-36 (193)
335 PF11919 DUF3437: Domain of un 28.0 74 0.0016 31.8 3.9 55 1393-1448 3-57 (90)
336 PF07539 DRIM: Down-regulated 28.0 1.1E+02 0.0024 33.5 5.6 42 1133-1174 20-61 (141)
337 PF09324 DUF1981: Domain of un 27.9 2.7E+02 0.0059 27.6 7.9 68 2111-2178 16-84 (86)
338 cd03565 VHS_Tom1 VHS domain fa 27.0 8.7E+02 0.019 26.7 13.1 81 2106-2186 32-119 (141)
339 COG5537 IRR1 Cohesin [Cell div 26.5 1.8E+03 0.038 30.1 21.1 259 1689-1994 203-465 (740)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 26.0 5.9E+02 0.013 26.7 10.7 73 2107-2179 32-112 (115)
341 PF09759 Atx10homo_assoc: Spin 25.8 2.5E+02 0.0054 28.9 7.2 67 1475-1544 3-73 (102)
342 KOG3036 Protein involved in ce 24.3 1E+03 0.022 28.5 12.4 159 1379-1549 125-292 (293)
343 COG5369 Uncharacterized conser 24.0 1.4E+02 0.003 38.8 6.1 130 1397-1528 407-545 (743)
344 PF12726 SEN1_N: SEN1 N termin 24.0 2.3E+03 0.05 30.6 36.6 111 2069-2183 436-554 (727)
345 PF03130 HEAT_PBS: PBS lyase H 23.8 45 0.00098 24.9 1.2 14 1515-1528 1-14 (27)
346 PF14228 MOR2-PAG1_mid: Cell m 23.7 2.7E+03 0.059 31.3 26.9 68 2430-2500 504-571 (1120)
347 smart00185 ARM Armadillo/beta- 23.2 1E+02 0.0022 25.0 3.5 28 2517-2544 13-40 (41)
348 KOG3067 Translin family protei 22.8 1.4E+02 0.0031 33.2 5.1 35 842-876 11-45 (226)
349 PF05997 Nop52: Nucleolar prot 22.8 1.3E+03 0.029 27.3 16.5 67 12-79 4-72 (217)
350 PF10350 DUF2428: Putative dea 22.7 1.1E+03 0.023 28.9 13.5 160 1589-1748 60-251 (255)
351 PF12397 U3snoRNP10: U3 small 22.5 4.2E+02 0.009 28.1 8.8 87 324-420 3-92 (121)
352 PF14676 FANCI_S2: FANCI solen 22.3 4.1E+02 0.009 29.8 8.9 104 208-312 51-156 (158)
353 PF12783 Sec7_N: Guanine nucle 21.0 1.1E+03 0.024 26.5 12.5 96 1392-1487 35-146 (168)
354 PF11935 DUF3453: Domain of un 20.7 1.5E+03 0.033 27.3 17.7 135 2474-2612 45-222 (239)
355 PF12612 TFCD_C: Tubulin foldi 20.3 8.7E+02 0.019 28.2 11.6 109 2072-2183 5-117 (193)
356 PF04510 DUF577: Family of unk 20.2 5.8E+02 0.013 28.8 9.2 90 1657-1750 3-97 (174)
357 PF12783 Sec7_N: Guanine nucle 20.2 4.2E+02 0.009 30.0 8.8 102 259-363 34-148 (168)
358 PF08146 BP28CT: BP28CT (NUC21 20.1 5.6E+02 0.012 28.6 9.4 37 1712-1748 83-119 (153)
359 COG2854 Ttg2D ABC-type transpo 20.1 5.2E+02 0.011 30.0 9.0 96 256-359 3-102 (202)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-54 Score=530.78 Aligned_cols=557 Identities=50% Similarity=0.759 Sum_probs=521.4
Q ss_pred hhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHH
Q 000049 1205 ADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT 1284 (2629)
Q Consensus 1205 ~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~ 1284 (2629)
...+...+...++.|++..| .|+...||..|++|+...+..||.+.+..++|.|++.+++. .++.+|++.++++
T Consensus 7 ~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~~v~~ 80 (569)
T KOG1242|consen 7 KKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNVVVLE 80 (569)
T ss_pred HHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhhHHHH
Confidence 33333344444577887766 99999999999999999999999999999999999999873 2788999999999
Q ss_pred HHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1285 GALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364 (2629)
Q Consensus 1285 ~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~ 1364 (2629)
|.+++|+...|++...+++.+++.+.+|++.||++++.|++++...........+..++..+.+..+...|++|++++++
T Consensus 81 ~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag 160 (569)
T KOG1242|consen 81 GTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAG 160 (569)
T ss_pred HHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999998877666655555555555557788999999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
++++.|...+...+++..+.+.+.++++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|..+.
T Consensus 161 ~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 161 LVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAA 240 (569)
T ss_pred HHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHH
Confidence 99999999998889999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
+.++..+++++++.++|.++..+.+..||++.++++++|.|++++|++++.++++++|.+.+.+.|++++||+++.+||.
T Consensus 241 kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 241 KAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred HHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1525 ~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
.+++.+.|++|+.++|.|++++.||+.++.+|++.++.++|++++++++++.++|++.+++.+++..+++.++.+++|||
T Consensus 321 ~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 321 KFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
..+.+++++.||++.++|.+...+.|+.|++|..+++++|.+.+.+|+..+++.+|++.+.+.++.....|.++++.+++
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSE 480 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHH
Confidence 99989999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHhhChhHHHhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHH
Q 000049 1685 VLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2629)
Q Consensus 1685 i~~~~g~~~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2629)
++..+|.+....++|.+....... ++.+|++.+.++..++..+|..|.+|+.++++.+++.+.|.++.+|..+.++..
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~ 560 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGE 560 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhh
Confidence 999999999999999999887664 677999999999999999999999999999999999999999999999988876
Q ss_pred HHHHH
Q 000049 1763 VLVEH 1767 (2629)
Q Consensus 1763 ~iv~~ 1767 (2629)
.++.+
T Consensus 561 ~~~~~ 565 (569)
T KOG1242|consen 561 VEVLN 565 (569)
T ss_pred hhhcc
Confidence 65544
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.8e-46 Score=463.25 Aligned_cols=1006 Identities=17% Similarity=0.198 Sum_probs=724.2
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH----HHHHHHHhc--ccc-ccC
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQT--TFV-NTV 1569 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r----~al~~L~~~--~~~-~~~ 1569 (2629)
.++++..++++|.|.+++|+..|++|++.+++.+++..++.++..|+..+-...+..| -++.+.+.. .++ ...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 4678899999999999999999999999999999988899999999988766656555 244444331 111 233
Q ss_pred ChhhhhhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1570 DAPSLALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d--~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
.+.....+.|.+..++.. ....++-.++++++.+...+|+ -+.++...++..+...+..+...||+.|..+||.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 445566777777777643 3456888999999988887765 455677778888888888899999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhh---cCCChhhHHHHHHHHH
Q 000049 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l---~~~~~~vR~~a~~~l~ 1721 (2629)
...+.+.+..++..|++.|.+.......+..+++++.++++.|.. +.+.++|.+.+.+ +..+.++|+.++++++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999987766656667889999999999976 4578899999888 5678999999999999
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhcCCCCh----------------------------------hHHHHHHHHHHHHHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENE----------------------------------SVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~----------------------------------~VR~~al~al~~iv~~ 1767 (2629)
.+...++.+..||.+.++..++++++.+.. .||.+|.+++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873211 1455555555444432
Q ss_pred hhh---chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcc---cHHHHHHHHHHHhchhh
Q 000049 1768 YAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA---STEAHGRAIIEVLGRDK 1841 (2629)
Q Consensus 1768 ~~~---~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~---~~~~~~~~l~~~Lg~e~ 1841 (2629)
-.+ .....+-|.+....++-...++...+...-.++.+.+.... ...|+|.. +.......+.+ .
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~-----~~~d~d~~e~~g~~s~~~~L~~-----~ 432 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIE-----VLADNDAMEQGGTPSDLSMLSD-----Q 432 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc-----cccCchhhhccCCccchHHHHh-----h
Confidence 111 11112333344444444444444444444444444322211 00110100 00000001111 1
Q ss_pred HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhccc
Q 000049 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER 1919 (2629)
Q Consensus 1842 ~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~--~~~R~~A~~~L~~lv~~~~~~ 1919 (2629)
...++.++-..+.+.+...|..++..+..++...|..+.++++.++|.++..++|.+ ...+..+...+.......++.
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 123444444444566666899999999999999999999999999999999999654 467777777776666555543
Q ss_pred ----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch------hhHHHhHHHHHHHHHHHh--cCCcHHHHHHHHH
Q 000049 1920 ----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGL 1987 (2629)
Q Consensus 1920 ----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~ 1987 (2629)
..+.+.|++.....++-+.+-..+.....+++....+ -...+|..+++....+.+ +|.|.+||+.|+.
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIs 592 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAIS 592 (1233)
T ss_pred hcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4677788888889999988887777666666554432 345778888888888766 4789999999999
Q ss_pred HHHHHHHHhChhh---hhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHH-H
Q 000049 1988 AFSTLFKSAGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE-V 2063 (2629)
Q Consensus 1988 al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~-~ 2063 (2629)
++|++...+|... ...++|.+++.|+++.++-.|. +|+.-|+. .
T Consensus 593 cmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Av--------------------------------kAlt~Ia~S~ 640 (1233)
T KOG1824|consen 593 CMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAV--------------------------------KALTLIAMSP 640 (1233)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHH--------------------------------HHHHHHHhcc
Confidence 9999999888532 3445667777777665543333 34433332 1
Q ss_pred hCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 2064 AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2064 ~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l 2139 (2629)
..-++.+.+..+++.+.+++.......|.....++..++.+++. ..+..++.++...+.+.+.++-+.|..++..+
T Consensus 641 l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 641 LDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 23346678889999999999888888999999999999887753 34777888888888888899999999999999
Q ss_pred HHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc---ccccchHHHHHHHHhhhhhhhhhhhcCCcc
Q 000049 2140 YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK---EVQPSYIKVIRDAISTSRDKERRKKKGGPI 2216 (2629)
Q Consensus 2140 ~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~---~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 2216 (2629)
+...+..+......++..++.++..+- +...|..++-.++...-. ..++ +.. +...+...
T Consensus 721 ~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~-y~~-l~s~lt~P------------- 783 (1233)
T KOG1824|consen 721 AIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD-YIS-LLSLLTAP------------- 783 (1233)
T ss_pred HhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc-HHH-HHHHHcCC-------------
Confidence 888777777778888999999887653 333344433333322111 1111 111 11111100
Q ss_pred cccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHH
Q 000049 2217 LIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILS 2294 (2629)
Q Consensus 2217 ~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-~~~~~~~vk~~al~ 2294 (2629)
+.+. ...+ ........+.|.+.++..++ +.-++. +..|+.-+ ..+.+..+|..++.
T Consensus 784 -V~~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~----a~kl~~~~~s~~s~~~ikvfa~L 841 (1233)
T KOG1824|consen 784 -VYEQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSL----ATKLIQDLQSPKSSDSIKVFALL 841 (1233)
T ss_pred -cccc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhH----HHHHHHHHhCCCCchhHHHHHHh
Confidence 0000 0001 11223345777777777776 323333 33333333 34457889999999
Q ss_pred HHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 000049 2295 TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALK 2374 (2629)
Q Consensus 2295 ~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~ 2374 (2629)
+||++++..+.. ..+.+..+++++++.++++|+.+|+.|||.+.. ++++.|+|+++..+.. ++.-++..+++|+
T Consensus 842 slGElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlk 915 (1233)
T KOG1824|consen 842 SLGELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLK 915 (1233)
T ss_pred hhhhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHH
Confidence 999999876653 335566799999999999999999999999866 7889999999999865 5778899999999
Q ss_pred HHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHH----------------------
Q 000049 2375 GVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQ---------------------- 2432 (2629)
Q Consensus 2375 ~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~---------------------- 2432 (2629)
+++.........++++.||.+|++.+...++++|+.+|+|||.|+.+-|+ .+-+-++
T Consensus 916 evi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-sLlpkL~~~~~S~a~~~rs~vvsavKfsi 994 (1233)
T KOG1824|consen 916 EVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-SLLPKLKLLLRSEASNTRSSVVSAVKFSI 994 (1233)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-HHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence 99998777666799999999999999999999999999999999987774 2222222
Q ss_pred ----------------HHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH------------------
Q 000049 2433 ----------------ELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------ 2478 (2629)
Q Consensus 2433 ----------------~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~------------------ 2478 (2629)
.++..+.+++..+|+-+..+++.+..+-|.-+ .++.+++++.+.
T Consensus 995 sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPF 1072 (1233)
T KOG1824|consen 995 SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPF 1072 (1233)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCc
Confidence 22333345566666666667777776666544 245566666655
Q ss_pred hhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHH
Q 000049 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALF 2558 (2629)
Q Consensus 2479 ~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l 2558 (2629)
+|..|++..+|++|.+||..++..|..+ .++.+|+..+..|+.|+ .|+|.+++.++..+|..+|..|.+.+|.+
T Consensus 1073 KH~VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l 1146 (1233)
T KOG1824|consen 1073 KHTVDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRL 1146 (1233)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 5567888899999999999999998765 46899999999999886 89999999999999999999999999999
Q ss_pred HHHHHhhhc------------CCcchhhhhHHHHHHHHhccccCchhHHHHHHHh
Q 000049 2559 GPALAECLK------------DGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2559 ~p~l~~~~~------------~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l 2601 (2629)
+.+|.+.+. +++...|++|.||+.+++++++-+.++ .+.+|.
T Consensus 1147 ~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~~np-~~~df~ 1200 (1233)
T KOG1824|consen 1147 VEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVEKNP-QFSDFE 1200 (1233)
T ss_pred HHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccccCh-HHHHHH
Confidence 999998752 244556888889999999998877665 445554
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-44 Score=465.87 Aligned_cols=905 Identities=17% Similarity=0.192 Sum_probs=638.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~~ 1128 (2629)
..+.+|+++++|||+.+|++|+++|++.+... + .......+..+..+++.|++|. ++|...+.++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46899999999999999999999999988542 1 2223334566777788777753 5799988888
Q ss_pred CCCh-HhHHHhhcC-CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000049 1129 GTDY-SGLFKALSH-SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~-~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~ 1205 (2629)
++++ ..||..+.+ +.+.||++.|+++|+++. ..|+.|+++++.++++.. + .+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----S------~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----S------PNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----C------CCcchhHHHHHHHHhhh
Confidence 8888 778876555 688999999999999976 456789999999998842 1 22379999999999999
Q ss_pred hhcCCCChh---HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC--cc---chhhhHHHHHHHhcc--cCCChhhhhh
Q 000049 1206 DVLRTKDLP---VIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNK--KASDEEKYDL 1275 (2629)
Q Consensus 1206 ~~~~~~~~~---~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g--~~---~~~~Ll~~~~~~l~~--~~~~~~~~~~ 1275 (2629)
..+++...+ .+...| .++++|++..||..+++|..+++.... +. .+..++|.+-..+.. +..++...+.
T Consensus 147 ~~~~~~~~~~~~~l~~lf-~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLF-SQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhccccchhHHHHHHHH-HHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 999987765 344433 689999988899999999999998875 22 244666633333322 1121112233
Q ss_pred HHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhcc---c----hHHHHHHHHHHh
Q 000049 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQD---E----APTLVSRLLDQL 1346 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~---~----~~~ll~~ll~~L 1346 (2629)
+-+...++.....+.+ .+.+..|+...++..++. ++.+|..+.+++..+...... . ...+++.++..+
T Consensus 226 ~l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 226 ALEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 3333333333333333 456778888887777765 578999999988777765211 1 234555555555
Q ss_pred hcCC--------------C-HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1347 MKSD--------------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1347 ~~~~--------------~-~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
++.. + ....+.|.++|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|++
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH
Confidence 4311 1 2356789999999999999988854 7999999999998 89999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhhccC-ChhhhHHHHHHHHHHH
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la 1486 (2629)
+.+.+.+.++++.++.++.|++|.||.+|+.+++++...+.++. ...++|.++..+++. +.++..+|+.++..+.
T Consensus 381 ~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 381 DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888763 356677788888774 5688888888887777
Q ss_pred hh-CchhhhhhccchHH-HHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHH
Q 000049 1487 YC-APQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2629)
Q Consensus 1487 ~~-~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~ 1561 (2629)
+. .+..+.+||+.++. .+..+++...+.||+.+..+|+.++...++ ||++.++|.|.+.+...+..
T Consensus 461 E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~--------- 531 (1075)
T KOG2171|consen 461 EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK--------- 531 (1075)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch---------
Confidence 64 55678999999999 555556677899999999999999988775 67888899888887655421
Q ss_pred hccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHH---hcCCCHHHHHH
Q 000049 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSV 1638 (2629)
Q Consensus 1562 ~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~VR~~ 1638 (2629)
.....|.+..++++.++..+|. +.|.|+...++..+... ..+.+...|..
T Consensus 532 --------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 532 --------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred --------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 0125677778888888888765 67889999999988887 44456678899
Q ss_pred HHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1639 AARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1639 A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
.+.+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|-+.. ++=..=.-.+...--.-|+.
T Consensus 585 ~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~ 661 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKET 661 (1075)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHH
Confidence 999999999999987 567788888877665432210000 000000000000000 00000000011123345789
Q ss_pred HHHHHHHhhhhhccchHhhHHhHHHHHHh-hcCCCChhHHHHHHHHHHHHHHHhhh----------chhhhHHHHHhhcc
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLADENESVRDAALGAGHVLVEHYAT----------TSLPLLLPAVEDGI 1784 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~d~~~~VR~~al~al~~iv~~~~~----------~~i~~llp~l~~~l 1784 (2629)
++.+++.++...+..|.||++++++..+. ..-+.++.||.+|..++..++...-. ..+..+.|.+...+
T Consensus 662 A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l 741 (1075)
T KOG2171|consen 662 ACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKAL 741 (1075)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984443 44477889999999999988765422 12344667777777
Q ss_pred CCCchH-HHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc-HHHHHHHHHHHhc-------hhhHHHHHHHHHhhccC
Q 000049 1785 FNDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVLG-------RDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1785 ~d~~~~-vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~-~~~~~~~l~~~Lg-------~e~~~~vl~~L~~~~~D 1855 (2629)
.++... +-.+.++.++..+...+... ..++.... .......+..... .+.-.+....-.....+
T Consensus 742 ~~E~e~~vl~~vl~~f~~~i~~~G~~~-------L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e 814 (1075)
T KOG2171|consen 742 EEEPETEVLSEILESFAECIEVMGDNC-------LNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDE 814 (1075)
T ss_pred hcCCcHHHHHHHHHHHHHHHHhcCccc-------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhh
Confidence 666554 55556666666665543221 00100000 0000000000000 00000000000000113
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhc
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGL 1932 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L 1932 (2629)
.+...-..+.+++..++...+..+.+.+..+.|.+++.+.+.....|.+|..++++++..+|+. +.+.++|.+...+
T Consensus 815 ~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~ 894 (1075)
T KOG2171|consen 815 QDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEAL 894 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHc
Confidence 3445667778888899998899999999999999999999877766999999999999999876 5678999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHHHHHhChh-hhhhhH
Q 000049 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL------EVRESAGLAFSTLFKSAGMQ-AIDEIV 2005 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~------~VR~~A~~al~~l~~~~g~~-~~~~il 2005 (2629)
.|++|+||+++.+++|.+. .+++..+.+.+...+|.+...+..++. ..+++|+.|++.++.+.... .+++++
T Consensus 895 ~d~~pEVRqaAsYGiGvla-q~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl 973 (1075)
T KOG2171|consen 895 QDSDPEVRQAAAYGMGVLA-QFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVL 973 (1075)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH
Confidence 9999999999999999664 455666777788888888887766543 36777888999888765532 278999
Q ss_pred HHHHHhccCc---CchhHHHHHHHHHHhh
Q 000049 2006 PTLLHALEDD---QTSDTALDGLKQILSV 2031 (2629)
Q Consensus 2006 p~Ll~~L~~~---~~~~~aL~~L~~il~~ 2031 (2629)
|.|+..|-.. +......+-+..++..
T Consensus 974 ~~~l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 974 PAWLSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHHHHhCCCccchhhhhhHHHHHHHHHHh
Confidence 9999998432 2333445555555543
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-41 Score=435.34 Aligned_cols=866 Identities=18% Similarity=0.223 Sum_probs=617.5
Q ss_pred ChHhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000049 1131 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2629)
Q Consensus 1131 ~~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~--- 1207 (2629)
.+..|+..|.++|+.+|+.|.+++......-+ ++..|... ... ..+-++|+.+++-++.++..
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i-~~~--------~~~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHI-LAT--------SADPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHH-Hhc--------CCChHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999975543333 22333322 111 12227999999999998753
Q ss_pred -cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Q 000049 1208 -LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 1286 (2629)
Q Consensus 1208 -~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~ 1286 (2629)
+..+...++..-++...+.++.+.||.+..+++.++.+....+.|+++++.+.++.++++ ...||+++.++..
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s 144 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSS 144 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHh
Confidence 233333456666655667899999999999999999998877799999999888887643 4589999999999
Q ss_pred HHhhhccC-CCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc------chHHHHHHHHHHhhcC---CCHHHHH
Q 000049 1287 LAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERR 1356 (2629)
Q Consensus 1287 La~~l~~~-~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~------~~~~ll~~ll~~L~~~---~~~~~R~ 1356 (2629)
+...++.. .+++..+...+.+++.|++..||..+++++..++..... ....++|.++..+.+. ++...-.
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 99888665 468899999999999999988999999999988877641 2356788887777543 2333445
Q ss_pred HHHHHHHHHHhhhCcchhhh--hcHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHcC
Q 000049 1357 GAAFGLAGVVKGFGISSLKK--YGIAATLREGLADR-NSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFS 1430 (2629)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~~-~~~~~R~~Al~al~~La~~~~---~~~~~~v~~ilp~ll~~l~ 1430 (2629)
.+..+|..++...+. .+.+ ..++.+..+.+.++ .+...|+.|+..+.++++..+ +...+|...+++.++..+.
T Consensus 225 ~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 225 SALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 566666666654332 2221 15666666666554 378899999999999999855 5566788899999998875
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1431 DQV----------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1431 D~~----------------~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
|.. ..-...|..++..++..+++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 421 12345678899999999987754 6777777788999999999999999999999999999
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2629)
...+++|++.+++.++|+||+||.+|+.|+|++...+. |+++. .+
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~ 428 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KH 428 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HH
Confidence 99999999999999999999999999999999998776 33211 11
Q ss_pred hhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1574 LALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
...+.|.|...+.+. +.++..+|+.++-++.... ..+.+.||++.+|. .+..+++.+.+.||+.+..+||+++.+.+
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 222333444444443 4688888888888887753 33578999999999 66666778899999999999999999999
Q ss_pred CC---CchhhHHHHHHHhccCCC---hHHHHHHHHHHHHHHHhhChhHHH----hHhHHHHHh---hcCCChhhHHHHHH
Q 000049 1652 EE---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFE----HILPDIIRN---CSHQRASVRDGYLT 1718 (2629)
Q Consensus 1652 ~~---~~~~ll~~Ll~~L~~~~~---~~~R~~a~~~L~~i~~~~g~~~l~----~llp~l~~~---l~~~~~~vR~~a~~ 1718 (2629)
+. |++.+||.|...+.+... ...|-....+++.+..++|++.|. +++..+... ..+.+...|...+.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 76 789999999999986542 234556788999999999998764 444444444 33457788999999
Q ss_pred HHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~l 1798 (2629)
.++.+|+.+|++|.||++.++|+++....-..+..- .... ..++.-+++.|....
T Consensus 588 ~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-------------~d~~-------d~e~~~~~~~~e~~~----- 642 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-------------SDEE-------DEEEEQDLDGWEVVE----- 642 (1075)
T ss_pred HHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-------------cCch-------hhhhccccccchhhc-----
Confidence 999999999999999999999999987653221100 0000 000000111221100
Q ss_pred HHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh
Q 000049 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2629)
Q Consensus 1799 l~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2629)
..+.+. .| ..-....-+..|+..++.++......
T Consensus 643 -------------------~~~~e~-------------~~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~ 676 (1075)
T KOG2171|consen 643 -------------------LGDKEN-------------IG--------------IRTSVLDEKETACEALGEYAKELKEA 676 (1075)
T ss_pred -------------------cCCcee-------------ee--------------eeehhHHHHHHHHHHHHHHHHhhhhh
Confidence 000000 00 01111234678899999999999999
Q ss_pred HhhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhc------cc----hhhhHHHHHhhhcC-CCChhHHHHHHHH
Q 000049 1879 LKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG------ER----VLPSIIPILSRGLK-DPSASRRQGVCIG 1946 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L-~~~~~~~R~~A~~~L~~lv~~~~------~~----~l~~llp~L~~~L~-d~~~~vR~~a~~a 1946 (2629)
|.+|+...++..+..+ -..+..+|.+|+.++..+++..- +. .+..+.|.+...+. .+++++......+
T Consensus 677 F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~ 756 (1075)
T KOG2171|consen 677 FAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILES 756 (1075)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 9999999888433333 36788999999999998876542 21 34566666666665 4678899999999
Q ss_pred HHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHH
Q 000049 1947 LSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025 (2629)
Q Consensus 1947 L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L 2025 (2629)
+++.++.+|...+ .++...++..+...+.+...+.+..-.+... .. .+.--...+ . +.+.+.++
T Consensus 757 f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~e------ed--~d~~eee~~---~--e~d~~ll~-- 821 (1075)
T KOG2171|consen 757 FAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDE------ED--DDIEEEEDL---D--EQDAYLLD-- 821 (1075)
T ss_pred HHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hh--hhhHHHHHH---h--hhhHHHHH--
Confidence 9999988886443 3334444444333322211111111000000 00 000000000 0 00111111
Q ss_pred HHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Q 000049 2026 KQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI 2105 (2629)
Q Consensus 2026 ~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~ 2105 (2629)
.....+.+++...+.+|.|++..+.|.++..+....+.-|+.+..+++.++..+
T Consensus 822 --------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~ 875 (1075)
T KOG2171|consen 822 --------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGC 875 (1075)
T ss_pred --------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 123456777788899999999999999999998777666999999999999988
Q ss_pred cc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCC
Q 000049 2106 DE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2629)
Q Consensus 2106 ~~---~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~ 2165 (2629)
++ .+...+++.++..+.|.+|.||++|.+.+|.+++..+.+|.+.....++.|...++.+
T Consensus 876 ~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~ 938 (1075)
T KOG2171|consen 876 GEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPP 938 (1075)
T ss_pred ccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcCh
Confidence 75 4578899999999999999999999999999999999888777777777777666543
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=367.79 Aligned_cols=1068 Identities=18% Similarity=0.217 Sum_probs=716.0
Q ss_pred CCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch
Q 000049 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2629)
Q Consensus 1295 ~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2629)
+...+.++..+++.|.|.+++||..+.+|+++++.++++. ...+++.++..+.... .+.|..++.+|..++..++|..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 3445678899999999999999999999999999988775 4678888888876554 4889999999999998887621
Q ss_pred h---h---hhcHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000049 1374 L---K---KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2629)
Q Consensus 1374 l---~---~~~i~~~L~~~l~~~~-~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2629)
- . ...+.+.+.+.+.... ....+-.++..++.+...+|..+.++...++..++..++.+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 1 1 1246667777765432 3346767777777777788888888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh---cCCCHHHHHHHHHH
Q 000049 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2629)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+++ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999764 45556678999999999999999999999999999999 66688999999999
Q ss_pred HHHHhhhcCc---hhHHhHHHHHHhcc-CCCChhHH--H-H-HHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHH
Q 000049 1523 LQQVGSVIKN---PEIASLVPTLLMGL-TDPNDHTK--Y-S-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2629)
Q Consensus 1523 L~~l~~~~~~---~~i~~lvp~Ll~~l-~d~~~~~r--~-a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~ 1594 (2629)
++.|....+. |++.+++..+++.+ .||+.... + . -+.+-........+ .+ .-=+|-+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d-eY---------sDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD-EY---------SDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcc-cc---------ccccchhHHHHH
Confidence 9999987653 45577777777766 47754211 0 0 00000000000000 00 001234899999
Q ss_pred HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhccCCCh
Q 000049 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2629)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~--~L~~~~~~ 1672 (2629)
+|+.++..+.. +..+.+..++..+-|.+...+++....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 99999998876 333455667788889999999999999999999998888775542 1222210 00000000
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC--
Q 000049 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2629)
Q Consensus 1673 ~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-- 1750 (2629)
..+....+... .++..+-+.+.+..-..|.+++..+..+...+++...+|++.++|.+...+.|.+
T Consensus 424 s~~~~L~~~~~------------~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQVP------------LIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhhH------------HHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 01111111111 2222333334445555889999999999999999999999999999999999865
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
...+..++..+...+...+.+ .++.+.|.+.....|..+++-..++-..+.++..+.+...+..+ +...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 345666666666666555554 34567888888999999999999998888888766443221111 10111
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHH
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~ 1906 (2629)
+.+.+. -.+..+ ...|.+.+||+.|+.+++.++.+++..+...+|..++.+++++. ++-+|..|+
T Consensus 566 --v~~m~~---------~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMYD---------CTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHHH---------HHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 111111 111111 23788899999999999999999999899999999999999996 567899999
Q ss_pred HHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHH
Q 000049 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2629)
Q Consensus 1907 ~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2629)
+++..++...- ..++..++|.+...++......|.+...++-.++...+...-...+..++..+-..+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875431 12456777777777776667788888888888888776544444556677777778888888899
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHH
Q 000049 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA 2059 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~ 2059 (2629)
+.|...+..+...... ...+.+++.++..++++--.++++..+...+..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~a---------------------------- 762 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQA---------------------------- 762 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHH----------------------------
Confidence 8888887777654332 235678888888888887777776665544311
Q ss_pred HHHHhCCChhhhHhhhHHHHHHhcCCC-CHHHHH----HHHHHHHHHHhhccccc---HHHHHHHHHhhcCCCChhHHHH
Q 000049 2060 LAEVAGPGLNFHLGTILPALLSAMGDD-DMDVQS----LAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRRS 2131 (2629)
Q Consensus 2060 La~~~g~~l~~~l~~il~~Ll~~L~~~-~~~vr~----~a~~al~~l~~~~~~~~---~~~ll~~Ll~~l~d~~~~vR~~ 2131 (2629)
+...-.+.+. | ..++..+.....+. ...+.. +...|.+.+...+.+.. ...++..+.. ...+..+|..
T Consensus 763 lV~t~~~~l~-y-~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvf 838 (1233)
T KOG1824|consen 763 LVITKEPDLD-Y-ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVF 838 (1233)
T ss_pred HHhcCCCCcc-H-HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHH
Confidence 0000000110 0 00111111111000 001111 22334444444444322 3333333333 2345688889
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhh
Q 000049 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKK 2211 (2629)
Q Consensus 2132 a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~ 2211 (2629)
|.-.+|.+..+.+.... +++-..++..|+.++++|+.+|..|||++....-..+ ++.+.+.+
T Consensus 839 a~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y----Lpfil~qi----------- 900 (1233)
T KOG1824|consen 839 ALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY----LPFILEQI----------- 900 (1233)
T ss_pred HHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH----HHHHHHHH-----------
Confidence 99999999876543333 3344477889999999999999999999865332222 33332222
Q ss_pred cCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHH
Q 000049 2212 KGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 2291 (2629)
Q Consensus 2212 ~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~ 2291 (2629)
.+. +.-+.--...+-+++...+...
T Consensus 901 ---------------------------~sq-pk~QyLLLhSlkevi~~~svd~--------------------------- 925 (1233)
T KOG1824|consen 901 ---------------------------ESQ-PKRQYLLLHSLKEVIVSASVDG--------------------------- 925 (1233)
T ss_pred ---------------------------hcc-hHhHHHHHHHHHHHHHHhccch---------------------------
Confidence 111 1111222333344443333223
Q ss_pred HHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 000049 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILT 2371 (2629)
Q Consensus 2292 al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~ 2371 (2629)
++|+++.+|..+.+......+..|+..+.|||.++...| +.++|.|-..+.++.+..|..++.
T Consensus 926 ---------------~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~vvs 988 (1233)
T KOG1824|consen 926 ---------------LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSSVVS 988 (1233)
T ss_pred ---------------hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhhhhh
Confidence 345555566666666666667789999999999987665 678999988888888999999999
Q ss_pred HHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC------------
Q 000049 2372 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS------------ 2439 (2629)
Q Consensus 2372 AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~------------ 2439 (2629)
|++..+..-...+ .++..+.+.-....++|+|..||+.|...+...+++-|. -+..++++++.++.
T Consensus 989 avKfsisd~p~~i-d~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps-lIrDllpeLLp~Ly~eTkvrkelIre 1066 (1233)
T KOG1824|consen 989 AVKFSISDQPQPI-DPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS-LIRDLLPELLPLLYSETKVRKELIRE 1066 (1233)
T ss_pred eeeeeecCCCCcc-CHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh-HHHHHHHHHHHHHHHhhhhhHhhhhh
Confidence 9998887766666 455555555555788999999999999999999999884 66667777665543
Q ss_pred ----------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCC
Q 000049 2440 ----------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509 (2629)
Q Consensus 2440 ----------~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2629)
++..+.|..++.+++.++..+-+.+. .-.+...+..++.|. -+++.-...-+.++...|...
T Consensus 1067 VeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~d----it~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~--- 1138 (1233)
T KOG1824|consen 1067 VEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLD----ITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSA--- 1138 (1233)
T ss_pred hcccCccccccchHHHHHHHHHHHHHHHHhhhhhcc----HHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHH---
Confidence 23445667777777777765544431 224555566666655 567766666666655554321
Q ss_pred CchhhHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHHHh
Q 000049 2510 NTTVVVDILASVVSAL------------HDDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2510 ~~~~l~~~l~~l~~~l------------~~~~~~vr~~al~~l~~~a~ 2545 (2629)
....++.++.++-..+ -+...|.+|.|++++..+-+
T Consensus 1139 VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1139 VLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred HHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 0123444555544332 13445778888888888744
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-37 Score=374.28 Aligned_cols=648 Identities=16% Similarity=0.219 Sum_probs=460.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhh-----------------ccCCc-hHHHHHHH
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA-----------------VHDPE-KSVAEAAE 1118 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~-~~~~~~a~ 1118 (2629)
+++.++|..++|||.++|+.|+++|.+.. ..+++..+..+.+++.. ..++. ++...-..
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 35678899999999999999999999875 34556655555554432 22222 22222235
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD------EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 1191 (2629)
++|-..+.+.++++ ..++.+|.++.+..+..|+++++.++. .||+.+..+..++.+ + .+.
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----------~---~~~ 144 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----------E---QAS 144 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----------c---cch
Confidence 68998888888888 778899999999999999999999854 455554444444321 1 222
Q ss_pred chhhHHHHHHHHhhhhcCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHh----hCcc-chhhhHH-HHH
Q 000049 1192 LGRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDK----HGRD-NVSLLFP-IFE 1260 (2629)
Q Consensus 1192 ~~R~~~~~~l~~l~~~~~~~~~----~~i~~~li~~~l-~d~~~~Vr~~~~~a~~~~i~~----~g~~-~~~~Ll~-~~~ 1260 (2629)
.+|++...++|++|+.+.++.. +.++..+++++. ..++..||.++.+|....++. |..+ ..+.||+ +|+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 6899999999999999988754 468888877776 567999999999997665443 4444 3467887 577
Q ss_pred HHhcccCCChhhhhhHHHHHHHHHHHHHh-hhccCCCcchh-hHHHHHhhcCCCcHHHHHHHHHhhhhhHh---------
Q 000049 1261 NYLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQ--------- 1329 (2629)
Q Consensus 1261 ~~l~~~~~~~~~~~~vr~~~v~~~~~La~-~l~~~~~~l~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~--------- 1329 (2629)
.|... +.+++.+++.++..+.. |++...+++.. ++...+.+++.++++|...+.+--+....
T Consensus 225 atq~~-------d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 225 ATQSP-------DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred cccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66643 45689899887776664 66666778865 89999999999999887655543222111
Q ss_pred --------------hhccchHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcC
Q 000049 1330 --------------SMQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389 (2629)
Q Consensus 1330 --------------~~~~~~~~ll~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~ 1389 (2629)
..+.....++|.+++.|.++ ++|+..++|+.||..+++..|++.+. ++++|+++.+++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~ 375 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQN 375 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCC
Confidence 11222357899999999874 37999999999999999999999986 899999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHH
Q 000049 1390 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSL 1463 (2629)
Q Consensus 1390 ~~~~~~R~~Al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~L 1463 (2629)
. ||+.|++|.++||++.++.. ....|++.+.+|.++..+.|+.-.||+++..+++.+++.++.... ..+++.+
T Consensus 376 p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l 454 (859)
T KOG1241|consen 376 P-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSAL 454 (859)
T ss_pred c-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHH
Confidence 8 89999999999999999876 568899999999999999999999999998888888776654322 2223333
Q ss_pred HhhhccCChhhhHHHHHHHHHHHhhCchhh---------hhhccchHHHHhhhhc--C-CCHHHHHHHHHHHHHHhhhcC
Q 000049 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
+++|. +.+|+-..+|+++..+++.+++.. .++++.|+..|++..+ | .....|.+|..||+.+.+...
T Consensus 455 ~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 455 LEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 33332 234444445555555444332211 1123333333333332 1 234455555555555554433
Q ss_pred chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH----hhc-------CC--CHHHHHHHHH
Q 000049 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR----GLR-------ER--SAETKKKAAQ 1598 (2629)
Q Consensus 1532 ~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~----~L~-------d~--~~~vr~~a~~ 1598 (2629)
+.. .+....+.+.+.. .++ |+ -.+++...|.
T Consensus 534 ~~v------------------------------------y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 534 DDV------------------------------------YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 211 1112222222211 111 11 1255666777
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHH
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
.++.+.+.++. ++.++.+.+|..+...++. .+..|.+.|+-++++++..+|+. |++.+.|+|...|++..+..+
T Consensus 578 ~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGS--DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccc--cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 78888777655 7889999999999999997 56678999999999999999986 688999999999987765655
Q ss_pred HHHHHHHHHHHHHhhChhH---HHhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcC--
Q 000049 1675 RSGAAQGLSEVLAALGTVY---FEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-- 1747 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~---l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~-- 1747 (2629)
-..+..-++.+++.++.+. .+.++..+++.++++ +..+|...+++|+.++..+|.+|.||++.+++.+.+.-+
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 4444455789999999884 378999999999886 678999999999999999999999999999998877642
Q ss_pred -CC--C------hhHHHHHHHHHHHHHHHhh
Q 000049 1748 -DE--N------ESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1748 -d~--~------~~VR~~al~al~~iv~~~~ 1769 (2629)
|. + +.+|++++++...++..+.
T Consensus 736 ~d~~~~~~~dYvd~LRe~~leay~gi~qglk 766 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEAYTGIIQGLK 766 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 1 2356666666666655443
No 7
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=1.6e-35 Score=373.81 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.8
Q ss_pred HHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHhhccch
Q 000049 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2629)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2629)
||||+.+++||..++. . .+|.+|+++++|+++||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 000049 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2629)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2629)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 84 99999999999999 55678888999999999999999999765 45555555521111 11 2222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhcc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000049 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2629)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2629)
..+|.++.++||+| +++|+|+| .+++|.+|.+++++.++..+..+..+.. ..+|+++|||++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 55999999 6688888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHHhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000049 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2629)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2629)
.+++++.++|+ +...++.++++|+....... ..++.+....... .....+++ ....... . .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999998 78889999999997653110 0000110111111 11222222 1111110 0 24
Q ss_pred ccchhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000049 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2629)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2629)
+.++++|++||||.|.. +++|++|| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999975 37899995 33 99999999999963
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-30 Score=306.33 Aligned_cols=685 Identities=17% Similarity=0.210 Sum_probs=490.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--------
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-------- 1691 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-------- 1691 (2629)
+-..+...+.|+++-+|......+..++...|-..+++++|.|.+.|.+.. ....-+++.++..++.....
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 445566777889999999999999999998888889999999999997654 23445777778777764322
Q ss_pred hHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000049 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2629)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~ 1771 (2629)
..++-++|.+++..+++++.+|..++.|+..+...-...+.-++.+.+..++..-.|++++||....+++..+.+...++
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 23467899999999999999999999999988887777888888999999999999999999999888877665543322
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2629)
++|.+ ..++..+..
T Consensus 250 ----l~phl--------------------------------------------------------------~~IveyML~ 263 (885)
T KOG2023|consen 250 ----LVPHL--------------------------------------------------------------DNIVEYMLQ 263 (885)
T ss_pred ----cccch--------------------------------------------------------------HHHHHHHHH
Confidence 22222 122233333
Q ss_pred hccCccHHHHHHHHHHHHHHHhc--ChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHh
Q 000049 1852 VRSDVSLSVRQAALHVWKTIVAN--TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929 (2629)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~--~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~ 1929 (2629)
...|.+.+|--.|++.|.++++. .+..+.+|++.++|.++..+.-++.+.- +.+...++
T Consensus 264 ~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~---------LL~~~eeD---------- 324 (885)
T KOG2023|consen 264 RTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII---------LLKNNEED---------- 324 (885)
T ss_pred HccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH---------HhcCcccc----------
Confidence 34677778999999999999985 3466889999999999988875443211 01100110
Q ss_pred hhcCCCChhHHHHHH----HHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhH
Q 000049 1930 RGLKDPSASRRQGVC----IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIV 2005 (2629)
Q Consensus 1930 ~~L~d~~~~vR~~a~----~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~il 2005 (2629)
....|++.++|-... .+.++... ..+...+..+ .-=...+...|...+.+++.+...+|.+..+-++
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~--~eDdddDe~D-------DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDAD--DEDDDDDEDD-------DDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccc--cccccccccc-------cccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 001111222211100 00000000 0000000000 1112346778888888888888888877666666
Q ss_pred HHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC
Q 000049 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085 (2629)
Q Consensus 2006 p~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~ 2085 (2629)
|.|-+.|.+++- .++....-|+|++|+.+-..+.||++.++|.+++.|.|
T Consensus 396 PlLk~~L~~~~W------------------------------~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 396 PLLKEHLSSEEW------------------------------KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred HHHHHHcCcchh------------------------------hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhcc
Confidence 766666655321 01112456889999988889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHH
Q 000049 2086 DDMDVQSLAKEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161 (2629)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~----~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~l 2161 (2629)
+.+-||..++|++++....+. .+++.+++..|+..+-|.+..|+.+||.++..+-+..+.++.+|+..++..|...
T Consensus 446 KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~a 525 (885)
T KOG2023|consen 446 KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFA 525 (885)
T ss_pred CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999999999999998877552 2568899999999999999999999999999999999999999999999999887
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC
Q 000049 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241 (2629)
Q Consensus 2162 l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~ 2241 (2629)
++.....-..--..|++++..+.+. .++-|.++.-++|.+++.+.--
T Consensus 526 f~kYQ~KNLlILYDAIgtlAdsvg~---------------------------------~Ln~~~YiqiLmPPLi~KW~~l 572 (885)
T KOG2023|consen 526 FGKYQKKNLLILYDAIGTLADSVGH---------------------------------ALNKPAYIQILMPPLIEKWELL 572 (885)
T ss_pred HHHHhhcceehHHHHHHHHHHHHHH---------------------------------hcCcHHHHHHhccHHHHHHHhc
Confidence 7643322222223333333322210 1123567777888888776532
Q ss_pred C--HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC---------------CCCHhHHHHHHHHHHHHHHhcC
Q 000049 2242 S--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------------RFPWQVKSAILSTLSIIIRKGG 2304 (2629)
Q Consensus 2242 ~--~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~---------------~~~~~vk~~al~~L~~L~~~~~ 2304 (2629)
+ ...---..+|++.++...+ ..|.||...+....++++.. ..+.+....+|+.++.+.+.+|
T Consensus 573 sd~DKdLfPLLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 573 SDSDKDLFPLLECLSSIASALG-VGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLG 651 (885)
T ss_pred CcccchHHHHHHHHHHHHHHHh-ccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhh
Confidence 2 2222346899999999998 78999988877666666541 1223455679999999999999
Q ss_pred CCccCchH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-----cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 000049 2305 IALKPFLP--QLQTTFIKCLQDSTRTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2629)
Q Consensus 2305 ~~l~p~lp--~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~-----~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2629)
..+.+.+. .+...+++|+.|+-++||.++...||.+... .|..+.+++.+...+......+..++.+|++++.
T Consensus 652 ~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 652 SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHH
Confidence 98888664 4889999999999999999999999999553 3566667777766665555789999999999999
Q ss_pred hhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH-hhc----CCCCchhhHhHH
Q 000049 2378 KHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLADLLQELL-NLA----SSPSWAARHGSV 2450 (2629)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll-~~~----~~~~~~~~~~~~ 2450 (2629)
-+.|.++ .+++..++.-|...++.. ...+-.+.|-.+|+|+.+.|+ .+.+.++.+. .|. .-++...+.+++
T Consensus 732 ~k~g~~~-~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe-~vAp~l~~f~~pWc~sl~~i~DneEK~sAF 809 (885)
T KOG2023|consen 732 LKMGLKM-KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPE-EVAPHLDSFMRPWCTSLRNIDDNEEKESAF 809 (885)
T ss_pred HHhchhh-hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHH-hcchhHHHHHHHHHHHhcccccchhHHHHH
Confidence 9999988 688888888887777654 456788999999999999986 4455555432 232 223444688899
Q ss_pred HHHHHHHhhCCcccc
Q 000049 2451 LVFATFLRHNPSAIS 2465 (2629)
Q Consensus 2451 ~~l~~~l~~~p~~~~ 2465 (2629)
..++.++.-+|..+.
T Consensus 810 rG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 810 RGLCNMINVNPSGVV 824 (885)
T ss_pred HHHHHheeeCchhhh
Confidence 999999999998764
No 9
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.1e-27 Score=280.46 Aligned_cols=626 Identities=14% Similarity=0.145 Sum_probs=437.0
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhH-----------------hhhhccC-CchHHHH
Q 000049 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTS-----------------LWIAVHD-PEKSVAE 1115 (2629)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~-----------------l~~~~~~-~~~~~~~ 1115 (2629)
+..++.+|.++ .+|||+++|..++.+|.+... .++..++.++.. +.++... .+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~---~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQS---GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhcc---ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34577788877 699999999999999988752 223333333322 2333333 3333344
Q ss_pred HHHHHHhhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000049 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD--EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2629)
Q Consensus 1116 ~a~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2629)
-..++|.....+.++++ .-.+.+|.++.++.-..|++.+++++. .-...|++++..+..-. +. ..|..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 45688998887887777 667899999999999999999999865 22245666555554321 11 13446
Q ss_pred hhhHHHHHHHHhhhhcCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHH---HH-HhhCc-cchhhhHH-HHHH
Q 000049 1193 GRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIM---II-DKHGR-DNVSLLFP-IFEN 1261 (2629)
Q Consensus 1193 ~R~~~~~~l~~l~~~~~~~~~----~~i~~~li~~~l-~d~~~~Vr~~~~~a~~~---~i-~~~g~-~~~~~Ll~-~~~~ 1261 (2629)
+++....++++.|+...++++ +.++..++.+++ ..+...||.++++|... ++ .++.. +..+.+|+ +|+.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 778888999999988777554 345555556776 45789999999999665 22 22333 34568887 4666
Q ss_pred HhcccCCChhhhhhHHHHHHHHHHHHHh-hhccCCCcch-hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh---------
Q 000049 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--------- 1330 (2629)
Q Consensus 1262 ~l~~~~~~~~~~~~vr~~~v~~~~~La~-~l~~~~~~l~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~--------- 1330 (2629)
|... +.+++.+++.++..+-. |++-..++++ .+...+...+++++++|...+.+--+.+...
T Consensus 230 tq~~-------d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQGN-------DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 5543 35577776544444332 4444456665 5667778899999999988776644333211
Q ss_pred -hc-----------cchHHHHHHHHHHhhcC------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCC
Q 000049 1331 -MQ-----------DEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2629)
Q Consensus 1331 -~~-----------~~~~~ll~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~ 1392 (2629)
.+ ....+++|.++..|.++ ++|+..++|+.||...++..|+..+. +++.|+.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 11 11357899999999873 47999999999999999999998886 6999999999988 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCC
Q 000049 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2629)
|+.|++|+++||++.++.. ....+++.+.+|.+...+.|+.-.|.+.+..|++.+++.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v-------------------- 439 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV-------------------- 439 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--------------------
Confidence 9999999999999998866 4577899999999999999998889888877777765432
Q ss_pred hhhhHHHHHHHHHHHhhCchhhh--hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc----------hhHHhHH
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLS--QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------PEIASLV 1539 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~--~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----------~~i~~lv 1539 (2629)
+..+. .|++..+...+..+.| +|.+..+++++...++.++.. +.+..++
T Consensus 440 ------------------a~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 440 ------------------AMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred ------------------HHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 22221 2456666777777888 888999999999998887752 2345566
Q ss_pred HHHHhccC--CCChhHH----HHHHHHHhccccccCChhhhhhHHHHHHHhhc-------------CC--CHHHHHHHHH
Q 000049 1540 PTLLMGLT--DPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-------------ER--SAETKKKAAQ 1598 (2629)
Q Consensus 1540 p~Ll~~l~--d~~~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~-------------d~--~~~vr~~a~~ 1598 (2629)
..|++... +.+...| .++.+++. ++.+...+.+..+.......+. |+ -.++...-+.
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~--~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~ 578 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLIL--ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIG 578 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 66665532 2222344 34444442 3333222333333333322221 11 1244555555
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCChHH
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~-~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
.+..+.+. .+.++.+.-+++|..+.+.+.... ..+-.....+|+.+...+|+. |.+.++|+|...+... +..+
T Consensus 579 vl~aiir~--~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~-d~~v 655 (858)
T COG5215 579 VLEAIIRT--RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT-DRFV 655 (858)
T ss_pred HHHHHHHh--cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch-hHHH
Confidence 55555553 345788888999999999998763 456678899999999988875 6789999999988433 3334
Q ss_pred HHHHHHHHHHHHHhhChhHH---HhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhc
Q 000049 1675 RSGAAQGLSEVLAALGTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~l---~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2629)
-..+..-++.+.+.+|.++. +.++..+.+.++++ +.++|...+++|+.++..+|..|.+|++.++-.+.+.-
T Consensus 656 ~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 656 LNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 44455557899999998843 67888888988875 67899999999999999999999999999888776653
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-27 Score=284.69 Aligned_cols=693 Identities=19% Similarity=0.226 Sum_probs=478.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh-----h
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-----Q 1495 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~-----~ 1495 (2629)
+-..++.+++|+++.+|......+..+++.-.-..+..++|.|.+.|++.+..+..+|..+|..+++..++.+. .
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 34467889999999999887777777766555556789999999999999999999999999999998776553 3
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
.+.-++|++++..++++|.+|..|..|+.++.-.-.++-+. .+.
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~------------------------------------~iD 214 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYV------------------------------------HID 214 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHH------------------------------------HHH
Confidence 57779999999999999999999999999886432221110 011
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 1655 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~ 1655 (2629)
..+..+...-.|.+++||+..|..+.-+... .++.+.|+++.++..+.+..+|.+.+|--.|.+.+-++++.-
T Consensus 215 ~Fle~lFalanD~~~eVRk~vC~alv~Llev--r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp----- 287 (885)
T KOG2023|consen 215 KFLEILFALANDEDPEVRKNVCRALVFLLEV--RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP----- 287 (885)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh--cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-----
Confidence 2223333444677889999999999988875 455789999999999999988888888777777766665410
Q ss_pred hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH
Q 000049 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL 1735 (2629)
Q Consensus 1656 ~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l 1735 (2629)
. +..-+.||+
T Consensus 288 ----------------i------------------------------------------------------~~~~L~p~l 297 (885)
T KOG2023|consen 288 ----------------I------------------------------------------------------CKEVLQPYL 297 (885)
T ss_pred ----------------C------------------------------------------------------cHHHHHHHH
Confidence 0 001124788
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh-hcCCCcccc
Q 000049 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK-VAGTSGKAL 1814 (2629)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~-~~~~~~k~~ 1814 (2629)
++++|.+++++...+.++- +.++-.++ .. ..|....+|- ..-.. ..|. +...
T Consensus 298 ~kliPvLl~~M~Ysd~D~~---------LL~~~eeD---~~-------vpDreeDIkP-------Rfhksk~~~~-~~~~ 350 (885)
T KOG2023|consen 298 DKLIPVLLSGMVYSDDDII---------LLKNNEED---ES-------VPDREEDIKP-------RFHKSKEHGN-GEDA 350 (885)
T ss_pred HHHHHHHHccCccccccHH---------HhcCcccc---cc-------CCchhhhccc-------hhhhchhccC-cccc
Confidence 8888888888775544421 00000000 00 0011111110 00000 0000 0000
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh
Q 000049 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2629)
Q Consensus 1815 ~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L 1894 (2629)
.+++++||+++. ...+..|..|+++..++..++...+. +.++.++|.+-+.|
T Consensus 351 ~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 351 DDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHL 402 (885)
T ss_pred cccccccccccc-------------------------ccccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHc
Confidence 011111111110 01245688999888888888776665 78899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2629)
.+.+|.+|..+.-++|.+++.+-.. .+|.++|.+.+.+.|+.+-||.-.|++|+........+.-..|+..++..++
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 9999999999999999999987544 5789999999999999999999999999887555444444567788888888
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCch
Q 000049 1972 TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 2051 (2629)
Q Consensus 1972 ~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~ 2051 (2629)
+.+-|.+.+|+++|+.+|..+-+..|. +++|++-..| +.+...++.+-...+-
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp~l~~IL----------~~l~~af~kYQ~KNLl------------- 535 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEAGE----ELVPYLEYIL----------DQLVFAFGKYQKKNLL------------- 535 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH----------HHHHHHHHHHhhccee-------------
Confidence 889999999999999999999887776 4445432222 1121112111000000
Q ss_pred hHHHHHHHHHHHhCCChh--hhHhhhHHHHHHhc---CCCCHHHHHHHHHHHHHHHhhccc-------ccHHHHHHHHH-
Q 000049 2052 FNAHALGALAEVAGPGLN--FHLGTILPALLSAM---GDDDMDVQSLAKEAAETVTLVIDE-------EGVESLVSELL- 2118 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~--~~l~~il~~Ll~~L---~~~~~~vr~~a~~al~~l~~~~~~-------~~~~~ll~~Ll- 2118 (2629)
.--.|+|.+|...|.++. .|+..++|+|++.. .+++.++= -..+|+..+..+.+. +.+...+..+.
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQK 614 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 124689999999998875 48999999999764 56655442 245677766665432 11222222222
Q ss_pred ------hhcCC-----CChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC
Q 000049 2119 ------KGVGD-----NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2119 ------~~l~d-----~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
..-.+ .+...-..++.++..+++..+....+.+ .+++..++.++.|.-++||+.+...|+.+++.+.
T Consensus 615 t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~ 694 (885)
T KOG2023|consen 615 TLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF 694 (885)
T ss_pred HHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 11111 1223334677888888887665554433 4578888999999999999999999999988764
Q ss_pred cccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh
Q 000049 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265 (2629)
Q Consensus 2186 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l 2265 (2629)
....| .+..++|++...+....-.+-.+|+.++|+++...| ...
T Consensus 695 ~~v~p-----------------------------------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g-~~~ 738 (885)
T KOG2023|consen 695 EHVIP-----------------------------------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMG-LKM 738 (885)
T ss_pred Hhccc-----------------------------------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-hhh
Confidence 32222 223345555444444455677889999999999999 788
Q ss_pred hhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhc
Q 000049 2266 KEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL 2343 (2629)
Q Consensus 2266 ~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~ 2343 (2629)
++|+..++..|+-+++.. .+..+.....-|+|.++...|..+.|++++.++....++.+- +.+-+..|...+..++..
T Consensus 739 ~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 739 KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV 818 (885)
T ss_pred hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheee
Confidence 999999999999988754 234566677778999999999999999999999888888774 677899999999999877
Q ss_pred cC
Q 000049 2344 ST 2345 (2629)
Q Consensus 2344 ~~ 2345 (2629)
.|
T Consensus 819 Np 820 (885)
T KOG2023|consen 819 NP 820 (885)
T ss_pred Cc
Confidence 65
No 11
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.1e-25 Score=294.10 Aligned_cols=596 Identities=18% Similarity=0.230 Sum_probs=439.9
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch-hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
...+...+...+.+++|..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+++|-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 345666777888899999999999999999988873 3445567888999999999999999999999999999887777
Q ss_pred hhhhhHHHHHHhccCcC---------------------chhHHHHHHHHHHhhhccCcCcccchhhhcCC-------Cch
Q 000049 2000 AIDEIVPTLLHALEDDQ---------------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2629)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~---------------------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~-------~~~ 2051 (2629)
....++..|++.|..+. .+++.+..++++|+..++..-|.+++++++-. ..-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 77888889988873221 12567899999999999999999999998632 112
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---cccccHHHHHHHHHhhcCCCChhH
Q 000049 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~---~~~~~~~~ll~~Ll~~l~d~~~~v 2128 (2629)
.++..++.|++-+|..+.||+++++|.|+++--|++..|+.++...|+.++.. +.++++++++.+|+.++.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 46788999999999999999999999999999999999999999999999864 235789999999999999999999
Q ss_pred HHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhh
Q 000049 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2629)
Q Consensus 2129 R~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~ 2207 (2629)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||++|-.+...+.+-+-+. ...++
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~------------~d~~~--- 1120 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI------------CDVTN--- 1120 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cccCC---
Confidence 9999999999998765 4578899999999999999999999999887766665432110 00000
Q ss_pred hhhhcCCcccccCCCCcccchhhHHHHH-HHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000049 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2629)
Q Consensus 2208 ~~~~~~~~~~l~g~~l~k~l~~ilp~ll-~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2629)
|-.-.+.+..++|.++ +|+++..+++|..++.++.++++..| ..++||.+.+++-|++..+.-++.
T Consensus 1121 ------------~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1121 ------------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ------------cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 0000134566888876 77888889999999999999999998 799999999999999998875333
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHhcc--CChhHHHHHHHHhh
Q 000049 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL------GKLSALS--TRVDPLVGDLLSSL 2358 (2629)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aL------g~l~~~~--~~~~~ll~~Ll~~l 2358 (2629)
-.-..++...+.=.+. =++.|..+++.. +.++.+- ..+..++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea-----------------------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA-----------------------LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH-----------------------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222333321111110 123333333222 2222211 23567788888888
Q ss_pred hcC-CHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000049 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2629)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2629)
+.+ .-+.|.+..+.+..++...|.++ .||.+.++..++..+.|+++.+|+..|.+.|.|++...++...+++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 754 35667777888888888899988 7999999999999999999999999999999999999988888898888776
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCcccc---------------------------------------CChhHHHHHHHHH
Q 000049 2438 ASSPSWAARHGSVLVFATFLRHNPSAIS---------------------------------------MSPLFLSILDRLK 2478 (2629)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~---------------------------------------~~~~~~~i~~~l~ 2478 (2629)
+..++...+..+.-....+..++++.+. ..-+..+++..++
T Consensus 1324 ~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~ic 1403 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLIC 1403 (1702)
T ss_pred HhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHH
Confidence 5544433222111111112222221110 0112334444455
Q ss_pred hhhc-CCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2479 SSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2479 ~~~~-~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
.... ++.+-+|..++.++...........|. +.+......+..++++..++.+.--+.++......+.+.+....+.
T Consensus 1404 eni~nn~~w~lr~q~Akai~~~a~~~sss~~~--p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~s 1481 (1702)
T KOG0915|consen 1404 ENITNNESWKLRKQAAKAIRVIAEGLSSSAPI--PVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSS 1481 (1702)
T ss_pred HHhccchHHHHHHHHHHHHHHHcccccccCCh--HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchH
Confidence 4444 445778888888887765443333221 4667778888889999999999999999987777666666555556
Q ss_pred HHHHHHhhhcCCc
Q 000049 2558 FGPALAECLKDGS 2570 (2629)
Q Consensus 2558 l~p~l~~~~~~~~ 2570 (2629)
+.-..+.+..+..
T Consensus 1482 i~~A~~~e~sr~~ 1494 (1702)
T KOG0915|consen 1482 IEHAVMEEVSRRE 1494 (1702)
T ss_pred HHHHHHHHHHHHH
Confidence 6566666554433
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=3.3e-21 Score=270.86 Aligned_cols=1305 Identities=16% Similarity=0.155 Sum_probs=730.8
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-------HHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000049 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2629)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 1203 (2629)
++.|+..|.+.+...|..++.++..+..... +. -.+.+..|+...... + ..+ --.+..+..+|..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--s----k~d-~~L~~~Av~AL~n 173 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--N----KQD-KVVEGLLTGALRN 173 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--c----hhh-HHHHHHHHHHHHH
Confidence 4678889998899999999999998864321 11 022334444432210 0 001 1234455677777
Q ss_pred hhhhcCCCC---h-hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc--cc-h-hhhHHHHHHHhcccCCChhhhhh
Q 000049 1204 AADVLRTKD---L-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN-V-SLLFPIFENYLNKKASDEEKYDL 1275 (2629)
Q Consensus 1204 l~~~~~~~~---~-~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~--~~-~-~~Ll~~~~~~l~~~~~~~~~~~~ 1275 (2629)
++..-++-. . ...++.++ ..+.++++.++..+..+.......++. +. + ...+|.|-+++... ....
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-----~~~~ 247 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-----NEVS 247 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----CChH
Confidence 775432211 0 01223332 444677888888887765444433221 11 1 24567777777541 1235
Q ss_pred HHHHHHHHHHHHHhhhccCCCcc--hhhHHHHHhhcCCCcHH---------HHHHHHHhhhhhHhhhccchHHHHHHHHH
Q 000049 1276 VREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLD 1344 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~~~~~l--~~i~~~L~~~L~~~~~~---------Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~ 1344 (2629)
+|+.++-.++.|+.+-......+ ...++.|++.+..++.+ .|+.+.-+++.+.... ..+++.+-+
T Consensus 248 VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~ 323 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGE 323 (2102)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHH
Confidence 88989888899886421111111 13467777777766543 4777777777765332 445555555
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCcc-----hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHH
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGIS-----SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYV 1418 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~-----~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v 1418 (2629)
.+....+...--.+..++..+...+... .+....+.+.|.+.+++++.....+.+..++..+. |+. +...+
T Consensus 324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~---gN~~l~~~L 400 (2102)
T PLN03200 324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY---GNAYLSRKL 400 (2102)
T ss_pred hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc---CChHHHHHH
Confidence 5433333333334555565554432211 12223456788888988744434555565554422 221 11111
Q ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh
Q 000049 1419 --IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2629)
Q Consensus 1419 --~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~--v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2629)
....+.++..+...+..++..+..++..+...-.... + ...+|.|++.|.+++...+..++..++.++...+++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 2467778888888888999999999988875432221 1 457899999999988899999999999998765543
Q ss_pred hh-hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhcccc
Q 000049 1493 LS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV 1566 (2629)
Q Consensus 1493 l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~ 1566 (2629)
.. -.-.+.+|.|.++|..++.++|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .+..++... .
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL--i 558 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL--V 558 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH--H
Confidence 21 11257899999999999999999999999999874211 1 22 2578889999988777665 566655431 1
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-ch--HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+. ..++.+...+...+..++..+.+.++++...... ++.. .. ....++.|.+++.++++.+++.|+.+|
T Consensus 559 ~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 559 RTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred hccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122 2335566677777889999999999998775332 2211 10 135789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH--HhHhHHHHHhhcCCChhhHH
Q 000049 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1644 ~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l--~~llp~l~~~l~~~~~~vR~ 1714 (2629)
..++..-.+. ...+.+|.++..+.+.. ...+..++.+|+.+......+ .+ ...+|.+++.+.+.+..+++
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e 712 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAE 712 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence 9998743321 23567888888887654 447888999999998743332 11 45789999999999999999
Q ss_pred HHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-h------hhHHHHHhhccCC
Q 000049 1715 GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFN 1786 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~-i------~~llp~l~~~l~d 1786 (2629)
.++.++..++..-... .... ...++++...+....+.+|+.|..++..++...+.+. + .-.+..+...+..
T Consensus 713 ~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 713 QAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 9999999998754321 1112 4578999999999999999999999999887665332 1 1134445555554
Q ss_pred CchHHHH--HHHHHHHHHHHhhcCC-CccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHH
Q 000049 1787 DNWRIRQ--SSVELLGDLLFKVAGT-SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1863 (2629)
Q Consensus 1787 ~~~~vR~--sa~~ll~~ll~~~~~~-~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~a 1863 (2629)
.+-+... .+++.+..+...-.+. ..+.. +..+.+.-+ -+..+..++.+.++.+.+.
T Consensus 792 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~---------------~~~~~e~p~------~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 792 TDLDSSATSEALEALALLARTKGGANFSHPP---------------WAVLAEVPS------SLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred CCcchhhHHHHHHHHHHHHhhcccCCCCCCc---------------hhhHHhccC------chHHHHHHHHcCChHHHHH
Confidence 4444333 3666666665421110 00000 011222111 1233334557778889999
Q ss_pred HHHHHHHHHhcChhhHhhhHH---HHHHHHHHH-hcCCCHHHHHH---------------HHHHHH------HHHHHh--
Q 000049 1864 ALHVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERRQV---------------AGRALG------ELVRKL-- 1916 (2629)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~---~Ll~~L~~~-L~~~~~~~R~~---------------A~~~L~------~lv~~~-- 1916 (2629)
|++++..++...|.-+..++. ..+..+..+ +++++.++|.- ...++. .++..+
T Consensus 851 ai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (2102)
T PLN03200 851 AIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVD 930 (2102)
T ss_pred HHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 999999998877755444432 222222222 23344443322 221111 111100
Q ss_pred -----cc------ch---------------------------hhhHHHHHhhhcCCCChhHH-----HHHHHHHHHHHHh
Q 000049 1917 -----GE------RV---------------------------LPSIIPILSRGLKDPSASRR-----QGVCIGLSEVMAS 1953 (2629)
Q Consensus 1917 -----~~------~~---------------------------l~~llp~L~~~L~d~~~~vR-----~~a~~aL~~li~~ 1953 (2629)
.. .+ -+.+-=+|...+.+.++.-| .++..+|.+-+..
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~ 1010 (2102)
T PLN03200 931 MLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLAS 1010 (2102)
T ss_pred HHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHh
Confidence 00 00 00011111111111111111 1122222221111
Q ss_pred hchh---hHHHhHHHHHHH-HHHH-hcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc--hhHHHHHHH
Q 000049 1954 AGKS---QLLSFMDELIPT-IRTA-LCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLK 2026 (2629)
Q Consensus 1954 ~~~~---~l~~~l~~ll~~-l~~~-L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~ 2026 (2629)
+... .+++--..-+.. +... ++|++-.--.++..+ +|.|-..|++++. +..+.+.+.
T Consensus 1011 ~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~q~~a 1074 (2102)
T PLN03200 1011 YTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRA----------------IPSLANLLKSEETIDRYFAAQALA 1074 (2102)
T ss_pred hccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHH----------------hHHHHhhhhhHHHHHHHHHHHHHH
Confidence 1100 001111111122 2222 233322111222222 2223333333221 122333333
Q ss_pred HHHhhhccC---------cCcccchhhhcCCC---------------chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHh
Q 000049 2027 QILSVRTTA---------VLPHILPKLVHLPL---------------SAFNAHALGALAEVAGPGLNFHLGTILPALLSA 2082 (2629)
Q Consensus 2027 ~il~~~~~~---------ilp~Lip~L~~~~~---------------~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~ 2082 (2629)
.++...++. ....+++.+..... +.....++..+.++=.-.....-.+.+|.|++.
T Consensus 1075 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~l 1154 (2102)
T PLN03200 1075 SLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDL 1154 (2102)
T ss_pred HHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 333221111 11111111111000 001123444443321111222345779999999
Q ss_pred cCCCC--HHHHHHHHHHHHHHHhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhh--hH
Q 000049 2083 MGDDD--MDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD--EA 2151 (2629)
Q Consensus 2083 L~~~~--~~vr~~a~~al~~l~~~~~-------~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~--~~ 2151 (2629)
|+... +.+|..+...+..+....+ +.+.-+.+-.++....+. .....+..++..++.. .+... -.
T Consensus 1155 L~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~--s~e~a~~ElL~IL~~~--~e~~~~l~a 1230 (2102)
T PLN03200 1155 LKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQD--STEEAASELLRILFSS--PELRRHESA 1230 (2102)
T ss_pred hccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCcc--chhHHHHHHHHHHhCC--HHHHHHhhh
Confidence 97654 4678888877777764322 122222222222222211 1234455555555421 12211 12
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhH
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~il 2231 (2629)
...+..|+..+...+...|.+|..+|..++.... .+..+ .-...+
T Consensus 1231 ~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a~~ai 1275 (2102)
T PLN03200 1231 FGAVNQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LARQAV 1275 (2102)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hhhccc
Confidence 4567788888888888889888888888765311 00000 001234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchh-----hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCC
Q 000049 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-----PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2629)
Q Consensus 2232 p~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-----~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2629)
|.+...+.++....+..++.+|-.+++.-.. +.-.. ..+..++++|.+..+.+.+..+++.+..+.......
T Consensus 1276 ~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is---~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R 1352 (2102)
T PLN03200 1276 QPLVEMLNTGSESEQHAAIGALIKLSSGNPS---KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIR 1352 (2102)
T ss_pred hHHHHHhcccchhhhHHHHHHHHHHHcCCCC---hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHH
Confidence 5566667777778888888888888864321 11112 455667888888767778887777765432211111
Q ss_pred ccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 000049 2307 LKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2629)
Q Consensus 2307 l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~---------~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2629)
.++---..+..++..+.|+...++..|..+|-.|... ++-..+++. .+-.......+.++.+|..+.
T Consensus 1353 ~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~ 1428 (2102)
T PLN03200 1353 STPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLG 1428 (2102)
T ss_pred hhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHh
Confidence 1111122455666677776666789999999988543 222333333 332235566778888887776
Q ss_pred hhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC----hh---HHHHHHHHHHhhcCCCCchhhHhHH
Q 000049 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DG---QLADLLQELLNLASSPSWAARHGSV 2450 (2629)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~----~~---~~~~~l~~ll~~~~~~~~~~~~~~~ 2450 (2629)
...+....+....-+++.+..+++...+.++..+++.+.-+.-+-. ++ ...+++-.++. -....| +.|++.
T Consensus 1429 ~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~al 1506 (2102)
T PLN03200 1429 KDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTR-PDLGTW-GQHSAL 1506 (2102)
T ss_pred CCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhc-cCccee-cHHHHH
Confidence 3222222233344555666666666778888998888766543211 11 12344433332 222233 345566
Q ss_pred HHHHHHHhhCCccccCCh-hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCC
Q 000049 2451 LVFATFLRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS 2529 (2629)
Q Consensus 2451 ~~l~~~l~~~p~~~~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 2529 (2629)
.+|..++.+ |+...... -...+++.|...+.|.++.+++.|+++++.++....-+. +..-...++++++.+.+..
T Consensus 1507 ~~l~~i~e~-~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~ 1582 (2102)
T PLN03200 1507 QALVNILEK-PQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGI 1582 (2102)
T ss_pred HHHHHHHhC-cchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCC
Confidence 666655543 43322111 124678889999999999999999999998876653221 1223568999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhh
Q 000049 2530 SEVRRRALSALKSVAKANPSAIMVH 2554 (2629)
Q Consensus 2530 ~~vr~~al~~l~~~a~~~~~~v~~~ 2554 (2629)
...|+.|+.+|......-|..|..|
T Consensus 1583 ~~~~~~A~~aL~~~~~~w~~~v~~~ 1607 (2102)
T PLN03200 1583 LSLQQRAVKALESISLSWPKAVADA 1607 (2102)
T ss_pred hhHHHHHHHHHHHhhcccHHHHHHc
Confidence 9999999999988777666666543
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-25 Score=271.41 Aligned_cols=747 Identities=16% Similarity=0.257 Sum_probs=487.5
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh--hHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
-.+++.+|..|-.-|.++.. ..+..++..|-..+-+++. ..|.+-.. .|...|.
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~ 66 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLT 66 (859)
T ss_pred cCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhc
Confidence 34677888888888887764 3344444444444444432 23321111 1223344
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHH
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDA 1665 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~ 1665 (2629)
.++++.+....+-+-.+-. +. -..+-..++..|..+.|..+..|+.+++.++.. ++...++++++.|...
T Consensus 67 akd~~~k~~~~qRWl~l~~------e~---reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 67 AKDPERKQQYQQRWLQLPA------EI---REQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred cCCHHHHHHHHHHHHcCCH------HH---HHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 4455554444333322211 11 234556677888889999999999999999874 4455799999999988
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHH--h
Q 000049 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--Q 1737 (2629)
Q Consensus 1666 L~~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~--~ 1737 (2629)
..++++...+.+++.++|.++..+.++.+ ..++-.+++.... ++..||-++..+|-.--...+..|..-.+ .
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 88777667888999999999999988855 4566677776654 57889999988887666555555543322 3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchh----hhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i----~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
++......-..++..|+.+|+.++..|+..|-...- +.+++.....+++++..+...+++.-..+..
T Consensus 218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--------- 288 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--------- 288 (859)
T ss_pred eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---------
Confidence 666667777778889999999999988876533211 1133333333444444443333332222110
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-h---hHhhhHHHHHHH
Q 000049 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-K---TLKEIMPVLMNT 1889 (2629)
Q Consensus 1814 ~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~---~l~~~l~~Ll~~ 1889 (2629)
+. .+. +.+.=...-.+.| . --+.-++.++|.
T Consensus 289 -----------------EE-iD~---------------------------~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 289 -----------------EE-IDL---------------------------AIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred -----------------HH-HHH---------------------------HHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 00 000 0000000000111 0 011223345555
Q ss_pred HHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1890 LISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1890 L~~~L~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
|++.|. +.+|..-.+|..||.-+.+.+|+.+.|.++|++.+.++.+++.-|.++..++|.++..-.+..+.+.
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 555554 2457788999999999999999999999999999999999999999999999999987777888999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh-----hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcC
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID-----EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~-----~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~il 2037 (2629)
..+.+|.+...++|+.--||+.++++|+.+++........ ..++.+++.|.++.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP--------------------- 462 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP--------------------- 462 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc---------------------
Confidence 9999999999999999999999999999998876532221 12222222222211
Q ss_pred cccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Q 000049 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSEL 2117 (2629)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~L 2117 (2629)
.+......++-.|++.+..+.... ... ....+.+..++..|
T Consensus 463 ----------rva~N~CWAf~~Laea~~eA~~s~-------------~qt----------------~~~t~~y~~ii~~L 503 (859)
T KOG1241|consen 463 ----------RVASNVCWAFISLAEAAYEAAVSN-------------GQT----------------DPATPFYEAIIGSL 503 (859)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHhccCC-------------CCC----------------CccchhHHHHHHHH
Confidence 122223445555554221100000 000 00012234444555
Q ss_pred HhhcC--C-CChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2118 LKGVG--D-NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2118 l~~l~--d-~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
++.-. | .+...|.++..+|+.+.++++.+..+....+......-++. + .+ +.+.....+..+..+-.
