Query 000049
Match_columns 2629
No_of_seqs 757 out of 3864
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 3.5E-48 1.2E-52 581.7 88.5 1015 1420-2615 6-1116(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 2.8E-47 9.6E-52 571.8 86.0 1074 1337-2594 6-1193(1230)
3 4fdd_A Transportin-1; heat rep 100.0 4.6E-34 1.6E-38 412.0 66.6 723 1057-1947 13-819 (852)
4 2bpt_A Importin beta-1 subunit 100.0 2.6E-33 8.9E-38 407.4 74.2 742 1132-1994 6-857 (861)
5 2bpt_A Importin beta-1 subunit 100.0 3.1E-31 1.1E-35 385.5 82.6 745 1509-2341 15-856 (861)
6 1qgr_A Protein (importin beta 100.0 9.1E-32 3.1E-36 392.0 72.8 740 1505-2344 7-873 (876)
7 4fdd_A Transportin-1; heat rep 100.0 6.5E-31 2.2E-35 379.2 80.6 722 1508-2338 22-820 (852)
8 1qgr_A Protein (importin beta 100.0 1.5E-31 5.1E-36 389.6 72.4 733 1584-2422 9-873 (876)
9 1b3u_A Protein (protein phosph 100.0 1.8E-31 6.3E-36 370.2 51.2 565 1337-1992 10-585 (588)
10 1b3u_A Protein (protein phosph 100.0 5E-29 1.7E-33 345.6 53.1 566 1501-2181 12-586 (588)
11 2iw3_A Elongation factor 3A; a 99.9 7.8E-22 2.7E-26 269.8 28.1 311 1337-1652 14-328 (986)
12 1wa5_C Importin alpha RE-expor 99.9 2.6E-18 9E-23 249.7 56.3 645 1057-1765 5-790 (960)
13 2x19_B Importin-13; nuclear tr 99.8 1.9E-16 6.6E-21 231.9 66.3 725 1057-1896 24-875 (963)
14 2x1g_F Cadmus; transport prote 99.8 1.8E-17 6.3E-22 242.3 54.4 717 1057-1915 7-859 (971)
15 1wa5_C Importin alpha RE-expor 99.8 1.1E-15 3.6E-20 222.4 63.7 711 1133-1976 8-869 (960)
16 1ibr_B P95, importin beta-1 su 99.8 2.4E-17 8.2E-22 220.7 35.4 391 1583-2012 8-460 (462)
17 2x19_B Importin-13; nuclear tr 99.8 9.6E-14 3.3E-18 203.3 72.1 746 1575-2423 24-897 (963)
18 1ibr_B P95, importin beta-1 su 99.8 6E-17 2.1E-21 216.8 34.2 395 1132-1546 3-460 (462)
19 3m1i_C Exportin-1; heat repeat 99.8 6.4E-15 2.2E-19 215.9 54.2 752 1049-1954 8-880 (1049)
20 3now_A UNC-45 protein, SD10334 99.7 8E-14 2.7E-18 189.4 55.6 675 1708-2504 20-785 (810)
21 2x1g_F Cadmus; transport prote 99.7 8.6E-14 2.9E-18 203.5 57.1 694 1588-2421 19-859 (971)
22 3now_A UNC-45 protein, SD10334 99.7 5.4E-13 1.8E-17 181.3 56.3 671 1417-2182 7-782 (810)
23 2vgl_B AP-2 complex subunit be 99.7 2.8E-14 9.6E-19 195.2 43.4 469 1382-1948 53-528 (591)
24 4hat_C Exportin-1; heat repeat 99.7 8.5E-13 2.9E-17 187.8 59.7 782 1047-1977 6-911 (1023)
25 3ibv_A Exportin-T; karyopherin 99.7 1.9E-12 6.3E-17 184.6 63.3 739 1056-1936 5-900 (980)
26 2vgl_B AP-2 complex subunit be 99.7 1.3E-13 4.4E-18 188.6 42.9 501 1223-1762 20-528 (591)
27 3m1i_C Exportin-1; heat repeat 99.6 1.3E-11 4.4E-16 181.0 62.8 695 1588-2342 28-878 (1049)
28 2jdq_A Importin alpha-1 subuni 99.6 1.5E-13 5.1E-18 183.1 33.8 393 1501-1993 22-442 (450)
29 3ibv_A Exportin-T; karyopherin 99.6 1.4E-10 5E-15 165.2 66.2 817 1576-2561 7-941 (980)
30 2jdq_A Importin alpha-1 subuni 99.6 1.4E-13 4.6E-18 183.5 31.8 350 1339-1727 22-392 (450)
31 3gjx_A Exportin-1; transport, 99.6 6.3E-11 2.2E-15 167.1 59.9 761 1047-1953 18-905 (1073)
32 2z6g_A B-catenin; FULL-length, 99.6 1.4E-12 4.8E-17 183.6 41.0 506 1421-1997 116-666 (780)
33 1wa5_B Importin alpha subunit; 99.6 7E-13 2.4E-17 180.1 33.0 383 1418-1803 85-509 (530)
34 4b8j_A Importin subunit alpha- 99.6 1.5E-12 5.2E-17 176.8 36.4 387 1338-1763 75-493 (528)
35 2z6g_A B-catenin; FULL-length, 99.5 3.5E-12 1.2E-16 179.5 39.7 492 1302-1803 117-662 (780)
36 4b8j_A Importin subunit alpha- 99.5 2.2E-12 7.7E-17 175.2 34.5 382 1420-1803 74-495 (528)
37 2qk1_A Protein STU2; STU2P, XM 99.5 1.8E-13 6.2E-18 163.8 20.2 195 1348-1542 26-234 (249)
38 1wa5_B Importin alpha subunit; 99.5 3.2E-12 1.1E-16 173.5 34.5 391 1575-1994 86-510 (530)
39 2z6h_A Catenin beta-1, beta-ca 99.5 1.2E-11 4E-16 171.8 40.0 461 1300-1803 14-526 (644)
40 4hat_C Exportin-1; heat repeat 99.5 1.1E-08 3.8E-13 145.7 70.7 755 1505-2403 22-911 (1023)
41 2z6h_A Catenin beta-1, beta-ca 99.5 2.8E-11 9.6E-16 168.0 42.6 471 1459-1997 15-530 (644)
42 2qk2_A LP04448P; mini spindles 99.5 3.5E-13 1.2E-17 162.3 20.5 193 1342-1539 20-216 (242)
43 1jdh_A Beta-catenin; beta-cate 99.5 1.6E-11 5.4E-16 167.2 38.0 460 1299-1802 16-528 (529)
44 1w63_A Adapter-related protein 99.5 1.4E-11 4.7E-16 169.0 37.0 480 1452-1993 64-576 (618)
45 1jdh_A Beta-catenin; beta-cate 99.5 2.7E-11 9.3E-16 164.8 38.4 465 1460-1992 19-528 (529)
46 1w63_A Adapter-related protein 99.4 1.6E-10 5.6E-15 158.3 42.5 476 1332-1873 65-577 (618)
47 3ul1_B Importin subunit alpha- 99.4 8.5E-11 2.9E-15 157.8 33.8 393 1422-1873 59-478 (510)
48 3tpo_A Importin subunit alpha- 99.4 2.6E-10 8.8E-15 154.1 35.2 395 1420-1873 76-497 (529)
49 2vgl_A Adaptor protein complex 99.3 3.7E-10 1.3E-14 153.9 36.3 479 1453-1992 69-587 (621)
50 2qk2_A LP04448P; mini spindles 99.3 5.9E-12 2E-16 151.6 16.2 199 1457-1660 14-217 (242)
51 3ul1_B Importin subunit alpha- 99.3 1.6E-10 5.5E-15 155.1 30.3 347 1341-1726 61-431 (510)
52 2vgl_A Adaptor protein complex 99.3 2.5E-09 8.6E-14 145.7 41.0 514 1898-2545 51-589 (621)
53 3tpo_A Importin subunit alpha- 99.3 4.2E-10 1.4E-14 152.0 32.4 348 1340-1726 79-450 (529)
54 2qk1_A Protein STU2; STU2P, XM 99.3 2.6E-11 8.8E-16 145.2 17.1 198 1463-1662 21-234 (249)
55 3gjx_A Exportin-1; transport, 99.2 2.6E-05 8.8E-10 110.5 73.8 420 1879-2341 411-903 (1073)
56 1oyz_A Hypothetical protein YI 99.1 1.9E-09 6.6E-14 133.0 24.4 241 1379-1671 24-266 (280)
57 4ady_A RPN2, 26S proteasome re 99.1 4E-06 1.4E-10 113.9 57.5 333 1591-1993 373-718 (963)
58 1oyz_A Hypothetical protein YI 99.1 2.9E-09 9.8E-14 131.4 23.7 251 1421-1720 24-277 (280)
59 2iw3_A Elongation factor 3A; a 99.1 3.5E-09 1.2E-13 145.7 24.8 286 1674-1998 30-328 (986)
60 4ady_A RPN2, 26S proteasome re 99.1 1.3E-05 4.3E-10 109.1 57.4 261 1590-1910 451-715 (963)
61 3a6p_A Exportin-5; exportin-5, 99.1 3.3E-07 1.1E-11 134.6 45.0 533 1057-1668 11-682 (1204)
62 3ltj_A Alpharep-4; protein eng 99.0 1.5E-08 5E-13 118.1 19.8 189 1414-1647 8-197 (201)
63 3opb_A SWI5-dependent HO expre 98.9 3.9E-06 1.3E-10 111.9 44.0 477 1121-1649 160-729 (778)
64 3ltm_A Alpha-REP4; protein eng 98.9 2.3E-08 7.8E-13 117.4 19.9 186 1420-1650 19-205 (211)
65 4gmo_A Putative uncharacterize 98.9 7E-09 2.4E-13 143.4 15.0 219 1922-2151 34-269 (684)
66 3opb_A SWI5-dependent HO expre 98.8 4.1E-05 1.4E-09 102.2 48.3 553 1378-1994 132-728 (778)
67 1xm9_A Plakophilin 1; armadill 98.8 2.7E-07 9.2E-12 121.7 25.7 337 1459-1802 3-447 (457)
68 3ltm_A Alpha-REP4; protein eng 98.8 1E-07 3.5E-12 111.8 18.8 185 1378-1606 19-204 (211)
69 2db0_A 253AA long hypothetical 98.8 4.6E-07 1.6E-11 94.8 20.5 215 2111-2378 31-246 (253)
70 4hxt_A De novo protein OR329; 98.8 1.6E-07 5.4E-12 113.6 20.4 237 1379-1653 3-246 (252)
71 3ltj_A Alpharep-4; protein eng 98.8 1.4E-07 4.8E-12 109.7 19.0 184 1378-1605 14-198 (201)
72 4db8_A Armadillo-repeat protei 98.7 9.6E-08 3.3E-12 115.6 16.8 224 1422-1648 14-251 (252)
73 3l6x_A Catenin delta-1; cateni 98.7 3E-06 1E-10 111.9 30.8 346 1299-1648 47-476 (584)
74 1xm9_A Plakophilin 1; armadill 98.7 1.5E-06 5E-11 114.6 28.1 342 1380-1724 4-448 (457)
75 4hxt_A De novo protein OR329; 98.7 4.4E-07 1.5E-11 109.6 21.2 230 1301-1532 3-245 (252)
76 3l6x_A Catenin delta-1; cateni 98.7 2.4E-06 8.3E-11 112.8 28.7 342 1460-1803 50-475 (584)
77 4db8_A Armadillo-repeat protei 98.7 1.2E-07 4E-12 114.8 15.0 227 1300-1528 12-251 (252)
78 1vsy_5 Proteasome activator BL 98.7 2.5E-06 8.4E-11 120.0 29.7 770 1412-2302 125-967 (997)
79 1vsy_5 Proteasome activator BL 98.7 1.5E-05 5.3E-10 112.0 37.4 423 2069-2502 462-967 (997)
80 3oc3_A Helicase MOT1, MOT1; re 98.6 1.1E-07 3.6E-12 116.4 13.1 252 1338-1644 175-432 (800)
81 3a6p_A Exportin-5; exportin-5, 98.6 0.0003 1E-08 103.4 50.3 141 1854-1998 542-701 (1204)
82 3nmz_A APC variant protein; pr 98.5 7.7E-06 2.6E-10 105.7 27.4 339 1460-1804 34-450 (458)
83 4ffb_C Protein STU2; tubulin f 98.5 1.1E-06 3.7E-11 107.8 17.9 195 1780-1999 14-217 (278)
84 3nmz_A APC variant protein; pr 98.5 6E-06 2E-10 106.7 25.5 315 1377-1729 69-454 (458)
85 3oc3_A Helicase MOT1, MOT1; re 98.5 1E-06 3.4E-11 108.1 15.7 211 1301-1527 175-403 (800)
86 4db6_A Armadillo repeat protei 98.5 1.3E-06 4.3E-11 102.3 16.0 192 1420-1648 12-209 (210)
87 2of3_A ZYG-9; multifunctional 98.5 7E-06 2.4E-10 96.4 21.9 179 1343-1533 52-241 (266)
88 4db6_A Armadillo repeat protei 98.5 1.6E-06 5.6E-11 101.4 16.6 186 1342-1528 16-209 (210)
89 2of3_A ZYG-9; multifunctional 98.4 1.2E-05 4.2E-10 94.4 20.9 189 1778-2002 49-244 (266)
90 4ffb_C Protein STU2; tubulin f 98.4 4.1E-06 1.4E-10 102.5 17.5 187 1463-1653 14-217 (278)
91 2db0_A 253AA long hypothetical 98.3 0.00013 4.5E-09 76.8 24.7 215 1299-1527 31-245 (253)
92 3b2a_A TON_1937, putative unch 98.1 0.00027 9.4E-09 78.4 22.3 218 1737-1989 33-256 (265)
93 1xqr_A HSPBP1 protein; armadil 98.1 0.00011 3.9E-09 89.5 20.6 135 1394-1529 55-197 (296)
94 3nmw_A APC variant protein; AR 98.0 0.00015 5E-09 91.0 21.7 256 1474-1768 48-336 (354)
95 3nmw_A APC variant protein; AR 98.0 7.7E-05 2.6E-09 93.6 19.1 218 1313-1531 97-337 (354)
96 1xqr_A HSPBP1 protein; armadil 98.0 6.9E-05 2.4E-09 91.4 16.7 175 1353-1529 55-239 (296)
97 3b2a_A TON_1937, putative unch 97.9 0.0054 1.8E-07 68.3 26.8 218 1378-1642 33-255 (265)
98 3tjz_B Coatomer subunit gamma; 97.7 0.0016 5.5E-08 80.4 21.3 269 1346-1643 76-348 (355)