T Consensus 504 l~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q----~----i~--~~~l~~~dr~q~~eLQs 573 (859)
T KOG1241|consen 504 LKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ----T----IS--SQILSLADRAQLNELQS 573 (859)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH----H----HH--HHhccHhhHHHHHHHHH
Confidence 44432 1 34567888888888888887776665544443333332210 0 00 01111111111111112
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
.+...+.....+ ++ ...+.....+|..|++.+.+ .+.-+.+.|..+++.++...| ..|..|++.+.
T Consensus 574 ~Lc~~Lq~i~rk-----------~~-~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~ 640 (859)
T KOG1241|consen 574 LLCNTLQSIIRK-----------VG-SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG-KGFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHH-----------cc-ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 222222221100 00 12234455678888887777 456678899999999999999 88999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH-HhccCChhHH
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPL 2350 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l-~~~~~~~~~l 2350 (2629)
+.|.+.+....+..|..++...++.+++.++..+.||...+++.++++|+++ +++|+-....++|.+ ..+..++++|
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Y 720 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPY 720 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999766678899999999999999999999999999999999999998 899999999999999 5577888888
Q ss_pred HHHHHHhhhcC-----C----------HHHHHHHHHHHHHHHhhcCCC----cChHHHHHHHHHHHHhhcCC--CHHHHH
Q 000049 2351 VGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGKS----VSSAVKIRVYSVLKDLVYHD--DDHVRV 2409 (2629)
Q Consensus 2351 l~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~~----~~~~~~~~i~~~L~~~l~~~--~~~vr~ 2409 (2629)
+..++..++.. | .++|+++++|...++...+.+ ...++++.|+.++...-.++ ++.+..
T Consensus 721 l~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~ 800 (859)
T KOG1241|consen 721 LEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHA 800 (859)
T ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 88877766421 1 688999999999999988732 23699999999998887765 478889
Q ss_pred HHHHHHHHHHhcCChh
Q 000049 2410 SAASILGIMSQCMEDG 2425 (2629)
Q Consensus 2410 ~aa~~Lg~L~~~~~~~ 2425 (2629)
.++..||.|+..+|..
T Consensus 801 ~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 801 AALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHHHHHHcccc
Confidence 9999999999998864
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=2.2e-21 Score=272.60 Aligned_cols=1374 Identities=14% Similarity=0.117 Sum_probs=772.3
Q ss_pred HhHHHhhcCC--CHHHHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHh
Q 000049 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYPDSIQ------GSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 1204 (2629)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~~la~~~~~~~~~~~------~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l 1204 (2629)
..+++.|.+. +...|+.+...|..+.+..++.-. +.+..|.... .. .+...|.-++.++..+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL----~s------g~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLL----RS------GTLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHH----cC------CCHHHHHHHHHHHHHH
Confidence 5566666654 667777777777776654433111 1222233221 11 2235676666777777
Q ss_pred hhhc-------CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-ccc------hhhhHHHHHHHhcccCCCh
Q 000049 1205 ADVL-------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKKASDE 1270 (2629)
Q Consensus 1205 ~~~~-------~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g-~~~------~~~Ll~~~~~~l~~~~~~~ 1270 (2629)
+..- ...-++.++. .+.+.+...|..+..+...+..... +++ ....+|.+-..+....+
T Consensus 86 S~~e~nk~~Iv~~GaIppLV~-----LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk-- 158 (2102)
T PLN03200 86 CKEEDLRVKVLLGGCIPPLLS-----LLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-- 158 (2102)
T ss_pred hcCHHHHHHHHHcCChHHHHH-----HHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch--
Confidence 5431 1122233333 3455578899988888776554321 111 13445555555654222
Q ss_pred hhhhhHHHHHHHHHHHHHhhhccCCCc-c-hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHH
Q 000049 1271 EKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLL 1343 (2629)
Q Consensus 1271 ~~~~~vr~~~v~~~~~La~~l~~~~~~-l-~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll 1343 (2629)
.+..+++.++..+..|+.+-+..... + ...++.+++.++++++.+|..++.++..++....+.. ...++.++
T Consensus 159 -~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 159 -QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLL 237 (2102)
T ss_pred -hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 22335666667777777654322111 1 2478899999999999999988887766654322211 23577788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHhcCCC--------CHHHHHHHHHHHHHHHHHhccC
Q 000049 1344 DQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRN--------SAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~~--------~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
+.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+.+.... +...++-|+.+++.++.+...
T Consensus 238 ~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~- 316 (2102)
T PLN03200 238 KLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSA- 316 (2102)
T ss_pred HHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchh-
Confidence 877655556889999999999997421 112223355666666664321 223466788888888864322
Q ss_pred chhHHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcH
Q 000049 1414 FEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSA 1453 (2629)
Q Consensus 1414 ~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~~l~~ 1453 (2629)
+-+++. .+.+.+.+.+.++++. +.+.+..++..++.+..-
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l 396 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYL 396 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Confidence 111111 1123333444333322 234444444332221100
Q ss_pred -HhH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1454 -QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1454 -~~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
..+ ....+.++..+...+...+..++..|..++.+..+....- -...+|.|.++|.+.++.+|+.|+++|+.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 000 2334455666666667888889999998886644432211 134689999999999999999999999999863
Q ss_pred cCc-h-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccc-cCChhh-hhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1530 IKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN-TVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2629)
Q Consensus 1530 ~~~-~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~-~~~~~~-l~~i~p~L~~~L~d~~~~vr~~a~~~l~~ 1602 (2629)
-.+ . .+ ...+|.|.+.+..++..++ +|..++....... ....-. -...+|.|.+.+++.+++.+..++.++.+
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 221 1 11 4678999999998888877 6777776422111 111111 13568888899999999999999999999
Q ss_pred HhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhccCCChHHH
Q 000049 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-------~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
+... ++. ..++.+..++..+++.++..+.++++.+......+. ...-+|.|.+.+.++. ...+
T Consensus 557 Li~~-~d~--------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ik 626 (2102)
T PLN03200 557 LVRT-ADA--------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQ 626 (2102)
T ss_pred HHhc-cch--------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHH
Confidence 9764 332 133556677888889999999999999877443321 2357888888887664 5577
Q ss_pred HHHHHHHHHHHHhhChh----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch-HhhHH-hHHHHHHhhcCCC
Q 000049 1676 SGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDGLADE 1749 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~-~ii~~ll~~L~d~ 1749 (2629)
..++..++.++..-... .....+|.++..+.+.+..+|..+..++..+.......- ..++. .++|++.+.+.+.
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 88888898888643221 125678999999999999999999999999996332221 12233 3899999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhc--hh-hhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1750 NESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1750 ~~~VR~~al~al~~iv~~~~~~--~i-~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
+.++++.++.++..++..-... .. ...+|.+.+.+.+.+.+.|..+...+..+....+ .+
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~----- 769 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VD----- 769 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hh-----
Confidence 9999999999999887643211 11 2357888888888899999999999888874421 00
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHH--HHHHHHHHHHhc--------ChhhHhhhHHHHHHHHHHHhcC
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ--AALHVWKTIVAN--------TPKTLKEIMPVLMNTLISSLAS 1896 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~--aA~~~l~~l~~~--------~~~~l~~~l~~Ll~~L~~~L~~ 1896 (2629)
..+.+... ..-.+.+|...++..+.+.-. .|++++..++.. .|....--.|.-+..++.++.+
T Consensus 770 ----~~~~~~~~---~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~ 842 (2102)
T PLN03200 770 ----DVLKDSVQ---CRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE 842 (2102)
T ss_pred ----HHHHHHHH---HhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc
Confidence 00111110 001233333344444444444 378888877762 1222222234456778888899
Q ss_pred CCHHHHHHHHHHHHHHHHHhc----cch--hhhHHHHH-hhhcCCCChhHHHHHHHHHHHHHHhhchhhH-----HHhHH
Q 000049 1897 SSSERRQVAGRALGELVRKLG----ERV--LPSIIPIL-SRGLKDPSASRRQGVCIGLSEVMASAGKSQL-----LSFMD 1964 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~----~~~--l~~llp~L-~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-----~~~l~ 1964 (2629)
.++.+...|+..|..+++.-+ +-+ .+..+..+ .+.+++.+.++|.|.+..|-.-.+.+....+ ..|..
T Consensus 843 ~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (2102)
T PLN03200 843 GHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLK 922 (2102)
T ss_pred CChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHH
Confidence 999999999999999986432 211 12222223 3456678888998766555433333322111 23566
Q ss_pred HHHHHHHHHhcCCcH------HHHHHHHHHHH-HHHHHh------Ch-hhhh-hhHHHHHHhccCcCc-------hhHHH
Q 000049 1965 ELIPTIRTALCDSIL------EVRESAGLAFS-TLFKSA------GM-QAID-EIVPTLLHALEDDQT-------SDTAL 2022 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~------~VR~~A~~al~-~l~~~~------g~-~~~~-~ilp~Ll~~L~~~~~-------~~~aL 2022 (2629)
.++..+..++...+. +++.... ... ..+... ++ .... .+--+|+..+-+.+. ..+++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~ 1001 (2102)
T PLN03200 923 LLIQALVDMLKQNSKKESLSIEIQTPRG-FLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGI 1001 (2102)
T ss_pred HHHHHHHHHHhccCcccccceeecCCcc-chhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccH
Confidence 677777766643221 1110000 000 001100 00 0011 112244444433221 13556
Q ss_pred HHHHHHHhhhccCcCcccchhhhcCC-CchhHHH-HHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000049 2023 DGLKQILSVRTTAVLPHILPKLVHLP-LSAFNAH-ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAET 2100 (2629)
Q Consensus 2023 ~~L~~il~~~~~~ilp~Lip~L~~~~-~~~~~~~-aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~ 2100 (2629)
+++.+-+..+... |+-.... ...|... .++.|.....-...|-.-.++|.|...+++++...|-.+..++..
T Consensus 1002 ~~~~~~~~~~~~~------~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~ 1075 (2102)
T PLN03200 1002 EVLTEKLASYTSN------RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALAS 1075 (2102)
T ss_pred HHHHHHHHhhccC------ccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 6666544322111 1100001 0111111 222222211111234445667777777877777777777777776
Q ss_pred HHhhccc------------cc-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHH
Q 000049 2101 VTLVIDE------------EG-------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161 (2629)
Q Consensus 2101 l~~~~~~------------~~-------~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~l 2161 (2629)
++..-+. .+ ...=++.|..... +..-+|.--..+|..+|+.-....+....+.++.|+.+
T Consensus 1076 ~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~l 1154 (2102)
T PLN03200 1076 LVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSE-EFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDL 1154 (2102)
T ss_pred HHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHH-HhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 6542111 01 1111222222211 11122222223455555544444555567788888888
Q ss_pred hcCCC--hhHHHHHHHHHHHHHhhcCcc--cc--cchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCc-c-----cchh
Q 000049 2162 LSDSD--STTVAAAWEALSRVVASVPKE--VQ--PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP-K-----ALQP 2229 (2629)
Q Consensus 2162 l~d~d--~~V~~~a~~aL~~l~~~~~~~--~l--~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~-k-----~l~~ 2229 (2629)
++... +.+|..|...|..+.+..... .+ ...++.+...+.............. .+.-+... + .-..
T Consensus 1155 L~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~E--lL~IL~~~~e~~~~l~a~~ 1232 (2102)
T PLN03200 1155 LKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASE--LLRILFSSPELRRHESAFG 1232 (2102)
T ss_pred hccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHH--HHHHHhCCHHHHHHhhhhh
Confidence 88554 367888888888887554321 00 0111222121111100000000000 00000000 0 0112
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch--hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
.++.+..-|..|+.+.|..|+.+|..+...- ..+... .+.++||+..+... ....+..++.+|-.+++.-..
T Consensus 1233 ~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~-~~~~~~~a~~ALvkL~kd~is-- 1306 (2102)
T PLN03200 1233 AVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTG-SESEQHAAIGALIKLSSGNPS-- 1306 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhccc-chhhhHHHHHHHHHHHcCCCC--
Confidence 4566777888899999999999999988652 222221 35677888877654 556677788888777653111
Q ss_pred cCchH-----HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHh-----ccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 000049 2308 KPFLP-----QLQTTFIKCLQDS-TRTVRSSAALALGKLSA-----LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2629)
Q Consensus 2308 ~p~lp-----~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~-----~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2629)
+.-.- .....+++.|.+. +.+++..++.....+.. ..+---..++.|++.+.+....+++.++.+|..+
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 11111 3455666777776 55666655555443211 0111124577777777764455589999888888
Q ss_pred HhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHH-----HHHHHHhhcCCCCchhhHhHHH
Q 000049 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVL 2451 (2629)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~~~~~~~ 2451 (2629)
+.....--...-.+.++.++. .+-..++.....+..+|-+++...|. .... .+..++-.+.......+. ...
T Consensus 1387 c~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~~~~-v~~Emv~~G~~~kllllLQ~c~~~lke-kAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKDRPP-CKLDMVKAGIIERVLDILPEAPDSLCS-AIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCCChH-HHHHHHHhCHHHHHHHHHHcCCHHHHH-HHH
Confidence 754211100011122233333 33344666677788888888744443 2222 222222111112222232 333
Q ss_pred HHHHHHhhCCccccCChhHHHHHHHHHhhhcCCC-hhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCH
Q 000049 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS 2530 (2629)
Q Consensus 2452 ~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~ 2530 (2629)
-+..++..++.....+.+..-+.+.+...+.++- ....-.|..++-.++++..... ...-...+.+.+++..|.+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~-~~~~~~~~~i~~Li~lL~s~~~ 1542 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLA-SLTLTPSQAIEPLIPLLESPSQ 1542 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhh-hhhcCccchHHHHHHHHcCCcH
Confidence 4456666666543344444445555555555442 3345568888887777643321 1113356789999999999999
Q ss_pred HHHHHHHHHHHHHHhhCchhhhh--hHHHHHHHHHhhhcCCcchhhhhHHHHH
Q 000049 2531 EVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERCA 2581 (2629)
Q Consensus 2531 ~vr~~al~~l~~~a~~~~~~v~~--~l~~l~p~l~~~~~~~~~~vk~aae~a~ 2581 (2629)
.+++.|...+..+..+.. ++. .-...+++|.+-+...+...|..|-+|+
T Consensus 1543 ~vqe~aa~ll~~l~~~~~--~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL 1593 (2102)
T PLN03200 1543 AVQQLAAELLSHLLAEEH--FQQDITTQNAVVPLVRLAGIGILSLQQRAVKAL 1593 (2102)
T ss_pred HHHHHHHHHHHHHhcchH--HhhhhhcccchHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999998886432 222 2255788888888877777787776666
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.4e-20 Score=225.18 Aligned_cols=675 Identities=18% Similarity=0.244 Sum_probs=463.2
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcc-chhhhHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhhhc
Q 000049 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLA 1292 (2629)
Q Consensus 1215 ~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~-~~~~Ll~~~~~-~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~ 1292 (2629)
.++..|+ -..+..+..|..+++.+..-..++|.. .++.++|++.. .| +|.-|+..+..+..+--.++
T Consensus 364 ~i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tL---------eDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTL---------EDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccc---------cchhhhhHHHHHHHHHHhhc
Confidence 3555442 235667778888888777766677765 45777776432 22 23345555555555544443
Q ss_pred c-CCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000049 1293 K-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2629)
Q Consensus 1293 ~-~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2629)
. ..|++..|+-.+-..+-|++...+..--+.++.|.+..+ ....+..+-..+. ..+.-+|...+.+.+.+++.+|.
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCc
Confidence 3 257777766555556667777666666566666655443 2222222222222 22456899999999999999987
Q ss_pred chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1372 ~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
.. ++++|+..+.++++|..|+.++.+...++.-.|...-||+..++..+-.++.|.+..||-.+..++..+++..
T Consensus 510 p~-----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 510 PA-----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred HH-----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 54 5689999999998999999999999999999998889999999999999999999999999999999999998
Q ss_pred cHHhH---HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh---hhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1452 SAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ---LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1452 ~~~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~---l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
.++++ ..++..|.++.....- ++-..+|.++.+.+|.. ...++ .+++-.+..-.+.++.+.++...+.+.
T Consensus 585 ~Pygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 585 TPYGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred CCcchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 88864 6777777777643211 12234556666655532 22222 345555666677788888888888888
Q ss_pred HHhhhcC-ch-hH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 1525 QVGSVIK-NP-EI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2629)
Q Consensus 1525 ~l~~~~~-~~-~i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~ 1601 (2629)
+++..-+ +| ++ .+++|.++...-. .|.|++ .++ -+...+.-.
T Consensus 662 qcc~t~Gv~~~y~r~dilp~ff~~fw~----rrmA~d----------------------------rr~---ykqlv~ttv 706 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIRFDILPEFFFSFWG----RRMALD----------------------------RRN---YKQLVDTTV 706 (1172)
T ss_pred HHhcccCCCHHHHhhhhhHHHHhhhhh----hhhhcc----------------------------ccc---hhhHHHHHH
Confidence 8876554 23 22 4556655543211 111111 000 111222333
Q ss_pred HHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHH
Q 000049 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERS 1676 (2629)
Q Consensus 1602 ~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~ 1676 (2629)
.+|..+|. +.++..+..-+.|..+..|..++.++..+...+|..-+ ..++..++-.++.++.. -.
T Consensus 707 ~ia~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~ 776 (1172)
T KOG0213|consen 707 EIAAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DS 776 (1172)
T ss_pred HHHHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hh
Confidence 44554554 23555555666778888999999999999888875422 34555555555544322 12
Q ss_pred HHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChh
Q 000049 1677 GAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENES 1752 (2629)
Q Consensus 1677 ~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~ 1752 (2629)
-...+++.++..+|.. ++..+...++..++++.+.+|+.+...++.++..+... =+..+..+=..++.+|..++++
T Consensus 777 vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypE 856 (1172)
T KOG0213|consen 777 VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPE 856 (1172)
T ss_pred hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHH
Confidence 3456788888888863 56778888888899999999999999999998766432 1233445556778899999999
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHH
Q 000049 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2629)
Q Consensus 1753 VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~ 1828 (2629)
|--..+.|+..|++..+-. .+..++|.+...+.+...++...++.++|.+...-+ +
T Consensus 857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E------ 916 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------E------ 916 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------c------
Confidence 9888999999998877432 466789999888999999999999999998863311 1
Q ss_pred HHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2629)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~ 1908 (2629)
..+...+-++.-.|...+...+..+|++|.+.++.++...+. ..++..|+..|+..+...|....-+
T Consensus 917 -------~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtva 983 (1172)
T KOG0213|consen 917 -------YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVA 983 (1172)
T ss_pred -------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhh
Confidence 111112223443444445566788999999999999986553 1345556666666666667766666
Q ss_pred HHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 000049 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2629)
Q Consensus 1909 L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~a 1988 (2629)
++-+.+.+|+- .++|.|..-.+.|+.+|++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|+.-|..|..+
T Consensus 984 IaIVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 984 IAIVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred hhhhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 76666666653 466777777788999999999999998887765 45578999999999999999999999988877
Q ss_pred HHHHH
Q 000049 1989 FSTLF 1993 (2629)
Q Consensus 1989 l~~l~ 1993 (2629)
+..+.
T Consensus 1060 I~Hl~ 1064 (1172)
T KOG0213|consen 1060 IKHLA 1064 (1172)
T ss_pred HHHHh
Confidence 76654
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1e-18 Score=229.62 Aligned_cols=649 Identities=17% Similarity=0.238 Sum_probs=429.9
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
...+...+...+.+.++..|++.+-++-.+...++..+...-..+.|...+...|.|.+.-++..|.+.+|-+.+--+.+
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34456667777888999999999999988887777666777778889999999999999999999999999877754445
Q ss_pred CchhhHHHHHHHhccCCCh---------------------HHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-CChh
Q 000049 1654 NFPDLVSWLLDALKSDNSN---------------------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRAS 1711 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~---------------------~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~ 1711 (2629)
.-.+++..|++++...... +........+..++..+|. +.++=.+|+.+++ ..|.
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWN 972 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhh
Confidence 5677888888777542210 0011122223334444443 2344455666665 5899
Q ss_pred hHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---hhhchhhhHHHHHhhccCCCc
Q 000049 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDN 1788 (2629)
Q Consensus 1712 vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~---~~~~~i~~llp~l~~~l~d~~ 1788 (2629)
-|.|+...|+.++...|...+||+.+++|.++.+=-|++..|+.+....+..++.. .-+++...++.++..++.+..
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999998766666665532 223355668888889999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHH
Q 000049 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868 (2629)
Q Consensus 1789 ~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l 1868 (2629)
||+|.+++-++.+++...+ . ..+. +...+++..+|..++|....||++|-.+.
T Consensus 1053 wRVReasclAL~dLl~g~~-------------~---------~~~~-----e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRP-------------F---------DQVK-----EKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCC-------------h---------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985311 0 0111 23446888888899999999999987666
Q ss_pred HHHHh--------cChhhHhhhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCC
Q 000049 1869 KTIVA--------NTPKTLKEIMPVLMNTLIS-SLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS 1936 (2629)
Q Consensus 1869 ~~l~~--------~~~~~l~~~l~~Ll~~L~~-~L~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~ 1936 (2629)
..+.+ ..+..-.+.+..++|.++. .+-+.-.++|..+..++-++++..|.. ..|.++|.+......-.
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccc
Confidence 55543 1223334566666666552 222556677777777777777777654 35566666666555433
Q ss_pred hhHHHH-HHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCc
Q 000049 1937 ASRRQG-VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2629)
Q Consensus 1937 ~~vR~~-a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2629)
+.+-.- +|.+ .+ .-.+.+...+....-..| -.++++.+..+......++++|.+.+.++.+
T Consensus 1186 ~~vLnYls~r~-~~------------~e~ealDt~R~s~akssp-----mmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1186 PQVLNYLSLRL-IN------------IETEALDTLRASAAKSSP-----MMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred hHHHHHHHHhh-hh------------hHHHHHHHHHHhhhcCCc-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 333211 1111 00 001111222211111111 1235666666666677778888877776654
Q ss_pred CchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHH
Q 000049 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2629)
Q Consensus 2016 ~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~ 2095 (2629)
-. + +.....+..+..|+.-.|.++.||.+.++.+++..++|.++.+|..-.
T Consensus 1248 Vg-------------------l----------~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1248 VG-------------------L----------GTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred CC-------------------C----------CcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHH
Confidence 21 0 112235666777777789999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhH---HHH
Q 000049 2096 EAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT---VAA 2172 (2629)
Q Consensus 2096 ~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V---~~~ 2172 (2629)
.+++.++....++....++..++..+-.+.+..+..+|..+..|..+....+..|...++|..+-...+.+.+. ++.
T Consensus 1299 sAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~d 1378 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWND 1378 (1702)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999988777777888888887777555555557777777778888888899999999998877665432111 111
Q ss_pred HHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCC--CcccchhhHHHHHHHHh-cCCHHHHHHH
Q 000049 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLI-SGSAELREQA 2249 (2629)
Q Consensus 2173 a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--l~k~l~~ilp~ll~~L~-~~~~~~r~~a 2249 (2629)
.|.. + +||-. .+-+...++-.+++... +..+.+|.++
T Consensus 1379 vW~e---~-------------------------------------vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~ 1418 (1702)
T KOG0915|consen 1379 VWAE---L-------------------------------------VSGGAGTVRLYLLEILNLICENITNNESWKLRKQA 1418 (1702)
T ss_pred HHHH---h-------------------------------------CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence 1110 0 11110 01122334444444444 4468999999
Q ss_pred HHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHH
Q 000049 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329 (2629)
Q Consensus 2250 a~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~v 2329 (2629)
+.++..++..+....-.|++..+...+...+..| .|+-|.-.+.++...+.++...+..-.|.+.....+...-.+...
T Consensus 1419 Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~~~y 1497 (1702)
T KOG0915|consen 1419 AKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRREAKY 1497 (1702)
T ss_pred HHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHHhHH
Confidence 9999999887764444477777777777777777 788888888888877776655444444433333333333223344
Q ss_pred HHHHHHHHHHH
Q 000049 2330 RSSAALALGKL 2340 (2629)
Q Consensus 2330 R~~Aa~aLg~l 2340 (2629)
+..+..+.|..
T Consensus 1498 ~~~ala~~~~~ 1508 (1702)
T KOG0915|consen 1498 KIMALAGAGLA 1508 (1702)
T ss_pred HHHHHhhhHHH
Confidence 44444444443
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=8.1e-20 Score=221.99 Aligned_cols=716 Identities=16% Similarity=0.232 Sum_probs=488.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhh-hccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
..++..+..|..+...+..=...+.+. -+++++|.+++. |++ +.|+--+..+..+.+.......++..+|+=.+-
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD---qerhllVkvidriLyklDdlvrpYVhkILvVie 447 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED---QERHLLVKVIDRILYKLDDLVRPYVHKILVVIE 447 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc---hhhhhHHHHHHHHHHhhcccchhceeeeEEEee
Confidence 347777888888766665555555443 458888888764 444 346777788888888777777777777776667
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
.++-|++...|....+.+.++++..+ +..++..+-.-+.+.++++|. +....+ ++--.+.+.|.|
T Consensus 448 pllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavva--------salgip~llpfL 516 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVA--------SALGIPALLPFL 516 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHH--------HHhCcHHHHHHH
Confidence 78889999999888888888887655 233333333334455667773 222221 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000049 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2629)
Q Consensus 1582 ~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ 1657 (2629)
.....++ +|.-|..+..++..+|..+|. .+.||+..++..+...+.|....||..++.+++.+++..++ +.|+.
T Consensus 517 kavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDs 594 (1172)
T KOG0213|consen 517 KAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDS 594 (1172)
T ss_pred HHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999998876 67899999999999999999999999999999999998765 46888
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhH---H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHh
Q 000049 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p 1733 (2629)
++..|.+.+..+.+. .-.....+++.++.-+..++ + .++|-.+.+-.++++.+.+...+..+...|..-|-+ ..
T Consensus 595 VlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 888888888766543 22233344555554444442 2 566777788889999999999999999999887753 12
Q ss_pred hH-HhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1734 YL-QQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1734 ~l-~~ii~~ll~~L~d~~~~VR~~al---------~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
|+ .+++|.++..... |..|. +.-..+++..+ .+.++..+...+.|++...|...++++..++
T Consensus 673 y~r~dilp~ff~~fw~-----rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWG-----RRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHhhhhhHHHHhhhhh-----hhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHH
Confidence 43 3578887765432 22222 11122222222 2234455556677888888888888777776
Q ss_pred HhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH
Q 000049 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2629)
Q Consensus 1804 ~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2629)
..++.. |-+ ..+.+ +++..++..+.+....+. .-+..++.++...+...++|+
T Consensus 745 ~~lg~~-----------did-------erleE--------~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 745 GRLGAA-----------DID-------ERLEE--------RLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred hccccc-----------ccc-------HHHHH--------HHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccch
Confidence 443211 001 11111 122222222221111111 345677778887888889999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---ccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhH
Q 000049 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2629)
Q Consensus 1884 ~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~---~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2629)
|.+...++.+|+++.+.+|+.|+..++.++..+ ++. .+.++=-+|-+.+....|++--.++.++..+...+|-..+
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887654 332 5666666777888889999988888888888877776666
Q ss_pred HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHH---HHHHhccCcCchhHHHHHHHHHHhhhccC
Q 000049 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVP---TLLHALEDDQTSDTALDGLKQILSVRTTA 2035 (2629)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-~~~~ilp---~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ 2035 (2629)
.+-..+++|.+...|.+.++.|.++....++.++.....- ...+.+- .|++.|.+..
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk------------------- 938 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK------------------- 938 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH-------------------
Confidence 6677889999999999999999999999999988753321 1122222 1222222110
Q ss_pred cCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHH
Q 000049 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVS 2115 (2629)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~ 2115 (2629)
..++-.+...||.|++..|+ ..++..|++.|+.++...|....-+++.+...++ .-.++|
T Consensus 939 -----------K~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---pFtVLP 998 (1172)
T KOG0213|consen 939 -----------KEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---PFTVLP 998 (1172)
T ss_pred -----------HHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---chhhhH
Confidence 01122355788999998886 4788888988877666666544444444433332 446788
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHH
Q 000049 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2629)
Q Consensus 2116 ~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~ 2195 (2629)
.|+.-...++..+++..+.++..+|+..+..-.+|+-.+.+.|-..+-|.|..-|+.|..++..+.-..+
T Consensus 999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~---------- 1068 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP---------- 1068 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC----------
Confidence 8888888899999999999999999998888888888889988888989998888888877776643322
Q ss_pred HHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
|+.....+..++..+--.+...++.+.....+|+-.+....|+..+-.|+
T Consensus 1069 ------------------------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1069 ------------------------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred ------------------------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 22211222223333333344556666666677777777777766555553
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.8e-21 Score=237.81 Aligned_cols=515 Identities=22% Similarity=0.306 Sum_probs=378.7
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCC
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~ 1588 (2629)
.|+++.||.....+.......-++..+..+.|.+-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788889998888777766655444455555555554443221
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhcc
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~ 1668 (2629)
+..+|....-..+.++... ...+. -...++..+...++.|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~--~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDP--RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCc--chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 1234444444444444432 22232 2345788888889999999999999999998876655545556666666666
Q ss_pred CCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhcCCC-hhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1669 ~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~-~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
......|.+++.+++.+..+.|...+ ..++..+.+...+.+ ...|++++.++......+|..|+||+..++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34466899999999999999888766 456777777777764 445668999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc
Q 000049 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2629)
Q Consensus 1746 L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~ 1825 (2629)
..|..+.||.++..+...++..++..+++.++|.+...+.+..||.+.++++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999999998999999999999998875532
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHH
Q 000049 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVA 1905 (2629)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A 1905 (2629)
..+. ....++++.+...++|+..+||+++..++..+...... +-+..++|.++.++.+++..+.. +
T Consensus 287 -----~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~ 352 (569)
T KOG1242|consen 287 -----KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-C 352 (569)
T ss_pred -----HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-H
Confidence 1111 13345677777778999999999999999888763322 22555666777778887743322 2
Q ss_pred HHHHH--HHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-chhhHHHhHHHHHHHHHHHhcCCcHHHH
Q 000049 1906 GRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2629)
Q Consensus 1906 ~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2629)
...|+ .++..+.+..+.-++|++.+++.+++...+..++..++.+.... .+..+.+|++.++|.+...+.|+.|+||
T Consensus 353 ~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 22222 34444555678899999999999999999999999999888777 5678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC---chhHHHHHHHHHHhhhccCcCcccchhhhcC--------CCch
Q 000049 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSA 2051 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~--------~~~~ 2051 (2629)
..++++++.+.+..|.+.++...|.+.+.+.++. .+..+.+++.+++...+.......+|.+... .+..
T Consensus 433 ~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 433 AVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence 9999999999999999988999999999986643 3456777788777543333222233322211 1111
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000049 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2629)
Q Consensus 2052 ~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2629)
.....+..+-...|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 513 g~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred CeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 1222333444456777888888888888888887777666555443
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.89 E-value=5e-17 Score=193.49 Aligned_cols=665 Identities=13% Similarity=0.172 Sum_probs=414.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH---
Q 000049 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--- 1694 (2629)
Q Consensus 1619 ~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--- 1694 (2629)
++-...+..|..+.|..-..|+..++.++.. ++...+++++..+.....++++...+..+...++.++....++.+
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 3455567788899999999999999999984 444578899988888877777777778888889999888777543
Q ss_pred -HhHhHHHHHhhc--CCChhhHHHHHHHHHHhhhhhccchHh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1695 -EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1695 -~~llp~l~~~l~--~~~~~vR~~a~~~l~~L~~~~g~~f~p--~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
..++-.+..... .++..+|-+++.++..-.....+.|.. -...++......-+.+++++..+++.++..++..|-
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 357789999998887744433333321 123356666666677888999999999888876542
Q ss_pred hc---hhhh-HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHH
Q 000049 1770 TT---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845 (2629)
Q Consensus 1770 ~~---~i~~-llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~v 1845 (2629)
.- ..+. +.....+++.+.+.++...+++.-..+... + -+ . ..-...+. ++
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE--------------e--id-~----~~e~~~~p-----e~ 307 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE--------------E--ID-G----EMEDKYLP-----EV 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--------------H--hh-h----HHHHhhcc-----cC
Confidence 21 1111 222233444555555555544443333210 0 00 0 00000000 00
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhh
Q 000049 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLP 1922 (2629)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2629)
+ .+.. .+ ........+|.++..+.+.=. +.+|.....|..||.-+.+..|+.++.
T Consensus 308 -p-----~qn~-------------~f---a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~ 365 (858)
T COG5215 308 -P-----AQNH-------------GF---ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR 365 (858)
T ss_pred -c-----hhhc-------------ch---HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH
Confidence 0 0000 00 001234455666655554322 346788999999999999999999888
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
.++..+++.++.+++.-|.++..++|.++..-....+.+++++.+|.+...+.|+.--|++.+++||+.+.+++....-.
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p 445 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISP 445 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999998876667788899999999999999998899999999999998765431100
Q ss_pred -hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC-chhHHHHHHHHHHHhCCC---hhhhHhhhHH
Q 000049 2003 -EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALGALAEVAGPG---LNFHLGTILP 2077 (2629)
Q Consensus 2003 -~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~aL~~La~~~g~~---l~~~l~~il~ 2077 (2629)
..++... ...+.+ +++.|. ......++-.+...+... ...++..
T Consensus 446 ~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~--- 494 (858)
T COG5215 446 CGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK--- 494 (858)
T ss_pred cccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHH---
Confidence 0011000 001111 111121 111122222222211111 0111111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhc--CCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 000049 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV--GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI 2155 (2629)
Q Consensus 2078 ~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l--~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il 2155 (2629)
....++..|+... .+.+...|.+...+||.+....+...++.+..+.
T Consensus 495 -------------------------------fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~ 543 (858)
T COG5215 495 -------------------------------FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543 (858)
T ss_pred -------------------------------HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 1112222222221 2334456666666777666555443333322222
Q ss_pred HHHHHHh-----------cCCC----hhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2156 STLIVLL-----------SDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2156 ~~Ll~ll-----------~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
.....-+ .-.| +++..+-...|..++++.+.+.
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i-------------------------------- 591 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI-------------------------------- 591 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------------------------------
Confidence 2211111 1111 2233333333333333222211
Q ss_pred CCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
...-..+|..|++.+.+. ..-.......+|+.+....+ +.|..|++.+++.|.+.++. .+..+...+...++.+
T Consensus 592 ---e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdl 666 (858)
T COG5215 592 ---EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDL 666 (858)
T ss_pred ---ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence 011123666677766665 33455567888888888887 78999999999999999965 3778999999999999
Q ss_pred HHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC---C-----------
Q 000049 2300 IRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS---D----------- 2362 (2629)
Q Consensus 2300 ~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l-~~~~~~~~~ll~~Ll~~l~~~---d----------- 2362 (2629)
.+.++.++.+|...++..++++++++ +++++-....++|.+ ..+...+.+|+..++..++.. +
T Consensus 667 antl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy 746 (858)
T COG5215 667 ANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDY 746 (858)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHH
Confidence 99999999999999999999999997 899999999999999 456778888888877665421 1
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCc--ChHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCChhHHHHH
Q 000049 2363 -AGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLADL 2430 (2629)
Q Consensus 2363 -~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~Lg~L~~~~~~~~~~~~ 2430 (2629)
..++..+..|+-.|........ ..||+-+|+..+-....|++ +...+++..+||.|+..+|..++..+
T Consensus 747 ~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~ 819 (858)
T COG5215 747 RKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFG 819 (858)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhc
Confidence 3445555666666665544222 25899999999877777763 45557888999999999998655443
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=4.7e-18 Score=203.26 Aligned_cols=666 Identities=16% Similarity=0.167 Sum_probs=431.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCcc-chhhhHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhH
Q 000049 1226 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 1302 (2629)
Q Consensus 1226 ~d~~~~Vr~~~~~a~~~~i~~~g~~-~~~~Ll~~~~~-~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~ 1302 (2629)
.+.+...|...++....-..++|.. .++.++|++.. .+. |.-|+.++.++..+--.++.. .|++..|+
T Consensus 178 KNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 178 KNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred ccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 4556677777777766655567765 45788886443 332 334555666666655445432 56776665
Q ss_pred HHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHH
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~ 1382 (2629)
-..-..+-+++..++..--+.+..|+...+-. ..+..+-..+ ++.+.-+|...+.+.+.+++.+|.+ .+.++
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 55555666777777665555555555544311 1111111111 2334568999999999999988865 46789
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---Hhh
Q 000049 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 1459 (2629)
Q Consensus 1383 L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~i 1459 (2629)
|+..+.++++|..|+.++.+...+++-+|...-+|+..++..+-.++.|.+..||-.+..++..+++...++++ ..+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99999988899999999999999999999888899999999999999999999999999999999999888864 667
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhh----CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC-chh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NPE 1534 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~----~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~~ 1534 (2629)
+..|.++.....-. .-..+|.++.+. .|+....+-.+.+..++..++.++.+.+...........++-. .|+
T Consensus 401 l~pLw~g~~~hrgk---~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 401 LCPLWEGASQHRGK---ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHhcCCc---hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHH
Confidence 77777665422111 112334444433 2333322233455555566666655554443333322222111 121
Q ss_pred --HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1535 --IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1535 --i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
.+++.|.++...- .-|.|. ..++...-..+..+ +++..++
T Consensus 478 ~lr~~v~pefF~~fw----~rr~A~----------------------------dr~~~k~v~~ttvi---lAk~~g~--- 519 (975)
T COG5181 478 KLRDQVSPEFFSPFW----RRRSAG----------------------------DRRSYKQVVLTTVI---LAKMGGD--- 519 (975)
T ss_pred HHHHhhcHHhhchHH----Hhhhcc----------------------------cccccceeehhHHH---HHHHcCC---
Confidence 1333333332210 000000 00011111111122 2232233
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000049 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2629)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~ 1687 (2629)
+.+...+...+.|+....|..++.+...+...+|..-+ ..++..++..++.++.. + .-..-+++.+..
T Consensus 520 -----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~v 592 (975)
T COG5181 520 -----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVLV 592 (975)
T ss_pred -----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEecccceee
Confidence 23667777778888888899999998888887775432 33444555555443211 1 011223344433
Q ss_pred h---hChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1688 A---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1688 ~---~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
. .|+.++..++..++..+.++.+.+|+.+....+.++..+..- =...+..+-..++..+..++++|--..+.|+..
T Consensus 593 sl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 593 SLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred ehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 3 345577888899999999999999999999988888765420 023455566678888998889888888888888
Q ss_pred HHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhch
Q 000049 1764 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839 (2629)
Q Consensus 1764 iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~ 1839 (2629)
|.....-. .+..++|.+...+.++..++....+.++|.+....+ ++.|.
T Consensus 673 I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p---------------------------eyi~~ 725 (975)
T COG5181 673 IYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP---------------------------EYIGV 725 (975)
T ss_pred HhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc---------------------------ccCCH
Confidence 77655433 456688888888888999999988888888753211 12222
Q ss_pred hhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000049 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2629)
Q Consensus 1840 e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~ 1919 (2629)
..+-++.-.|...+...+.++|+.|.+.++.+....+. ..++..++..|+..+...|....-+++-..+.+|+-
T Consensus 726 rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 726 REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 22334444444445667789999999999999876553 234556666777777777887777787777777753
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000049 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2629)
.++|.+..-...|+..+++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|+.-|..|...+..+.
T Consensus 800 ---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 800 ---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred ---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 456777777788999999999999998887765 4456799999999999999999999988876665543
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.85 E-value=1e-16 Score=192.06 Aligned_cols=712 Identities=16% Similarity=0.147 Sum_probs=455.7
Q ss_pred HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC
Q 000049 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...|+.+..-|..=+-.+|+..+- ..+++.+.+.- -+.+.|+-.+..+..+..++++.-.||+..|+-.+-..+-|
T Consensus 182 ~~mR~~~lRiLtdkav~fg~~~vf-nkvLp~lm~r~---LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllid 257 (975)
T COG5181 182 KRMRMEGLRILTDKAVNFGAAAVF-NKVLPMLMSRE---LEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLID 257 (975)
T ss_pred chhhHHHHHHHHHHhhcccHHHHH-HHHHHHHHhhh---hhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccC
Confidence 467888888888777778876653 24555543321 23457888888899999999988889999888777778888
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~ 1511 (2629)
++..+|-...+.+..+ ++.+. |..++..+-.-+.+.
T Consensus 258 ed~~~r~~g~eii~nL--------------------------------------~~~~G------l~~~vs~mrpDi~~~ 293 (975)
T COG5181 258 EDLKRRCMGREIILNL--------------------------------------VYRCG------LGFSVSSMRPDITSK 293 (975)
T ss_pred ccHHHhcccHHHHHHH--------------------------------------HHHhc------cceeeeeccCCcccc
Confidence 8888775543333222 22111 111222222334667
Q ss_pred CHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCC-CH
Q 000049 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SA 1590 (2629)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~-~~ 1590 (2629)
++.||+....+.+.+++.++-+ .+.|.+.....++ +|
T Consensus 294 deYVRnvt~ra~~vva~algv~------------------------------------------~llpfl~a~c~SrkSw 331 (975)
T COG5181 294 DEYVRNVTGRAVGVVADALGVE------------------------------------------ELLPFLEALCGSRKSW 331 (975)
T ss_pred cHHHHHHHHHHHHHHHHhhCcH------------------------------------------HHHHHHHHHhcCccch
Confidence 8999999999999998877622 2334444444444 78
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhc
Q 000049 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ll~~Ll~~L~ 1667 (2629)
+-|.....+...+|..+|. ...+|+..++..+.+++.|....||-.++.+++.+++..|+ +.|+.++..|.+..+
T Consensus 332 ~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~ 409 (975)
T COG5181 332 EARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGAS 409 (975)
T ss_pred hhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999988775 56789999999999999999999999999999999998775 367888887877776
Q ss_pred cCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch-HhhHHhHHHHH
Q 000049 1668 SDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAI 1742 (2629)
Q Consensus 1668 ~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~~ii~~l 1742 (2629)
++.+. +-.....+.+-++.-+.+++. .+.+..+...+++++.+.+...+.. ...|...|..- .-+..++.|.+
T Consensus 410 ~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v-~~~C~~v~~~tp~~lr~~v~pef 487 (975)
T COG5181 410 QHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVV-ERICDKVGTDTPWKLRDQVSPEF 487 (975)
T ss_pred hcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHH-HHHHhccCCCCHHHHHHhhcHHh
Confidence 55433 222223334444444455543 5667777778888877776654443 34444444321 12234555655
Q ss_pred HhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1743 LDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1743 l~~L~d~~~~VR~~al---------~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
++..- .|..|. .+-..+.+..+. +.+...+.+...|+....|...+.+....+..++...-..
T Consensus 488 F~~fw-----~rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dE 559 (975)
T COG5181 488 FSPFW-----RRRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDE 559 (975)
T ss_pred hchHH-----HhhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccH
Confidence 54332 111111 111111111111 2233444555566655555555555555443332110000
Q ss_pred ccc---------C-CCCCCcccHHHHHHH------HHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh---c
Q 000049 1814 LLE---------G-GSDDEGASTEAHGRA------IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA---N 1874 (2629)
Q Consensus 1814 ~~~---------~-~~ede~~~~~~~~~~------l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~---~ 1874 (2629)
..+ . .+++..++ -..+. -.+..|..+...+++.+...+....+.||+.|.+.++.++. +
T Consensus 560 rleerl~d~il~Afqeq~~t~~--~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~ 637 (975)
T COG5181 560 RLEERLYDSILNAFQEQDTTVG--LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKA 637 (975)
T ss_pred HHHHHHHHHHHHHHHhcccccc--EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh
Confidence 000 0 00000000 00000 02334455667788888888888899999999999988875 3
Q ss_pred ChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1875 TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1875 ~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
++. ...+..+-..+.+.+....+++--....++..+....+-. -...++|.+...|+++...+..+....++.+
T Consensus 638 c~e--~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I 715 (975)
T COG5181 638 CGE--TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTI 715 (975)
T ss_pred cch--HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHH
Confidence 333 2345566666778888888888777777777766655432 1234444445555566667777766666765
Q ss_pred HHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCch-----hHHHHH
Q 000049 1951 MASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-----DTALDG 2024 (2629)
Q Consensus 1951 i~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-----~~aL~~ 2024 (2629)
... +++.. ...+-.|.=.+...|...+.++|.+|..+||-+.+.+|+ .+++..|++.|+..+.. ..++..
T Consensus 716 ~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~RvctsvaI~i 791 (975)
T COG5181 716 CMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVCTSVAISI 791 (975)
T ss_pred Hhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhhhhhhhhh
Confidence 443 33321 122334444556677778899999999999999999998 47888899999776532 234444
Q ss_pred HHHHHhhhccCcCcccchhhhcCCC--chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000049 2025 LKQILSVRTTAVLPHILPKLVHLPL--SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT 2102 (2629)
Q Consensus 2025 L~~il~~~~~~ilp~Lip~L~~~~~--~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~ 2102 (2629)
..+.|+ .-.++|.++....+|.. +....+|+..+.+..|++-..|+-.|.|.|-++|.|.++.-|+.+...+..++
T Consensus 792 Vae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 792 VAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred hHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 444443 23466766666665553 33345777778888899989999999999999999999999999999999998
Q ss_pred hhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 000049 2103 LVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2629)
Q Consensus 2103 ~~~~----~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~ 2178 (2629)
..+. ++..-.+++.|..++-++.|.+.++..+++..|....+.. .++..+..-+-.+...||+.-|..++
T Consensus 870 Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g------~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 870 LNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG------AMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred cCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH------HHHHHHHHhccCchHHHHHHHHHHHh
Confidence 8763 2446778888888889999999999888888887654321 23333344444688899999998887
Q ss_pred HHH
Q 000049 2179 RVV 2181 (2629)
Q Consensus 2179 ~l~ 2181 (2629)
.+-
T Consensus 944 ~my 946 (975)
T COG5181 944 IMY 946 (975)
T ss_pred hhh
Confidence 763
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.81 E-value=6.5e-17 Score=212.23 Aligned_cols=558 Identities=21% Similarity=0.252 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc
Q 000049 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2629)
Q Consensus 1350 ~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2629)
++.+.|.....-+..+...+|.... ...++|++.+.+ ++ +..+...+..-|+.+....| ...|...++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhh
Confidence 3567777777778888877777665 457999999998 44 56667666665665554433 1233345667777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhH-HHHHHHHHHHhhCc-hhhhhhccchHHHHhhh
Q 000049 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ-SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEV 1507 (2629)
Q Consensus 1430 ~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~-~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~ 1507 (2629)
.+.+..||+.+.+.+..+...++.......+-.++..+...+|+..+ .++.+++..+-..+ ..+. .++-|....+
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~~~~l 245 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPIVQSL 245 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHHHHhh
Confidence 88889999999999999999888887766666777777777887644 45666666655555 3344 3445556778
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCchhH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
++|..+.||.+++.-++.+++.+.+... ..++|.+... ..
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~~ 286 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------LR 286 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------hh
Confidence 9999999999999999999988764322 3334444444 34
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHH
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDA 1665 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-~~~ll~~Ll~~ 1665 (2629)
|....+|..|...+.++...+..+. +....+.+.+.+...|+++.+|.........+...+|++. .....+.....
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNL 363 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHH
Confidence 4445666777777777766654421 4456688888899999999999999999999999998863 45556666666
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1666 LKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1666 L~~~~~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
+++.. ...|...+.-..++......+ ....++|.+...+.+.+.++|.+.......+...+|. ..-+....|
T Consensus 364 ~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp 440 (759)
T KOG0211|consen 364 LKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLP 440 (759)
T ss_pred hcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccCh
Confidence 65443 335555555566665555422 2356679999999999999999888877777777763 344667889
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHh---hhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1741 AILDGLADENESVRDAALGAGHVLVEHY---ATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~iv~~~---~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
.....++|+...||......+....... +.. ..+.++|.+.....|.+||+|.+.++.+..++.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q----------- 509 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ----------- 509 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh-----------
Confidence 9999999999999998876554333322 222 2345889988888888999999998888776532
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh-ccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~ 1895 (2629)
+|.+++++.+..+++. +.|....+|++|...+..++..+|. ..+...+++.++....
T Consensus 510 --------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 510 --------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDL 567 (759)
T ss_pred --------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhc
Confidence 2333444444444433 5777889999999999999987772 3444556666666677
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHh
Q 000049 1896 SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2629)
Q Consensus 1896 ~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2629)
++++-.|.+...++..++..+|.. ....++|.+..+..|+.+++|.+++..|..++......... ..+.|.+....
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhc
Confidence 778999999999999999999987 56889999999999999999999999998887665544333 45677777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHHh
Q 000049 1975 CDSILEVRESAGLAFSTLFKSA 1996 (2629)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l~~~~ 1996 (2629)
.|++.+||..|..+++.+....
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHH
Confidence 7999999999999998876543
No 23
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.65 E-value=2.3e-13 Score=179.23 Aligned_cols=529 Identities=18% Similarity=0.231 Sum_probs=380.6
Q ss_pred hhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhc-CCCcHHHHHHHHHhhhhhHhh
Q 000049 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVL-NTPSEAVQRAVSSCLSPLMQS 1330 (2629)
Q Consensus 1252 ~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L-~~~~~~Vq~~~~~~L~~l~~~ 1330 (2629)
...++|.|.+.. . ..+++.+.+..-+|.+..+.. -+.+..++...++.+ .+....|+..+++++......
T Consensus 119 r~~lipf~~e~~-~------~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAE-D------DEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhc-c------chhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888777 2 356677776666666655531 223333333333333 334456888888888777666
Q ss_pred hccch-HHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000049 1331 MQDEA-PTLVSRLLDQLMKSDKY-GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2629)
Q Consensus 1331 ~~~~~-~~ll~~ll~~L~~~~~~-~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~ 1408 (2629)
..+.. .+.+..++..+... +| +.|..++...+..+....+..++ ..+.+...+..++. ++.+|.++..-++.++.
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~ 266 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAK 266 (759)
T ss_pred cChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHH
Confidence 55433 35566677777666 45 44555555556666656555554 35677777888876 79999999999999998
Q ss_pred HhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhhccCChhhhHHHHHHHHHHH
Q 000049 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1409 ~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la 1486 (2629)
..+. ......++|.+.....|....||.+|..++..++..+... ..+.+.+.+++..++..|+++....+....+.
T Consensus 267 ~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 267 VLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 8775 2334467888888889999999999999999998877665 45789999999999999999988777766655
Q ss_pred hhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhH--HhHHHHHHhccCCCChhHHHHHHHHH
Q 000049 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2629)
Q Consensus 1487 ~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i--~~lvp~Ll~~l~d~~~~~r~al~~L~ 1561 (2629)
...... ..-+..++.....++|...++|.++..-...+...... +.+ +.++|.+.....|.+.++|.+.....
T Consensus 345 ~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 345 SAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 432222 22356778889999999999999999888888876652 222 56789998888999988885543221
Q ss_pred h--ccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHH
Q 000049 1562 Q--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2629)
Q Consensus 1562 ~--~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2629)
. ....+ .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+.++|.+..+..|..|.+|.+.
T Consensus 423 ~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai 499 (759)
T KOG0211|consen 423 TGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAI 499 (759)
T ss_pred cccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence 1 00111 2345567888888899999999999888777554443 33334556778889999998889999999999
Q ss_pred HHHHHHHHhhhCCCCchhhHHHHH-HHhccCCChHHHHHHHHHHHHHHHhhChhH-HHhHhHHHHHhhcCCChhhHHHHH
Q 000049 1640 ARAIGSLIRGMGEENFPDLVSWLL-DALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~~~~~ll~~Ll-~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~-l~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
...+..++...|..++.+.+..+. ..+.+ .-...|.+++..+..++..+|.+. ...++|.++....++++..|...+
T Consensus 500 l~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l 578 (759)
T KOG0211|consen 500 LEYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTL 578 (759)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHH
Confidence 999999999888666554443333 33333 235688899999999999999542 367788888888888899999999
Q ss_pred HHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-HHHHHhhccCCCchHHHHHHH
Q 000049 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~-llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
.++..++..+|..+ +...++|.+.....|..++||..+++.+..++..+.....+. +.|.++....|.+-.+|..+.
T Consensus 579 ~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 579 FSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred HHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHH
Confidence 99999999999965 567899999999999999999999999999988776554443 666666555555444444444
Q ss_pred HHHHHH
Q 000049 1797 ELLGDL 1802 (2629)
Q Consensus 1797 ~ll~~l 1802 (2629)
...+.+
T Consensus 657 ~a~~~i 662 (759)
T KOG0211|consen 657 LAFGSI 662 (759)
T ss_pred HHHHHH
Confidence 444443
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.1e-13 Score=159.42 Aligned_cols=425 Identities=17% Similarity=0.228 Sum_probs=307.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhhHHHHHhh-hccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
+.++++|+--+-|++|..-+..++..+... .+.+++..+... ..+.+-..|+|++..+.+++-+-...-..++..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 445677777778888877777776654332 356666655543 345566667788888887776533333348899
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHH---HHHHHHhccccccCC-hh
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVD-AP 1572 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~---al~~L~~~~~~~~~~-~~ 1572 (2629)
++|.++.++.|++..||..||+++-++++..+. +++..++..+.+...|.+..+|. -++.+++ ..+..-+ .-
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLik-dIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIK-DIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHH-Hhcccccccc
Confidence 999999999999999999999999999998876 36689999999999999888874 4455554 2232222 56
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+++.++|.+...+...++.+|.....++..+-.. + .-++..|++.+++++.+.|.|+.++||..+-.+++.+...+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~- 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR- 240 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-
Confidence 7899999999999999999999999999887664 2 246789999999999999999999999999888887665432
Q ss_pred CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++.+. . ..++.++.+...+.++++.++..++.++..+....|.++.
T Consensus 241 ---------------s~P~s-~------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 241 ---------------SSPSS-M------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred ---------------cCccc-c------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 21111 0 1233445566667788888999999999999999999999
Q ss_pred hhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhc----hh--hhHHHHHhhccCCCchHHHHHHHHHHHHHHHh
Q 000049 1733 NYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~iv~~~~~~----~i--~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~ 1805 (2629)
+|+..++..+++++.+.++ .++..+...-..+...++.. .+ ..++..+...+.++....|.++++.+..+..+
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 9999999999999998877 46666654433333333222 13 35888888999999999999999999887755
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHH
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ 1885 (2629)
.+|.. +. +.+.+...+...++|.+..|-..++.++..++..... +....
T Consensus 367 ~p~ql----------------------~~------h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~ 415 (675)
T KOG0212|consen 367 APGQL----------------------LV------HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRK 415 (675)
T ss_pred Ccchh----------------------hh------hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHH
Confidence 43211 11 2334666667778999999999999999999874332 12233
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1886 Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
++..+++++.....-.+.-+.-.+..++..+.+
T Consensus 416 fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 416 FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 344444555554444555566666666655543
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.7e-12 Score=156.78 Aligned_cols=464 Identities=16% Similarity=0.189 Sum_probs=334.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH
Q 000049 1889 TLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2629)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2629)
.+.+.+.+.-++.|..|+.-+..+++.+-.. ....++. ...+...+++...|.|...+++.+.-..|.+... |.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~ 82 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YL 82 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HH
Confidence 3456677888899999999999888866332 2334444 3334556777888889999998877777776665 99
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchh
Q 000049 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2629)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~ 2043 (2629)
..+++.+..++.|+|..||..|++.+..+.+
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK------------------------------------------------- 113 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAK------------------------------------------------- 113 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHH-------------------------------------------------
Confidence 9999999999999999999998876655433
Q ss_pred hhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHH
Q 000049 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-----EEGVESLVSELL 2118 (2629)
Q Consensus 2044 L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~-----~~~~~~ll~~Ll 2118 (2629)
++..++..|++.|...+-+...|.+..+|.. .+.++.++..+. .-++..++|.|-
T Consensus 114 -------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 114 -------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLR 173 (675)
T ss_pred -------------------HhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHHHHHH
Confidence 3344455566777777777777777777654 345555555432 124889999999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHH
Q 000049 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2629)
Q Consensus 2119 ~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~ 2198 (2629)
.++...++.+|+..+.++..+-...+.++..|++.++..|+.++.|+.++||..+-.+++.+......+-
T Consensus 174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P---------- 243 (675)
T KOG0212|consen 174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP---------- 243 (675)
T ss_pred HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc----------
Confidence 9999999999999999999999888899999999999999999999999999998888888765432110
Q ss_pred HHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH
Q 000049 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2629)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2629)
+ ++. .....+++...+.++.++.+..|..-|.++++-.| ..+-+|.+.|.+.++.
T Consensus 244 ------~--------------s~d----~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 244 ------S--------------SMD----YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILP 298 (675)
T ss_pred ------c--------------ccC----cccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhccc
Confidence 0 001 11234555566677888999999999999997766 7888999999888888
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccC---chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc-----CChhHH
Q 000049 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKP---FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPL 2350 (2629)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p---~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~-----~~~~~l 2350 (2629)
.+.+..+..++..+...-+.+..-++..... -+..++..+.+.+.+..++.|..+...+-.+-.-. -+.+++
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i 378 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI 378 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH
Confidence 8887655456666666555555433321111 12468889999999999999999999988884332 357899
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHH
Q 000049 2351 VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADL 2430 (2629)
Q Consensus 2351 l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~ 2430 (2629)
++.|+..+.+++..|-...+.-+.+++..-.. ..+++-+.++| +++....--++.-+.-.+..+|..+.++.+-..
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL-~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~ 454 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLL-EMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRS 454 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHH-HHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHH
Confidence 99999999998888988888888888865332 23444444444 344444444555566677788888887765555
Q ss_pred HHHHHhhcCCCCchhhHhHHHHHHHHHhhCCcc
Q 000049 2431 LQELLNLASSPSWAARHGSVLVFATFLRHNPSA 2463 (2629)
Q Consensus 2431 l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~ 2463 (2629)
+-.++.+..+-. ....++.+|+.++..+|+-
T Consensus 455 ~a~ILe~e~nl~--FAstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 455 IADILEREENLK--FASTMVQALNTILLTSTEL 485 (675)
T ss_pred HHHHHhccccch--HHHHHHHHHHhhhcccHHH
Confidence 555555422222 3445777888888777754
No 26
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.8e-08 Score=131.84 Aligned_cols=586 Identities=17% Similarity=0.188 Sum_probs=295.7
Q ss_pred HHHHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhhhC-cchh------hh----hcHHHHHHHHhcCCCCHHHHHHHH
Q 000049 1337 TLVSRLLDQLMKS-----DKYGERRGAAFGLAGVVKGFG-ISSL------KK----YGIAATLREGLADRNSAKRREGAL 1400 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~-----~~~~~R~~Aa~~L~~l~~~lg-~~~l------~~----~~i~~~L~~~l~~~~~~~~R~~Al 1400 (2629)
..++.+++.|..+ .+|..|..-..-|.-++...- .+.+ .+ ..|+.+...++... +..|.+|.
T Consensus 119 ~~Le~il~lL~~~npss~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aa 196 (1133)
T KOG1943|consen 119 SDLEPILDLLERQNPSSFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAA 196 (1133)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 3455566666521 368888888888887776421 1111 11 24555555566554 35555665
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHhhcH---------------------H---
Q 000049 1401 LAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVA--VREAAECAARAMMSQLSA---------------------Q--- 1454 (2629)
Q Consensus 1401 ~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~--VR~aa~~al~~i~~~l~~---------------------~--- 1454 (2629)
.+++.+.... ...+++...+..++.+-.+..++ +.-....++..+....+. +
T Consensus 197 lllsk~~sR~--D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~ 274 (1133)
T KOG1943|consen 197 LLLSKLFSRT--DVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQS 274 (1133)
T ss_pred HHHHHHcccc--cHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHh
Confidence 5554443211 13344555555555554444443 112223333333322111 1
Q ss_pred hHHhhHHHHHhhh-------ccCChhhhHHHHHHHHHHHhh--Cch-------------hhhhhccchHHHHhhhhcCCC
Q 000049 1455 GVKLVLPSLLKGL-------EDKAWRTKQSSVQLLGAMAYC--APQ-------------QLSQCLPKIVPKLTEVLTDTH 1512 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L-------~~~~w~~r~~a~~~L~~la~~--~p~-------------~l~~~L~~ivp~L~~~L~D~~ 1512 (2629)
...+.++.+++.+ .+.+|+..++.-.+.+++-.. +|. .....+..++..++..++|.+
T Consensus 275 llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~d 354 (1133)
T KOG1943|consen 275 LLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTD 354 (1133)
T ss_pred HHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCc
Confidence 2356677777743 246799888766555553321 111 122334567778888999999
Q ss_pred HHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh-hH--HHHHHHHHhccccccCChhhhhhHHHHHHHhhcC--
Q 000049 1513 PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HT--KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-- 1587 (2629)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~~--r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d-- 1587 (2629)
..||..|++.++.+...++-.-.+..+...++.+. |-+ .. -.++-++......+-+-+..+..++|.+..++.-
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999988772223555555555332 211 11 1222233221222333445677899999988732
Q ss_pred ------CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000049 1588 ------RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2629)
Q Consensus 1588 ------~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~-~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~ 1660 (2629)
....+|.+||-++-.+++. -++.++.|++..+.+.+. ..+-|+.-.+|.+|..++-..+...|. ++.=++
T Consensus 434 ~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~ 510 (1133)
T KOG1943|consen 434 RRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGIS 510 (1133)
T ss_pred hhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchh
Confidence 2457999999999999987 467889999998887765 456699999999999998877665443 221122
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1661 ~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
.+ .. .+.-+...|..+...+...+..+ ..|...++.
T Consensus 511 Li-s~-~dy~sV~~rsNcy~~l~~~ia~~------------------------------------------~~y~~~~f~ 546 (1133)
T KOG1943|consen 511 LI-ST-IDYFSVTNRSNCYLDLCVSIAEF------------------------------------------SGYREPVFN 546 (1133)
T ss_pred hh-hh-cchhhhhhhhhHHHHHhHHHHhh------------------------------------------hhHHHHHHH
Confidence 11 01 11111223333333333332222 223333333
Q ss_pred HHHhh-cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDG-LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~-L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.++.. +.+-+..+|+.+..++..+....+....+..+|.+.......+-..|.++.-..|+++.......+ + .
T Consensus 547 ~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~-~-~---- 620 (1133)
T KOG1943|consen 547 HLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEP-V-I---- 620 (1133)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhh-h-h----
Confidence 33322 444444455555455444433333333333444444444444444444444444443322111100 0 0
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC--ccHHHHHHHHHHHHHHHhcChhhHhhhHHH-HHHHHHHHhcC
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLAS 1896 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D--~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~-Ll~~L~~~L~~ 1896 (2629)
....+ ..+. ....+++.++...-+ ....+|.+....+..+..+.++.+.+++-. ....+.+.+.+
T Consensus 621 ---~~l~e---~~i~------~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~ 688 (1133)
T KOG1943|consen 621 ---KGLDE---NRIA------GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL 688 (1133)
T ss_pred ---hhhHH---HHhh------hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc
Confidence 00000 0000 001112222211111 113567777777777766655544443333 33334445556
Q ss_pred CCHHHHHHHHHHHHHHHHHhc--cchh-hhHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhchhhHHHhH-HHHHHHHH
Q 000049 1897 SSSERRQVAGRALGELVRKLG--ERVL-PSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIR 1971 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~--~~~l-~~llp~L~~~L~d~-~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~ 1971 (2629)
++ .+|..|..++++++...- +... ..++......+.+. +..+|++...+++.+- .+.+.-++ +.+...+.
T Consensus 689 ~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp----~~~i~~~~q~~lc~~~l 763 (1133)
T KOG1943|consen 689 PN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP----SELIHRHLQEKLCKLVL 763 (1133)
T ss_pred hH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc----HHhhchHHHHHHHHHHh
Confidence 66 899999999999986542 2111 12333333344444 6778888877776542 11221122 22222222
Q ss_pred HHh-cCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1972 TAL-CDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
... .|..++.|.....++..+++..+
T Consensus 764 ~~~p~d~~a~aR~~~V~al~~v~~~~~ 790 (1133)
T KOG1943|consen 764 ELLPSDAWAEARQQNVKALAHVCKTVT 790 (1133)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 221 22355566666666665555433
No 27
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.9e-07 Score=125.22 Aligned_cols=291 Identities=16% Similarity=0.164 Sum_probs=189.4
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcc------CChhHHHHHHHHh
Q 000049 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS------TRVDPLVGDLLSS 2357 (2629)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~------~~~~~ll~~Ll~~ 2357 (2629)
++-.+.++-.+++.++...+. .||+..+...+++.+.+. ++-.|..-.-++|.+-++. .+.+.-+..++..
T Consensus 889 ~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal 966 (2067)
T KOG1822|consen 889 NPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLAL 966 (2067)
T ss_pred ChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHH
Confidence 556677788888888887765 478888888888887775 6666666677777774432 2344445566666
Q ss_pred hhcCC-HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2358 LQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD---DDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2358 l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
.+++. +.|+.+.++|+..++...|+.. ..++..-+..+..++... .-+++....+|++ |++....++..
T Consensus 967 ~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~------~~~~~~alitt 1039 (2067)
T KOG1822|consen 967 ATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN------GDDDEDALITT 1039 (2067)
T ss_pred hhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc------cchhHHHHHHh
Confidence 66655 6999999999999998877765 666666666666665543 3345555555544 22222233332
Q ss_pred HHhhcCCCC---c-hhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCC
Q 000049 2434 LLNLASSPS---W-AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509 (2629)
Q Consensus 2434 ll~~~~~~~---~-~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2629)
+.+.+.++. . ..-++..++-+.++..+++...+ ...+.++.+ +..+.++.
T Consensus 1040 lgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnq----a~ai~clqq--------------------lhlFapr~-- 1093 (2067)
T KOG1822|consen 1040 LGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQ----AAAIKCLQQ--------------------LHLFAPRH-- 1093 (2067)
T ss_pred cccccCCCCcccchhHHHHHHHHHHHHhcCCCccchH----HHHHHHHHH--------------------HHhhcchh--
Confidence 222222221 1 11223344444555544443321 122333332 23333331
Q ss_pred CchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhh-hcCCcchhhhhHHHHHHHHhccc
Q 000049 2510 NTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC-LKDGSTPVRLAAERCAVHAFQLT 2588 (2629)
Q Consensus 2510 ~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~-~~~~~~~vk~aae~a~~~l~~~~ 2588 (2629)
.+...++..++..+.+...-.|++++.++++++++....+..|...+.+.+... ..+.+.--..+.|+++..+++.+
T Consensus 1094 --~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e 1171 (2067)
T KOG1822|consen 1094 --VNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTE 1171 (2067)
T ss_pred --ccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCc
Confidence 467889999999999999999999999999999999999999888877755443 34444322567799999999988
Q ss_pred cCchhHHHHHHHh----hhhhhhhhccC
Q 000049 2589 RGSEYIQGAQKFI----TGLDARRLSKF 2612 (2629)
Q Consensus 2589 ~~~~~~~~~~~~l----~~~~~~~l~~~ 2612 (2629)
.+......+.+++ +++....|+.|
T Consensus 1172 ~d~~l~~~I~~tl~~~~~~~~~~~ls~W 1199 (2067)
T KOG1822|consen 1172 TDNKLLKNILETLSRMLNSLADELLSSW 1199 (2067)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8878777777776 45666677777
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.4e-07 Score=125.29 Aligned_cols=756 Identities=17% Similarity=0.169 Sum_probs=419.3
Q ss_pred cchhhHHHHHhhcC--CCcHHHHHHHHHhhhhhHhhhccch------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1297 KVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~--~~~~~Vq~~~~~~L~~l~~~~~~~~------~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~ 1368 (2629)
++..++..|...+. ..+..|.+.+..||..++...+... ...+..++.... ++...+|..|..+++.+..+
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcC
Confidence 44555555555554 5677899999999999987743221 233333433333 33467899999999999985
Q ss_pred hCc--chhh--hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1369 FGI--SSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1369 lg~--~~l~--~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
.+- .... ...+..+..+.++..-.+......+..|..|-..+...-.+.+..+...++..++..+..|+-.+.+++
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l 248 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCL 248 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 431 1110 001233333333332222222233333333333333334577888999999999999999999999999
Q ss_pred HHHHHhhcHH----hHHhhHHHHHhhhcc-CChhhhHHHHHHH----HHHHhhCchhhhhhccchHHHHhhhhcCCCHHH
Q 000049 1445 RAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQLL----GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKV 1515 (2629)
Q Consensus 1445 ~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~L----~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~V 1515 (2629)
..++...++. ....++..+.+.--+ .+...-.+-+..+ ..++...++..-..+|.+++.++.++...++++
T Consensus 249 ~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 249 HSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 8887755442 223444444332211 1111111112222 233333444444557888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHH
Q 000049 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2629)
Q Consensus 1516 R~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~ 1595 (2629)
-.++-+++..+.+.... +.+.++.. .+...+.-+...+-+.
T Consensus 329 ~q~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHH
Confidence 88888888888753221 11111110 1111222222244455
Q ss_pred HHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHH
Q 000049 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
+.+++..++..+|. ...|++-..+..+-..=.+++..-+...-.|+|+.+.++|++.+-.++|.=+ ..+.....|
T Consensus 370 ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R 444 (1176)
T KOG1248|consen 370 ILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR 444 (1176)
T ss_pred HHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch
Confidence 66777777776665 3456655555555554445666667788899999999999886666666322 111111122
Q ss_pred HHHHHHHHHHHHhhChhHH-HhHhHHHHHhh------c---CCChhhHHHHHHHHHHhhhhhc--cchHhhHHhHHHHHH
Q 000049 1676 SGAAQGLSEVLAALGTVYF-EHILPDIIRNC------S---HQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAIL 1743 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~~l-~~llp~l~~~l------~---~~~~~vR~~a~~~l~~L~~~~g--~~f~p~l~~ii~~ll 1743 (2629)
.=..-.|-.-+.+....+| +.++|..++.- . +.....+.-..++|+-|+..|. .+...-+..+.|.+.
T Consensus 445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~ 524 (1176)
T KOG1248|consen 445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 (1176)
T ss_pred hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence 1000011111111222233 44555443321 1 1122456666777887777663 455555677788888
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHHh-hh-----------chhhhHHHHHhhccCCC------chHHHHHHHHHHHHHHHh
Q 000049 1744 DGLADENESVRDAALGAGHVLVEHY-AT-----------TSLPLLLPAVEDGIFND------NWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1744 ~~L~d~~~~VR~~al~al~~iv~~~-~~-----------~~i~~llp~l~~~l~d~------~~~vR~sa~~ll~~ll~~ 1805 (2629)
..+.... +.|.....++..+++.- +. .....++|.+.+.-... .-+.|...++.+....++
T Consensus 525 ~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~ 603 (1176)
T KOG1248|consen 525 AALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT 603 (1176)
T ss_pred HHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence 7777654 88999888888887642 11 11122444443322111 111222222222211111
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH----HHHHHHHHHHHHHhcChhhHhh
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS----VRQAALHVWKTIVANTPKTLKE 1881 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~----VR~aA~~~l~~l~~~~~~~l~~ 1881 (2629)
.++ .+....+.+.+|. ...|.+.. .+..-++.+..++...+. .
T Consensus 604 ~t~------------------~dv~~~l~~s~~e------------~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~ 650 (1176)
T KOG1248|consen 604 VTP------------------TDVVGSLKDSAGE------------LASDLDESVASFKTLSLLDLLIALAPVQTE---S 650 (1176)
T ss_pred ccc------------------HHHHHHHHHHHHh------------HhccchhhhhhHHHHHHHHHHHhhhccccc---h
Confidence 000 0000111111111 11121111 122223333333332221 2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc-----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch
Q 000049 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2629)
Q Consensus 1882 ~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~-----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~ 1956 (2629)
.+..+....-...++.+..++.-+.+.|.++...-. ......+...+...+++.....+...+.++..++..++.
T Consensus 651 ~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 651 QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 222222222222345578899999999999887611 123455666666667777777888899999988887763
Q ss_pred hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCch-hHHHHHHHHHHhhhccC
Q 000049 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTA 2035 (2629)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ 2035 (2629)
....++...+|.+.-.+.+.+...|..|..++-.+... -..+..+++. ...
T Consensus 731 -e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i-------------~~~~d~g~e~~~~~-------------- 782 (1176)
T KOG1248|consen 731 -EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAI-------------QSSLDDGNEPASAI-------------- 782 (1176)
T ss_pred -HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHH-------------HhhhcccccchHHH--------------
Confidence 33445566666666666888888888887776655420 0001111110 001
Q ss_pred cCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhh----cccccHH
Q 000049 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEGVE 2111 (2629)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~----~~~~~~~ 2111 (2629)
+.+|+. .+...+..+...++...+-++..++.. ++.+.+.
T Consensus 783 --------------------------------lnefl~----~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 783 --------------------------------LNEFLS----IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred --------------------------------HHHHHH----HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 111222 222222222222332224444444443 3456688
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchh-hhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccc
Q 000049 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190 (2629)
Q Consensus 2112 ~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~-~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2629)
.+++.+...+.+..+.++.+|+..+..++...+. .+.+|.+.+++.++.+..|....+|.....-+..+++..+.+.+.
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 8999999999999999999999999999887664 478899999999999999999999999999999999998877666
Q ss_pred chHHH
Q 000049 2191 SYIKV 2195 (2629)
Q Consensus 2191 ~l~~~ 2195 (2629)
.+++.
T Consensus 907 ~~~pe 911 (1176)
T KOG1248|consen 907 SFLPE 911 (1176)
T ss_pred hhCHH
Confidence 65553
No 29
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.1e-07 Score=123.67 Aligned_cols=759 Identities=15% Similarity=0.130 Sum_probs=416.8
Q ss_pred HHHHHHHHhhhCCC----CchhhHHHHHHHhcc-CCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCC
Q 000049 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKS-DNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQR 1709 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~-~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~ 1709 (2629)
+.+|..+...++.. .|.+++..+...+.. ..+..++..+..+|+.++..-+.+.| ...+-.++...-+..
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~ 151 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKK 151 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCc
Confidence 34444455544432 345555555555542 22344666777788888776555544 233445555666778
Q ss_pred hhhHHHHHHHHHHhhhhhc---cchHhhHHhHHHHHHhhcCCCC-hhHHHHHHHH---HHHHHHHhhhchhhhHHHHHhh
Q 000049 1710 ASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADEN-ESVRDAALGA---GHVLVEHYATTSLPLLLPAVED 1782 (2629)
Q Consensus 1710 ~~vR~~a~~~l~~L~~~~g---~~f~p~l~~ii~~ll~~L~d~~-~~VR~~al~a---l~~iv~~~~~~~i~~llp~l~~ 1782 (2629)
|.+|..+...+..+...-+ ..-.|-...+...+++.+.... +......++. ++..+..++...++.+-..+..
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 8888888777766554111 1111222222222222222111 1111222222 3333334455566666667777
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc---cCccHH
Q 000049 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLS 1859 (2629)
Q Consensus 1783 ~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~---~D~~~~ 1859 (2629)
.+...+..++..+++++..+....++ ... .+...+++..++... +|.-..