99 3tjz_B Coatomer subunit gamma; 97.6 0.00026 8.9E-09 87.4 13.8 279 1883-2177 66-348 (355)
100 1te4_A Conserved protein MTH18 97.3 5.6E-05 1.9E-09 80.6 2.2 119 1458-1645 12-130 (131)
101 4gmo_A Putative uncharacterize 97.2 0.59 2E-05 64.3 41.0 88 1458-1546 35-128 (684)
102 3grl_A General vesicular trans 97.2 0.48 1.6E-05 62.0 35.8 211 1335-1547 19-264 (651)
103 1lrv_A LRV, leucine-rich repea 97.1 8.9E-05 3E-09 86.9 0.0 186 1344-1644 56-242 (244)
104 1te4_A Conserved protein MTH18 97.0 0.00065 2.2E-08 72.2 6.6 119 1378-1525 12-130 (131)
105 1lrv_A LRV, leucine-rich repea 96.9 0.00027 9.3E-09 82.8 2.5 185 1506-1800 57-242 (244)
106 3u0r_A Apoptosis inhibitor 5; 96.9 0.5 1.7E-05 58.9 30.3 297 2240-2551 39-364 (507)
107 3grl_A General vesicular trans 96.8 0.15 5.1E-06 66.7 26.8 70 2230-2301 312-394 (651)
108 3l9t_A Putative uncharacterize 96.8 0.013 4.5E-07 66.3 14.5 185 2345-2557 33-219 (240)
109 3tt9_A Plakophilin-2; cell adh 96.6 0.014 4.7E-07 67.9 13.2 191 1458-1649 8-230 (233)
110 3l9t_A Putative uncharacterize 96.4 0.03 1E-06 63.5 14.0 143 1337-1493 70-213 (240)
111 3u0r_A Apoptosis inhibitor 5; 95.4 3.1 0.00011 52.0 26.7 269 2115-2401 32-322 (507)
112 3tt9_A Plakophilin-2; cell adh 95.0 0.3 1E-05 56.7 15.5 175 1353-1530 25-231 (233)
113 3o2t_A Symplekin; heat repeat, 93.8 8.5 0.00029 47.7 25.3 131 2472-2606 154-321 (386)
114 3gs3_A Symplekin, LD45768P; he 91.9 16 0.00054 42.7 23.0 143 2089-2259 30-174 (257)
115 1lsh_A Lipovitellin (LV-1N, LV 91.3 3.9 0.00013 58.9 20.8 154 1432-1606 407-577 (1056)
116 4atg_A TAF6; transcription, TF 90.2 13 0.00043 41.4 18.7 107 1590-1702 60-174 (196)
117 1vsy_4 Proteasome activator BL 89.1 13 0.00043 51.2 21.8 76 2110-2185 337-415 (799)
118 3o2t_A Symplekin; heat repeat, 89.0 52 0.0018 40.7 27.0 184 2243-2436 39-271 (386)
119 4atg_A TAF6; transcription, TF 89.0 4.1 0.00014 45.2 13.7 115 2225-2340 36-160 (196)
120 3fga_B Serine/threonine-protei 87.6 29 0.00099 43.0 21.3 105 2241-2346 263-370 (403)
121 1vsy_4 Proteasome activator BL 85.5 41 0.0014 46.2 23.6 276 1456-1746 337-666 (799)
122 3jxy_A Alkylpurine DNA glycosy 83.8 13 0.00044 43.1 15.2 143 2394-2557 64-207 (232)
123 3gs3_A Symplekin, LD45768P; he 83.2 76 0.0026 37.0 23.5 182 2364-2550 30-248 (257)
124 2npp_B PP2A, B subunit, serine 78.7 37 0.0013 42.9 17.5 104 2241-2345 296-402 (449)
125 2b6c_A Hypothetical protein EF 78.4 15 0.0005 42.2 13.0 141 2394-2555 58-198 (220)
126 1lsh_A Lipovitellin (LV-1N, LV 75.5 38 0.0013 48.7 18.8 134 2411-2554 375-516 (1056)
127 1w9c_A CRM1 protein, exportin 72.2 40 0.0014 40.5 14.6 136 2244-2381 44-199 (321)
128 1upk_A MO25 protein; transfera 69.1 2E+02 0.0068 34.6 23.2 78 1774-1875 208-285 (341)
129 2b6c_A Hypothetical protein EF 65.3 44 0.0015 38.2 12.9 138 1341-1494 58-195 (220)
130 3s4w_B Protein FACD2, fanconi 64.8 4.9E+02 0.017 37.5 30.4 143 2356-2504 407-552 (1323)
131 3ldz_A STAM-1, signal transduc 61.6 76 0.0026 33.2 12.7 80 2107-2186 37-118 (140)
132 3dad_A FH1/FH2 domain-containi 59.4 1.6E+02 0.0054 35.5 16.2 141 2285-2426 131-292 (339)
133 1w9c_A CRM1 protein, exportin 58.1 1.3E+02 0.0046 36.0 15.4 139 1859-1997 44-199 (321)
134 3ldz_A STAM-1, signal transduc 56.4 49 0.0017 34.7 10.2 73 1378-1451 42-116 (140)
135 1upk_A MO25 protein; transfera 53.6 3.6E+02 0.012 32.4 19.9 149 1378-1529 78-239 (341)
136 1mhq_A ADP-ribosylation factor 52.7 76 0.0026 33.6 10.9 73 1378-1451 38-118 (148)
137 1x5b_A Signal transducing adap 52.7 70 0.0024 34.5 10.8 73 1378-1451 52-127 (163)
138 1x5b_A Signal transducing adap 51.7 1.3E+02 0.0044 32.4 12.7 80 2107-2186 47-129 (163)
139 3g2s_A C-terminal fragment of 51.7 77 0.0026 33.6 10.7 73 1378-1451 48-128 (149)
140 3dad_A FH1/FH2 domain-containi 48.2 2.9E+02 0.0099 33.2 16.0 110 2232-2345 121-234 (339)
141 1juq_A ADP-ribosylation factor 47.2 1.2E+02 0.0041 33.0 11.7 80 2107-2186 45-132 (171)
142 1ho8_A Vacuolar ATP synthase s 44.7 5.8E+02 0.02 32.3 23.2 55 1898-1952 418-476 (480)
143 2npp_B PP2A, B subunit, serine 44.2 5.8E+02 0.02 32.1 21.4 236 2349-2598 162-409 (449)
144 1juq_A ADP-ribosylation factor 43.6 1.1E+02 0.0036 33.3 10.6 73 1378-1451 50-130 (171)
145 4flb_A Regulation of nuclear P 42.8 1.9E+02 0.0066 29.7 12.2 106 2316-2425 11-119 (132)
146 3g2s_A C-terminal fragment of 42.5 2.1E+02 0.0072 30.2 12.3 75 1458-1532 48-130 (149)
147 1elk_A Target of MYB1; superhe 41.4 1.5E+02 0.005 31.8 11.1 106 1339-1451 17-132 (157)
148 3jxy_A Alkylpurine DNA glycosy 39.2 2.6E+02 0.009 31.9 13.8 132 1303-1450 64-196 (232)
149 1vdy_A Hypothetical protein (R 38.1 98 0.0034 32.2 8.7 59 1682-1740 35-93 (140)
150 1vdy_A Hypothetical protein (R 37.3 60 0.0021 33.8 6.9 75 2108-2182 45-130 (140)
151 1mhq_A ADP-ribosylation factor 37.2 2.3E+02 0.0079 29.8 11.7 74 1695-1768 37-118 (148)
152 3ut4_A CTHE_2751, putative unc 36.1 1.8E+02 0.0062 29.9 10.0 87 1450-1550 23-109 (134)
153 3zyq_A Hepatocyte growth facto 33.8 2.1E+02 0.0073 32.5 11.7 105 1339-1451 9-120 (226)
154 3zyq_A Hepatocyte growth facto 31.9 4.1E+02 0.014 30.2 13.6 81 2107-2187 40-123 (226)
155 1sz9_A PCF11 protein; RNA poly 28.5 5.3E+02 0.018 26.9 13.0 84 2346-2429 40-130 (144)
156 2kw3_C Regulatory factor X-ass 28.4 17 0.00059 30.4 0.8 18 251-268 19-36 (62)
157 1dvp_A HRS, hepatocyte growth 27.3 1.9E+02 0.0065 32.8 9.8 72 1378-1450 42-116 (220)
158 3fga_B Serine/threonine-protei 25.7 1E+03 0.035 29.4 23.1 262 2285-2553 97-374 (403)
159 1dvp_A HRS, hepatocyte growth 25.7 3.8E+02 0.013 30.2 12.0 80 2107-2186 37-119 (220)
160 3ut4_A CTHE_2751, putative unc 24.8 4.7E+02 0.016 26.9 10.7 38 1686-1723 21-58 (134)
161 2fv2_A RCD1 required for cell 24.4 6.1E+02 0.021 29.2 12.7 123 2266-2399 95-222 (268)
162 1elk_A Target of MYB1; superhe 23.7 6.7E+02 0.023 26.5 13.2 79 2107-2185 48-133 (157)
163 1t06_A Hypothetical protein; s 23.3 7.7E+02 0.026 28.0 14.1 82 2474-2556 110-191 (235)
164 4flb_A Regulation of nuclear P 23.0 4.7E+02 0.016 26.7 11.0 85 2072-2162 6-94 (132)
165 2jak_A Serine/threonine-protei 20.6 1E+03 0.034 29.4 14.7 178 2230-2409 175-356 (392)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.5e-48 Score=581.69 Aligned_cols=1015 Identities=17% Similarity=0.189 Sum_probs=759.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
.-++.++..+.++++.+|..|...+...... +.+...+.+++.+++.+.+++|++|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999987776655431 22234578999999999999999999999999999987665 4
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2629)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. + +......+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~------------------~~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------G------------------SALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------------------------CCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------c------------------cchHHHHHH
Confidence 5678899999999999999999999999999877653210 0 000112355
Q ss_pred hHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000049 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2629)
Q Consensus 1576 ~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~ 1654 (2629)
.++|.+.+.+.+ .++.+|..+..+++.++...+ +.+.||++.+++.+...+.++++.||..|..+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 677777777774 678999999999999998654 46789999999999999999999999999999999999998888
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccch
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f 1731 (2629)
++.+++.+++.+.++.+...|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88999999999887654446888999999999988864 347889999999999999999999999999999999999
Q ss_pred HhhHHhHHHHHHhhcCCC-------------------------------------ChhHHHHHHHHHHHHHHHhhh---c
Q 000049 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2629)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~-------------------------------------~~~VR~~al~al~~iv~~~~~---~ 1771 (2629)
.||++.++|.++..+.++ ...+|.+|..++..++...+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888877765442 2
Q ss_pred hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCC--CCcccHHHHHHHHHHHhchhhHHHHHHHH
Q 000049 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD--DEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~e--de~~~~~~~~~~l~~~Lg~e~~~~vl~~L 1849 (2629)
.++.++|.+...+.|.++.+|..+++.++.++.......+.. . +.. ....+. ...+. ...+.+++.+
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~--~-~~~~~~~~~~~---~~~~~-----~~l~~ll~~l 439 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL--C-DPDAMEQGETP---LTMLQ-----SQVPNIVKAL 439 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---------------CCCH---HHHHH-----HHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc--c-Cccccccccch---HHHHH-----HHhhHHHHHH
Confidence 345577888888888888899999888888876543210000 0 000 000000 01111 1234566666
Q ss_pred HhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhccc----hhhh
Q 000049 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPS 1923 (2629)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~--~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2629)
...+.|.++.+|.+++.+++.++...+..+.++++.+++.+...+.++++ .+|..++..++.++...++. +++.
T Consensus 440 ~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ 519 (1230)
T 1u6g_C 440 HKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQA 519 (1230)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTT
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHH
Confidence 66678999999999999999999988877888999999999999998764 89999999999998877665 5678
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhch------hhHHHhHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHH
Q 000049 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKS 1995 (2629)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~~l~~~ 1995 (2629)
++|.+...+.++++.+|..++.+++.++..++. ..+.+|++.++|.+...+ .|.++++|..|..+++.+...
T Consensus 520 llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 520 LVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 899999899999999999999999998877664 367889999999999999 788999999999999999998
Q ss_pred hChhh---hhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHH-hCCChhhh
Q 000049 1996 AGMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFH 2071 (2629)
Q Consensus 1996 ~g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~-~g~~l~~~ 2071 (2629)
.|... +..++|.|.+.+.++..+..++. +++.++.. .+.++.++
T Consensus 600 ~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~--------------------------------al~~i~~~~~~~~~~~~ 647 (1230)
T 1u6g_C 600 LGDNLGSDLPNTLQIFLERLKNEITRLTTVK--------------------------------ALTLIAGSPLKIDLRPV 647 (1230)
T ss_dssp TGGGCCTHHHHHHHHHHHHTTSSSHHHHHHH--------------------------------HHHHHTTCSSCCCCHHH
T ss_pred hCchhhhhHHHHHHHHHHHhccchhHHHHHH--------------------------------HHHHHHhCccccchHHH
Confidence 88643 34445555555554443333333 33333221 12357889
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~ 2147 (2629)
++.++|.+.+.+.+++..+|..+..+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+
T Consensus 648 ~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~ 727 (1230)
T 1u6g_C 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL 727 (1230)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhH
Confidence 999999999999999999999999999999987753 3355555555566778889999999999999998877777
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccc
Q 000049 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l 2227 (2629)
.++.+.+++.++..+.++. +...+..++..+++.. .. . + ++ +...
T Consensus 728 ~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~ 772 (1230)
T 1u6g_C 728 SKISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGY 772 (1230)
T ss_dssp GGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSH
T ss_pred HHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCH
Confidence 7788888888888876543 1112222222222111 00 0 0 00 1122
Q ss_pred hhhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHH
Q 000049 2228 QPLLPIFLQGLISG-----SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIR 2301 (2629)
Q Consensus 2228 ~~ilp~ll~~L~~~-----~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~ 2301 (2629)
..+++.+++.+..+ ....+..++.+++.++..+|+ .....+..+ +..+.+ ......+..++.+++.++.
T Consensus 773 ~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~ 847 (1230)
T 1u6g_C 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGH 847 (1230)
T ss_dssp HHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhcc
Confidence 23333333222211 234577889999999998874 233332322 333332 1356678888888998877
Q ss_pred hcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2302 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2629)
Q Consensus 2302 ~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2629)
..+ +.+ .|++++++++++.|+++.||..|+.+||.++. ++++.++|.++..+... ++.|+.++++|++++...+
T Consensus 848 ~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~ 921 (1230)
T 1u6g_C 848 HID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSAS 921 (1230)
T ss_dssp HSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSC
T ss_pred cCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCC
Confidence 543 344 48899999999999999999999999999974 45778999999999754 6779999999999999876
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCC
Q 000049 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461 (2629)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p 2461 (2629)
.....++.+.|++.|...+.+.++.+|..+++|+|.++...++ .+++
T Consensus 922 ~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p----------------------------- 968 (1230)
T 1u6g_C 922 VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLP----------------------------- 968 (1230)
T ss_dssp STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHH-----------------------------
T ss_pred hhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHH-----------------------------
Confidence 6666899999999999999888899999999999999877542 1222
Q ss_pred ccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000049 2462 SAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541 (2629)
Q Consensus 2462 ~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~ 2541 (2629)
.+.+.+.++++.+|..++.++++++.... +..+.++..+++.++.+++|++.+||++|+.+++
T Consensus 969 --------------~l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~ 1031 (1230)
T 1u6g_C 969 --------------RLKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1031 (1230)
T ss_dssp --------------HHTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHH
T ss_pred --------------HHHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 22233445556677777777777665433 2223467778888999999999999999999999
Q ss_pred HHHhhCchhhhhhHHHHHHHHHhhhcCC------------------cchhhhhHHHHHHHHhccccCchhHHHHHHHhhh
Q 000049 2542 SVAKANPSAIMVHVALFGPALAECLKDG------------------STPVRLAAERCAVHAFQLTRGSEYIQGAQKFITG 2603 (2629)
Q Consensus 2542 ~~a~~~~~~v~~~l~~l~p~l~~~~~~~------------------~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~l~~ 2603 (2629)
++++++|+.+.+|++.++|.||++++.+ +..+|.+|..|+..+++...+. . .+.++
T Consensus 1032 ~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~--i-~~~~~--- 1105 (1230)
T 1u6g_C 1032 SAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR--L-DIFEF--- 1105 (1230)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS--S-CHHHH---
T ss_pred HHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHh--C-CHHHH---
Confidence 9999999999999999999999998544 4489999999999999986542 2 13334
Q ss_pred hhhhhhccCCCC
Q 000049 2604 LDARRLSKFPEH 2615 (2629)
Q Consensus 2604 ~~~~~l~~~~~~ 2615 (2629)
..++++.++|+
T Consensus 1106 -~~~~~~gl~d~ 1116 (1230)
T 1u6g_C 1106 -LNHVEDGLKDH 1116 (1230)
T ss_dssp -HHHHHHTTSSC
T ss_pred -HHHHHcccCch
Confidence 45677777773
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.8e-47 Score=571.82 Aligned_cols=1074 Identities=17% Similarity=0.182 Sum_probs=786.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch--hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
..+..+++.+.+ .|.+.|..|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 6 ~~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 6 YHISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--
T ss_pred hHHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--
Confidence 345667777654 457889988888877664321111 11125777888888876 899999999999999987764
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhhHHHHHhhhc-cCChhhhHHHHHHHHH
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGA 1484 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ 1484 (2629)
+++..+++.++..+.|+++.||.++..+++.++..+.+. .+..++|.+++.+. +++|++|.+++.+++.
T Consensus 82 -~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 -YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp -HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 5889999999999999
Q ss_pred HHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCC-hhHH-HHHHHHHh
Q 000049 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQ 1562 (2629)
Q Consensus 1485 la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~-~~~r-~al~~L~~ 1562 (2629)
++...+..+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..+++.++..+.+++ ...| .+++.+..
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 998888888888999999999999999999999999999999988876666677777777765432 2233 34444432
Q ss_pred c-cccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc------------
Q 000049 1563 T-TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------ 1629 (2629)
Q Consensus 1563 ~-~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------ 1629 (2629)
. ...+..-.+++..++|.+.+.+.+.++.+|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCccccc
Confidence 1 111222235678899999999999999999999999999998654 4788999999999877663
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhccCCChHHHHHHHHH
Q 000049 1630 -------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2629)
Q Consensus 1630 -------------------------d~~~~VR~~A~~aL~~l~~~~g~---~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~ 1681 (2629)
|..|.+|..|+.+++.++...++ .++..++|.+...+.+.. ..+|..++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~ 397 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHA 397 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 12367899999999999987664 256677787777665443 5589899999
Q ss_pred HHHHHHhhCh------------------h----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHH
Q 000049 1682 LSEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2629)
Q Consensus 1682 L~~i~~~~g~------------------~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii 1739 (2629)
+..++...|. . .++.++|.+.+.+.+.++.+|.+++.+++.++..++..+.+|++.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll 477 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 477 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHH
Confidence 9888876652 1 23555666666689999999999999999999998888889999999
Q ss_pred HHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhc----hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccc
Q 000049 1740 PAILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2629)
Q Consensus 1740 ~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~----~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~ 1813 (2629)
|.++..+.|... .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..+.....
T Consensus 478 ~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~-- 555 (1230)
T 1u6g_C 478 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ-- 555 (1230)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS--
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc--
Confidence 999999999864 88999999988888766555 4567899999999999999999999999998765432100
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc--cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHH
Q 000049 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2629)
Q Consensus 1814 ~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~ 1891 (2629)
...... . .+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+.
T Consensus 556 -----~~~~~~---------~-----~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 556 -----PSSFDA---------T-----PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 616 (1230)
T ss_dssp -----CCCCCC---------H-----HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHH
T ss_pred -----ccccch---------H-----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHH
Confidence 000000 0 13345666665555 78888999999999999999988888889999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH
Q 000049 1892 SSLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2629)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2629)
..+.+. ..|..+..+++.++...+ ..+.+.++|.+...+.++++.+|.+++.+++.++...+.....+++..++
T Consensus 617 ~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l 694 (1230)
T 1u6g_C 617 ERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694 (1230)
T ss_dssp HHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 888754 378889999998875432 23678899999999999999999999999999988776433233444444
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhh
Q 000049 1968 PTIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2629)
Q Consensus 1968 ~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2629)
..+...+.+.|..++..+..++..+++..+.. ..+.++|.++..+++....+.++.++..++
T Consensus 695 ~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~--------------- 759 (1230)
T 1u6g_C 695 DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF--------------- 759 (1230)
T ss_dssp TTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH---------------
T ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH---------------
Confidence 44445567888999999999999888665543 245667777766665443333333332221
Q ss_pred hcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Q 000049 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2629)
Q Consensus 2045 ~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2629)
..+... +. -.+.+..+++.+++.+.. .+...+..+..+++.++...++.. ..+++.+..