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~--------------~l~-------------a~~~a~lL~al~~l~ps~~D~~~t 284 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPT--------------ALA-------------AELNARLLTALMTLSPSENDDLLT 284 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCC--------------cch-------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 77777777888899988888754321 000 011123333333322 222111
Q ss_pred HH--HHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH-HHhhhcCCCC
Q 000049 1860 VR--QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPS 1936 (2629)
Q Consensus 1860 VR--~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~ 1936 (2629)
+. ..-......++...+.......|.+++.++..+.+..++.-+.+.+++.++...... +.+.+-. .+..++.-+.
T Consensus 285 ~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf 363 (1176)
T KOG1248|consen 285 VAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF 363 (1176)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH
Confidence 10 001111122333345555667788888888888888888888888888887754322 2222222 2444555555
Q ss_pred hhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC
Q 000049 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2629)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2629)
..+-..+...+..+.+.+|+ ...+++...+..+...=.+++..-+..--.++|.-...+|+..+=.++|-=+.......
T Consensus 364 ~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~ 442 (1176)
T KOG1248|consen 364 HAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSF 442 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcccccccc
Confidence 55556666677777777765 33444444444443322334433344455677887888888766666664331111111
Q ss_pred chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc------CCCC--H
Q 000049 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM------GDDD--M 2088 (2629)
Q Consensus 2017 ~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L------~~~~--~ 2088 (2629)
.+ .-|+|.|.+. +-|..+.-|...++|...+.. .... .
T Consensus 443 ~R-------------------sWLLPvLR~~---------------i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 443 TR-------------------SWLLPVLRDY---------------IIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred ch-------------------hHhHHHHHHh---------------hccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 11 1122222211 123444445555555444332 1111 1
Q ss_pred -HHHHHHHHHHHHHHhhc----cc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc---------hhhhhhhHHH
Q 000049 2089 -DVQSLAKEAAETVTLVI----DE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS---------KLYLVDEAPN 2153 (2629)
Q Consensus 2089 -~vr~~a~~al~~l~~~~----~~-~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~---------~~~~~~~~~~ 2153 (2629)
.++....+.|+.+-.-+ |. ..+..+-+.+...+... +..|...|.+|..+.+.. ...++.|..+
T Consensus 489 ~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Akn 567 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhH
Confidence 12222222232222211 11 23666666676666443 589999999999887653 1346778888
Q ss_pred HHHHHHHHhcCC------ChhHHHHHHHHHH-HHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc-----ccccCC
Q 000049 2154 MISTLIVLLSDS------DSTTVAAAWEALS-RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP-----ILIPGF 2221 (2629)
Q Consensus 2154 il~~Ll~ll~d~------d~~V~~~a~~aL~-~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~-----~~l~g~ 2221 (2629)
.++.++...... ....+...+.... ..+...+++....+...+........+.... .+... ..+...
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~-~~~~slLdl~~~~a~~ 646 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVAS-FKTLSLLDLLIALAPV 646 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhh-HHHHHHHHHHHhhhcc
Confidence 999999887633 2234444444444 4444445444333333332222111110000 00000 000000
Q ss_pred CCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC-hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000049 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS-EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2629)
Q Consensus 2222 ~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~-~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~ 2300 (2629)
....++..+..+.-....+.+..++.-+...|..++..-+ ......++..|...|...++. .....+...+.+|..+.
T Consensus 647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLL 725 (1176)
T ss_pred ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 1112333333111122223467788888999999887611 112333444444444444443 35678899999999999
Q ss_pred HhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--------cC---ChhHHHHHHHHhhhcCCHHHHHHH
Q 000049 2301 RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--------ST---RVDPLVGDLLSSLQVSDAGIREAI 2369 (2629)
Q Consensus 2301 ~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~--------~~---~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2629)
+..+.....|+|.+++-++=++.+.|...|..|..||-.+..+ .| .+++++..|-.++-....-++.+-
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 9999777788999888888778777999999999999888632 12 456667777666544334444444
Q ss_pred HHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH----HhhcCCCCchh
Q 000049 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL----LNLASSPSWAA 2445 (2629)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l----l~~~~~~~~~~ 2445 (2629)
+-|+..++...+..++.++...+++.+...+.+....++.+|...+..++..+|+..+.++++++ +.|........
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 88999999999998999999999999999999999999999999999999999987766666544 45544444333
Q ss_pred hHhHHHHHHHHHhhCCccc
Q 000049 2446 RHGSVLVFATFLRHNPSAI 2464 (2629)
Q Consensus 2446 ~~~~~~~l~~~l~~~p~~~ 2464 (2629)
|...-..+-.+++.++-..
T Consensus 886 r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHH
Confidence 4333334445555554433
No 30
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.8e-07 Score=117.49 Aligned_cols=712 Identities=18% Similarity=0.199 Sum_probs=353.5
Q ss_pred hhhhhhHHHHHHHhhcCCCHH--HHHHHHHHHHHHhhhcCCCCcccchHh---hhHHHHHHHhc------CCCHHHHHHH
Q 000049 1571 APSLALLVPIVHRGLRERSAE--TKKKAAQIVGNMCSLVTEPKDMIPYIG---LLLPEVKKVLV------DPIPEVRSVA 1639 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~--vr~~a~~~l~~l~~~~~~~~~l~~~l~---~ll~~L~~~L~------d~~~~VR~~A 1639 (2629)
+|.+..++|.+...+.....+ .-..+.+.+..+|+.-|. +.+..++| .-+..+...++ ...++.|...
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgy-K~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryil 145 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGY-KAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYIL 145 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccc-hhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 344555555554444332111 223444556666665332 33222222 12222333333 2357777777
Q ss_pred HHHHHHHHhh------hCC-----CC--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hChhHHHhHhHHHHHhh
Q 000049 1640 ARAIGSLIRG------MGE-----EN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNC 1705 (2629)
Q Consensus 1640 ~~aL~~l~~~------~g~-----~~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l 1705 (2629)
..-+..++.. +.+ +. +..++......+.... ..|..++..++.+... -+.+.+..++..++..-
T Consensus 146 LlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~ 223 (1133)
T KOG1943|consen 146 LLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCP 223 (1133)
T ss_pred HHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHHHHHHhhccc
Confidence 7777666542 111 11 1222222222333332 3566677777766532 22333455555555443
Q ss_pred cCCCh--hhHHHHHHHHHHhhhhhc-cchHhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 000049 1706 SHQRA--SVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSLPLLLPAV 1780 (2629)
Q Consensus 1706 ~~~~~--~vR~~a~~~l~~L~~~~g-~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~~i~~llp~l 1780 (2629)
+...+ ..+-+.+..+..+.+... ++..||....+..+-..-.+.+. -+|+ .+-.+++.+|-.
T Consensus 224 s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK----llvKl~QRiGlv--------- 290 (1133)
T KOG1943|consen 224 STETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK----LLVKLVQRIGLV--------- 290 (1133)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH----HHHHHHHHhhhe---------
Confidence 33222 255677777777666654 34556655555444332222221 1221 122222211110
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHhhc-CCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH
Q 000049 1781 EDGIFNDNWRIRQSSVELLGDLLFKVA-GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2629)
Q Consensus 1781 ~~~l~d~~~~vR~sa~~ll~~ll~~~~-~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2629)
.-.-...+||.....-.+.+.+ ..-+ +.+.+..... +++|+++. ..+ .+.++..++..++|.+..
T Consensus 291 ~l~prs~sWrY~rg~rsl~~nl-~~~s~~~~~~~~~~~-~d~e~edv----~ei--------vE~vie~Lls~l~d~dt~ 356 (1133)
T KOG1943|consen 291 SLKPRSPSWRYSRGTRSLASNL-DPDSFAPSEPVILQQ-DDDEGEDV----PEI--------VEFVIEHLLSALSDTDTV 356 (1133)
T ss_pred ecCCCCcchhhhcccchhhhcc-CccccccCccccccc-cccccccc----HHH--------HHHHHHHHHHhccCCcch
Confidence 0111346898654433222222 1110 0111111111 12222211 112 224556666778999999
Q ss_pred HHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--ccchhhhHHHHHhhhcCC--
Q 000049 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPILSRGLKD-- 1934 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L~~~L~d-- 1934 (2629)
||-.|++.++.+....|.. .....+..++..++--+ +..=..|+-+|+++...- -+..++.++|.+..++.-
T Consensus 357 VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~ 433 (1133)
T KOG1943|consen 357 VRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV 433 (1133)
T ss_pred hhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998854 44455555666554322 223335666777776532 122456888888876652
Q ss_pred ------CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000049 1935 ------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2629)
Q Consensus 1935 ------~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~-~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2629)
....+|-++|+.+-.+...+.+..+.+++..+.+.+. .++-|++-.+|.+|..||-. .+|...
T Consensus 434 ~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE---~VGR~~------- 503 (1133)
T KOG1943|consen 434 RRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE---NVGRQG------- 503 (1133)
T ss_pred hhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH---HhccCC-------
Confidence 3356899999999888888899999999988888866 47789999999998777654 344310
Q ss_pred HHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCC
Q 000049 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2629)
Q Consensus 2008 Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~ 2087 (2629)
.+|.-++.... .+-.+++..+.
T Consensus 504 ----------------------------n~p~Gi~Lis~-----~dy~sV~~rsN------------------------- 525 (1133)
T KOG1943|consen 504 ----------------------------NFPHGISLIST-----IDYFSVTNRSN------------------------- 525 (1133)
T ss_pred ----------------------------CCCCchhhhhh-----cchhhhhhhhh-------------------------
Confidence 00110000000 01112222111
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC
Q 000049 2088 MDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~-l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d 2164 (2629)
|...+...+. +.+..++++.++.. +.+-|..+|..++++|..+....+..+..| .++.++.....
T Consensus 526 ---------cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~---~L~~lld~~ls 593 (1133)
T KOG1943|consen 526 ---------CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY---VLPPLLDSTLS 593 (1133)
T ss_pred ---------HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc---chhhhhhhhcC
Confidence 1111111111 12234444444443 556666777777777777665555444433 34555565666
Q ss_pred CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc-CC-
Q 000049 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GS- 2242 (2629)
Q Consensus 2165 ~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~-~~- 2242 (2629)
.+...|....-+.+.++....+-. |.+.....+. + .++..++|.+...-.+ |.
T Consensus 594 ~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i------~~l~~ii~~~~~~~~~rg~~ 648 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I------AGLLSIIPPICDRYFYRGQG 648 (1133)
T ss_pred CChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h------hhhhhhccHHHHHHhccchH
Confidence 666666666666666665443321 0000000000 0 0111122222211111 11
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2243 AELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
.-.|...+..+-.+... ....+..++.. ...-+...+.. +..+|.++...++.++...-..=.-+...++...+..
T Consensus 649 ~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~ 725 (1133)
T KOG1943|consen 649 TLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSR 725 (1133)
T ss_pred HHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHH
Confidence 11222222222222211 11111122211 11112222322 3378999999999888643111011112477777777
Q ss_pred cCCC-CHHHHHHHHHHHHHHH--hccCChhHHHHH-HHHhhhc-CCHHHHHHHHHHHHHHHhhcCCCc----ChHHHHHH
Q 000049 2322 LQDS-TRTVRSSAALALGKLS--ALSTRVDPLVGD-LLSSLQV-SDAGIREAILTALKGVLKHAGKSV----SSAVKIRV 2392 (2629)
Q Consensus 2322 L~d~-~~~vR~~Aa~aLg~l~--~~~~~~~~ll~~-Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~----~~~~~~~i 2392 (2629)
+.+. ++.+|.-...++|.+- .++.+....+-. ++...-. ..++-|...+.|+..++...+... .+.+++.+
T Consensus 726 ~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~L 805 (1133)
T KOG1943|consen 726 LTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETL 805 (1133)
T ss_pred hcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 7777 7889988888888872 233343333322 2222211 247788889999999988766322 24555555
Q ss_pred HHHHHHhhcCC----CHHHHHHHHHHHHHHHhcCC
Q 000049 2393 YSVLKDLVYHD----DDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2393 ~~~L~~~l~~~----~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+.+-..|. ...||++|..++..+...++
T Consensus 806 L~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 806 LNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 55555444443 24699999999988876655
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=2.4e-09 Score=146.71 Aligned_cols=467 Identities=16% Similarity=0.187 Sum_probs=315.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
....+.+.+.++ +...|..+..++..+...-+ ..+.-++..+.+-+.++++.+|-.|..++..+. +++-...
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455566654 78888777776666654333 245567888888999999999988877777664 5666788
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2629)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+..++.|+++.|+.+|+.++..+ +.-.+ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 89999999999999999999999999998888765432 688888999999999999999999988 21111 234
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
..+++.+.+.+.++++..+ ..++.+.. +.. ...... ..+++.+...+.+.++.+...+..++..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5666666666677877665 45555432 111 112222 46778888888777788888888777765431
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh
Q 000049 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2629)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~ 1692 (2629)
.+....+++.+..++.++++.+|..+..++..++....+... . ....+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 126778899999999999999999999999999876522222 1 11223345544456678777776666654 34
Q ss_pred HHHhHhHHHHHhhcC-CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000049 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2629)
Q Consensus 1693 ~l~~llp~l~~~l~~-~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~ 1771 (2629)
....+++.+.+.+.+ .+..+|..++..++.++..++..+..|++.++.. +....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~l----l~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKL----LEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHH----HHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHh----hhhccccccchHHHHHHHHhhcChhh
Confidence 556778888888744 4788999999999999998877665555444444 34344445444444444443332111
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~ 1851 (2629)
+. ..+..++.
T Consensus 412 --------------------~~--------------------------------------------------~~l~~L~~ 421 (526)
T PF01602_consen 412 --------------------RE--------------------------------------------------KILKKLIE 421 (526)
T ss_dssp --------------------HH--------------------------------------------------HHHHHHHH
T ss_pred --------------------hH--------------------------------------------------HHHHHHHH
Confidence 00 01111111
Q ss_pred hcc-CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHh
Q 000049 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2629)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~ 1929 (2629)
... -....++..++.++|.+....+. .. ..+.++..+...+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 111 12345677777788777654433 11 56677777777787778889999999999999887653 5678888888
Q ss_pred hhcC--CCChhHHHHHHHHHH
Q 000049 1930 RGLK--DPSASRRQGVCIGLS 1948 (2629)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~aL~ 1948 (2629)
.... +.++++|+.++.-+.
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHH
Confidence 8777 789999999887554
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=2.2e-09 Score=147.17 Aligned_cols=478 Identities=15% Similarity=0.151 Sum_probs=322.6
Q ss_pred ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1332 ~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
|.+.......++..+. +++...|+.+...+..+...-+.... -+++.+.+-+.++ |+..|-.|+.+++.++ .
T Consensus 37 G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~---l~~n~l~kdl~~~-n~~~~~lAL~~l~~i~---~ 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLI---LIINSLQKDLNSP-NPYIRGLALRTLSNIR---T 108 (526)
T ss_dssp T---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHH---HHHHHHHHHHCSS-SHHHHHHHHHHHHHH----S
T ss_pred CCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHH---HHHHHHHHhhcCC-CHHHHHHHHhhhhhhc---c
Confidence 4444555555555555 66788898888888877764433222 3667777778876 7899988888777766 2
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh-hHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~-ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
......++|.+.+++.|+++.||+.|..++..+... .++.+.. ++|.+.+.+.+.++.++.+|+.++..+ ...+
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 244567888899999999999999999999998876 3444444 799999999999999999999999888 4444
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccc
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~ 1567 (2629)
+.....++.++..+.+.+.+.+|.++....+.+..++..-. ... ..+++.+...+.+.+..+. +|+..+... .+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l--~~ 260 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL--SP 260 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh--hc
Confidence 44345567778888888899999999888888887764321 122 4577777777765555555 566655421 11
Q ss_pred cCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
..+.+..+++.+.+.+.++++++|..+.+.+..++... .+.+......+..+..++++.+|..+...+..++
T Consensus 261 --~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 261 --SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 12256788999999999999999999999999887642 1222222223333444888999999999998887
Q ss_pred hhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhh
Q 000049 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2629)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~ 1727 (2629)
.. .....+++.|...+.+..+...|..++..++.++..... ..+.+++.+++.+...+..+...+...+..+....
T Consensus 333 ~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 333 NE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred cc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 63 346678888888885443344788888899988887744 34667777888888777888888888888777654
Q ss_pred ccchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhh-chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh
Q 000049 1728 GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2629)
Q Consensus 1728 g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~-~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~ 1805 (2629)
++.. ..++..+...+.+ .++.++..++..++........ .....++..+.+...+++..+|...+.++..+...
T Consensus 409 ~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 409 PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 4422 2345555655554 4456666666666655444332 13445666676666777778888888877777643
Q ss_pred hcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc--CccHHHHHHHHHHHHHH
Q 000049 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVWKTI 1871 (2629)
Q Consensus 1806 ~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~--D~~~~VR~aA~~~l~~l 1871 (2629)
.+. . +..+.++..+..... +.+.+||+.|...|.-+
T Consensus 485 ~~~--------------~----------------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 485 NPE--------------N----------------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp SCS--------------T----------------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred CCc--------------h----------------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 210 0 011123333333333 77899999999888644
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.36 E-value=9.9e-09 Score=138.36 Aligned_cols=433 Identities=14% Similarity=0.121 Sum_probs=286.4
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHH
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN 2153 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~ 2153 (2629)
-.++.+.+-+.++++.+|..++.++..+- ..+-+..+++.+.+.+.|.++.||..|+.++..++...+..+.. ..
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~ 179 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QD 179 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cc
Confidence 45677888889999999999888876552 23456778888899999999999999999999998766533211 24
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc--ccccCC--CCcccchh
Q 000049 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP--ILIPGF--CLPKALQP 2229 (2629)
Q Consensus 2154 il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~--~~l~g~--~l~k~l~~ 2229 (2629)
+++.|..+++|.|+.|..+|..+|..+....+.. +......+++.+....+. ..|.+.. ..+... ........
T Consensus 180 ~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~P~~~~e~~~ 256 (746)
T PTZ00429 180 FKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPEC--NEWGQLYILELLAAQRPSDKESAET 256 (746)
T ss_pred hHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5666777889999999999999999997655432 222233333333322111 1122211 001110 00122334
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2629)
++..+...+.+.++.+...|+.++-.+....++..++..+..+..|++.++. .+++++..++..+..++.+.+..+.+
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P~lf~~ 334 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQYIVCKNIHALLVIFPNLLRT 334 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHHCHHHHHH
Confidence 6666777777888888888888888776554434455555667788888754 36789999999999888876644333
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH
Q 000049 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2629)
Q Consensus 2310 ~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2629)
-...|.-..+|++. +|......|-.++. ..++..++.+|...+.+.|.+.+..++.|++.+..+. +...
T Consensus 335 ----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-----~~~a 403 (746)
T PTZ00429 335 ----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-----DSVA 403 (746)
T ss_pred ----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-----hHHH
Confidence 24556566678765 89988888887754 4578899999999888888999999999999998764 3456
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc---CCCCchhhHhHHHHHHHHHhhCCccccC
Q 000049 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAARHGSVLVFATFLRHNPSAISM 2466 (2629)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~p~~~~~ 2466 (2629)
..+++.|.+.+.+..+ +...+...+..+.+..|... ++..+.... .-.+...+. ++..++.+..+.+-+
T Consensus 404 ~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKa----aiiWILGEy~~~I~~ 475 (746)
T PTZ00429 404 PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKV----SLLWMLGEYCDFIEN 475 (746)
T ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHH----HHHHHHHhhHhhHhh
Confidence 7888888888776544 33445677777777777532 233333221 111222232 333344444433311
Q ss_pred ChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHH
Q 000049 2467 SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL--HDDSSEVRRRALSALKSVA 2544 (2629)
Q Consensus 2467 ~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l--~~~~~~vr~~al~~l~~~a 2544 (2629)
...++..+.....++.+.+|-+.+.+..++...... .....+..++..+ .++++|+|.-|..-.+-+.
T Consensus 476 ---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 476 ---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred ---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHc
Confidence 234555555666677889999999999998776421 2344555566432 4688899999987666554
Q ss_pred h
Q 000049 2545 K 2545 (2629)
Q Consensus 2545 ~ 2545 (2629)
.
T Consensus 546 ~ 546 (746)
T PTZ00429 546 K 546 (746)
T ss_pred C
Confidence 3
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.25 E-value=2.3e-07 Score=125.37 Aligned_cols=492 Identities=12% Similarity=0.074 Sum_probs=307.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCc-chhhHHH
Q 000049 1226 ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDK 1304 (2629)
Q Consensus 1226 ~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~-l~~i~~~ 1304 (2629)
.+++...|..++.-++..+ ..|.+ +..+++-+-+.+... +-.+|.-+...+...+ ..+|. .--.+..
T Consensus 42 ~s~~~~~kk~alKkvIa~m-t~G~D-vS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaINt 109 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANM-TMGRD-VSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVNT 109 (746)
T ss_pred HCCCHHHHHHHHHHHHHHH-HCCCC-chHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHHH
Confidence 3445554444444333322 24544 344555444455432 2345654444433332 33444 3345788
Q ss_pred HHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHH
Q 000049 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384 (2629)
Q Consensus 1305 L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~ 1384 (2629)
+.+-+.++++.+|..+.++++.+. ..+-.+.++..+...+ .+.+.-+|+.|+.|+..+.+..+ +.+....+.+.|.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~ 185 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLV 185 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHH
Confidence 899999999999999988887653 1111233333344444 44567899999999999987544 3332335778888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHHH
Q 000049 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLPS 1462 (2629)
Q Consensus 1385 ~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp~ 1462 (2629)
+++.++ |+.+.-.|+.+|..+.+..++.+. .....+..++..+.+-++.-+-...+.+ ....+ ......++..
T Consensus 186 ~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 186 ELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTR 260 (746)
T ss_pred HHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHH
Confidence 888876 899999999999998876654332 2344556666666655555554444443 22211 2234677888
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHhhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
+...|.+.+.-+..+++.++..+.... +......+..+.+.++.+ ..+++++|-.+.+.+..+....+ ..+...+..
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~ 338 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDS 338 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHh
Confidence 888888888888888888887776432 333333344444555555 45678999999999988876432 233445666
Q ss_pred HHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhh
Q 000049 1542 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~l 1620 (2629)
+.-..+||.. ++ ..++.+... .++.....++..|..+..+.+.+.++.+..++|.++..+. ...+.+
T Consensus 339 Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~c 406 (746)
T PTZ00429 339 FYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPDC 406 (746)
T ss_pred hhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHHH
Confidence 6666678865 55 567666431 2334556788888888889899999999999999987542 245667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--ccCCChHHHHHHHHHHHHHHHhhChhHHHhHh
Q 000049 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2629)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L--~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll 1698 (2629)
+..|..++.+... +...++..+..+.+...+.+ +++.|...+ ..-.+...|...++.+|+.+..... ...++
T Consensus 407 V~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L 480 (746)
T PTZ00429 407 ANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDII 480 (746)
T ss_pred HHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHH
Confidence 7788888876544 34467788888877665432 455555433 1222344566667778888765432 24455
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhc-C-CCChhHHHHHHHHHH
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGH 1762 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L-~-d~~~~VR~~al~al~ 1762 (2629)
..++....+.+..||-..+.+...+....+.+. ...+..+++.+ . +++.+||+.|.--.+
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM----EPQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 455555566788899888888777766655433 33444455433 3 466799998865444
No 35
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.7e-06 Score=113.17 Aligned_cols=474 Identities=14% Similarity=0.161 Sum_probs=272.1
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHH-HHHHH--------HHHhhcC
Q 000049 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAE--------DIWDRYG 1125 (2629)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~a~--------~~w~~~~ 1125 (2629)
..+++.+.+.+++.+|+..|++||++|.+.... |.... ..+-+...|..+.+ |..|. +.|....
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv~--~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFVS--SLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHHH--HHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 346788899999999999999999999876522 22222 23334555555554 44432 3588662
Q ss_pred -----CCCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000049 1126 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2629)
Q Consensus 1126 -----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2629)
+.++++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ +. ...+-
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s~------~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----SQ------DANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----Cc------chhhH
Confidence 223333 3 67888888889999999998887765 4788888888777765421 21 11344
Q ss_pred hHHHHHHHHhhhhcC--C----CChh----HHHHHHHh---hhcCCCcHHHHH---HHHHHHHHHHHh------hCccch
Q 000049 1195 QGIALALHSAADVLR--T----KDLP----VIMTFLIS---RALADTNADVRG---RMLNAGIMIIDK------HGRDNV 1252 (2629)
Q Consensus 1195 ~~~~~~l~~l~~~~~--~----~~~~----~i~~~li~---~~l~d~~~~Vr~---~~~~a~~~~i~~------~g~~~~ 1252 (2629)
.++..++..+++..+ . +.+. .+++.+.+ +.+.+.+..... ..+..+...+-. ...+.+
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 677778888876432 1 1121 22333322 334444333222 222222222111 123344
Q ss_pred hhhHHHHHHHhcccCCChh--hhhh---------HHHHHHHHHHHHHhhhc-cCCCc--------------chhhHHHHH
Q 000049 1253 SLLFPIFENYLNKKASDEE--KYDL---------VREGVVIFTGALAKHLA-KDDPK--------------VHAVVDKLL 1306 (2629)
Q Consensus 1253 ~~Ll~~~~~~l~~~~~~~~--~~~~---------vr~~~v~~~~~La~~l~-~~~~~--------------l~~i~~~L~ 1306 (2629)
..-|.+|-..++.+-+.+. .+.. .+.=+...+.++-..+. +.... .+.|.+.++
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655433221 1111 22223443444333332 21111 122222222
Q ss_pred hhc---CC---CcHHHHHHHHHhhhhhH------hhhccchHHHHHH-HHHHhhc---------C--------------C
Q 000049 1307 DVL---NT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLMK---------S--------------D 1350 (2629)
Q Consensus 1307 ~~L---~~---~~~~Vq~~~~~~L~~l~------~~~~~~~~~ll~~-ll~~L~~---------~--------------~ 1350 (2629)
+.+ .. -++.|-.-+..-+...+ +.++.....++.. ++..+.- . +
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 222 11 12222221111111111 1111111111111 1111110 0 1
Q ss_pred CHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhcc--CchhHHH-H
Q 000049 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVI-Q 1420 (2629)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~Al~al~~La~~~~~--~~~~~v~-~ 1420 (2629)
-+..+.+|...+-.+++..|.+.+. ++++++.+.+. +.++++..+||+.+++++++.+.+ .+...+. -
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 1234557888888999999988886 78888887765 234789999999999999987764 2333343 3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCc---hhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2629)
++++++..+.++.-..|..|+..+..+. ..++... ....+......|. +.+-.+|..|..+|..+....+ ..++
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6788888999999999999998888887 4555553 3667777777777 7778999999999999888655 4488
Q ss_pred hhccchHHHHhhhhcCCCHHHHHHHHHHH-HHHhhhcCc--hhH-HhHHHHHHhccC
Q 000049 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMGLT 1547 (2629)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~lvp~Ll~~l~ 1547 (2629)
+++|.++..++.+.++.+.+.-....+.+ +.+++.+.. .++ +.+...+++.+.
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999887666555444433 345544431 122 555556666655
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2e-09 Score=134.48 Aligned_cols=342 Identities=18% Similarity=0.166 Sum_probs=250.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
.+.++..+...++..+-.+..+++.+.+.-... ....++|.+++.|. +.+...+..|.++|..+|.+..++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 444555555455555666666776665533211 12578999999997 456888999999999999887766544
Q ss_pred hc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-hH--HhHHHHHHhccCCCCh--hHHHHHHHHHhcccccc
Q 000049 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~lvp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~ 1568 (2629)
.. .+.+|.+..++.+++..|++.|.+||++++..-.. + ++ ...++.|+..+..++. ..|.+..+|.. ++..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcC
Confidence 33 46789999999999999999999999999865321 1 11 4567778888776654 55666666653 2222
Q ss_pred C-Ch---hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1569 V-DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1569 ~-~~---~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
. .. .....++|.|.+.+.+.+.++...|+.++..+... .++.+.- .-..++|.+..+|.++.+.|+..|.+++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 2 22 34567899999999999999999999999998763 2222211 1235789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHHH
Q 000049 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1644 ~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
|.++.+.+.. .-...+|.|...+........|..++..++.+..+.... .+ ..++|.++..++..+..+|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9987644332 124667888777775555557889999999998854332 11 578999999999999999999
Q ss_pred HHHHHHHhhhhhccchHhhHHh--HHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
+..+++.++.....+-..|+-+ +++++...|.-.+..+-..+++++..+.+.
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9999999887665666677643 899999999777777767788888877653
No 37
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.2e-05 Score=99.85 Aligned_cols=308 Identities=15% Similarity=0.180 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhCCC--hhhhHh-hhHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hccc-ccHHHHHHHHHhhcC-CCCh
Q 000049 2053 NAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VIDE-EGVESLVSELLKGVG-DNQA 2126 (2629)
Q Consensus 2053 ~~~aL~~La~~~g~~--l~~~l~-~il~~Ll~~L~~~~~~vr~~a~~al~~l~~-~~~~-~~~~~ll~~Ll~~l~-d~~~ 2126 (2629)
+.+++|+|++..-.. +...+. -+++.++-.+.++..-+|..+++.++.+.. .+.. ..+...+....+.+. |.+.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 456777777654321 222222 234455556678888899999999998873 3333 447778888888887 7888
Q ss_pred hHHHHHHHHHHHHHHhch---hhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhh
Q 000049 2127 SIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2629)
Q Consensus 2127 ~vR~~a~~~L~~l~~~~~---~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~ 2203 (2629)
.||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+..... +..++...+.+..|.-...
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fseElsPfA~eL-------- 586 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSEELSPFAVEL-------- 586 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHhhchhHHHH--------
Confidence 999999999999987654 44899999999999999876554433322 2222222211111100000
Q ss_pred hhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc---CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHh
Q 000049 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS---GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII 2280 (2629)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~---~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l 2280 (2629)
.+.+...|.+.+.+ .++..-..+..++|
T Consensus 587 -----------------------~q~La~~F~k~l~~~~~~~~~~ddk~iaA~G-------------------------- 617 (1010)
T KOG1991|consen 587 -----------------------CQNLAETFLKVLQTSEDEDESDDDKAIAASG-------------------------- 617 (1010)
T ss_pred -----------------------HHHHHHHHHHHHhccCCCCccchHHHHHHHH--------------------------
Confidence 01111122222221 11112222222222
Q ss_pred cCCCCHhHHHHHHHHHHHHHHhc---CCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----ccCChhHHHHH
Q 000049 2281 GDRFPWQVKSAILSTLSIIIRKG---GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA----LSTRVDPLVGD 2353 (2629)
Q Consensus 2281 ~~~~~~~vk~~al~~L~~L~~~~---~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~----~~~~~~~ll~~ 2353 (2629)
.|.++..++..+ +..++..-|.+.+.+-..|...-.++-..+..-...+.. +.|..=.+++.
T Consensus 618 -----------iL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~l 686 (1010)
T KOG1991|consen 618 -----------ILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLEL 686 (1010)
T ss_pred -----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHH
Confidence 222222222222 111122223333333333333322222222222222211 23444456677
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHhhcCCCc--ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHH
Q 000049 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLAD 2429 (2629)
Q Consensus 2354 Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2629)
+++.+++....--..++-+|...+...+... .+.|...+++.+...+.+. ++.-...|++.++.+...+.. .+++
T Consensus 687 i~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq 765 (1010)
T KOG1991|consen 687 ILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQ 765 (1010)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhh
Confidence 7777766555666778888888877655433 2467888889988888874 555667788999998887765 4444
Q ss_pred HHH
Q 000049 2430 LLQ 2432 (2629)
Q Consensus 2430 ~l~ 2432 (2629)
.++
T Consensus 766 ~ip 768 (1010)
T KOG1991|consen 766 YIP 768 (1010)
T ss_pred HhH
Confidence 444
No 38
>PRK09687 putative lyase; Provisional
Probab=99.22 E-value=7.9e-10 Score=134.21 Aligned_cols=253 Identities=17% Similarity=0.150 Sum_probs=164.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
.+.|...|.+++..||..++..|..+ + .+..++.+.. +.++++..+|..|+.+|+.+-.. .... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~--~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~--~~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----G--GQDVFRLAIE-LCSSKNPIERDIGADILSQLGMA--KRCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----C--cchHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC--ccch--HHHHH
Confidence 46677778888888998888877543 2 2333333333 44566678899999888875321 1111 14566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2629)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444478888888888888753221 11234566666777888888888888887654 2245677
Q ss_pred HHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
.|+..+.+++|.+|+.++..||.+.+.. +.+++.|...++|.++.||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 7888888888888888888888773322 3566777778888888888888888877643 133444
Q ss_pred HHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhH
Q 000049 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2629)
|++.+.++ + +|..++.++|.+.. +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig~------------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELGD------------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcCC------------HhHH
Confidence 44444433 2 34456666666532 2356
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000049 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1622 ~~L~~~L~-d~~~~VR~~A~~aL~ 1644 (2629)
|.|..++. ++++.|+..+..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777775 677777777776654
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=1.3e-09 Score=154.96 Aligned_cols=273 Identities=22% Similarity=0.256 Sum_probs=201.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
.++.|+..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..++..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999998887763 245778888999999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
.+.+...|+|+++.||.+|+.+|+.+.. .+ ...++..+.|++..+| .++..|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2456677889999999999999998752 11 1346677889998888 677777641 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll 1659 (2629)
.+...+.|.++.+|..++..++.+... . ....+.+..++.|+++.||..|+.+|+.+.. . ....
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778999999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHH
Q 000049 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2629)
Q Consensus 1660 ~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii 1739 (2629)
+.+...+.++ +..+|..++.+|+.+.. ++.++.+...+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAAA-------DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4466666654 45688888888876431 234567778888999999999999888751 11 3456
Q ss_pred HHHHhhcCCCChhHHHHHHHHHH
Q 000049 1740 PAILDGLADENESVRDAALGAGH 1762 (2629)
Q Consensus 1740 ~~ll~~L~d~~~~VR~~al~al~ 1762 (2629)
+.+...+.|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 77778888999999998888765
No 40
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=1.6e-09 Score=131.48 Aligned_cols=252 Identities=12% Similarity=0.034 Sum_probs=189.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
-.+.++..+.|++..||..+..++..+. -..+++.+...+.+++..+|..++.+|+.+...... ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 3556667789999999999998887763 255677777778889999999999999998642110 2356
Q ss_pred HHHHhhh-hcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1501 VPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1501 vp~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
+|.|..+ ++|+++.||..|+.+||.++..-..+ ....++.+...+.|++..+| .+...|+.. . -...+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------~---~~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVI------N---DEAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhcc------C---CHHHH
Confidence 6777766 78999999999999999986432212 24566677788889988898 456666431 1 13467
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
+.|...+.|.++.+|..|...+|.+.. + -+...+.|...+.|+++.||..|+.+||.+.. +..
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~a 224 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRV 224 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhH
Confidence 899999999999999999999998722 1 23578889999999999999999999988532 477
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhc-CCChhhHHHHHHHHH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~a~~~l~ 1721 (2629)
+|.|++.+.++. .|..++.+++++.. +..+|.+.+.+. +++..++..+...+.
T Consensus 225 v~~Li~~L~~~~---~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGT---VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCc---hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888888887654 56667777776543 256777777775 678888887776654
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=3.5e-09 Score=150.62 Aligned_cols=274 Identities=21% Similarity=0.228 Sum_probs=191.9
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHH
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2629)
.++.|++.|.|+++.||..+++.|..+- .+..++.|...| +.++..+|..|+.+|..+....+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 4567888899999999999999887642 244556666555 556789999999999887543221 1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000049 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2629)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2629)
+.+...+.++ ++.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 2444556665 89999999888877541 11 1245667899999999999888876511 2
Q ss_pred HHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
+.+...+.++++.+|..++..|+.+.... +..++.|..+++|+++.||.+|..+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 34566788899999999999998875432 12256777888999999999999999888642 12234
Q ss_pred HHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh
Q 000049 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2629)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2629)
.+...+.|+++.+| .|+..|.... -...++.|...+.|+++.||..+..+|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 56677778877777 4666664310 1234577777778888888888888887641 11 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 56667777788888888888887753
No 42
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.09 E-value=7.2e-06 Score=106.05 Aligned_cols=560 Identities=18% Similarity=0.197 Sum_probs=290.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHH--------HHHHhhcCC--
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGY-- 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a--------~~~w~~~~~-- 1126 (2629)
+.+-.+|.|.+|+|.++|.+|+.+|....+.. ..-..+.++-. .++..-..|++| ..+|..+..
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-----~f~~aL~~va~-~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTE-----GFGVALAEVAA-NKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccch-----HHHHHHHHHHh-CcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 56788999999999999999999999876431 12222333222 223333344443 467875431
Q ss_pred CCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000049 1127 DFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2629)
Q Consensus 1127 ~~~~----~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2629)
.-+. + + ..|+..+.+++..+|.+++.++..++. .||+.|++++..+..+... .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 1111 1 2 567788889999999999999998865 7999999999998876431 11235567
Q ss_pred HHHHHHHhhhhcCCCC--------hhHHHHHHHhhhcCCCcHH-----HHHHHHHHHHHHHHhhCc---cchh----hhH
Q 000049 1197 IALALHSAADVLRTKD--------LPVIMTFLISRALADTNAD-----VRGRMLNAGIMIIDKHGR---DNVS----LLF 1256 (2629)
Q Consensus 1197 ~~~~l~~l~~~~~~~~--------~~~i~~~li~~~l~d~~~~-----Vr~~~~~a~~~~i~~~g~---~~~~----~Ll 1256 (2629)
+.+++..+......++ .+.+...+ ......+.. .|..........+..++. ++.+ .++
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f--~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l 225 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF--ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQIL 225 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhh--hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7777777765432111 12211111 111111221 222223334444444443 2222 233
Q ss_pred H----HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhHHHHHhhcC-------------C-------
Q 000049 1257 P----IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLN-------------T------- 1311 (2629)
Q Consensus 1257 ~----~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~~~L~~~L~-------------~------- 1311 (2629)
+ .|+..++..+. ++-..|......+..+...++.. .+.+...++-..+.+. +
T Consensus 226 ~~~~~~l~h~l~~~~g---~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~ 302 (1005)
T KOG2274|consen 226 NQFMDILEHPLQRNDG---SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDAR 302 (1005)
T ss_pred HHHHHHHhhhhccccc---chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccc
Confidence 3 33333333222 22233433334444444433221 2222222111111110 0
Q ss_pred -CcHHHHHHHHHh-------hhhh------HhhhccchHHHHHHH--HHHhh----------------cCC-CHHHHHHH
Q 000049 1312 -PSEAVQRAVSSC-------LSPL------MQSMQDEAPTLVSRL--LDQLM----------------KSD-KYGERRGA 1358 (2629)
Q Consensus 1312 -~~~~Vq~~~~~~-------L~~l------~~~~~~~~~~ll~~l--l~~L~----------------~~~-~~~~R~~A 1358 (2629)
.++.-+..+-.| +..+ ...+....++++..+ ..++. +.+ .+..|..+
T Consensus 303 ~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~ 382 (1005)
T KOG2274|consen 303 YDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISV 382 (1005)
T ss_pred cCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhH
Confidence 011111111111 1111 111111112222111 11111 112 23566666
Q ss_pred HHHHHHHHhhhCcchhhhhcHHHH----HHH-----HhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc
Q 000049 1359 AFGLAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2629)
Q Consensus 1359 a~~L~~l~~~lg~~~l~~~~i~~~----L~~-----~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2629)
--.+-.++..+|...+. .+.+. +.. ...+...|...++.+.+.+... .++....+...+...+...+
T Consensus 383 rd~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 383 RDLLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhc
Confidence 66667777777765553 23333 211 1223334666655555444443 33223344444444555555
Q ss_pred CC-CCHHHHHHHHHHHHHHHHh--hcHHhHHhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1430 SD-QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1430 ~D-~~~~VR~aa~~al~~i~~~--l~~~~v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
.. ..|..--.+.-++..+.+. ..+.-...++...+..+.. .....|.+++..+... |.++.+.+.+|.|+..+.
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~--~~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGY--CKVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhc--cCceeccccchHHHHHHH
Confidence 42 2233322454455555444 3333345555555555543 3445666666665443 467778888999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhH---------HhHHHHHHhccCCCChh--HHHHHHHHHhccccccCChhhh
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEI---------ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i---------~~lvp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
++..+.+.+|-..-.++|...++.- |++ ..++..+.+..+||.-. +..+++.+... .....+..
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~d--pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~ 611 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLD--PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQ 611 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccC--hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchH
Confidence 9999999999999999999988763 322 23344455666777321 12444444431 11223455
Q ss_pred hhHHHHHHHhhcCCC----HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh
Q 000049 1575 ALLVPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~----~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
...+|.+..-+.... ...-..+.+++..+.+. +.+.--........|.+.++.- ..+.++-..+.+|+..++..
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 667788877776544 45666678888877775 2222223344556666666644 34567778888999888875
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.7e-08 Score=124.59 Aligned_cols=346 Identities=18% Similarity=0.164 Sum_probs=238.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
.++..+. +++...+..+...+..+..... ...+...++++.+.+++....++..|..|..++..++.+-...-.-+
T Consensus 70 ~~~~~~~-S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALY-SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHh-CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3344443 3345556667777766664322 22222347888999999766579999999999999998655422223
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhhccCCh-hhhHHHHHHHHHHHhhC-c
Q 000049 1418 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-P 1490 (2629)
Q Consensus 1418 v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w-~~r~~a~~~L~~la~~~-p 1490 (2629)
+. ..+|.+..++..++..||+.|..|++.++..-+.. .+ ..++++|+..+..... ...+.+.++|..++.+. |
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 32 57899999999999999999999999998755443 22 4677888888776553 67888999999999864 4
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCC
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2629)
.---.....++|.|..++.+.+++|..-||+|+..+...- ++.++ .++
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq----------------------~vi--------- 276 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQ----------------------MVI--------- 276 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHH----------------------HHH---------
Confidence 4434456788999999999999999999999999997532 12111 111
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc-cchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~ 1648 (2629)
-..++|.+...|...+..++..|..++||+... +.... .-.-...+|.+..++. .+...+|+.|+..++.+..
T Consensus 277 ---~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 277 ---DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred ---HccchHHHHHHHcCCCcccccHHHhhccceeec--cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 123566666777777777777788888886653 21110 0112346788888887 6667799999999999987
Q ss_pred hhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHHHH
Q 000049 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTL 1719 (2629)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~~~ 1719 (2629)
.-.+. .-..++|.|+..+.+.+ ...|..++.+++.+..+...+.. ..+++.+...+.-.+..+-..++.+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 33322 12478999999998765 56889999999988776555432 3456677766655565555555555
Q ss_pred HHHhhh
Q 000049 1720 FKYLPR 1725 (2629)
Q Consensus 1720 l~~L~~ 1725 (2629)
+..+-.
T Consensus 431 l~nil~ 436 (514)
T KOG0166|consen 431 LENILK 436 (514)
T ss_pred HHHHHH
Confidence 555544
No 44
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=8.7e-06 Score=104.13 Aligned_cols=654 Identities=17% Similarity=0.187 Sum_probs=329.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHH------HHHHHhhcCCC---
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD--- 1127 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------a~~~w~~~~~~--- 1127 (2629)
+.+...|..+++||+++|..+|++|++.... +++ .+.++..+-....|.....++. .++.|......
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y--~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNY--PLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCc--hHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 4678889999999999999999999886532 222 2445555444444433332222 23568754422
Q ss_pred CC----CCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH--
Q 000049 1128 FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL-- 1199 (2629)
Q Consensus 1128 ~~----~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~-- 1199 (2629)
+. +.+ ..++...-+....++....+++.-+.+ .+|+.|++++..|...+. . ....+-.|+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls----~------~D~~~~~gVL~ta 150 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLS----S------GDFNVINGVLVTA 150 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcc----c------cchHHHHHHHHHH
Confidence 22 223 445566666778999999999988764 678888888888876532 0 11122233333
Q ss_pred --HHHHhhhhcCCCCh-hHH---HH-------HHHhhh--c---CCCcHHHHHHHHHHHHHHHHhh-----------Ccc
Q 000049 1200 --ALHSAADVLRTKDL-PVI---MT-------FLISRA--L---ADTNADVRGRMLNAGIMIIDKH-----------GRD 1250 (2629)
Q Consensus 1200 --~l~~l~~~~~~~~~-~~i---~~-------~li~~~--l---~d~~~~Vr~~~~~a~~~~i~~~-----------g~~ 1250 (2629)
.|+..-..+..+.+ .++ ++ -|+.+. + .+.+...-........-+.+.+ =.+
T Consensus 151 hsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 151 HSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh
Confidence 33333222322221 111 11 111111 0 1112221111111111111111 124
Q ss_pred chhhhHHHHHHHhcccCC----C---hhhhhhHHHHHHHHHHHHHhhhccC-CCcchhhHHHHHhhcCCCcHHHHH--HH
Q 000049 1251 NVSLLFPIFENYLNKKAS----D---EEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQR--AV 1320 (2629)
Q Consensus 1251 ~~~~Ll~~~~~~l~~~~~----~---~~~~~~vr~~~v~~~~~La~~l~~~-~~~l~~i~~~L~~~L~~~~~~Vq~--~~ 1320 (2629)
+++..|+.|-+++....+ + ...-+.+|...++.+.--+..++.. ++.+...+......+.+-++..+. .+
T Consensus 231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv 310 (960)
T KOG1992|consen 231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV 310 (960)
T ss_pred hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence 566777777777753111 1 1123445555555555544444322 444555555455555443333322 22
Q ss_pred HHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh--C-------cchhhhhcHHHHHHHHhcCCC
Q 000049 1321 SSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF--G-------ISSLKKYGIAATLREGLADRN 1391 (2629)
Q Consensus 1321 ~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l--g-------~~~l~~~~i~~~L~~~l~~~~ 1391 (2629)
++++.-|....+. ..+..-...-..++.++... | ++.+-..+-++++..-++..+
T Consensus 311 s~Al~FLt~V~~r----------------~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsD 374 (960)
T KOG1992|consen 311 SKALQFLTSVSRR----------------PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSD 374 (960)
T ss_pred HHHHHHHHHHHhh----------------hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCC
Confidence 2222222111110 01110000111111222111 1 111112245667777776654
Q ss_pred CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-cCCCCHHHH--HHHHHHHHHHHHh----------------hc
Q 000049 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVR--EAAECAARAMMSQ----------------LS 1452 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR--~aa~~al~~i~~~----------------l~ 1452 (2629)
-..+|.+|+..+..|++.+...+.+.+...+..++.. ..+|..+.+ +.+......++.. +.
T Consensus 375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~ 454 (960)
T KOG1992|consen 375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV 454 (960)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence 3456668999899999887655666666666666653 345544333 3333322222221 11
Q ss_pred HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
+.....++|.|.+.-..+.+-.|.+++..+..+=...+ ..++-.++|.+...|......|-..|+.++..+-....+
T Consensus 455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 22336677776653223333334444443322211111 233556788888899988899999999999987765443
Q ss_pred ------------hhHHhHHHHHHhccCCCCh----hHHHHHHHHHhccccccC----ChhhhhhHHHHHHHhhcCC-CHH
Q 000049 1533 ------------PEIASLVPTLLMGLTDPND----HTKYSLDILLQTTFVNTV----DAPSLALLVPIVHRGLRER-SAE 1591 (2629)
Q Consensus 1533 ------------~~i~~lvp~Ll~~l~d~~~----~~r~al~~L~~~~~~~~~----~~~~l~~i~p~L~~~L~d~-~~~ 1591 (2629)
|.+..++..|.+.++-|.. +.-+|+...+.. .... .+..+..+..++....+.+ ++.
T Consensus 532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i--~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~ 609 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI--LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQ 609 (960)
T ss_pred ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh--CHHhhhhhhhHHHHHHHHHHHHHhcCCCCch
Confidence 2334455556666655543 222343333221 1111 1122222223333333333 455
Q ss_pred HHHHHHHHHHHHhhhcCC--CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC
Q 000049 1592 TKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~ 1669 (2629)
--....+.++.+.....+ +..+..+-..++|.+...+.+...+.--.++..++.+++..+...-+.+.+ ++..+.++
T Consensus 610 fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~-l~~~lLsp 688 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSP-LFPPLLSP 688 (960)
T ss_pred hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHhcCH
Confidence 566667777666554332 334566778899999999988777788888999999988766532222222 33333333
Q ss_pred CChHHHHHHHHHHHHHHH---hhChh------HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc-chHhhHHhHH
Q 000049 1670 NSNVERSGAAQGLSEVLA---ALGTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVL 1739 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~---~~g~~------~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii 1739 (2629)
.- ..|.+-.-++-.+.. ..|.. .+..++..+.+.+.++ ..-..++.++..+...+.. ...||+..+.
T Consensus 689 ~l-W~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk--a~Dh~GF~LLn~i~~~~~~~~~~py~k~i~ 765 (960)
T KOG1992|consen 689 NL-WKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK--ANDHHGFYLLNTIIESIPPNELAPYMKQIF 765 (960)
T ss_pred HH-HhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc--ccchhHHHHHHHHHhcCCHhhhhHHHHHHH
Confidence 32 245442222222222 22332 2234444444444332 1223466677776666653 4678999999
Q ss_pred HHHHhhcCCC
Q 000049 1740 PAILDGLADE 1749 (2629)
Q Consensus 1740 ~~ll~~L~d~ 1749 (2629)
..+++.++..
T Consensus 766 ~llf~Rlqns 775 (960)
T KOG1992|consen 766 GLLFQRLQNS 775 (960)
T ss_pred HHHHHHHhcc
Confidence 9999988754
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.9e-05 Score=100.56 Aligned_cols=518 Identities=20% Similarity=0.195 Sum_probs=296.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHH
Q 000049 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT 1969 (2629)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~ 1969 (2629)
|..+|.+.....+..|..-+-.++.+ |.+ ...++|.+.+...+.+.+++.-+..-|-.-.+.-....+ --+..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~-G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK-GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHH
Confidence 33445665555555554433333322 222 456777777777788999988776555543332211111 12566
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC
Q 000049 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049 (2629)
Q Consensus 1970 l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~ 2049 (2629)
+.+.|.|+++.+|..|.+.+..+-- .-+.|
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv-------p~IaP------------------------------------------- 142 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV-------PMIAP------------------------------------------- 142 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch-------hhHHH-------------------------------------------
Confidence 7889999999999988877765421 11111
Q ss_pred chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHH
Q 000049 2050 SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIR 2129 (2629)
Q Consensus 2050 ~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR 2129 (2629)
-++-++-+...|..+.||..+..|+-++- +.+.+.-..+...+-..+.|.++.|-
T Consensus 143 ------------------------I~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 143 ------------------------IMLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred ------------------------HHHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHHHHHHHHHHHhcCCCCcch
Confidence 11122233446777888888888887763 33555555777777778889999999
Q ss_pred HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhh
Q 000049 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2629)
Q Consensus 2130 ~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 2209 (2629)
-+|+.++..+|-..- +.+..-.+.++.++-|-++=-+.-....|.+.++..-.+- ..+. ..+. +....
T Consensus 198 gsAv~AF~evCPerl----dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P--~~~~---~~~e---~n~~~ 265 (968)
T KOG1060|consen 198 GSAVMAFEEVCPERL----DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP--TVVD---SSLE---DNGRS 265 (968)
T ss_pred hHHHHHHHHhchhHH----HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc--cccc---cccc---cCccc
Confidence 999998888875321 2222334556666655444333334455555544321110 0000 0000 00000
Q ss_pred hhcCCcccccCCCCcccchhhHHHHHHH----HhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCC
Q 000049 2210 KKKGGPILIPGFCLPKALQPLLPIFLQG----LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285 (2629)
Q Consensus 2210 ~~~~~~~~l~g~~l~k~l~~ilp~ll~~----L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2629)
........+...|-...+-+..|++. |.+.++.+-.+++.+.--++-. .-+..|..+|+|.+.+ +
T Consensus 266 --~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs--~ 334 (968)
T KOG1060|consen 266 --CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRS--N 334 (968)
T ss_pred --ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhc--C
Confidence 00000011111221223333444433 3345666666666665554421 1345678899999875 6
Q ss_pred HhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHH
Q 000049 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 2365 (2629)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~v 2365 (2629)
.+++...|..+..+..+-+..|.||+..+ .-+-.|+ ..++.-=...|..|+. ..++..++.++..-++++|..+
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsF----fv~ssDp-~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSF----FVRSSDP-TQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRSF 408 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhce----EeecCCH-HHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchhH
Confidence 88999999999999998888887775421 1111222 3344444555555543 4678899999999999988878
Q ss_pred HHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCc-h
Q 000049 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW-A 2444 (2629)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~-~ 2444 (2629)
-..+.+|++.+....+. ..+.+++-|..++.+.++.|-..+...|..|.+..|.++. .++.++...+.+-.. .
T Consensus 409 aa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ 482 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPA 482 (968)
T ss_pred HHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhh
Confidence 88888999888765443 4577888888888888999999999999999998887542 233333221111110 0
Q ss_pred hhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhh
Q 000049 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA 2524 (2629)
Q Consensus 2445 ~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~ 2524 (2629)
.|. ..++- +..+-+. .+....++...+.+...++++.++-....-..++....... .+.+...+-.+..
T Consensus 483 ARA---~IiWL-ige~~e~--vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~----~kll~~Yv~~L~~- 551 (968)
T KOG1060|consen 483 ARA---GIIWL-IGEYCEI--VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ----TKLLVQYVFELAR- 551 (968)
T ss_pred hhc---eeeee-ehhhhhh--cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh----HHHHHHHHHHHhc-
Confidence 111 11111 1111111 13345678888888888888888888877777766553211 1222222222222
Q ss_pred cCCCCHHHHHHH
Q 000049 2525 LHDDSSEVRRRA 2536 (2629)
Q Consensus 2525 l~~~~~~vr~~a 2536 (2629)
.|.+.|+|.-+
T Consensus 552 -yD~sYDiRDRa 562 (968)
T KOG1060|consen 552 -YDLSYDIRDRA 562 (968)
T ss_pred -cCCCcchhHHH
Confidence 37777776654
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.81 E-value=1.2e-05 Score=106.94 Aligned_cols=301 Identities=16% Similarity=0.163 Sum_probs=196.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHH
Q 000049 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2629)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp 1502 (2629)
++.++.+.+...-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.......... =.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7777877766666788899999999887776 57888999999999999999999999999887644322211 267899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHH
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2629)
.+..++.|++..|.+.|.++|..+++.- +.++.+++. ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~----------------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDS----------------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCc----------------------------------chHHHHH
Confidence 9999999999999999999999998642 222222100 0123333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CCCCc--hh
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~-g~~~~--~~ 1657 (2629)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+.+.-+|..+...++.++..- |-+++ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 344444556777777777777653 1 12333333 37888888888999999999999999999821 11122 35
Q ss_pred hHHHHHHHhccCCChHHHH------HHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc
Q 000049 1658 LVSWLLDALKSDNSNVERS------GAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~R~------~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g 1728 (2629)
+++.+...+.+..... |. +.....+.+...-+.. .++.++..+.+...+.++..+..|+.+++.++....
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6777777775543332 22 2222334444331122 235566666677778899999999999999986542
Q ss_pred c-ch-----HhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000049 1729 V-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1729 ~-~f-----~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv 1765 (2629)
+ .+ .+-+..++..+.........++|..++.++..++
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 2 11 1223334444444444444556666666655554
No 47
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00064 Score=87.77 Aligned_cols=668 Identities=15% Similarity=0.212 Sum_probs=313.8
Q ss_pred CCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccc------cCChhhhhhHHHH
Q 000049 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVN------TVDAPSLALLVPI 1580 (2629)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~------~~~~~~l~~i~p~ 1580 (2629)
++|.||+.|-++|.+.... ..+.-.++..+-+.-.|+ .+|- +++..++..... .+.+..-..+-..
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~--~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~iksl 92 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDP--QIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSL 92 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcCh--hHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHH
Confidence 4678888888888877643 122233333332222222 3331 122222211111 1222233344455
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c
Q 000049 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F 1655 (2629)
Q Consensus 1581 L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-----~ 1655 (2629)
+...+-+....++....++++-++.. |+-.-+|.++|-+...++..+..+-......-.++.+....++ |
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~~-----DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGKR-----DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 55555555677888888888877652 4555688999999999987666665555555555666554331 1
Q ss_pred hh--------------hHHHHHHHhccCCChHHHH----HHHHHHHHHHHhhC----hhHH----HhHhHHHHHhhcCC-
Q 000049 1656 PD--------------LVSWLLDALKSDNSNVERS----GAAQGLSEVLAALG----TVYF----EHILPDIIRNCSHQ- 1708 (2629)
Q Consensus 1656 ~~--------------ll~~Ll~~L~~~~~~~~R~----~a~~~L~~i~~~~g----~~~l----~~llp~l~~~l~~~- 1708 (2629)
.+ ++...++..+.......-. +...-+..+.-.+. ++++ +..|+.+.+.+...
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence 11 1111112222111111100 11111112211221 2233 45667776665522
Q ss_pred ------------ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChh-----HHHHHHHHHHHHHHH--hh
Q 000049 1709 ------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES-----VRDAALGAGHVLVEH--YA 1769 (2629)
Q Consensus 1709 ------------~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~-----VR~~al~al~~iv~~--~~ 1769 (2629)
-..+|...+..+.-.+....+.|.||+++++...+..+..-..+ ....|+..+..+++. |.
T Consensus 248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~ 327 (960)
T KOG1992|consen 248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA 327 (960)
T ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 23567788888888888889999999999998888887654333 334455555554432 11
Q ss_pred hc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCC--cccHHHHHHHHHHHhchhhHHHHH
Q 000049 1770 TT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE--GASTEAHGRAIIEVLGRDKRNEVL 1846 (2629)
Q Consensus 1770 ~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede--~~~~~~~~~~l~~~Lg~e~~~~vl 1846 (2629)
.- .-+.++..+.+.. .++.+. .. ++|+| +++..++ +...+
T Consensus 328 ~~F~~~~vl~~i~e~V-------------vlpN~~-----------lR-~eDeElFED~pleY---iRRDl--------- 370 (960)
T KOG1992|consen 328 ELFEGENVLAQICEKV-------------VLPNLI-----------LR-EEDEELFEDNPLEY---IRRDL--------- 370 (960)
T ss_pred hhhcchHHHHHHHHhh-------------cccccc-----------cc-hhhHHHhccCHHHH---HHHhc---------
Confidence 00 0001111111111 011110 00 01100 0001111 00100
Q ss_pred HHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000049 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLPS 1923 (2629)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2629)
. -+|.+ .-|++|++.++.++.++......++..-++.++.... +.+|..+..+...+..+.-+.+.
T Consensus 371 E-----GsDvd-TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t----- 439 (960)
T KOG1992|consen 371 E-----GSDVD-TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQT----- 439 (960)
T ss_pred c-----cCCcc-hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcch-----
Confidence 0 13332 3578999999999998876666666665555554333 34566665565555544433211
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l-~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
.+.|+.. ..++ -.+.+|. ..++|.+...=....|-++..|.+-.-..-...|+...-
T Consensus 440 ---------------~~~Gvts-tn~l------vdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm 497 (960)
T KOG1992|consen 440 ---------------AKHGVTS-TNEL------VDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM 497 (960)
T ss_pred ---------------hhcceee-cccc------ccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH
Confidence 0111000 0000 0111222 334444443222445666666666555555566666666
Q ss_pred hhHHHHHHhccCcCch--hHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC-CChhhhHhhhHHHH
Q 000049 2003 EIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG-PGLNFHLGTILPAL 2079 (2629)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g-~~l~~~l~~il~~L 2079 (2629)
.++|.++..|+.+..- .+|..++..++..+... ++ ..+| ..+.||+..++..|
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~-----------------~~-------~if~~~~iap~~~~ll~nL 553 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS-----------------NA-------KIFGAEDIAPFVEILLTNL 553 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCc-----------------cc-------cccchhhcchHHHHHHHHH
Confidence 7788888888765422 23333444443322110 00 0112 34566677777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHHHHHHhch----hhh
Q 000049 2080 LSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIGYFYKNSK----LYL 2147 (2629)
Q Consensus 2080 l~~L~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l----~d-~~~~vR~~a~~~L~~l~~~~~----~~~ 2147 (2629)
++.+..+....-+..++++..++...++ ++...++..|.+.+ ++ .+|.--..-.+.+|.++..++ ..+
T Consensus 554 f~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v 633 (960)
T KOG1992|consen 554 FKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV 633 (960)
T ss_pred HHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH
Confidence 7666543333333344444444432211 22233333332222 22 223333344444555444332 122
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCc----ccc-----
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP----ILI----- 2218 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~----~~l----- 2218 (2629)
+..-..+++.+...+..+-.+....+...++.++.......-+.+.+ +...+.+.+ ..++.|.. ..+
T Consensus 634 s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~-l~~~lLsp~---lW~r~gNipalvrLl~aflk 709 (960)
T KOG1992|consen 634 SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSP-LFPPLLSPN---LWKRSGNIPALVRLLQAFLK 709 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHhcCHH---HHhhcCCcHHHHHHHHHHHh
Confidence 33333333333333433333444455555665555443311111111 111111100 00001100 000
Q ss_pred cCCC-C--cccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHh
Q 000049 2219 PGFC-L--PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 2287 (2629)
Q Consensus 2219 ~g~~-l--~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~ 2287 (2629)
.|.+ . .+.+.+++.+|...+.+...+ ..+...+..++...++..+.||+.+|.+-|.+-++..-...
T Consensus 710 ~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~k 779 (960)
T KOG1992|consen 710 TGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEK 779 (960)
T ss_pred cCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHH
Confidence 0000 0 133566777776666554333 46788899999999988899999999999998887653333
No 48
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.75 E-value=0.0002 Score=95.73 Aligned_cols=177 Identities=16% Similarity=0.079 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcC
Q 000049 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2629)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~ 2323 (2629)
.|+.|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 47778888999999988 5555555666555665555432222 4445566666666667777777 5567778888999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhc
Q 000049 2324 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2629)
Q Consensus 2324 d~~~~vR~~Aa~aLg~l~~~~--~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2629)
..+..+|.+|+.|+|.+.... ......+..++..+.+.+.-+|.....-+.+++...+.....+|..-++.+|...+.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 223455566666666655445544444444555444444447899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC
Q 000049 2402 HDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+.+|.++.+++..+....|
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999987765
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.74 E-value=2.9e-07 Score=110.81 Aligned_cols=200 Identities=25% Similarity=0.340 Sum_probs=139.9
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2629)
+.+.++....+.+|..|..+++-+..++..-. ..+ ..+.+.+.+ ..++..+.....|
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~-------------~~~-----~~~~~~~~l-----~~~~~~i~~~l~d 64 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNA-------------PED-----FPPDFVECL-----RQLLDAIIKQLSD 64 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----------------------HHHHHHH-----H---HHHHH-S-H
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCC-------------ccc-----cHHHHHHHH-----HHhHHHHHHHHhh
Confidence 33444444577899999999999988875310 000 001122221 2344556666788
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhH-HHHHhhhcCC
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLKD 1934 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~d 1934 (2629)
....|-..|+.+++.++...+..+.++++.++|.+++.+.+++..+|..|..+|..++..++ +.+.+ .+.+..+..+
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKS 142 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999999999999999999999999999998876 22444 6777888899
Q ss_pred CChhHHHHHHHHHHHHHHhhc--hhhHHH--hHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1935 PSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~~li~~~~--~~~l~~--~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
+++.+|..++..+..++...+ ...+.. .++.+.+.+.+.+.|++++||+.|..+|..++..+|..+
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999999999988877 333332 358899999999999999999999999999998888753
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.73 E-value=2.9e-07 Score=110.78 Aligned_cols=183 Identities=26% Similarity=0.327 Sum_probs=131.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHH-------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH
Q 000049 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA-------ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2629)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~-------~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~ 1419 (2629)
.++.+|..|..|...|..++.+...... ...++ ..+...+.+. ....-..|+.++..++..++..|.||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 3556899999999999999987621111 11222 3344444443 3445567899999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc---hhhhh-
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~~- 1495 (2629)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+..++.+++|.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999998776 1112337777788999999999999999999888766 34433
Q ss_pred -hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1496 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1496 -~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.++.+++.+..++.|++++||++|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877663
No 51
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00037 Score=88.43 Aligned_cols=252 Identities=13% Similarity=0.173 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc
Q 000049 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2629)
...+-+-++..++...+.||..|...+-.++-..+ +.++..+|.+.+.|++++..+..+|+..+..+|...|+..
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny---- 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY---- 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc----
Confidence 34677888899999999999999888877766553 4678899999999999999999999999999999888754
Q ss_pred cchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC-chhH-HhHHHHHHhccCCCChhH--HHHHHHHHhcccccc--CC
Q 000049 1498 PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVNT--VD 1570 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~lvp~Ll~~l~d~~~~~--r~al~~L~~~~~~~~--~~ 1570 (2629)
-.+-|.+++++.++ +..|- ++-|.-|+...+ .|.+ ..++|.+.+.+.+..... =+|+.++++...... ..
T Consensus 217 L~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 217 LQLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred ccccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 24567777777653 33332 333344443222 3544 678888888776543321 167777765432222 33
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
..+....+..|.-.+.|.+++.|.-++-+++.++. +.|+.+..+. ..+..+|.|.++.+|-.|...+-.++.
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs-- 365 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS-- 365 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh--
Confidence 45666777788888899999999999999999987 3555554444 455678899999999999988876654
Q ss_pred CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000049 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2629)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~ 1686 (2629)
++.+.+++..|+..+...+...-|......+-++|
T Consensus 366 -kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 366 -KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred -hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 45677888888877765544334444433333333
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.1e-05 Score=99.46 Aligned_cols=390 Identities=17% Similarity=0.213 Sum_probs=230.7
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~i 2154 (2629)
+.+.+-+-|+..+.-+...|..+++.++ +.+..+.+.|++.+.+++.++.+|.-|+.|...+....+.-.+ .+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hh
Confidence 4455555666777767667777776653 4567788888888888888999999999988888877654433 34
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------ccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccch
Q 000049 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2629)
Q Consensus 2155 l~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~ 2228 (2629)
+.....++.+.+..|.-+...-+..+++..+. +..+.++..+++.....- .....+.|.+ .
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y--------speydv~gi~-----d 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY--------SPEYDVHGIS-----D 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCccCccCCC-----c
Confidence 45556667778888877777777777765432 233444444444332210 0001233332 3
Q ss_pred hhHHH----HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHhc
Q 000049 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKG 2303 (2629)
Q Consensus 2229 ~ilp~----ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~~ 2303 (2629)
|++.+ ++.-|..++++....-...|+.++..+... +..=..|.-..++.+-+ +.+...|..+..+|+.++..-
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 44443 234455666666666677778877665421 11111222222222211 234556666666666555432
Q ss_pred CCCcc---------------CchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHH
Q 000049 2304 GIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368 (2629)
Q Consensus 2304 ~~~l~---------------p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2629)
+..++ .-+.+-..+++.||.|++..+|.+|...+-.|+. ..++..++.+|+.-+...|++.+..
T Consensus 326 d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 326 DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDEDFKAD 404 (866)
T ss_pred ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 22111 1224456789999999999999999988777654 4678899999999987777777765
Q ss_pred HHHHHHHH------------------HhhcCCCcChHHHHHHHHHHHHhhcC---------------------CCHHHHH
Q 000049 2369 ILTALKGV------------------LKHAGKSVSSAVKIRVYSVLKDLVYH---------------------DDDHVRV 2409 (2629)
Q Consensus 2369 ~l~AL~~v------------------i~~~g~~~~~~~~~~i~~~L~~~l~~---------------------~~~~vr~ 2409 (2629)
...-+.++ +..+|.-+.......++.++.+.+.+ +++....
T Consensus 405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q 484 (866)
T KOG1062|consen 405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ 484 (866)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 55555544 44445544444455555555443221 2344556
Q ss_pred HHHHHHHHHHhcC------------ChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHH
Q 000049 2410 SAASILGIMSQCM------------EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRL 2477 (2629)
Q Consensus 2410 ~aa~~Lg~L~~~~------------~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l 2477 (2629)
.+..|||.-+..+ .++++...+.+++....+. ...+..++.++..+....+.. .+++-..+
T Consensus 485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~ri~~lI 557 (866)
T KOG1062|consen 485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SERIKQLI 557 (866)
T ss_pred HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHHHHHHH
Confidence 7888999877221 2235556666665543333 444444444444444333322 45677777
Q ss_pred HhhhcCCChhHHHhHHH
Q 000049 2478 KSSLKDEKFPLREASTK 2494 (2629)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~ 2494 (2629)
.+...+-+..+++.|++
T Consensus 558 ~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 558 SSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHhcccccHHHHHHHHH
Confidence 77777778888777765
No 53
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.68 E-value=0.00069 Score=90.86 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=105.4
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChh-HHHHHH
Q 000049 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS-IRRSSA 2133 (2629)
Q Consensus 2055 ~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~-vR~~a~ 2133 (2629)
..+.+++-.+|..+.+ +-+.+|.++......+..+|..+..|++.+......+....+++.++..+++.+.- .|+.+.
T Consensus 798 ~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~ 876 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGAD 876 (1549)
T ss_pred HHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHH
Confidence 3445555556777777 77788999999999999999999999998877655566677777777778765554 455666
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000049 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2629)
Q Consensus 2134 ~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2629)
..++.++......+.+|.+-++..|+..++|..+.||.++-.++..++...+-
T Consensus 877 e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 877 ELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 67777777777788899999999999999999999999999999999887653
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.67 E-value=3.9e-07 Score=104.13 Aligned_cols=267 Identities=17% Similarity=0.167 Sum_probs=185.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCch
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~ 1415 (2629)
.+|.+.+.|-+....-....|+++|..+++|... +.+...+.+|.+.+++.+. +..+|+.++.++|.++.- .....
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGD-S~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGD-SEGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCC-chhHH
Confidence 4566666664433335567899999999987543 2222336678888888776 688999999999998732 22355
Q ss_pred hHHHH--HHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1416 PYVIQ--MLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1416 ~~v~~--ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
+|+-+ .+..++..+.... ..+|.++|.....+-..-++. .+.+.+|.|.+.+...+..+-..||+++..+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 66653 5666666655443 467888876655554433332 357889999999888888999999999999887
Q ss_pred hCchhhhhhcc-chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhccCCCChhHH-HHHHHHH
Q 000049 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2629)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2629)
+..+.+...+. .+.+.|+++|.+++..|+.-|.+++|+++..-.. ..+ -..++.+...+++|.+.+| +++.++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 65554444333 5677899999999999999999999988754221 111 3456777777888888887 6776665
Q ss_pred hccc--cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1562 QTTF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1562 ~~~~--~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+. ...+..-.-..++|.|...+...+..+|+.||.++.+....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4211 11122222346788888888888889999999999987654
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.66 E-value=9e-07 Score=101.29 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=218.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hcHH--hH--HhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQ--GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~~~--~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
-+|.+.+.+...+-.-.-.+..-.+.+.+. .++. .+ ..++|.+++.+++. .--.+..|.++|..++.+...+..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 346666555444333333333333433331 1111 11 45788888888543 334566889999999987666543
Q ss_pred hhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhccCCCCh---hHHHHHHHHHhcccc
Q 000049 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPND---HTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~---~~r~al~~L~~~~~~ 1566 (2629)
-.. ..-+|.+.++|.+++..||+.+++|||+++..-.. .++ ...+..++..+..... .+|.+-.+|... .-
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl-cR 230 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL-CR 230 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh-hC
Confidence 222 35689999999999999999999999999854221 111 1233334444332222 245555555431 01
Q ss_pred cc---CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1567 NT---VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1567 ~~---~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
+. -+-......+|+|.+.+...++++-..||.+++-+..... +.+...+ ..+++.|.++|.+++..++.-|.+.
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~--E~i~avld~g~~~RLvElLs~~sa~iqtPalR~ 308 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN--EKIQAVLDVGIPGRLVELLSHESAKIQTPALRS 308 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH--HHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence 11 1224556789999999999999999999999998876321 2222222 2467789999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHH
Q 000049 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1643 L~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2629)
+|.++..-... .-...++.+...|.+.. ...|..+|..++.+-.+-... .. ..++|.++..+...+-.+|.
T Consensus 309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99998754432 11244555544455443 468999999999886654333 11 46889999999988999999
Q ss_pred HHHHHHHHhhhhhc--cchHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1715 GYLTLFKYLPRSLG--VQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g--~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~ 1766 (2629)
.++.++.......- ++...|+- .++.++..+|.-.+..+-+.+++++..+++
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 99998887654321 24445543 367777777765555566666777766654
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.0003 Score=89.98 Aligned_cols=469 Identities=16% Similarity=0.167 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCCh
Q 000049 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~ 1937 (2629)
...+++--.+++-++.+ +.. ..++|.+++...+.+.++|....--|-+.++.-+.-.+ --+..+++.|.|+++
T Consensus 50 ~~KleAmKRIia~iA~G--~dv----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKG--KDV----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHHHhcC--CcH----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHHHHHhhhcCCcH
Confidence 34445444455544443 333 44555667777888988887766555444443222211 124678899999999
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc
Q 000049 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT 2017 (2629)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~ 2017 (2629)
-+|..+...|+.+- +.-..+-++-.+.++..|+.+.||..|+.|+-+++. .++...++++..
T Consensus 123 LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~---------- 184 (968)
T KOG1060|consen 123 LIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEV---------- 184 (968)
T ss_pred HHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHH----------
Confidence 99988888777541 111224445566778899999999999999999875 333222232222
Q ss_pred hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000049 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2629)
Q Consensus 2018 ~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2629)
++.++..++..+ ...|+-+.-+++.+.+. .+..=...+-+.+.+-++--+..++..
T Consensus 185 -------I~~LLaD~splV----------------vgsAv~AF~evCPerld-LIHknyrklC~ll~dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 185 -------IKKLLADRSPLV----------------VGSAVMAFEEVCPERLD-LIHKNYRKLCRLLPDVDEWGQVVLINM 240 (968)
T ss_pred -------HHHHhcCCCCcc----------------hhHHHHHHHHhchhHHH-HhhHHHHHHHhhccchhhhhHHHHHHH
Confidence 222222111111 11222222222222110 111112222222222111111111222
Q ss_pred HHHHHhhc-ccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH-HHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q 000049 2098 AETVTLVI-DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYF-YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2629)
Q Consensus 2098 l~~l~~~~-~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l-~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~ 2175 (2629)
+-..++.. .++. .+... + .++. .++..-... ....+....+-..-+++..-.++...++.|.-++..
T Consensus 241 L~RYAR~~l~~P~---~~~~~---~-e~n~----~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq 309 (968)
T KOG1060|consen 241 LTRYARHQLPDPT---VVDSS---L-EDNG----RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ 309 (968)
T ss_pred HHHHHHhcCCCcc---ccccc---c-ccCc----ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh
Confidence 11111110 0000 00000 0 0000 000000000 000111112223445555556666777777776666
Q ss_pred HHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000049 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGE 2255 (2629)
Q Consensus 2176 aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~ 2255 (2629)
++..+.... .. ..|...++. +..++.+++...+.+|+.