T Consensus 760 -------------~~l~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~ 823 (1230)
T 1u6g_C 760 -------------QALVVT-GT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQ 823 (1230)
T ss_dssp -------------HHHHTT-CC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTT
T ss_pred -------------HHHHhc-CC-CCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHH
Confidence 111110 11 023456666666655432 234567777888888877665433 267777777
Q ss_pred hcCC--CChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 000049 2120 GVGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2629)
Q Consensus 2120 ~l~d--~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~ 2197 (2629)
.+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.||+.++..
T Consensus 824 ~~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~-------------- 886 (1230)
T 1u6g_C 824 DVKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG-------------- 886 (1230)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--------------
T ss_pred HhCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc--------------
Confidence 7765 4567788888888887553 23333 366889999999999999999999999998521
Q ss_pred HHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
++..++|.+++++.++ ++.|...+.+|.+++...+...+.||+..|++.|+
T Consensus 887 ----------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~ 937 (1230)
T 1u6g_C 887 ----------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937 (1230)
T ss_dssp ----------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHT
T ss_pred ----------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHH
Confidence 1234567777777655 56688888888888876554555565555555444
Q ss_pred HHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000049 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2629)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~ 2357 (2629)
+ .+.+.++.+|..++.|+|.+....+ +.++|.|...
T Consensus 938 ~------------------------------------------~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~ 973 (1230)
T 1u6g_C 938 K------------------------------------------HCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGY 973 (1230)
T ss_dssp T------------------------------------------CCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTT
T ss_pred H------------------------------------------HhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHH
Confidence 4 4444455677777777777765543 5677777777
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChh---HHHHHHHHH
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQEL 2434 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~l 2434 (2629)
++++++.+|..++.+++.++...+... .++.+.++..+...++|++.++|.++..+++.+++..|+. .+..+++.+
T Consensus 974 l~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l 1052 (1230)
T 1u6g_C 974 LISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1052 (1230)
T ss_dssp SSSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 777777788888888877776666555 4677777777778889999999999999999999887752 233334333
Q ss_pred HhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhh
Q 000049 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV 2514 (2629)
Q Consensus 2435 l~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l 2514 (2629)
.+.......-.| .+..+| +++..+++.++|++|+.|+++++.++... ..+
T Consensus 1053 ~~~~~~~~~~~~---------~v~~gp----------------~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~ 1102 (1230)
T 1u6g_C 1053 YNETKVRKELIR---------EVEMGP----------------FKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDI 1102 (1230)
T ss_dssp HHTTSCCGGGEE---------EEEETT----------------EEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCH
T ss_pred HHHhcccHHhhe---------eeccCC----------------cccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCH
Confidence 332111110000 011112 12455677799999999999999987543 358
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhhhcC--Ccchhh----------hhHHHHHH
Q 000049 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPVR----------LAAERCAV 2582 (2629)
Q Consensus 2515 ~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~vk----------~aae~a~~ 2582 (2629)
.++++.++.++.|+ .|+|..+..+|.+++..+|..+.++++.++.++.+.+.. +...|| +++.||+.
T Consensus 1103 ~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~ 1181 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVA 1181 (1230)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Confidence 89999999999995 899999999999999999999999999999999887432 333454 45558999
Q ss_pred HHhccccCchhH
Q 000049 2583 HAFQLTRGSEYI 2594 (2629)
Q Consensus 2583 ~l~~~~~~~~~~ 2594 (2629)
++.++++.+...
T Consensus 1182 ~l~~~~~~~~~~ 1193 (1230)
T 1u6g_C 1182 ALLTIPEAEKSP 1193 (1230)
T ss_dssp HTTSSCSCSSSS
T ss_pred HHHhCCCcccCh
Confidence 999887765443
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.6e-34 Score=412.01 Aligned_cols=723 Identities=15% Similarity=0.151 Sum_probs=532.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHHH--------HHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~--------~w~~~~~~~ 1128 (2629)
+++.++|++++|||+.+|++|+++|++... .|....++..+.....+.+..+|.+|.. .|...+.+.
T Consensus 13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-----~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~ 87 (852)
T 4fdd_A 13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87 (852)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH
Confidence 367889999999999999999999997642 1333334444444335667788888753 366544333
Q ss_pred CCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000049 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~ 1206 (2629)
++.+ ..+++.|.+++..+|+.++++++.++.. +++.|++++..+.+... ++++.+|+++..+++.+++
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~----------~~~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----------SEDYNTCEGAFGALQKICE 157 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS----------CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHH
Confidence 3345 7788899999999999999999998763 56777777777776531 1345899999999999987
Q ss_pred hcCCC----C----hhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc---cchhhhHHHHHHHhcccCCChhhhhh
Q 000049 1207 VLRTK----D----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2629)
Q Consensus 1207 ~~~~~----~----~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~---~~~~~Ll~~~~~~l~~~~~~~~~~~~ 1275 (2629)
..+.. + .+.+++.+ .+++.|+++.||..++.++..++...+. ..+..+++.+...+.+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d------~~~~ 230 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKF-LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD------EEPE 230 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHH-TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC------CCHH
T ss_pred HhHHHhchhhhcchHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC------CCHH
Confidence 65432 2 34555555 3677899999999999998777654332 2345677766666643 2356
Q ss_pred HHHHHHHHHHHHHhhhcc-CCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh------hccchHHHHHHHHHHhh-
Q 000049 1276 VREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLM- 1347 (2629)
Q Consensus 1276 vr~~~v~~~~~La~~l~~-~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~------~~~~~~~ll~~ll~~L~- 1347 (2629)
+|..++..++.++..... ..++++.+++.+++.++++++.|+..+.+++..+... .+.....+++.++..+.
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999876543 2567888999999999999999999999888776532 23334567777777762
Q ss_pred ---------cC-----------CCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000049 1348 ---------KS-----------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2629)
Q Consensus 1348 ---------~~-----------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La 1407 (2629)
.. .+|..|+.|+.+|+.++...|...+. .+++.+.+.+.+. +|..|++|+.+++.++
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~--~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22 35778999999999999998866554 6899999999887 8999999999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHh
Q 000049 1408 EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1408 ~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2629)
++.++.+.+++..++|.++..+.|+++.||.++..+++.+...+.+
T Consensus 388 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---------------------------------- 433 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS---------------------------------- 433 (852)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH----------------------------------
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc----------------------------------
Confidence 9988878899999999999999999999999988887776432211
Q ss_pred hCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
.....++..+++.++..+.|+++.||.+|+.+|+.+++..+. |++..+++.|...+
T Consensus 434 ---~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l------------------ 492 (852)
T 4fdd_A 434 ---QPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF------------------ 492 (852)
T ss_dssp ---SCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH------------------
T ss_pred ---chHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH------------------
Confidence 113445678889999999999999999999999999876653 34444444444443
Q ss_pred ccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHH---HhcCCCHHHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAAR 1641 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~---~L~d~~~~VR~~A~~ 1641 (2629)
++.+......+.++++.++..++..-.-.+|++.++|.+.+ .+.|.++.+| .+.+
T Consensus 493 ---------------------~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~ 550 (852)
T 4fdd_A 493 ---------------------SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLE 550 (852)
T ss_dssp ---------------------HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHH
T ss_pred ---------------------HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHH
Confidence 22233444456677777776554422224589999999884 4567778886 7899
Q ss_pred HHHHHHhhhCCCC---chhhHHHHHHHhcc----------------CCChHHHHHHHHHHHHHHHhhChhH---H--HhH
Q 000049 1642 AIGSLIRGMGEEN---FPDLVSWLLDALKS----------------DNSNVERSGAAQGLSEVLAALGTVY---F--EHI 1697 (2629)
Q Consensus 1642 aL~~l~~~~g~~~---~~~ll~~Ll~~L~~----------------~~~~~~R~~a~~~L~~i~~~~g~~~---l--~~l 1697 (2629)
+++.++..+|... .+.+++.++..+.+ ......+..+...++.++..+|.+. + +.+
T Consensus 551 ~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~ 630 (852)
T 4fdd_A 551 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 630 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcH
Confidence 9999999999752 34555544433321 1123356778888999999998663 2 467
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHH
Q 000049 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2629)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ll 1777 (2629)
++.+++.+.++++.+|+.++.+++.++..+|..|.+|++.++|.+...+.+++..+|..|..+++.++...+....+
T Consensus 631 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p--- 707 (852)
T 4fdd_A 631 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQP--- 707 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGG---
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHH---
Confidence 89999999999999999999999999999999999999999999999998888889998888888776655432100
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc--cC
Q 000049 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SD 1855 (2629)
Q Consensus 1778 p~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~--~D 1855 (2629)
+...+++.++..+ .+
T Consensus 708 ---------------------------------------------------------------~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 708 ---------------------------------------------------------------YIPMVLHQLVEIINRPN 724 (852)
T ss_dssp ---------------------------------------------------------------GTHHHHHHHHHHHTCSS
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhCCCC
Confidence 1111222222222 23
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh--c
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--L 1932 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~--L 1932 (2629)
....+++.|+.+++.+....|..+.++++.+++..+..+.. .+.+.|..|..++..++..-+....+.+..++... .
T Consensus 725 ~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~ 804 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASW 804 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhc
Confidence 35578999999999999999988889999999999999874 56678999999999999987776666665443332 3
Q ss_pred CCCChhHHHHHHHHH
Q 000049 1933 KDPSASRRQGVCIGL 1947 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL 1947 (2629)
.++.++.+......|
T Consensus 805 ~~~~~~l~~~~~~~l 819 (852)
T 4fdd_A 805 INPKDDLRDMFCKIL 819 (852)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 445566555544443
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.6e-33 Score=407.43 Aligned_cols=742 Identities=13% Similarity=0.152 Sum_probs=564.7
Q ss_pred hHhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000049 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2629)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~--- 1206 (2629)
+..+|..+ .++|+.+|+.|.+.+..+.+. .|+.+. .+.+.+. .. ..+..+|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~----~l~~il~----~~----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAG----LSSQVLI----DE----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHH----HHHHHHh----CC----CCChHHHHHHHHHHHhhccCcC
Confidence 35677777 889999999999999876554 233333 3333321 10 1244789888888887642
Q ss_pred ------------h-cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHhcccCCChhh
Q 000049 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2629)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~-~~~~~Ll~~~~~~l~~~~~~~~~ 1272 (2629)
. ++++....+...++ .++.++++.+|..+..++..+....+. ..|++++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-----~ 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----Q 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----S
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-----C
Confidence 1 34344445555554 467788899999999998888777544 58999999888888642 1
Q ss_pred hhhHHHHHHHHHHHHHhhhccC----CCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhccch------HHHHH
Q 000049 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2629)
Q Consensus 1273 ~~~vr~~~v~~~~~La~~l~~~----~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~~~------~~ll~ 1340 (2629)
+..+|+.++..++.+.+.+... .+.+..+++.+...+.++ +++||..+.+|+..++..++... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3468999999999999876533 356778888899999998 89999999999988765543221 23444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~------- 1411 (2629)
.+.+ +..++++..|..+..+|..++...+..... -. .+++.+...+.+. +...|..++..+..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345567999999999999999877643221 11 5666677777766 78999999999999887631
Q ss_pred ----------cCchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
..+.+++..++|.++..+.+ .+..+|.++..++..++..+++..+..++|.+.+.+.+.+|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999998874 3468999999999999998887777889999999999999999
Q ss_pred hHHHHHHHHHHHhhCc-hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhH
Q 000049 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~ 1553 (2629)
|.+++.+++.++..+. +.+.++++.++|.+...+.|+++.||.++++++++++..++..
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------------------- 445 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-------------------- 445 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG--------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh--------------------
Confidence 9999999999998764 7788889999999999999999999999999999998765410
Q ss_pred HHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CCcccchHhhhHHHHHHHhcC-
Q 000049 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2629)
Q Consensus 1554 r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2629)
+ ...+.+..++|.+.+.+.+. +++|..++.++++++..+++ +..+.+|++.+++.+...+.+
T Consensus 446 -----------~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 446 -----------I---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp -----------S---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred -----------c---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 0 01123445666666667665 78999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccC--------------CChHHHHHHHHHHHHHHHhhChh
Q 000049 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2629)
Q Consensus 1631 -~~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~--------------~~~~~R~~a~~~L~~i~~~~g~~ 1692 (2629)
.++.+|..++.+++.++...|++ ++..++|.+++.+.+. .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777766532 11235667888999999988874
Q ss_pred ---HHHhHhHHHHHhhcCCCh-hhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000049 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2629)
Q Consensus 1693 ---~l~~llp~l~~~l~~~~~-~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~ 1768 (2629)
+.+.++|.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.+...+.+++..+|..++.++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888888777 8999999999999999999999999999999999998877788888777766665543
Q ss_pred hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHH
Q 000049 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2629)
Q Consensus 1769 ~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~ 1848 (2629)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11122233
Q ss_pred HHhhccCc--cHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000049 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2629)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~-----------~~~R~~A~~~L~~lv~~ 1915 (2629)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999998888999999999999999887432 45789999999999988
Q ss_pred hcc---c---hhhhHHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhchhhHHHhHH-HHHHHHHHHhc---CCcHHH
Q 000049 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2629)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~d~~V 1981 (2629)
+++ . +.+.+++.+...+.|. +..+|..++.+++.++..+++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 4566777777777663 88999999999999988885556778888 88999888766 567899
Q ss_pred HHHHHHHHHHHHH
Q 000049 1982 RESAGLAFSTLFK 1994 (2629)
Q Consensus 1982 R~~A~~al~~l~~ 1994 (2629)
+..|.++.+.+..
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-31 Score=385.51 Aligned_cols=745 Identities=12% Similarity=0.128 Sum_probs=562.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHHH-HHHHHHhc-cc------------ccc-CCh
Q 000049 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TF------------VNT-VDA 1571 (2629)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r~-al~~L~~~-~~------------~~~-~~~ 1571 (2629)
.++++.+|..|.+.|.++.+. ....+.+.+...+.+. +..+|. |...+... .. ... ++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 677889999999999887542 1234455566665543 456673 33333221 00 121 455
Q ss_pred hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhh
Q 000049 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1572 ~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~ 1650 (2629)
.....+.+.+...+.+.+..+|..++++++.++.... + ...++.++|.+...+.++ ++.+|..+..+++.+.+.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL-P---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-G---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-c---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5666778888888999899999999999999987521 1 114678999999999988 9999999999999999877
Q ss_pred CCC------CchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHH
Q 000049 1651 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2629)
Q Consensus 1651 g~~------~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~ 1718 (2629)
+++ +...+++.+...+.+++ +..+|..++.+++.++..++.. ....+++.+.+.+.+.++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 654 34567777777777653 5668988988888875433321 12457777778888899999999999
Q ss_pred HHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh--------------------hchhhhHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1777 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~--------------------~~~i~~ll 1777 (2629)
++..++...+..|.+|+. .+++.+...+.|.++.+|..+++.+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888876531 11234466
Q ss_pred HHHhhccC-------CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHH
Q 000049 1778 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2629)
Q Consensus 1778 p~l~~~l~-------d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~ 1850 (2629)
|.+...+. |++|.+|..+.+.++.+... +|.+....+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 66655543 34577888777777766432 22223344555555
Q ss_pred hhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----chhhhH
Q 000049 1851 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1924 (2629)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~-----~~l~~l 1924 (2629)
..+.+.++.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..+..+++.++...+. ...+.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 55678889999999999999998764 778889999999999999999999999999999999988764 357888
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhc---hhhHHHhHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
+|.+...+.++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99998888876 9999999999999988776 36678999999999999997 445889999999999999888764
Q ss_pred ---hhhhhHHHHHHhccCcCc------hhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhh
Q 000049 2000 ---AIDEIVPTLLHALEDDQT------SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2629)
Q Consensus 2000 ---~~~~ilp~Ll~~L~~~~~------~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~ 2070 (2629)
.+..++|.+++.+.+... ....-+... .+......+++.+....|..+.+
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ---------------------ELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH---------------------HHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHH---------------------HHHHHHHHHHHHHHHHhhhhhHH
Confidence 244556666655532100 000000000 01112456778888888888999
Q ss_pred hHhhhHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhh
Q 000049 2071 HLGTILPALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L~~~~~-~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~ 2146 (2629)
|++.+++.++..+.+.+. .+|+.+..+++.++...+. +++..+++.+...++++++.+|..++.+++.++...+..
T Consensus 594 ~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh
Confidence 999999999999987766 8999999999988877654 457888999999998888999999999999999988888
Q ss_pred hhhhHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---ccchHHHHHHHHhhhhhhhhhhhcCCcccccCC
Q 000049 2147 LVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221 (2629)
Q Consensus 2147 ~~~~~~~il~~Ll~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~ 2221 (2629)
+.+|.+.+++.++..+++++ ..+|..+..+++.++...+... ++.+++.+.+.+... ++.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~---------------~~~ 738 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK---------------PEN 738 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC---------------CSS
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC---------------CCC
Confidence 99999999999999998764 8899999999999988765543 222222222222110 000
Q ss_pred CCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC--hhhhhhchhhhhHHHHHHhcCC--C-CHhHHHHHHHHH
Q 000049 2222 CLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTL 2296 (2629)
Q Consensus 2222 ~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~~~--~-~~~vk~~al~~L 2296 (2629)
+ ..-.. .....+|..++.+++.++...+ +..+.||+..++..+.+.+.+. . ++.+|.+++.++
T Consensus 739 ----~-d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l 806 (861)
T 2bpt_A 739 ----G-TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLI 806 (861)
T ss_dssp ----S-SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHH
T ss_pred ----C-ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 0 00000 0013578899999999998887 3569999999999998888763 2 789999999999
Q ss_pred HHHHHhc-CCCccCchH-HHHHHHHHHcCC---CCHHHHHHHHHHHHHHH
Q 000049 2297 SIIIRKG-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2297 ~~L~~~~-~~~l~p~lp-~L~~~~~k~L~d---~~~~vR~~Aa~aLg~l~ 2341 (2629)
+.++..+ |..+.+|++ ++.+.+++.+.. .+..++..|..+++.+.
T Consensus 807 ~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 807 GDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9999999 889999999 999999998873 47789999999998874
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9.1e-32 Score=391.97 Aligned_cols=740 Identities=15% Similarity=0.162 Sum_probs=552.9
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHHH-HHHHHHh---c----------ccccc
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQ---T----------TFVNT 1568 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r~-al~~L~~---~----------~~~~~ 1568 (2629)
+..+.++++.+|..|...|.++... ....+.+.|+..+.++ +..+|. |...+.. . .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345677999999999999887642 2345666666666553 456673 2222211 0 01123
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l 1646 (2629)
+.......+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.++|.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 555566677777888888877778 889999999987531 1245788999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhccCC-ChHHHHHHHHHHHHHHHhhChhH----H-HhHhHHHHHhhcCCChhhHHHH
Q 000049 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1647 ~~~~g~----~~~~~ll~~Ll~~L~~~~-~~~~R~~a~~~L~~i~~~~g~~~----l-~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
+..++. .+.+.+++.+...+.+++ +..+|..++.+++.++..++... + ..+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987642 356778888888887663 46688899999988876554321 1 2467777777888899999999
Q ss_pred HHHHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh------------------------c
Q 000049 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2629)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~------------------------~ 1771 (2629)
+.++..++...+..|.||+. .+++.++..+.+.++.+|..+++.+..+++.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred hhhhHHHHHhhccC-------CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHH
Q 000049 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~-------d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2629)
.+..++|.+.+.+. |++|++|.++..+++.+... +|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 12345555544432 45677777777777666432 22223344
Q ss_pred HHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000049 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2629)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~----- 1918 (2629)
+++.+...+.|.++.+|.+|+.+++.++.+.+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 55655566788999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred chhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc-------------hhhHHHhHHHHHHHHHHHhcCC---cHHHH
Q 000049 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2629)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---d~~VR 1982 (2629)
..++.+++.+...+.++ +.+|..++.+++.++...+ ...+.+|++.++|.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35778888888888885 8999999999999887654 1346789999999999998865 35789
Q ss_pred HHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCc---------CchhHHHHHHHHHHhhhccCcCcccchhhhcCCCc
Q 000049 1983 ESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2629)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2629)
..+.++++.+....|... ...++|.+++.+... +.+......+ .
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~------------------------~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL------------------------Q 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH------------------------H
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHH------------------------H
Confidence 999999999998887532 334555555444320 0000000000 0
Q ss_pred hhHHHHHHHHHHHhC-CChhhhHhhhHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcCCC
Q 000049 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2629)
Q Consensus 2051 ~~~~~aL~~La~~~g-~~l~~~l~~il~~Ll~~L~~~~--~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~d~ 2124 (2629)
.....+++.+....| ..+.+|++.++|.+++.+.+.. +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456677777778 8899999999999999997764 47899999999988876543 56788899998888776
Q ss_pred -ChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHh
Q 000049 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2629)
Q Consensus 2125 -~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~ 2201 (2629)
++.+|..++.+++.++...+..+.+|.+.+++.++..+.+ .+..++..+..+++.++...+.+..+ +
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~-~--------- 731 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK-Y--------- 731 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG-G---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH-H---------
Confidence 8999999999999999888888999999999999999986 46789999999999998766544222 1
Q ss_pred hhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHhhcCh--------
Q 000049 2202 TSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-----------SAELREQAALGLGELIEVTSE-------- 2262 (2629)
Q Consensus 2202 ~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-----------~~~~r~~aa~~L~~l~~~~~~-------- 2262 (2629)
+..++|.+.+.+... ...+|..+..+++.++...+.
T Consensus 732 -------------------------l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~ 786 (876)
T 1qgr_A 732 -------------------------LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPD 786 (876)
T ss_dssp -------------------------HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGG
T ss_pred -------------------------HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccch
Confidence 122223332222211 126788888999988877653
Q ss_pred -hhhhhchhhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HcCCCCHHHHHHHHHHH
Q 000049 2263 -QSLKEFVIPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALAL 2337 (2629)
Q Consensus 2263 -~~l~p~v~~i~~~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-lp~L~~~~~k-~L~d~~~~vR~~Aa~aL 2337 (2629)
..+.||++.+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++
T Consensus 787 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 787 VMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp GGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHH
Confidence 4688999999877766666543 679999999999999999988 78887 5678888888 89999999999999999
Q ss_pred HHHHhcc
Q 000049 2338 GKLSALS 2344 (2629)
Q Consensus 2338 g~l~~~~ 2344 (2629)
|.+..+.
T Consensus 867 ~~~~~~~ 873 (876)
T 1qgr_A 867 KELRKLK 873 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9997654
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=6.5e-31 Score=379.19 Aligned_cols=722 Identities=15% Similarity=0.166 Sum_probs=558.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHh--ccccccCChhhhhhHHHHHHHh
Q 000049 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQ--TTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~--~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
..++++.+|+.|.+.|.++-. +|.+...+-.++..+.+.+..+|. |.-.+-. ......+++.....+.+.+.+.