T Consensus 310 l~y~lAP~~---~~--------------------------------------~~i~kaLvr-LLrs~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 310 LFYHLAPKN---QV--------------------------------------TKIAKALVR-LLRSNREVQYVVLQNIAT 347 (968)
T ss_pred HHHhhCCHH---HH--------------------------------------HHHHHHHHH-HHhcCCcchhhhHHHHHH
Confidence 655553221 11 112223333 334566778888999999
Q ss_pred HHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHH
Q 000049 2256 LIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAAL 2335 (2629)
Q Consensus 2256 l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~ 2335 (2629)
++...+ .-|.||+..+. + ....+..+|..=++.|..|+... -++++.+-|.....+++..+-..|.+
T Consensus 348 ~s~~~~-~lF~P~lKsFf---v---~ssDp~~vk~lKleiLs~La~es------ni~~ILrE~q~YI~s~d~~faa~aV~ 414 (968)
T KOG1060|consen 348 ISIKRP-TLFEPHLKSFF---V---RSSDPTQVKILKLEILSNLANES------NISEILRELQTYIKSSDRSFAAAAVK 414 (968)
T ss_pred HHhcch-hhhhhhhhceE---e---ecCCHHHHHHHHHHHHHHHhhhc------cHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 998876 78899977652 1 22235678888888888887742 36778888888888887789999999
Q ss_pred HHHHHHhc-cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC-CHHHHHHHHH
Q 000049 2336 ALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD-DDHVRVSAAS 2413 (2629)
Q Consensus 2336 aLg~l~~~-~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~ 2413 (2629)
++|+.+.. ...-+..+..|+..+.+.+..|-..+.-.++.+++.- +.-...|+.-|...++.- -+..|.....
T Consensus 415 AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~-----p~~h~~ii~~La~lldti~vp~ARA~IiW 489 (968)
T KOG1060|consen 415 AIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD-----PAEHLEILFQLARLLDTILVPAARAGIIW 489 (968)
T ss_pred HHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHHhhhhhhhhhhceeee
Confidence 99998553 3445778899999998888888888888888888753 233344555555554332 3445555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhH
Q 000049 2414 ILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447 (2629)
Q Consensus 2414 ~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 2447 (2629)
.+|..+...|- -+-.+++.+.....+....++.
T Consensus 490 Lige~~e~vpr-i~PDVLR~laksFs~E~~evKl 522 (968)
T KOG1060|consen 490 LIGEYCEIVPR-IAPDVLRKLAKSFSDEGDEVKL 522 (968)
T ss_pred eehhhhhhcch-hchHHHHHHHHhhccccchhhH
Confidence 77777766552 2223444444444444444443
No 57
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.62 E-value=0.0089 Score=78.62 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=199.3
Q ss_pred hhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHhh--cccccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhc
Q 000049 2068 LNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNS 2143 (2629)
Q Consensus 2068 l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~l~~~--~~~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~ 2143 (2629)
...++..++..+...+. ...|.+-..+.+++..+..+ +..+-+..++...+..+ .+..+.+|..|+.++..+| .
T Consensus 443 ~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~ 520 (1005)
T KOG2274|consen 443 NDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--K 520 (1005)
T ss_pred hHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--C
Confidence 44455555555555553 34455555777888777665 23344666666666655 4566789999999888888 3
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC
Q 000049 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2629)
Q Consensus 2144 ~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l 2223 (2629)
..-+.+..|.++..|..+..+...+|.....++|+.+++-.++.-.
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a---------------------------------- 566 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA---------------------------------- 566 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh----------------------------------
Confidence 3456778899999999999999999999889999888765443110
Q ss_pred cccchhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 000049 2224 PKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSI 2298 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~--~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al~~L~~ 2298 (2629)
..-+.+.|.+..-+. +.+|.+-..+-.++-++++.. ....|+....++.++.+++.. -+......+++.|..
T Consensus 567 -s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 567 -SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred -hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence 000112333332222 224445555666677776643 567777788888888888743 246678889999999
Q ss_pred HHHhcCCCccC-chHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhc----------cCChh-HHHHHHHHhhhcCC--H
Q 000049 2299 IIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRVD-PLVGDLLSSLQVSD--A 2363 (2629)
Q Consensus 2299 L~~~~~~~l~p-~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~----------~~~~~-~ll~~Ll~~l~~~d--~ 2363 (2629)
+++..+..+.. ++.+..+.+.++.-++ +..+=..+..||..++.. .|+.. .++-..+..+-+++ .
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sd 723 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSD 723 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccch
Confidence 99988776543 4456788888886555 566677888999988543 12222 35555555654432 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhcCC
Q 000049 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
.....+-.-+..++.++|..+ .+..++|+..+..-+.. ....+-..-...+..|....+
T Consensus 724 s~a~~VG~lV~tLit~a~~el-~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 724 SAAAFVGPLVLTLITHASSEL-GPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred hHHHHHhHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCH
Confidence 223334445556777888777 44555555544444333 345555555566666665444
No 58
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.59 E-value=0.018 Score=86.03 Aligned_cols=150 Identities=23% Similarity=0.311 Sum_probs=89.6
Q ss_pred HHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhccch
Q 000049 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKLGERV 1920 (2629)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~----~~~~~R~~A~~~L~~lv~~~~~~~ 1920 (2629)
.+..++..+.|....++.++...++.++...|..+-+.+. ...+..++. ....+......-+..++.....-+
T Consensus 566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr---~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i 642 (2341)
T KOG0891|consen 566 LLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR---KTLLELLTELEFSGMARTKEESAKLLCELIISSPVLI 642 (2341)
T ss_pred hHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH---HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHH
Confidence 4445667788999999999999999988877754444443 333333332 222223333333333333222222
Q ss_pred hhhHH---HHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHh
Q 000049 1921 LPSII---PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA 1996 (2629)
Q Consensus 1921 l~~ll---p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~ 1996 (2629)
.+++- -.+...+.+++..+-..+...+++++...| ..+..+.+.+++.+.+.+.|. ...-|.++.++++.+...-
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 33332 333334556666666677788888766544 445556667777777777765 4456777788888887766
Q ss_pred Ch
Q 000049 1997 GM 1998 (2629)
Q Consensus 1997 g~ 1998 (2629)
|.
T Consensus 722 ~~ 723 (2341)
T KOG0891|consen 722 GY 723 (2341)
T ss_pred ce
Confidence 54
No 59
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=7.4e-06 Score=94.94 Aligned_cols=364 Identities=18% Similarity=0.129 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-H--hhHHHHHhhhccC
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-K--LVLPSLLKGLEDK 1470 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~--~ilp~Ll~~L~~~ 1470 (2629)
.+| .+..+|..+.+.-- ...-.+....++..+...++.+.-++..+++.++-.....++ . .=+..++..+..+
T Consensus 63 lqr-saalafAeitek~v---r~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd 138 (550)
T KOG4224|consen 63 LQR-SAALAFAEITEKGV---RRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD 138 (550)
T ss_pred cch-HHHHHHHHHHHHHH---HHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC
Confidence 344 45556666554221 122234555666677778888999999888877655444432 1 1123344444445
Q ss_pred ChhhhHHHHHHHHHHHhhCchh-hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH---HhHHHHHHhcc
Q 000049 1471 AWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGL 1546 (2629)
Q Consensus 1471 ~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i---~~lvp~Ll~~l 1546 (2629)
.-.++..++.++..++...... -..+...+.| +..+-+..+.+||..+..+|-++.....+... ..-+|.|...+
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARSGALEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhccchhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 5556666777777776542222 1222333433 55666778899999999999999876655432 56678888888
Q ss_pred CCCChhHH-HHHHHHHhc---cccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHH
Q 000049 1547 TDPNDHTK-YSLDILLQT---TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622 (2629)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~ 1622 (2629)
...+..++ +|..++... .-...+-...-+.++|.+...+.+.+++++-.|.-++++++.- ......-.-..-+|
T Consensus 218 ~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 218 KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLP 295 (550)
T ss_pred ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCch
Confidence 77776676 454444321 0011112233456899999999999999999999999998863 21111111223567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-H
Q 000049 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-E 1695 (2629)
Q Consensus 1623 ~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~ 1695 (2629)
.+.++++++.-..-.....||..+.-.-+.+. -..++..|...|.-.++......+...+-.++...... .. .
T Consensus 296 ~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 296 LLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred HHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 88888888866666667777876655433331 13455566666665554545666666666665533222 11 3
Q ss_pred hHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2629)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~ 1766 (2629)
.-+|.+...+.+..-.+|+....++..++-. +.+..++- .++|.+.....++.++||..+..|+..+..
T Consensus 376 gAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred CchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 4578888888888888888888788777643 33334433 488999999999999999999888877654
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00018 Score=92.71 Aligned_cols=307 Identities=16% Similarity=0.180 Sum_probs=194.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv 1501 (2629)
...+-+-+..++..|.-.|..+++.+ .+++-...+.|.+.+.+...+..+|+-|+.+...+....|+... .++
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f~ 181 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HFV 181 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----Hhh
Confidence 33344445556666665555555554 45566677788887888888888888888888888888877664 345
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+...+.|.|.|+-|--++..-+..+++.-.+ .+++.+++.|...+.+-... .+....-++.+.+|.++.-+=
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~------~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNS------GYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccCccCCCchHHHHHHH
Confidence 5666778888888877777777777764222 24566666666554321000 000012245567788876666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
.+.+.+...+.+....-.++++.+++.....+... -.-+...+...+. .+++..|..|+.+||.+...-....----
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~G--nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYva 333 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAG--NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVA 333 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeee
Confidence 67777777777888888888888887633222211 1123344444443 57789999999999998763322210111
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
+..|+..++.+.....|. -..+++++++++..+|..++.+.-.+... ..+..+
T Consensus 334 Ln~L~r~V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~m 386 (866)
T KOG1062|consen 334 LNMLLRVVQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNE------SNVRVM 386 (866)
T ss_pred hhhHHhhhcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHH
Confidence 344555555554333333 34678888999999999999888777652 456677
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~iv~~~~~ 1770 (2629)
+..++.+|...+++.+......+..+.+.|++
T Consensus 387 v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 387 VKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 88888888777788887766665555555543
No 61
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.022 Score=80.61 Aligned_cols=462 Identities=18% Similarity=0.171 Sum_probs=257.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
..++..+..+++..|..+.++++.++...+.. +...+...+...+.+ .++-.|.+...++|.+-+..|.-.-.+++.+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 34455566788888999999999999888765 445555555554554 5778899999999999888776555677788
Q ss_pred HHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCcCch-hHHHHHHHHHHhhhccCcCccc
Q 000049 1966 LIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPHI 2040 (2629)
Q Consensus 1966 ll~~l~~~L~d~d-~~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ilp~L 2040 (2629)
-+..+....+|+. |.|+..+..++..+.+..|+-. +...+..++..|-+.... ..-..++ ++.+.+
T Consensus 959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~-------~R~~~~-- 1029 (2067)
T KOG1822|consen 959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCY-------NRCFNG-- 1029 (2067)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhh-------cccccc--
Confidence 7888888888885 5999999999998888777633 233333334444332211 0000000 111110
Q ss_pred chhhhcCCCchhHHHHHHHHHHHhCCChhhhH---------hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccH
Q 000049 2041 LPKLVHLPLSAFNAHALGALAEVAGPGLNFHL---------GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGV 2110 (2629)
Q Consensus 2041 ip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l---------~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~ 2110 (2629)
-...+.+..+.|+.+.+.. ...+-...=.+..+++.++..++.|+.++-..... -+.
T Consensus 1030 -------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~ 1096 (2067)
T KOG1822|consen 1030 -------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL 1096 (2067)
T ss_pred -------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH
Confidence 0122344444443333222 11111111123456777888888888877543322 347
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHH--------------------HHHHHHHHHhc-CCChhH
Q 000049 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP--------------------NMISTLIVLLS-DSDSTT 2169 (2629)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~--------------------~il~~Ll~ll~-d~d~~V 2169 (2629)
..++..+...+....--.|.++..++..+....-.....|.. .+-..++.+++ ..|...
T Consensus 1097 ~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l 1176 (2067)
T KOG1822|consen 1097 DSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKL 1176 (2067)
T ss_pred HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHH
Confidence 788888888887776667777777776665443222221111 11223444554 446667
Q ss_pred HHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC------cccchhhHHHHH------HH
Q 000049 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL------PKALQPLLPIFL------QG 2237 (2629)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l------~k~l~~ilp~ll------~~ 2237 (2629)
+......|.++......+.+...+....+.+....+.. ....+.|... ..+-...++.-. ++
T Consensus 1177 ~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s------~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p 1250 (2067)
T KOG1822|consen 1177 LKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDFS------ASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKP 1250 (2067)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc------ccccccccccccchhhcccchhhHHhhhccccccCC
Confidence 77777777776555443333322222223332111100 0001111100 011111222211 12
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhh-------------------hhHHHHHHh---cCCCCHhHHHHHHHH
Q 000049 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRII---GDRFPWQVKSAILST 2295 (2629)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-------------------i~~~Li~~l---~~~~~~~vk~~al~~ 2295 (2629)
+.++-+..|..++.|+-+++..+. ....|.+. -..-|+|+. .-..+...|.+-++.
T Consensus 1251 ~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~ 1328 (2067)
T KOG1822|consen 1251 LVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLES 1328 (2067)
T ss_pred ccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHH
Confidence 223356778888888887776554 22222211 112244432 122367889999999
Q ss_pred HHHHHHhcCCCcc----------CchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhcc-----CChhHHHHHHHHhhh
Q 000049 2296 LSIIIRKGGIALK----------PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSLQ 2359 (2629)
Q Consensus 2296 L~~L~~~~~~~l~----------p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~-----~~~~~ll~~Ll~~l~ 2359 (2629)
|..++.+.-..-. .|.+|+...+...+.+. +++|-..|.......+..+ ..+..+..-|+..+.
T Consensus 1329 L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl~ 1408 (2067)
T KOG1822|consen 1329 LEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSLD 1408 (2067)
T ss_pred HHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhc
Confidence 9998886533322 35566666666676665 8899999988888775432 234445555565554
Q ss_pred cCC---------------HHHHHHHHHHHHHHHhh
Q 000049 2360 VSD---------------AGIREAILTALKGVLKH 2379 (2629)
Q Consensus 2360 ~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2629)
... .-.+-+++.|+.++...
T Consensus 1409 k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1409 KSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred ccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 321 22355778999988753
No 62
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.56 E-value=2.6e-05 Score=103.88 Aligned_cols=351 Identities=22% Similarity=0.248 Sum_probs=230.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-H
Q 000049 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2629)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-p 2312 (2629)
+.+.+.+.+.++-..++.+|..+.+...+..+ .+++.+.|.+.+.. .++.||..++..++.+.+.-........ +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777778888899999887665554 45556667788876 4789999999998887764332111111 4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHH-----HHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChH
Q 000049 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2629)
Q Consensus 2313 ~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~l-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2629)
.+.+.++.++.|++..|...|+.+|..+....+..+.+ +..|...+..++..+|..+++.+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998766656555 6667777766678889888888777765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHH-----HHHHHHHhhc---CCCC-chh--hHhHHHHHH
Q 000049 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-----DLLQELLNLA---SSPS-WAA--RHGSVLVFA 2454 (2629)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~-----~~l~~ll~~~---~~~~-~~~--~~~~~~~l~ 2454 (2629)
+.. .+++.+...+.++|.-++.++.++++.|+. .+. ... .+++.+.+.+ ..+. ... .-+.+..++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 222 377888888888888899999999999998 332 211 1222332222 1111 100 011112333
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcC---CCCchhhHHHHHHHHhhcCCCCHH
Q 000049 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSE 2531 (2629)
Q Consensus 2455 ~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~ 2531 (2629)
.+....|..+.. ....++..+.+...+.++..+..|+.++|.+-.....+. ..........+..+.........+
T Consensus 275 ~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 275 NLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 333335555432 345788888888899999999999999997643321100 000124456777777778888999
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhh-------------cCCcchhhhhHHHHHHHHhccccCchhH
Q 000049 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAECL-------------KDGSTPVRLAAERCAVHAFQLTRGSEYI 2594 (2629)
Q Consensus 2532 vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~-------------~~~~~~vk~aae~a~~~l~~~~~~~~~~ 2594 (2629)
+|..++.++..+....++.-.+.+-.+...+|... +-+=..+|.|+.+-+.++..-+-+-..+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999976555422223334455555553 3333447888888888777766554433
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.6e-06 Score=97.46 Aligned_cols=301 Identities=14% Similarity=0.092 Sum_probs=188.2
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i 1535 (2629)
....+++-.+++.+......+...+|.++-.. .+.+...+..+=+.+.+.+.| +.+||..+..|+.+++..-.++ .+
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 34445556677788888999999999887543 334445566666677777777 7789999999999998764432 12
Q ss_pred --HhHHHHHHhccCCCChhHH-HHHHHHHhccccccC-ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000049 1536 --ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV-DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2629)
Q Consensus 1536 --~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~-~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2629)
..-+..+.+.-...+..++ .+...|...+...+- ..-..+.-+|++...+...+..+|..++.++++++-.-...+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1223333443333333443 566665542111110 001123457888999999999999999999999875322223
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000049 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~ 1686 (2629)
.+..--|.++|.+..++.++++.++..|..+++.++..- +|. ..-+|.+++.++++... .-.....|+-.+.
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcc
Confidence 445556789999999999999999999999999988632 232 24467888888765433 2333334444443
Q ss_pred HhhChhHH---HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 1687 AALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAG 1761 (2629)
Q Consensus 1687 ~~~g~~~l---~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al 1761 (2629)
-.-+.+.+ ..++..+...+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 33232221 34555666666554 5558888888888888644332222222 2566666666676666665544443
Q ss_pred H
Q 000049 1762 H 1762 (2629)
Q Consensus 1762 ~ 1762 (2629)
.
T Consensus 401 a 401 (550)
T KOG4224|consen 401 A 401 (550)
T ss_pred H
Confidence 3
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.53 E-value=0.023 Score=78.75 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChh
Q 000049 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2629)
Q Consensus 1395 ~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2629)
.+..+-..+-+++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 33445555555554332 33333344555667778899999999999999887642221 1245555566778888999
Q ss_pred hhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhHHhHHHHHHhccCCCChh
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~~~ 1552 (2629)
+|.+|++++|.+.-+.|+...+++. .+.+-..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 9999999999998888777655544 445567899999999999999999876543 23345555566666666554
Q ss_pred HH
Q 000049 1553 TK 1554 (2629)
Q Consensus 1553 ~r 1554 (2629)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 44
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.50 E-value=5.4e-06 Score=109.74 Aligned_cols=275 Identities=18% Similarity=0.268 Sum_probs=172.0
Q ss_pred hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h------hHHhHHHHHHh
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P------EIASLVPTLLM 1544 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~------~i~~lvp~Ll~ 1544 (2629)
...|..|+++|..++.-... ...+..|+|-++.++.|+...||..|..+|..+...+++ | ..+-++|.|..
T Consensus 437 ~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred chhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 35677788888777643222 234688999999999999999999999999888765542 1 11334444444
Q ss_pred ccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHH
Q 000049 1545 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 1624 (2629)
Q Consensus 1545 ~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L 1624 (2629)
.+.|. ....+|..-+..++.++.... .|+. +...+
T Consensus 515 l~~d~--------------------------------------~~~~vRiayAsnla~LA~tA~------rFle-~~q~~ 549 (1431)
T KOG1240|consen 515 LLNDS--------------------------------------SAQIVRIAYASNLAQLAKTAY------RFLE-LTQEL 549 (1431)
T ss_pred hhccC--------------------------------------ccceehhhHHhhHHHHHHHHH------HHHH-HHHHH
Confidence 44431 223445444455555544211 0111 11111
Q ss_pred HHH--hcCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-HhHh
Q 000049 1625 KKV--LVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHIL 1698 (2629)
Q Consensus 1625 ~~~--L~d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-~~ll 1698 (2629)
... +++++.+ ...+..++.. +...+..+...|-.+.+..+|+...+.+..+|.-+|++.- +-++
T Consensus 550 ~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 550 RQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred HhcccccCcccc----------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 111 2333332 0111111111 2233444555555566566788888888888888888754 5577
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh--hhchhhh
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPL 1775 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~--~~~~i~~ 1775 (2629)
+.++..+++.+|.+|-+++..+..++-..|.. ... .++|.+.++|.|.++.|-..|+.++..+++.. ...++-.
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se---yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~ 696 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE---YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD 696 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH---HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 88888899999999988888888888878764 333 37888888999998888888888888887742 3334444
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
++..+.-.+-.+|-=+|.+++..+.....++
T Consensus 697 i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 697 ILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 5555555556666668888887777765543
No 66
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.015 Score=75.30 Aligned_cols=219 Identities=17% Similarity=0.217 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc-----CCCCHHHHHHHH-HHHHHHHHhhcHH-h-----HHhhHH
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAAE-CAARAMMSQLSAQ-G-----VKLVLP 1461 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l-----~D~~~~VR~aa~-~al~~i~~~l~~~-~-----v~~ilp 1461 (2629)
+.|-.|-..+-.+.+..+..+.|++..++..-..+. +|-+.-+++.|. .+.+..+..++.. . ...++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 566677777777777777777777766665555555 344455555554 3334333333332 1 244555
Q ss_pred HHHhhhccCChhh-hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC--chhHHh
Q 000049 1462 SLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIAS 1537 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~-r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~--~~~i~~ 1537 (2629)
.+- .+.++.|. |+-.+.++|..... ++....-+-+...++++++|. +.-||-++.+++....+... ...+.+
T Consensus 492 El~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 492 ELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred Hhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 544 23344443 55567788887752 111222355677788899998 66779999999998887543 112222
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
++|.+... +...+.. .+-++|......++.+...++. .+.||
T Consensus 568 ~lenlf~~-----------------------------------lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e--~I~P~ 610 (978)
T KOG1993|consen 568 YLENLFVL-----------------------------------LFKLLKAVEECDTKTSVLNLLSTLIERVSE--HIAPY 610 (978)
T ss_pred hHHHHHHH-----------------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--hhhHH
Confidence 22222211 1111110 1125566666677777665543 45677
Q ss_pred HhhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1617 IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1617 l~~ll~~L~~~L~--d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
...++..+-.+-. ...+-.|.+...++..++.++|.+
T Consensus 611 ~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 611 ASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 7777766655544 356789999999999999999976
No 67
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.46 E-value=0.022 Score=75.35 Aligned_cols=153 Identities=21% Similarity=0.216 Sum_probs=124.9
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC---
Q 000049 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME--- 2423 (2629)
Q Consensus 2347 ~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~--- 2423 (2629)
+-.++|.|+..+.+.+..+|...+.+|..|+.+.+....-+..+.++++|.+.+.-+|..+|..+-.+|..+....+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 34577888888887778899999999999999888776678899999999999999999999999999988765543
Q ss_pred hhHHHHHHHHHHhhcCCCC---chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHH
Q 000049 2424 DGQLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2629)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~---~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2629)
++++..+++.++..-.+++ ..+|..+..++..+.+.-|...+. .+.+.++..|...+.|.+.-+|+-|+.+-+.+-
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 3578889998877555554 457778888999888867766443 477899999999999999999999999877653
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.45 E-value=1.2e-05 Score=106.53 Aligned_cols=296 Identities=18% Similarity=0.197 Sum_probs=204.4
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
-+++.+..++++-+..+.|..|+..+..++....+ +..+..++|-++.++.|+.+.||-.|..++..+.....+.
T Consensus 422 l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~--- 496 (1431)
T KOG1240|consen 422 LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI--- 496 (1431)
T ss_pred eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC---
Confidence 35566666776655567778888888888876653 4567789999999999999999999988876664322211
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.|....-+-.-|+|.|-.++.| ....||-+-+.+|..+++..- .+.
T Consensus 497 -------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFl 543 (1431)
T KOG1240|consen 497 -------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFL 543 (1431)
T ss_pred -------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHH
Confidence 1111111123478888889999 677899999999999987542 122
Q ss_pred hHHHHHHh--ccCCCChhHH------HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1537 SLVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1537 ~lvp~Ll~--~l~d~~~~~r------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
.+...+-. .+++|+.++. .-++.| +..+-..+...+.|..+-||+...+.+..+|.-++
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG 610 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG 610 (1431)
T ss_pred HHHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Confidence 22222222 2455544211 011111 11223334456678888999999999999998887
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~ 1687 (2629)
..+. -+-|++.|...|+|.+|..|.+-+..|.-++-.+|.... +-++|.|.+.|.+.++. +...+..++..+++
T Consensus 611 k~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 611 KEKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIK 685 (1431)
T ss_pred hccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHH
Confidence 6432 345888899999999999999999998888888887644 45678787888766544 56677788877776
Q ss_pred hh--ChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1688 AL--GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1688 ~~--g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
.- .+..+.+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 686 ~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 686 LGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 32 2234456666667778899999999999999999887764
No 69
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.40 E-value=0.044 Score=76.16 Aligned_cols=300 Identities=18% Similarity=0.171 Sum_probs=167.9
Q ss_pred HHHHH-HHHHHHHHHhhcChhhhh-hchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2244 ELREQ-AALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2244 ~~r~~-aa~~L~~l~~~~~~~~l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
+.|.. ...+|..+++..+ .-+. .|+..+-|.|...........+...++..+...+..+...-..|+..|-+.+++.
T Consensus 1051 ~~~~~~~lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1051 EVRLLAYLSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred hhHHHHHHHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 34433 3455666666555 4343 5555544444333222233444455555555555444444445777888888887
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc--cC--ChhHHHHHHHH---hhhcC---C--H---HHHHHHHHHHHHHHhhc------
Q 000049 2322 LQDSTRTVRSSAALALGKLSAL--ST--RVDPLVGDLLS---SLQVS---D--A---GIREAILTALKGVLKHA------ 2380 (2629)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~l~~~--~~--~~~~ll~~Ll~---~l~~~---d--~---~vr~~~l~AL~~vi~~~------ 2380 (2629)
+--.+-..-..|..|+|.++.- ++ .+..++..... .++.+ + . ..-...+..++.+...+
T Consensus 1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~ 1209 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPS 1209 (1692)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCcc
Confidence 7666666667788999998652 21 23333333333 33322 1 1 11122233444444422
Q ss_pred --CCC---cChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChh----HHHHHHHHHHhhcCCCCchhhHhHHH
Q 000049 2381 --GKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG----QLADLLQELLNLASSPSWAARHGSVL 2451 (2629)
Q Consensus 2381 --g~~---~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~----~~~~~l~~ll~~~~~~~~~~~~~~~~ 2451 (2629)
|.. ..+...+.++.+|.-...+.+..+|..|...+|.++...|.= ++..++..+++...++. ..+..+..
T Consensus 1210 ~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~ 1288 (1692)
T KOG1020|consen 1210 NDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQ 1288 (1692)
T ss_pred CCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHH
Confidence 111 123567788888888888889999999999999999776642 23333333333211111 11211222
Q ss_pred HHHHHHhhC--------------------------CccccC----ChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHh
Q 000049 2452 VFATFLRHN--------------------------PSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2629)
Q Consensus 2452 ~l~~~l~~~--------------------------p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2629)
.+...+.+. ...... ......+++.+.+.+-+.+..+|..|+..+.-.|.
T Consensus 1289 n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~ 1368 (1692)
T KOG1020|consen 1289 NLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILN 1368 (1692)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 222222100 000111 12445567777788888889999999998875554
Q ss_pred hhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000049 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2629)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~ 2552 (2629)
-+. . ++...+|-++..-.|+....|..|...+.-+-++.+..|-
T Consensus 1369 QGL-V------hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~ 1412 (1692)
T KOG1020|consen 1369 QGL-V------HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVF 1412 (1692)
T ss_pred ccC-C------CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 432 2 3456777788777788888888888888877776665553
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.37 E-value=0.0026 Score=78.50 Aligned_cols=288 Identities=14% Similarity=0.040 Sum_probs=162.0
Q ss_pred HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcC-hhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q 000049 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920 (2629)
Q Consensus 1842 ~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~ 1920 (2629)
+....+.|-..++|.-..|.-.+...+.++.... + .+++...+..+-..|.++....|..|.+.|.++....+..+
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 3334444444456766677777777777766532 2 24566667777778889999999999999999998766542
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
. ..-+-+...+.|.+. .-+.+++..++.....+.+ +.++..+...+.|-....+..+..++..++-.++. -
T Consensus 339 ~-vcN~evEsLIsd~Nr---~IstyAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~-k 409 (898)
T COG5240 339 S-VCNKEVESLISDENR---TISTYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS-K 409 (898)
T ss_pred e-ecChhHHHHhhcccc---cchHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-H
Confidence 1 122334445555553 3455667766654433333 33333333444444434444555566666554443 3
Q ss_pred hhhhHHHHHHhccCcCc---hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHH
Q 000049 2001 IDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILP 2077 (2629)
Q Consensus 2001 ~~~ilp~Ll~~L~~~~~---~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~ 2077 (2629)
...++..|.+.|.++.. ..++.+++..++.- ......+|+..|..
T Consensus 410 ~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-----------------~p~skEraLe~LC~--------------- 457 (898)
T COG5240 410 KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN-----------------DPDSKERALEVLCT--------------- 457 (898)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh-----------------CchHHHHHHHHHHH---------------
Confidence 44566666666655322 13445555555421 01123344444443
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 000049 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 2156 (2629)
Q Consensus 2078 ~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~ 2156 (2629)
++.|.. ..+.+...++.+...... ..-..++..+.+++--+|..+|.+|+.+|..|+-+....+.+ ..+..
T Consensus 458 ----fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~ 529 (898)
T COG5240 458 ----FIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVEN 529 (898)
T ss_pred ----HHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHHH
Confidence 232221 111222233333222111 112233444444444567899999999999997665444443 35666
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHH
Q 000049 2157 TLIVLLSDSDSTTVAAAWEALSRVV 2181 (2629)
Q Consensus 2157 ~Ll~ll~d~d~~V~~~a~~aL~~l~ 2181 (2629)
.|-++++|.|++||+.|.-++..+-
T Consensus 530 ~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 530 ALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7778899999999999988877763
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.37 E-value=1.7e-06 Score=86.23 Aligned_cols=93 Identities=26% Similarity=0.355 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1395 ~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
.|.+++.++..++.+++..+.+|+..++|.++.++.|++..||..|++++..+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~-------------------------- 55 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS-------------------------- 55 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--------------------------
Confidence 588999999999999998899999999999999999999888888766665553
Q ss_pred hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
......+-.++++|++.+.+++.|+++.||.+|. .|.++
T Consensus 56 ------------k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 56 ------------KVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 3333444457789999999999999999998874 44444
No 72
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.35 E-value=0.025 Score=74.07 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=100.7
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhc
Q 000049 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV 2360 (2629)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l-~~~~~~~~~ll~~Ll~~l~~ 2360 (2629)
.+++-++..+.-+|+.++-..+...+. +++.|++.|.-. .-.+|+...-++|.+ +.|...++.|+|.+-..+++
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 356778888999999998776654444 455566666554 678999999999999 55667889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
+++-||...+--|..+++.. + ..+.+.++--..-.+-|.++++|+-+-.|+|.+...-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~---~-vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFG---I-VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhh---h-hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999998888888877631 1 234444444344445688999999999999998876443
No 73
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=0.031 Score=71.99 Aligned_cols=256 Identities=19% Similarity=0.284 Sum_probs=133.9
Q ss_pred hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh----------hhccchHHHHh--hhhcCCCHHHHHHHHHH
Q 000049 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----------QCLPKIVPKLT--EVLTDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~----------~~L~~ivp~L~--~~L~D~~~~VR~aA~~a 1522 (2629)
.+...+...+..-.+.+|+.-..|+..+..++++-+..-. ..+..+.+.++ +++.++|+.|+-.-.+.
T Consensus 437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ 516 (980)
T KOG2021|consen 437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL 516 (980)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 3455555555566678899999999999999987554211 11223333332 34566777777655555
Q ss_pred HHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000049 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2629)
Q Consensus 1523 L~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~ 1602 (2629)
+.+..+.+... ...+|.++.+.-|+ +++.+.+.+||..+.-....
T Consensus 517 ivRY~kff~~e--sq~ip~vL~aFld~---------------------------------rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 517 IVRYNKFFSTE--SQKIPLVLNAFLDS---------------------------------RGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHhcc--hhhhHHHHHHHccc---------------------------------hhccccccccchHHHHHHHH
Confidence 55443333210 12333333332222 34555566677777666666
Q ss_pred HhhhcCCCCcccchHhhhHHHHHHHhcCCCHH------------HHHHHHHHHHHHHhhhC--CC----Cchhh------
Q 000049 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE------------VRSVAARAIGSLIRGMG--EE----NFPDL------ 1658 (2629)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~------------VR~~A~~aL~~l~~~~g--~~----~~~~l------ 1658 (2629)
+.+.+. +.+.||.+.++..+..+|..+.+. -+.-.++++|-++..-. .+ +...+
T Consensus 562 fVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~ 639 (980)
T KOG2021|consen 562 FVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLIL 639 (980)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHH
Confidence 665542 356667777777776666322111 11122233333322100 00 11111
Q ss_pred ---HHHHHHHhccCCC----hHHHHHHHHHHHHHHHhhCh-----------hHHHhHhHHHHHhhc--CCChhhHHHHHH
Q 000049 1659 ---VSWLLDALKSDNS----NVERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2629)
Q Consensus 1659 ---l~~Ll~~L~~~~~----~~~R~~a~~~L~~i~~~~g~-----------~~l~~llp~l~~~l~--~~~~~vR~~a~~ 1718 (2629)
+-.+...+.++.+ ...-..++.+++.+.+++.. ..+...+..++..+. .....+|.+.-.
T Consensus 640 ~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrf 719 (980)
T KOG2021|consen 640 DQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRF 719 (980)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 1111122222221 12345566666666654321 134444444433332 345677888888
Q ss_pred HHHHhhhhhccchHhhHHhHHHHHHhhcC
Q 000049 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2629)
.+.++..++|++..||+++.+..+++...
T Consensus 720 t~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 720 TFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 88888888888888888888888887654
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.34 E-value=0.0005 Score=90.04 Aligned_cols=361 Identities=18% Similarity=0.181 Sum_probs=217.3
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc--
Q 000049 1340 SRLLDQLMKSDKY--GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-- 1414 (2629)
Q Consensus 1340 ~~ll~~L~~~~~~--~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~-- 1414 (2629)
|.++..|.+.++. .........|+.++..... +.+. ..++..+...++.+.+...-.+.+..+..+.+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 4455555544322 3344444555555543221 1111 14555555555544455566677777777766544222
Q ss_pred ---hhHHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhc----------cCCh-
Q 000049 1415 ---EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKAW- 1472 (2629)
Q Consensus 1415 ---~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w- 1472 (2629)
.-|... ++|.++...- +. ++.+=+.+...++.++..++......++..+...+- +..+
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 334443 7777766542 12 256777778888888888888877666666665443 1111
Q ss_pred -hhhHHHHHHH-HHHHhhCchhhhhhccchHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCch-hHHhHHHHHHhcc-C
Q 000049 1473 -RTKQSSVQLL-GAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGL-T 1547 (2629)
Q Consensus 1473 -~~r~~a~~~L-~~la~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l-~ 1547 (2629)
......+.++ +.++...++...+...+++..+..... ..++..|..+++++..++..+.+. .++.++..+.... .
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~ 240 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS 240 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc
Confidence 1222223333 333333333322344556666666644 345889999999999998776443 3455555554443 1
Q ss_pred CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHH
Q 000049 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2629)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2629)
... ...|..+..++..+.+.+-- -..|....+...+..+
T Consensus 241 ~~~---------------------------------------~~~~~~~~~~~~Wi~KaLv~--R~~~~~~~~~~~L~~l 279 (415)
T PF12460_consen 241 SED---------------------------------------SELRPQALEILIWITKALVM--RGHPLATELLDKLLEL 279 (415)
T ss_pred cCC---------------------------------------cchhHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHH
Confidence 111 12222222322222221100 0013344556666666
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhC----------------CCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1628 LVDPIPEVRSVAARAIGSLIRGMG----------------EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1628 L~d~~~~VR~~A~~aL~~l~~~~g----------------~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
+.+ +++...++++++.+..-.+ ...|..++|.+++..++.... .|.....+++.+++.++.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCH
Confidence 666 6778888888888876421 114678899998888765433 567778899999999887
Q ss_pred hH----HHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1692 VY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1692 ~~----l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
+. ++.++|.+++.+..+++.++.+++.++..+...-++.+.+|++.++|.+++.
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 74 4789999999999999999999999999999888888999999999998763
No 75
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.33 E-value=1.5e-05 Score=107.37 Aligned_cols=339 Identities=17% Similarity=0.215 Sum_probs=218.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHh
Q 000049 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2629)
Q Consensus 1621 l~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll 1698 (2629)
+..+...+.-..+..-..++.++..++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 100 ~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~- 174 (815)
T KOG1820|consen 100 VEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL- 174 (815)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc-
Confidence 3444444555566666778888888888777542 122221 112222 234677777777777777775421111
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC-hhHHH--HHHHHHHHH--------HH-
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRD--AALGAGHVL--------VE- 1766 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-~~VR~--~al~al~~i--------v~- 1766 (2629)
.+......++.+..+.|.....+..+--+.......++. +++.. .....+... ..
T Consensus 175 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 175 -------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred -------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 133344444444444443222222222222222222211 11100 000000000 00
Q ss_pred --Hh-hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH
Q 000049 1767 --HY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2629)
Q Consensus 1767 --~~-~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~ 1843 (2629)
.+ ..+..+.+-|.++..+.+++|+.|..+++-+...+....+. . ... +.+
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~---------~-~~~-----------------~~~ 294 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE---------I-VKG-----------------YTG 294 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc---------c-ccC-----------------cch
Confidence 00 11234457788899999999999999999888877542200 0 000 111
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2629)
.+.-.+-....|.+..|-..|+.++..++...+..+..|.....+.++.++.+.....|.....++..++.. ..+..
T Consensus 295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~~ 371 (815)
T KOG1820|consen 295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLSK 371 (815)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHHH
Confidence 122222334689999999999999999999998889999999999999999999999999999999888873 24567
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchh-hHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
+.+.+..++++.+|..|..+..++...+...++. ....-..+++|.+..+.+|.+.+||.+|..+++.+++.+|...+.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7888888999999999999999999888877743 234456889999999999999999999999999999999987766
Q ss_pred hhHHH
Q 000049 2003 EIVPT 2007 (2629)
Q Consensus 2003 ~ilp~ 2007 (2629)
.++..
T Consensus 452 k~L~~ 456 (815)
T KOG1820|consen 452 KLLKD 456 (815)
T ss_pred HHHHh
Confidence 55443
No 76
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.025 Score=72.78 Aligned_cols=281 Identities=21% Similarity=0.216 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1636 R~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
-.-|.-++|.+-...|. +....|.+.|++.+...+|.|++-+++-...+.... ++...+...+...+.-.-++
T Consensus 396 EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~---eiYe~lKevLy~D~AvsGEA 468 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE---EIYEKLKEVLYNDSAVSGEA 468 (929)
T ss_pred ccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH---HHHHHHHHHHhccchhhhhH
Confidence 34677777776655554 467778888887777788999988776543332222 22233333333333434444
Q ss_pred HHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHH--HHHHhhhchhhhHHHHHhhccCCCchHHH
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHV--LVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~--iv~~~~~~~i~~llp~l~~~l~d~~~~vR 1792 (2629)
+-..++-+...... .+.+.-++.+-.+. ++.+. +++.. -+..|+.. +..-|.+.+.+.|++.-.|
T Consensus 469 Agi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~----RGl~vGiaL~~ygrq--e~Ad~lI~el~~dkdpilR 536 (929)
T KOG2062|consen 469 AGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKII----RGLAVGIALVVYGRQ--EDADPLIKELLRDKDPILR 536 (929)
T ss_pred HHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHH----HHHHHhHHHHHhhhh--hhhHHHHHHHhcCCchhhh
Confidence 44444433321111 23444444444332 23322 22221 11123322 1223344445566666677
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHH-HhhccCccHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL-YMVRSDVSLSVRQAALHVWKTI 1871 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L-~~~~~D~~~~VR~aA~~~l~~l 1871 (2629)
.+.+-.++- ...|... +..+..+ ....+|.+..||++|+..++-+
T Consensus 537 ~~Gm~t~al---------------------------------Ay~GTgn-nkair~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 537 YGGMYTLAL---------------------------------AYVGTGN-NKAIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhhHHHHHH---------------------------------HHhccCc-hhhHHHhhcccccccchHHHHHHHHHheee
Confidence 655433221 1111111 1122222 2346899999999999999988
Q ss_pred HhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1872 VANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1872 ~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
+-..|.+ .+..+..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-||+++|.+++-+
T Consensus 583 l~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 583 LFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred EecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 7766653 233333333 558899999999999888777754 3344455556688888999999999988
Q ss_pred HHhhchhhHHHhHHHHHHHHHHHhcCCcHHH
Q 000049 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2629)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~V 1981 (2629)
+.++.+ ..-|.+..+...+.+.+.|.+++.
T Consensus 652 m~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 652 MIQQTE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhccc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 776653 345556777777778888876654
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.28 E-value=0.0012 Score=86.46 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=164.2
Q ss_pred hHhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~~~-~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
....++..+++.. ...++..|..+..++..++..+. .+.+..++..+.... ...+...|..+...+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4555666666664 44558888888899988887764 345778888777777 45556677777777766665543344
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccc
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l 2227 (2629)
.+....++..|+.++++ +++...+..+++.++...+. .+. .... ..+.-+...+..
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~-----------~~~~----------a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLN-----------KENH----------ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcC-----------cccc----------chhhhHHhHHHH
Confidence 56677888899999987 56777788888887654211 100 0000 011111112455
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
..++|.++++..+.+.+.|.....+|+.+.+++|.+.+.++++.+.+-|++.+.-. +.+++.+++++|..++..-+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 67899999999998888999999999999999999999999999999999999654 77899999999999999877777
Q ss_pred cCchHHHHHHHHH
Q 000049 2308 KPFLPQLQTTFIK 2320 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k 2320 (2629)
.+|+..+++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776655
No 78
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0012 Score=85.95 Aligned_cols=435 Identities=17% Similarity=0.169 Sum_probs=243.2
Q ss_pred HhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch
Q 000049 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2629)
Q Consensus 1454 ~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2629)
..+..++|.++...+..+-..|+-.-.-+...+..-|..-. ..++.++.-..|++|.+|.-|.+.++.+.- +.
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~ 117 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK 117 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEee---hH
Confidence 45667778777777776666666555555555555554322 124445556677788888777766654431 01
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000049 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2629)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2629)
....+...+.+.++|.++.+|+.+..++..+... +++..
T Consensus 118 ---------------------------------------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~ 156 (734)
T KOG1061|consen 118 ---------------------------------------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV 156 (734)
T ss_pred ---------------------------------------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc
Confidence 1122333445566666777777777777766543 11111
Q ss_pred cchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh
Q 000049 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~ 1689 (2629)
.-..+++.|..++.|.+|.|-..|..++..+.+.-... ....++..++..+..-+.+ +-+..+.......
T Consensus 157 --~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 157 --EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCLAEYV 230 (734)
T ss_pred --cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHHHhcC
Confidence 12357788888888999999999999998888755432 2244555555555443322 1222333334433
Q ss_pred ChhH--HHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1690 GTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1690 g~~~--l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
..+. ...++..+...+++.++.+--++..++-.+...+..--..++..+-|+++..+..+. ++.-.+++-...++..
T Consensus 231 p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 3332 234555555566667777766777777766665555333456677788887777665 6666677776666654
Q ss_pred hhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHH
Q 000049 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2629)
Q Consensus 1768 ~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~ 1847 (2629)
.+.- ...-+..+.-.-.|. --++..=++.+..+ ...+...+++.
T Consensus 310 ~p~~-~~~~~~~Ff~kynDP-iYvK~eKleil~~l----------------------------------a~~~nl~qvl~ 353 (734)
T KOG1061|consen 310 RPEI-LKVEIKVFFCKYNDP-IYVKLEKLEILIEL----------------------------------ANDANLAQVLA 353 (734)
T ss_pred ChHH-HHhHhHeeeeecCCc-hhhHHHHHHHHHHH----------------------------------hhHhHHHHHHH
Confidence 4321 100000000000111 11222222222221 12222334455
Q ss_pred HHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000049 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2629)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2629)
.+...-.+.+.+.-+.|+.+++.++....+. ..+++.++..+.-...-+-+.+...+.++.++.+... ..+.+.
T Consensus 354 El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~ 427 (734)
T KOG1061|consen 354 ELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAI 427 (734)
T ss_pred HHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhh
Confidence 5544556666676777888888887644432 3445555555553333344556667777888776553 455555
Q ss_pred HhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000049 1928 LSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2629)
Q Consensus 1928 L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2629)
+-..+.+ .+|+.|.+..+-+|+-.... +....++..+.+...|....|+-.-..+.-+
T Consensus 428 l~~~~~sl~epeak~amiWilg~y~~~i------~~a~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 428 LCENLDSLQEPEAKAALIWILGEYAERI------ENALELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred hcccccccCChHHHHHHHHHHhhhhhcc------CcHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 5555544 56888888888887643332 2234556666677777777776654433333
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.012 Score=75.30 Aligned_cols=257 Identities=15% Similarity=0.191 Sum_probs=164.3
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2629)
+-.+.+-+.++..+++.-+-+|.-|+.++..+|...+..+.+ .++.|..-++|+|+.|+.+|...++.+.+..|+.
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~----~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 445778888899999999999999999999888766655544 4556777789999999999999999999999998
Q ss_pred cccchHHHHHHHHhhhhhhhhhhhcCCc-ccccC-CC--CcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChh
Q 000049 2188 VQPSYIKVIRDAISTSRDKERRKKKGGP-ILIPG-FC--LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ 2263 (2629)
Q Consensus 2188 ~l~~l~~~l~~~l~~~~~~~~~~~~~~~-~~l~g-~~--l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~ 2263 (2629)
+++ +-+.+...+.+... .|..-- ..+.| +. -|+--..++|.+.+.+.+.... .-..+|+..++...=..
T Consensus 216 yL~-LAP~ffkllttSsN----NWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 216 YLQ-LAPLFYKLLVTSSN----NWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSS 288 (877)
T ss_pred ccc-ccHHHHHHHhccCC----CeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhcc
Confidence 764 23333333322211 121100 00100 00 1333344667776666554321 22356666666541001
Q ss_pred hhhhch--hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2264 SLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2264 ~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
....+. .+++-.=+|++-+..+++.|...|.+++.++...+..+ ..-...+++||.|.++++|..|...|-.++
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V----qa~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV----QAHKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH----HHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 111111 11221123444444588999999999999988655433 334567899999999999999998876664
Q ss_pred hccCChhHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhc
Q 000049 2342 ALSTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHA 2380 (2629)
Q Consensus 2342 ~~~~~~~~ll~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~ 2380 (2629)
. ..++-.++..|+..+..++ ...|..++..+-++++..
T Consensus 365 s-kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 365 S-KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred h-hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 3 3567788888888875555 367777776666666543
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.036 Score=69.02 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=115.5
Q ss_pred hhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1571 ~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
...+..+.|.|...+.++-.-+...++..+..++..- .-..++++.+..|...|..+....|-.|.+.|..++...
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 3455678888888888876677777777777766431 112467788888999999998899999999999998876
Q ss_pred CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
++.. .-.-+.+ +.|-++. .|.-+..++..+++.-..+..+.++..+.....+-+...|.-++.++..++..++..
T Consensus 335 P~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 335 PQKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred Ccee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 6541 1111111 1122222 355667777777776555556666555555555555556666677777777777765
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
...|+.-+...+++ ...-+.+..+.+++..+++.
T Consensus 410 ~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 410 KLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhh
Confidence 55555544444433 12223445555555555443
No 81
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.0013 Score=79.60 Aligned_cols=508 Identities=16% Similarity=0.176 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHHHHHhcChh-hHhhhHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------c
Q 000049 1858 LSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL----------G 1917 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~-~l~~~l~~Ll~---------~L~~~L~~~~~~~R~~A~~~L~~lv~~~----------~ 1917 (2629)
..||..|+.++.......++ .+..|...++| .+.-.++|+++..|..|.+.+..+.... |
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 56888898888887776553 33344444333 1223467899999999999998887532 2
Q ss_pred cc-hhh----------hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHHHHHH
Q 000049 1918 ER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRES 1984 (2629)
Q Consensus 1918 ~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~ 1984 (2629)
+. +.| +.-.++...+. +..+.+...+..+|+.++....-..+ ..++..+...+.+.+...|+.||-.
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 21 222 11122222222 34556666677788877766544444 3456777888888888999999999
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc----h---hHHHHHHHHHHhhh--------ccC-------cCcccch
Q 000049 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT----S---DTALDGLKQILSVR--------TTA-------VLPHILP 2042 (2629)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~----~---~~aL~~L~~il~~~--------~~~-------ilp~Lip 2042 (2629)
+...++.+..... .+|.+-..+..... . ...-+..++++... +.. ++...+.
T Consensus 170 ~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~ 243 (728)
T KOG4535|consen 170 SLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS 243 (728)
T ss_pred HHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence 8888887764322 12222222211100 0 00111222222110 000 0000000
Q ss_pred hhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHhh
Q 000049 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKG 2120 (2629)
Q Consensus 2043 ~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~ 2120 (2629)
....++-..+ ......+++|. +..+ ..+|-.+...+..+...++- .++-.+...+..+
T Consensus 244 i~~~~~~~s~---~~~~~~~~~~~----------------~~~p-s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~ 303 (728)
T KOG4535|consen 244 IVVLPKEDSC---SGSDAGSAAGS----------------TYEP-SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKC 303 (728)
T ss_pred eeecCCcccc---chhhHHhhhcC----------------ccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000111111 11111111111 1111 23555556666555555442 4466677777888
Q ss_pred cCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc--cc----ccchHH
Q 000049 2121 VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK--EV----QPSYIK 2194 (2629)
Q Consensus 2121 l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~--~~----l~~l~~ 2194 (2629)
+.+.++.+...+..++..+.......+.|. .....+..+ ++..+...-+. .. .+.+.-
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~---~fw~~~l~~p~~~~~YDs~~~Tl~~ 367 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRA---PFWTMMLNGPLPRALYDSEHPTLQA 367 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhc---cHHHHHccCCChhhhhhhcCCCchh
Confidence 888888888888877777665433222221 011122221 11111111111 11 111111
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
...+.+... + ..+-..+|.+-....++|+.|..+. +.-++..|.++++-++-+-+......|+..-.
T Consensus 368 s~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa 435 (728)
T KOG4535|consen 368 SACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAA 435 (728)
T ss_pred HHHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHH
Confidence 111221111 1 0222234555566778888777643 33466677777777766555444455555555
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc---cCch----HHHHHHHHHH--cCCC-CHHHHHHHHHHHHHHHhc
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFL----PQLQTTFIKC--LQDS-TRTVRSSAALALGKLSAL 2343 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l----p~L~~~~~k~--L~d~-~~~vR~~Aa~aLg~l~~~ 2343 (2629)
....+.++++ .-.+|..+..+++.+-..+...+ ..+. ..+....+.. ..+. +..||.+|..+||++..+
T Consensus 436 ~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 436 NAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 5566777764 45677777778876655432221 1122 2222222222 2333 678999999999998542
Q ss_pred -cCChhHHHHHHHHhhh---------cCCHHHHHHHHHHHHHHHhhcCCCc-ChHHHHHHHHHHHHhhcC-CCHHHHHHH
Q 000049 2344 -STRVDPLVGDLLSSLQ---------VSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVSA 2411 (2629)
Q Consensus 2344 -~~~~~~ll~~Ll~~l~---------~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~a 2411 (2629)
++-...-+.++.+.-. .....||-++++++..++.+-.-.+ +.+..+.+++.|..++.+ .+-.+|..|
T Consensus 515 lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 515 LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 3322333333333321 1136889999999999997643322 246788888888887776 477899999
Q ss_pred HHHHHHHHh
Q 000049 2412 ASILGIMSQ 2420 (2629)
Q Consensus 2412 a~~Lg~L~~ 2420 (2629)
|.+|..-.+
T Consensus 595 A~aL~vp~~ 603 (728)
T KOG4535|consen 595 AAALSVPGK 603 (728)
T ss_pred hhhhcCCCC
Confidence 877765444
No 82
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.059 Score=69.57 Aligned_cols=338 Identities=15% Similarity=0.143 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHh--ccCchhHHH-HHHHHHH
Q 000049 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKL--GRLFEPYVI-QMLPLLL 1426 (2629)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~Al~al~~La~~~--~~~~~~~v~-~ilp~ll 1426 (2629)
+|+.++-.+....+...+. ++++++...+. +-++++..++|+..+..+..-. ...+...+. -++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 5556666666666666665 78888887772 1236788889999999988722 233333333 3688888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhh--CchhhhhhccchHHH
Q 000049 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2629)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~--~p~~l~~~L~~ivp~ 1503 (2629)
..+.++.-..|..+++.+..+-..+++.++ -.........+.+..-.++..|..++..+... ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999989999999988888667766654 45566666777777778888888888877764 334577888999999
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHhhhcCc--hhH-HhHHHHHHh----ccCCCCh---hHH----HHHHHHHhc-cccc
Q 000049 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLM----GLTDPND---HTK----YSLDILLQT-TFVN 1567 (2629)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~lvp~Ll~----~l~d~~~---~~r----~al~~L~~~-~~~~ 1567 (2629)
++.+-++-+.++-..+.+++ +.+.+.+.. +++ ..++..+++ .+..+++ .+. .|...|... +..-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 99888876666655555443 344444431 222 334443333 2333311 111 122211110 1110
Q ss_pred cCC-h-----hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000049 1568 TVD-A-----PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2629)
Q Consensus 1568 ~~~-~-----~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~VR~~A~ 1640 (2629)
..+ . ..-..+.|.+.=.+.+.-.+.-+.|++++.+..-.. +++.|....+...+.+++.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1 122334455544455555677788888887654322 34555556666666666666543 4456667
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhccCCC-hHHHHHHHHHHHHHHHhhChhHHHhHhH
Q 000049 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2629)
Q Consensus 1641 ~aL~~l~~~~g~~------~~~~ll~~Ll~~L~~~~~-~~~R~~a~~~L~~i~~~~g~~~l~~llp 1699 (2629)
-++..++..-+.+ +..-+...+...+.++.. -.++.++++-+-.++-.++.+.++..+|
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p 769 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP 769 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH
Confidence 7777776643332 122233333344444332 1345555555555555554444444444
No 83
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0027 Score=82.82 Aligned_cols=402 Identities=17% Similarity=0.188 Sum_probs=224.6
Q ss_pred cCCCcch-hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000049 1293 KDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2629)
Q Consensus 1293 ~~~~~l~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2629)
...|... ..+..+++...++++.+|..+...++.+- ++.-...++..+...+. +++.-+|+.++.|.+.+-. .++
T Consensus 78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~--v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~ 153 (734)
T KOG1061|consen 78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR--VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDP 153 (734)
T ss_pred ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CCh
Confidence 3445443 34678888899999999998877665431 12222344445555443 4456789999999888775 344
Q ss_pred chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1372 ~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
+.....++++.|.+++.|. ++.+-..|+-++..+.+.-+.. ......+++..++..+..-+..-+- ..+..+...
T Consensus 154 ~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhc
Confidence 4444458899999999876 7888888999999988865531 1122234555555555443333222 223333333
Q ss_pred hcHH--hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1451 LSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1451 l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
.+++ ....++..+...|.+.+..+..+++..+-......+......+..+-|.++.++.- .++++-.|..-+..+..
T Consensus 230 ~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 230 VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQ 308 (734)
T ss_pred CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHH
Confidence 3322 23456666666677777767777777766655544443233344455555554443 44777666665555544
Q ss_pred hcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1529 ~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
...+ .+..-+..++-..+||- .++..-.+++..++..
T Consensus 309 ~~p~-~~~~~~~~Ff~kynDPi----------------------------------------YvK~eKleil~~la~~-- 345 (734)
T KOG1061|consen 309 KRPE-ILKVEIKVFFCKYNDPI----------------------------------------YVKLEKLEILIELAND-- 345 (734)
T ss_pred hChH-HHHhHhHeeeeecCCch----------------------------------------hhHHHHHHHHHHHhhH--
Confidence 3221 11111111111112221 1122222233222221
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~ 1688 (2629)
..+++++.-+.....+-+.+.-..+++|+|.++....+. .+.++.|++.+....++ +...+...+-.+.+.
T Consensus 346 ------~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 346 ------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRK 416 (734)
T ss_pred ------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhc
Confidence 123345555555555666666777888888887766654 66777777776644333 222333444445544
Q ss_pred hChhHHHhHhHHHHHhhcC-CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 1689 LGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 1761 (2629)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~-~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al 1761 (2629)
++..+ +.+++.+-....+ .+|+.|.+.++.++..+..+.+ ...++..+++...|+...|+-.-+.+.
T Consensus 417 yP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ 484 (734)
T KOG1061|consen 417 YPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAA 484 (734)
T ss_pred CCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 44332 4444444444333 4677888888888887777655 244666677777777777765544443
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.14 E-value=7.6e-06 Score=81.61 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCC
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPN 1550 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~ 1550 (2629)
.|++++..|.+++...++...++++.|+|.++.++.|++++||.+||++|.++++..++ +++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 58899999999999888889999999999999999999999999999999999998876 356888999999999999
Q ss_pred hhHHHHHHHH
Q 000049 1551 DHTKYSLDIL 1560 (2629)
Q Consensus 1551 ~~~r~al~~L 1560 (2629)
+.+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655443
No 85
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00066 Score=86.40 Aligned_cols=279 Identities=21% Similarity=0.215 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCc
Q 000049 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPS 1313 (2629)
Q Consensus 1234 ~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~ 1313 (2629)
..++-|.--+-..||.+..+.|. +++.+. ..+.+|.+++.=+|-.+. -..-+.+.+.+-..|..++
T Consensus 397 GGalyAlGLIhA~hG~~~~~yL~----~~Lk~~-----~~e~v~hG~cLGlGLa~m-----GSa~~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRGITDYLL----QQLKTA-----ENEVVRHGACLGLGLAGM-----GSANEEIYEKLKEVLYNDS 462 (929)
T ss_pred cchhhhhhccccCcCccHHHHHH----HHHHhc-----cchhhhhhhhhhccchhc-----ccccHHHHHHHHHHHhccc
Confidence 34455544444456666445544 444432 245677776544443322 2234567788888887766
Q ss_pred HHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCH
Q 000049 1314 EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2629)
Q Consensus 1314 ~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~ 1393 (2629)
.-.-.++.-.++-++ .+....+.++.++.--.+.....+.++-+.+++.++-+... +.-+.+++++.++ |+
T Consensus 463 AvsGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DP 533 (929)
T ss_pred hhhhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-ch
Confidence 555555555555443 34445677777776654444456778888888877755432 2334677778877 89
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc-CCh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAW 1472 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w 1472 (2629)
.-|.++++.++.-..+-|+ ..-+..+++. ..+|.+.+||.+|..+++.+.-.- ...+|..++.|.+ -+.
T Consensus 534 ilR~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNP 603 (929)
T ss_pred hhhhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcCh
Confidence 9999999877766655553 1223333332 478999999999999988774322 2345666666654 578
Q ss_pred hhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---chhHHhHHHHHHhccCCC
Q 000049 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDP 1549 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~ 1549 (2629)
.+|.++..+||-.+.+... ..-+..|-.+..|+..-||..|+-++.-+.-... +|.+..+...+.+.+.|.
T Consensus 604 HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 9999999999876644322 2233444556789999999999988886653322 466677777777777666
Q ss_pred Ch
Q 000049 1550 ND 1551 (2629)
Q Consensus 1550 ~~ 1551 (2629)
++
T Consensus 678 hE 679 (929)
T KOG2062|consen 678 HE 679 (929)
T ss_pred hh
Confidence 54
No 86
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.02 Score=69.76 Aligned_cols=489 Identities=14% Similarity=0.111 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhHHHH---------HhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000049 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~----~i~~llp~---------l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~ 1817 (2629)
..||..|+..+....+.++.+ +...++|. +.-+++|.+.|.|.-+++....+++.- |.-+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls~ 84 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLSV 84 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHHH
Confidence 468888888877776655443 12223332 234678999999999999998887531 100000
Q ss_pred CC--CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh-H-hhhHHHHHHHHHHH
Q 000049 1818 GS--DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L-KEIMPVLMNTLISS 1893 (2629)
Q Consensus 1818 ~~--ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~-l-~~~l~~Ll~~L~~~ 1893 (2629)
.. .+..+.. ..-.+...+- ...+++-.. .-.+....+-...++++..++.++|-. + ..++-.++..+.+.
T Consensus 85 a~~~~~~~ftp--f~v~~a~si~--~~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~ 158 (728)
T KOG4535|consen 85 AEDTSDHAFTP--FSVMIACSIR--ELHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY 158 (728)
T ss_pred HhccCCcCCCc--hHHHHHHHHH--HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 00 0111100 0000110000 000111111 123455667788899999999998843 2 23566777888888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhcc---------------c-hhh-----hHHHHH------h-----------------
Q 000049 1894 LASSSSERRQVAGRALGELVRKLGE---------------R-VLP-----SIIPIL------S----------------- 1929 (2629)
Q Consensus 1894 L~~~~~~~R~~A~~~L~~lv~~~~~---------------~-~l~-----~llp~L------~----------------- 1929 (2629)
+.++++.+|..+...++.++..... + ..+ .-...+ .
T Consensus 159 i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i 238 (728)
T KOG4535|consen 159 IRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLI 238 (728)
T ss_pred hhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCccee
Confidence 8999999999999999888753210 0 000 000000 0
Q ss_pred ---------------------hhcCC--CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHH
Q 000049 1930 ---------------------RGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986 (2629)
Q Consensus 1930 ---------------------~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~ 1986 (2629)
+++.. .-..+|..+.+.|..+....+ ....|..++...+...+.+.++.+...++
T Consensus 239 ~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~a 316 (728)
T KOG4535|consen 239 RLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHGA 316 (728)
T ss_pred eeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 00000 001244444444443333222 22345566667777788899999999998
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhc--cCcCcccchhhhcCCCchhHHHHHHHHHHHh
Q 000049 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2629)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~--~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~ 2064 (2629)
.++..+....+.+ +.|. ...++.-...+..++..++ ........+.+ ......++..+....
T Consensus 317 ~ll~~lg~~lv~~----~~P~-------~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl-----~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 317 KLLEELGTGLIQQ----YKPD-------STKAPDQRAPFWTMMLNGPLPRALYDSEHPTL-----QASACDALSSILPEA 380 (728)
T ss_pred HHHHHHHHHHhhh----cCCC-------cccchhhhccHHHHHccCCChhhhhhhcCCCc-----hhHHHHHHhhcCchh
Confidence 8887766544421 1110 0000000011222221100 00111111111 111223333333222
Q ss_pred CCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 2065 GPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l 2139 (2629)
-..|..--.+..+.......| ++.-++..+..+....+.+-+. ..+......++..+.|..-.+|.-+++.+|++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 122222223455555555543 3344666666666544443221 22344455566666777778899999999988
Q ss_pred HHhc----hh---hhhhhHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhh
Q 000049 2140 YKNS----KL---YLVDEAPNMISTLIVLLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2629)
Q Consensus 2140 ~~~~----~~---~~~~~~~~il~~Ll~ll~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 2209 (2629)
.... +. .-.......+..++.... -....|+.++.++|+++..-+.. +.+.....+ .+...
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-----i~~~~~~e~---~~~~~- 531 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-----IEKPTFAEI---IEESI- 531 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-----hhhccHHHH---HHHHH-
Confidence 5432 21 112233444555554432 22457999999999988643321 111000000 00000
Q ss_pred hhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCh-hhhhhchhhhhHHHHHHhcCCCCHhH
Q 000049 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2629)
Q Consensus 2210 ~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~l~p~v~~i~~~Li~~l~~~~~~~v 2288 (2629)
.+++. + ....+...+|-+++.++|.+.++-.- -.-.++.+..++.|...+.+..+-.+
T Consensus 532 -~~l~~------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 532 -QALIS------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred -Hhccc------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 00000 0 01123457889999999999976220 11134556666666666666555666
Q ss_pred HHHHHHHHHH
Q 000049 2289 KSAILSTLSI 2298 (2629)
Q Consensus 2289 k~~al~~L~~ 2298 (2629)
|..|..+|..
T Consensus 591 Ri~AA~aL~v 600 (728)
T KOG4535|consen 591 RIRAAAALSV 600 (728)
T ss_pred eehhhhhhcC
Confidence 6666666553
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.08 E-value=0.13 Score=68.58 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=115.5
Q ss_pred cchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000049 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2629)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2629)
....+.|++.+++++.+..+|..-..+|+-++.++|.+.+.|.++.+.+-|++.++-. +..+|...+.++..++...+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccc
Confidence 3456899999999977788899999999999999998899999999999999999864 778999999999999998888
Q ss_pred CccCchHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhcc--CCh----hHHHHHHHHhhhcCCHHHHHHHH
Q 000049 2306 ALKPFLPQLQTTFIKCLQDST---RTVRSSAALALGKLSALS--TRV----DPLVGDLLSSLQVSDAGIREAIL 2370 (2629)
Q Consensus 2306 ~l~p~lp~L~~~~~k~L~d~~---~~vR~~Aa~aLg~l~~~~--~~~----~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2629)
-...++..+.+.++..-.|++ -.||..|.+||+.+.+.. +++ +..+..|...+.++..-||..+.
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 888888999999888766653 789999999999997632 233 44444455555555455565444
No 88
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.18 Score=69.01 Aligned_cols=636 Identities=16% Similarity=0.189 Sum_probs=307.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE--R-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~--~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2629)
..++..+.+.++..|....+.++.++...-. . +...++..+.+.+.|-++-+|..+......+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3444567788888999998888887754311 1 2234788888888999999999999988887765432
Q ss_pred HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhccCcCc------hhHHH
Q 000049 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQT------SDTAL 2022 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~~------~~~aL 2022 (2629)
.......++......+.|.+.-||.+|++.+..+....+-.. .++.+..+-+.+.+... ...-.
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 123446677777788899999999999998888776544211 12222222212211100 00000
Q ss_pred HHHHHHHh-h------hcc------CcCc---ccchhhhcCCCchhHHHHHHH--HHHH--hCCChhhhHhhhHHHHHHh
Q 000049 2023 DGLKQILS-V------RTT------AVLP---HILPKLVHLPLSAFNAHALGA--LAEV--AGPGLNFHLGTILPALLSA 2082 (2629)
Q Consensus 2023 ~~L~~il~-~------~~~------~ilp---~Lip~L~~~~~~~~~~~aL~~--La~~--~g~~l~~~l~~il~~Ll~~ 2082 (2629)
...+.++. . ... .-.+ .+-....+.|. ....+.. +... -+-+|...+...+|.+.+.
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~---~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~l 549 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPA---ENEIMQLKALVQFLEDAISFSDEMSEAIPIISQL 549 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 000 0000 00000011110 0001111 0000 1334666677888888888
Q ss_pred cCCCC-HHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHH
Q 000049 2083 MGDDD-MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIV 2160 (2629)
Q Consensus 2083 L~~~~-~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ 2160 (2629)
+...+ .+|.+. +..+. .+..++-++....+..++..+=..+..+|.+...+...++-..+ ..-......+.+.|+.
T Consensus 550 l~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~ 627 (1251)
T KOG0414|consen 550 LFSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSK 627 (1251)
T ss_pred HhcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Confidence 85554 444433 22222 12234444444445555444444455578877777777754432 1211112456666666
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCcccccc-hHHHHHHHH--hhhhhhhhhhhcCCcccccCCC---CcccchhhHHHH
Q 000049 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAI--STSRDKERRKKKGGPILIPGFC---LPKALQPLLPIF 2234 (2629)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-l~~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~---l~k~l~~ilp~l 2234 (2629)
++.|....-+.+--+.+..+.. +.++.. .+..+-+.. +..+. ...+..+.. .+-|.. .|.-+..-+..+
T Consensus 628 l~~~~s~~d~~slE~vl~~lv~---~~~Id~~Vi~~Lw~~ftlq~~~~-~~~q~~~sl-~iL~M~s~s~~~Iv~~~~~~l 702 (1251)
T KOG0414|consen 628 LLIDASIGDLTSLEEVLCELVA---RGYIDAAVINKLWEIFTLQKKGT-TNEQSRGSL-IILGMASRSKPSIVLANLDLL 702 (1251)
T ss_pred HHhcccccchhhHHHHHHHHHh---CCCccHHHHHHHHHHHHHHhccC-chhhhccce-eehhhhhccChhhhhhhhHHH
Confidence 6655433222222223333322 112111 111111111 10000 000001110 011110 011111111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcCh-hh--hhhc----hhhhhHHHHHHhcC---CCC--H-hHHHHHHHHHHHHHH
Q 000049 2235 LQGLISGSAELREQAALGLGELIEVTSE-QS--LKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2235 l~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~--l~p~----v~~i~~~Li~~l~~---~~~--~-~vk~~al~~L~~L~~ 2301 (2629)
. .+.-|.+.....++..++.++..... .. -.++ -..+++.|-..+.. +.+ | .+...++.++..+..
T Consensus 703 v-~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~ 781 (1251)
T KOG0414|consen 703 V-QIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM 781 (1251)
T ss_pred H-HhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc
Confidence 1 11123455555555555555433221 00 0111 11122222222211 111 2 355556666555543
Q ss_pred hcCCCccCchHHHHHHHHHH------------cCCC--------CHHHHHHHHHHHHHHHhcc-CChhHHHHHHHH----
Q 000049 2302 KGGIALKPFLPQLQTTFIKC------------LQDS--------TRTVRSSAALALGKLSALS-TRVDPLVGDLLS---- 2356 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~------------L~d~--------~~~vR~~Aa~aLg~l~~~~-~~~~~ll~~Ll~---- 2356 (2629)
.|..+ ..++.+...+. ..|+ .+.+...-..+.|.++..+ -.++..++..+.
T Consensus 782 -~Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~ 857 (1251)
T KOG0414|consen 782 -LPEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKI 857 (1251)
T ss_pred -ChHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 11222222111 1111 0112332445555542211 111222220000
Q ss_pred -----hhhcCC----------------------HHHHHHHHHHHHHHHhh---cCCCcChHHHHHHHHHHHHhhcC----
Q 000049 2357 -----SLQVSD----------------------AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH---- 2402 (2629)
Q Consensus 2357 -----~l~~~d----------------------~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~---- 2402 (2629)
.-++.+ ...-....+++..+... .|. ......+.+++.+.+..
T Consensus 858 ~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~ 934 (1251)
T KOG0414|consen 858 KTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLF 934 (1251)
T ss_pred HHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcC
Confidence 000100 00012344555555443 121 34567777777777754
Q ss_pred CCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc-CCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhh
Q 000049 2403 DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2629)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~ 2481 (2629)
.++..+.+|.-+||++.-... .-...-++-+.+.. .+++...|..++.+++.+....|.. .+...+.+...+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa-~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl------ie~~T~~Ly~rL 1007 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL------IEPWTEHLYRRL 1007 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc------cchhhHHHHHHh
Confidence 578999999999999875432 22222333332222 3555556777777887776666653 467788999999
Q ss_pred cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHH
Q 000049 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALF 2558 (2629)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l 2558 (2629)
.|.++.+|++|+..+..++.... ......++.+..++.|++..+|..|-.-.+-++++. +.+-..|+.+
T Consensus 1008 ~D~~~~vRkta~lvlshLILndm-------iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdi 1076 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILNDM-------IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDI 1076 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHhhh-------hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHH
Confidence 99999999999999999988764 234567888999999999999999998888888765 5554444433
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.056 Score=69.23 Aligned_cols=455 Identities=18% Similarity=0.178 Sum_probs=242.9
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-ccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhH
Q 000049 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2629)
Q Consensus 1881 ~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~-~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2629)
+.+..+...+.+-+.++++..-..|..|++.+-..- .+.+.+.+-.+|.. .+...-+|+.++.++-.+.... ++.+
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~s-pDl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKS-PDLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcC-cccc
Confidence 445555666666677888888888888887654321 22233333333332 1334568888888888777663 2322
Q ss_pred HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcc
Q 000049 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2629)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~ 2039 (2629)
.+ ..-...+...|.|.+-.|-.++...+..+.....+... ..+| -++..|..++...+.....+
T Consensus 184 ~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-~~~~-------------~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 NP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-TCLP-------------LAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred Ch--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-hhHH-------------HHHHHHHHHHhhcccchhhc
Confidence 11 23345566788898888888887777777665443221 1222 23333334443222221222
Q ss_pred cchhhhcCCCchhHHHHHHHHHHHh---CCChhhhHhhhHHHHHHhcCCC--CHHHHH-----H-HHHHHHHHHhhccc-
Q 000049 2040 ILPKLVHLPLSAFNAHALGALAEVA---GPGLNFHLGTILPALLSAMGDD--DMDVQS-----L-AKEAAETVTLVIDE- 2107 (2629)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~~La~~~---g~~l~~~l~~il~~Ll~~L~~~--~~~vr~-----~-a~~al~~l~~~~~~- 2107 (2629)
.....-.|.. ...++..|.-.- ...-...+..++..++....++ ...++. + ..+++. ++..++.
T Consensus 248 Tyy~vP~PWL---~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e 323 (938)
T KOG1077|consen 248 TYYFVPAPWL---QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE 323 (938)
T ss_pred eeecCCChHH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc
Confidence 1111111111 122222221110 1112223444455555544321 112221 1 122332 2223343
Q ss_pred -ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcC
Q 000049 2108 -EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2108 -~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
+-+...+..|.+.+.+.....|..+++.+..++.... -.+.+..-...++..+. +.|..+|..|.+.|-.++...
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~- 400 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS- 400 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh-
Confidence 3367778888888888888999999888888875421 11122223556677777 888889988888877776421
Q ss_pred cccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh
Q 000049 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL 2265 (2629)
Q Consensus 2186 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l 2265 (2629)
....|+.-+++.|.+.+...|+....-++-+++... ..+
T Consensus 401 ----------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy 439 (938)
T KOG1077|consen 401 ----------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDY 439 (938)
T ss_pred ----------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCc
Confidence 223345556666777777888887777777776653 344
Q ss_pred hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH--
Q 000049 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS-- 2341 (2629)
Q Consensus 2266 ~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l~-- 2341 (2629)
.=|+..+ --|+|+.++..++++=.-.++.+. -...+.+| -..++...|+.+ ++.+-..++..||.+.
T Consensus 440 ~WyVdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~y---aak~~fe~Lq~~a~hE~mVKvggyiLGEfg~L 510 (938)
T KOG1077|consen 440 SWYVDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGY---AAKRLFEYLQKPACHENMVKVGGYILGEFGNL 510 (938)
T ss_pred chhHHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHH---HHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhh
Confidence 4455443 457787776544444222211110 01111111 122334445554 6777777888888773
Q ss_pred -hccCChhH--HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 2342 -ALSTRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2629)
Q Consensus 2342 -~~~~~~~~--ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2629)
.-+|+..+ .+.-+.+.+....+..|...+..+-.++... ++....|+.++....+.-|.+++.-+.+-|.