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 357799999999999987743 566655555555555566677884 3222221 0222345666777889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000049 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2629)
Q Consensus 1585 L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--------~~~ 1656 (2629)
+.+.+..+|..++.+++.++... . ....+.+++.+...+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2357889999999999999999999999999999887643 256
Q ss_pred hhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHh
Q 000049 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2629)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p 1733 (2629)
.++|.+++.+.+. +..+|..++.+++.++...+.. .++.+++.+.+.+.++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7788888777654 5668999999998777654433 24678889999899999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----hhhchhhhHHHHHhhccC-----------C-----------
Q 000049 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2629)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~-----~~~~~i~~llp~l~~~l~-----------d----------- 1786 (2629)
|++.+++.++..+.|.++.||..|++.+..+++. +-...+..++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999988877542 122345567777766552 2
Q ss_pred CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHH
Q 000049 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2629)
Q Consensus 1787 ~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~ 1866 (2629)
.+|.+|.++...++.+. ..+|.+....+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666666666666554 22333334455565555667889999999999
Q ss_pred HHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhHHHH
Q 000049 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2629)
Q Consensus 1867 ~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2629)
+++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.+....+. .....+++.+...+.++++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987653 356788888999999999999999
Q ss_pred HHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----hhhhhHHHHHHhc---cC
Q 000049 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----AIDEIVPTLLHAL---ED 2014 (2629)
Q Consensus 1943 a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~~~~ilp~Ll~~L---~~ 2014 (2629)
++.+++.++..++.. +.+|++.+++.+...+.+.+......+..+++.+....|.. .++.++|.+++.+ .+
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d 540 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhccc
Confidence 999999998877654 78899999999999998887777777888999998877753 3445555555322 22
Q ss_pred cCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC----------
Q 000049 2015 DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG---------- 2084 (2629)
Q Consensus 2015 ~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~---------- 2084 (2629)
++.. . .....+++.++...|..+.||++.+++.+++.+.
T Consensus 541 ~~~~------------------------------~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~ 589 (852)
T 4fdd_A 541 EDKD------------------------------L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 589 (852)
T ss_dssp TCTT------------------------------H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHH------------------------------H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1110 0 0234677888888899999999998887665542
Q ss_pred -------CCCHHHHHHHHHHHHHHHhhccccc---H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHH
Q 000049 2085 -------DDDMDVQSLAKEAAETVTLVIDEEG---V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 2152 (2629)
Q Consensus 2085 -------~~~~~vr~~a~~al~~l~~~~~~~~---~--~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~ 2152 (2629)
.++.+++..+..+++.++...+.+. + ..+++.++..+.+.++.+|..+..+++.++...+..+.+|++
T Consensus 590 ~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~ 669 (852)
T 4fdd_A 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA 669 (852)
T ss_dssp HCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred cCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2256688888899999988776432 2 457888899899989999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHH
Q 000049 2153 NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232 (2629)
Q Consensus 2153 ~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp 2232 (2629)
.+++.+...+++.+..++.+|..+++.++...+.+.. .++..+++
T Consensus 670 ~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~-----------------------------------p~~~~il~ 714 (852)
T 4fdd_A 670 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----------------------------------PYIPMVLH 714 (852)
T ss_dssp HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG-----------------------------------GGTHHHHH
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH-----------------------------------HHHHHHHH
Confidence 9999999999888899999999999998765533211 23445666
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc
Q 000049 2233 IFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2629)
Q Consensus 2233 ~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2629)
.+...+.+. ...+++.++.++|+++...+ +.+.||++++++++.+.+....+.+.|..++.+|+.++..-|..+.+.
T Consensus 715 ~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~-~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~ 793 (852)
T 4fdd_A 715 QLVEIINRPNTPKTLLENTAITIGRLGYVCP-QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD 793 (852)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHHhCH-HHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHH
Confidence 666666554 45789999999999998854 788999999999999999876677789999999999999988776666
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000049 2311 LPQLQTTFIKCLQDSTRTVRSSAALALG 2338 (2629)
Q Consensus 2311 lp~L~~~~~k~L~d~~~~vR~~Aa~aLg 2338 (2629)
+..+...+ ....+++++++......|.
T Consensus 794 ~~~~~~~~-~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 794 FIFFCDAV-ASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHH-HTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCCCCHHHHHHHHHHHH
Confidence 66555543 3344556666655554443
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.5e-31 Score=389.65 Aligned_cols=733 Identities=16% Similarity=0.189 Sum_probs=559.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000049 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2629)
Q Consensus 1584 ~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~----------- 1650 (2629)
.+.+.+..+|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|...+...
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34466789999999999886542 234566666676665 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-hHHHhHhHHHHHhhcCC--ChhhHHHHHHHHHHh
Q 000049 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2629)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-~~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~L 1723 (2629)
.++....+.+.+++.+.++... . ..+++.++.++...+. ..+++++|.+.+.+.++ ++.+|.+++.++..+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112234455577777765544 4 7888999999887655 56889999999999988 899999999999999
Q ss_pred hhhh-ccchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc----h-hhhHHHHHhhccCCCchHHHHHH
Q 000049 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQSS 1795 (2629)
Q Consensus 1724 ~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~----~-i~~llp~l~~~l~d~~~~vR~sa 1795 (2629)
+..+ ++.|.++++.+++.+.+.+.++ +..+|..+++++..++..++.. . .+.+++.+.+.+.+.++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4567889999999999999987 6889999999998876543321 1 12467777777888899999999
Q ss_pred HHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcC
Q 000049 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2629)
Q Consensus 1796 ~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2629)
+++++.++...+.. +...+. ..+++.+.....|.+..||..|++.|..++...
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~~~~----~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------METYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHHHHT----TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHHHHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987542210 111111 134555555557778899999999999987642
Q ss_pred h---------------------hhHhhhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000049 1876 P---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2629)
Q Consensus 1876 ~---------------------~~l~~~l~~Ll~~L~~~L~-------~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2629)
. ...+++++.+++.++..+. +.++..|..|..+++.++...++.+.+.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~ 370 (876)
T 1qgr_A 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (876)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHH
Confidence 1 1233456777888887775 34678999999999999999998888999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhhh
Q 000049 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2629)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-----~~~~ 2002 (2629)
+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..++
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 99999999999999999999998776665667789999999999999999999999999999999987654 3456
Q ss_pred hhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC--------------CCh
Q 000049 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PGL 2068 (2629)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g--------------~~l 2068 (2629)
.++|.++..|.++. . +....+.+++.++..++ ..+
T Consensus 451 ~~l~~l~~~l~~~~-~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 451 PLLQCLIEGLSAEP-R------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp HHHHHHHHHTTSCH-H------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred HHHHHHHHHHcCCH-H------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 77777777775531 0 01123445555555443 358
Q ss_pred hhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHhhcC-----------CCC----hh
Q 000049 2069 NFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----AS 2127 (2629)
Q Consensus 2069 ~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~~---~~~~~ll~~Ll~~l~-----------d~~----~~ 2127 (2629)
.||++.++|.|+..+.+. +..+|..+.++++.++...+. +++..+++.++..+. +++ +.
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 899999999999998654 467899999999999987764 335566666665543 222 45
Q ss_pred HHHHHHHHHHHHHHhch-hhhhhhHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhh
Q 000049 2128 IRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204 (2629)
Q Consensus 2128 vR~~a~~~L~~l~~~~~-~~~~~~~~~il~~Ll~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~ 2204 (2629)
+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~---------------- 643 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF---------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG----------------
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH----------------
Confidence 68899999999999888 8899999999999999998764 4788888888888765432211
Q ss_pred hhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC
Q 000049 2205 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283 (2629)
Q Consensus 2205 ~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2629)
..++..++|.+...+.+. ++++|..++.+++.++...| ..+.||+..+.+.++..+.+.
T Consensus 644 -------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 644 -------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp -------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCT
T ss_pred -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCc
Confidence 134556778888888886 88999999999999999988 679999999999999999762
Q ss_pred -CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHHHhc-c------
Q 000049 2284 -FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S------ 2344 (2629)
Q Consensus 2284 -~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~-----------~~vR~~Aa~aLg~l~~~-~------ 2344 (2629)
.+.++|..++.+++.++..+|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. .
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3578999999999999999999999999999999999887542 27999999999877432 1
Q ss_pred ----CChhHHHHHHHHhh----hcC--CHHHHHHHHHHHHHHHhhcCC-CcChHH-HHHHHHHHHH-hhcCCCHHHHHHH
Q 000049 2345 ----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVSA 2411 (2629)
Q Consensus 2345 ----~~~~~ll~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~a 2411 (2629)
+.+.++++.++..+ .++ +..+|..++.+|+.++...|. .+ .++ .+.++..+.. .+.++++.+|.+|
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 23556666666554 455 689999999999999998877 54 344 4455655555 8889999999999
Q ss_pred HHHHHHHHhcC
Q 000049 2412 ASILGIMSQCM 2422 (2629)
Q Consensus 2412 a~~Lg~L~~~~ 2422 (2629)
+.++|.+.+..
T Consensus 863 ~~a~~~~~~~~ 873 (876)
T 1qgr_A 863 RWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988643
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.8e-31 Score=370.17 Aligned_cols=565 Identities=18% Similarity=0.217 Sum_probs=443.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
..+..+++.+.+ +++..|..|+..|+.++..+|+.... ..+++.|.+.+ ++ ++.+|..+..+++.+....+. ..
T Consensus 10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~ 83 (588)
T 1b3u_A 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GG
T ss_pred CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HH
Confidence 346677777764 46899999999999999888765543 36888888776 43 788998888888776665543 24
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
+...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 5667888888888999999999999999999998887765 456666666666778899999999999988766543
Q ss_pred hccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh-HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhh
Q 000049 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
..+.++|.+..+++|+++.||.+|+++|+.+++.++.+. ...+
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l------------------------------------ 204 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI------------------------------------ 204 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHH------------------------------------
Confidence 346788999999999999999999999999998766422 2333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~ 1654 (2629)
+|.+...+.|.++.+|..+..+++.++...+. ..+.+.++|.+...+.|++|.||..++.+++.++...|++.
T Consensus 205 ---~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 277 (588)
T 1b3u_A 205 ---IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI 277 (588)
T ss_dssp ---HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH
T ss_pred ---HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc
Confidence 44444555555667777777777777665432 12445677777777788888888888888888887776542
Q ss_pred -chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-----HHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc
Q 000049 1655 -FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2629)
Q Consensus 1655 -~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g 1728 (2629)
...++|.+...+.++ ...+|..++.+++.++..+|.+ +++.++|.+...+.++++.+|..++.+++.++..+|
T Consensus 278 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 356 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356 (588)
T ss_dssp HHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC
T ss_pred chhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 356677777766544 3557777888888888777654 457788888888999999999999999999999988
Q ss_pred cchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhc
Q 000049 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2629)
Q Consensus 1729 ~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~ 1807 (2629)
... +.+.++|.+...+.|++++||..+..++..+...++.. ..+.++|.+...+.|.+|++|..+++.++.+...+
T Consensus 357 ~~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~- 433 (588)
T 1b3u_A 357 KDN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL- 433 (588)
T ss_dssp HHH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-
T ss_pred HhH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc-
Confidence 743 45678899999999999999999999999998877654 34668999999999999999999999998876432
Q ss_pred CCCccccccCCCCCCcccHHHHHHHHHHHhchhh-HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHH
Q 000049 1808 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886 (2629)
Q Consensus 1808 ~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~L 1886 (2629)
|.+. .+.+++.+...+.|.+..||..|+.+++.++...+.. .+++.+
T Consensus 434 ------------------------------~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l 481 (588)
T 1b3u_A 434 ------------------------------GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATI 481 (588)
T ss_dssp ------------------------------CGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHT
T ss_pred ------------------------------CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHH
Confidence 2211 1245666666788999999999999999998866543 346778
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
+|.+...+.++++.+|..+..+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~ 558 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSE 558 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHH
Confidence 888888888999999999999999999988765 5788999999999999999999999999999877765432 257
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000049 1966 LIPTIRTALCDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1966 ll~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2629)
++|.+...+.|+|++||..|..+++.+
T Consensus 559 ~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 559 VKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 788888888999999999999999865
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.98 E-value=5e-29 Score=345.64 Aligned_cols=566 Identities=18% Similarity=0.223 Sum_probs=446.9
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2629)
+..++..+.++++.+|..|.+++..++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456778889999999999999998887655421 1233 344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000049 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2629)
Q Consensus 1580 ~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~-~~l 1658 (2629)
.+.... +.++++|..+...++.++..++. ..|...+++.+...+.|+++.||..|..+++.++...+++.. ..+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444333 44567888888888877765443 246677888888888889999999999999999987775432 345
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~i 1738 (2629)
+|.+..... ++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLAG-GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 565544444 34566788888888888888877667888999999999999999999999999999988873 466789
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccC
Q 000049 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2629)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~-~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~ 1817 (2629)
+|.+...+.|++..||..|..++..+....+.. ..+.++|.+...+.|++|++|..+++.+|.+....
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------- 273 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV----------- 273 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH-----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999988877654 34568888888889999999999999999886432
Q ss_pred CCCCCcccHHHHHHHHHHHhchh-hHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHh--hhHHHHHHHHHHHh
Q 000049 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2629)
Q Consensus 1818 ~~ede~~~~~~~~~~l~~~Lg~e-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~~l~~Ll~~L~~~L 1894 (2629)
|.+ ....+++.+...+.|.++.||..|...++.++...+.... .+++.+++.+...+
T Consensus 274 --------------------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 274 --------------------GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp --------------------CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred --------------------CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 111 1223555565667899999999999999999987765432 57788889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHH
Q 000049 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2629)
Q Consensus 1895 ~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2629)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.+....+.+. +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988866 467889999999999999999999999999887766542 446788888899
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchh
Q 000049 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2629)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~ 2052 (2629)
+.|+++++|..++.+++.+...+|...+ +.++|.++..|.++... ++..
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999998887654 45678888777665421 1112
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHhhcCCCChhHHHH
Q 000049 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2629)
Q Consensus 2053 ~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~~~~ll~~Ll~~l~d~~~~vR~~ 2131 (2629)
+..+++.++..+|.. .+++.++|.+.+.+.+++..+|..+..+++.+...++. .....+++.+...+.|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 345666666666653 35688999999888889999999999999999887654 346788999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000049 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2629)
Q Consensus 2132 a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~ 2181 (2629)
++.+++.++...+.++.. +.+++.+..+++|.|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~~--~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhhH--HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 999999999876654422 467777777889999999999999998763
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=7.8e-22 Score=269.77 Aligned_cols=311 Identities=26% Similarity=0.475 Sum_probs=281.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--cCc
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLF 1414 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~--~~~ 1414 (2629)
..++.+++.+..++ ...|+.++..++.++.+-+........+++.+.+.+.++++. ++|+.++..+++..+ ..+
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc
Confidence 34455666665544 567899999999998865433332347889999999887655 999999999997665 468
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCchhh
Q 000049 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
+||+..++|.++..++|....||++|..++..++..++++.++.++|.++..|.+. .|+.|.+++.+++.++..+|+++
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999765 69999999999999999999999
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2629)
..++|+++|.+.+++.|.+++|+.+|..++..++..+.|.++..++|.|++++.+| +.+.+|++.|..++|+..++.|.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~ 248 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPAT 248 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHH
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999 45889999999999999999999
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000049 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1574 l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
++.++|.|.++|.+++..+++.++-++.|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+++..+.+..+.
T Consensus 249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999998764 6899999999999999886554
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=2.6e-18 Score=249.71 Aligned_cols=645 Identities=12% Similarity=0.121 Sum_probs=402.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcC--C
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~--~ 1126 (2629)
+++.++|.+++|||+.+| |+++|++... .|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-----~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLET-----QDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHT-----STTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhc-----CCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 9999987631 1333333334332 2334566777764 4586321 1
Q ss_pred CCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000049 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2629)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 1200 (2629)
.++++ + ..+++.+.+++..+|++++++++.++. .||+.|++++..+.+.. .. .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23322 4 678888888889999999999999876 58888888888887652 11 122578899999
Q ss_pred HHHhhhhcCC---C-Ch-h-----------HHHHHHH--hhhcCCCcH---HHH--HHHHHHHHHHHHhh---C-----c
Q 000049 1201 LHSAADVLRT---K-DL-P-----------VIMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH---G-----R 1249 (2629)
Q Consensus 1201 l~~l~~~~~~---~-~~-~-----------~i~~~li--~~~l~d~~~---~Vr--~~~~~a~~~~i~~~---g-----~ 1249 (2629)
+..+++.+.. . +. . .++..+. .+++.+... .+| ..++.++..++... + .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 1 10 1 1112221 122444322 244 12222222222211 1 1
Q ss_pred cchhhhHHHHHHHhcccCC--Ch-------hhhhhHHHHHHHHHHHHHhhh-ccCCCcchhhHHHHHhhcC-----CCcH
Q 000049 1250 DNVSLLFPIFENYLNKKAS--DE-------EKYDLVREGVVIFTGALAKHL-AKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2629)
Q Consensus 1250 ~~~~~Ll~~~~~~l~~~~~--~~-------~~~~~vr~~~v~~~~~La~~l-~~~~~~l~~i~~~L~~~L~-----~~~~ 1314 (2629)
+++...++.|...+....+ .. .....+|..++..+..+...+ +.-.++++.+++.+++.+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 3455667777777754211 00 122346666666666665432 2224566777777776664 3345
Q ss_pred HHHHHHHHhhhhhHhhhc--cch--HHHHHHHH-----HHhh----------------------cCCCHHHHHHHHHHHH
Q 000049 1315 AVQRAVSSCLSPLMQSMQ--DEA--PTLVSRLL-----DQLM----------------------KSDKYGERRGAAFGLA 1363 (2629)
Q Consensus 1315 ~Vq~~~~~~L~~l~~~~~--~~~--~~ll~~ll-----~~L~----------------------~~~~~~~R~~Aa~~L~ 1363 (2629)
.+...+.+.+..++..-. ... ...++.++ ..+. .++.+..|+.|..+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 666555555544432110 000 12222222 2221 1223578999999999
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHh-----c-c------CchhHHHHHHHHHH
Q 000049 1364 GVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2629)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~Al~al~~La~~~-----~-~------~~~~~v~~ilp~ll 1426 (2629)
.++...|...+. .+++++.+.+. ...+|+.|++|+++++.++++. + . .+.+++ ...++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l---~~~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF---TKEIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH---HHHTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH---HHHhH
Confidence 999988854443 57788777775 1237999999999999998742 1 1 233332 23344
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhh-----------Cchh
Q 000049 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2629)
Q Consensus 1427 ~~l~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~-----------~p~~ 1492 (2629)
..+.|+ ++.||.+++.+++.+.+.+.+.....++|.++..|.+++.+++..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 455666 99999999999999999888777899999999999988899999999999998873 2456
Q ss_pred hhhhccchHHHHhhhhcCCC---HH--HHHHHHHHHHHHhhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000049 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2629)
Q Consensus 1493 l~~~L~~ivp~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2629)
+.++++.+++.++.+++... +. ....+..|++.++...++ |++..+++.+...+.
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~----------------- 604 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT----------------- 604 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHH-----------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------------
Confidence 88899999999999887641 12 346778888887776553 444445544443321
Q ss_pred ccccCChhhhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~L~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...+
T Consensus 605 ------------------~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 605 ------------------IMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp ------------------HHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred ------------------HHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 1111 12445666788888888876 344567888999999999999877778888899999
Q ss_pred HHHHhhhC--CCCchhhHHHHH--HHhccCCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1644 ~~l~~~~g--~~~~~~ll~~Ll--~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+.+..... .+++..++|.+. ..+.... ........+..++...+.... +.++..+.+.+.+.. .++.++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 98887652 125566777776 4444332 112233344444433332211 222222223333333 358899
Q ss_pred HHHHHhhhhhccc-hHhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHH
Q 000049 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~iv 1765 (2629)
.+++.++..+|.. |.||++.+++.+++.+... .+..+...+..+..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999999999988 9999999999999998765 3455544444444443
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.84 E-value=1.9e-16 Score=231.87 Aligned_cols=725 Identities=14% Similarity=0.156 Sum_probs=437.0
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCC
Q 000049 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYD 1127 (2629)
Q Consensus 1057 ~~~~~ll~~-~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~ 1127 (2629)
+++.++|++ ..++|+..|++|++.|++.... |....+...+ ...+.+..+|.+|. ..|...+.+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457778888 4568999999999999876421 2222233332 22355666676654 347655433
Q ss_pred CCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000049 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2629)
Q Consensus 1128 ~~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 1202 (2629)
-++.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++.+..+.+... ...+. ..+...+......|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~----~~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQ----AEDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHC----C-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHh----hhccC-CCcHHHHHHHHHHHH
Confidence 33335 667776654 368999999999999865 688888888888887642 10000 001135667777777
Q ss_pred HhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHH
Q 000049 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2629)
Q Consensus 1203 ~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~ 1282 (2629)
.+++.+..... ...|... ++..=....+.+++++...+..... ...++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~----~~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSS----PSCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTC----CHHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCC----chHHHHHHHH
Confidence 77653321111 0001000 0100012455677777777754221 1225555544
Q ss_pred HHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhc-cchHHHHHHHHHHhh----------cCCC
Q 000049 1283 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSDK 1351 (2629)
Q Consensus 1283 ~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~-~~~~~ll~~ll~~L~----------~~~~ 1351 (2629)
.+....+ ++........+++.+.+.+. .++++..+.+|+..++.... ......+..++..+. ..+|
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 4433222 21111112567777777775 45688888899888875321 111222222222111 1123
Q ss_pred HHHHHHHHHHHHHHHhhhCc---------chhhhhcHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHHh--------
Q 000049 1352 YGERRGAAFGLAGVVKGFGI---------SSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL-------- 1410 (2629)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~---------~~l~~~~i~~~L~~~l~~----~~~~~~R~~Al~al~~La~~~-------- 1410 (2629)
.......+..+..++..... ..+. .+++.+.++..+ ..+...+..++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 33444444555544432111 1111 455556555553 123445556666666666532
Q ss_pred ---ccCchhHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhh----c
Q 000049 1411 ---GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----E 1468 (2629)
Q Consensus 1411 ---~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L----~ 1468 (2629)
...+.|++.++++.++..+.-++. ..|.++.+++..+........+..+++.+.+.+ .
T Consensus 380 ~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 459 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE 459 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCC
Confidence 134567888888888887743221 236677778888877777666666777666666 6
Q ss_pred cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCC
Q 000049 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTD 1548 (2629)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d 1548 (2629)
+.+|+.+.+++.+++.++++........++.+++.+.. +.++++.||..++++++++++.+...
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~--------------- 523 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH--------------- 523 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC---------------
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC---------------
Confidence 67999999999999999998766555667777775544 34468999999999999998765311
Q ss_pred CChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHh
Q 000049 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2629)
Q Consensus 1549 ~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2629)
...+..+++.+..++.+ +.++..|+.++.+++.... +.+.||++.++..+...+
T Consensus 524 ----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 524 ----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp ----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHh
Confidence 01233345555555544 5788889999999997543 468899999999999988
Q ss_pred cC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----cCCChHHHH---HHHHHHHHHHHhhCh----
Q 000049 1629 VD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVERS---GAAQGLSEVLAALGT---- 1691 (2629)
Q Consensus 1629 ~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~----~~~~~~~R~---~a~~~L~~i~~~~g~---- 1691 (2629)
.. -....|..+.+++|.++...+++ ++..+++.+...+. +..+...+. ....+++.+++.++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 85 35789999999999999877622 45566655555443 221222232 455667777777652
Q ss_pred -----------------h----HHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC
Q 000049 1692 -----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1692 -----------------~----~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
+ .++.++|.+.+.+.. .+..+.+.++.++..++..+|..|.||++.+++.++.....
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 1 235566666655432 46789999999999999999999999999999888776543
Q ss_pred CChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhc-------cCCCchHHHHHHHHHHHHHHHhhcCCCcccccc
Q 000049 1749 ENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2629)
Q Consensus 1749 ~~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~-------l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~ 1816 (2629)
... ...+..+..++..++.. .+..++..+... ..++...+|.+...+++.++...+...