T Consensus 511 Ia~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 511 IADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred hcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 33455443 3444555555556666766666666665432 4556677777666655567777766666554
No 90
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.89 E-value=0.00075 Score=91.53 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=171.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
..+-+-+...+.+..+..|..|++.+..++..-+ ....+-...+...++.+.....+-.+...++.+|..++.+++..+
T Consensus 252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 3466778888889999999999999999987655 234444456667777776654577788899999999999999999
Q ss_pred cCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC-CCcCh
Q 000049 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG-KSVSS 2386 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g-~~~~~ 2386 (2629)
++|.-.+.+.|+.++.+....+|..+..++-.+.. ...++.+.+.++..++...++.+......+...+...+ .....
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 99999999999999999999999999999888766 45678899999999999999999999999999998887 44445
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000049 2387 AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2629)
Q Consensus 2387 ~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2629)
.....+...+..+..|.+..||.++.++++.+.+.++++.+..++..+
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 677888888888999999999999999999999999987766666644
No 91
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.39 Score=65.95 Aligned_cols=181 Identities=18% Similarity=0.281 Sum_probs=125.0
Q ss_pred chhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh
Q 000049 2227 LQPLLPIFLQGLIS----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~----~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~ 2302 (2629)
+..+.|++.++..+ ++|+.+.+|..+++++.-... .-... -.+-|+.++....++-+|..+.-++|.+.-+
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-~fces----~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-EFCES----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-HHHHH----HHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 34477888888844 579999999999999874332 22222 3445678887666788999999999999999
Q ss_pred cCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc-CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2629)
Q Consensus 2303 ~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~-~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2629)
.|..+.||.+ .+...|.|++..||..|...|.+|+--. =++..+++++.-.+.+++.+++.-+=...+++-.+.
T Consensus 992 fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~- 1066 (1251)
T KOG0414|consen 992 FPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG- 1066 (1251)
T ss_pred cccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-
Confidence 8887777655 4566889999999999999999985421 245678899999999999999888877777777654
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
..+ -...+.|+.-|.+. .=..+..+...-..||.+-
T Consensus 1067 n~i-ynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1067 NTI-YNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred cch-hhhchHHHHhhccC-cccchhhHHHHHHHHHHhc
Confidence 221 22334444333322 1123444444444444443
No 92
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.81 E-value=0.001 Score=81.32 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~ 1412 (2629)
...++..++..+.+++....|.+|...|-.+...-+-.... ...++..+.+.+.+..+...|..|+..++.+++.=+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45677777777777666788899988887766533322222 1256667777887755888899999999999988777
Q ss_pred CchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc-
Q 000049 1413 LFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2629)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p- 1490 (2629)
.|.++....+..++..-.|.++ .+|.++.+|+..+.+.++-..+..+-|.++. .+...-..++..+..+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 7889999899999999998876 5566667778888878777788877777666 233333345557777776654
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
+.+...++++.|.+++..+.+...||+.|+.||-.+...++-.++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 4577788999999999999999999999999999999888844443
No 93
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.80 E-value=0.34 Score=64.15 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhhc-CCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2470 FLSILDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2470 ~~~i~~~l~~~~~-~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
....++.+.+.+. ++...+|.|.+.|||++..+-. .-....+|.+...|.|++.-|||.++..|..+-++..
T Consensus 966 aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-------am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 966 AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-------AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-------HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 3446666666654 4567899999999999876642 2356677888888999999999999999988887432
Q ss_pred hhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHHHHHHHh
Q 000049 2549 SAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2549 ~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l 2601 (2629)
--++- ..++-.+. .+-|.+..|+..|+-++.++|+..+..-.++.|-++|
T Consensus 1039 vKw~G--~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1039 VKWNG--ELFIRFML-ALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred hhcch--hhHHHHHH-HHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 11111 11223323 3457888899999999999999999888888888887
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0012 Score=83.40 Aligned_cols=226 Identities=20% Similarity=0.198 Sum_probs=145.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh---------hc
Q 000049 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2629)
Q Consensus 1701 l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~---------~~ 1771 (2629)
+...+.+.+..||..++..+-.+.. |..+ -..+.....+.++|++++||.+|++.+...-+.++ .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 3344556778888888888777766 3211 12355667778889999999999887766555441 12
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHh------------h-c------------------C--CCccccccC-
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK------------V-A------------------G--TSGKALLEG- 1817 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~------------~-~------------------~--~~~k~~~~~- 1817 (2629)
..+..+..+-..+.|..|.+|..+.+++|.+=.. . + | .+||.+..+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 3455666777888899999999998888875210 0 0 0 011111000
Q ss_pred CCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCC
Q 000049 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2629)
Q Consensus 1818 ~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~ 1897 (2629)
.++++++.. ..++.. | -..++.-++.|.-.+||.+|+..++.++.+.|.. -...+..|+..++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccH
Confidence 001101000 001110 0 0112223467888899999999999999887752 345567788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 000049 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~ 1948 (2629)
...+|..|..+|..+.... .+-...++.+...+.|.++++|.+.-.-|+
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999988763 344566777788888999999988665554
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.76 E-value=0.0026 Score=81.45 Aligned_cols=145 Identities=16% Similarity=0.033 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
+.+...++|.++.+|..+..+++.+... ..++.|...+.|.++.||..|+.+++.+.. +..
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------~~A 210 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-------RLA 210 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------HhH
Confidence 3455566778889999999999887542 245667777999999999999999876532 222
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
.+.+.......... .+......++ ..|.. ..++.+...++++. +|..++.+++.+.. +..
T Consensus 211 ~~~l~~~~~~~g~~-~~~~l~~~la----l~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~a 270 (410)
T TIGR02270 211 WGVCRRFQVLEGGP-HRQRLLVLLA----VAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGD----------VEA 270 (410)
T ss_pred HHHHHHHHhccCcc-HHHHHHHHHH----hCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cch
Confidence 33333322222222 2222221111 11322 45556666666543 89999988886543 347
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHH
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVL 1764 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~i 1764 (2629)
++.++..+.|+. ++..|-+++..|
T Consensus 271 v~~L~~~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 271 APWCLEAMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HHHHHHHhcCcH--HHHHHHHHHHHh
Confidence 788888887754 887777777665
No 96
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.74 E-value=0.033 Score=75.51 Aligned_cols=371 Identities=15% Similarity=0.157 Sum_probs=203.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH
Q 000049 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK 1457 (2629)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~ 1457 (2629)
..+..+++.+ +...| .++..+..+++...-...-.-..+++.+..++...+..+.-.+...++.+.-.-... .-.
T Consensus 253 kk~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444455443 44445 556667777765432111122368888899998888888777777777664321111 125
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-h--
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E-- 1534 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~-- 1534 (2629)
.++|.+...+.+++-.....++.+|.++++...-...-.-.+++|.+..++.|++ .+..|...|.+++..-... .
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 6899999999988888899999999999875322211112568899999998754 5566788888877532222 1
Q ss_pred HHhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCCh-hhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC
Q 000049 1535 IASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDA-PSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2629)
Q Consensus 1535 i~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~-~~l-~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2629)
....+|.+.+.+. .++..+. +.+..+........... -.- ..+-..+.+.++.+++ .....+.|++..-+..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 1456777777653 3444443 22222221000000000 000 1112222333333332 2345666776542111
Q ss_pred -CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhccCCC-hHHHHHHHHH
Q 000049 1611 -KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQG 1681 (2629)
Q Consensus 1611 -~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~-----~~--~~ll~~Ll~~L~~~~~-~~~R~~a~~~ 1681 (2629)
..+.+|+..++ ..+...+. ......|+|.++.-.-++ .+ ..++|++.+.|..... +.....+...
T Consensus 485 k~~f~~~i~~L~----~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 485 KELFVDFIGDLA----KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHH----HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 12334433333 33443322 256777777777643222 12 3688999988875533 2244455555
Q ss_pred HHHHHHhhChhH-H--HhHhHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHH
Q 000049 1682 LSEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVR 1754 (2629)
Q Consensus 1682 L~~i~~~~g~~~-l--~~llp~l~~~l~~~--~~~vR~~a~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR 1754 (2629)
+|.++..-.... + ..+++.++..++.. +.+.--..+.+|..+... +......+ .++...++..+.|.+..||
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 666554221111 1 35667777766543 445444555556555543 22212122 3477788889999999999
Q ss_pred HHHHHHHHHHHH
Q 000049 1755 DAALGAGHVLVE 1766 (2629)
Q Consensus 1755 ~~al~al~~iv~ 1766 (2629)
..+-.++..+.+
T Consensus 638 ~~~d~~Ldii~e 649 (708)
T PF05804_consen 638 KVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHH
Confidence 998888776654
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.71 E-value=0.0039 Score=79.85 Aligned_cols=209 Identities=17% Similarity=0.069 Sum_probs=128.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2629)
++.+.+.+.+. +..+|.++..+|+.+- -....+.+...++++++.||.++..++...- ..-
T Consensus 88 ~~~L~~~L~d~-~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~ 148 (410)
T TIGR02270 88 LRSVLAVLQAG-PEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDP 148 (410)
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cCh
Confidence 45566666655 5666776666555422 1244555666667777777776665544421 112
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHH
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2629)
.+.+...|.+.+..++..++.+||.+.. ...+|.|...+.|.++.||.+|..++..++. + .-+
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~ 211 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAW 211 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHH
Confidence 3455556667777777777777776643 3455667778999999999999999988864 2 112
Q ss_pred HHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh
Q 000049 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2629)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2629)
+.+.....++....+..+...... . . -...++.|...+++. .+|..+..++|.+. ++ .
T Consensus 212 ~~l~~~~~~~g~~~~~~l~~~lal--~---~---~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~ 269 (410)
T TIGR02270 212 GVCRRFQVLEGGPHRQRLLVLLAV--A---G---GPDAQAWLRELLQAA--ATRREALRAVGLVG----DV--------E 269 (410)
T ss_pred HHHHHHHhccCccHHHHHHHHHHh--C---C---chhHHHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------c
Confidence 333333334433333222211110 0 1 114566677777765 38999999988763 32 3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
.++.|...+.|+. +|..|..++..+..
T Consensus 270 av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 270 AAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred hHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 6777788887753 99999999988765
No 98
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00086 Score=84.47 Aligned_cols=279 Identities=21% Similarity=0.170 Sum_probs=166.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC-CCc----ChHHHHHH
Q 000049 2318 FIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG-KSV----SSAVKIRV 2392 (2629)
Q Consensus 2318 ~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g-~~~----~~~~~~~i 2392 (2629)
+....+|.+..||..|+.+|-.|...-.--.......++.+.+.+..||.++++.+.-.-.... +.. .....+..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 3445566788999999999877744212224567778888888889999999888876655542 211 13567788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH-HHhhcCCCCchhhHhHHHHHHHHH---------hhCCc
Q 000049 2393 YSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE-LLNLASSPSWAARHGSVLVFATFL---------RHNPS 2462 (2629)
Q Consensus 2393 ~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~l---------~~~p~ 2462 (2629)
+.-+...+.|.+..+|..|++.||.+..... +-+.+.+.+ ++..+ .-|...+-.-..+.+-. .+.|.
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~l--RRkr~ahkrpk~l~s~GewSsGk~~~advps 359 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRL--RRKRTAHKRPKALYSSGEWSSGKEWNADVPS 359 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhh--hhhhhcccchHHHHhcCCcccCccccccCch
Confidence 8888889999999999999999999876443 333333332 22200 00000000011111111 01111
Q ss_pred cccCCh----hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 000049 2463 AISMSP----LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALS 2538 (2629)
Q Consensus 2463 ~~~~~~----~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~ 2538 (2629)
...+.. ........++.++.|+-.++|.+|+.+++.+... .|+ .....+.-++-.+||+..+||..|..
T Consensus 360 ee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~---FA~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 360 EEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPG---FAVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred hhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCC---cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 110000 0001234455566666678999999999998765 353 45566777777788999999999999
Q ss_pred HHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHHHHHHHhhhhhhhhhccCCCCCC
Q 000049 2539 ALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHSD 2617 (2629)
Q Consensus 2539 ~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 2617 (2629)
++..++.+ - .++ .+-++.+.+++.|.+..||.+.- =++...++.+ +++-+++..-....|.+.|.+.|
T Consensus 433 aL~~Is~~-l-~i~---eeql~~il~~L~D~s~dvRe~l~-elL~~~~~~d-----~~~i~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 433 ALTMISVH-L-AIR---EEQLRQILESLEDRSVDVREALR-ELLKNARVSD-----LECIDMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred HHHHHHHH-h-eec---HHHHHHHHHHHHhcCHHHHHHHH-HHHHhcCCCc-----HHHHHHHHHHHHHHhhhCCCCcH
Confidence 99999986 1 122 34466677777777777775543 2222233322 23444443334455555555544
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.70 E-value=0.0035 Score=80.44 Aligned_cols=216 Identities=25% Similarity=0.301 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.++.+...+.+. ++.+|..|..+++.+.. ...+|.++..+. |++..||..+..++..+.. .
T Consensus 75 av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------~ 136 (335)
T COG1413 75 AVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGD-------E 136 (335)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------h
Confidence 444455555544 45555555553333211 123344444444 5566666665555555422 1
Q ss_pred hhHHHHHhhhccC------------ChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1458 LVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~------------~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
..++.+++.+.+. .|..|..+...++.+.. +...+.+.+.+.|....||.+|..+|+.
T Consensus 137 ~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~ 206 (335)
T COG1413 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQ 206 (335)
T ss_pred hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHH
Confidence 2233333333332 24667777777776643 4456777888999999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
++... ..+.+.+...+.+++..+| .++..++.. ......+.+..++.+.++.++..+....+..
T Consensus 207 ~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~- 271 (335)
T COG1413 207 LGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEEAVDALAKALEDEDVILALLAAAALGAL- 271 (335)
T ss_pred hhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------CcchhHHHHHHHHhccchHHHHHHHHHhccc-
Confidence 87542 3455677777778777776 455554321 1223445566666666666665555444411
Q ss_pred hhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
. .......+...+.|..+.+|..+...++....
T Consensus 272 ---~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 272 ---D--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred ---C--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 0 11123444555666677777777777766544
No 100
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.69 E-value=0.006 Score=78.30 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=136.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
..++.++..+.|++..||..+...++.+ +-+..+|.+...+.+.++.+|..+..+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4677788889999999999887775544 557889999999999999999999998887642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC------------hhHH-HHHHHHHhccc
Q 000049 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2629)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2629)
-+|.+.+++. |.+..||..|..+|+.+...-. ++.++..+.++. ..+| .+...++..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a-------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERA-------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh-------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5677777777 7999999999999999875321 344445555443 1233 233333210
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566677777777788888887777765421 2356677777788888888888777765
Q ss_pred HHhhhCCCCchhhHHHHHHHhccCC
Q 000049 1646 LIRGMGEENFPDLVSWLLDALKSDN 1670 (2629)
Q Consensus 1646 l~~~~g~~~~~~ll~~Ll~~L~~~~ 1670 (2629)
+.. ....+.+...+.+..
T Consensus 240 ~~~-------~~~~~~l~~~l~~~~ 257 (335)
T COG1413 240 IGD-------EEAVDALAKALEDED 257 (335)
T ss_pred cCc-------chhHHHHHHHHhccc
Confidence 432 333444555555443
No 101
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.41 Score=64.69 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
++.+++.+++...+.+.+.|...---|-...+.-+ .-.-..++.+..-+.++++.+|..+...++.+ ...+.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKEL 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHH
Confidence 56666666777777788777766555544443322 22223456677788999999999998888764 23456
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
++.+++.+++++.|+++.||..|+-|+..+++
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999885
No 102
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.08 Score=69.19 Aligned_cols=282 Identities=18% Similarity=0.129 Sum_probs=161.7
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2629)
.+..++.+-+-.++.+....+-..|+.++..+....+.++.| .+..|-.+++.+...+|-+|...|+.+....|..
T Consensus 241 ~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 345566777777788888888888888888776655555555 5667777788888889999999999998877653
Q ss_pred c------ccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2188 V------QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2629)
Q Consensus 2188 ~------l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~ 2261 (2629)
. ++.++....+.+.+..-.... ..|. ...+..++..+.....+-+.+-+.....++..++...+
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLL-KTG~---------e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLL-KTGT---------ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHH-Hhcc---------hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1 222222111111111000000 0000 01112222221111111233333334444444444443
Q ss_pred hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2262 EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2262 ~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
. -+ ..+...|.++|.+...-+-|.++.+++..++...+..=.+-+..|...+-.| +.+.-+..-|+.+.
T Consensus 387 ~--k~---~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG 455 (865)
T KOG1078|consen 387 R--KH---TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLG 455 (865)
T ss_pred H--HH---HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHh
Confidence 1 01 1122334444544445566777777777777655544334444444444333 22334444455553
Q ss_pred h---ccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000049 2342 A---LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIM 2418 (2629)
Q Consensus 2342 ~---~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L 2418 (2629)
. ..+.-..|+..+.+.+--.+..+|.+++.||..+. ++. +...+.|..++..++.|+++.+|..|...+..+
T Consensus 456 ~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 456 KEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred ccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 3 23445678888887776667889999999998877 222 335678888899999999999999988887766
Q ss_pred H
Q 000049 2419 S 2419 (2629)
Q Consensus 2419 ~ 2419 (2629)
-
T Consensus 531 ~ 531 (865)
T KOG1078|consen 531 E 531 (865)
T ss_pred h
Confidence 5
No 103
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.047 Score=67.90 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc-hh
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER-VL 1921 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~-~l 1921 (2629)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-| .+.++...+..+|..+.++.... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 34444445568999999999999999999999999999999999999988875 45788888999998888776543 55
Q ss_pred hhHHHHHh---hhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHH---HHHHhcCCcHHHHHHH
Q 000049 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT---IRTALCDSILEVRESA 1985 (2629)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~---l~~~L~d~d~~VR~~A 1985 (2629)
++++++-. ....+.+++.|.++...+|.+....|+..-..|.+++... +.-.++|+++.|-.+.
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 66666543 4566889999999999999887777665433344444422 2346788888765443
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.47 Score=64.20 Aligned_cols=166 Identities=18% Similarity=0.232 Sum_probs=117.5
Q ss_pred hccCChhhhHHHHH-HHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhc
Q 000049 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2629)
Q Consensus 1467 L~~~~w~~r~~a~~-~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~ 1545 (2629)
+.+++.+.|..|+. ++..|..+-. ++.++|.+++.....+.++++-.--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 55556666666655 4456665432 45566666666666688999988888888887533 2335567888899
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhh-hHHH
Q 000049 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2629)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2629)
++||++.+| .|+..+.... ....+..+++.+.+.+.|+++.||+.|+.++..+.+. +. + -|.+. +...
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~-~---l~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK-D---LYHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH-h---hhhcccHHHH
Confidence 999999999 5777664311 2345567889999999999999999999999998875 21 1 12333 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+..++.|.+|.|-..|..++..+-..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67778899999988888888776654
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.62 E-value=4.8e-05 Score=68.14 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
|++|..++.+||.++...+..+.+++++++|.|..+++|+++.||.+|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
No 106
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.23 Score=65.24 Aligned_cols=313 Identities=15% Similarity=0.140 Sum_probs=157.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHH
Q 000049 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2629)
Q Consensus 1383 L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2629)
+.+..+++ |..-|...-.+++.++....+ +.-+...+..-+...++..|-.|..++..+.....-+++..++..
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~ised-----viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kq 142 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISED-----VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQ 142 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccchh-----hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHh
Confidence 44445554 455555555555554432221 223334444444445566676666666665443333333333332
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHh--hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
. +-+....+.. ..++..+.. ...........++.+ ...+.+..||..|..-|.++-+..+ -.+..++.
T Consensus 143 a---ivd~~~avSs--aalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~ 212 (865)
T KOG1078|consen 143 A---IVDKNPAVSS--AALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQ 212 (865)
T ss_pred H---eeccccccch--HHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHH
Confidence 2 2222222211 122222221 122223322233322 2233355777777777766654211 11233333
Q ss_pred HHHh-ccCCCChh---HHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1541 TLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1541 ~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+.. .+.+|-.. +|.+.+.+- . .......+.|.+...+.++...+-..++..+..+... .+.++.|
T Consensus 213 ~~~~~~~~~~~A~~~lir~~~~~l~------~-~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p- 282 (865)
T KOG1078|consen 213 KFTRGSLKSPLAVCMLIRIASELLK------E-NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP- 282 (865)
T ss_pred HHccccccchhHHHHHHHHHHHHhh------h-cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch-
Confidence 3332 12222111 121222111 1 1333456778888888888888888888888877654 2234444
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHh
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ 1696 (2629)
-+..+...+..+.+-+|-+|.+.|..++...+.... -.-..| +.+-++ ..|.-+..++..+.+....+..+.
T Consensus 283 ---avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~el-E~lItd---~NrsIat~AITtLLKTG~e~sv~r 354 (865)
T KOG1078|consen 283 ---AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLDL-ESLITD---SNRSIATLAITTLLKTGTESSVDR 354 (865)
T ss_pred ---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchhH-Hhhhcc---cccchhHHHHHHHHHhcchhHHHH
Confidence 566677778889999999999999999987654310 000111 111122 246666667777777655555566
Q ss_pred HhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
++..+-....+-+.+.+.....++..++..++.
T Consensus 355 Lm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 355 LMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 665555555555555555555566666655554
No 107
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.11 Score=67.19 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC-
Q 000049 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2629)
|.+..-|+.-++.++.++.++|. +-..+++.+++.+.|.++..-......+.+.+++++. ....++..+...+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 34455666677777777777764 4456667777888998888777777778888777653 22223333333222
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 000049 1934 DPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~ 1952 (2629)
-+...+-.++.+.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1345566677777776543
No 108
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.57 E-value=0.00025 Score=77.64 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=89.9
Q ss_pred hhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHH
Q 000049 2480 SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFG 2559 (2629)
Q Consensus 2480 ~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~ 2559 (2629)
|..|++.++|++|..+++.++..+..+ ..+.+++..+..|+.| +.|+|.++..++..++..+|..+.++++.++
T Consensus 35 h~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~ 108 (169)
T PF08623_consen 35 HKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLV 108 (169)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTH
T ss_pred eeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 567888999999999999999987644 4588999999999999 9999999999999999999999999999999
Q ss_pred HHHHhhhcC--Ccchhhhh----------HHHHHHHH-hccccCchhHHHHHHHhh
Q 000049 2560 PALAECLKD--GSTPVRLA----------AERCAVHA-FQLTRGSEYIQGAQKFIT 2602 (2629)
Q Consensus 2560 p~l~~~~~~--~~~~vk~a----------ae~a~~~l-~~~~~~~~~~~~~~~~l~ 2602 (2629)
+++-+.+.. +...||+- +.|+..++ ..++..+...+.+.+|+.
T Consensus 109 ~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 109 EPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp HHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 999888643 33445544 44788888 677665554445666653
No 109
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.62 Score=60.31 Aligned_cols=351 Identities=15% Similarity=0.196 Sum_probs=190.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHH
Q 000049 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLL 1426 (2629)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~-~~~v~~ilp~ll 1426 (2629)
+++.+.++..+...+..++..- .+..+ .++..+++-+.+. |+.....|+.+++.+. ++.+ +.|..+ +|.++
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-~dl~k--lvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~D-I~KlL 155 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-SDLMK--LVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADD-IPKLL 155 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-hHHHH--HHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhh-hHHHH
Confidence 4556777766666666666432 11111 3444444444444 4555545555555443 3322 223223 23332
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1427 VAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
. -++..+.||+.+.-|+-.+....++-. .......++..|++.+.++..++..++..++...|+....+++.-+..+.
T Consensus 156 v-S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 156 V-SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS 234 (938)
T ss_pred h-CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH
Confidence 2 267788999999988888887643321 13455666777888888888889999999998888887777766665555
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC-hhHH----HHHHHHHhccccccCChhhhhhHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK----YSLDILLQTTFVNTVDAPSLALLVPI 1580 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~-~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2629)
..........+... --.+++|+++--+=.++...-.|. ..+| ++++.+..
T Consensus 235 riv~~~~t~~qdYT-------yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn------------------ 289 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYT-------YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN------------------ 289 (938)
T ss_pred HHHhhcccchhhce-------eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh------------------
Confidence 44321111111000 001223333211111112111111 1111 22222211
Q ss_pred HHHhhcC----CCH---HHHH-HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1581 VHRGLRE----RSA---ETKK-KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1581 L~~~L~d----~~~---~vr~-~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
..++ ++. ..+. ...+++.-... ++.. ...+...+..|-+.+.+....+|--|.+.+..++..-..
T Consensus 290 ---k~~~~~~~k~vq~~na~naVLFeaI~l~~h-~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s 362 (938)
T KOG1077|consen 290 ---KAQEPPKSKKVQHSNAKNAVLFEAISLAIH-LDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS 362 (938)
T ss_pred ---ccccCccccchHhhhhHHHHHHHHHHHHHH-cCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch
Confidence 1110 000 1111 11222322222 2211 123455666677777788889999999888888775110
Q ss_pred -CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1653 -ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1653 -~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
+....-...++..|+.+.+..+|+.+..-|=.+|.. +..+.++..+++.+...+..+|+....=..-+++.+..++
T Consensus 363 ~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy 439 (938)
T KOG1077|consen 363 IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY 439 (938)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc
Confidence 112223455666777666667888877766666543 3345677778888888899999988877778888777777
Q ss_pred HhhHHhHHHHH
Q 000049 1732 QNYLQQVLPAI 1742 (2629)
Q Consensus 1732 ~p~l~~ii~~l 1742 (2629)
.=|+.-++..+
T Consensus 440 ~WyVdviLqLi 450 (938)
T KOG1077|consen 440 SWYVDVILQLI 450 (938)
T ss_pred chhHHHHHHHH
Confidence 66665555443
No 110
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.49 E-value=2.2 Score=65.17 Aligned_cols=391 Identities=19% Similarity=0.245 Sum_probs=196.8
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER--- 1919 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~--- 1919 (2629)
.++..+.....|....+-.++..+.+.++...+.....+...+++.+.+.+.+ .+...|.++..+++.+....|-.
T Consensus 648 ~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p 727 (2341)
T KOG0891|consen 648 PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDP 727 (2341)
T ss_pred chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecc
Confidence 34444555567777888899999999999987765655555666666666553 45677889999999988766533
Q ss_pred --hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Q 000049 1920 --VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS 1995 (2629)
Q Consensus 1920 --~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~ 1995 (2629)
..|.++..+...+.. ....+|..+...++.. |..+...+.........+..... .... ....+...
T Consensus 728 ~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~----g~~d~~~~~~~~~~~~~~~~~~~~k~~~------~~~~~~~~ 797 (2341)
T KOG0891|consen 728 YLDYPELLDILINILKTEQSSTIRREAIRLLGLL----GALDPYKHKVTEGTSASKISSEQIKSDI------DISLLESG 797 (2341)
T ss_pred cccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh----cccchhHHHHHhhhhhHhhhhccccccc------hHHHHHhh
Confidence 245666666554443 2355666666655522 21111111111111011111110 0000 00000000
Q ss_pred hChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCch---hHHHHHHHHHHHhCCChhhhH
Q 000049 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHL 2072 (2629)
Q Consensus 1996 ~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~---~~~~aL~~La~~~g~~l~~~l 2072 (2629)
..... ++++|. ..+..+..++ .++.... ....+...+....|.....++
T Consensus 798 ~~~~~-~e~~p~------------v~I~~l~~~l---------------~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l 849 (2341)
T KOG0891|consen 798 VNPSN-DEYYPA------------VTIHALMGIL---------------KDPSLSIHHTAVAQAIMHIFQSLGLKCVLFL 849 (2341)
T ss_pred hhhhh-hhhhhH------------HHHHHHhhhh---------------hhhhhHHHHHHhhhchhHHHHhhccchhhhH
Confidence 00000 222221 1111111110 0000000 123344445556678888999
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChh---HHHHHHHHHHHHHHhchhhhhh
Q 000049 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS---IRRSSAYLIGYFYKNSKLYLVD 2149 (2629)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~---vR~~a~~~L~~l~~~~~~~~~~ 2149 (2629)
++++|.++..........++....-+... ......+..++++.+...+++.++. +.......+..+....+..+..
T Consensus 850 ~qv~~~~~~~~r~~~~~~~~f~~~q~~~~-~~~~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~ 928 (2341)
T KOG0891|consen 850 DQVIPTLIDVMRSCPPNLREFYFQQLTSL-VAIVRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKK 928 (2341)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhhhh-hhccchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999998887654444444322111111 1122344445555555544443321 1111122222222233334444
Q ss_pred hHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccch
Q 000049 2150 EAPNMISTLIVLLSDSDST-TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2629)
Q Consensus 2150 ~~~~il~~Ll~ll~d~d~~-V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~ 2228 (2629)
|++..+...+.-+ ..+.. .+.... .+.+.+. .-|-+...+..
T Consensus 929 ~l~~~~~~~l~~~-~~~~s~~~~~~~--------------------~~~~~~~----------------~~~~~~~~~~h 971 (2341)
T KOG0891|consen 929 YLPELLPTMLTVL-QHDKSKDRVVSR--------------------KVLQSLQ----------------KFGSNLEQYLH 971 (2341)
T ss_pred hhhhhccchheee-cccccchHHHHH--------------------HhhHHHH----------------hcCccHHhhHh
Confidence 4444443333322 11100 000000 0000000 00111112333
Q ss_pred hhHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCC
Q 000049 2229 PLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2629)
Q Consensus 2229 ~ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2629)
.++|.+++.+.+. ....+..+..+++.+... .++..|...+..++.|.+... .+.+..++.+++.+....+..
T Consensus 972 l~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~---~~~~~~~s~i~~~~~r~l~~s--~el~~~~~~~l~~l~~~~~~~ 1046 (2341)
T KOG0891|consen 972 LLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQ---VDLSEYASRIIHPLVRVLSSS--PELRDVIMDTLIALVKQLGKD 1046 (2341)
T ss_pred hhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHhhcCc
Confidence 4566666666655 455677888888888764 356778888889999998764 889999999999999999988
Q ss_pred ccCchHHHH
Q 000049 2307 LKPFLPQLQ 2315 (2629)
Q Consensus 2307 l~p~lp~L~ 2315 (2629)
+.-|.|-+.
T Consensus 1047 ~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1047 FAIFIPMVN 1055 (2341)
T ss_pred eeehHHHHH
Confidence 887777665
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.1 Score=65.06 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh--hhcc
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS--QCLP 1498 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~--~~L~ 1498 (2629)
..+.+...+.|+.- ..-....+...|....+-....++..+.....+..|..|.+-...+..+.. |..+. ..+.
T Consensus 182 e~~~~w~qls~~~~--h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~ 257 (533)
T KOG2032|consen 182 EVSRRWSQLSDNDI--HRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLG 257 (533)
T ss_pred cccchhhhcccCcc--cHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhC--cccccccccHH
Confidence 34444555555522 222222333334433333345566656666667778877766666655543 33332 3356
Q ss_pred chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
+++..+..-..|++..+|..|+.+|++.++..++. +...++..++..+.|+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~------------------------- 312 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL------------------------- 312 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC-------------------------
Confidence 67777777788999999999999999999875432 22333444444443332
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1576 ~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
+.+|.-.+..++..+..... ..++.+|+-.+.-.+.....+.++++|..++..+|.++...|..
T Consensus 313 -------------~~~V~leam~~Lt~v~~~~~-~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 313 -------------NEEVQLEAMKCLTMVLEKAS-NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred -------------ccHHHHHHHHHHHHHHHhhh-hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 23444445555554444432 25788888888888999999999999999999999999987754
No 112
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.16 Score=59.39 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcc-chhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH----HHHHHHHHHHhcCCc
Q 000049 1904 VAGRALGELVRKLGE-RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2629)
Q Consensus 1904 ~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~d 1978 (2629)
....||.++.+...+ ...|.+.|-++.++..++..++.-+|..++.+++.+......+.+ ..+++.+..++...|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367778877766543 477999999999999999999999999999999988765554433 578888999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~ 1993 (2629)
.+|..+|.+.+..+.
T Consensus 142 deVAkAAiesikria 156 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIA 156 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888765
No 113
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.44 E-value=0.0058 Score=75.04 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=145.0
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000049 2234 FLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2629)
Q Consensus 2234 ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2629)
+++++.+. ..+.+..|..-|-.+...-+-.....|..+|.-.++.++++..+...|..+|..|..+++.-+..+..+..
T Consensus 291 ~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE 370 (516)
T KOG2956|consen 291 LLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE 370 (516)
T ss_pred HHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH
Confidence 44444433 34555556554444443333345677788888889999999768889999999999999998888888888
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHH
Q 000049 2313 QLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391 (2629)
Q Consensus 2313 ~L~~~~~k~L~d~~-~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~ 2391 (2629)
..+..++.+-.|++ +.+|.++--|+-.+..+.|- .-+.-+...+.+.|...-..+++.+..+++....+..-..++.
T Consensus 371 ~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 371 IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 88888888888984 55555555555555555542 2334444445555656666777888888887766554577888
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 000049 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2629)
Q Consensus 2392 i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2629)
|.+.+.+.+++.+..||..+..||-++...++.+++.+++..+
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8999999999999999999999999999999977777777643
No 114
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=1.1 Score=59.93 Aligned_cols=265 Identities=17% Similarity=0.216 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCC-----hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc-
Q 000049 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2629)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2629)
-|+...+.+..+.+.+++.....+...+-+.+.+.+ |..-..++-.+..+++....... .-+|.+++.+-
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccc
Confidence 456666666666666665544555555555555544 87777777777777765443332 33555555432
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH
Q 000049 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2629)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2629)
-.++..-..+...++.++..+++ | ++...+|. +.+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~---------------------------------------L~~ 556 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPL---------------------------------------LFQ 556 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHH---------------------------------------HHH
Confidence 23666666777777777766654 2 33444444 444
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000049 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2629)
Q Consensus 1584 ~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ 1657 (2629)
++... +.-..+...+..+|+. .+.++.||.+.++..+...+.. -.+..|....+++|.+......+ ++..
T Consensus 557 ~Lh~s--k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 557 GLHNS--KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred HhcCc--hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 44322 2223344447777774 4568999999999999988874 35678999999999999887733 4455
Q ss_pred hHHHHHHHhcc----CCC-h-HHHHHHH--HHHHHHHHhhChh-----------------------HHHhHhHHHHHhhc
Q 000049 1658 LVSWLLDALKS----DNS-N-VERSGAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2629)
Q Consensus 1658 ll~~Ll~~L~~----~~~-~-~~R~~a~--~~L~~i~~~~g~~-----------------------~l~~llp~l~~~l~ 1706 (2629)
++..++..++. +-. . ..+..++ .+++.+...+..+ ...+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 55555554432 111 1 1222222 2244444332110 11334444444333
Q ss_pred --CCChhhHHHHHHHHHHhhhhhccch-HhhHHhHHHHHHhhcC
Q 000049 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1707 --~~~~~vR~~a~~~l~~L~~~~g~~f-~p~l~~ii~~ll~~L~ 1747 (2629)
.....+-++++..++.=....++.| .|+++++.+.+.....
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 2355666677666665566667778 8999999998888544
No 115
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.012 Score=75.65 Aligned_cols=308 Identities=17% Similarity=0.179 Sum_probs=191.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~i 2154 (2629)
+.+.+-+-|+.+++-+|......+..+ -..+-+.+++|.+...+.+.+.-||..|..+++.+++.. .++.+-.|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 345556678889999998876665443 123558999999999999999999999999999999873 4566666777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccc-------c--------chHHHHHHHHhhhhhhhhhhhcCCccccc
Q 000049 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-------P--------SYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2629)
Q Consensus 2155 l~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l-------~--------~l~~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2629)
+...+. .+.|+....+|.-.|-..-......++ + .+++.+++....
T Consensus 176 i~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~----------------- 236 (948)
T KOG1058|consen 176 IESFLL--TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA----------------- 236 (948)
T ss_pred HHHHHH--hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc-----------------
Confidence 766543 355555666555433222111100111 1 111112111110
Q ss_pred CCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2220 g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
-|..-...+..+...|.+.++.++..|+.+|..+.. .+..+++....+ ++.+-+..+.++|.-.++-|..+
T Consensus 237 ---~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~----i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 237 ---NPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTY----IDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred ---CHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHH----HHHHHhccCcchhhhhHHHHHHH
Confidence 011112244555566666777777777766665542 235666665554 44444434556777777777776
Q ss_pred HHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcC-------CHHHHHHHHHH
Q 000049 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVS-------DAGIREAILTA 2372 (2629)
Q Consensus 2300 ~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~-------d~~vr~~~l~A 2372 (2629)
-.. -+..+..+.--+++.|+.++-+||..+..-.-.|+. +.++..++..|-..+..+ ...-|...+++
T Consensus 308 ~~~----~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 308 KAL----HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred hhh----hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 522 223456677778888999999999988765555543 345666666655544221 14557778888
Q ss_pred HHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
++.+..++ +.+...+++.+.+.+.|.++.....+...+......+|.
T Consensus 383 ih~cav~F-----p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 383 IHACAVKF-----PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHhhcC-----hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 87776553 567788899999999988877665555556666666663
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.31 E-value=0.0075 Score=69.00 Aligned_cols=110 Identities=23% Similarity=0.235 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000049 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2629)
Q Consensus 2242 ~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~ 2321 (2629)
++.+|..+..++|+++...+ ..+.||++. +...+.|. ++.||..++.+|..|+...- -.+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHH
Confidence 36789999999999998887 666777555 46677775 89999999999999987532 22346677788899
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc-cC-ChhHHHHHHHHhhhc
Q 000049 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2629)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~l~~~-~~-~~~~ll~~Ll~~l~~ 2360 (2629)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 467788888887754
No 117
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.26 E-value=1.1 Score=61.41 Aligned_cols=131 Identities=20% Similarity=0.221 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hH--HhHHHHHHhccCCC
Q 000049 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDP 1549 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i--~~lvp~Ll~~l~d~ 1549 (2629)
+.-+.++.+|.++++.......-.-.++++.|.++|+..+.++.-.+...|..++-.-.|. .+ ..++|.|.+.+..+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 3344677889999987655544445789999999999999999999999999987554443 22 57899999999877
Q ss_pred ChhHH-HHHHHHHhccccccCChhhh-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1550 NDHTK-YSLDILLQTTFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l-~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
+.... .++..|..-+|......... ..++|.+...+.+. ..+..+..++.+++.
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM 399 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc
Confidence 66544 57777665455444332222 34678888888765 345567777777764
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.21 E-value=0.018 Score=71.65 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=136.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhh-cChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC--CCc
Q 000049 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2629)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~-~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2629)
+.-.++.+.+.....|+.++..+..+... .-++.+......++..+.+.+... ..+-+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33455666667788999999988887744 333556666777888888888764 34667788899998888866 455
Q ss_pred cCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhccC-Chh------HHHHHHHHh--hhc----------CCHHHH
Q 000049 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST-RVD------PLVGDLLSS--LQV----------SDAGIR 2366 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l~~~~~-~~~------~ll~~Ll~~--l~~----------~d~~vr 2366 (2629)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+.. ..+ ..+..+... .+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 567778888888888886 56788899999998844322 222 222211111 111 125789
Q ss_pred HHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 000049 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
.+++.++.-++...+...........++.|...+++.+-+||.+|+++|+-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987765322456677788888999999999999999999877654
No 119
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.13 E-value=0.002 Score=71.28 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.5
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH---HHhc
Q 000049 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2629)
...++|+|.+|+.....+-+-.|..++.++++..+.+.+.|.+++++.|+.+.++.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 457999999999999999999999999999999566889999999999999999987 899999999999999 6788
Q ss_pred CCCccCchHHHHHHHH
Q 000049 2304 GIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2304 ~~~l~p~lp~L~~~~~ 2319 (2629)
|..+.||..||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999876
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.029 Score=73.63 Aligned_cols=222 Identities=16% Similarity=0.166 Sum_probs=148.3
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHH
Q 000049 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778 (2629)
Q Consensus 1699 p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp 1778 (2629)
...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--+|+++...+++.|+++.++.+..
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e 809 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE 809 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34455667788899999999999988743322122345799999999999999999999999999999888876665555
Q ss_pred HHhhccCCC--chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCc
Q 000049 1779 AVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2629)
Q Consensus 1779 ~l~~~l~d~--~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~ 1856 (2629)
...+.-... +.+++.+ ++++.++...+ +... .++..++.....+..|+
T Consensus 810 ~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~G-----------------------el~~-----~y~~~Li~tfl~gvrep 859 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVG--EAILKVAQALG-----------------------ELVF-----KYKAVLINTFLSGVREP 859 (982)
T ss_pred HHHhcccCCCccceehHH--HHHHHHHHHhc-----------------------cHHH-----HHHHHHHHHHHHhcCCc
Confidence 443322222 3333333 44444432211 0111 23344444444455688
Q ss_pred cHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh-------hHHHHH
Q 000049 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SIIPIL 1928 (2629)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~-------~llp~L 1928 (2629)
+..-|..++..++.++..+...+..++..++..++.... +.+.-+|.+|+..+..+....|...+| .....+
T Consensus 860 d~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 860 DHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred hHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 888899999999999987766666777777777766654 678899999999999999999977665 222333
Q ss_pred hhhcCC-CChhHHHHHHHHHHHH
Q 000049 1929 SRGLKD-PSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1929 ~~~L~d-~~~~vR~~a~~aL~~l 1950 (2629)
....++ ++..+|..+|.++.++
T Consensus 940 ~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 940 LSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHhcCchhHHHHHHHHHHHHH
Confidence 333333 4455677777766654
No 121
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=1.8 Score=56.50 Aligned_cols=226 Identities=17% Similarity=0.142 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHhhh-----chhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHH
Q 000049 1755 DAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2629)
Q Consensus 1755 ~~al~al~~iv~~~~~-----~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~ 1829 (2629)
+..++.+..++..++. +.+..++..+.++...++-.+|..+++++..++.... +
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-----------e---------- 118 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-----------E---------- 118 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-----------c----------
Confidence 4455666666665542 2445577778888888888999999999988763211 0
Q ss_pred HHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2629)
Q Consensus 1830 ~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L 1909 (2629)
.+.+.++.+...+...+.|..+.||..|+-++..+-......=-+....+...+ =+||++++|..|..++
T Consensus 119 -------idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li---qnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 119 -------IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI---QNDPSDEVRRAALSNI 188 (892)
T ss_pred -------cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCCcHHHHHHHHHhh
Confidence 111234445556666678989999999999998886432221112222222211 2489999999998776
Q ss_pred HHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000049 1910 GELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2629)
Q Consensus 1910 ~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2629)
.- -+..+|.+.+..+|-+...|.-+..-+..-+. .... -.+.-+-.+...+.|.+..|+.++..++
T Consensus 189 ~v---------dnsTlp~IveRarDV~~anRrlvY~r~lpkid-~r~l----si~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 189 SV---------DNSTLPCIVERARDVSGANRRLVYERCLPKID-LRSL----SIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred cc---------CcccchhHHHHhhhhhHHHHHHHHHHhhhhhh-hhhh----hHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 31 23445555555566665666554433221111 0001 1234455667789999999999887766
Q ss_pred HHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHH
Q 000049 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL 2029 (2629)
Q Consensus 1990 ~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il 2029 (2629)
.. .++ ...+.-++.+++.|.-+..++.+..++..++
T Consensus 255 l~--~Wl--~~~dgni~ElL~~ldvsnss~vavk~lealf 290 (892)
T KOG2025|consen 255 LS--GWL--RFSDGNILELLERLDVSNSSEVAVKALEALF 290 (892)
T ss_pred HH--HHh--hhccccHHHHHHHhccccchHHHHHHHHHHH
Confidence 43 111 1233446778888877666555555555544
No 122
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=2.3 Score=56.37 Aligned_cols=305 Identities=16% Similarity=0.139 Sum_probs=157.2
Q ss_pred CccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhccc------hhh
Q 000049 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLP 1922 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-----~~~~~~R-~~A~~~L~~lv~~~~~~------~l~ 1922 (2629)
|....+|-+|-.....+..+.+..+-+++-..+....++.. +-+.-.+ -++..+.|.-.-.+.+. ...
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33456788888888888776555433333332222222221 1111122 22223333222222111 123
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH--hChh
Q 000049 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--AGMQ 1999 (2629)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~--~g~~ 1999 (2629)
.++|-+.. -.+...-.|..++..+|+.+..-.+ .+.-+-+...+...+.|. |.-||-.++.++..+.+. +.++
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 44444441 1122344678888888877653222 222244556667788887 778999999999988764 3455
Q ss_pred hhhhhHHHHHHhc-------cCcCchhHHHHHHHHHHhhhccCcCccc------chhhhcCC-----CchhHHHHHHHHH
Q 000049 2000 AIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHI------LPKLVHLP-----LSAFNAHALGALA 2061 (2629)
Q Consensus 2000 ~~~~ilp~Ll~~L-------~~~~~~~~aL~~L~~il~~~~~~ilp~L------ip~L~~~~-----~~~~~~~aL~~La 2061 (2629)
.+-+++|.+...+ +.-+++-..|..+..++...+..+-|+. +|.+=... .+..-..++..+.
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 5666666554333 3334555677777777766555555553 33332211 1111223445555
Q ss_pred HHhCCChhhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 000049 2062 EVAGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2629)
Q Consensus 2062 ~~~g~~l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L 2136 (2629)
...|..-.+..+-++|.+--...-. ..-.-+.+.+.+..++.... .+.+-.+.|.+...+.......| .+...+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 6677665555555555554444322 23345667777777766543 24455666666666643322322 233333
Q ss_pred HHH-HHhchhhhhhhHHHHHHHHHHHhcC
Q 000049 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2137 ~~l-~~~~~~~~~~~~~~il~~Ll~ll~d 2164 (2629)
... .-..+.-+..|...+...+...++|
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2223334456667777777777755
No 123
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.05 E-value=0.003 Score=67.22 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
+++.++..+.++++.+|..+..++..+....+.. .++ .++|.+++.+.+++.+++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6788888889999999999999999987653222 233 789999999999999999999999999998765443332
Q ss_pred c-cchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1497 L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
. .++++.+.+.+++.+.++|+.++++|.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 468999999999999999999999999886
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.33 Score=64.07 Aligned_cols=195 Identities=16% Similarity=0.109 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch---hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS---LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~---l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
.-+.++++.|..+.|......|...|..++.-...+. +.-..++|.|...++++.++....-|+.|+.++++.+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3556677777666455566666666665553222222 2223678889999999888999999999999999999975
Q ss_pred chhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhHH-hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1414 FEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1414 ~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
..-.|. +.+|.++..+- =.--+|-+.+.+++..+...-+....+ .-+-..+.+|+==.-..++.|+.+..+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 544443 47788776553 345578888888888887755544331 122223333321123445667777777776554
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
..-..+.-+.+|.|..+|+..+..+-+.++-|+..++..+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 44445566788999999998888999999999999998765
No 125
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.00 E-value=0.00063 Score=60.92 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2629)
|.+|.+|+.+|+.+++..+..+.+++.+++|.+..++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888889999999999999999999999999998888643
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.057 Score=71.09 Aligned_cols=223 Identities=14% Similarity=0.103 Sum_probs=157.4
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHH
Q 000049 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLL 2009 (2629)
Q Consensus 1930 ~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll 2009 (2629)
..+.|+.+.+|.++...+..+++.-.+.. ......++..+...+.|.|+-|--+|.+++..+++.... .++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHH
Confidence 34667778889888888888877432222 224466888888999999999999999998888876544 4566555
Q ss_pred HhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHH
Q 000049 2010 HALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMD 2089 (2629)
Q Consensus 2010 ~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~ 2089 (2629)
+.-.+.... + .+...-....|+..++...|+-+..|...++...++..++++..
T Consensus 809 e~Y~s~k~k-------------------~-------~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~ 862 (982)
T KOG4653|consen 809 EEYLSEKKK-------------------L-------QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHE 862 (982)
T ss_pred HHHHhcccC-------------------C-------CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHH
Confidence 432221100 0 00011123467888888889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcc---cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhchhhhhhh----HHHHHHHHHHH
Q 000049 2090 VQSLAKEAAETVTLVID---EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDE----APNMISTLIVL 2161 (2629)
Q Consensus 2090 vr~~a~~al~~l~~~~~---~~~~~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~~~~~~~~----~~~il~~Ll~l 2161 (2629)
.|.++...++.++.... .+.+.++...++... .|+.+.+|++|+..+..+...++.++.+. .-+....+...
T Consensus 863 ~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~ 942 (982)
T KOG4653|consen 863 FRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSY 942 (982)
T ss_pred HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 89999999998887543 345666666666655 47788999999999999999888887763 34455555554
Q ss_pred hc-CCChhHHHHHHHHHHHHHhh
Q 000049 2162 LS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2162 l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
.. +++..++-.+..|+..+-..
T Consensus 943 vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 943 VRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HhcCchhHHHHHHHHHHHHHHHH
Confidence 44 55556777777776665443
No 127
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.99 E-value=0.024 Score=64.87 Aligned_cols=109 Identities=22% Similarity=0.315 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCC
Q 000049 2326 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 2404 (2629)
Q Consensus 2326 ~~~vR~~Aa~aLg~l~-~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~ 2404 (2629)
++.+|..+..++|.|. .+.+-++++++.+...++++++.||..++..|..++...- ....+.++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCC
Confidence 4789999999999994 4556689999999999999999999999999999987522 2345666555556778999
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc
Q 000049 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNLA 2438 (2629)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~ 2438 (2629)
+.+|..|..++..+.....+..+...+.+++..+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999988744455666666665433
No 128
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.98 E-value=0.0028 Score=67.55 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=82.5
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhcc-chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.++|.+++.+.+.+|+.|..++.+|+.++...|........ +++|.+.+++.|++++|+..|+++|++++...... ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 36788888899999999999999999999876655444444 89999999999999999999999999998643210 00
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000049 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2629)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~ 1604 (2629)
. + .-..+++.+.+.+.+.+.+++..++.++.+++
T Consensus 86 ~----------------------~------------~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 I----------------------V------------LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H----------------------H------------HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 0 00124555555666666778888888887765
No 129
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.022 Score=70.62 Aligned_cols=228 Identities=16% Similarity=0.191 Sum_probs=147.9
Q ss_pred cchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhh
Q 000049 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 1376 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~ 1376 (2629)
.-..+.+.+-+.+.+++.-.-.+++-.++-++ .+.-..+.++.++.--.+.+...+.++-+.+++.+.-+. ...
T Consensus 443 an~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~-- 516 (926)
T COG5116 443 ANREIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEM-- 516 (926)
T ss_pred ccHHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHH--
Confidence 34567777777777766555555554444432 334456777777765544434456677777777666432 221
Q ss_pred hcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHh
Q 000049 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQG 1455 (2629)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2629)
.-+.+.+++.++ ++..|.++++.++....+-|+ ..++..++.. .+|.+.+||.+|..+++.++-. +
T Consensus 517 --add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~--D-- 583 (926)
T COG5116 517 --ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD--D-- 583 (926)
T ss_pred --HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEec--C--
Confidence 223566677766 899999999988776666554 1344444444 7899999999999988776321 1
Q ss_pred HHhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---
Q 000049 1456 VKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--- 1531 (2629)
Q Consensus 1456 v~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--- 1531 (2629)
...++..++.|.+ -+..+|.+..-+||-.+.+...+. -+..|-.+..|++.-||..|+-+++.+.....
T Consensus 584 -~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 584 -RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3456666666654 578899999999987765443332 23345556789999999999999988765443
Q ss_pred chhHHhHHHHHHhccCCCC
Q 000049 1532 NPEIASLVPTLLMGLTDPN 1550 (2629)
Q Consensus 1532 ~~~i~~lvp~Ll~~l~d~~ 1550 (2629)
+|.+..+...+...+.+..
T Consensus 657 np~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhHHHHHHHHHHHHhhhh
Confidence 3566667777766665543
No 130
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.95 E-value=0.24 Score=65.01 Aligned_cols=292 Identities=12% Similarity=0.100 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.|+...+.-|+..|....+..+ .....-+..++.++.|. +..||..|+..|..++..- ..|++.+..++.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence 3678889999999999887665 22344455667777775 8889999999999988753 358899999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHhhcCCCcC---hHHHHHHH
Q 000049 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVY 2393 (2629)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~~---~~~~~~i~ 2393 (2629)
+.|+..+......+-.+|-.+...+| ...+..++..+. ..|..+|+.++..|..-+...+..+. .+.-.-|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 99998888888888899888876554 345555666654 56788999999999888877766543 35667777
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh---cCChhHHHHHHHHHHhhc------CCCCchhhHhHHHHHHHHHhhCCccc
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAI 2464 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~~~~~~~~l~~~l~~~p~~~ 2464 (2629)
..+...+.|-...--.....+|+.+-. ..+......+++.+.... ...+.......+.++...+......+
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v 260 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV 260 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC
Confidence 888888888655555566677777665 234433444444332211 11222222223334444333322222
Q ss_pred cCChhHHHHHHHHHhhh----cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCC--H----HHHH
Q 000049 2465 SMSPLFLSILDRLKSSL----KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS--S----EVRR 2534 (2629)
Q Consensus 2465 ~~~~~~~~i~~~l~~~~----~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~----~vr~ 2534 (2629)
-. ..++.+++..+ .+=....+-.-...++.+..+++..+ ....+..+...|...+.... + ..-.
T Consensus 261 ~S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vE 334 (556)
T PF05918_consen 261 SS----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVE 334 (556)
T ss_dssp ------HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHH
T ss_pred Ch----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhh
Confidence 22 24445554433 33233445556666666666654321 11223333344433332221 1 2235
Q ss_pred HHHHHHHHHHhhCch
Q 000049 2535 RALSALKSVAKANPS 2549 (2629)
Q Consensus 2535 ~al~~l~~~a~~~~~ 2549 (2629)
+.++++.++++..|+
T Consensus 335 cLL~afh~La~k~p~ 349 (556)
T PF05918_consen 335 CLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHhhhCcc
Confidence 688899999999886
No 131
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.93 E-value=0.034 Score=69.16 Aligned_cols=191 Identities=19% Similarity=0.188 Sum_probs=131.4
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHh--hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC--c---
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~--- 1532 (2629)
|...++.+.++.-.+|..++..+..+.. ..++.+......++..+.+.++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3344455556666677777776655443 24566666777888888999987777677788888888876655 1
Q ss_pred hhHHhHHHHHHhccCCCChh--HH-HHHHHHHhccccccCChhhhhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000049 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--L~----------d~~~~vr~ 1594 (2629)
..+..+.|.|...+.|.... .| .|+.+|+-..|+...+.......+..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24588889999998887653 44 4566666555655444444442223322 11 11 11357888
Q ss_pred HHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
.|...++-+...++. ..+..++...+|.|..+|..++.+||.+|..+|+-+.+...
T Consensus 205 aAL~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999988876543 34556778889999999999999999999999999988655
No 132
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.91 E-value=0.0025 Score=63.63 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=69.6
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
+|.+++.+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. ++.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46778888 899999999988888743 334778999999999999999999999998742 557
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000049 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2629)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2629)
++.+.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888764 6677999999885
No 133
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=5.8 Score=57.54 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=115.8
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2629)
.+-+..++|.|...+..++..+|..|...+|.++......++.-++.++...+..+.|.+.+||-.+.+....++-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 34467889999999999999999999999999998776666677789999999999999999999998888877766432
Q ss_pred ccccchHHHHHHHHhhhhhhhhhhhcCCc---ccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhh----
Q 000049 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2629)
Q Consensus 2187 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~---- 2259 (2629)
.. ......+.-..... +...+.+.+.. ..+..|.+ ..+..++....+.+.+.-+.+|.+|+..+..+.++
T Consensus 334 ~~-~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 IA-KASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred hh-hHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111111111111 11111122211 11222221 12222666667778888999999999999999874
Q ss_pred --cChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000049 2260 --TSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2629)
Q Consensus 2260 --~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2629)
.|...+.+-+..|..-|++++-.. +-+.|
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~~-~~~~r 441 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYEN-DLDDR 441 (1266)
T ss_pred hccCcccccccccccchhHHhhHhhc-cccHH
Confidence 122334455566666777776553 23444
No 134
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=6.1 Score=57.29 Aligned_cols=234 Identities=16% Similarity=0.170 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHH
Q 000049 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477 (2629)
Q Consensus 1398 ~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~ 1477 (2629)
+|...-..+.+.+++..++.+...+...+..-......++..-.+.+..+. ...++.+-.++|.|...|.+++-.+|..
T Consensus 200 ~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~ 278 (1266)
T KOG1525|consen 200 EADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLK 278 (1266)
T ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 343333444455555555555544433322211111122222222222221 2234456778899999999999999999
Q ss_pred HHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHH---hHHHHHHhccCCCChhHH
Q 000049 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA---SLVPTLLMGLTDPNDHTK 1554 (2629)
Q Consensus 1478 a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~---~lvp~Ll~~l~d~~~~~r 1554 (2629)
|+.++|.|......++....+.++...+.-+.|.+..||-++.+...++.-. +|.+. .+.-.+.....|++..+|
T Consensus 279 a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~rir 356 (1266)
T KOG1525|consen 279 AVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVRVR 356 (1266)
T ss_pred HHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhhhe
Confidence 9999999987655666677889999999999999999999999988876533 55542 222233334445544443
Q ss_pred HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----CCCCcccchHhhhHHHHHHHhc
Q 000049 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKVLV 1629 (2629)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~-~----~~~~~l~~~l~~ll~~L~~~L~ 1629 (2629)
. +.++...-+....-...+.++..+...+.|+.|+||..|..-+..+... . ...+...+-.+.+-..++.++-
T Consensus 357 ~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y 434 (1266)
T KOG1525|consen 357 T--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYY 434 (1266)
T ss_pred e--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHh
Confidence 1 0000000000001111122566666778899999999999988877763 1 1113334444444455555555
Q ss_pred CCCHHHH
Q 000049 1630 DPIPEVR 1636 (2629)
Q Consensus 1630 d~~~~VR 1636 (2629)
..+.+.|
T Consensus 435 ~~~~~~r 441 (1266)
T KOG1525|consen 435 ENDLDDR 441 (1266)
T ss_pred hccccHH
Confidence 5545555
No 135
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.071 Score=61.40 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=129.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
+..+.+.+.|.+.........++++. +...-+|.+...+.+ ...-+|+.+.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 44455555555444444444444443 334456666665543 446677777777777652 44
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+++.+.++.+|+...|++.+.-|+.++-..-.-.......| +.+ .||.... ...-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p-~~S--vdPa~p~--------------------~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSP-YIS--VDPAPPA--------------------NLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCc-ccc--CCCCCcc--------------------ccccHH
Confidence 55666666678888888877777766532100000000000 000 1222110 000012
Q ss_pred HHHHhhcCCC-H-HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000049 1580 IVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2629)
Q Consensus 1580 ~L~~~L~d~~-~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ 1657 (2629)
.+...+.|.+ + -.|..+.-.+.++.. +.-+..+...+.+++.-.|..++.++|.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 2222222221 1 223333333333221 2245556666777788888888888887654 34
Q ss_pred hHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1658 LVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
-+|.|.+.|.+.+ ..-+|..++.+|+.++. ++.++.+.+.+.++.+-+|+++..+|..+-..-|+.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 4666666665433 34578888888877654 2344556667778888889888888776554444444
No 136
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=4.1 Score=54.08 Aligned_cols=361 Identities=18% Similarity=0.227 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
..+.++.|++.+.++.-...|+.|+.||..+++........ .++-+ +.+.+ +|..|+..-.. ++..++....+.
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~-li~vL~~D~~D~E~ik~---~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGMKP-LIQVLQRDYMDPEIIKY---ALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-cccHH-HHHHHhhccCCHHHHHH---HHHHHHHHHhcC
Confidence 35677888888877766788999999999999865433322 12222 22233 33334432222 233333222210
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
=.|. -+.|+. .+-+ ....+++.+-. -+..+..++..++..+..+|..+++++.++..+-|..+
T Consensus 95 d~~~----------v~dds~-qsdd----~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~ 157 (970)
T KOG0946|consen 95 DSPE----------VMDDST-QSDD----LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL 157 (970)
T ss_pred cchh----------hcccch-hhhH----HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH
Confidence 0110 012221 1222 22222221110 13456667888889999999999999999999888776
Q ss_pred hhh---ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch----hHHhHHHHHHhccCCCC-----hhHHHHHHHHH
Q 000049 1494 SQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPN-----DHTKYSLDILL 1561 (2629)
Q Consensus 1494 ~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d~~-----~~~r~al~~L~ 1561 (2629)
... +|.-+..++.+|.|.+.-||..+.--|..+.+..++- .++.++..|+..+.... -.+.+|+-.+.
T Consensus 158 q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 158 QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 554 5778889999999999999999999999988754321 23556667777765321 12345655432
Q ss_pred h---c-----c-ccccCChhhhhhHHHHHHHhh-cCCCHHHHHHH-----HHHHHHHhhhcCCCCccc------chHhhh
Q 000049 1562 Q---T-----T-FVNTVDAPSLALLVPIVHRGL-RERSAETKKKA-----AQIVGNMCSLVTEPKDMI------PYIGLL 1620 (2629)
Q Consensus 1562 ~---~-----~-~~~~~~~~~l~~i~p~L~~~L-~d~~~~vr~~a-----~~~l~~l~~~~~~~~~l~------~~l~~l 1620 (2629)
. . . |-..-.-|.+..++|...-+- ....|...+.+ .+++..+..- +.+.... -.-..+
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcch
Confidence 2 0 1 111111123333333322211 11245544433 2233332211 1111110 112346
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1621 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1621 l~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~g~~----------~~~----~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
+..|..++-++ ..+|+..++.+++.+++..... +++ .++-.++....+..+...|..++.++-.
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 66666666654 4578888888888887753211 112 2333333444444566678887777654
Q ss_pred HHHh--hChhHHHhHhHHHHHhhcCC-ChhhHHHHHHHHH
Q 000049 1685 VLAA--LGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2629)
Q Consensus 1685 i~~~--~g~~~l~~llp~l~~~l~~~-~~~vR~~a~~~l~ 1721 (2629)
..-. -|. ..++..++....+. +-.+..+.+.+.+
T Consensus 397 ~l~dN~~gq---~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 397 YLYDNDDGQ---RKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHhcchhhH---HHHHHHHhhhhccccccchhhhhHHHHh
Confidence 4321 122 23444444444443 2256666655544
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.65 E-value=0.0089 Score=59.65 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=68.0
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000049 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2629)
Q Consensus 1578 ~p~L~~~L-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~ 1656 (2629)
+|.|.+.+ +++++.+|..++.+++.+. -+..++.+...+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35667777 7889999999999988442 23578889999999999999999999998642 5
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHH
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~ 1683 (2629)
+.++.|.+.+.++....+|..++.+|+
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887776666877777664
No 138
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.62 E-value=4.2 Score=53.24 Aligned_cols=423 Identities=16% Similarity=0.142 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhhHHHHHh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLK 1465 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll~ 1465 (2629)
....+...+++.++.+-.+.+...+. ..++.+++++.+++ ..+++++..+++.+.+.-+.. ..+.+++.+..
T Consensus 68 ~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~ 147 (678)
T KOG1293|consen 68 ELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSL 147 (678)
T ss_pred hhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 33345666777777766665555554 57889999999998 899999999999998744221 22455555443
Q ss_pred hhc-cCChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH--HhHHHH
Q 000049 1466 GLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPT 1541 (2629)
Q Consensus 1466 ~L~-~~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~ 1541 (2629)
.+. +.+...+.. +. +.+.+...+. +..-+-..+...+.-++..-+..+|.+|..++..-...+.|+.. ..++..
T Consensus 148 l~s~~lk~~~~l~-~~-~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~ 225 (678)
T KOG1293|consen 148 LYSIELKYISRLD-VS-RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL 225 (678)
T ss_pred HHhhhhhhhhhhh-hh-hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH
Confidence 333 111111110 00 1111111121 22222234444444444445788999999888864444444321 111111
Q ss_pred HHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc----
Q 000049 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP---- 1615 (2629)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p--~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~---- 1615 (2629)
+ .|.. +.+ .+.+.+.++....|-.++.++..++.. +..++-.+
T Consensus 226 L----~d~~--------------------------v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~ 274 (678)
T KOG1293|consen 226 L----KDKG--------------------------VNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFI 274 (678)
T ss_pred H----hccc--------------------------cchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-ccccccccccee
Confidence 1 1110 011 122334455555666667777666654 21112111
Q ss_pred ---hHhhhH--HHHHHHhcCCCHHHHHHHHHHH---HHHHhhhCCC----CchhhHHHHHHHhccCC--ChHHHHHHHHH
Q 000049 1616 ---YIGLLL--PEVKKVLVDPIPEVRSVAARAI---GSLIRGMGEE----NFPDLVSWLLDALKSDN--SNVERSGAAQG 1681 (2629)
Q Consensus 1616 ---~l~~ll--~~L~~~L~d~~~~VR~~A~~aL---~~l~~~~g~~----~~~~ll~~Ll~~L~~~~--~~~~R~~a~~~ 1681 (2629)
..+..+ -.....+.+|.+..-..+.... ..+++..... ......+.++....+-. ....|.-++..
T Consensus 275 ~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e 354 (678)
T KOG1293|consen 275 FFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNE 354 (678)
T ss_pred eccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhh
Confidence 111111 1122223344322211111111 1133322211 11223333332222111 01122211111
Q ss_pred ---HHHHHHhhChh---HH-H-hHhHHHHHhhcCCChhhHHHHHHHHHHhhhh---hccchHhhHHhHHHHHHhhcCCCC
Q 000049 1682 ---LSEVLAALGTV---YF-E-HILPDIIRNCSHQRASVRDGYLTLFKYLPRS---LGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1682 ---L~~i~~~~g~~---~l-~-~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~---~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
....+...|.. .+ + ..+..++......+...+.+++.++..+... +...+ --.+++.++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~--~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL--KRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC--ccchhHHHHHHHhhCcc
Confidence 11222222221 11 1 1122222222345777888888888766653 33332 23568888888889999
Q ss_pred hhHHHHHHHHHHHHHHHhhhch---hh-hHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccH
Q 000049 1751 ESVRDAALGAGHVLVEHYATTS---LP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~~---i~-~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~ 1826 (2629)
-.|..+++.++..++-.|++-. +. -.+..++...++.+..+|..++-.+..+.+.. + +
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-------------d-e---- 494 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-------------D-E---- 494 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-------------h-H----
Confidence 8999999999999887776421 21 25667788888999999999999998887642 1 0
Q ss_pred HHHHHHHHHHhchhhHHHHHH-HHHhhccCccHHHHHHHHHHHHHHHhcChhh
Q 000049 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2629)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~vl~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2629)
.....+.. ++-. .+....+|+.+.|.+.+.+++..+.-+..+.
T Consensus 495 -~~k~~~~~--------ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 495 -EEKFQLLA--------KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred -HHHHHHHH--------HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 00011111 1111 1222358999999999999999888765443
No 139
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=1.4 Score=58.58 Aligned_cols=193 Identities=16% Similarity=0.139 Sum_probs=126.2
Q ss_pred hHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhc-hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2230 LLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEF-VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~-v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
=+.-+++++... ++.++.+|+.-+.++.....++.+.-| +..++|.|+.++....+.++...|..+|..|++.+|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345567777765 666777777777777655555555544 356788899999998899999999999999999988654
Q ss_pred cCchH-HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCChh---HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC
Q 000049 2308 KPFLP-QLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVD---PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2308 ~p~lp-~L~~~~~k~L~d-~~~~vR~~Aa~aLg~l~~~~~~~~---~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
.-.+. ..++.|+..|.. .--+|-..+..+|-.|..-+|+.- .-+...+..+.-=...++..++.-...++.+...
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32221 134444444333 345777788888888765444210 0011111111111234555556555566655544
Q ss_pred CcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q 000049 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+- ..++-..+++|..++...+...-..++.|+.+++..+.
T Consensus 328 d~-f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 328 DE-FHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred cc-chHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 32 35677788999999999999999999999999987654
No 140
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.02 Score=67.27 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=124.5
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---hH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2629)
.+...+..|.+++|..+..++..+..++.-.++.+...|..++..+.+-+++....|-.+||.+++.+.+.+.+. +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999999999999999887788888889999999999999999999999999999999887654 23
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc
Q 000049 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2629)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2629)
+.++-.|+..-.+.+..+| +|-++|.. .+. ...-+.+++.|..++...++++|..++.+..+....++-+....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~---~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVA--MVN---HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHH--HHh---ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 4444444444444444555 33344332 111 12234567777777888889999999888776655544333334
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
+|...+.+.+.+-+.|.-|.+|+.|-..
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhHH
Confidence 5555666777776777776666554433
No 141
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=4.1 Score=55.64 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=68.2
Q ss_pred hhccCccHHHHHHHHHHHHHHH---hcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhh
Q 000049 1851 MVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2629)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~---~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2629)
..+++.+..+|-.|++++.... ...+..+-|.+...++.++.++...++-.-..|..|+..+....|+- +...
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3468888999999999887533 34567788888899999999999999999999999999999988874 5677
Q ss_pred HHHHHhhhcCC
Q 000049 1924 IIPILSRGLKD 1934 (2629)
Q Consensus 1924 llp~L~~~L~d 1934 (2629)
++|.+...+.+
T Consensus 890 vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 890 VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHH
Confidence 88888765443
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.50 E-value=0.5 Score=57.28 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=142.2
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHhchhh-hhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2117 Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~-~~~-~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-+...++ |......+..++..+.+. .. .-+....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~-~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KN-FSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cC-CChhhHH
Confidence 344566778888888888888877765543 222 23334444444453 333444457777777632 11 1111111
Q ss_pred H-HHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhh
Q 000049 2195 V-IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2629)
Q Consensus 2195 ~-l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~ 2273 (2629)
. ++....... ++ +-....|..+...+..+..... ..++..-..++
T Consensus 80 ~i~~~l~~~~~-------------~q--------------------~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv 125 (262)
T PF14500_consen 80 KILRSLFQNVD-------------VQ--------------------SLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFV 125 (262)
T ss_pred HHHHHHHHhCC-------------hh--------------------hhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHH
Confidence 1 111111110 00 0123456666666666665543 33333333444
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHc--------CCC----CHHHHHHHHHHHHHHH
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDS----TRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L--------~d~----~~~vR~~Aa~aLg~l~ 2341 (2629)
.-++..+.+.-++.-...++..+..++...+ +.++..++..++.-.+ +|+ .++++..-..||.
T Consensus 126 ~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--- 200 (262)
T PF14500_consen 126 YGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--- 200 (262)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---
Confidence 4455555543366666777888888877766 3677788877766543 233 1355555444443
Q ss_pred hccCCh-hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhh
Q 000049 2342 ALSTRV-DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2629)
Q Consensus 2342 ~~~~~~-~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2629)
.++.+ +..+|.|++.+.++.+.++..+++.|..++...|.....+|...||+.+...+
T Consensus 201 -s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 201 -STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred -CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 33444 46689999999988888999999999999999887665899999999887543
No 143
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.86 Score=53.59 Aligned_cols=327 Identities=15% Similarity=0.129 Sum_probs=179.3
Q ss_pred cchhhH---HHHHHHHhhhhcCCCCh-hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccch--------hhhHHH
Q 000049 1191 WLGRQG---IALALHSAADVLRTKDL-PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNV--------SLLFPI 1258 (2629)
Q Consensus 1191 ~~~R~~---~~~~l~~l~~~~~~~~~-~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~--------~~Ll~~ 1258 (2629)
..+|+. +..++..+....++-++ +.++.-| +.++..++..|+.-++..+..++++.+...+ .+++|.
T Consensus 54 enhrekttlcVscLERLfkakegahlapnlmpdL-QrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDL-QRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhhchhhhHHH-HhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 356766 55666666555554443 4555555 7888889999999998888888888775433 366677
Q ss_pred HHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHH-------HHhhcCCCcHHHHHHHHHhhhhhHhhh
Q 000049 1259 FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDK-------LLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2629)
Q Consensus 1259 ~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~-------L~~~L~~~~~~Vq~~~~~~L~~l~~~~ 1331 (2629)
+-.++.. .++.+-.+++..+..++..-. .+..+++. +.+.-...+.-+|..+.+.+-.+....
T Consensus 133 ildcIgg------eddeVAkAAiesikrialfpa----aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 133 ILDCIGG------EDDEVAKAAIESIKRIALFPA----ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred HHHHHcC------CcHHHHHHHHHHHHHHHhcHH----HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 7777754 356677788888877775321 11112110 000001112234444443333222211
Q ss_pred ccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hhCcchhhhhcHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q 000049 1332 QDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFE 1404 (2629)
Q Consensus 1332 ~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg~~~l~~~~i~~~L~~~l~~~-~~~~~R~~Al~al~ 1404 (2629)
++. ...+++.+...|...+|.-++.........++. ..|.+.+.+..+++.+...+... .++-..--+++.++
T Consensus 203 pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfg 282 (524)
T KOG4413|consen 203 PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG 282 (524)
T ss_pred HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence 111 135666677777665665566555544444443 33555555557788887777432 25666666777777
Q ss_pred HHHHHhc--cCchhH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-Hh----hHHHHHhhhccCC-h
Q 000049 1405 CLCEKLG--RLFEPY----VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL----VLPSLLKGLEDKA-W 1472 (2629)
Q Consensus 1405 ~La~~~~--~~~~~~----v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~----ilp~Ll~~L~~~~-w 1472 (2629)
.+..... +..+.. +...+...+......++...++|.++++.+.+...+..+ .. -...++....+.+ .
T Consensus 283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc
Confidence 6653322 111111 122334445555556678899999999999887655432 11 2223333333332 2
Q ss_pred hhhHHHHHHHHHHHh---hCchhhhh-----hcc-------------chHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1473 RTKQSSVQLLGAMAY---CAPQQLSQ-----CLP-------------KIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~---~~p~~l~~-----~L~-------------~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
-....++.+|.+++. ..|+++.. .+. +=...+...++.+.|+++-++.+.+..++.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 233445666666653 23443211 000 112234456677788888888888777764
No 144
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.39 E-value=0.096 Score=62.86 Aligned_cols=187 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred HHHHhhhcc-CChhhhHHHHHHHHHHHhhCchh-hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hHHh
Q 000049 1461 PSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIAS 1537 (2629)
Q Consensus 1461 p~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ 1537 (2629)
..++..|+. .++..+..++.+++..+.....+ +... -+.++.+..++.++++.||..|.++|.+++...++. .++.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 334444442 34555555555555544322111 2111 356788899999999999999999999998766653 4566
Q ss_pred HHHHHHhccC-CC-ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc
Q 000049 1538 LVPTLLMGLT-DP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2629)
Q Consensus 1538 lvp~Ll~~l~-d~-~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2629)
.++.+++.+. ++ +..++ .++..|..-+... .....+...+|.+.+.+...+..+|..+..++.+++. ++ ++.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np-~~~ 168 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NP-DMT 168 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CH-HHH
Confidence 6666666432 22 22232 3455444321111 1112334455566666666666677666666666654 21 111
Q ss_pred ch--HhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000049 1615 PY--IGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1615 ~~--l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
+. -.+.++.+..+++.. ..++...+...+..+...+.++
T Consensus 169 ~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11 123344444444432 4455555555555555554443
No 145
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.37 E-value=16 Score=57.06 Aligned_cols=657 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-------HHHhHhHHHHHhhcC-----CChhhHHHHHHHHH
Q 000049 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-------YFEHILPDIIRNCSH-----QRASVRDGYLTLFK 1721 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-------~l~~llp~l~~~l~~-----~~~~vR~~a~~~l~ 1721 (2629)
++.+++..-++.......+ .+-.+-+-.+.+.+|.. .+-+++|.+++.++. ..+..|+-.....-
T Consensus 630 hv~~Ii~~smela~~a~ep---lnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELcl 706 (3550)
T KOG0889|consen 630 HVHDIISTSMELATTAPEP---LNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELCL 706 (3550)
T ss_pred chhHHHHHHHHHHhcCCcc---hhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHH
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc--------hhhhHHHHHhhccCCC-chHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFND-NWRIR 1792 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~--------~i~~llp~l~~~l~d~-~~~vR 1792 (2629)
.++..+.. +.||++.++.++..+++-. ++++...++.+...+.+..++ ..+.++..+...+.+. +...-
T Consensus 707 TvPvRLS~-Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s 784 (3550)
T KOG0889|consen 707 TLPVRLSS-LLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYS 784 (3550)
T ss_pred hhhHHHHH-hhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHH
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2629)
..++..+|.+ +|...+...+..+.+.-.............-| +.
T Consensus 785 ~~a~rILGKl----gG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~--------------------------------~~ 828 (3550)
T KOG0889|consen 785 HRALRILGKL----GGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKG--------------------------------LA 828 (3550)
T ss_pred HHHHHHHHhh----cCcchhhcccccccccccCccccceEEEeccc--------------------------------cC
Q ss_pred hcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch--hhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000049 1873 ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV--LPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1873 ~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~--l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
....-.+.+.+......+...-. +...|..|...+.......-... .......+......+ -+.+...+...+.+
T Consensus 829 ~~~~lp~~~~i~sA~~~l~s~~~--d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-i~~~~e~~~~n~~~ 905 (3550)
T KOG0889|consen 829 HPLLLPLSKLIRSAFDALVSPNS--DPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWS-IDLRLECCEINLDL 905 (3550)
T ss_pred ccccCchHHHHHHHHHHHhCccC--CcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcch-HHHhhHhhhccccc
Q ss_pred HHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHh
Q 000049 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2629)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~ 2030 (2629)
....+.....+..--..-.+-....-...+.|..|...+..+..+
T Consensus 906 ~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~----------------------------------- 950 (3550)
T KOG0889|consen 906 TERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRH----------------------------------- 950 (3550)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHH-----------------------------------
Q ss_pred hhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhh--------------hHHHHHHhcCCCCHHHHHHHHH
Q 000049 2031 VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGT--------------ILPALLSAMGDDDMDVQSLAKE 2096 (2629)
Q Consensus 2031 ~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~--------------il~~Ll~~L~~~~~~vr~~a~~ 2096 (2629)
.++..+....|..-.++... .+++|...+...+.+++.....
T Consensus 951 ------------------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~ 1006 (3550)
T KOG0889|consen 951 ------------------------FALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVR 1006 (3550)
T ss_pred ------------------------HHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHH
Q ss_pred HHHHHHh-----------hcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhh-hhhhHHHHHHHHHHHhcC
Q 000049 2097 AAETVTL-----------VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSD 2164 (2629)
Q Consensus 2097 al~~l~~-----------~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~-~~~~~~~il~~Ll~ll~d 2164 (2629)
++..+.. ....+-+..+++.+...+.++.|.-|...+..++.++...+.. +-++..+++..++-.+.|
T Consensus 1007 ~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d 1086 (3550)
T KOG0889|consen 1007 ALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKD 1086 (3550)
T ss_pred HHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcC
Q ss_pred CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHH
Q 000049 2165 SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAE 2244 (2629)
Q Consensus 2165 ~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~ 2244 (2629)
-..++-......-... ++..++.........+.+. +....++..+...+.+++..
T Consensus 1087 ~~~e~~~~~~~~~~~~-----------l~~ll~~~~~~~~~~~~~~--------------~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1087 TESEVSSLPLDEAKDI-----------LMDILRVIFIDELAEEERA--------------KSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred CccccccchHHHHHHH-----------HHHHHHHHHHHhhhhHHHH--------------HHHHHHHHHHHHHHcCCchH
Q ss_pred HHHHHHHHHHHHHhhcChhh---hhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch----------
Q 000049 2245 LREQAALGLGELIEVTSEQS---LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL---------- 2311 (2629)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~---l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l---------- 2311 (2629)
+|+.+..+|..+...+|.+. +.|+-+.+.-|+...--...+.......++.+...+.-.+..+.-..
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHhccCC--------hhHHHHHHHHhhhcCCHHHHHHHHHH
Q 000049 2312 -------PQLQTTFIKCLQDSTRTV----RSSAALALGKLSALSTR--------VDPLVGDLLSSLQVSDAGIREAILTA 2372 (2629)
Q Consensus 2312 -------p~L~~~~~k~L~d~~~~v----R~~Aa~aLg~l~~~~~~--------~~~ll~~Ll~~l~~~d~~vr~~~l~A 2372 (2629)
.+... +.+.....+..- |..+...++..+...+- ...++..+...+....+++.+.+..+
T Consensus 1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Q ss_pred HHHHHhhcCCCcChHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCC
Q 000049 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD---DDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS 2440 (2629)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~ 2440 (2629)
++.++.. ...+...........+...+.|. ....+......++-+..++..+....+++++..|..+
T Consensus 1301 l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~~~ 1370 (3550)
T KOG0889|consen 1301 LRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNNLSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWLED 1370 (3550)
T ss_pred HHhhhhc-cccccHHHHHhhHHHHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
No 146
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.34 E-value=0.56 Score=58.73 Aligned_cols=129 Identities=21% Similarity=0.229 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCCccC--chHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhccC-ChhHHHHHHHHhhhcCCHHHHHH
Q 000049 2293 LSTLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREA 2368 (2629)
Q Consensus 2293 l~~L~~L~~~~~~~l~p--~lp~L~~~~~-k~L~d~~~~vR~~Aa~aLg~l~~~~~-~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2629)
|.....+++.....+.+ .+..+...++ .++..++..+|..|..|||-..-+.. ....+++.+...++..+..+|..
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~ 83 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKIT 83 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33445555555544555 3336555544 78888999999999999999976654 34677888888887678999999
Q ss_pred HHHHHHHHHhhcCCCcCh--------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 000049 2369 ILTALKGVLKHAGKSVSS--------AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2369 ~l~AL~~vi~~~g~~~~~--------~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
+++++..++...|..... .....+..++.+.+.+.+++++..+++.+++|...
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999999887765422 23468888999999999999999999999997643
No 147
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.44 Score=55.19 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=70.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcC--CCChhHHHHHHHHHHHHHHhchhhhhhhH
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG--DNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~--d~~~~vR~~a~~~L~~l~~~~~~~~~~~~ 2151 (2629)
.-+.++.+.+.+++...|-.+..+++++-. + .-++.|.+.+. .+++.+|..|+.+||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s---~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQS---P----AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccc---h----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------
Confidence 457778888888888888888888887743 2 23344444442 4678999999999999985
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2629)
++.+..|...++|+++-|++.+.-+|.-.-...
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 467788888999999999999888887664433
No 148
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=7.3 Score=51.30 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
..++..++-+++.+...++..||...+..+..++.. ..+.-+..+...+...+.+..+.+|..|+.+|..+-.. |.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CC
Confidence 356778899999999999999999999999988873 34445688888899999999999999999998877532 11
Q ss_pred hhhhhccchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccC
Q 000049 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTV 1569 (2629)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~ 1569 (2629)
.-. -.++..+..++ +|++++||.+|..++..=. ...|.++....|-+...|. .+..+.. +. ..
T Consensus 159 dee---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 159 DEE---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred CCc---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 100 12344444444 6999999999886654222 1234444444455554542 2222211 00 11
Q ss_pred ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1570 ~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
..-+...-+-.+..++.|++..+|.++.+.+.. ..... + ..++..|..+=.+.+.+|+..+.+++-.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 112334556678889999999999998887643 22211 1 1244444443335566888888887765
No 149
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.87 E-value=0.011 Score=45.60 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
++|.++++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.86 E-value=4.9 Score=53.20 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCCh
Q 000049 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2629)
Q Consensus 1672 ~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2629)
...+.-+++-+..+...++. .-+..+..++..+.+.+..+|..++..|..+|+.-++ |+..+...+.+.|..++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccH
Confidence 44556677777777665533 2355677888899999999999999888888876443 788899999999987776
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1752 ~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
.....+-.++..++..-+...+..++..+... ...+..+|..++..+..-+..+
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 66677777777777665555455555555421 1234568888888776665544
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.82 E-value=1.4 Score=53.62 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=149.3
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1742 ILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
+-.+|.++++.+|..++..+..++..++.+ .+..++..+.+.+. +|..-..++..+..++.. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~-~~~------- 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM-KNF------- 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC-cCC-------
Confidence 345678889999999999999999877643 45556666666663 344444445666555421 110
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh--ccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L 1894 (2629)
+.+....++..++.. .......+|..+.+++..+..+....+...-+.++..+++.+
T Consensus 74 ---------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 74 ---------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred ---------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 000111223333221 123345689999999999998877777666677777777777
Q ss_pred c-CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhh----cC----CCChhHHHHHHHHHHHHHHhhchhhHHHhHH
Q 000049 1895 A-SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRG----LK----DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2629)
Q Consensus 1895 ~-~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~----L~----d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2629)
. ++++..-..+...+..+....... ....+...+.-. .+ |+..=.|.....+|...+... ..|.+
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~ 207 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAP 207 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHH
Confidence 6 567877777887777777665422 333444433322 11 222223444444554443321 12446
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcc
Q 000049 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~ 2013 (2629)
..+|.+.+-|....+.++..+.+++......+|...+.++...+.+.|+
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999998777777666665554
No 152
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.80 E-value=0.3 Score=58.69 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--c
Q 000049 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--R 1412 (2629)
Q Consensus 1336 ~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--~ 1412 (2629)
.+-++.++..|...++...+..+...++..+... ..+.+...+.++.+...+.++ ++..|.-|+.++..++.... .
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHH
Confidence 3455777777777777778888888887765421 223334456788888888887 79999999998888775433 2
Q ss_pred CchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
.++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|..++-.+|..++.+|..++... .
T Consensus 90 ~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~ 166 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-D 166 (254)
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-H
Confidence 3556666666655443 2355788777777776632111 1234667888898898888899999999999888642 2
Q ss_pred hhhhhc-cchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCc
Q 000049 1492 QLSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1492 ~l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.....+ .+..+.++.+++.. +.++-..+..-+.++.+.++.
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 111111 24555666666654 567777777777888777664
No 153
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.80 E-value=3.9 Score=55.03 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=63.7
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHh
Q 000049 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2629)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~-~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~ 1688 (2629)
+.+...++..++.+..-+..++..||..+++.+..+-..+... ...-=+..|++..++.. +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 3466677778888888888999999999999999998877652 22211445666666655 444555443333333334
Q ss_pred hChhHHHhHhHHHHHhhcC
Q 000049 1689 LGTVYFEHILPDIIRNCSH 1707 (2629)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~ 1707 (2629)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 4444446788999888764
No 154
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.78 E-value=1.4 Score=57.57 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=119.4
Q ss_pred CChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHH
Q 000049 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIG 2137 (2629)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l----~d-~~~~vR~~a~~~L~ 2137 (2629)
.++.|+...++..|+..+..+....-+...+|+.+++....+ +....+++.|...+ ++ .||.--....++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 456778888888888887432212223345566555544332 33444444443332 22 34444445555555
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCccc
Q 000049 2138 YFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217 (2629)
Q Consensus 2138 ~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 2217 (2629)
.+.+.....-...+..+ -...+-.+..++...-.++.|.....+.+.++...
T Consensus 98 ~lir~~~~~~~~~v~~~---------------E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~------------- 149 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQF---------------EEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP------------- 149 (435)
T ss_dssp HHHHHS-GGGHH---HH---------------HHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-------------
T ss_pred HHHHhccCCChhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 55443221111111111 11222223333333333445544444444443221
Q ss_pred ccCCCCcccchhhHHHHHHHHhcCCHHHH---HHHHHHHHHHHhhcChhhh--hhchhhhhHHHHHHhcCCCCHhHHHHH
Q 000049 2218 IPGFCLPKALQPLLPIFLQGLISGSAELR---EQAALGLGELIEVTSEQSL--KEFVIPITGPLIRIIGDRFPWQVKSAI 2292 (2629)
Q Consensus 2218 l~g~~l~k~l~~ilp~ll~~L~~~~~~~r---~~aa~~L~~l~~~~~~~~l--~p~v~~i~~~Li~~l~~~~~~~vk~~a 2292 (2629)
+-..|+....++|.++.-- -++.+ -.....|..++++.+ ..+ .+++..+.|..-+++..+.++ ..+
T Consensus 150 --~~~~p~~y~~L~~~Ll~p~---lWe~~gniPalvrLL~a~i~k~~-~~i~~~~~l~~iLgvFQkLi~sk~~D---~~g 220 (435)
T PF03378_consen 150 --SSPLPDAYKQLFPPLLSPA---LWERRGNIPALVRLLQAYIKKDP-SFIVANNQLEPILGVFQKLIASKAND---HYG 220 (435)
T ss_dssp ----S--TTTGGGHHHHTSGG---GGGSTTTHHHHHHHHHHHHHHHG-GG----S-CHHHHHHHHHHHT-TTCH---HHH
T ss_pred --CCCCcHHHHHHHHHHcCcc---hhccCCCcCcHHHHHHHHHHhCc-hhhcchhhHHHHHHHHHHHHCCCCcc---hHH
Confidence 0112344455555554211 11111 234556677776665 333 356778888777888766433 457
Q ss_pred HHHHHHHHHhcCC-CccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Q 000049 2293 LSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL 2340 (2629)
Q Consensus 2293 l~~L~~L~~~~~~-~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l 2340 (2629)
++.|..++..++. .+.||+++++..++..|+.. .+..+.....-++.+
T Consensus 221 F~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 221 FDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 8899999999987 58999999999999999875 555555555555544
No 155
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.73 E-value=0.12 Score=67.64 Aligned_cols=188 Identities=14% Similarity=0.215 Sum_probs=138.4
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+-..++|.|.+.+...+..+|....+-+......++. ..+.+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4567899999999999999999998888888776654 235678999999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHh-HHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1653 ~~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ll-p~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
..+ .+++..+... +.|+....|.....+++.+...+....-..++ -...+.+.++-..-|.++...+......+..
T Consensus 403 ~~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHhh-CccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 743 4666655444 33444557887777787776655433322222 2333456677777888888777766665543
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
...-.+|+|.+.....|++..||..|..++..+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 233456888888888899999999998888776543
No 156
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.58 E-value=0.13 Score=67.09 Aligned_cols=256 Identities=16% Similarity=0.137 Sum_probs=162.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000049 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2629)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~ 2313 (2629)
++..+.-.+.+.|..-...|.+.++..+. .+..+ .+.+.|+..+.-..........+.-++..+. -.+|...
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~~pe-~i~~~--kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld-----~~eyq~~ 330 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDNFPE-EIIAS--KVLPILLAALEFGDAASDFLTPLFKLGKDLD-----EEEYQVR 330 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhhhH-HHHHH--HHHHHHHHHhhccccchhhhhHHHHhhhhcc-----ccccccc
Confidence 45556666777777777777777766663 33222 2333333333221111111111111222222 2346677
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-c--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHH
Q 000049 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSAL-S--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2629)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~-~--~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2629)
+.+.+++.+..+++.+|..-..-+-.++.. . ..-++++|.+..++.++++.+|+..++++..++.+.+... .-.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~---Ln~ 407 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN---LNG 407 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh---hcH
Confidence 888999999999999998877766666442 2 2357899999999999999999999999999999887752 234
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH-HHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh
Q 000049 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE-LLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2629)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2629)
.++..+...-.|.+.+.|.....|+|+++....+..-..++.. +.....++-...|...+..+.+.-...+.. ..
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~v 483 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EV 483 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hh
Confidence 5555555555577888999999999999987654332222221 111123333334655666666654444433 33
Q ss_pred HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhh
Q 000049 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 2504 (2629)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~ 2504 (2629)
...+++.++....+++..+|+.|..++...+....
T Consensus 484 a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 45677788888888999999999999887766543
No 157
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.42 E-value=3 Score=54.49 Aligned_cols=369 Identities=13% Similarity=0.176 Sum_probs=180.3
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCC
Q 000049 2144 KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2629)
Q Consensus 2144 ~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l 2223 (2629)
+.++.++...++..|+..++.+...=-+-...|+-+++........|.....+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il--------------------------- 69 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEIL--------------------------- 69 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHH---------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHH---------------------------
Confidence 46788999999999999886432211111233333433333322222211111
Q ss_pred cccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcCh---hhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH
Q 000049 2224 PKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSE---QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~---~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2629)
..+..++.....++ ++.--....++++.+++.+.. +.+..+-..+++++..+|... -.+.-.-+++.|+.+
T Consensus 70 ----~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~L 144 (435)
T PF03378_consen 70 ----QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQD-VQEFIPYVFQILAQL 144 (435)
T ss_dssp ----HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 11222222222333 344445678999999987653 234466677888888888763 456677889999999
Q ss_pred HHhcC-CCccCchHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHhc-------cCChhHHHHHHHHhhhcCCHHHHHHHH
Q 000049 2300 IRKGG-IALKPFLPQLQTTFIK-CLQDSTRTVRSSAALALGKLSAL-------STRVDPLVGDLLSSLQVSDAGIREAIL 2370 (2629)
Q Consensus 2300 ~~~~~-~~l~p~lp~L~~~~~k-~L~d~~~~vR~~Aa~aLg~l~~~-------~~~~~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2629)
++..+ ..+-+..-+|.+.++. .+.+....+ -.....|..++.. .+++.+++.-.-..+.+...+ ....
T Consensus 145 le~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF 221 (435)
T PF03378_consen 145 LELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGF 221 (435)
T ss_dssp HHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHH
T ss_pred HHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHH
Confidence 98776 3333333344444332 222221112 1122222222221 245566665554444332111 2245
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhcCChhHHHH------------HHHHH-Hh
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLAD------------LLQEL-LN 2436 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~------------~l~~l-l~ 2436 (2629)
+-|..++...+....++|.+.|+.++...+++ ..+.........++.++...+++.+.. ++..+ +.
T Consensus 222 ~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp 301 (435)
T PF03378_consen 222 DLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLP 301 (435)
T ss_dssp HHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcC
Confidence 66777788777765588999999999998875 456655555555565554444443322 22221 11
Q ss_pred hcC-CCCchhhHhHHHHHHHHHhhCCccccC-ChhHHHHHHHHHhhhcCCChhHH---HhH-----HHHhHHHHhhhhhc
Q 000049 2437 LAS-SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLKDEKFPLR---EAS-----TKALGRLLLHQIQS 2506 (2629)
Q Consensus 2437 ~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~-~~~~~~i~~~l~~~~~~~~~~ir---~~a-----~~alg~ll~~~~~~ 2506 (2629)
... -.....|..++.++..++.+++...-. ...|..+++.+...+........ +.. ....|+-..+.
T Consensus 302 ~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~~d~~~~gy~~~fs--- 378 (435)
T PF03378_consen 302 DLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDEEDVEDIGYQVSFS--- 378 (435)
T ss_dssp HGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S-----------TT-GGG---
T ss_pred chhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccccccccccccccchhcccchhhH---
Confidence 111 112234666888888888776643222 34666677777665544332111 000 00011100000
Q ss_pred CCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2507 GPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
.+...=..=.-.+. +-.|+|.-....+..+.+.+|..+.+.+..
T Consensus 379 ------~L~~a~~~~~Dp~~-~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~ 422 (435)
T PF03378_consen 379 ------KLAFAGKKPRDPLP-EIPDPKQYLAQSLSKLSQAHPGKIPPLIQQ 422 (435)
T ss_dssp --------GGG------S-T-TTTCHHHHHHHHHHHHHHHTTSSHHHHHGG
T ss_pred ------HHHhCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCchHHHHHh
Confidence 00000000001111 144678888888999999888776665544
No 158
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.29 E-value=17 Score=48.77 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC
Q 000049 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...|..|+..|...++......+. .+....+..+..++....|++++..+..+.++-.......-......+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888899898888888776664 566777778877767788999999888888765431111111222222112122
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccC---------------------------ChhhhHHHHHHHHH
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~L~~ 1484 (2629)
++-..|-.+..++..=...+.. ....+.|.+...+..- +-+.-..-+.++..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2223333333333222222211 1234444444433210 00000111222333
Q ss_pred HHhhCchhh-hhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhh--hcCchhHHhHHHHHHhccCCCC--hhHHHHHH
Q 000049 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLD 1558 (2629)
Q Consensus 1485 la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~lvp~Ll~~l~d~~--~~~r~al~ 1558 (2629)
+..-....+ ...+..++..++.++..+ ++..=+++...+..+.. .+++..+..++..|.....-.+ ...-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332211111 233455666666665443 33334677777777765 3455567778888777654331 11113444
Q ss_pred HHHhccccccCChhhhhhHHHHHHHhh------cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHh--hhHHHHHHHhcC
Q 000049 1559 ILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVD 1630 (2629)
Q Consensus 1559 ~L~~~~~~~~~~~~~l~~i~p~L~~~L------~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d 1630 (2629)
.|..+. .... .+-.+...+ ..++..+-+.|...++.+....+......-... .+++.+...+..
T Consensus 241 nL~~S~----~g~~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 241 NLLKSH----LGHS----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHcCc----cHHH----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 443321 1112 233333333 123566677888888887765322111111123 489999999997
Q ss_pred CCHHHHHHHHHHHHHHH-hhhC
Q 000049 1631 PIPEVRSVAARAIGSLI-RGMG 1651 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~-~~~g 1651 (2629)
+++.|-......+..+. ..++
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhh
Confidence 76666666666666666 4444
No 159
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.26 E-value=6.9 Score=59.18 Aligned_cols=296 Identities=12% Similarity=0.018 Sum_probs=163.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2629)
.+++..++..|...|..+..++-+. +...++..+...+. ..+.++|..+..++..++...+ ..+..-++.+
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkSGWktI 1225 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKSGWKSM 1225 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhcCcHHH
Confidence 4556778888888888877655321 23456655555444 4678999999999999887765 4567788999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhhhhhHHHHHHhccCc---CchhHHHHHHHHHHhhhccCc
Q 000049 1967 IPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAV 2036 (2629)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~aL~~L~~il~~~~~~i 2036 (2629)
+..+..+..+.++.+-..|.+.+..++..+-. ..+.+++..+.+.-... +.+-.+++.++.+...-.+.-
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888898888888888888777654322 23333333333322222 222344444443321000000
Q ss_pred Ccccch-h-hhcCCCchh-HHHHHHHHHHHh-CCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----c
Q 000049 2037 LPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----E 2108 (2629)
Q Consensus 2037 lp~Lip-~-L~~~~~~~~-~~~aL~~La~~~-g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~ 2108 (2629)
+....+ . ...++.... ............ ......+.=.++-.|.+...++..+||..|+..+-.++..+|. +
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 000000 0 000000000 000000000000 1111223333445555555688899999999988888776653 2
Q ss_pred c----HHHHHHHHHhhcCC-------------------C-----Ch--hHHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 000049 2109 G----VESLVSELLKGVGD-------------------N-----QA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTL 2158 (2629)
Q Consensus 2109 ~----~~~ll~~Ll~~l~d-------------------~-----~~--~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~L 2158 (2629)
. ++.++-.++..++. + .| ..-..|+..+..++.+.-..+...++.++..|
T Consensus 1386 ~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll 1465 (1780)
T PLN03076 1386 LWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLL 1465 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333333333221 0 01 22333444455554444344556677777777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcCcccccc
Q 000049 2159 IVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2159 l~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
..++..+++.+......||..++...+...-+.
T Consensus 1466 ~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1466 VSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 788888899999999999999998877654443
No 160
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.21 E-value=12 Score=50.59 Aligned_cols=390 Identities=20% Similarity=0.285 Sum_probs=190.9
Q ss_pred chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhHHhHHHHHHhccCCCC--hhHH-HHHHHHHhccc
Q 000049 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2629)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2629)
.+.+...+...+|.++..+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ + .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4466777778888888888999999999999999998887765 666544566777777776 3344 232111 1 12
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCH---HHHHHHHHHHHHHhhhcCCCCc---ccchHhhhHHHHHHHhcCCCHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSA---ETKKKAAQIVGNMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~---~vr~~a~~~l~~l~~~~~~~~~---l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2629)
....+...-..++|.+.+++..... .........+.-+++.....+. ..+.....- -...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFR--DSLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHH--HHHhhcc--hHHHHHc
Confidence 2334555666788888888874422 2222222222333333222111 000000000 0000111 0000111
Q ss_pred HHHHHHHHh----------hhCCCCchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhc
Q 000049 1640 ARAIGSLIR----------GMGEENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCS 1706 (2629)
Q Consensus 1640 ~~aL~~l~~----------~~g~~~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~ 1706 (2629)
+.-.+.+.. .......+.+-..-.+.+.... ....+....+.=-.+++-+....+ .+.++.++-...
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsa 247 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASA 247 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEe
Confidence 111111100 0000001111110001111100 000111111000011111111111 234445555556
Q ss_pred CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHh-hcC------CCChhHHHHHHHHHHHHHHH-hhhchhhhHHH
Q 000049 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA------DENESVRDAALGAGHVLVEH-YATTSLPLLLP 1778 (2629)
Q Consensus 1707 ~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~------d~~~~VR~~al~al~~iv~~-~~~~~i~~llp 1778 (2629)
+++..|...+-..+..+...+.+ .+.+..++...+. ++. --...+|...+.- +++. .+....+..+.
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~---L~kS~~Aa~~~~~~~~ 322 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSL---LSKSVIAATSFPNILQ 322 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHH---HHHhHHHHhCCccHHH
Confidence 67778888888887777665443 2333444444331 100 1123344433333 2222 12223455666
Q ss_pred HHhhccCCC--chHHHHHHHHHH---HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc
Q 000049 1779 AVEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2629)
Q Consensus 1779 ~l~~~l~d~--~~~vR~sa~~ll---~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~ 1853 (2629)
.+..++.+. +.|.|..+++.+ .....+++ ..++..++. -++..++...
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~----~i~~~g~p~~ 375 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRP----VILSQGWPLI 375 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHH----HHHhcCcccc
Confidence 777788777 778888888777 44332211 112222221 1222222222
Q ss_pred --------cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1854 --------SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1854 --------~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
...+...|..+.+++|.++...|..+..-+ .++..++..+.++..++|...-.||+.+...+..
T Consensus 376 ~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 376 QDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 224567999999999999999887664332 3456677777888999999999999998877643
No 161
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.21 E-value=0.52 Score=60.13 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhcc-----c----------
Q 000049 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R---------- 1919 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~-----~---------- 1919 (2629)
...|.+|.+.+..+++..++.+.+.+...+..++.... +.+|..+..|...++.+..+... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 46899999999999988777666666555555544322 45788889999999988755421 0
Q ss_pred -hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000049 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2629)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2629)
+...++|-|. .-.+..|-+|..+|..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234455554 2224557778888877765433222 346688999999999999999999887664
No 162
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.17 E-value=0.93 Score=56.80 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=82.9
Q ss_pred HHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh
Q 000049 2391 RVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2629)
Q Consensus 2391 ~i~-~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2629)
.++ .++...+.+.+..+|+.+.+|+|-.+.... +-....+.-+......++...+..+..++..++..++...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 444 555578888999999999999999887655 344455554444444446566767777888877766655543322
Q ss_pred -------HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhh
Q 000049 2470 -------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 2504 (2629)
Q Consensus 2470 -------~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~ 2504 (2629)
...+...+...+.++++.++..+++++.+++..+.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 35788999999999999999999999999988764
No 163
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.16 E-value=0.14 Score=57.65 Aligned_cols=126 Identities=22% Similarity=0.309 Sum_probs=77.1
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHh
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
.-++.|++++||.+|+.++..+.+..+ +++ ..+ ++...... .|... ...+..++-.+.++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L-------~~A-e~~~~~~~---------sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PFL-------AQA-EESKGPSG---------SFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HHH-------HHH-HhcCCCCC---------CcccH--HHHHHHHHHHHHHH
Confidence 345789999999999999999987532 221 111 11110000 11110 11223333333333
Q ss_pred ----h-cCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1585 ----L-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1585 ----L-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
+ .+.+..+-....+++..+.....-.+--..+++.++..+...+.+.+++||..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2 34456677778888888776432222223467788888888889999999999999999998753
No 164
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.53 Score=60.68 Aligned_cols=150 Identities=25% Similarity=0.367 Sum_probs=112.8
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc----ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~----l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
...-|.+.++|+-++..||..|+..+-++.-.. +|+. +...++.=...+..+|.|+.|.||..|...+..+...+
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 456688999999999999999999998877653 4432 23334444456788899999999999998887776643
Q ss_pred ----CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHh-hChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 000049 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2629)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~ 1725 (2629)
++....+++..+.+.+..++...+|.....++..++.. .....++.++|.+-..+.+....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33345667777777777777677899999998887653 2233568888888788889999999998888876654
No 165
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.93 E-value=1.2 Score=62.56 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=107.7
Q ss_pred hhhhhHhhhccchHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHH
Q 000049 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALL 1401 (2629)
Q Consensus 1323 ~L~~l~~~~~~~~~~ll~~ll~~L~~~-~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~ 1401 (2629)
.+..|++.++....+-+..+.+.+... .....|..-..+|... |-. .-+.++.+.+.+++-. .. .|..
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT~-----~av~~i~~~I~~~~~~-~~-ea~~ 416 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQA----GTN-----PAVKFIKDLIKSKKLT-DD-EAAQ 416 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----SH-----HHHHHHHHHHHTT-S--HH-HHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHc----CCH-----HHHHHHHHHHHcCCCC-HH-HHHH
Confidence 344455555444444455566655443 2233444333333322 211 3344566666554222 22 2334
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-------------hHHhhHHHHHhhhc
Q 000049 1402 AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-------------GVKLVLPSLLKGLE 1468 (2629)
Q Consensus 1402 al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-------------~v~~ilp~Ll~~L~ 1468 (2629)
.+..+......--..++..+.+.+-......++.+|.+|+.++..+....-.. ..+.+++.+...+.
T Consensus 417 ~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 417 LLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 45555443322122333333333221112246789999988888776632111 22455565555554
Q ss_pred ----cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC---CHHHHHHHHHHHHHHhhhcCchhHHhHHHH
Q 000049 1469 ----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2629)
Q Consensus 1469 ----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2629)
..+-..+..++.+||++.. +..++.+..++.+. ...+|.+|++||..++.... ..+.+.
T Consensus 497 ~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~ 562 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVREI 562 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHHHH
T ss_pred HHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHHHH
Confidence 3455677888999998853 56677777777665 78999999999998865543 233344
Q ss_pred HHhccCCCCh--hHH-HHHHHHHh
Q 000049 1542 LLMGLTDPND--HTK-YSLDILLQ 1562 (2629)
Q Consensus 1542 Ll~~l~d~~~--~~r-~al~~L~~ 1562 (2629)
++..+.|+.+ .+| .|+..+..
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHHHHh
Confidence 4444444433 466 56665543
No 166
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.87 E-value=1.6 Score=55.79 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000049 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2629)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~Al~al~~La~~~~~----------- 1412 (2629)
++....|++|...|..+++..+..... .++..+...++ ...+|+.+++|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 344466777777788888876655443 34455555543 345899999999999999964311
Q ss_pred -CchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHH
Q 000049 1413 -LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2629)
Q Consensus 1413 -~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2629)
.+..++. +++|-+. .-.+..|.+|..|...+..+-..+++.....++|.++..|.+++.-++..|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 1233333 4556555 334667889999999888888889988889999999999998887666555443
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.85 E-value=0.31 Score=54.48 Aligned_cols=116 Identities=18% Similarity=0.272 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh--chhh
Q 000049 1885 VLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA--GKSQ 1958 (2629)
Q Consensus 1885 ~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~--~~~~ 1958 (2629)
.+++.+++.+.+...-.|..|.+.+.+++.. .++. ++|.+++.+..+|+++++++...++.+|..++... -++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4455555666777777899999999999998 3443 57888999999999999999999999988874322 2477
Q ss_pred HHHhHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000049 1959 LLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d-----------~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2629)
+.+|+.+++|.+....+. ....+++...+++..+-...|+++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 899999999998733221 234455555666666666666544
No 168
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.81 E-value=0.27 Score=55.50 Aligned_cols=136 Identities=23% Similarity=0.252 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHhhhHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhccc------
Q 000049 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2629)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~~~~l~~~l~~Ll~~L------------~~~L~~~~~~~R~~A~~~L~~lv~~~~~~------ 1919 (2629)
.||..|+.++..+++. .++.+..|++.++|.- .-.+.|+++.+|..|+.++..+.+....-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3899999999999998 6777888888877642 33456899999999999999998654210
Q ss_pred -------h------hhhHH----HHHhhhcC-CCChhHHHHHHHHHHHHHHhhchhhH-HHhHHHHHHHHHHHhcCCcHH
Q 000049 1920 -------V------LPSII----PILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1920 -------~------l~~ll----p~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
+ +..++ ..|...+. +.++.+-...+.+++.++....-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 11111 22223344 34566777778888877765543333 456678888888888889999
Q ss_pred HHHHHHHHHHHHHH
Q 000049 1981 VRESAGLAFSTLFK 1994 (2629)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2629)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888887764
No 169
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.85 Score=57.36 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=86.2
Q ss_pred hccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhh
Q 000049 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2629)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~ 1930 (2629)
..+|.+..||++|+-+++-++-..+.. ++..++.|. +-|..+|...+-+||-.+...|....- .+|..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~---diL~~ 628 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT---DILEA 628 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH---HHHHH
Confidence 368999999999999998776554432 223333333 567889999999999888877776433 34445
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHH
Q 000049 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1931 ~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
.+.|+..-|||++|.+++-++.++.+ .+.+.+..|...+.+.+.|.+++
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNP-ELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCc-ccChhHHHHHHHHHHHHhhhhHh
Confidence 56688889999999999988877764 46667788888888888877654
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.36 Score=64.91 Aligned_cols=219 Identities=21% Similarity=0.170 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHhccCC------hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcC-hHHHHHHHHHHHHhh
Q 000049 2328 TVRSSAALALGKLSALSTR------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS-SAVKIRVYSVLKDLV 2400 (2629)
Q Consensus 2328 ~vR~~Aa~aLg~l~~~~~~------~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~-~~~~~~i~~~L~~~l 2400 (2629)
.-|.+|...||++..++|- --.++|..++.|+++..+.|....--+..|+.-- ++.. +-+.+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 3577788888888655441 2257888888888887888877666666665422 1111 111121122222223
Q ss_pred cC---CCHHHHHHHHHHHHHHHhcCChhHHH----HHHHHHHhhcCC-CCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000049 2401 YH---DDDHVRVSAASILGIMSQCMEDGQLA----DLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~~----~~l~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.+ -+++-|.++|..|..++..++-.+-. .++...+..+.+ +.+-.|+..+.+|..+-.+++..-+. +..+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-ccccc
Confidence 33 14689999999999999887754311 233323333444 35777888888998888877765332 23345
Q ss_pred HHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCc-------------hhhHHHH----HHHHhhcCCCCHHHHHH
Q 000049 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT-------------TVVVDIL----ASVVSALHDDSSEVRRR 2535 (2629)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~-------------~~l~~~l----~~l~~~l~~~~~~vr~~ 2535 (2629)
..+.+...+.+.-+++|.+|+.|+|.++.......++.. ......+ -.++..++|.++-||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 677888888999999999999999999986311100000 0122223 36677789999999999
Q ss_pred HHHHHHHHHhhCc
Q 000049 2536 ALSALKSVAKANP 2548 (2629)
Q Consensus 2536 al~~l~~~a~~~~ 2548 (2629)
.+..+..++..+-
T Consensus 723 v~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 723 VVVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHHHhhH
Confidence 8888887776543
No 171
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.73 E-value=11 Score=57.24 Aligned_cols=299 Identities=12% Similarity=0.096 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHH-hccC-------Ch-hHHHHHH
Q 000049 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTT----FIKCLQDSTRTVRSSAALALGKLS-ALST-------RV-DPLVGDL 2354 (2629)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~lp~L~~~----~~k~L~d~~~~vR~~Aa~aLg~l~-~~~~-------~~-~~ll~~L 2354 (2629)
-|...+.-|.+++..--..++-..+.+|.. |.+.-.+++..++.-|...|.++. ++-. ++ ..++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 355566666665543323344445665554 444434456778888888887773 2211 11 2455655
Q ss_pred HHhhh-cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc----CC---hhH
Q 000049 2355 LSSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQ 2426 (2629)
Q Consensus 2355 l~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~ 2426 (2629)
...++ ..+.++|+.+++++..++...+.++.. -=..|+.++.....++++.+-..+-+++..+... ++ .+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 55554 456899999999999999887766622 3345555555555566666666666666655422 22 233
Q ss_pred HHHHHHHHHhhcCCCC-chhhHhHHHHHHHH---HhhCC------------------------cc---ccC----ChhHH
Q 000049 2427 LADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---ISM----SPLFL 2471 (2629)
Q Consensus 2427 ~~~~l~~ll~~~~~~~-~~~~~~~~~~l~~~---l~~~p------------------------~~---~~~----~~~~~ 2471 (2629)
+..++.-+........ ...-..++..|..+ +.+.+ .. +.. ..+|-
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 3344433322211111 10111112122211 10000 00 000 13566
Q ss_pred HHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhc-CCCCchhhHH-HHHHHHhhcC------------------CCC--
Q 000049 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS-- 2529 (2629)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~l~~~l~------------------~~~-- 2529 (2629)
.++..+...+.+++++||..|+..+-+.+...+.. .|+.|..+.. +|-+++..++ +++
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 67777777788899999999999999888776654 4444433322 3444432221 111
Q ss_pred ------HHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhcc
Q 000049 2530 ------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2629)
Q Consensus 2530 ------~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 2587 (2629)
.+.-..|+..+..+-.+..+.+.+.|+.++..+..|+...|..+-...-.|+..+..-
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 2455567777777777777888889999999999999999988888888888877654
No 172
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.71 E-value=19 Score=46.45 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=114.1
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
..+.++-.+.+++..++..||..+++++..+...+++.++ .....++..+...+-|..+.||..|..++..+-+.-+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788899999999999999999998887655322 23455666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHH-HHHHHHHHhhhhhccch
Q 000049 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~-~a~~~l~~L~~~~g~~f 1731 (2629)
+ -......+...++++.+..+|+.+...+.. -....|-+++.+.+.+...|. -+..++..+.....-+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 233444666777888888888766433211 123456677777666554443 33344444433222222
Q ss_pred HhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
.+. +. .+-.++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 222 22 55567888888999888777653
No 173
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=21 Score=46.52 Aligned_cols=226 Identities=12% Similarity=0.238 Sum_probs=123.8
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA------------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~------------~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~ 1368 (2629)
++......++ ..+...++.+|+..+........ ..+++..++.-...++.+.+.+.+.-...+...
T Consensus 200 Li~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~ea 277 (559)
T KOG2081|consen 200 LITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEA 277 (559)
T ss_pred HHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHH
Confidence 3444444555 34566667777776665442211 122333333333345666555555544444432
Q ss_pred h------CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHcCCCC-
Q 000049 1369 F------GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQV- 1433 (2629)
Q Consensus 1369 l------g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--------~~~~~~v~~ilp~ll~~l~D~~- 1433 (2629)
. +++.. ..+++.+.-..... ++.+-+...-..-.+.+.+- ..|.||..+++..+.....=+.
T Consensus 278 f~~~i~~np~~~--l~~vellLl~~~h~-~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~ 354 (559)
T KOG2081|consen 278 FVVLISTNPEEF--LRIVELLLLVAGHN-DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPD 354 (559)
T ss_pred HHHHHhhCCCcc--hhHHHHHHHhccCC-chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCc
Confidence 1 12211 13444444333333 56555444443344443221 2478999999998887654221
Q ss_pred -----------HHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH
Q 000049 1434 -----------VAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2629)
Q Consensus 1434 -----------~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv 1501 (2629)
..-|....+.++.+...++.. .++.+.-.+.+ ....|+...+++-.+..++...+..-...+|+++
T Consensus 355 ~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl 432 (559)
T KOG2081|consen 355 QFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVL 432 (559)
T ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHH
Confidence 246777777777776655443 33444333333 4567999999999999998765544333344444
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-hhH
Q 000049 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI 1535 (2629)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i 1535 (2629)
..+.++ +....+|..++--+|.+.+.+.. |+.
T Consensus 433 ~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~~~p~~ 465 (559)
T KOG2081|consen 433 KLICNL--PEQAPLRYTSILLLGEYSEWVEQHPEL 465 (559)
T ss_pred HHHhCC--ccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence 443332 22334999999999999887753 444
No 174
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.83 Score=55.89 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=119.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhH------HHHHHHHh
Q 000049 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 2357 (2629)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~------ll~~Ll~~ 2357 (2629)
.+.+-|..+++-|..+++.++....-.--..+..++..+.+++.++|..|+..+|..+.-.|.+.. .+..|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356788899999999998876542211112345556688999999999999999999776665443 34567777
Q ss_pred hhc-CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCChhH--HHH-HH
Q 000049 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 2431 (2629)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~-~l 2431 (2629)
+.. .+..+|..++.|+...|.+..+....-..-.=+..|...+.+ .+...++.+...++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457899999999999998866554332222336677777877 466777889999999987655432 111 11
Q ss_pred HH-HHhhcCCCCchhhHhHHHHHHHHHhhCC
Q 000049 2432 QE-LLNLASSPSWAARHGSVLVFATFLRHNP 2461 (2629)
Q Consensus 2432 ~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~p 2461 (2629)
+. +..+....++.....+..++...+...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 21 2345556666666666666666665433
No 175
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.58 E-value=0.056 Score=41.74 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.53 E-value=1 Score=50.80 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV 2184 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~-~~~~~~~~~~il~~Ll~ll~d~d-~~V~~~a~~aL~~l~~~~ 2184 (2629)
..++.+...+.+.+.+.++..|-.++..++..++.. ..-+..+...+++.++..++.++ ..+.+.+..++..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 346777788888889999999999999999999887 45566888999999999998655 456788888888887543
No 177
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.52 E-value=21 Score=46.22 Aligned_cols=242 Identities=16% Similarity=0.197 Sum_probs=132.3
Q ss_pred cchHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHh------hhCCCCchhhHHHHHHHhccCCChHH-HHHHH
Q 000049 1614 IPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKSDNSNVE-RSGAA 1679 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d------~-~~~VR~~A~~aL~~l~~------~~g~~~~~~ll~~Ll~~L~~~~~~~~-R~~a~ 1679 (2629)
...++.++..+..-+.. | +..+-..|.+++|.+.. .+.++...-++...+..+.+...... .....
T Consensus 34 ~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l 113 (372)
T PF12231_consen 34 QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33444455544444432 2 56677889999998764 33334333456666666655443322 22222
Q ss_pred HHHHHHHHhhChhHH-----HhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChh
Q 000049 1680 QGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752 (2629)
Q Consensus 1680 ~~L~~i~~~~g~~~l-----~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~ 1752 (2629)
..++. ..++...+ ..++. .+..+.+ +...+-...+.++..+...++..+..+...-+|.++..+-+....
T Consensus 114 ~~ls~--Q~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ 190 (372)
T PF12231_consen 114 WCLSD--QKFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKD 190 (372)
T ss_pred HHHHc--CCCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 22221 12333222 22222 2222332 344455566777888887777777777777778888887777888
Q ss_pred HHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHH
Q 000049 1753 VRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2629)
Q Consensus 1753 VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~ 1831 (2629)
+|..|...+..+...++.. .+...+....+....+. +......+-+..++. +.++.-..-+...
T Consensus 191 ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~--------------~~~~~~~a~~iW~ 255 (372)
T PF12231_consen 191 IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIK--------------SKDEYKLAMQIWS 255 (372)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHh--------------CcCCcchHHHHHH
Confidence 9998877766665555432 22222222222222222 444444444455441 1011112223344
Q ss_pred HHHHHhch------hhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1832 AIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1832 ~l~~~Lg~------e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
.++..+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 256 ~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44555553 3556666666678888999999999999999876
No 178
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=26 Score=50.80 Aligned_cols=173 Identities=16% Similarity=0.114 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHhccCchhHHHHHHHHHHHHcCC
Q 000049 1355 RRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSD 1431 (2629)
Q Consensus 1355 R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La--~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2629)
...++.|......+. |..... .++..+.....+...|++|.+.+..+..+. ..++ .++....+|-..+...+.|
T Consensus 1504 ~~~a~~~~~lm~~~~~~~~l~~--e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D 1580 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQP--EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLND 1580 (1710)
T ss_pred HHHHHHHHHHHHhhccchhhHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcc
Confidence 334455554444433 333332 566667665666668999998776665543 2344 3556667888888889999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~ 1509 (2629)
.+..||+.|..++.-++..-.-..+..........+.. .+--..|+|+..||+++-..|-.+...+|+.+..+.....
T Consensus 1581 ~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1581 DQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred hHHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 99999999998887776532111111111122222222 2334578999999999988888776666666666666666
Q ss_pred CCCHHHHHHHHHHHHHHhhhcC
Q 000049 1510 DTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
|+ ..++.++-+++..|-....
T Consensus 1661 e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1661 ES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred Cc-hHHHHHHHHHHHHHHHHhh
Confidence 65 6778888888887765443
No 179
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.78 Score=54.53 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=107.1
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH---hhHHHH
Q 000049 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSL 1463 (2629)
Q Consensus 1387 l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~---~ilp~L 1463 (2629)
+.++ ||...-.++..+..+++.-++.+.+.+..++..+.+.++++...|-.+|+.++..+++.++..... ..+-.|
T Consensus 97 L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 799999999999999987777788888899999999999999999999999999999988776543 222223
Q ss_pred HhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
+-.-..++-.++..+-.+|.+|.+....+ .+++.|..++.+.++.+|..++.+...+...++
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 33333456678889999999998864332 356667777899999999999988877766554
No 180
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.82 E-value=28 Score=44.98 Aligned_cols=214 Identities=18% Similarity=0.179 Sum_probs=128.8
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hc--H---HhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LS--A---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~--~---~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
|...+..++..++.+=+.+. +-+....-+..++.. ++ + ..+..++-.++.++++++..+|.-++++|..+..
T Consensus 43 f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 43 FSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred hHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 55555566677776655442 222333344444441 11 1 1356777788889999999999999999988887
Q ss_pred hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhcc-CCCChhHHH-HHHHHHhccc
Q 000049 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTTF 1565 (2629)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~~r~-al~~L~~~~~ 1565 (2629)
+..+.-......+...+.+-+-|..+-||..|..+|..+-+.-.|++. .+...|...+ +||+..+|. ++-.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v--- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV--- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee---
Confidence 765543344566777788888899999999999999998766555543 2333444444 589888884 4333211
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~-~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
+. .-.|.+.....|-+...|+... .++-.++..... ++.+. +. .+...+.|....||.++..++.
T Consensus 197 ----dn----sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l--si~kr---i~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 197 ----DN----STYPCILERARDVSGANRRMVYERCLPRIGDLKSL--SIDKR---IL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred ----CC----CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc--cccce---eh-hhhhcchhhhhhHHHHHHHHHH
Confidence 11 1235555555555554444432 233333221101 11111 22 5566777888889998888876
Q ss_pred HHH
Q 000049 1645 SLI 1647 (2629)
Q Consensus 1645 ~l~ 1647 (2629)
.--
T Consensus 263 ~~w 265 (885)
T COG5218 263 SAW 265 (885)
T ss_pred HHh
Confidence 643
No 181
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=8.8 Score=50.27 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred HHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHH---HHHHhhcCCCHHHHHHHHHHHHHHHhh----hC
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSR---LLDQLMKSDKYGERRGAAFGLAGVVKG----FG 1370 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~---ll~~L~~~~~~~~R~~Aa~~L~~l~~~----lg 1370 (2629)
+.+..+|+.++.+||..++..+-.+.+..+++. ..+++. .+..|..++=..+|..|..++..+... ++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 556778888999999988887776666554432 223332 233344444457999999998888764 24
Q ss_pred cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1371 ~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
+..+. +++..+.+-+..+....+|-+...++..+....- --+.+..++|.+-..+.|....||-++.+.+..+-.
T Consensus 257 ~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~- 331 (1005)
T KOG1949|consen 257 PTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA- 331 (1005)
T ss_pred HHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh-
Confidence 44443 4566665555444456889888888888775432 346677889988888999999999999877766522
Q ss_pred hcHHhHHhh--HHHHHhhhccCCh
Q 000049 1451 LSAQGVKLV--LPSLLKGLEDKAW 1472 (2629)
Q Consensus 1451 l~~~~v~~i--lp~Ll~~L~~~~w 1472 (2629)
.....+-.+ +..++..|+.++-
T Consensus 332 vra~~f~~I~~~d~~l~~L~~d~~ 355 (1005)
T KOG1949|consen 332 VRAAKFWKICPMDHILVRLETDSR 355 (1005)
T ss_pred hhhhhhhccccHHHHHHHHhcccc
Confidence 111122222 3345555555443
No 182
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.61 E-value=8.8 Score=49.66 Aligned_cols=67 Identities=24% Similarity=0.246 Sum_probs=45.5
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccc--hhhh--HHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1886 LMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1886 Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~--~l~~--llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2629)
++..|++.+. +.++.+-..|+.=+|++++..+.. ++.. .-..+.+.+.++|+++|..|..++..++.
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4455555553 455666677888889999887533 3221 23345567788999999999999887653
No 183
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.47 E-value=8.2 Score=50.81 Aligned_cols=220 Identities=19% Similarity=0.210 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1900 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
..|..|+++||.++...+......+.. .|..+|+++..-.|..++..+.+...........+..+.+.+.+...|.++.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 468999999999999987765555554 6888899999999999999888877655432222113455566666666332
Q ss_pred -----------HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcC---chhHHHHHHHHHHhhhccCcCcc-----
Q 000049 1979 -----------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPH----- 2039 (2629)
Q Consensus 1979 -----------~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~----- 2039 (2629)
..+|..+...+..+.. .|... ..-+|.|-...+.+. .....++....+++...+.....
T Consensus 182 ~~~Y~El~~~l~~lr~ec~~Ll~~f~~-~g~~~-~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~ 259 (441)
T PF12054_consen 182 PPYYDELVPSLKRLRTECQQLLATFRD-VGKVP-PSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQ 259 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC-hhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 2345444444444433 33311 111121111111000 00001111111111000000000
Q ss_pred ---cchhhhcCC-------------CchhHHHHHHHHHH--HhCCChhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHH
Q 000049 2040 ---ILPKLVHLP-------------LSAFNAHALGALAE--VAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAET 2100 (2629)
Q Consensus 2040 ---Lip~L~~~~-------------~~~~~~~aL~~La~--~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~ 2100 (2629)
....|.+.. ......+..++++. +.-..+++.++.++..||+.++ .++..++..+..++..
T Consensus 260 k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~ 339 (441)
T PF12054_consen 260 KLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLAR 339 (441)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 011111000 00012223333332 2234577788999999999995 5668889999999988
Q ss_pred HHhhccc--cc-HHHHHHHHHhhc
Q 000049 2101 VTLVIDE--EG-VESLVSELLKGV 2121 (2629)
Q Consensus 2101 l~~~~~~--~~-~~~ll~~Ll~~l 2121 (2629)
++..+.. .+ -+.++..|+..+
T Consensus 340 Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 340 LIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHhCCCCCCcHHHHHHHhhhh
Confidence 8875431 22 355555555543
No 184
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=40 Score=45.45 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=58.6
Q ss_pred HHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000049 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2629)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~---l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~ 1918 (2629)
+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+.-.|.++++..+.
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 3333344566678899999999999999988777654 466777888889999999999999999999987654
No 185
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.31 E-value=2.2 Score=48.16 Aligned_cols=139 Identities=23% Similarity=0.132 Sum_probs=101.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2629)
+..-+.+.+.+.+++.|-.++..++.+++..+.+.+..+.......++.+++...+..++..++.++..++......
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~--- 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK--- 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC---
Confidence 34445555667788999999999999999987788877778888888999988778889999999999988765431
Q ss_pred chHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH
Q 000049 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2629)
Q Consensus 2310 ~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2629)
.+-.|..+ .|++..+++.++..++. ......++++|..++...+..+ .++.
T Consensus 103 ----------------p~l~Rei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~-rp~~ 153 (165)
T PF08167_consen 103 ----------------PTLTREIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF-RPFA 153 (165)
T ss_pred ----------------CchHHHHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc-cchH
Confidence 11233322 25566677777777654 4567788889999988776666 6777
Q ss_pred HHHHHHHHHhh
Q 000049 2390 IRVYSVLKDLV 2400 (2629)
Q Consensus 2390 ~~i~~~L~~~l 2400 (2629)
.++-..+...+
T Consensus 154 ~ki~~~l~~ll 164 (165)
T PF08167_consen 154 NKIESALLSLL 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 77766665543
No 186
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.29 E-value=5.7 Score=55.08 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=90.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHhhc-
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD----QVVAVREAAECAARAMMSQLS- 1452 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D----~~~~VR~aa~~al~~i~~~l~- 1452 (2629)
.-+.++.+.+.+++ -...+ +..++..+......--. +++..++..+.+ +++.+|..|+.++..+....-
T Consensus 357 ~a~~~i~~~i~~~~-~~~~e-a~~~~~~~~~~~~~Pt~----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 357 PALKFIKQWIKNKK-ITPLE-AAQLLAVLPHTARYPTE----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHHcCC-CCHHH-HHHHHHHHHHhhhcCCH----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 34556667776543 22222 33334444433322122 344444444443 467899999888887766321
Q ss_pred ------HHhHHhhHHHHHhhhcc----CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc---CCCHHHHHHH
Q 000049 1453 ------AQGVKLVLPSLLKGLED----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAG 1519 (2629)
Q Consensus 1453 ------~~~v~~ilp~Ll~~L~~----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA 1519 (2629)
...+..++|.+.+.|.+ .+-..+...+.+||++.. +..++.+...+. +..+.+|.+|
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~A 500 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAA 500 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHH
Confidence 11235667776665543 344456677888887753 334444444443 3467899999
Q ss_pred HHHHHHHhhhcCchhHHhHHHHHHhccCCCC--hhHH-HHHHHHHh
Q 000049 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQ 1562 (2629)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~~r-~al~~L~~ 1562 (2629)
++||..++..... .+.+.++....++. ..+| .|+..+..
T Consensus 501 v~Alr~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 501 ILALRNLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 9999998865442 23333444444433 3466 56655543
No 187
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.09 E-value=1.7 Score=50.70 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcChhhhhhchhhhhHHHHHHh-----cCCCCH-----hHHHHHHHHHHHHHHhcCCCccCchHHHHHHH
Q 000049 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2249 aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-----~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~ 2318 (2629)
.......+.+... --+.||+.++.+.++-++ +.. +. .+|..|...++.++.+.+...+..-|.+.+++
T Consensus 256 v~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTl 333 (450)
T COG5095 256 VVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTL 333 (450)
T ss_pred HHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHH
Confidence 3444445554433 345788777766655433 332 22 38889999999999999999998899999999
Q ss_pred HHHcCCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhh
Q 000049 2319 IKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQ 2359 (2629)
Q Consensus 2319 ~k~L~d~--~~~vR~~Aa~aLg~l~~------~~~~~~~ll~~Ll~~l~ 2359 (2629)
+|.+-|. .....-.|.+++..+.. +.|+.+-+...+-+.+.
T Consensus 334 lKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 334 LKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 9998885 45667778888877722 35777766655554443
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=1.8 Score=58.84 Aligned_cols=211 Identities=21% Similarity=0.185 Sum_probs=124.0
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHH-----HHHhhcCC--CHHHHHHHHHHHHHHHhhhC-
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRL-----LDQLMKSD--KYGERRGAAFGLAGVVKGFG- 1370 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~l-----l~~L~~~~--~~~~R~~Aa~~L~~l~~~lg- 1370 (2629)
-.|++.+++.|..+..+.+...+---..++..-+.-+.+++..- +..|..+. +.+.|-.|+..|+.++.++.
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 36899999999999877765433221111111111122232221 11111111 24678999999999998753
Q ss_pred -cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 1371 -ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2629)
Q Consensus 1371 -~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~-~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~ 1448 (2629)
.+.--..+++......+++...|.-|+-.+.++|.|.+.... .+...-......++..+.|+.++||.+|..|++.+.
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL 670 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh
Confidence 333223467777777777643689999999999999876552 111111245667788899999999999999999998
Q ss_pred HhhcHHh--HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1449 SQLSAQG--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1449 ~~l~~~~--v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
...++.. -...+...+. |++.. .++ ........-.++..++|..+-||.....+|..+
T Consensus 671 ~~~~d~fde~~~~~~~~~~-l~~~~-----~~~--------------E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 671 SNGSDNFDEQTLVVEEEID-LDDER-----TSI--------------EDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred cccccccchhhhhhhhhhc-chhhh-----hhH--------------HHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 7653320 0111111111 10000 000 000111112466788999999999999999888
Q ss_pred hhh
Q 000049 1527 GSV 1529 (2629)
Q Consensus 1527 ~~~ 1529 (2629)
+..
T Consensus 731 ~~g 733 (1387)
T KOG1517|consen 731 VVG 733 (1387)
T ss_pred HHh
Confidence 753
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.72 E-value=0.84 Score=51.00 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=83.9
Q ss_pred HhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh---Chh
Q 000049 1617 IGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV 1692 (2629)
Q Consensus 1617 l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~---g~~ 1692 (2629)
+|.+++.+...+. +.++.+|..+.+++|.++. +.+-.+.... ......... .-............+. ..+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQ----KSLDSKSSE-NSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhccc----ccCCccccc-cccccchhhHHhhccCCCchHH
Confidence 4788888888887 4579999999999999865 2211111000 000000000 0000000111111112 122
Q ss_pred HH-HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000049 1693 YF-EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1693 ~l-~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv 1765 (2629)
++ .-.+..+++.++++ -..-+...++++..+....|....||+++++|.++..+....+..|+..+.-+..++
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 32 33455666666664 233455677888888888888889999999999999998777777777666665554
No 190
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.57 E-value=14 Score=45.74 Aligned_cols=218 Identities=20% Similarity=0.181 Sum_probs=139.9
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hhC-cchh-hhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-C
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-L 1413 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg-~~~l-~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~-~ 1413 (2629)
-++..+.......+|..-..+..-|..+.+ ..+ ...+ .+..+...|.+++...-..-+-.-|+..+..+.+..|. .
T Consensus 11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~ 90 (307)
T PF04118_consen 11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG 90 (307)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 344555555555677776666666666665 211 1111 12356778888887765555666799999999998883 3
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2629)
+...+.-..|.++..+......||-.-...+...+-.+++. ..+.++..++.+++++.-.....+..++..+.....
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 55555566788888888888899988888887776666663 235556666677887776666677777777765433
Q ss_pred hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---------------chhHHhHHHHHHhccCCCChhH-H
Q 000049 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-K 1554 (2629)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~lvp~Ll~~l~d~~~~~-r 1554 (2629)
.. .++..++.++- ++|.+|..|..-+..-..... .++..-++..+...+.|.+--+ |
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 22 23444554444 378889888766554332222 1233446777888888887655 4
Q ss_pred HHHHHHHh
Q 000049 1555 YSLDILLQ 1562 (2629)
Q Consensus 1555 ~al~~L~~ 1562 (2629)
.+++.+..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 67887764
No 191
>PF05536 Neurochondrin: Neurochondrin
Probab=92.32 E-value=57 Score=44.42 Aligned_cols=245 Identities=18% Similarity=0.198 Sum_probs=125.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcH-----HHHHHHHhcCC------CCHHHHHHHHHHHHH
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI-----AATLREGLADR------NSAKRREGALLAFEC 1405 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i-----~~~L~~~l~~~------~~~~~R~~Al~al~~ 1405 (2629)
..++.++..|...+ ...|..+...+..++++-.........+ .+|+...+... .....+..|+..+.+
T Consensus 5 ~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455555554444 3556666665666665322111100001 23455555431 123455566666666
Q ss_pred HHHHhccCchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHH
Q 000049 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1406 La~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ 1484 (2629)
++.-..-.-.|-+..-+|.++..+..... .+-+-|.+++..++. ++.+-
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~---------------------------- 133 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGA---------------------------- 133 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhH----------------------------
Confidence 66511111235566778888887765544 444444444444431 11111
Q ss_pred HHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1485 la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
+.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 134 ------~aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~--------------------------- 177 (543)
T PF05536_consen 134 ------KALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE--------------------------- 177 (543)
T ss_pred ------HHHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh---------------------------
Confidence 11111 3455666666655 67778888888887766543110000
Q ss_pred ccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC-C---CcccchHhhhHHHHHHHhcC-CCHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKVLVD-PIPEVRSVA 1639 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A 1639 (2629)
....+..+++.+.+.+.......+-..+..++.+....+. + ..-....+.+..++...+.+ ..+.-|..+
T Consensus 178 -----~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 178 -----DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred -----hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0001112222333333322334455566666666654310 0 11223567788888888875 467889999
Q ss_pred HHHHHHHHhhhCCC
Q 000049 1640 ARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1640 ~~aL~~l~~~~g~~ 1653 (2629)
....+.+....|.+
T Consensus 253 l~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 253 LNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHhChH
Confidence 99999999988865
No 192
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=53 Score=44.03 Aligned_cols=293 Identities=12% Similarity=0.090 Sum_probs=168.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccc-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh--chhhhhhhH
Q 000049 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 2151 (2629)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~-~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~--~~~~~~~~~ 2151 (2629)
|++.++..++++..-++..+++.+..+-....+.+ .-.+.+...+.+++.+..++..|+.++..+..+ ....++.|+
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 44555666777888889999998888844443333 556677777778888889999999999988654 345688999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhH
Q 000049 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2629)
Q Consensus 2152 ~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~il 2231 (2629)
|.+++.|+.+-++-+.++.....+.+-.-+...-..+-+.+...+.+..-
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFl------------------------------ 590 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFL------------------------------ 590 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHH------------------------------
Confidence 99999999999888777766555544333222222233334443333221
Q ss_pred HHHHHHHhcC------CHHHHHHHH---HHHHHHHhhcC-hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000049 2232 PIFLQGLISG------SAELREQAA---LGLGELIEVTS-EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2232 p~ll~~L~~~------~~~~r~~aa---~~L~~l~~~~~-~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2629)
.+....++++ ..+...+|. .++..++-... ...+-.++.....|.+..+-+..-.+.-..+++.+....-
T Consensus 591 kiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 591 KIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred HHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 1111112211 112222332 22333332221 0112334445555555544333334455555555543222
Q ss_pred hcCCCccCchHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccC-------ChhHHHHHHHHh-hhcCCH--HHHHHHH
Q 000049 2302 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALST-------RVDPLVGDLLSS-LQVSDA--GIREAIL 2370 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~L~d~~-~~vR~~Aa~aLg~l~~~~~-------~~~~ll~~Ll~~-l~~~d~--~vr~~~l 2370 (2629)
.. ..+.|..+.+.+.+.+++.++. ...-..++-++.+++.++. -.-..+-++... +.+.+. .=+..++
T Consensus 671 ~s-keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc 749 (970)
T COG5656 671 MS-KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC 749 (970)
T ss_pred HH-HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence 11 2344677788888889988874 3566677788888877652 122233333333 223222 3345566
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHH
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKD 2398 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~ 2398 (2629)
+-+.+++-..++.+..+|++...+....
T Consensus 750 ~i~e~l~Ln~rd~Ll~qy~plfi~vags 777 (970)
T COG5656 750 RIIESLILNIRDELLSQYLPLFISVAGS 777 (970)
T ss_pred HHHHHHHHHccchhHHhhhHHHHHHHhh
Confidence 6677777777777777788876666653
No 193
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.29 E-value=46 Score=43.31 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHhhh-cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHH---HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000049 2472 SILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2472 ~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~l~~~l~~~~~~vr~~al~~l~~~a~ 2545 (2629)
+++..|.+.+ +++++.+-.-|..-+|.++.+.... ..+.+ .=..+++.+++++++||..|+.++..+--
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4556666666 3445554444555688887775211 12222 23467788889999999999999987743
No 194
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.07 E-value=1.4 Score=49.21 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccCCh----------------------------------hHH-----
Q 000049 2311 LPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRV----------------------------------DPL----- 2350 (2629)
Q Consensus 2311 lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~~----------------------------------~~l----- 2350 (2629)
.|+|.+.+++.+..+ +..+|..+.++||.+..++|.. +.+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 389999999998886 8999999999999995543211 111
Q ss_pred HHHHHHhhhcCC-HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000049 2351 VGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2629)
Q Consensus 2351 l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2629)
+..|+..++++. ..-...+++|+-.++...|... .+|.+.+++.+...+...++..|+..-.-|+.|..
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 123444444433 3444566777777776666665 67777777777777776666666665555555543
No 195
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.93 E-value=49 Score=42.88 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=53.8
Q ss_pred ccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhh--hhhchhhhhHHHHHHhcCCCCH----hHHHHHHHHHHH
Q 000049 2225 KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS--LKEFVIPITGPLIRIIGDRFPW----QVKSAILSTLSI 2298 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~--l~p~v~~i~~~Li~~l~~~~~~----~vk~~al~~L~~ 2298 (2629)
..++..+.+...++.++++.+|.+|..++..++.....+. .+..+.-+..|+...+..+... +++..++..++.
T Consensus 270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 3566777788888999999999999999999998654322 2344455667777666654444 667777777765
Q ss_pred HH
Q 000049 2299 II 2300 (2629)
Q Consensus 2299 L~ 2300 (2629)
++
T Consensus 350 ll 351 (372)
T PF12231_consen 350 LL 351 (372)
T ss_pred hH
Confidence 55
No 196
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.76 E-value=6.6 Score=52.40 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
.+++.+...+...+....+.--.+-+..+.+....+.+.. .|++.|....++. +...++.++..+..+++.++ .+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~-~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~ 423 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKE-KILPLLYRSLEDS-DVQIQELALQILPTVAESID---VP 423 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHH-HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HH
Confidence 4555555555444433455555555666777777766653 7999999999887 78899999999999999887 24
Q ss_pred HHH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1417 YVI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1417 ~v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
.+. .++|.+.. ++...+..|+..+..|+..+++.+....+-..++.+.+.....+.....+.+.+...++...+....
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 444 47777655 4467788999999999999998888887767777777888778888888888877776665544211
Q ss_pred hhccchHHHHhhhhcC
Q 000049 1495 QCLPKIVPKLTEVLTD 1510 (2629)
Q Consensus 1495 ~~L~~ivp~L~~~L~D 1510 (2629)
-....++|.+..+...
T Consensus 504 v~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 504 VMAENVLPLLIPLSVA 519 (700)
T ss_pred eehhhhhhhhhhhhhc
Confidence 1224455555555443
No 197
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.55 E-value=5.2 Score=51.51 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhh
Q 000049 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2629)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~----------~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~ 1930 (2629)
.+++..++..|.--.+.+|+..++|.++.++- +.+|..|-.|+..+..++..++.. ..+.++.++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34455566666555667888888888887764 356889999999999999988765 45778888888
Q ss_pred hcCCC--ChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhc
Q 000049 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2629)
Q Consensus 1931 ~L~d~--~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2629)
.+.|+ ......|+..+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 87764 5678889998888764322222223344444444444443
No 198
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.23 E-value=37 Score=40.80 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=123.6
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000049 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2629)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~L 2354 (2629)
.|+..++...+++.....+.+|..++..-. ...|.+.+++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344445555678888899999998877531 4456777777766666677777788888888877777776777766
Q ss_pred HHhh--h------c--CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCC
Q 000049 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+..+ + + ...+...+...+++.++...+. .-..++..+...+ .+.++.++..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 6551 1 1 1255566666788888876544 3345555566666 67788888888888888883211
Q ss_pred hhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhcCCChhHHH
Q 000049 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLRE 2490 (2629)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~ 2490 (2629)
- ++.+.++-+...+..+. +-.....++.++.--|...++ ..+...++..+.+...+.+.....
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~ 221 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVAS 221 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHH
Confidence 1 23334443333332222 222333344444333333222 234567788888877777654333
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.01 E-value=5.7 Score=55.76 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=77.2
Q ss_pred chhhHhHHHHHHHHHhhC-Cc-----------cccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCC
Q 000049 2443 WAARHGSVLVFATFLRHN-PS-----------AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPAN 2510 (2629)
Q Consensus 2443 ~~~~~~~~~~l~~~l~~~-p~-----------~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~ 2510 (2629)
...+..+.+++..++... .. ......+.+.+...+.......+..-+..++.|+|.+=.
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------- 519 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---------
Confidence 345666777777776421 11 111223444555555555556667778889999997521
Q ss_pred chhhHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhcc
Q 000049 2511 TTVVVDILASVVSALH---DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2629)
Q Consensus 2511 ~~~l~~~l~~l~~~l~---~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 2587 (2629)
...++.+...+. +.+..+|.+|+.+++.++..+|+.+++.+ +|. |....++. .||.|| +..|++-
T Consensus 520 ----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l---~~I-~~n~~e~~-EvRiaA---~~~lm~~ 587 (618)
T PF01347_consen 520 ----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREIL---LPI-FMNTTEDP-EVRIAA---YLILMRC 587 (618)
T ss_dssp ----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHH---HHH-HH-TTS-H-HHHHHH---HHHHHHT
T ss_pred ----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHH---HHH-hcCCCCCh-hHHHHH---HHHHHhc
Confidence 133444444443 44899999999999999998988776533 343 44443333 488766 5566666
Q ss_pred ccCchhHHHHHHHh
Q 000049 2588 TRGSEYIQGAQKFI 2601 (2629)
Q Consensus 2588 ~~~~~~~~~~~~~l 2601 (2629)
......++.+..++
T Consensus 588 ~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 588 NPSPSVLQRIAQSL 601 (618)
T ss_dssp ---HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44455555555444
No 200
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=90.93 E-value=73 Score=42.91 Aligned_cols=342 Identities=16% Similarity=0.187 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhc
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~-~g~~~~~~ll~~Ll~~L~ 1667 (2629)
++++-..+.++++.+.+-.+- .-+. -+..++.+...+. ..++|.+|+.|+-.++.. +.+-.--.++..|.+.++
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 677777788888877665421 1111 2335566666665 478999999999887763 222111123333322221
Q ss_pred -----cCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhh-cCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHH
Q 000049 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2629)
Q Consensus 1668 -----~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l-~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ 1741 (2629)
+.+ ..+-......++.++.+.|.+.. .+.+.+ +..+...++.+.. -+..++|.
T Consensus 281 lfg~~s~d-q~~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~---------------~ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSAD-QMDDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLS---------------ILLEIVPY 339 (980)
T ss_pred HHhhhccc-cccCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHH---------------HHHHHHHH
Confidence 111 00111233446667777776521 111111 2234444443322 23347788
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcccc--ccC-C
Q 000049 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL--LEG-G 1818 (2629)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~--~~~-~ 1818 (2629)
+++.+.++++++-......+...+..+... + .+.++. +.-.. ..+-....++.- .++- .++ .
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl------~----~ls~~q-k~~l~--~illai~kqicy--demy~nddn~t 404 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL------K----ALSSPQ-KVPLH--KILLAIFKQICY--DEMYFNDDNVT 404 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc------c----cccchh-hccHH--HHHHHHHHHHhc--cHHhhcccCCC
Confidence 888988887776554444333322211100 0 000100 00000 001111111100 0000 000 0
Q ss_pred CCCCcccHHHHHH---HHHHHhc---hhh----HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhH--------h
Q 000049 1819 SDDEGASTEAHGR---AIIEVLG---RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--------K 1880 (2629)
Q Consensus 1819 ~ede~~~~~~~~~---~l~~~Lg---~e~----~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--------~ 1880 (2629)
++|+++.-++.++ .+.+.++ ++. ..+.++.-.+...+.++..-+.|+..+-.+.+..+... .
T Consensus 405 g~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s 484 (980)
T KOG2021|consen 405 GDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIS 484 (980)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCcccc
Confidence 1111111222222 2222222 121 11222332334567788888999998888877544211 1
Q ss_pred --hhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--cchhhhHHHHHh--hhcCCCChhHHHHHHHHHHH
Q 000049 1881 --EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSE 1949 (2629)
Q Consensus 1881 --~~l~~Ll~~L~~~--L~~~~~~~R~~A~~~L~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~aL~~ 1949 (2629)
..+..+++.++.. ..++++ ..+...+..+++.. . +...|.++..+. +++...+..||..+.+....
T Consensus 485 ~~~vl~~~~~ll~tsqv~~h~h~---lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 485 TSQVLFLNELLLMTSQVLAHDHE---LVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHHHHHHHcccccCCch---HHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHH
Confidence 1112223333221 223444 44444454455432 1 123455555444 36777889999999998888
Q ss_pred HHHhhchhhHHHhHHHHHHHHHHHhc
Q 000049 1950 VMASAGKSQLLSFMDELIPTIRTALC 1975 (2629)
Q Consensus 1950 li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2629)
.++... ..+.+|.+.++..+...|.
T Consensus 562 fVKlLk-kqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 562 FVKLLK-KQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 877653 4567788888888877773
No 201
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.92 E-value=22 Score=44.12 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=132.4
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH----HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
.+...|.++|...-+.++-..+......+...+|.+.+ .-..|.++..+....-.||...+..+...-..+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 34456667776665667777888888889999998865 23456666667777788999999999988878899999
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcc
Q 000049 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k 1812 (2629)
|.+..++..++.++.|+..++-+.+...+..+...++.+ .+...+...+- .+...|..++..+..-+.... .
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~---~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQ---N- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh-cCcchhHHHHHHHHHhCCccc---c-
Confidence 999999999999999988888888888888887776655 23333333222 234567777766554332111 0
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1813 ~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
++..... ......++. .-.-++.+++.++.|.+.-|++.+++.+-.-..
T Consensus 206 -------~~~~~~~----~~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 206 -------DELSLSS----EEQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred -------cccccch----HHHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 0000000 011122332 122366777888899999999999988755443
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.81 E-value=6.4 Score=51.50 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=69.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l 2307 (2629)
++..++..+-.++..-...-..-+..++...++..+.+....+..-+.+.+... +..|-..|+..+. .++.-+...-
T Consensus 256 ~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 256 VIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 333344444444444444557788999998888888888888887788887764 7778777777664 2233222221
Q ss_pred cCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccC
Q 000049 2308 KPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 2345 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~ 2345 (2629)
...+|-+.+.+.+..... |.+||..|..++..+..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 223344444444433333 89999999999999877654
No 203
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.79 E-value=5.6 Score=53.04 Aligned_cols=169 Identities=11% Similarity=0.123 Sum_probs=110.7
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1575 ALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
..+.|.|...++- .+.++...-.+-+..+.+... ++ .+.+.++|.|...+++.+..++..+...++.+++.+.-.
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~-~e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTP-PE---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC-hH---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3455666655542 223344334444444454432 22 356789999999999999999999999999999987644
Q ss_pred C-chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchH
Q 000049 1654 N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1654 ~-~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
. -..++|.+...........++..+..+++.+++.+..-..-+.++.+.+..+..++.+..+...++..++......-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 3 346777776554444555678888899999987766554444455667777778888888888888877755433211
Q ss_pred hhHHhHHHHHHhhcC
Q 000049 1733 NYLQQVLPAILDGLA 1747 (2629)
Q Consensus 1733 p~l~~ii~~ll~~L~ 1747 (2629)
-..+.++|.+.....
T Consensus 504 v~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 504 VMAENVLPLLIPLSV 518 (700)
T ss_pred eehhhhhhhhhhhhh
Confidence 123456666665543
No 204
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=90.64 E-value=73 Score=42.47 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchh-
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL- 1921 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l- 1921 (2629)
++...+...+.|++..|...+..++..++-.++.--..++ ...+..+.+.+.++++..|..+.++|..+.-...+...
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~ 498 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF 498 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence 4445555556888889999999999888865442111222 24567788888999999999999999988755444321
Q ss_pred ---h-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000049 1922 ---P-SIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1922 ---~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2629)
. .....+....+|+++.|..++...+..+...
T Consensus 499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 499 QLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 1 1122344567789999998888877776543
No 205
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.32 E-value=12 Score=47.87 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH----hhchh
Q 000049 1883 MPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKS 1957 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~----~~~~~ 1957 (2629)
-+.+...+...+. +.++........+++.....++..+-+.++..+..++.++.+.+|..-+..+++++. .....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3444445555454 578888899999999888888666778899999999999998899999999998876 22223
Q ss_pred hHHHhHHHHHHHHHHHhcCCcHH
Q 000049 1958 QLLSFMDELIPTIRTALCDSILE 1980 (2629)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~d~d~~ 1980 (2629)
...++++.++..+.+....+.+.
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 33445555555555555555443
No 206
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.29 E-value=4.3 Score=51.65 Aligned_cols=75 Identities=31% Similarity=0.398 Sum_probs=55.5
Q ss_pred cccchHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhccCCC-hHHHHH
Q 000049 1612 DMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNS-NVERSG 1677 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~----------d~~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll~~L~~~~~-~~~R~~ 1677 (2629)
.+.+|+..++|.+..++. +..|.+|..|+..++.+++.++..+ .+.++..+.+.+.+... .....|
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 478999999999998873 4578999999999999999998763 24455555555655443 334668
Q ss_pred HHHHHHHHH
Q 000049 1678 AAQGLSEVL 1686 (2629)
Q Consensus 1678 a~~~L~~i~ 1686 (2629)
+..+++.+.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 887777653
No 207
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=10 Score=46.80 Aligned_cols=180 Identities=19% Similarity=0.173 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLL 1663 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~---~~-~~ll~~Ll 1663 (2629)
.+.+.|..|.+-+..+++-+....++.++ . .+..+...+++.+..+|+.|+..||+.+...+.. .+ ...++.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 45677888888888877766554444433 2 3333444889999999999999999999865432 11 23677888
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHhhChh--HHHhH--hHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHh
Q 000049 1664 DALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHI--LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2629)
Q Consensus 1664 ~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~l~~l--lp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ 1737 (2629)
..+.++.+..+|..+..+++.+++..... .+-.+ ...+...+++ .+...+.-++.++..+...-...-.-.-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 88888777778899999999888765332 22110 2234444555 456667777777777775433211101111
Q ss_pred HHHHH-HhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1738 VLPAI-LDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1738 ii~~l-l~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
.++.. .....-.+.+++..++.+.-..+..+.
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 12211 122223345677777777666555443
No 208
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.31 E-value=34 Score=46.51 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=68.7
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--ccHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHHHh-ch--hh
Q 000049 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFYKN-SK--LY 2146 (2629)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~~~~l--l~~Ll~~l~d~~~~vR~~a~~~L~~l~~~-~~--~~ 2146 (2629)
.-+|..+.++...++.++..+...+..++..-.+ ..+..+ ++.|+..+.+.+..++..||.++.++.-. .. ..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3456666677777777877777777666532111 112333 67788888999999999999999998533 22 11
Q ss_pred hh-hhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000049 2147 LV-DEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2147 ~~-~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
+. .+. .=++.++.++. -.|.+|++.....|..+...
T Consensus 313 lai~~~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKEL-NGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhc-CChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 11 111 12344555554 36778998888888887544
No 209
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.27 E-value=3.4 Score=46.00 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhhccCChhh
Q 000049 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
+.|++..++|.++.-.. |.--.+|++|.+++..+.+..... .+..++..+..+|.+ +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 44677888888886432 234589999999999998854433 457789999999988 8899
Q ss_pred hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc----CC--------CHHHHHHHHHHHHHHhhhc
Q 000049 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2629)
|.-+...+..++..+|..+...+..+++.+...++ +. ..+...++++++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888774 21 2334455666666664444
No 210
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=89.07 E-value=76 Score=45.86 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--HHHHHHHHhhhcCCcchhhhhHHHHHHHHhccc
Q 000049 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2629)
Q Consensus 2515 ~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 2588 (2629)
..+|..|++.|++.+..+=-.++-+|..+.-++|.. .++| ...+|.+.+.+.-++--+-..+-.|+.-++..+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 457888899999999888888888888888877754 2233 346888888888887767777777777777776
No 211
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.61 E-value=1.6e+02 Score=43.48 Aligned_cols=94 Identities=20% Similarity=0.139 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHH-hccchhhhHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1901 RRQVAGRALGELVRK-LGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1901 ~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L-~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
....+..|.+..... .|....+.++..+.... .+..+.+|..+..-+...+=...-...+...++|--.+...+.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 344455555444433 34446778887777533 3457889988776665543221111234455677778888999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~~ 1994 (2629)
-+||+.|+.++..+.+
T Consensus 1583 i~vre~Aa~~Lsgl~~ 1598 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQ 1598 (1710)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987765
No 212
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.52 E-value=24 Score=49.04 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CchhhHhHHHHHHHHHhhCCccccC--ChhHHHHHHHHHh----hhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhH
Q 000049 2442 SWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLKS----SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2629)
Q Consensus 2442 ~~~~~~~~~~~l~~~l~~~p~~~~~--~~~~~~i~~~l~~----~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2629)
....+.++.+++..++...-..--. ....+.+++.+.+ .....+...+...+.|+|.+-. | ...
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~------~----~~i 479 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH------P----SSI 479 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC------h----hHH
Confidence 3345666778887776522111000 1122344444444 3344455566778888886422 1 223
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccCchhHH
Q 000049 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQ 2595 (2629)
Q Consensus 2516 ~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~ 2595 (2629)
..+.+++.+-...+..+|.+|+.+++.++..+|..+++.+ +|. |....+ ...||.| |+..+++-......++
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l---~~i-~~n~~e-~~EvRia---A~~~lm~t~P~~~~l~ 551 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVL---LPI-YLNRAE-PPEVRMA---AVLVLMETKPSVALLQ 551 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHH---HHH-HcCCCC-ChHHHHH---HHHHHHhcCCCHHHHH
Confidence 3444444444566789999999999999999999887643 333 433332 3347855 4566666644455555
Q ss_pred HHHHHh
Q 000049 2596 GAQKFI 2601 (2629)
Q Consensus 2596 ~~~~~l 2601 (2629)
.+...+
T Consensus 552 ~ia~~l 557 (574)
T smart00638 552 RIAELL 557 (574)
T ss_pred HHHHHH
Confidence 555443
No 213
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.45 E-value=7.7 Score=48.12 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=108.8
Q ss_pred HHHHHHh-hcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHcC-
Q 000049 2252 GLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ- 2323 (2629)
Q Consensus 2252 ~L~~l~~-~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~lp~L~~~~~k~L~- 2323 (2629)
.+.-++. ..+...+..+..-++++++.++.|. +.++|...+.+|..++.+++... + ...+-+.+.+..++.
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~ 177 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY 177 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc
Confidence 4444444 6666778888899999999999885 89999999999999999877544 1 234556677777776
Q ss_pred -------CCCHHHHHHHHHHHHHHHhc------cC---ChhHHHHH-HHHhhh-cC---CHHHHHHHHHHHHHHHhhcCC
Q 000049 2324 -------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2324 -------d~~~~vR~~Aa~aLg~l~~~------~~---~~~~ll~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
+.+..+=..|..|+-.+... .+ .++.++.+ ++..+. .. .+.++...++.+..++...|.
T Consensus 178 LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 178 LPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc
Confidence 44556666777787777443 12 24455544 555542 22 388999999999999999888
Q ss_pred CcChHHHHHHHHHHHHhhcCC
Q 000049 2383 SVSSAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~ 2403 (2629)
.. ..+.+.++..+.+.+.++
T Consensus 258 ~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 258 SS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred HH-HHHHHHHHHHHHHHhcCC
Confidence 65 678888888888877665
No 214
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.32 E-value=3.6 Score=42.53 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhcc-chHhhHHhHHHHHHhh
Q 000049 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1669 ~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii~~ll~~ 1745 (2629)
..+...|..+..+++++++ ++.+......|.++..++. ..+++|..++.++..+...++. ++.|++++++-.+++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4456677888888999888 7777777788888777665 3568999999999999988874 6777777777777665
Q ss_pred c
Q 000049 1746 L 1746 (2629)
Q Consensus 1746 L 1746 (2629)
+
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 4
No 215
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.21 E-value=10 Score=44.51 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
..-+++.....|.++.+...|.+|..+|.. .-|...+.++ ++.++.+.+ ++-+|-..-...++.+..+.....-+
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 344566666666665566788888777642 2233333222 233333333 22222222223344444444333335
Q ss_pred chhHHHHHHHHHHHHc-----C-CCCH----HHHHHHHHHHHHHHHhhcHHh--H-HhhHHHHHhhh-cc-CChhhhHHH
Q 000049 1414 FEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGL-ED-KAWRTKQSS 1478 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l-----~-D~~~----~VR~aa~~al~~i~~~l~~~~--v-~~ilp~Ll~~L-~~-~~w~~r~~a 1478 (2629)
..||+.+++|.++.|+ + +++. .+|+-|...++.+++.++... . ..+.-.+++.+ +. +...+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 6899999999998875 2 3332 499999999999988876542 1 23333444433 22 345677788
Q ss_pred HHHHHHHHh
Q 000049 1479 VQLLGAMAY 1487 (2629)
Q Consensus 1479 ~~~L~~la~ 1487 (2629)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888877654
No 216
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.05 E-value=2.5 Score=42.25 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccch
Q 000049 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2629)
Q Consensus 2113 ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2629)
.+...+..+.|+.+.+|..++..|..+++... ......+.++..++..+.|+|+-|--+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556667788899999999999999987654 23345678899999999999999999999999999998887666655
Q ss_pred HHH
Q 000049 2193 IKV 2195 (2629)
Q Consensus 2193 ~~~ 2195 (2629)
+..
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
No 217
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=88.04 E-value=1.1e+02 Score=40.89 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=118.5
Q ss_pred cchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchH----HHHHHHHHHh-----hcC-C----CHHHHHHHHHHH
Q 000049 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAP----TLVSRLLDQL-----MKS-D----KYGERRGAAFGL 1362 (2629)
Q Consensus 1297 ~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~----~ll~~ll~~L-----~~~-~----~~~~R~~Aa~~L 1362 (2629)
.++.+++.+.+.+++.+..++..+++.+.......+-... ++++-+.+.+ .+. + +.-+..++..-+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 3567788888888888899999999988877766554322 2222222221 110 0 122445555555
Q ss_pred HHHHhhhCcchhhhhcHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHhccCchhHHHH-HHHHHHH-HcCCCC
Q 000049 1363 AGVVKGFGISSLKKYGIAATLREGLADR-------NSAKRREGALLAFECLCEKLGRLFEPYVIQ-MLPLLLV-AFSDQV 1433 (2629)
Q Consensus 1363 ~~l~~~lg~~~l~~~~i~~~L~~~l~~~-------~~~~~R~~Al~al~~La~~~~~~~~~~v~~-ilp~ll~-~l~D~~ 1433 (2629)
+ +++..|.+.... -+.+.+.+.+.-+ +....|+++.+.+-.+..+..+.+.+-+.. +.-.+++ .+-||+
T Consensus 323 a-la~~~~id~~d~-~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 323 A-LAGAGLIDYSDC-LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred H-Hhhccccchhhh-hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 5 444444443321 1444444433221 234678888887777776644444444333 3334444 688999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh--hHHHHH-HHHHHHhhCchhhhhhccchHHH-Hhhhhc
Q 000049 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT--KQSSVQ-LLGAMAYCAPQQLSQCLPKIVPK-LTEVLT 1509 (2629)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~--r~~a~~-~L~~la~~~p~~l~~~L~~ivp~-L~~~L~ 1509 (2629)
-.||.+|..++......-.+.....-+-.++ +|.. |...|. .+.......| .+..|- +++.. +++-|.
T Consensus 401 l~vRr~a~Aal~E~iGR~~s~a~g~~lIslI------N~~sv~r~s~csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~ 472 (993)
T COG5234 401 LNVRRAATAALFEVIGRHASIADGLSLISLI------NYVSVTRISNCSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQ 472 (993)
T ss_pred hhhhhHHHHHHHHHhccCCCcccchhhhhhc------cceecchhhhcchHHHHHhcCcc-ccchHH-HHHHHHHHhhhh
Confidence 9999999888877655422211111111122 3321 112121 1112221222 222222 33333 555566
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 000049 1510 DTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
+-+++|+.....+|.++.+.
T Consensus 473 H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 473 HWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred ccchhhhhhccccHHHHhcC
Confidence 77888999888899888653
No 218
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=88.03 E-value=1.3e+02 Score=41.80 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=68.9
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhh-hhccC-CchHHHHHH--------HHHHhh-cCCCCCC
Q 000049 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2629)
Q Consensus 1062 ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~~a--------~~~w~~-~~~~~~~ 1130 (2629)
.++..+|+|+..|+.||++|++... ...|...+. ++..+ .+-..|-.| .++|++ ++...+.
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~--------q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEK--------QHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhc--------cccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 5688899999999999999987642 122333332 12222 233333332 367986 3322222
Q ss_pred C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000049 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2629)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~ 1175 (2629)
+ + ..++..+-+.++...-..|.|++-++. .+|+.|++++..|.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 2 3 677787777777777788889988876 6788888888777765
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.22 E-value=4.2 Score=40.62 Aligned_cols=81 Identities=23% Similarity=0.264 Sum_probs=64.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHH
Q 000049 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2629)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ll 1777 (2629)
+...+..+.++.+.+|-.++..+..+...-. .-...++.++..++..+.|++++|--+|+.++..++..++...++.++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 3456667788899999999999998887654 123457889999999999999999999999999998888776544444
Q ss_pred HH
Q 000049 1778 PA 1779 (2629)
Q Consensus 1778 p~ 1779 (2629)
..
T Consensus 84 ~~ 85 (92)
T PF10363_consen 84 DE 85 (92)
T ss_pred HH
Confidence 43
No 220
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=1.5e+02 Score=43.87 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=58.5
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHH
Q 000049 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579 (2629)
Q Consensus 2514 l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~ 2579 (2629)
+.++....+....+++...|..|+..+..+..+-++.+.++++.++|.+-..+.|.+..|+..+-.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 677778888888899999999999999999999999999999999999999999888888766554
No 221
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.12 E-value=10 Score=49.02 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=102.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHH-hcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2229 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2229 ~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
-.+.-+.+.++.+++..|..|+.+|.. ..|-..+-||+..++..-++. +.. .+-......+..+..|+..-..++
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fIae~vs~ni~~-~nL~lL~~lm~m~rSLl~Np~i~l 282 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFIAEGVSVNIVQ-NNLELLIYLMRMVRSLLDNPNIFL 282 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHHhhheeecccc-ccHHHHHHHHHHHHHHhcCCccch
Confidence 345556677777888999988888765 445444555544332211111 001 134455566666777777667789
Q ss_pred cCchHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHh-ccCChh----HHHHHHHHhhhcC--CHHHHHHHH
Q 000049 2308 KPFLPQLQTTFIKCL----------QDSTRTVRSSAALALGKLSA-LSTRVD----PLVGDLLSSLQVS--DAGIREAIL 2370 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L----------~d~~~~vR~~Aa~aLg~l~~-~~~~~~----~ll~~Ll~~l~~~--d~~vr~~~l 2370 (2629)
.||+-+|++.++.|+ .|.++.+|.-|+..++.+.. +....+ .++..+...+.+. .....+.++
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 999999999999876 22357899999999998844 222112 2333444555443 367788888
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC
Q 000049 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~ 2403 (2629)
..|.++....-..+.-+.....+..+...+...
T Consensus 363 ~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 363 AGLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 888777654322222234445555555554443
No 222
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=1.2e+02 Score=39.93 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=99.0
Q ss_pred HHHHHHHhhccCccHHHHHHHHHHHHHHHhcC-----h---hhHhhhHHHHHHHHHHHhcCCC------------HHHHH
Q 000049 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERRQ 1903 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----~---~~l~~~l~~Ll~~L~~~L~~~~------------~~~R~ 1903 (2629)
.++..+..+......+|-+.....|..+.... . ..|++|+..++..+.....-+. .+.|.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHH
Confidence 34444455555666688889999998876521 1 3467888888888887765221 24577
Q ss_pred HHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC--cHH
Q 000049 1904 VAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILE 1980 (2629)
Q Consensus 1904 ~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~--d~~ 1980 (2629)
.....+.+++.-+|.. .+..+.-.+.+ ....++.-.++...+..++.+..++ -.+++|.+.+.++.- ...
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchh
Confidence 7888888887777764 33333333333 3457888889988888877665543 356777777776643 334
Q ss_pred HHHHHHHHHHHHHHHhCh
Q 000049 1981 VRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1981 VR~~A~~al~~l~~~~g~ 1998 (2629)
+|..+...+|.+.+.+..
T Consensus 444 ~~~ts~ll~g~~~ew~~~ 461 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQ 461 (559)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899898889988876653
No 223
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=86.39 E-value=1.3e+02 Score=40.16 Aligned_cols=170 Identities=19% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCC--------chhhHHHHHHHhccC---CChHHHHHHHHHHHHHHHhhChhHHHhHhH
Q 000049 1631 PIPEVRSVAARAIGSLIRGMGEEN--------FPDLVSWLLDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~~~~g~~~--------~~~ll~~Ll~~L~~~---~~~~~R~~a~~~L~~i~~~~g~~~l~~llp 1699 (2629)
.....|..-.+|++.+...+-+.. -..++....+.+.+. ....+|-.++.+++++...+|-...+.++.
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 445566666677777666544321 112333333333332 224578889999999988777542222221
Q ss_pred ------------HHHHhhc--CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCCh--------hHHHHH
Q 000049 1700 ------------DIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE--------SVRDAA 1757 (2629)
Q Consensus 1700 ------------~l~~~l~--~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~--------~VR~~a 1757 (2629)
.+...+. ..++-+-.+++..++ ++...+-++..-+ +.|.+.+++..+.. .+|+++
T Consensus 288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeeccc
Confidence 1111111 124444444444444 5544444332222 55666677765432 467766
Q ss_pred HHHHHHHHHHhhhchhhh----HHHHHh-hccCCCchHHHHHHHHHHHHHH
Q 000049 1758 LGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1758 l~al~~iv~~~~~~~i~~----llp~l~-~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
.-.++.+...++....+. +.--+. ..++|+.-.+|.++..++-+++
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 555555555555443333 222333 3789999999999887777765
No 224
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=86.35 E-value=11 Score=48.08 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=76.2
Q ss_pred ccchhhHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC---------CCCHhH
Q 000049 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQV 2288 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~-------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~---------~~~~~v 2288 (2629)
.|+.+++|-|.+-+.++ +...-.....++..++..-. =.+.||+-+++++++.++-. ...|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 34555555555444332 22333344555666665543 45789998888888865521 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Q 000049 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST--RTVRSSAALALGK 2339 (2629)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~--~~vR~~Aa~aLg~ 2339 (2629)
|..+..+|+.++++.+.......|.+..++.+.+.|+. ....--|..+|+.
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 99999999999999998877778999999999999973 3334444444443
No 225
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=90 Score=38.12 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhh----hcHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhccC
Q 000049 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK----YGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2629)
Q Consensus 1339 l~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~----~~i~~~L~~~l-~~~~~~~~R~~Al~al~~La~~~~~~ 1413 (2629)
++.++..+.++++.+.|..+-.|+..+-.--|.+..+. .+-.+.+...+ +...++.+-+.++.++..++-.-++.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 45567777776766778677777766665555544431 12333444333 44456777777777666666443321
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
-...+. . ..-+.+.+++ ...+ ....+++.+|+++.+|+-...++-
T Consensus 365 sa~~ie----~----------G~a~~avqAm----kahP-----------------~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKAIE----A----------GAADLAVQAM----KAHP-----------------VAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHh----c----------chHHHHHHHH----HhCc-----------------HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 100000 0 0001111111 1111 123456778888888877655555
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
...+..-+..|+..-...|+.++.+|-.||..++-.
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 555555667777777778999999999999888754
No 226
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.26 E-value=6.4 Score=40.74 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=65.3
Q ss_pred cHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000049 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~---~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2629)
+++..+.+.+.+ +++...|..++.+++.+.+..+..+.++.+++.-.+...+..+ .+|+.|..+...++..+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456666666665 5578888899999999999666656666666666666666655 89999999999999999988
Q ss_pred hHHhhHHHHHh
Q 000049 1455 GVKLVLPSLLK 1465 (2629)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2629)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 227
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=28 Score=51.05 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2629)
+..-+..+++.+...++.+|..|...+++++...... ++|....+..+...|.+..+|...-..+..++..++ ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3344666777788889999999999999999876544 344445555567778999999999998888887764 56
Q ss_pred HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000049 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2629)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2629)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999998888877665543
No 228
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.36 E-value=14 Score=45.84 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=96.6
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhc---c----CCCh
Q 000049 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2629)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~---------~~~ll~~Ll~~L~---~----~~~~ 1672 (2629)
+...+..+++-++|.++.+++|..+.+|..+..++..+...++... .+-+-+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 1222233333333 1 1222
Q ss_pred HHHHHHHHHHHHHHHhhC----hh---HHHhHhHH-HHHhhcC----CChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1673 VERSGAAQGLSEVLAALG----TV---YFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1673 ~~R~~a~~~L~~i~~~~g----~~---~l~~llp~-l~~~l~~----~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
..-..+..++-.++.... .. .+..++-. ++..+.. +.+.++...+..+..+...+|-....|+..+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 222344455555544321 11 22333333 5554432 258899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000049 1741 AILDGLADEN 1750 (2629)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2629)
.+.+.+.++.
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999887654
No 229
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.13 E-value=1.8e+02 Score=40.45 Aligned_cols=276 Identities=15% Similarity=0.116 Sum_probs=148.7
Q ss_pred cccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHh
Q 000049 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2629)
Q Consensus 2224 ~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2629)
|-++++.+|.+.+++.++ +.-.++...+..+++.+. ..+.||..++...+-.++.. ......+..++..+|.++..
T Consensus 544 P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 678889999999999754 344567777999998887 88999999887766665543 23566788899999988876
Q ss_pred cCC-CccCchHHHHHHHHH----HcCCC--CHHHHHHHHHHHHHHHhcc--------------CC----------hhHHH
Q 000049 2303 GGI-ALKPFLPQLQTTFIK----CLQDS--TRTVRSSAALALGKLSALS--------------TR----------VDPLV 2351 (2629)
Q Consensus 2303 ~~~-~l~p~lp~L~~~~~k----~L~d~--~~~vR~~Aa~aLg~l~~~~--------------~~----------~~~ll 2351 (2629)
... ..-.|+-+|...++. ++... +.+-+...+.-++.+..+. |- +-.+.
T Consensus 621 ~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 542 222244444444443 22221 4444555554455443220 10 11122
Q ss_pred HHHHHhhhc------CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHH-HHHHHhc--C
Q 000049 2352 GDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASI-LGIMSQC--M 2422 (2629)
Q Consensus 2352 ~~Ll~~l~~------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~-Lg~L~~~--~ 2422 (2629)
.+++..++. .+.++-+..+..+..=+...+..+..++.+.+..++........-.+-...+.| +...... .
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~ 780 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCK 780 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcccccc
Confidence 223322221 234455555544444444555556678899999998875433321111111111 1111110 0
Q ss_pred C--hhHHHHHHHHHH---h-hcCCCCchhhHhHHHHHHHHHhhCCccccC-C-hhHHHHHHHHHhhhcCCChhHHHhHHH
Q 000049 2423 E--DGQLADLLQELL---N-LASSPSWAARHGSVLVFATFLRHNPSAISM-S-PLFLSILDRLKSSLKDEKFPLREASTK 2494 (2629)
Q Consensus 2423 ~--~~~~~~~l~~ll---~-~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~-~-~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2629)
| ..++...+++.+ . ..-.++.+.....+..+..+++..|.-... . ++..-+..+....+++..+..-.++..
T Consensus 781 ~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 781 PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 1 112333333322 1 112444444444555777888888876542 2 233334447777788877665555555
Q ss_pred HhHHHHhh
Q 000049 2495 ALGRLLLH 2502 (2629)
Q Consensus 2495 alg~ll~~ 2502 (2629)
-+..++..
T Consensus 861 F~t~~~~~ 868 (982)
T KOG2022|consen 861 FLTALATY 868 (982)
T ss_pred HHHHHHhh
Confidence 44444433
No 230
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.06 E-value=1.5e+02 Score=39.71 Aligned_cols=262 Identities=16% Similarity=0.113 Sum_probs=127.1
Q ss_pred HhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHhh--cccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhh
Q 000049 2072 LGTILPALLSAM-GDDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2629)
Q Consensus 2072 l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~--~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~ 2148 (2629)
+..++..++... ...++..-+.....++.++.. +..+.+..++..|....+.. .....+-.++.++++.
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------ 245 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------ 245 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------
Confidence 344444444443 333344445667778887763 34577888888888775543 4555666677777742
Q ss_pred hhHHHHHHHHHHHhc--CC----ChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCC
Q 000049 2149 DEAPNMISTLIVLLS--DS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2629)
Q Consensus 2149 ~~~~~il~~Ll~ll~--d~----d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2629)
.+....+..|+..+. ++ +..+...|...++.++-..+++. +|.
T Consensus 246 ~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~-----------------------------~~~-- 294 (464)
T PF11864_consen 246 HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQG-----------------------------YPS-- 294 (464)
T ss_pred ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCC-----------------------------cce--
Confidence 223456677777773 22 22333344444444332222111 111
Q ss_pred CcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHH-hhcChhhhhhchhhhhHHHHHHhc---CCCC--------HhHHH
Q 000049 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRIIG---DRFP--------WQVKS 2290 (2629)
Q Consensus 2223 l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~-~~~~~~~l~p~v~~i~~~Li~~l~---~~~~--------~~vk~ 2290 (2629)
++-....++|.|...+..+++-+-......+..++ +..+..........+...+.++.. .... ..++.
T Consensus 295 l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (464)
T PF11864_consen 295 LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSS 374 (464)
T ss_pred ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 11122237788888887665555445555555555 333322222222333222222211 1101 12332
Q ss_pred H---HHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---cCChhHHHHHHHHhhh--cCC
Q 000049 2291 A---ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQ--VSD 2362 (2629)
Q Consensus 2291 ~---al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~---~~~~~~ll~~Ll~~l~--~~d 2362 (2629)
. .+..+..+.+. + .+..--..+...|.++...-+++...... ...--.+ ++.+-.-+..+++.+- +.+
T Consensus 375 ~~~~l~~~ie~L~~~-~-~~~g~~~~~~~f~~~~~~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~ 450 (464)
T PF11864_consen 375 NLHSLLSSIESLYEQ-H-DFNGPKDKLFNFFERVHSYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRR 450 (464)
T ss_pred HHHHHHHHHHHHHhC-C-CcCccHHHHHHHHHHHhccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCC
Confidence 2 22223333333 1 12212355667776665554333333222 2221112 3445566667777654 345
Q ss_pred HHHHHHHHHHHHHH
Q 000049 2363 AGIREAILTALKGV 2376 (2629)
Q Consensus 2363 ~~vr~~~l~AL~~v 2376 (2629)
.++|-.+++.+.++
T Consensus 451 ~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 451 SEVRIKALDVLEEI 464 (464)
T ss_pred chHHHHHHHHHhhC
Confidence 88998888877653
No 231
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.68 E-value=8.8 Score=47.98 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch---hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHH
Q 000049 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2629)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2629)
..++..+.+.+..+|..|...+.++........ +..+++.+.....|.+..+|.+....+..++-..+++.+.++..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 334556788999999999999999887744332 34556666677789999999999988888777777777889999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
-+++.+..++....+++|.-+...+..+...+++....
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 99999999999999999999999999998887764433
No 232
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=84.58 E-value=2.1e+02 Score=40.91 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
....+++.+...+..+++..-.....++..+..-..-. |. + ..+-+..-....|..-..++.....++.+++...|
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP 513 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45677888888888888888777777777664433211 10 0 11112222222223333555666777777777777
Q ss_pred hhhhhhHH--HHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000049 2549 SAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2629)
Q Consensus 2549 ~~v~~~l~--~l~p~l~~~~~~~~~~vk~aae~a~~~l~~ 2586 (2629)
+.+...+. ....++..++=.++..+..||..-+-.+++
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 76666554 455666667666777777777766666665
No 233
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=84.54 E-value=2.4e+02 Score=41.53 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=135.3
Q ss_pred HhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2141 ~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
++.+......+...++.++..+...++.|...+..++-.++...-. +..... +....... ... .|
T Consensus 795 ~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~----~~~~~s-~lF~~~~~----~~~------~g 859 (1364)
T KOG1823|consen 795 KSSDDSTVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLD----QIESVS-ELFKLLAR----KRH------SG 859 (1364)
T ss_pred cCccHhHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhcccc----HHHHHH-HHHHHHHH----Hhh------cC
Confidence 3444556666777778888888877888888888887777653211 100000 00000000 000 00
Q ss_pred CCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~ 2300 (2629)
+ | ..+-+.-.+...++..++..+| +.+-+...+..-+-++-.|-.++.-...++.++..++
T Consensus 860 -s-~---------------~~~~el~q~~~k~~t~lI~~~~--s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~ 920 (1364)
T KOG1823|consen 860 -S-P---------------STNFELCQDSFKGFTALIAQVG--SVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALV 920 (1364)
T ss_pred -C-C---------------cccHHHHHHHHHHHHHHHHHhc--ceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 0 0 0133455667788888888776 3444445555556666666545555556666666665
Q ss_pred HhcCCCccCchHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh
Q 000049 2301 RKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2629)
Q Consensus 2301 ~~~~~~l~p~lp~L~~~~~k~L~d-~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2629)
.+ + ...|-+..+++.+-+.+.. ...+.|..+...+-......++..+.+...++.+......-|+.....=+.
T Consensus 921 ~r-~-i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~~esg~esvr~~~al---- 994 (1364)
T KOG1823|consen 921 SR-K-IMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKLEKQMEFMVDNLLYEVESGRESVRFSPAL---- 994 (1364)
T ss_pred hc-c-ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhcccchhcccHHH----
Confidence 43 1 2233456677777765544 477788888777666644567778888888888765432222222200000
Q ss_pred cCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC
Q 000049 2380 AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 2439 (2629)
Q Consensus 2380 ~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~ 2439 (2629)
+.+.+..-.+.+....+.|....+|.++...+..+-.-...+.+.=+.+.+..|..
T Consensus 995 ----l~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~~~~~~~l~~~~~ 1050 (1364)
T KOG1823|consen 995 ----LFEILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELFNLLERLLHEWVG 1050 (1364)
T ss_pred ----HHHHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHHhHHHHHHHHHHh
Confidence 00111112223333345566777888777766655443333333333334445543
No 234
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=2.1 Score=47.86 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh---c
Q 000049 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2629)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2629)
....+|.|.+||...+-+-|-.|-.++.++..+.| +.+-|.+++++.||-+.+..+ +.++....|.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999988877788889999999998888 889999999999999988876 888999999999887764 5
Q ss_pred CCCccCchHHHHHHH
Q 000049 2304 GIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2304 ~~~l~p~lp~L~~~~ 2318 (2629)
|..+.||.-||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 678889988888765
No 235
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.93 E-value=2.6e+02 Score=41.47 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHH
Q 000049 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2629)
Q Consensus 2110 ~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~ 2175 (2629)
+.++...++....++++..|..|+..+..+....+..+...+++.++.|-++++|.+++|-..+..
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888665544
No 236
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.85 E-value=67 Score=41.41 Aligned_cols=183 Identities=15% Similarity=0.126 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhh
Q 000049 2403 DDDHVRVSAASILGIMSQCM--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS 2480 (2629)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~~--~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~ 2480 (2629)
.++.-|..|-+.+-++.... +.+--..+.+.+..-....+...+..++.+++.+...+|+-+...+....+...+.+
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d- 158 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID- 158 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh-
Confidence 35667778888887777662 211112344444443344555567788899999999999887766555555555544
Q ss_pred hcCCChhHHHhHHHHhHHHHhhhhhcC-CCCchhhHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---
Q 000049 2481 LKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI--- 2551 (2629)
Q Consensus 2481 ~~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~l~~~----l~~~~~-~vr~~al~~l~~~a~~~~~~v--- 2551 (2629)
....+.+..+.++=+++.+...+. .-..-++..++.++... .++++. +.-+.+..++.++-+.-|-.+
T Consensus 159 ---~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 159 ---GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred ---ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 333355566666666655543321 11113466677777765 333332 345567777777777655443
Q ss_pred hhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccC
Q 000049 2552 MVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590 (2629)
Q Consensus 2552 ~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~ 2590 (2629)
.+-. .-+..+...++-++..+|.+...-+..+|++..-
T Consensus 236 ~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 236 MNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred cCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 1111 3466677788888888999999999999999774
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.76 E-value=96 Score=37.34 Aligned_cols=130 Identities=15% Similarity=-0.001 Sum_probs=77.2
Q ss_pred hcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh
Q 000049 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2629)
Q Consensus 1308 ~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l 1387 (2629)
.-+..+++++....++|+.+...-. .....+-..+..|.+.+....+..+...+..+.+.- + ...++|+..+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~------r~f~~L~~~L 80 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-D------RHFPFLQPLL 80 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-c------hHHHHHHHHH
Confidence 4455677788888888887764432 333444455555555544344444445455554421 1 1112222221
Q ss_pred ------------cCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH
Q 000049 1388 ------------ADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-SDQVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1388 ------------~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l-~D~~~~VR~aa~~al~~i~~ 1449 (2629)
.++..|....+....+..++...++ +-.++++.+..++ ++.++.++..+.+++..+.+
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 1223566666656677777776664 5567788888888 78888899888888888873
No 238
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=69 Score=38.84 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCc----hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
.+.+++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+....++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 366789999999999999887766544 21 1224567777777776655 33344443321000001111222244
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444455555555556667777777765
No 239
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=82.26 E-value=1.3e+02 Score=39.75 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhcccccHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhh-hHHHHHHHHHHHhcCC
Q 000049 2090 VQSLAKEAAETVTLVIDEEGVESLVS-ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDS 2165 (2629)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~~~~ll~-~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~-~~~~il~~Ll~ll~d~ 2165 (2629)
-|-.+..+++.++..+..+....+.. .|+..+++.....|..++..+..++......... ..+.+...|...+.++
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 46678889999988887777777777 4888899998999999999999998865432211 1345556666666643
No 240
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=82.22 E-value=1.5e+02 Score=37.29 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=105.9
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccc
Q 000049 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2629)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~ 1815 (2629)
...+..-+..+.|++-.||..|++.+..+++. +.+..+.|.+.+.+. .. .++.++.++. .
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn------k~----sl~~Lf~~~~-------~ 119 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN------KA----SLTGLFGQIE-------V 119 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH------HH----HHHHHHhhhh-------h
Confidence 45677777888888899999999998887764 333334444433332 01 1122221110 0
Q ss_pred cCCCCCCcccHHHHHHHH--------HHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHH
Q 000049 1816 EGGSDDEGASTEAHGRAI--------IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2629)
Q Consensus 1816 ~~~~ede~~~~~~~~~~l--------~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll 1887 (2629)
+ |+...+.....+ .+++..+.-..++..+++.+.|...+--...+..++.+-...+..-..-+..|.
T Consensus 120 --~---D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa 194 (460)
T KOG2213|consen 120 --G---DEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELA 194 (460)
T ss_pred --h---hHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHH
Confidence 0 011111111111 122233333445666667777777776666777777665433222122233333
Q ss_pred HHHHHH-----hc--CCCHHHHHHHH--HHHHHHHHHhccc-hhhhHHHHHhhhcCCCC-hhHHHHHHHHHHHHHHhhch
Q 000049 1888 NTLISS-----LA--SSSSERRQVAG--RALGELVRKLGER-VLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGK 1956 (2629)
Q Consensus 1888 ~~L~~~-----L~--~~~~~~R~~A~--~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~-~~vR~~a~~aL~~li~~~~~ 1956 (2629)
...-.. +. |.+...|...+ .++.-+.+..+.. ++.++-.-+...-.+.. .+.+...+.+|+++...+..
T Consensus 195 ~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tta 274 (460)
T KOG2213|consen 195 EEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTA 274 (460)
T ss_pred HHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchH
Confidence 222111 11 22222333221 1111222222221 22222222221112222 34456778888887665544
Q ss_pred hhHHHhHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhC
Q 000049 1957 SQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+...+.++.|+..+...+- +.-++....-.+++-.+..+.|
T Consensus 275 q~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 275 QAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666655433 2223333333444444444444
No 241
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=81.03 E-value=1.7e+02 Score=40.33 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHHHHhcChhhHhhhHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--hhhhHHHH
Q 000049 1857 SLSVRQAALHVWKTIVANTPKTLKEIMP-------VLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPI 1927 (2629)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~-------~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~ 1927 (2629)
+..+-+++..++..+....+. ...++. ..++.|++++...+..+-..++.+|..+....... +-.+.+|-
T Consensus 532 n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~ 610 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPD 610 (717)
T ss_pred chHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHH
Confidence 445667777777776654332 122222 23567888888888888888888888776433211 22445555
Q ss_pred HhhhcCC------CChhHHHHHHHHHHHHHHh
Q 000049 1928 LSRGLKD------PSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1928 L~~~L~d------~~~~vR~~a~~aL~~li~~ 1953 (2629)
|.+.|.+ .+.++...+|..|.+++..
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 5555543 2367788899999988743
No 242
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.78 E-value=12 Score=38.50 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhcc-chHhhHHhHHHHHHhhc
Q 000049 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1671 ~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~-~f~p~l~~ii~~ll~~L 1746 (2629)
+..+|..+..+++.+++..| .......|.++..++. ..+++|..++.++..+...+.+ +..|.++.++..++++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888555 5566667777766654 3677999999999999888874 45566666666665543
No 243
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.62 E-value=50 Score=47.45 Aligned_cols=214 Identities=16% Similarity=0.144 Sum_probs=117.8
Q ss_pred CcHHHHHHHHHhhhhhHhhhccch---HHHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHhh----hCcchhhhhcHHH
Q 000049 1312 PSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGIAA 1381 (2629)
Q Consensus 1312 ~~~~Vq~~~~~~L~~l~~~~~~~~---~~ll~~ll~~L~~~~---~~~~R~~Aa~~L~~l~~~----lg~~~l~~~~i~~ 1381 (2629)
+--+|+....+|+-.++...++.. -..+-+++..+.+.. +...-+.+..||..+... ++.+.+. .+++
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~lid 931 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DLID 931 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HHHH
Confidence 344566666677777666655432 122233333444332 234455566667666543 2223332 5666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc---------------------------hhHHHHHHHHHHHHcCCCCH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLF---------------------------EPYVIQMLPLLLVAFSDQVV 1434 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~---------------------------~~~v~~ilp~ll~~l~D~~~ 1434 (2629)
.+....+.+.|-+.--.|+-.|-.+++.+.+.+ +..+.-++..+..+..|..+
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence 666665444454444445554544444332211 11233456667778899999
Q ss_pred HHHHHHHHHHHHHHHh----hcHHhH-----HhhHHHHHhhhc---cCChhhhH-------HHHHHHHHHHhhCchhhhh
Q 000049 1435 AVREAAECAARAMMSQ----LSAQGV-----KLVLPSLLKGLE---DKAWRTKQ-------SSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1435 ~VR~aa~~al~~i~~~----l~~~~v-----~~ilp~Ll~~L~---~~~w~~r~-------~a~~~L~~la~~~p~~l~~ 1495 (2629)
.||..|++.+-+++.. +++..+ ..++| ++.+-. -++|+.+. ..+..++.++...++++..
T Consensus 1012 eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~p-LLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ 1090 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMP-LLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKL 1090 (1610)
T ss_pred HHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHH-HhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999888777653 344323 23333 332111 14565443 3677778888766666533
Q ss_pred h--c-------cchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1496 C--L-------PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1496 ~--L-------~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
. + ..++..+.....|.++++..+|.+++..+..
T Consensus 1091 llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1091 LLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 2 2 2233344445568899999999999887654
No 244
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=1.3e+02 Score=44.45 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=86.0
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHH----HHHHhhcCCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV----SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll----~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
++.-+..+++.+...|+..+..+...+..++...+.+....++ ..+.+...|.+..+|..+...+..+....+..+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777788888988888888887765543333333 334455678999999999999999999989999
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~ 2182 (2629)
++|+..+++..+....|.+..|-.+|...+.....
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 99999999999988889998888887777766554
No 245
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.17 E-value=17 Score=37.51 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=63.3
Q ss_pred cHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000049 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~---~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2629)
+++..+.+.+.|.+ +...|..++.+++.+.+..|.....+.+++.-.+...+..+ ..|..|..+...+...+.+.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCCHH
Confidence 45666666665543 66778899999999999877666666666666666677644 69999999999999999887
Q ss_pred hHHhhHHHHH
Q 000049 1455 GVKLVLPSLL 1464 (2629)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2629)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 246
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=80.12 E-value=12 Score=41.37 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHh
Q 000049 1144 YNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222 (2629)
Q Consensus 1144 ~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~ 1222 (2629)
..+|++.+.+++.++ ..||+.|++.+..+.+.... +-.........|..+.+.+.+- -
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-----------~~~~~~~~L~iL~~l~eEi~~~--------~-- 60 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-----------SPQHLELVLRILRILPEEITDF--------R-- 60 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-----------THHHHHHHHHHHHHHHHHHHTS--------H--
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-----------chhHHHHHHHHHHHHHHHHHhh--------h--
Confidence 468999999999986 47899999988888876531 1134556666666666544320 0
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhH
Q 000049 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2629)
Q Consensus 1223 ~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~ 1302 (2629)
+ .+.....|....++.... .+.++..+.+.+...... ....+...++.+++...+..+...-.-..++
T Consensus 61 ~--~~~~~~r~~~l~~~l~~~--------~~~i~~~l~~~l~~~~~~--~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l 128 (148)
T PF08389_consen 61 R--SSLSQERRRELKDALRSN--------SPDILEILSQILSQSSSE--ANEELVKAALKCLKSWISWIPIELIINSNLL 128 (148)
T ss_dssp C--CHSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHC--CHHHHHHHHHHHHHHHTTTS-HHHHHSSSHH
T ss_pred c--hhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHHHHhCCHHHhccHHHH
Confidence 0 011222233333332221 344566666666542111 1134455555555555443322111112366
Q ss_pred HHHHhhcCCCcHHHHHHHHHhh
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCL 1324 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L 1324 (2629)
+.+.+.+.++ +.+..+++||
T Consensus 129 ~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 129 NLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHHhC
Confidence 6666676444 3466666664
No 247
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=1.6e+02 Score=36.06 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHH
Q 000049 2529 SSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584 (2629)
Q Consensus 2529 ~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l 2584 (2629)
...|.|.+..+|+.++.+..+--.+.++.=+..|...-+..+..++.++-.|+-.|
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 45788999999999998877666667777788888887777777888888877665
No 248
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.07 E-value=2.9 Score=34.67 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.6
Q ss_pred cchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.+.+|.|..++.+.+++|++.|+++|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999986
No 249
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.51 E-value=1.8e+02 Score=36.85 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHHHHhchhh---hhhhH----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000049 2123 DNQASIRRSSAYLIGYFYKNSKLY---LVDEA----PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2629)
Q Consensus 2123 d~~~~vR~~a~~~L~~l~~~~~~~---~~~~~----~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2629)
..+..+.+..+..++.++...+.- +..+. ...+..++.+++.+|..+...|...+..++...+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 445677777777777776654311 11110 12567788888888999999999999998766544
No 250
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.27 E-value=2.1e+02 Score=36.61 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhhccCChhh
Q 000049 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1398 ~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
.|+..+..+++...-...-.-..++..+.+++.-.+...--....-++.+.-..... .-..++..++..+.......
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 455666666664432122223467777777776555443333333332221111111 12456777777777778888
Q ss_pred hHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC
Q 000049 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~ 1511 (2629)
+...+.++..+.+...-.-...-.+++|.+..++.+.
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 8899999998887543322222357888888888764
No 251
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=77.90 E-value=18 Score=41.98 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000049 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2629)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~ 1660 (2629)
.-.....+++.+...++. ...|++..++..+-+.-.+++...|..+-.++|+.++++|++.+-.++|
T Consensus 16 aw~~vl~v~s~lf~~lg~--~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGE--RSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 334455555555555554 2346677777777777777778899999999999999999875555555
No 252
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.64 E-value=32 Score=43.31 Aligned_cols=122 Identities=14% Similarity=0.156 Sum_probs=93.8
Q ss_pred HhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHH
Q 000049 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSII 1925 (2629)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~ll 1925 (2629)
.......+..||+.|+..++.+..+.|..+..++-.+++.+.....|.+..+|....+.+..++...... +.+.+.
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 3345778899999999999999998888888788888888888899999999999999998877655433 345667
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHH
Q 000049 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2629)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2629)
+.+..++..-.+++|..+...+.-++..+++........ +++.+..
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d 189 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKD 189 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHH
Confidence 777778888889999999999988888776543332222 4444443
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.20 E-value=2e+02 Score=35.26 Aligned_cols=184 Identities=18% Similarity=0.176 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhh--------hhhhHHHHHHHHHHHhcCCC-----hhHHHHHH
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY--------LVDEAPNMISTLIVLLSDSD-----STTVAAAW 2174 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~--------~~~~~~~il~~Ll~ll~d~d-----~~V~~~a~ 2174 (2629)
..+..+-+.+++++.+.. .-..++..+..+....... +.-.+-..++.++..+++++ +.++ ...
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIA 136 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHH
Confidence 346777888888887743 3445666666665433211 22223455677777788776 3444 455
Q ss_pred HHHHHHHhhcCcccccchHHHHH-HHHhhhhhhhhhhhc-CCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 000049 2175 EALSRVVASVPKEVQPSYIKVIR-DAISTSRDKERRKKK-GGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 2252 (2629)
Q Consensus 2175 ~aL~~l~~~~~~~~l~~l~~~l~-~~l~~~~~~~~~~~~-~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~ 2252 (2629)
+++..++...+...+..++.... ... ++. .++. +....+.....|+.-..++-.++..+.++.+-.|......
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~f---r~~--~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRF---RDK--DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCC---CCH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 78888876655443333322211 000 000 0000 0001122222356666677778888889999999999999
Q ss_pred HHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000049 2253 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2629)
Q Consensus 2253 L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2629)
|..+.....-. +|+..+++.|+.|.+... .-..|++.|..+....|.
T Consensus 212 L~~ll~~~d~~--~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 212 LKVLLPHVDMR--SPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHhccccCC--CCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhccc
Confidence 99999887532 678889999999999753 445677777777665554
No 254
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.45 E-value=2.4e+02 Score=35.88 Aligned_cols=216 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----------hhhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----------PDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-----------~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
|-..++..+...+..-+.+.|..+...++.+.+.-..... ++++..|+.+-.+.+ .+...|.
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d-------ial~~g~ 145 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD-------IALNCGD 145 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT-------THHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc-------ccchHHH
Q ss_pred HHHhhChhHH-------HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHH
Q 000049 1685 VLAALGTVYF-------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757 (2629)
Q Consensus 1685 i~~~~g~~~l-------~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~a 1757 (2629)
+++.+-.... .+.+-.+.+....++-++-..++..|..+-.....-...|+..
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~-------------------- 205 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSN-------------------- 205 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHH--------------------
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHH--------------------
Q ss_pred HHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHh
Q 000049 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837 (2629)
Q Consensus 1758 l~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~L 1837 (2629)
..+.+...+...+.++|+-+|+.+++++|+++ ...........++
T Consensus 206 --------------n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell---------------------ldr~n~~vm~~yi 250 (335)
T PF08569_consen 206 --------------NYDRFFQKYNKLLESSNYVTKRQSLKLLGELL---------------------LDRSNFNVMTRYI 250 (335)
T ss_dssp --------------THHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH---------------------HSGGGHHHHHHHT
T ss_pred --------------HHHHHHHHHHHHccCCCeEeehhhHHHHHHHH---------------------HchhHHHHHHHHH
Q ss_pred chhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh--cChhhHhhhHHHHHHHHHHHhcC
Q 000049 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA--NTPKTLKEIMPVLMNTLISSLAS 1896 (2629)
Q Consensus 1838 g~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~--~~~~~l~~~l~~Ll~~L~~~L~~ 1896 (2629)
+. .+.+..+...+.|.+..+|-.|.++++.++. +-|..+..++-.=-..++..+.+
T Consensus 251 ~~---~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~ 308 (335)
T PF08569_consen 251 SS---PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD 308 (335)
T ss_dssp T----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred CC---HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
No 255
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=75.37 E-value=4.6e+02 Score=40.20 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2345 ~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
..+..++.-.-..++++++.++.-....+..+.... ..-+.+.|+..|..++-+.++....+|...|..|+...+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 334444333333446667777777666666666554 1224566666665555444554446777777777766553
Q ss_pred hHHH---HHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHh
Q 000049 2425 GQLA---DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2629)
Q Consensus 2425 ~~~~---~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2629)
.+. .++..++..+..-+....+..+..++.+....+.. .....+++.-.+.+.+.+.++.++.-++.+.-.++.
T Consensus 507 -~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~--~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 507 -ELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSS--SSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp -HHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCccc--chhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 332 23333333222222222222333333332221211 234567888889999999999888877776666555
Q ss_pred hhh
Q 000049 2502 HQI 2504 (2629)
Q Consensus 2502 ~~~ 2504 (2629)
+-+
T Consensus 584 ~la 586 (1426)
T PF14631_consen 584 HLA 586 (1426)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 256
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=74.87 E-value=55 Score=45.20 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-
Q 000049 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER- 1919 (2629)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~- 1919 (2629)
+..+++..+|....|....-|. +.=|...+...|..+..+-..|.....+-+.......-..|..++..++..+.+.
T Consensus 14 RyKkLV~~iFPr~~e~gpn~s~--m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~ 91 (819)
T KOG1877|consen 14 RYKKLVDNIFPRSPEDGPNKSK--MEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI 91 (819)
T ss_pred HHHHHHHHhCCCCCCCCccccc--HHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh
Confidence 3345566666543333222222 2223334444565555544445444444454444444567888999999888776
Q ss_pred --hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchh-hHHHhHHHHHHHHHHHhcC-Cc----HHHHHHHHHHHHH
Q 000049 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCD-SI----LEVRESAGLAFST 1991 (2629)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~d-~d----~~VR~~A~~al~~ 1991 (2629)
+...++..+...|.+..++.+..+|..+...+...... ...-.++.+++.+...... .+ ..+|.+..+++..
T Consensus 92 n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa 171 (819)
T KOG1877|consen 92 NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSA 171 (819)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHH
Confidence 45677777888888888999999999888776433221 1211234455555543322 22 2355555555544
Q ss_pred HHHH---------hCh-hhhhhhHHHHHHhccCc
Q 000049 1992 LFKS---------AGM-QAIDEIVPTLLHALEDD 2015 (2629)
Q Consensus 1992 l~~~---------~g~-~~~~~ilp~Ll~~L~~~ 2015 (2629)
+... ++. ...+.++|.++..+...
T Consensus 172 ~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~ 205 (819)
T KOG1877|consen 172 VVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSI 205 (819)
T ss_pred HHHHHHhhhhhhhhhhhhhhccchhhHHHhhcch
Confidence 4322 222 22566778777666443
No 257
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.75 E-value=71 Score=37.76 Aligned_cols=145 Identities=18% Similarity=0.206 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcC-CCCchhhHhH-HHHHHHHHhhCCccccCC
Q 000049 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS-SPSWAARHGS-VLVFATFLRHNPSAISMS 2467 (2629)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~-~~~l~~~l~~~p~~~~~~ 2467 (2629)
+....++..+..+...+.|..+..+++......+.. .++.+..++. -++|...... ...+..++...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 455666777778888888888877777655444432 2333334333 3455433322 22222222221
Q ss_pred hhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000049 2468 PLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2629)
Q Consensus 2468 ~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~ 2547 (2629)
+.+.+.+.+-+.|+++..|..|..++-.+... .....++..+...+.|++.-||.+...+|+.++.++
T Consensus 119 ---~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ---GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 24677788889999999999988776554433 245667777777789999999999999999999999
Q ss_pred chhhhhhHHH
Q 000049 2548 PSAIMVHVAL 2557 (2629)
Q Consensus 2548 ~~~v~~~l~~ 2557 (2629)
|+.+.+++..
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888866
No 258
>PF05536 Neurochondrin: Neurochondrin
Probab=73.65 E-value=3.5e+02 Score=37.01 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhh
Q 000049 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDS-TTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204 (2629)
Q Consensus 2126 ~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~-~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~ 2204 (2629)
...+..|+..+..|+......-.+.+-..++.++..+...+. .+...+.++|..+.. .++.. +.+-.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~---------~aLl~-- 138 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGA---------KALLE-- 138 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhH---------HHHHh--
Confidence 455667888888888743333356667778888888876666 888889999988873 22210 00000
Q ss_pred hhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhc---hhhhhHHHHHHhc
Q 000049 2205 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF---VIPITGPLIRIIG 2281 (2629)
Q Consensus 2205 ~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~---v~~i~~~Li~~l~ 2281 (2629)
.. .+|.+.+.+.+ .+...+.|...+..++...+......+ +..+.+.+-+.+.
T Consensus 139 -------------------~g----~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs 194 (543)
T PF05536_consen 139 -------------------SG----AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFS 194 (543)
T ss_pred -------------------cC----CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH
Confidence 01 12333333333 445567777777777766653333322 2233333444433
Q ss_pred CCCCHhHHHHHHHHHHHHHHhcCCC------ccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Q 000049 2282 DRFPWQVKSAILSTLSIIIRKGGIA------LKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2282 ~~~~~~vk~~al~~L~~L~~~~~~~------l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~ 2342 (2629)
. .....|..++..|+.++...+.. -..+.+++...+...+++. .+.-|..|....+.+..
T Consensus 195 ~-~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 195 S-FHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred h-hccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 35567888999999998877421 1225667777777778775 88889988888887754
No 259
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=73.65 E-value=2.6e+02 Score=35.53 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCcc--ccCChhHHHHHHHHHh-hhcCCChhHHHhHHHHhHHHHhh
Q 000049 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSA--ISMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLH 2502 (2629)
Q Consensus 2430 ~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~--~~~~~~~~~i~~~l~~-~~~~~~~~ir~~a~~alg~ll~~ 2502 (2629)
+++.+..|+.+++........+++..+.+....- +++.++.+.+++++.+ +-.++++...-++..|+..+..-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 5666667777777665555566666665543322 2345566777777776 55667777777777787776544
No 260
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=72.92 E-value=76 Score=40.14 Aligned_cols=137 Identities=18% Similarity=0.295 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH-HhcCC--CCHhHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR-IIGDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2244 ~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~-~l~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.+|...+..+...++..+. .......+++||+. +++|- ..++.| ..+|.+++.++.+++..+.+.+|++...+.
T Consensus 42 ~iKkeIL~Li~t~i~~~~~--~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAED--PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S---HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4566777888888877652 22334556666665 34331 133333 468889999999999999999999877766
Q ss_pred HH----cCCC---CHHHHHHHHHHHHHHHhcc---------CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCC
Q 000049 2320 KC----LQDS---TRTVRSSAALALGKLSALS---------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2629)
Q Consensus 2320 k~----L~d~---~~~vR~~Aa~aLg~l~~~~---------~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2629)
.+ ..+. .++.|..-.+-|..+.... ..+..++..++.+++.++.++.+..+.++.+++.....
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 54 3332 5899988888888875432 23556777888889989999999999999999987655
No 261
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=72.46 E-value=56 Score=37.80 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCch
Q 000049 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549 (2629)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~ 2549 (2629)
....++.+.+.+.+.+..+|..|+..++..+..+. .++.+.+|.++....|++..+|..|...+..+..++++
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL-------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 44566667777888999999999999998887654 34578999999999999999999999999999999998
Q ss_pred hhhhhH
Q 000049 2550 AIMVHV 2555 (2629)
Q Consensus 2550 ~v~~~l 2555 (2629)
.+...+
T Consensus 79 ~v~~~~ 84 (187)
T PF12830_consen 79 LVESRY 84 (187)
T ss_pred HHHHHH
Confidence 875433
No 262
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.00 E-value=14 Score=38.70 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1936 SASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1936 ~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
++.+..-+|.-||+++..++.. ...+ -..-..++..+.++|++||..|..|+..+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5556666777777776655321 1111 2244567788999999999999999887653
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.43 E-value=69 Score=35.19 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2629)
..+....+..|.+.+.+.++.+...|+.++..+.++.|..+-..+ ..++..|..++.+ .+..|++.....+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999887654332 5677888888887 7889999988888888766
Q ss_pred cCcccccchHHHHHHHH
Q 000049 2184 VPKEVQPSYIKVIRDAI 2200 (2629)
Q Consensus 2184 ~~~~~l~~l~~~l~~~l 2200 (2629)
...+.-...+..+.+.+
T Consensus 112 f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 112 FKNDPSLSLMSDLYKKL 128 (144)
T ss_pred hCCCcccHHHHHHHHHH
Confidence 65432222333333333
No 264
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.28 E-value=3.7e+02 Score=36.22 Aligned_cols=104 Identities=21% Similarity=0.319 Sum_probs=80.9
Q ss_pred hhHHHHHHHHh-cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000049 2229 PLLPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2629)
Q Consensus 2229 ~ilp~ll~~L~-~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2629)
.-+|.++..+. .+.|..|..|..++|++.- .+-.+++..+..|.|-++|. +..||..++.++.-++-+....+
T Consensus 933 ehlpllIt~mek~p~P~IR~NaVvglgD~~v-----cfN~~~de~t~yLyrrL~De-~~~V~rtclmti~fLilagq~KV 1006 (1128)
T COG5098 933 EHLPLLITSMEKHPIPRIRANAVVGLGDFLV-----CFNTTADEHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQLKV 1006 (1128)
T ss_pred HHHHHHHHHHhhCCCcceeccceeeccccce-----ehhhhhHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccceee
Confidence 34566666666 5678889999999998873 35567788889999999985 88999999999998887766666
Q ss_pred cCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 000049 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~ 2342 (2629)
+.+++ .+.++|.|++..+...|..-+-.++.
T Consensus 1007 KGqlg----~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 1007 KGQLG----KMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred ccchh----hhHhhccCCcchHHHHHHHHHHHHHh
Confidence 66655 45678999998888888777666644
No 265
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=70.21 E-value=3e+02 Score=34.75 Aligned_cols=268 Identities=14% Similarity=0.102 Sum_probs=127.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHH
Q 000049 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2629)
Q Consensus 2116 ~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~ 2195 (2629)
.+++..+. ....++.|...++.++++.+ ......+..-+.+++|.|-.||..|..-|-.+++. +.++.+.+.
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~ 100 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDV 100 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHH
Confidence 34444433 34566778889999988754 22345566667788899999999888877777654 556666666
Q ss_pred HHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhh-hhH
Q 000049 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-ITG 2274 (2629)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~ 2274 (2629)
+.+.+....-. .+......++..+|+-+..-|..=+--.+++.+..-+.. |+.
T Consensus 101 l~qLLnk~sl~--------------------------~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~ 154 (460)
T KOG2213|consen 101 LVQLLNKASLT--------------------------GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVD 154 (460)
T ss_pred HHHHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHH
Confidence 66666532111 011111113445555554444433323332333222211 111
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHH------HHHHH--cCCCCHHHHHHHHHHHHHHHhc---
Q 000049 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT------TFIKC--LQDSTRTVRSSAALALGKLSAL--- 2343 (2629)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~------~~~k~--L~d~~~~vR~~Aa~aLg~l~~~--- 2343 (2629)
..-..+.|- ..+--..-+..|+.+-.- ....+ -.++++ ..... +.-++.+.-.+...|+..-+-+
T Consensus 155 eikkal~dV-tgeef~lfm~~L~~lk~~--~~k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFar 230 (460)
T KOG2213|consen 155 EIKKALEDV-TGEEFTLFMDILASLKSL--QTKAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFAR 230 (460)
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhhhcc--cCCCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhc
Confidence 122222221 111111222222221110 00000 011111 11111 2222444555555554432111
Q ss_pred cCChhHHHHHHHHhh--hcCC---HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q 000049 2344 STRVDPLVGDLLSSL--QVSD---AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILG 2416 (2629)
Q Consensus 2344 ~~~~~~ll~~Ll~~l--~~~d---~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg 2416 (2629)
...-..++..+...+ ...+ .+.+-..+++|.++.............++|+++|...+--+ .+.......+|+-
T Consensus 231 gapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvECll 310 (460)
T KOG2213|consen 231 GAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLL 310 (460)
T ss_pred CCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHH
Confidence 111234444444432 1122 56777889999998865432222466788888887765543 4556666777776
Q ss_pred HHHhc
Q 000049 2417 IMSQC 2421 (2629)
Q Consensus 2417 ~L~~~ 2421 (2629)
.+...
T Consensus 311 y~~h~ 315 (460)
T KOG2213|consen 311 YALHH 315 (460)
T ss_pred HHHHH
Confidence 55443
No 266
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=68.64 E-value=97 Score=36.11 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHh
Q 000049 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465 (2629)
Q Consensus 1396 R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~ 1465 (2629)
-...+..++.+.+.+|....|++..++..+-..-.+++...|+.+..+++..+..++++.+=.++|.-++
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 3456777777888888777888888888888888888888999999999999999999988777774433
No 267
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.50 E-value=1.2e+02 Score=38.27 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCc---ccchH----hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch---h
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKD---MIPYI----GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP---D 1657 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~---l~~~l----~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~---~ 1657 (2629)
.+.++.+.....++.++.. ++.- +..+. +.....+.+.+..+++.++..|+..++.++...+..... +
T Consensus 69 ~~~d~v~yvL~li~dll~~--~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSD--DPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp --HHHHHHHHHHHHHHHH---SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhc--CHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 3457777777777777763 2211 11111 113445556888889999999999999999876655444 7
Q ss_pred hHHHHHHHhccCCCh---HHHHHHHHHHHHHHHhhChh--HH-HhHhHHHHHhh
Q 000049 1658 LVSWLLDALKSDNSN---VERSGAAQGLSEVLAALGTV--YF-EHILPDIIRNC 1705 (2629)
Q Consensus 1658 ll~~Ll~~L~~~~~~---~~R~~a~~~L~~i~~~~g~~--~l-~~llp~l~~~l 1705 (2629)
.++.+++.+.+.... .....+++++..++..-... ++ ...++.+...+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence 788888877764322 12345677787776532221 12 34455555544
No 268
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=67.96 E-value=2.9e+02 Score=33.77 Aligned_cols=169 Identities=18% Similarity=0.217 Sum_probs=95.9
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC----C--cccchHhhhHHHHHHHhcCCC-----HHHHHHHHH
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP----K--DMIPYIGLLLPEVKKVLVDPI-----PEVRSVAAR 1641 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~----~--~l~~~l~~ll~~L~~~L~d~~-----~~VR~~A~~ 1641 (2629)
....+.+.+.+|+...+ .-..+.+.+..+.....++ . -+.-.+-..+|.+...+.++. +.++ .++.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 44567888888887663 3344666666666542221 1 111123346677777777766 3444 5557
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHH-HHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHH
Q 000049 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG-AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2629)
Q Consensus 1642 aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~-a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l 1720 (2629)
.|+.+++..|...+..++..+.+. . ...+.. ..+.+..+...+.+++--+++-.++..+.++.+.+|...+.++
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~---~--fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKG---R--FRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhc---C--CCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 777777665554444444433221 1 101111 1222333444444444445555667777777788888888888
Q ss_pred HHhhhhhccchHhhHHhHHHHHHhhcCCCC
Q 000049 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
..+.....-. .|+..+++.++++.+..+.
T Consensus 213 ~~ll~~~d~~-~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 213 KVLLPHVDMR-SPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHhccccCC-CCcchHHHHHHHHHhCCcc
Confidence 8777665433 3466677888888876543
No 269
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=67.59 E-value=66 Score=37.92 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhH-HHHHHHHHhhCCccccCCh
Q 000049 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSP 2468 (2629)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~ 2468 (2629)
+....++..+.+++.-+.|-.+...+...-...+++.+. .+..++.. -+.|+..... ...+..++.+.|
T Consensus 45 ~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~-~~~~~l~~--~~~Wd~vD~~~~~i~g~~~~~~~------- 114 (208)
T cd07064 45 EELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPEDLP-LLEELITT--KSWWDTVDSLAKVVGGILLADYP------- 114 (208)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHcC--CchHHHHHHHHHHHhHHHHhCCh-------
Confidence 344555555666665567777776666655555554422 23333322 3455543321 112222232222
Q ss_pred hHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000049 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2629)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~ 2548 (2629)
...+.+..-..+++...|..|+.+.-..... .....+.......++|+..=|+.+.-.+|+.+++++|
T Consensus 115 ---~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 115 ---EFEPVMDEWSTDENFWLRRTAILHQLKYKEK---------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred ---hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 2345667778899999999988753222111 1223334444456779999999999999999999999
Q ss_pred hhhhhhHHHH
Q 000049 2549 SAIMVHVALF 2558 (2629)
Q Consensus 2549 ~~v~~~l~~l 2558 (2629)
+.|.+++..-
T Consensus 183 ~~V~~fl~~~ 192 (208)
T cd07064 183 DWVRDFVAAH 192 (208)
T ss_pred HHHHHHHHHh
Confidence 9998888553
No 270
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.03 E-value=4.4e+02 Score=35.52 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC
Q 000049 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS 2361 (2629)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~-d~~~~vR~~Aa~aLg~l-~~~~~~~~~ll~~Ll~~l~~~ 2361 (2629)
.++....+|-.+|..+.--...+...++|-+++ .+. .|++.+|..|.-+||.+ +.+..-+|..-..|...+.+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt----~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De 983 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLIT----SMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDE 983 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcch
Confidence 356788888888887655433444445555444 444 47999999999999999 445566677777788888888
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
+..||.+.+-.+..++-+..-++ ..+. ..+...+.|++.+...+|--.+..++
T Consensus 984 ~~~V~rtclmti~fLilagq~KV-KGql----g~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 984 DADVRRTCLMTIHFLILAGQLKV-KGQL----GKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHHHHHHHHHHHHHHHccceee-ccch----hhhHhhccCCcchHHHHHHHHHHHHH
Confidence 89999999888888876533332 1122 22334556677666655544443333
No 271
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=5.4e+02 Score=36.53 Aligned_cols=276 Identities=19% Similarity=0.224 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccc--------cHHHHHHHHHhhcCCC
Q 000049 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDN 2124 (2629)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~--------~~~~ll~~Ll~~l~d~ 2124 (2629)
...+++.+++..|..|.+.+-..+=.++..+.++++.++..+..|+-.++..++-. ..+-++..+-..++..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 34577888888999999988777777777788889999999988988888765432 2344455555555432
Q ss_pred ChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccc-hHHHHHHHHhhh
Q 000049 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTS 2203 (2629)
Q Consensus 2125 ~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-l~~~l~~~l~~~ 2203 (2629)
....| +-..+..++++++....+++.++++.++..++.....-...-...+-.+++...+.+... ++..+.+.....
T Consensus 648 ~~s~~--~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~ 725 (1014)
T KOG4524|consen 648 GMSPR--VPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ 725 (1014)
T ss_pred CCCch--hHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 22222 234555667777777788888888888888874432212222233333333333222211 221222221111
Q ss_pred hhhhhhhhcCCcccccCCCCcccc-----------hhhHHHHH-H----HHhcC----CHHHHHHHHHHHHHHHhhc-Ch
Q 000049 2204 RDKERRKKKGGPILIPGFCLPKAL-----------QPLLPIFL-Q----GLISG----SAELREQAALGLGELIEVT-SE 2262 (2629)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~l~k~l-----------~~ilp~ll-~----~L~~~----~~~~r~~aa~~L~~l~~~~-~~ 2262 (2629)
..... .. +|..+ ..+.+.+. . ++.++ .++.+.. .--.+=-..+ +.
T Consensus 726 ~~k~l-------~e-----~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~--e~edens~~~d~e 791 (1014)
T KOG4524|consen 726 STKVL-------NE-----LPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREE--EVEDENSEYTDTE 791 (1014)
T ss_pred HHHHh-------hc-----chhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCC--CccccccCCCCCC
Confidence 00000 00 11111 11122211 1 22211 0110000 0000000000 00
Q ss_pred hhhhh---chhhhhHHHHHHhcCCCCHhHHHHHHHHHHH---HHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000049 2263 QSLKE---FVIPITGPLIRIIGDRFPWQVKSAILSTLSI---IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA 2336 (2629)
Q Consensus 2263 ~~l~p---~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~---L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~a 2336 (2629)
..+.+ .+..|++.-++.+... +-.+|..+|.+|.. ++...+..+-|.+.+.|+.++.++.+.++-+-..|..|
T Consensus 792 p~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~ 870 (1014)
T KOG4524|consen 792 PILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSC 870 (1014)
T ss_pred CCCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHH
Confidence 00111 2345666667777664 67789999999874 45566677778888899999999999999999999999
Q ss_pred HHHHHhccC
Q 000049 2337 LGKLSALST 2345 (2629)
Q Consensus 2337 Lg~l~~~~~ 2345 (2629)
+-.+..+.+
T Consensus 871 i~~m~~~sg 879 (1014)
T KOG4524|consen 871 IEQMGKYSG 879 (1014)
T ss_pred HHHHHHHhh
Confidence 999866543
No 272
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=66.50 E-value=61 Score=35.64 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhc
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
..+..|.+-+.++ ++++..-|+..++.+...+|..|...+. +++.-+...+.+ .++.|++.+...+..-...+.
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5677787778776 8999999999999999999987765554 567777777776 688899988777777665554
No 273
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.05 E-value=60 Score=35.64 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch---------------hhHHHhHHHH
Q 000049 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------SQLLSFMDEL 1966 (2629)
Q Consensus 1902 R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~---------------~~l~~~l~~l 1966 (2629)
|...+.++..++....+...|.+++.+.+.++. ++.........|..+.+.+.. ..+....+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 444455566666555444455555555554443 233333333333333222210 1123344556
Q ss_pred HHHHHHHhcCCc----HHHHHHHHHHHHHHHHHhChhhh--hhhHHHHHHhccCcCchhHHHHH
Q 000049 1967 IPTIRTALCDSI----LEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTALDG 2024 (2629)
Q Consensus 1967 l~~l~~~L~d~d----~~VR~~A~~al~~l~~~~g~~~~--~~ilp~Ll~~L~~~~~~~~aL~~ 2024 (2629)
++.+...+.... +++...+.+++...........+ .++++.+++.|.++.....|.+.
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~c 147 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666555432 77788888888887765544322 34677778877766655555443
No 274
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=65.12 E-value=50 Score=34.96 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHH---HHHHHHHHHhc--------CCChhHHHHHHHH
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP---NMISTLIVLLS--------DSDSTTVAAAWEA 2176 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~---~il~~Ll~ll~--------d~d~~V~~~a~~a 2176 (2629)
..+..++..|.+.+++.++.|+.-++.+|-.+|...+.+|...+. .++..+...-. +....||..|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 457889999999999999999999999999999887766654432 34455444332 2235799999998
Q ss_pred HHHHHh
Q 000049 2177 LSRVVA 2182 (2629)
Q Consensus 2177 L~~l~~ 2182 (2629)
+..++.
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 888764
No 275
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=64.47 E-value=3.3e+02 Score=34.48 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHH
Q 000049 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGE-------RVLPSIIPI 1927 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~---~~~~~R~~A~~~L~~lv~~~~~-------~~l~~llp~ 1927 (2629)
++|-.....++..+-......+..++..+....+..+.+ ..|+.|..-...|..+++.+.+ .....++..
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 334444444444444433344455555555555566653 5689999999888888876533 334567777
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhch---h----hHHHhHHHHHHHHHHHhcCCc
Q 000049 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGK---S----QLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~---~----~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
+..+++.+++++...++.++.+++..+.. + -...|+-.++..+...+.|++
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 78889999999999999999998877654 2 223444555566666666654
No 276
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=64.46 E-value=40 Score=47.01 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHH
Q 000049 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233 (2629)
Q Consensus 2154 il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ 2233 (2629)
-+..|+.+++.++..+.+.+-..+...+...... -++..+.+..-..+... ....+.++.-| +-..++..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~y~~~t~s~~------~~~il~~~~~P-~~K~~~~~ 74 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---WLVNGLVDYYLSTNSQR------ALEILVGVQEP-HDKHLFDK 74 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---HHHHHHHHHHhhcCcHH------HHHHHHhcCCc-cHHHHHHH
Confidence 3556777888888888877777777766543222 22333322222221110 00123333333 11223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch-hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000049 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2629)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2629)
+-+.+. .++-|..++..|+.++..-+ ..+...+ ..++.-|++.|....+..+...|+.+|..|+-.++..+.+|+|
T Consensus 75 l~~~~~--~~~~Rl~~L~Ll~~~v~~qp-~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 75 LNDYFV--KPSYRLQALTLLGHFVRSQP-PWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred HHHHHc--CchhHHHHHHHHHHHHhcCC-chHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 333333 45789999999999998766 3333332 3556677777765567788889999999999999999999999
Q ss_pred HHHHHHHHHc
Q 000049 2313 QLQTTFIKCL 2322 (2629)
Q Consensus 2313 ~L~~~~~k~L 2322 (2629)
.|..+|.+.+
T Consensus 152 ~Lf~If~Rl~ 161 (668)
T PF04388_consen 152 DLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 277
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.24 E-value=3.5e+02 Score=33.27 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=64.7
Q ss_pred hhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--chhhhHHHHH
Q 000049 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLPSIIPIL 1928 (2629)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~--~~l~~llp~L 1928 (2629)
..+.+.++.||++|+..+-.+.....+.+..+-...++.+.+.+.+..+ -..|+.++..+..+.+- ..+..++..+
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l 87 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKVL 87 (353)
T ss_pred HHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3457889999999998887776665556666667788888888887665 34566677666654432 2344466666
Q ss_pred hhhcCCCChhHHHHHHHHHHHH
Q 000049 1929 SRGLKDPSASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1929 ~~~L~d~~~~vR~~a~~aL~~l 1950 (2629)
...+.++....-...|..|..+
T Consensus 88 ~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 88 MDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHhcCcccchHHHHHHHHHHh
Confidence 6666666444444556665554
No 278
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.53 E-value=9.3 Score=31.98 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=29.2
Q ss_pred HHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHH
Q 000049 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523 (2629)
Q Consensus 1482 L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL 1523 (2629)
|+.+....|..+.. +.+...+...+.|+++.||++|...+
T Consensus 3 l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45555555555432 47778888899999999999998753
No 279
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.24 E-value=23 Score=35.09 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=56.7
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg 2338 (2629)
..+..|+..++....+.++|..+++++..++...+..++.-.+.+...+-....|.++++-..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345667777766656789999999999999999998899888999999988888888887777776653
No 280
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=58.60 E-value=5.6e+02 Score=33.80 Aligned_cols=263 Identities=12% Similarity=0.123 Sum_probs=149.0
Q ss_pred CHhHHHHHHHHHHHHHHhcCCC-ccCchH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHH-hccCChhHHHHHHH----Hh
Q 000049 2285 PWQVKSAILSTLSIIIRKGGIA-LKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLL----SS 2357 (2629)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~-l~p~lp-~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~-~~~~~~~~ll~~Ll----~~ 2357 (2629)
.|.-...+.+.|..++...+.. .+.+++ ++...++..+..+++.-|......|-.+- ...+....+...+. .-
T Consensus 103 ~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~f 182 (409)
T PF01603_consen 103 SWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRF 182 (409)
T ss_dssp THHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5666666777777666543211 333554 67888888998899999988888887763 23232222222222 22
Q ss_pred hhcC-CHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 000049 2358 LQVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD-DHVRVSAASILGIMSQCMEDGQLADLLQELL 2435 (2629)
Q Consensus 2358 l~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~-~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll 2435 (2629)
+.++ ..-.-..+|+-++.++.+....+.+.+..-+...+..+...+. ......-..|+.......|. -...+++.++
T Consensus 183 i~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~-l~~~~i~~ll 261 (409)
T PF01603_consen 183 IYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS-LAEPVIKGLL 261 (409)
T ss_dssp HHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG-GHHHHHHHHH
T ss_pred hcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3322 2444456788888888877766666677777777776666553 23345667777777765553 4556666666
Q ss_pred hhcCCCCchhhHhHHH-HHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHH-HhhhhhcCCCCchh
Q 000049 2436 NLASSPSWAARHGSVL-VFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL-LLHQIQSGPANTTV 2513 (2629)
Q Consensus 2436 ~~~~~~~~~~~~~~~~-~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l-l~~~~~~~~~~~~~ 2513 (2629)
.. -+.....+...++ -+..++...+...+ ......+...+...+.|.+..+.+.|..-...- +...... +...
T Consensus 262 k~-WP~t~s~Kev~FL~el~~il~~~~~~~f-~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~---~~~~ 336 (409)
T PF01603_consen 262 KH-WPKTNSQKEVLFLNELEEILEVLPPEEF-QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ---NSRV 336 (409)
T ss_dssp HH-S-SS-HHHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC---THHH
T ss_pred Hh-CCCCCchhHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh---ChHH
Confidence 51 2233333443333 33344443333222 234556778888889999998887776654421 1111111 1122
Q ss_pred h-HHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000049 2514 V-VDILASVVSAL-HDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2629)
Q Consensus 2514 l-~~~l~~l~~~l-~~~~~~vr~~al~~l~~~a~~~~~~v~~ 2553 (2629)
+ .-+.+.+.+.. ++-+..||..|..+++.+....|+....
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 2 33444544433 5778899999999999999988877544
No 281
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.57 E-value=37 Score=35.59 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccCChhHHHHH------HHHhhhcCCHHHHHHHHHHHHHHHhh
Q 000049 2313 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKH 2379 (2629)
Q Consensus 2313 ~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~~~~ll~~------Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2629)
++...+++.|..+ ++.+-..|+.-+|.++...|+-..++.. ++..+..+|++||..++.|+..++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4556666667544 7778888999999999988877666653 56667788999999999999887753
No 282
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.51 E-value=23 Score=40.09 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---
Q 000049 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--- 1532 (2629)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2629)
+..++|.+.++|.+-+...|..|-+.+..+....++.+-+.||+++..+...|...+.+|...+.++|.++....+.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 45788999999988777777777777777666667777788999999999999999999999999999988755431
Q ss_pred ---hhHHhHHHHHH
Q 000049 1533 ---PEIASLVPTLL 1543 (2629)
Q Consensus 1533 ---~~i~~lvp~Ll 1543 (2629)
|++..++|.+-
T Consensus 192 aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 192 ALVPFYRQLLPVLN 205 (262)
T ss_pred hhhhHHHHhhhhhh
Confidence 55666666653
No 283
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=58.08 E-value=41 Score=36.74 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=54.6
Q ss_pred chHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000049 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
.+...+..+|.+.+++||..|.+||-..- +|++.++-+.|...++|. ..|+.+..+....-.+.+.+..-+.++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 45556778899999999999999998764 566666666676666653 345444444322222235666777888
Q ss_pred HHHHHhh
Q 000049 1579 PIVHRGL 1585 (2629)
Q Consensus 1579 p~L~~~L 1585 (2629)
|++.+.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 8888865
No 284
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.78 E-value=5.8e+02 Score=37.04 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=74.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhc-CCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH
Q 000049 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 2478 (2629)
Q Consensus 2400 l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~ 2478 (2629)
..|-++.+|..+.+-||.-+...|+--+..-+-..+.|. .+..-.+|..++.+|..+....-....-..+.+.+-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 445689999999999999999999743332222334564 4556668888888888887662221111123344444444
Q ss_pred hhh-cCCChhHHHhHHHHhHHHHhhhhhcCCCCchhh-HHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000049 2479 SSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVV-VDILASVVSALHDDSSEVRRRALSALK 2541 (2629)
Q Consensus 2479 ~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l-~~~l~~l~~~l~~~~~~vr~~al~~l~ 2541 (2629)
+.+ .+.++.+| ++|-.+..... .+ ..+ ..-+..+...+-|.+..++++|..-+.
T Consensus 376 eMadrd~~~~Vr-----av~L~~~~~~~-~~---g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 376 EMADRDRNVSVR-----AVGLVLCLLLS-SS---GLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHhhhcchhHH-----HHHHHHHHHHh-cc---cccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 444 44444444 44432222111 01 111 233444555555778888888766655
No 285
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.59 E-value=2.6e+02 Score=40.86 Aligned_cols=227 Identities=15% Similarity=0.170 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhhHHHHHh
Q 000049 1393 AKRREGALLAFECLCEKLGRLF---EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLK 1465 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~~~~---~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~ 1465 (2629)
..+|...+.++-.+.+..|... -+++.+++..+...-...+..+-+-+..+++.+++. ++...+..++..+..
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 5677778888888888888432 356666666555544444555666677888887764 455566667766665
Q ss_pred hhcc-CChhhhHHHH---HHHHHHHhh----Cchhhh---------------hhccc-----hHHHHhhhhcCCCHHHHH
Q 000049 1466 GLED-KAWRTKQSSV---QLLGAMAYC----APQQLS---------------QCLPK-----IVPKLTEVLTDTHPKVQS 1517 (2629)
Q Consensus 1466 ~L~~-~~w~~r~~a~---~~L~~la~~----~p~~l~---------------~~L~~-----ivp~L~~~L~D~~~~VR~ 1517 (2629)
.-.. .+-.+-..|+ +.++.+.+. ..+... ..+++ ++..+.+++.|..++||+
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRn 1015 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRN 1015 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhh
Confidence 4332 2222333332 233333322 000000 01122 344556778899999999
Q ss_pred HHHHHHHHHhhhcCc----hhH-----HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCC
Q 000049 1518 AGQTALQQVGSVIKN----PEI-----ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2629)
Q Consensus 1518 aA~~aL~~l~~~~~~----~~i-----~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~ 1588 (2629)
.|++++-++...-++ ... .-++|.|-+. |...+.+ ..+... ++
T Consensus 1016 gAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~---~~q~~~e---------wngkei----------------qk 1067 (1610)
T KOG1848|consen 1016 GAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQ---PIQNVSE---------WNGKEI----------------QK 1067 (1610)
T ss_pred hHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccc---cccchhh---------hcchhH----------------hh
Confidence 999999888765442 112 2233333211 1111100 000000 00
Q ss_pred CHHHHHHHHHHHHHHhhhcCCC-------CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEP-------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~-------~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+| -...+-+++.+++.+.+. ..+...++.++..+..+..+.++++.-.|++++..+...
T Consensus 1068 qw--tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1068 QW--TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hh--hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 01 112333344444433221 223345677888888888899999999999999877653
No 286
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.06 E-value=1.5e+02 Score=32.48 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=52.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2629)
..+..|.+-+.+. ++++..-|+..+..+.+.+|..|...+. .++.-+.+.+.+ .++.|++.....+..-..
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5666777778776 7999999999999999999987765543 455556666542 567888887666665544
Q ss_pred hh
Q 000049 1450 QL 1451 (2629)
Q Consensus 1450 ~l 1451 (2629)
.+
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 43
No 287
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.50 E-value=1.5e+02 Score=32.47 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=54.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhc
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
..+..|.+-+.++ ++++..-|+..++.+...+|..|...+. .++.-+...+. ..++.|++.+...+..-...+.
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5677788888775 8999999999999999999976665443 45555555554 5678899888777766655443
No 288
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.07 E-value=89 Score=33.13 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=38.9
Q ss_pred hHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHh
Q 000049 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2629)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ 1737 (2629)
..+.+++..+.+-+++.+++||--++.++.+++..-++.|...+..
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 4567888888999999999999999999999998877778777654
No 289
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=54.81 E-value=5.8e+02 Score=32.85 Aligned_cols=293 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhh-chhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc
Q 000049 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE-FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2629)
Q Consensus 2232 p~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p-~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2629)
+.++..+..++.-.-..++..++.++.... ..+.. -..-..+.|...+....+.+....+..+|..+++.-.-...-.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Q ss_pred hHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHH------HhccCChhHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHhhc-
Q 000049 2311 LPQLQTTFIKCL-QDS-TRTVRSSAALALGKL------SALSTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHA- 2380 (2629)
Q Consensus 2311 lp~L~~~~~k~L-~d~-~~~vR~~Aa~aLg~l------~~~~~~~~~ll~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~- 2380 (2629)
...=...++..+ +.. +-.+.-....|+-.| +..- .--.+++.|...++... ..|-.-++..++.++.+.
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q ss_pred -----CCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhH-HHHHHHHH----HhhcCCCCchhhHh
Q 000049 2381 -----GKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQ-LADLLQEL----LNLASSPSWAARHG 2448 (2629)
Q Consensus 2381 -----g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~-~~~~l~~l----l~~~~~~~~~~~~~ 2448 (2629)
+.....-....+...+..+-... |++.+...-..-..|.....+-. ++.+..++ +.|-+......-+
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW- 353 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW- 353 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH-
Q ss_pred HHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCC-hhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHH---HHHhh
Q 000049 2449 SVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDILA---SVVSA 2524 (2629)
Q Consensus 2449 ~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~---~l~~~ 2524 (2629)
.++...+....+ +++..|...+...+ |.+=.-|..-+|.++.+..+. ..+.+-++ .++..
T Consensus 354 ---------~eNa~rlnenny--ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-----k~vv~k~ggKe~vM~L 417 (442)
T KOG2759|consen 354 ---------RENADRLNENNY--ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-----KAVVEKYGGKERVMNL 417 (442)
T ss_pred ---------HHhHHHHhhccH--HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-----hHHHHHhchHHHHHHH
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 000049 2525 LHDDSSEVRRRALSALKSV 2543 (2629)
Q Consensus 2525 l~~~~~~vr~~al~~l~~~ 2543 (2629)
+++++++||..|+.++..+
T Consensus 418 lnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 418 LNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred hcCCCchHHHHHHHHHHHH
No 290
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=54.79 E-value=1.6e+02 Score=34.14 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~ 1956 (2629)
+...++.+++...+++..+|..|.+.+..+.+. |--.-...+|.+.....|+++.+|..|...+.++.+.++.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 334455566666789999999999999888763 3222346778888888899999999999888887766543
No 291
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.63 E-value=96 Score=33.99 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=52.3
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCC--CHH--HHHHHHHHHHHHHHhh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQ--VVA--VREAAECAARAMMSQL 1451 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~--~~~--VR~aa~~al~~i~~~l 1451 (2629)
..+..|.+-+.+. ++++..-|+..+..+...+|..|...+. .++..+...+.++ .+. ||+.+...+..-...+
T Consensus 42 ea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6777888888886 8999999999999999999976665542 4555555544332 222 8888777766665554
No 292
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=53.62 E-value=90 Score=32.81 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=61.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHH-
Q 000049 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ- 1420 (2629)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~- 1420 (2629)
+++..+..+.+..-......+..++... .... ..++..|.+-+.+. +|++..-|+..+.++...+|..|..++..
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~~-~~~~--~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINET-NVGP--KEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHCC-CccH--HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 3344444333333334444444444332 2222 26888888888877 89999999999999999999767666542
Q ss_pred -HHHHHHH-----Hc-CCCCHHHHHHHHHHHHH
Q 000049 1421 -MLPLLLV-----AF-SDQVVAVREAAECAARA 1446 (2629)
Q Consensus 1421 -ilp~ll~-----~l-~D~~~~VR~aa~~al~~ 1446 (2629)
.+..++. .. .+.+..||+.+...+..
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 80 DFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 2222222 11 24577888887655543
No 293
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=53.40 E-value=2.5e+02 Score=30.90 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
+.+....+..|.+.+++.++.+...|+.++..+.++.+..+-..+ ..++..|..++. ..+..|++.+...+......
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999998876554332 456677777765 56778999888888877766
Q ss_pred cCcc
Q 000049 2184 VPKE 2187 (2629)
Q Consensus 2184 ~~~~ 2187 (2629)
...+
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 5543
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.13 E-value=1.3e+03 Score=36.55 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
...+++..+..+...++..+......+.... ++.++...+... ..+.....++.+..--...-..+++.+|
T Consensus 933 ~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~-~~~~v~~i~~~i~~~~~d~i~~~~~~~~------- 1004 (2382)
T KOG0890|consen 933 FKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLEHI-ELNLVSSILDFISLDNRDNIQILKSDIP------- 1004 (2382)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhccc-cHHHHHHHHHHHHHhhHHHHHhhhcccc-------
Confidence 4678889999999999988876666666666 567777766322 4445555555443211111011111111
Q ss_pred HHcCCCCHHHHHHHHHHHHH-HHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC--------CCc-ChHHH
Q 000049 2320 KCLQDSTRTVRSSAALALGK-LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG--------KSV-SSAVK 2389 (2629)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~-l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g--------~~~-~~~~~ 2389 (2629)
.+.+-.+-.+..++.-..+ +.... .++..++.....+......||.-.+.-+...+.+.. ..+ .++..
T Consensus 1005 -~l~~~p~~~~~~~~~~~~r~~~~~~-~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l 1082 (2382)
T KOG0890|consen 1005 -ILPSIPELGNLKAAIQEARGLLSED-DLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDL 1082 (2382)
T ss_pred -ccCCchHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhH
Confidence 1111111112122111111 11111 345556666666666667777777777776665211 111 13556
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
.++...|...+.+.+......+|+|||.++...|.
T Consensus 1083 ~ql~~~Ll~gc~k~~~~~~~~~akcLg~lgaidp~ 1117 (2382)
T KOG0890|consen 1083 SQLLTVLLDGCQKKTSQLEELCAKCLGELGAIDPS 1117 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence 77777777777666677889999999999987775
No 295
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=52.59 E-value=48 Score=33.33 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Q 000049 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2629)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l 2340 (2629)
.+|.+|..|...|+.++++.+......-|.+.+++.+.+.|+ +...+--|..+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999988877777789999999999997 455666666666655
No 296
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.36 E-value=1.2e+02 Score=32.90 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=64.4
Q ss_pred cchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch--hhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHh
Q 000049 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRK 2302 (2629)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~ 2302 (2629)
+....+..+.+.|.++++.+...|+..|..+++.+| ..|...+ ..++..|.+++..+.+.. |+..++.++......
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 334566778888999999999999999999999999 4444333 346677888888776555 999999999888776
Q ss_pred cCCCccCchHHHHH
Q 000049 2303 GGIALKPFLPQLQT 2316 (2629)
Q Consensus 2303 ~~~~l~p~lp~L~~ 2316 (2629)
.+. .|-++.+..
T Consensus 113 f~~--~~~~~~i~~ 124 (133)
T smart00288 113 FKN--DPDLSQIVD 124 (133)
T ss_pred HcC--CCCchHHHH
Confidence 543 344444443
No 297
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.77 E-value=3e+02 Score=30.16 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCC-C-hh--HHHHHHHHHHHH
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDS-D-ST--TVAAAWEALSRV 2180 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~-d-~~--V~~~a~~aL~~l 2180 (2629)
..+....+..|.+.+++.++.+...|+.++..+.++.+..+-..+ ..++..|..++.+. . .. |++.+.+.+...
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999887665443 45777777766533 2 22 888888877777
Q ss_pred HhhcCc
Q 000049 2181 VASVPK 2186 (2629)
Q Consensus 2181 ~~~~~~ 2186 (2629)
......
T Consensus 117 ~~~f~~ 122 (140)
T PF00790_consen 117 AEAFKS 122 (140)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 666533
No 298
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.80 E-value=1.8e+02 Score=31.51 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=54.5
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhc
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD---QVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D---~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
..+..|.+-+.+. +++++.-|+..+..+...+|..|...+. +.+.-+...+.. .++.||+.+...+..-...+.
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5677888888876 8999999999999999999986655443 344455555554 467888888777766655444
No 299
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=50.59 E-value=1.7e+02 Score=32.63 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCC-------CChhHHHHH-HHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 000049 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-------NQASIRRSS-AYLIGYFYKNSKLYLVDEAPNMISTLIV 2160 (2629)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d-------~~~~vR~~a-~~~L~~l~~~~~~~~~~~~~~il~~Ll~ 2160 (2629)
.+-..+..++-.++....+..++++.-.+.+|... .....|..+ ...+..+++..+.-+.+|...++.....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777888899999999999843 223444444 4556677888888899999999988888
Q ss_pred HhcC
Q 000049 2161 LLSD 2164 (2629)
Q Consensus 2161 ll~d 2164 (2629)
.++.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 7753
No 300
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=49.06 E-value=22 Score=29.05 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.2
Q ss_pred cchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.+.+|.+.+++.+.+++++..|+++|.+++
T Consensus 11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788888998889999999999999886
No 301
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=48.54 E-value=47 Score=33.37 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCC--hhHHHHHHHHHHHH
Q 000049 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS--ASRRQGVCIGLSEV 1950 (2629)
Q Consensus 1896 ~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~--~~vR~~a~~aL~~l 1950 (2629)
+.++..|..|+..|+.++++.+.. ..+.+...+.+.+.|++ ...+.|+..+|.++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998864 57888888888888654 56788999998876
No 302
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.97 E-value=2.9e+02 Score=29.97 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=60.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSD--STTVAAAWEALSRVVA 2182 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~d--~~V~~~a~~aL~~l~~ 2182 (2629)
..+....+..|.+.+++.++.+...|+.++..+.++.+..+...+ ..++..|..++.+.. +.|++.+...+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999877654333 456777777776443 3388887777777665
Q ss_pred hcC
Q 000049 2183 SVP 2185 (2629)
Q Consensus 2183 ~~~ 2185 (2629)
...
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 553
No 303
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=47.86 E-value=8e+02 Score=32.44 Aligned_cols=310 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HhCCC-hhhhHhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHh---------------hcccccHHH
Q 000049 2054 AHALGALAE---VAGPG-LNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL---------------VIDEEGVES 2112 (2629)
Q Consensus 2054 ~~aL~~La~---~~g~~-l~~~l~~il~~Ll~~L--~~~~~~vr~~a~~al~~l~~---------------~~~~~~~~~ 2112 (2629)
+-|+|.+.. ++|+. -...-+.++|.-++.+ +......|-++..-+-.++. +--...+++
T Consensus 18 alalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lne 97 (589)
T PF11229_consen 18 ALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNE 97 (589)
T ss_pred HHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHH
Q ss_pred HHHHHHhhcC-CCChhHHHHHHHHHHHHHHhc----------hhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000049 2113 LVSELLKGVG-DNQASIRRSSAYLIGYFYKNS----------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2629)
Q Consensus 2113 ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~~~~----------~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~ 2181 (2629)
++..+.+.+. +..-..+.+++..+|.+.-.+ +.||+-. ++..+..++..-+-.--
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYL--------------pE~S~iRaai~f~i~~G 163 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYL--------------PESSFIRAAIDFLIEAG 163 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccC--------------cchhHHHHHHHHHHHcc
Q ss_pred hhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2629)
Q Consensus 2182 ~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~ 2261 (2629)
++-+...-+.+++.+-..+..+ |....+| |-.-..++..+... +-..+++..+.+.-..=++...
T Consensus 164 kkGpe~vpp~lvkvvl~~ia~v---------geS~qyP----PVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq 228 (589)
T PF11229_consen 164 KKGPESVPPSLVKVVLKPIATV---------GESYQYP----PVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ 228 (589)
T ss_pred ccCCccCCHHHHHHHHHHhhhc---------CCCCCCC----CccHHHHhhHHHhc--cccHHHHHHHHHHHHHhccccc
Q ss_pred hhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC-CccCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Q 000049 2262 EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGK 2339 (2629)
Q Consensus 2262 ~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~-~l~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~ 2339 (2629)
..-.-.-.-+.+|++..+ +...|...+..+......++. .++.|+..+.-...+..+.. ++++...+...|..
T Consensus 229 -sAa~fLg~WlsPpli~sL----s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq 303 (589)
T PF11229_consen 229 -SAAMFLGSWLSPPLIHSL----SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ 303 (589)
T ss_pred -cHHHHHHhhcCcchhhhh----hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q ss_pred HHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2340 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2340 l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
-++..+--+....-|.+.. ++|++.+-+-++..+-+.-...|+||..+.
T Consensus 304 AMKlP~P~~h~Ws~Lc~tt-------------------------------ekIF~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 304 AMKLPSPAQHCWSLLCETT-------------------------------EKIFDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred HhcCCChhhHHHHHHHHHH-------------------------------HHHHHhCcccccHHHHHHHHHHHHHHhhcC
Q ss_pred hcCChhHHHHHHH
Q 000049 2420 QCMEDGQLADLLQ 2432 (2629)
Q Consensus 2420 ~~~~~~~~~~~l~ 2432 (2629)
. ++++.+-+
T Consensus 353 d----~eidrItq 361 (589)
T PF11229_consen 353 D----TEIDRITQ 361 (589)
T ss_pred H----HHHHHHHH
No 304
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=47.26 E-value=9.2e+02 Score=32.98 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=59.1
Q ss_pred HHHHHhhcccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhc-hhhhh-hhHHHHHHHHHHHhcCCChhHHHHHH
Q 000049 2098 AETVTLVIDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNS-KLYLV-DEAPNMISTLIVLLSDSDSTTVAAAW 2174 (2629)
Q Consensus 2098 l~~l~~~~~~~~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~~~~-~~~~~-~~~~~il~~Ll~ll~d~d~~V~~~a~ 2174 (2629)
++.++..+..+.+..++..+...++ +....+|.+.+..++.+.+.. +.+.. +..+.+..-.-.++.|.+--++..|.
T Consensus 465 ~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 465 LSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 3334444555667777777766664 344468888888888887542 22222 33455555555568899999999999
Q ss_pred HHHHHHHhhcCc
Q 000049 2175 EALSRVVASVPK 2186 (2629)
Q Consensus 2175 ~aL~~l~~~~~~ 2186 (2629)
+|++.++...+.
T Consensus 545 eAF~~FAe~T~~ 556 (559)
T PF14868_consen 545 EAFGQFAERTSH 556 (559)
T ss_pred HHHHHHhccCCc
Confidence 999999876543
No 305
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=46.80 E-value=33 Score=28.81 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECA 1443 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~a 1443 (2629)
.+...+...+.|+++.||++|.+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 678888889999999999998764
No 306
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=46.78 E-value=1.2e+02 Score=31.15 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCC
Q 000049 282 LSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP---DALEAMFYAIKAVIGGS 339 (2629)
Q Consensus 282 ls~~~~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~~~d~---~~~~~~~~~i~~~l~~~ 339 (2629)
+..++..++--+.+.+-+-.+.||..|+.++..|...|.+. ....+++++.++.++..
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 44456778889999999999999999999999999998776 34558999999988874
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=46.64 E-value=2.5e+02 Score=30.87 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=51.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHhh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFS---DQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~-ll~~l~---D~~~~VR~aa~~al~~i~~~l 1451 (2629)
..+..|.+-+...+++++..-|+..+..+.+.+|..|...+. +++.- +...+. +....|++.+...+..-...+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 567777777764447888888999999999999976765543 45554 555554 244578888777666665544
Q ss_pred c
Q 000049 1452 S 1452 (2629)
Q Consensus 1452 ~ 1452 (2629)
.
T Consensus 118 ~ 118 (141)
T cd03565 118 R 118 (141)
T ss_pred C
Confidence 3
No 308
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=46.50 E-value=1.3e+03 Score=34.61 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=100.9
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHh---hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG---LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~---~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g 1651 (2629)
..+|..+...|.....++....+.+|.||....+. .+...+. .+.....-.+.......-+....+|-.|.....
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~--nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS--NMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc--cHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 34566666666666556666666666666554221 1111111 122222223344444555666777777766555
Q ss_pred CC-----CchhhHHHHHHHhccCCChHHHH-------HHHHHHHHHHHhhChh--HH--HhHhHHHHHhhcCCChhhHHH
Q 000049 1652 EE-----NFPDLVSWLLDALKSDNSNVERS-------GAAQGLSEVLAALGTV--YF--EHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1652 ~~-----~~~~ll~~Ll~~L~~~~~~~~R~-------~a~~~L~~i~~~~g~~--~l--~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
+. ..+..+.+|...|.-+.... -. |....++..+.....- .+ ...+..+++.+.+..-.+-..
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~-tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSN 549 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSN-TLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSN 549 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcc-hhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeec
Confidence 43 24566777777776442110 11 1112222222222111 11 456777777777766555556
Q ss_pred HHHHHHHhhhhhccchHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000049 1716 YLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2629)
Q Consensus 1716 a~~~l~~L~~~~g~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~~ 1767 (2629)
++-.|..|....+.+ ..|+- ..++.+.+.+...+..+-..+..++..++..
T Consensus 550 aCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred chhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 666666666555443 23332 3677777788777777777777888777654
No 309
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=46.49 E-value=32 Score=28.47 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000049 2516 DILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2516 ~~l~~l~~~l~~~~~~vr~~al~~l~~~a~ 2545 (2629)
..++.++..+.+++.++++.|+.+|+.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999998873
No 310
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=45.63 E-value=9.7e+02 Score=32.78 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred ccccCChhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
+.+..++..+..++..+...+. +....+|-..++.++.+++..-.+++-.+..+.+...+..+|.|.+|-++..|..++
T Consensus 468 ~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF 547 (559)
T PF14868_consen 468 FIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAF 547 (559)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4556666777777777777774 344569999999999998764333332356677777777788999999999999999
Q ss_pred HHHHhhhC
Q 000049 1644 GSLIRGMG 1651 (2629)
Q Consensus 1644 ~~l~~~~g 1651 (2629)
+.+++...
T Consensus 548 ~~FAe~T~ 555 (559)
T PF14868_consen 548 GQFAERTS 555 (559)
T ss_pred HHHhccCC
Confidence 99998543
No 311
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=45.30 E-value=26 Score=34.93 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
..|++++..|+++....|-.+.+.+|+++..|....+| ...|+..+-++|..|-+.-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 46889999999999999998888999999988888887 667999999999999876543
No 312
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=44.96 E-value=65 Score=33.11 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=49.0
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccC
Q 000049 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~ 1669 (2629)
+.+.||.+.++..+...+.+-.++||..+.+.|..+.+..++. ++..+++.++..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4578899999999999999999999999999999999988866 3556777766666543
No 313
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=44.76 E-value=8e+02 Score=31.54 Aligned_cols=126 Identities=13% Similarity=0.161 Sum_probs=81.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIAL 2307 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l 2307 (2629)
++--+++.+.-....-+..-..-|.++.+.+.+..++..+..+..-+.+.++.. .-+|-.-|+...+ .+..-+....
T Consensus 300 VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~-HFQVAEraL~~wnNe~i~~Li~~n~ 378 (457)
T KOG2085|consen 300 VIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP-HFQVAERALYLWNNEYIRSLISQNA 378 (457)
T ss_pred HHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh-hHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 344444444433333333456678899999888888877777766666666543 4556555655544 3344444455
Q ss_pred cCchHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhh
Q 000049 2308 KPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~ 2359 (2629)
.-++|-+.+.+-+.-+.. |.++...+...+..++.+++ .++.++....+
T Consensus 379 ~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~---~LFeec~~~y~ 428 (457)
T KOG2085|consen 379 EVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDP---KLFEECLALYK 428 (457)
T ss_pred ceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHH
Confidence 567788888888776655 88999999999988877664 45666665554
No 314
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.72 E-value=2.7e+02 Score=39.12 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=62.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG 1455 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2629)
.++..|.+++.+ +..|..++..|+.+...-+..+...+. .+++.+++++. |.+..|-..|..++-.+...++. .
T Consensus 70 ~~~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~ 145 (668)
T PF04388_consen 70 HLFDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-S 145 (668)
T ss_pred HHHHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-h
Confidence 678888888864 468999999999988765543333222 57888888875 88889999999999888887754 3
Q ss_pred HHhhHHHHHhh
Q 000049 1456 VKLVLPSLLKG 1466 (2629)
Q Consensus 1456 v~~ilp~Ll~~ 1466 (2629)
+...||.|+..
T Consensus 146 l~~~L~~Lf~I 156 (668)
T PF04388_consen 146 LGPHLPDLFNI 156 (668)
T ss_pred hhHHHHHHHHH
Confidence 45666766654
No 315
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.56 E-value=2.9e+02 Score=29.94 Aligned_cols=77 Identities=17% Similarity=0.061 Sum_probs=55.2
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHH-HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhC
Q 000049 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALCD---SILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~d---~d~~VR~~A~~al~~l~~~~g 1997 (2629)
...+..|.+.++.+++.+...+...|..++.++|......+.. .++..+.+.+.. .++.||..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4556667777888899999999999999998887643333332 445555565544 488999999888887777665
Q ss_pred h
Q 000049 1998 M 1998 (2629)
Q Consensus 1998 ~ 1998 (2629)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 316
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=43.16 E-value=1.5e+03 Score=34.15 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=95.3
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHH--Hhc---CCCHHHHHHHHHHHHHH
Q 000049 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK--VLV---DPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1572 ~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~--~L~---d~~~~VR~~A~~aL~~l 1646 (2629)
..+.-.+|.+...+......+...+..++..+...--+..+...+ +..+.. ... ..+.+.-....+++..+
T Consensus 803 ~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~----lF~~~~~~~~~gs~~~~~el~q~~~k~~t~l 878 (1364)
T KOG1823|consen 803 SQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSE----LFKLLARKRHSGSPSTNFELCQDSFKGFTAL 878 (1364)
T ss_pred HHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHHHhhcCCCcccHHHHHHHHHHHHHH
Confidence 344455666666666666677777777776665421111111111 111111 111 12446667888888888
Q ss_pred HhhhCCC-CchhhHHHHHHHhccCCChHHHHHHHHHHHHH--HHhhChhHHHhHhHHHHHhhc-CCChhhHHHHHHHHHH
Q 000049 1647 IRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKY 1722 (2629)
Q Consensus 1647 ~~~~g~~-~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i--~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~a~~~l~~ 1722 (2629)
+...|.. ...+.+..++....+|..+..|.+.+..+..- .+..-...+.+++..+-+.+. +...+.|..+-..+-.
T Consensus 879 I~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r~i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~ 958 (1364)
T KOG1823|consen 879 IAQVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSRKIMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYS 958 (1364)
T ss_pred HHHhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 8888764 45678888888888877676787766554322 222222234455555544432 2334455444443322
Q ss_pred hhhhhccchHhhHHhHHHHHHhhcCCCChhHH
Q 000049 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754 (2629)
Q Consensus 1723 L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR 1754 (2629)
.-. .+....|++..++..++.......+.+|
T Consensus 959 ~~~-s~s~~~k~~~~~V~~l~~~~esg~esvr 989 (1364)
T KOG1823|consen 959 FLG-SKSKLEKQMEFMVDNLLYEVESGRESVR 989 (1364)
T ss_pred HHh-hcchhhHHHHHHHHHhhhhhhcccchhc
Confidence 211 3455567777666666555444444444
No 317
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.95 E-value=2.7e+02 Score=30.49 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=61.2
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d------~d~~V~~~a~~aL~ 2178 (2629)
+.+....+..+.+.+++.++.+...|+.++-.+.++.|..|-..+ .+++..|+.++.+ .+..|++.....+.
T Consensus 33 ~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 33 PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999887664433 4566777777753 56788888887777
Q ss_pred HHHhhcC
Q 000049 2179 RVVASVP 2185 (2629)
Q Consensus 2179 ~l~~~~~ 2185 (2629)
......+
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 7765554
No 318
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.35 E-value=2.2e+02 Score=33.54 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000049 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2629)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2629)
..++..+...+.|++..||.+..-+++.+
T Consensus 154 ~~~l~~~~~~~~d~~~~vq~ai~w~L~~~ 182 (213)
T PF08713_consen 154 DELLEIIEALLKDEEYYVQKAIGWALREI 182 (213)
T ss_dssp HHHHHHHHHCTTGS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 34444444445555555555554444444
No 319
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=39.68 E-value=1.1e+02 Score=34.31 Aligned_cols=115 Identities=15% Similarity=0.004 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh--ccchHHHHhhhhc
Q 000049 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVLT 1509 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~--L~~ivp~L~~~L~ 1509 (2629)
..+.+|..+.-++..+++.-...+.+.+-..+-..+.+........++.++..+.-..|+....- -+++++.+...+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 45678888888887776433333333333333334444444466666777776666666554332 2567777787777
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcC--chhHHhHHHHHHhcc
Q 000049 1510 --DTHPKVQSAGQTALQQVGSVIK--NPEIASLVPTLLMGL 1546 (2629)
Q Consensus 1510 --D~~~~VR~aA~~aL~~l~~~~~--~~~i~~lvp~Ll~~l 1546 (2629)
..+..++.+++++|..-+..-. +.-.+..++.|-+..
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888876553211 112245555555555
No 320
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=38.68 E-value=9.8e+02 Score=30.83 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=25.2
Q ss_pred cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
|+++..+...+...+......+.-++++|+..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 44777777788777888888888899999864
No 321
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=38.29 E-value=3.6e+02 Score=37.84 Aligned_cols=79 Identities=5% Similarity=0.161 Sum_probs=57.7
Q ss_pred cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--h---hHHhHHHHHH
Q 000049 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P---EIASLVPTLL 1543 (2629)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~---~i~~lvp~Ll 1543 (2629)
.........+++++..+.-.|.+++...-..++..+..+|.+.+++++-.++.++-.|+..-++ + .++.+++.+.
T Consensus 67 ~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~ 146 (819)
T KOG1877|consen 67 RERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFS 146 (819)
T ss_pred hccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHH
Confidence 3444445557888888887777777555567777788889989999999999999999976544 2 2466777777
Q ss_pred hccC
Q 000049 1544 MGLT 1547 (2629)
Q Consensus 1544 ~~l~ 1547 (2629)
+...
T Consensus 147 ~l~h 150 (819)
T KOG1877|consen 147 SLCH 150 (819)
T ss_pred HHhh
Confidence 6653
No 322
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=37.27 E-value=7.5e+02 Score=34.88 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHhhhhcCCCChhHHHHHHH----hhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccC
Q 000049 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLI----SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2629)
Q Consensus 1192 ~~R~~~~~~l~~l~~~~~~~~~~~i~~~li----~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~ 1267 (2629)
.+|.....+|..+..........+++.-++ .+.--|++..||..+..+...+..-+...+...++.+.|..+....
T Consensus 445 ~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~ 524 (1697)
T KOG3687|consen 445 AVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSL 524 (1697)
T ss_pred eEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhccc
Confidence 455555555555543222222233443332 2333467888999999999888888888888888888888887633
Q ss_pred C
Q 000049 1268 S 1268 (2629)
Q Consensus 1268 ~ 1268 (2629)
+
T Consensus 525 s 525 (1697)
T KOG3687|consen 525 S 525 (1697)
T ss_pred C
Confidence 3
No 323
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=36.68 E-value=58 Score=36.47 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHhc-
Q 000049 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLA- 1388 (2629)
Q Consensus 1313 ~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~- 1388 (2629)
.+++|..+.-++..++...++...+.+...++.+....+.+....+...+..+..+.+ ...+...++++.+...+.
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 4568888888888877666666677777777777755444566777777777776543 222333467788887776
Q ss_pred CCCCHHHHHHHHHHHHHHHH--HhccCchhHHHHHHHHHHHHcC-CCCHH-HHHHHHHHH
Q 000049 1389 DRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFS-DQVVA-VREAAECAA 1444 (2629)
Q Consensus 1389 ~~~~~~~R~~Al~al~~La~--~~~~~~~~~v~~ilp~ll~~l~-D~~~~-VR~aa~~al 1444 (2629)
..++.....+++.++..-|. .+...+ ..+-++.+-..++ +++.. +|-.|.-++
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 22356666666666655442 222222 2344555666664 34444 666654443
No 324
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=36.52 E-value=7.3e+02 Score=28.70 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=63.7
Q ss_pred HHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhh
Q 000049 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554 (2629)
Q Consensus 2475 ~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~ 2554 (2629)
+.+..-+.|+++..|..|..++..+.... ..+..++..+-..+.|++.-||.+...+|+.+++..|+.+.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--------TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 56777788999999999988877665541 2466777777777888999999999999999999999999888
Q ss_pred HHHHHHH
Q 000049 2555 VALFGPA 2561 (2629)
Q Consensus 2555 l~~l~p~ 2561 (2629)
+......
T Consensus 180 l~~~~~~ 186 (197)
T cd06561 180 LEKNGLS 186 (197)
T ss_pred HHHHHHh
Confidence 7665444
No 325
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=33.42 E-value=3.8e+02 Score=33.77 Aligned_cols=105 Identities=11% Similarity=0.165 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhh--HHHHHHHHHHHhc-CCChhHH
Q 000049 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE--APNMISTLIVLLS-DSDSTTV 2170 (2629)
Q Consensus 2094 a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~--~~~il~~Ll~ll~-d~d~~V~ 2170 (2629)
...+|+.+-. +.++-...|..+++++++.|+.|...|+.+++.+..+++..+... -.++...|..++. .....|+
T Consensus 29 IlDvCD~v~~--~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~ 106 (462)
T KOG2199|consen 29 ILDVCDKVGS--DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVC 106 (462)
T ss_pred HHHHHHhhcC--CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHH
Confidence 3445555432 236678899999999999999999999999999988887544322 2344555555555 5567787
Q ss_pred HHHHHHHHHHHhhcCcccccchHHHHHHHH
Q 000049 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2629)
Q Consensus 2171 ~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l 2200 (2629)
+.....+........++---.++..+..-+
T Consensus 107 ~k~~~lv~eWsee~K~Dp~lsLi~~l~~kl 136 (462)
T KOG2199|consen 107 EKMRDLVKEWSEEFKKDPSLSLISALYKKL 136 (462)
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 777666666666555544344555544444
No 326
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=32.58 E-value=2e+02 Score=30.50 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=53.4
Q ss_pred hhHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCCcchhhhhHHHHHHHHhccc
Q 000049 2513 VVVDILASVVSALH-DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2629)
Q Consensus 2513 ~l~~~l~~l~~~l~-~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 2588 (2629)
.+..++|.+..++. +...|.|-.++..+..++.+-|-. .+.+..++..+.+....... ...+--|+..+++-.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 45678888899988 889999999999999999876532 44556666666655443333 456777888888776
No 327
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=32.39 E-value=9.8e+02 Score=31.66 Aligned_cols=225 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHhchhhhhhhHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHhhcCc--ccccchHHHHHHHHhhhhhhh
Q 000049 2137 GYFYKNSKLYLVDEAPNMISTLIVLLS-------DSDSTTVAAAWEALSRVVASVPK--EVQPSYIKVIRDAISTSRDKE 2207 (2629)
Q Consensus 2137 ~~l~~~~~~~~~~~~~~il~~Ll~ll~-------d~d~~V~~~a~~aL~~l~~~~~~--~~l~~l~~~l~~~l~~~~~~~ 2207 (2629)
|.++.....|+.+-+.+.+..+-..+. ..|..|++-+..-+...++.... .|...++..++.++...-...
T Consensus 18 gdLFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~ 97 (851)
T KOG3723|consen 18 GDLFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPF 97 (851)
T ss_pred cccccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccC
Q ss_pred hhhhcCCc----------ccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2208 RRKKKGGP----------ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2208 ~~~~~~~~----------~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
.......+ ...-...-+..+..-+|.-.+.|..+.++.-..-..-+.--+-..- +-+.++...+ +-
T Consensus 98 g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~a-dLL~~hTEv~---~~ 173 (851)
T KOG3723|consen 98 GKKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKA-DLLADHTEVI---VK 173 (851)
T ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhh-hhccCchHHH---HH
Q ss_pred HHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC--ChhHHHHHHH
Q 000049 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST--RVDPLVGDLL 2355 (2629)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~--~~~~ll~~Ll 2355 (2629)
.+|... ...|..++.+.+.-|..+.||+|.+...+.++ +....++..-+--|+.-.. .+..++|.|.
T Consensus 174 siLSgn------~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~-----~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~ 242 (851)
T KOG3723|consen 174 SILSGN------TMLLRVLSAVYEKQPQPINPHLPELLALLSQL-----EPEQYHLLRLLHVLIKQKQLEVLQKCIPFLI 242 (851)
T ss_pred HHhccc------hHHHHHHHHHHhcCCCccCcccHHHHHHhcCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q ss_pred HhhhcCC-HHHHHHHHHHHHHH
Q 000049 2356 SSLQVSD-AGIREAILTALKGV 2376 (2629)
Q Consensus 2356 ~~l~~~d-~~vr~~~l~AL~~v 2376 (2629)
..+++.+ ..++..++.-+..+
T Consensus 243 g~l~ds~~~~i~~~Ilk~ia~~ 264 (851)
T KOG3723|consen 243 GHLKDSTHNDIILNILKEIAVY 264 (851)
T ss_pred HHhccccchhHHHHHHHHHHhc
No 328
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=32.07 E-value=1.2e+03 Score=30.10 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=123.5
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHhhcH-
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFS-D-QVVAVREAAECAARAMMSQLSA- 1453 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~-D-~~~~VR~aa~~al~~i~~~l~~- 1453 (2629)
..++.+..++-++ +..+|.+|..++.++...... +.-+.. ++--.+...+. | .+..=|+.|..-++.+++.-.+
T Consensus 25 ~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 25 FFGERIQCMLLSD-SKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 3444555444444 488999999888887754321 111111 11112233332 2 3556788888888888775221
Q ss_pred HhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1454 QGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1454 ~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
..+ ..++-.++.-.++.+-+.|..+++.|..++...|+.+.. .+-+..+.+.+.|....+.+..+.++-.+...-..
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~--~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAE--CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH--cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcch
Confidence 111 445555566666677789999999999999988887644 33456677777776555666666666555543221
Q ss_pred h-------hHHhHHHHHHhc----cCCCC--hhHHH---HHHHHHhccccccC--ChhhhhhHHHHHHHhhcCCCHHHHH
Q 000049 1533 P-------EIASLVPTLLMG----LTDPN--DHTKY---SLDILLQTTFVNTV--DAPSLALLVPIVHRGLRERSAETKK 1594 (2629)
Q Consensus 1533 ~-------~i~~lvp~Ll~~----l~d~~--~~~r~---al~~L~~~~~~~~~--~~~~l~~i~p~L~~~L~d~~~~vr~ 1594 (2629)
. +++.++..+.+. ..+.. +..+. ++-.+.++ +.+-+ ..+.. .-+..+...+.-++.++|.
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-W~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-WPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-CCceeeeecCCc-hHHHHHHHHHcCCCHHHHH
Confidence 1 223344444443 11111 12222 23233221 11100 00111 2345566677778889999
Q ss_pred HHHHHHHHHhhh
Q 000049 1595 KAAQIVGNMCSL 1606 (2629)
Q Consensus 1595 ~a~~~l~~l~~~ 1606 (2629)
...+++-.+...
T Consensus 259 ~Ildll~dllri 270 (371)
T PF14664_consen 259 AILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHCC
Confidence 999988887764
No 329
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=32.03 E-value=11 Score=46.60 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000049 842 RELLLNEEASIREKVQGV 859 (2629)
Q Consensus 842 ~~~qL~kE~~iR~~v~~~ 859 (2629)
++++++||.++|.+.|+.
T Consensus 561 ~qkr~kkEkk~k~k~qe~ 578 (641)
T KOG3915|consen 561 VQKRLKKEKKAKRKLQEA 578 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466788888888887754
No 330
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=31.75 E-value=1.5e+03 Score=31.05 Aligned_cols=438 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCchh--hhhhccchHHHHhhhhcCCCH------------HHHHHHHHHHHHHhhhcCchhHHhHHHHHHh
Q 000049 1479 VQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHP------------KVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2629)
Q Consensus 1479 ~~~L~~la~~~p~~--l~~~L~~ivp~L~~~L~D~~~------------~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~ 1544 (2629)
|.+|..+....|.. -......+....++-++..++ .+-....+.||.+.+.-=..--+.++..|-+
T Consensus 13 CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~ 92 (552)
T PF14222_consen 13 CRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEK 92 (552)
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHH
Q ss_pred ccCCCChhHHHHHHHHHh------ccccccCChhhhhhHHHHHHHhhcCC--CHHHHHHHHHHHHHHhhhcCCC------
Q 000049 1545 GLTDPNDHTKYSLDILLQ------TTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQIVGNMCSLVTEP------ 1610 (2629)
Q Consensus 1545 ~l~d~~~~~r~al~~L~~------~~~~~~~~~~~l~~i~p~L~~~L~d~--~~~vr~~a~~~l~~l~~~~~~~------ 1610 (2629)
...+.+ ..+.-+..++. .+..+...-......+..+.+.+.+. +.++|.+-|+.+..+..=+...
T Consensus 93 ~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn 171 (552)
T PF14222_consen 93 LRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVN 171 (552)
T ss_pred hcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhccccccc
Q ss_pred -CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----Cch-hhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000049 1611 -KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFP-DLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2629)
Q Consensus 1611 -~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~-~ll~~Ll~~L~~~~~~~~R~~a~~~L~~ 1684 (2629)
......++.+.+...+.+.. +.--..++-....+....+++ .+. .++..+...+++. ..|..+.+++..
T Consensus 172 ~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~R 246 (552)
T PF14222_consen 172 HPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSR 246 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHH
Q ss_pred HHHhhC-hh----------HHHhHhHHHHHhhcCCChhhHH-HHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCC-
Q 000049 1685 VLAALG-TV----------YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN- 1750 (2629)
Q Consensus 1685 i~~~~g-~~----------~l~~llp~l~~~l~~~~~~vR~-~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~- 1750 (2629)
++=.+= .. .++.++..++ --....+-.++ ..+..+..+....|...-.|. +.++-.+++.-....
T Consensus 247 LlWvYL~~r~~Es~n~T~krL~~i~~~lf-p~~kk~~i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~ 325 (552)
T PF14222_consen 247 LLWVYLVYRCPESLNNTTKRLDSIFKLLF-PKGKKGWIPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSS 325 (552)
T ss_pred HHHHHHhcccCCCchHHHHHHHHHHHHHc-cCCCCcccCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHcccccccc
Q ss_pred -----hhHHHHHHHHHHHHHHHhhhchhhhHHH---------------------HHhhccCCCchHHHHHHHHHHHHHHH
Q 000049 1751 -----ESVRDAALGAGHVLVEHYATTSLPLLLP---------------------AVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1751 -----~~VR~~al~al~~iv~~~~~~~i~~llp---------------------~l~~~l~d~~~~vR~sa~~ll~~ll~ 1804 (2629)
++--.-+++|.-.++..+....-+...| .............-......++.++
T Consensus 326 ~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il- 404 (552)
T PF14222_consen 326 LENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKIL- 404 (552)
T ss_pred ccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHH-
Q ss_pred hhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh-----------hccCccHHHHHHHHHHHHHHHh
Q 000049 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-----------VRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1805 ~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~-----------~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
..+....|......--..... ...|....- +..++.+..++.
T Consensus 405 --------------------------~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~-~~~~~Lf~t~i~ 457 (552)
T PF14222_consen 405 --------------------------RLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQ-KPQLDLFRTCIQ 457 (552)
T ss_pred --------------------------HHHHHHhchhhccCcccccCCCCCCcccccccccccccccc-cchhHHHHHHHH
Q ss_pred cChhhHhhhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-ccc-hhhhHHHHHhhhcCCCChhH----------
Q 000049 1874 NTPKTLKEIMP--VLMNTLISSLASSSSERRQVAGRALGELVRKL-GER-VLPSIIPILSRGLKDPSASR---------- 1939 (2629)
Q Consensus 1874 ~~~~~l~~~l~--~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~-~~~-~l~~llp~L~~~L~d~~~~v---------- 1939 (2629)
.-|+.+...++ .++..|.....+.++.+|..|..+|..+++.. ... ++..+...+.+ +.|..+..
T Consensus 458 aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~~~~~~~l~~~~ 536 (552)
T PF14222_consen 458 AIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPSMYDGGYLGSGE 536 (552)
T ss_pred HccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCccchhhhccchHH
Q ss_pred HHHHHHHHHHHHH
Q 000049 1940 RQGVCIGLSEVMA 1952 (2629)
Q Consensus 1940 R~~a~~aL~~li~ 1952 (2629)
-...+.-..+++.
T Consensus 537 ~~~~L~lyveLL~ 549 (552)
T PF14222_consen 537 IESLLKLYVELLE 549 (552)
T ss_pred HHHHHHHHHHHHH
No 331
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.61 E-value=4.7e+02 Score=33.08 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=46.8
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMM 1448 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~ 1448 (2629)
+.+.+|.+-+.++ |+++..-|+..++.++..||+.|.--+. .+..-+...+. ..++.|++.....+....
T Consensus 45 d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 45 DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 5677788888776 8999999999999999999976644332 33444444444 445667766544444433
No 332
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=31.13 E-value=8.7e+02 Score=28.01 Aligned_cols=91 Identities=18% Similarity=0.077 Sum_probs=57.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 000049 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2629)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~ 1427 (2629)
..++|..-...+..+..-... .....+.+.+.+.+++.|..|-+.+..+..+.. ..+...++..+-.
T Consensus 82 ~~~~W~~~D~~~~~~~~~~~~-------~~~~~~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~ 148 (197)
T cd06561 82 YIDNWDLVDSLCANLLGKLLY-------AEPELDLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIER 148 (197)
T ss_pred CCchHHHHHHHHHHHHHHHHh-------cCcchHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHH
Confidence 445677666554443222211 111126777888887667666544443333322 2456678888888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1428 AFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
...|++..||.+...+++.+....
T Consensus 149 ~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 149 LLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhhC
Confidence 889999999999999988887663
No 333
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=2e+03 Score=31.44 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchH-----HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCChh-----HHHHHHHH
Q 000049 2288 VKSAILSTLSIIIRKGGIALKPFLP-----QLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVD-----PLVGDLLS 2356 (2629)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~lp-----~L~~~~~k~L~d-~~~~vR~~Aa~aLg~l~~~~~~~~-----~ll~~Ll~ 2356 (2629)
....+|.+|..++.+.|....-|-. ...+.|...+.. .+..+...|...+..+...++-+. ..+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3456788888888766521111100 112222223322 245666677766666544332222 23445555
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhcCCCcChH-HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhc--CChh---HHHHH
Q 000049 2357 SLQVSDAGIREAILTALKGVLKHAGKSVSSA-VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC--MEDG---QLADL 2430 (2629)
Q Consensus 2357 ~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~-~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~--~~~~---~~~~~ 2430 (2629)
.+.+ -+..|+.+++.|..+.+.. .-..+. -...+..++.-.+....+..|..+|+++|++... .++. .+..|
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 5543 5788999998887765421 100011 1122334444456677899999999999998632 2222 24456
Q ss_pred HHHH
Q 000049 2431 LQEL 2434 (2629)
Q Consensus 2431 l~~l 2434 (2629)
+++.
T Consensus 1899 LP~~ 1902 (2235)
T KOG1789|consen 1899 LPEI 1902 (2235)
T ss_pred chHH
Confidence 6654
No 334
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=28.08 E-value=4e+02 Score=30.98 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000049 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2269 v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2629)
+.++++.+++...++ -+.+|..|..++..+..
T Consensus 5 ~~~~~~~llrqa~EK-iDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEK-IDRVREVAGKCLQRLLH 36 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 445566667776666 57799999999999983
No 335
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=28.00 E-value=74 Score=31.76 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~ 1448 (2629)
-..|++++++++.+....+-.+.++++.++..|-....| ...|+..+-.++..+-
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 357999999999999988877888999999998888776 4567777766666653
No 336
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.96 E-value=1.1e+02 Score=33.54 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=30.8
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000049 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174 (2629)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~ 1174 (2629)
..++..|.+++..+++.|.+|+..+...+-....+.+.+|.+
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lld 61 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcC
Confidence 556789999999999999999988754433344555555553
No 337
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=27.89 E-value=2.7e+02 Score=27.63 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=49.7
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 000049 2111 ESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2629)
Q Consensus 2111 ~~ll~~Ll~~l-~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~ 2178 (2629)
..++..+...+ ...+..+|...+.|+..+....+..+..-.+.++..+-....|.++.+...|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34455554443 345678899999999998887776666666777777777778888888888887764
No 338
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.96 E-value=8.7e+02 Score=26.66 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHH-HHHHhcC---CChhHHHHHHHHHH
Q 000049 2106 DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLSD---SDSTTVAAAWEALS 2178 (2629)
Q Consensus 2106 ~~~~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~-Ll~ll~d---~d~~V~~~a~~aL~ 2178 (2629)
...+....+..|.+++. +.++.+...|+.++..+.++.|..+-..+ .+++.. |..++.+ .+..|+....+.+.
T Consensus 32 ~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 32 TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 34567888888999887 46899999999999999999886665332 355665 6666652 34578888877777
Q ss_pred HHHhhcCc
Q 000049 2179 RVVASVPK 2186 (2629)
Q Consensus 2179 ~l~~~~~~ 2186 (2629)
........
T Consensus 112 ~W~~~f~~ 119 (141)
T cd03565 112 AWADAFRG 119 (141)
T ss_pred HHHHHhCC
Confidence 77665543
No 339
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.54 E-value=1.8e+03 Score=30.06 Aligned_cols=259 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred hChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000049 1689 LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2629)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~ 1768 (2629)
++...+..++..+.....++-.-+|.++-.++..+-..+-..-...-+.=-.+.-..+.+.++.+ +...+..+
T Consensus 203 ~nss~~ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~~lsEKksR~ne~~l~~ln~sl-------~~d~i~di 275 (740)
T COG5537 203 FNSSCYLDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAFSLSEKKSRMNELALYDLNPSL-------IRDEIKDI 275 (740)
T ss_pred ecchHHHHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchH-------HHHHHHHH
Q ss_pred hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHH
Q 000049 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2629)
Q Consensus 1769 ~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~ 1848 (2629)
-.. .+..+..|....+|..|+..++......+ ..+....+..+..
T Consensus 276 cds-------vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP-----------------------~yf~k~~~lry~G----- 320 (740)
T COG5537 276 CDS-------VFVSRYIDVDDVIRVLCSMSLRDWIGLVP-----------------------DYFRKILGLRYNG----- 320 (740)
T ss_pred HHH-------HHhhhccchhHHHHHHHHHHHHHHHhcch-----------------------HHHHhhhcccccc-----
Q ss_pred HHhhccCccHHHHHHHHHHHHHHHhcCh--hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 000049 1849 LYMVRSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2629)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~l~~~~~--~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp 1926 (2629)
-.++|.+..||.....++..++...| +.++.++..+...+++.+.-...-+|..+.+.+..+-.. +-.-..-+-
T Consensus 321 --W~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l--g~L~~SeIl 396 (740)
T COG5537 321 --WSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRIL--GVLSSSEIL 396 (740)
T ss_pred --cccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh--cccchhHHH
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI--PTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll--~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
++..++-|..|+-|......+..+ .....+.+.+-.+... ..++.++.+.....+...-..|.++..
T Consensus 397 IvsscmlDi~pd~r~~~~E~v~~i-cK~~aevikEKipl~~k~n~lL~a~~qgse~~f~v~~~iFsr~~~ 465 (740)
T COG5537 397 IVSSCMLDIIPDSRENIVESVESI-CKIDAEVIKEKIPLATKTNRLLEAMKQGSERYFVVCEEIFSRFVH 465 (740)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHH-HHHHHHHHHhhcchhhhhhhHHHHHHhhhhccchhHHHHHHHHHH
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.04 E-value=5.9e+02 Score=26.66 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHH--HHHHHHHH----h--cCCChhHHHHHHHHHH
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN--MISTLIVL----L--SDSDSTTVAAAWEALS 2178 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~--il~~Ll~l----l--~d~d~~V~~~a~~aL~ 2178 (2629)
..+...++..|.+++.+.+|.+..-|+.++-.+.++.+..+..++.. .+..++.. . .+.+..||+.+...+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 45678899999999999999999999999999999988776655422 22223221 1 1346677877766554
Q ss_pred H
Q 000049 2179 R 2179 (2629)
Q Consensus 2179 ~ 2179 (2629)
.
T Consensus 112 ~ 112 (115)
T cd00197 112 L 112 (115)
T ss_pred H
Confidence 4
No 341
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=25.76 E-value=2.5e+02 Score=28.88 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhhCchhhh--hhccchHHHHhhhh--cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHh
Q 000049 1475 KQSSVQLLGAMAYCAPQQLS--QCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~--~~L~~ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~ 1544 (2629)
|...+.+++.+++..+.... ..+.. +|.++..+ .|.+|-+|+-|..|+..+++. +++-+.++..|-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~--n~eNQ~~I~~L~~ 73 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEG--NPENQEFIAQLEP 73 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhC--CHHHHHHHHhccc
Confidence 55667888999987665321 22344 66666654 467999999999999999864 5666666655543
No 342
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.33 E-value=1e+03 Score=28.48 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v 1456 (2629)
+.++|.....++...--|..++-.++.+.+.-......|+. +++|.+++.+...+..-+..|...++.++..=.+-.+
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~Y 204 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYY 204 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHH
Q ss_pred HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC-----
Q 000049 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK----- 1531 (2629)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~----- 1531 (2629)
--..-.=+.... ..|+.|+...-+.....+-+-+=.+..-|.| +|+.|.+-..|+-.-...-.
T Consensus 205 iCqt~eRF~av~-----------~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l 272 (293)
T KOG3036|consen 205 ICQTAERFSAVA-----------LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALRSCLPDQLRDGTFSLLL 272 (293)
T ss_pred HHHhHHHHHHHH-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHHhhCcchhccchHHHHH
Q ss_pred --chhHHhHHHHHHhccCCC
Q 000049 1532 --NPEIASLVPTLLMGLTDP 1549 (2629)
Q Consensus 1532 --~~~i~~lvp~Ll~~l~d~ 1549 (2629)
++.-...+..|+..+...
T Consensus 273 ~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 273 KDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred hcChhHHHHHHHHHHHhccC
No 343
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=23.98 E-value=1.4e+02 Score=38.84 Aligned_cols=130 Identities=16% Similarity=0.124 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---HHhH-HhhHHHHHhhhcc
Q 000049 1397 EGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---AQGV-KLVLPSLLKGLED 1469 (2629)
Q Consensus 1397 ~~Al~al~~La~~~~---~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~---~~~v-~~ilp~Ll~~L~~ 1469 (2629)
.+++.++.+++.... ..+..| .+...+++.+.+|+..|.-.+..++...+-.++ .... +.++..++..+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~--~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDY--PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhcccc--chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 356666666665432 111111 567788888999876666555444433332222 2222 5677777777776
Q ss_pred CChhhhHHHHHHHHHHHhhCchh--hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1470 KAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1470 ~~w~~r~~a~~~L~~la~~~p~~--l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
++-..+..+.+.+..+.|.+.+. +...-.--+..++.+.+|+...|+..+.+.|.+|.-
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 66667777888888888876553 222122336788899999999999999999988864
No 344
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=23.95 E-value=2.3e+03 Score=30.57 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=56.6
Q ss_pred hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc--cccc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh
Q 000049 2069 NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2629)
Q Consensus 2069 ~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~--~~~~----~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~ 2142 (2629)
..+.+.+...+...+..++...-..+..++..+.... .... ..+..... ++.-...+......++.+...
T Consensus 436 ~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~----N~~~~~~~~~~~~il~rls~~ 511 (727)
T PF12726_consen 436 SRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQF----NKSLGQITDLISQILERLSDF 511 (727)
T ss_pred hhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHH----HHHHHHHHHHHHHHHHHHhcC
Confidence 3456666666666666666666666666665554321 1111 11111111 001112333444555555444
Q ss_pred chhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000049 2143 SKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2143 ~~~~~~~~~--~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
.+.++...+ +.....++.++=.++.++.++|.+-+......
T Consensus 512 ~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 512 DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 333333222 24555666666678888888888888877653
No 345
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=23.78 E-value=45 Score=24.92 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhh
Q 000049 1515 VQSAGQTALQQVGS 1528 (2629)
Q Consensus 1515 VR~aA~~aL~~l~~ 1528 (2629)
||.+|..+|++++.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999875
No 346
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.69 E-value=2.7e+03 Score=31.31 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHH
Q 000049 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2629)
Q Consensus 2430 ~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2629)
+++..+.+....+.....+++.+++.++...+...+ + ..+++....-.+.+++..||+.|+.-+..+=
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~--~-~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPC--P-FWELLNLVLFKLGDESSEIRSKAMQLLRALE 571 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCC--C-HHHhHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 555555555555665667788888888755443221 2 2367777777789999999999998877653
No 347
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.20 E-value=1e+02 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000049 2517 ILASVVSALHDDSSEVRRRALSALKSVA 2544 (2629)
Q Consensus 2517 ~l~~l~~~l~~~~~~vr~~al~~l~~~a 2544 (2629)
.++.++..+++++.++++.++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777889999999999999876
No 348
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=22.81 E-value=1.4e+02 Score=33.19 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000049 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIA 876 (2629)
Q Consensus 842 ~~~qL~kE~~iR~~v~~~~~~l~~~~~~i~~l~~~ 876 (2629)
.+.+++||.+||++++.+...++.....|+.+-.+
T Consensus 11 ~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~ 45 (226)
T KOG3067|consen 11 LQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQN 45 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998888887643
No 349
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=22.77 E-value=1.3e+03 Score=27.33 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=50.3
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcCC-C-CHHHHHHHHHHHhccccccCCcchHHHHHHHHHHhhC
Q 000049 12 SIAASVSTSSTKRRQRIFRHDVTSLIRNTE-M-SPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLG 79 (2629)
Q Consensus 12 ~~~~~~~~ss~~~R~~~l~~~l~~~~~~~~-~-~~~~~~~l~~~l~~T~~~Y~D~~Sr~~v~~~l~~l~~ 79 (2629)
.+...+.++-.+.|-..+ +.|...++... . ++.+...|.+-||-++=--+.+--+..+-+-|.+++.
T Consensus 4 ~~~k~LAs~d~~~R~~al-~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRAL-KSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHH-HHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 467788899999999999 89999997754 3 7899999999999887554555555555555544433
No 350
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=22.67 E-value=1.1e+03 Score=28.90 Aligned_cols=160 Identities=13% Similarity=0.181 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHhhhcCCC----Cc--ccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCC---Cc---
Q 000049 1589 SAETKKKAAQIVGNMCSLVTEP----KD--MIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE---NF--- 1655 (2629)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~----~~--l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~~g~~---~~--- 1655 (2629)
.|+.-+.+...++.++..+.-+ .. -...+..+...+...|. -.+..+-+.+..++..+++.+-.. .+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 3677777888888887543211 11 11223344444444433 345566677788888887766521 12
Q ss_pred -hhhHHHHHHHhccC-CCh--HHHHHH--HHHHHHHHHhhCh---hHHHhHhHHHHHhhcCCC--------hhhHHHHHH
Q 000049 1656 -PDLVSWLLDALKSD-NSN--VERSGA--AQGLSEVLAALGT---VYFEHILPDIIRNCSHQR--------ASVRDGYLT 1718 (2629)
Q Consensus 1656 -~~ll~~Ll~~L~~~-~~~--~~R~~a--~~~L~~i~~~~g~---~~l~~llp~l~~~l~~~~--------~~vR~~a~~ 1718 (2629)
...+..+++.+.+. ... ..|+.+ -..+..++..-.. ..+...|..+++.+..+. ..-|..++.
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 23445555666655 221 355533 2334444443332 345777777777766542 245667777
Q ss_pred HHHHhhh--hhccchHhhHHhHHHHHHhhcCC
Q 000049 1719 LFKYLPR--SLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1719 ~l~~L~~--~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
++..+.. .++....+|+++.+...+.++.+
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~s 251 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFSS 251 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 7776664 45677778888777776666654
No 351
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.54 E-value=4.2e+02 Score=28.12 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCCCCccccHHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHH-HHHHHHHHH-
Q 000049 324 ALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVK-LAILSAVAS- 401 (2629)
Q Consensus 324 ~~~~~~~~i~~~l~~~~gkl~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l-~~~l~~l~~- 401 (2629)
.+..++-.+..-|+. + ..+|.|++-|-.+..|+...+ +++++++.+...+.+-.++... ...+-++..
T Consensus 3 ~l~~lLP~l~~~L~~--s--~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l 72 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKS--S--SSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVL 72 (121)
T ss_pred HHHHHHHHHHHHHcc--C--CcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 344555556666764 2 445999999999999987663 4555555555544443333333 445555554
Q ss_pred HHhh-cCCcccHHHHHHHHh
Q 000049 402 WAKR-SADIIQSDLLSFFAS 420 (2629)
Q Consensus 402 ~~~~-~~~~~~~~~~~~~~k 420 (2629)
|-.+ ....+|+.+++.|.+
T Consensus 73 ~q~q~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 73 CQSQENVDSLPRKVFKALLK 92 (121)
T ss_pred HHcccccccCCHHHHHHHHc
Confidence 5444 445667777766554
No 352
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.35 E-value=4.1e+02 Score=29.77 Aligned_cols=104 Identities=9% Similarity=0.089 Sum_probs=68.6
Q ss_pred hhhhhHHHHHHHHHHhcCCCCChhhHhhhhhhhcc--cChhhhhhhcchhhHHhhhcChhHHHHHHHHhhhcCCCChHHH
Q 000049 208 KCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTH--MSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKY 285 (2629)
Q Consensus 208 ~~K~~~~~~y~k~vl~sK~~p~~~~~~~~~~f~~~--~t~~df~~~ilP~~eKalLRsPE~~l~~~~~l~~~~~~dls~~ 285 (2629)
...+.|++--.+.+++.+..|..+..+.+...... ++-.|..+.|-..++-...-.++++...+..+.+=.++. -++
T Consensus 51 ~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s-~~l 129 (158)
T PF14676_consen 51 MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS-PSL 129 (158)
T ss_dssp GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-HHH
Confidence 34567888888889999998888889999999885 566678888888888888888888777666555433322 112
Q ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHH
Q 000049 286 ATEILSVVLSQVRHADEGRKTGALTII 312 (2629)
Q Consensus 286 ~~~l~~~~~s~lkS~~~~~R~~a~~~~ 312 (2629)
-..++..+=..+.|.+...|.-|+.-|
T Consensus 130 rd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 130 RDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 233566666677788888888888754
No 353
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.00 E-value=1.1e+03 Score=26.49 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHHHhccCch------hHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHh
Q 000049 1392 SAKRREGALLAFECLCEKLGRLFE------PYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~~~~~~------~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ 1458 (2629)
+...|.-++..+..+.+..|..|. ++. ..+.+.+++.+..+++.+=..+...+..+...+..+ ..+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888776555 222 257888888876666777777777777777665544 3456
Q ss_pred hHHHHHh-hhccCC--hhhhHHHHHHHHHHHh
Q 000049 1459 VLPSLLK-GLEDKA--WRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1459 ilp~Ll~-~L~~~~--w~~r~~a~~~L~~la~ 1487 (2629)
+++.++. .++++. ...|..+++.+..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666665 344333 3477888888888775
No 354
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.73 E-value=1.5e+03 Score=27.26 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=78.3
Q ss_pred HHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCC------------------CCc---------hhhHHHHHHHHhhcC
Q 000049 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP------------------ANT---------TVVVDILASVVSALH 2526 (2629)
Q Consensus 2474 ~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~------------------~~~---------~~l~~~l~~l~~~l~ 2526 (2629)
-..+.+.+.++++.+|-+++.-+-.++..+.+... .++ ..-..++..++..+.
T Consensus 45 K~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~ 124 (239)
T PF11935_consen 45 KDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQ 124 (239)
T ss_dssp HHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666777777766666555432211 111 112346677777766
Q ss_pred CCC--HHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcCC------------cchhhhhHHHHHHHHhccccCch
Q 000049 2527 DDS--SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDG------------STPVRLAAERCAVHAFQLTRGSE 2592 (2629)
Q Consensus 2527 ~~~--~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~------------~~~vk~aae~a~~~l~~~~~~~~ 2592 (2629)
++. ..+=.+++.++..++++.|... +.++|.+.+---.. .-.|+...-..+.++++-....+
T Consensus 125 ~~~i~~~~~~a~insL~~Iak~RP~~~----~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~~ 200 (239)
T PF11935_consen 125 SPHISSPLLTAIINSLSNIAKQRPQFM----SRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASSP 200 (239)
T ss_dssp -TT--HHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGGG
T ss_pred hcccchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCchh
Confidence 554 6676788999999999988753 34444444332211 12245666678899999887767
Q ss_pred hHHHHHHHhh--hhhhhhhccC
Q 000049 2593 YIQGAQKFIT--GLDARRLSKF 2612 (2629)
Q Consensus 2593 ~~~~~~~~l~--~~~~~~l~~~ 2612 (2629)
....+...++ |-..+.....
T Consensus 201 ~~~~i~~~L~~lg~~~~e~~~~ 222 (239)
T PF11935_consen 201 FQGRITQALTDLGASQREIADE 222 (239)
T ss_dssp GHHHHHHHHHHTT--HHHHHHT
T ss_pred hHHHHHHHHHHHccCHHHHHHH
Confidence 7778888886 4444444333
No 355
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.33 E-value=8.7e+02 Score=28.20 Aligned_cols=109 Identities=18% Similarity=0.108 Sum_probs=65.9
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHhchhhh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQA--SIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~~~~ll~~Ll~~l~d~~~--~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
...++..+++...+.=+.+|..|..++..+...... .+++ -.+.|...+..+.. ..-..+...+..++.- .++
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~L--L~~ 81 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKL--LDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHH--hcc
Confidence 445555555555555678999999999888743322 1221 12333333322111 0112223333434322 234
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
..|...++..++...+...+.+...+..||...+..
T Consensus 82 ~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 82 PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999874
No 356
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.25 E-value=5.8e+02 Score=28.83 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=51.3
Q ss_pred hhHHHHHHHhccCCCh-HHHHHHHHHHHHHHHhh---ChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhh-hhhccch
Q 000049 1657 DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAAL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP-RSLGVQF 1731 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~-~~R~~a~~~L~~i~~~~---g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~-~~~g~~f 1731 (2629)
++-|.|+.+|+..... ..-....+.++.++..+ ..+.+.++..-+.... .+.. +.|+..|..|+ ...|+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~--~~e~--~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS--ENEP--VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh--ccch--HHHHHHHHhCCchhhhhHH
Confidence 3456666666654321 11111222233333222 3334455544444332 1122 45788899998 6677778
Q ss_pred HhhHHhHHHHHHhhcCCCC
Q 000049 1732 QNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~ 1750 (2629)
.|+++.+.|.+.+.|.++.
T Consensus 79 ~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHHHHHHHcCCch
Confidence 8999999999999998764
No 357
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.22 E-value=4.2e+02 Score=29.99 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=69.3
Q ss_pred hhhcChhHHHHHHHHhhhcCC-----C----ChHHHH-HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCH--HHHH
Q 000049 259 MLKRNPEIILESIGILLKSVN-----L----DLSKYA-TEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP--DALE 326 (2629)
Q Consensus 259 alLRsPE~~l~~~~~l~~~~~-----~----dls~~~-~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~~~d~--~~~~ 326 (2629)
.--|+.-.+|+.+..++.+.. . .+-... .++.+.++.++.+.+..+=..+++.|..+..+-... .-++
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666664432 1 133333 669999999999888888888999999988865322 2445
Q ss_pred HHHHHHHH-hcCCCCCccccHHHHhHHHHHHHhhhcCC
Q 000049 327 AMFYAIKA-VIGGSEGRLAFPYQRIGMVNALQELSNAT 363 (2629)
Q Consensus 327 ~~~~~i~~-~l~~~~gkl~~~~~R~~~~~~l~~l~~~~ 363 (2629)
-++.++.- ++..+. ++..||..+++++..+...|
T Consensus 114 ~~l~~i~~~il~~~~---~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 114 VFLSHIILRILESDN---SSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHhCh
Confidence 66777777 554433 36679999999999887655
No 358
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=20.09 E-value=5.6e+02 Score=28.58 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC
Q 000049 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1712 vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
-+.....++..+...++.-|.||...+++.....|..
T Consensus 83 R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 83 RLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888889999999888887766653
No 359
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.07 E-value=5.2e+02 Score=30.03 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=57.2
Q ss_pred hHHhhhcChhHHHHHHHHhhhcCCCChHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHH
Q 000049 256 SIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEK----SSNPDALEAMFYA 331 (2629)
Q Consensus 256 ~eKalLRsPE~~l~~~~~l~~~~~~dls~~~~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~----~~d~~~~~~~~~~ 331 (2629)
+.|.+++.+=.++....++-...+=+...+..+....+++.+|+..+.++. .-+.++.++.+ --|.+-..+
T Consensus 3 m~k~l~~~~ll~~a~a~~~~~~~~~~~~~~v~~~a~~~ls~lk~~~~~~k~-dp~~l~~~v~~~l~p~vd~~~~a~---- 77 (202)
T COG2854 3 MKKSLTILALLVIAFASSLAAAAPANPYSLVQEAADKVLSILKNNQAKIKQ-DPQYLRQIVDQELLPYVDFKYAAK---- 77 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHhccchhhcc-CHHHHHHHHHHHhhhhhcHHHHHH----
Confidence 356666655444433333334446677777888999999999999765554 22223333332 112222212
Q ss_pred HHHhcCCCCCccccHHHHhHHHHHHHhh
Q 000049 332 IKAVIGGSEGRLAFPYQRIGMVNALQEL 359 (2629)
Q Consensus 332 i~~~l~~~~gkl~~~~~R~~~~~~l~~l 359 (2629)
-+|+ ++=|.++|+||-....+.+..
T Consensus 78 --~vLG-k~~k~aspeQ~~~F~~aF~~y 102 (202)
T COG2854 78 --LVLG-KYYKTASPEQRQAFFKAFRTY 102 (202)
T ss_pred --HHhc-cccccCCHHHHHHHHHHHHHH
Confidence 2343 778999999999998888543
Done!