T Consensus 738 ~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~------ 808 (963)
T 2x19_B 738 IPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF------ 808 (963)
T ss_dssp SCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG------
T ss_pred CCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH------
Confidence 211 12445556666644332 222222222211 122356688889999988886654221
Q ss_pred CCCCCCcccHHHHHHHHHHHhchhh-HHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh--hh----HhhhHHHHHHH
Q 000049 1817 GGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMNT 1889 (2629)
Q Consensus 1817 ~~~ede~~~~~~~~~~l~~~Lg~e~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~--~~----l~~~l~~Ll~~ 1889 (2629)
+.... +..++..+..++...+..+..++++.|..++...+ .. +.++.+.++..
T Consensus 809 --------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 868 (963)
T 2x19_B 809 --------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIA 868 (963)
T ss_dssp --------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHH
T ss_pred --------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 00111 33445555555667778899999999999987543 12 23556677777
Q ss_pred HHHHhcC
Q 000049 1890 LISSLAS 1896 (2629)
Q Consensus 1890 L~~~L~~ 1896 (2629)
++..+.+
T Consensus 869 l~~~l~~ 875 (963)
T 2x19_B 869 VLEAIGG 875 (963)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 7666654
No 14
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.84 E-value=1.8e-17 Score=242.31 Aligned_cols=717 Identities=12% Similarity=0.125 Sum_probs=416.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCCCC
Q 000049 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~~~ 1128 (2629)
+++.++|+.+.+||+..|++|++.|++.... |....+...+ ...+.+..+|.+|. ..|...+.+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4567788888999999999999999887521 2222233332 23355666776654 3476554333
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000049 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2629)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 1203 (2629)
++.+ ..+++.+.+ ....+|++.+++++.++. .|| .|++.+..+.+...... . +.. ++...+......+..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~--~-~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQR--M-PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccc--c-ccC-CCHHHHHHHHHHHHH
Confidence 3335 667776654 368999999999999865 577 88888888877653210 0 000 112366777777777
Q ss_pred hhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCC--ChhhhhhHHHHHH
Q 000049 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2629)
Q Consensus 1204 l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~--~~~~~~~vr~~~v 1281 (2629)
+++.+... . -.++...++..+ ....+.++++|..++..... .+.....++..++
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~l------------~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAEI------------AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHHH------------HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 76432100 0 011111222111 12345566666666643211 1111224666666
Q ss_pred HHHHHHHh--hhccCCCcchhhHHHHHhhc----------------CCCcHHHHHHHHHhhhhhHhhhc-cc----hHHH
Q 000049 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2629)
Q Consensus 1282 ~~~~~La~--~l~~~~~~l~~i~~~L~~~L----------------~~~~~~Vq~~~~~~L~~l~~~~~-~~----~~~l 1338 (2629)
..++.... .++.. ....+++.+.. + .+++++++..+.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66665555 23222 33456666665 4 12467899999999998886422 11 1233
Q ss_pred HHHHHHHhh------cCCCH---HHHHHHHHHHHHHHhhhCc--------------chhhhhcHHHHHHHHhcC----CC
Q 000049 1339 VSRLLDQLM------KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2629)
Q Consensus 1339 l~~ll~~L~------~~~~~---~~R~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~l~~----~~ 1391 (2629)
++.+++... ..+|. ......+..+..+...... ..+ ..+++.+.++... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 343333211 12232 4444455555555432110 111 1345555555433 22
Q ss_pred CHHHHHHHHHHHHHHHHHh---------c---cCchhHHHHHHHHHHHHcCCC--------C-------HHHHHHHHHHH
Q 000049 1392 SAKRREGALLAFECLCEKL---------G---RLFEPYVIQMLPLLLVAFSDQ--------V-------VAVREAAECAA 1444 (2629)
Q Consensus 1392 ~~~~R~~Al~al~~La~~~---------~---~~~~~~v~~ilp~ll~~l~D~--------~-------~~VR~aa~~al 1444 (2629)
+..++..++..+..+++.. . ..+.|++..+++.++..+.-+ + ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 4566777777777776632 1 234677888888888876311 1 14677888888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc-----CChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh-cCCCHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2629)
..++..++...+..+++.+.+.+.+ .+|+.+.+++.+++.++++++......++.+++.+..+. .|+++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877756667777776666654 789999999999999999877766677788888444443 2679999999
Q ss_pred HHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHH
Q 000049 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2629)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~ 1598 (2629)
++++++++++.+... ...+..++|.+..++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~-------------------------------------~~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN-------------------------------------PAYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------------------------------------HHHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999776521 012233444444455 2 467888999
Q ss_pred HHHHHhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----c
Q 000049 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2629)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~----~ 1668 (2629)
++.++++..+ ..+.||++.++..+...+.. .....+..+.++++.++...+.+ ++..+++.++..+. +
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 46889999999999999987 35789999999999999887633 34555555554333 2
Q ss_pred CC-ChHHHHH---HHHHHHHHHHhhCh----------------hHHHhHhHHHHHhhcC--CChhhHHHHHHHHHHhhhh
Q 000049 1669 DN-SNVERSG---AAQGLSEVLAALGT----------------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2629)
Q Consensus 1669 ~~-~~~~R~~---a~~~L~~i~~~~g~----------------~~l~~llp~l~~~l~~--~~~~vR~~a~~~l~~L~~~ 1726 (2629)
.. +...+.. ....++.++..++. ..++.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 2222333 33445555555442 1245677776666543 3678999999999999999
Q ss_pred hccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhh
Q 000049 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2629)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~ 1806 (2629)
+|.+|.||++.+++.++..+..... ..++..+..++..++.+. .++....+.+..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHH---
Confidence 9999999999999999988765322 224455555554443310 00000000011100
Q ss_pred cCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhh---ccCccHHHHHHHHHHHHHHHhcChhhHh--h
Q 000049 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2629)
Q Consensus 1807 ~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~ 1881 (2629)
..++..+..+ ..+..+.+++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0011111000 1122467899999999999998887765 6
Q ss_pred h-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000049 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2629)
Q Consensus 1882 ~-l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~ 1915 (2629)
. ++.+++..+..+..++......+...+..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888776666666777788776655
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.82 E-value=1.1e-15 Score=222.39 Aligned_cols=711 Identities=10% Similarity=0.101 Sum_probs=417.1
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-cC--
Q 000049 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2629)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~-~~-- 1209 (2629)
..+|....++|+.+| |.+.+..+ +..|+.+..++..+.+ . ..+-++|..++..|+..... ..
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~-------~-----~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS-------T-----NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 345555567777777 55555444 5667665544433321 0 12236788888888877532 21
Q ss_pred -------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHH
Q 000049 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2629)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~ 1282 (2629)
+++...+-..++ .++.+....||..+..++..+......+.|++++|.+.+.++..+ ...+++++.
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122223444443 333334588999999998888877656789999998887775422 235677888
Q ss_pred HHHHHHhhhcc--CCC----c----chhhHH-------HHHhhcCCCcH---HHH------HHHHHhhhhhHhh-hc---
Q 000049 1283 FTGALAKHLAK--DDP----K----VHAVVD-------KLLDVLNTPSE---AVQ------RAVSSCLSPLMQS-MQ--- 1332 (2629)
Q Consensus 1283 ~~~~La~~l~~--~~~----~----l~~i~~-------~L~~~L~~~~~---~Vq------~~~~~~L~~l~~~-~~--- 1332 (2629)
.+..+.+.+.. ..+ . +...++ .+...+.++.. .++ ..+.+++..+... ..
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 88888775532 111 1 112222 22223554422 122 2344444332210 01
Q ss_pred -cchHHHHHHHHHHhhcC--------C--C----HHHHHHHHHHHHHHHhhhCcchhh-hhcHHHHHHHHhc----CCCC
Q 000049 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLA----DRNS 1392 (2629)
Q Consensus 1333 -~~~~~ll~~ll~~L~~~--------~--~----~~~R~~Aa~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~----~~~~ 1392 (2629)
+.....++.++..+... + + +..|+.+..+|..++...+..... -..+++.+.+.+. ...+
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 305 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKY 305 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 11233444444444221 0 0 356778888888888655432210 0134444444443 1234
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCch--hHHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLG--RLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECAA 1444 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~--~~~~--~~v~~il-p~ll~~l~-----------------------D~~~~VR~aa~~al 1444 (2629)
...+..++..+..+++.-. ..|. +++.+++ +.++..+. +....+|.+|...+
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 5667777777776664221 3444 7888888 66666542 11125788899999
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhc------cCChhhhHHHHHHHHHHHhhC--ch-hhhh--hccchHH----HHhhhhc
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ--CLPKIVP----KLTEVLT 1509 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~la~~~--p~-~l~~--~L~~ivp----~L~~~L~ 1509 (2629)
..++...+...+..+++.+.+.+. +.+|+.|.+++.++|.++... +. .... .+.++.+ .+...+.
T Consensus 386 ~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~ 465 (960)
T 1wa5_C 386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLT 465 (960)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhc
Confidence 999888876666677777766665 678999999999999998632 21 1111 1113322 3455567
Q ss_pred CC---CHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhc
Q 000049 1510 DT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2629)
Q Consensus 1510 D~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~ 1586 (2629)
|+ ++.||..|+++++++++.+....+.. ++|.+.+++.
T Consensus 466 ~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L~ 506 (960)
T 1wa5_C 466 SNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFLQ 506 (960)
T ss_dssp CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHTT
T ss_pred CCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHhC
Confidence 77 99999999999999998653222333 3444455555
Q ss_pred CCCHHHHHHHHHHHHHHhhhcC---------CCCcccchHhhhHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhhCC
Q 000049 1587 ERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---PE--VRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~~--VR~~A~~aL~~l~~~~g~ 1652 (2629)
+.+..+|..|+.++.+++.... ....+.||++.+++.+..++.... +. ....+..+++.++...++
T Consensus 507 d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~ 586 (960)
T 1wa5_C 507 TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED 586 (960)
T ss_dssp CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence 5567889999999999887432 124588999999999999988741 11 446889999999998887
Q ss_pred C---CchhhHHHHHHHhcc----CCChHHHHHHHHHHHHHHHhhChh----HHHhHhHHHHHhhcCCChhhHHHHHHHHH
Q 000049 1653 E---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2629)
Q Consensus 1653 ~---~~~~ll~~Ll~~L~~----~~~~~~R~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~a~~~l~ 1721 (2629)
+ ++..+++.+...+.. ......+...+.+++.++...+++ ..+.++|.+...+........+.++..+.
T Consensus 587 ~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~ 666 (960)
T 1wa5_C 587 SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIA 666 (960)
T ss_dssp TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 6 455666666655542 333345556788898888876654 33667788777777666778888888888
Q ss_pred HhhhhhccchHhhHHhHHHHHH--hhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHH
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll--~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll 1799 (2629)
.+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...+.. +.. +
T Consensus 667 ~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~------------~~~--~---------- 719 (960)
T 1wa5_C 667 FVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI------------FPD--L---------- 719 (960)
T ss_dssp HHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG------------CSC--S----------
T ss_pred HHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH------------HHH--H----------
Confidence 888766 678889888998888 5555431 22 12223333222211110 000 0
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhh-
Q 000049 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT- 1878 (2629)
Q Consensus 1800 ~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~- 1878 (2629)
+.++..+.....+.. .+..|..+++.++.+.|..
T Consensus 720 -------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~ 754 (960)
T 1wa5_C 720 -------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNR 754 (960)
T ss_dssp -------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHH
T ss_pred -------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHH
Confidence 000110111111221 2367888888889888877
Q ss_pred HhhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccch-h--------hhHHH----HHhhhcCC-CChhHHHHH
Q 000049 1879 LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQGV 1943 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~-~~~~R~~A~~~L~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~a 1943 (2629)
+.+|++.+++.++..+... ....+......+..++-..++.. . ..+.. .+...+.. .+..-|.-+
T Consensus 755 ~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~ 834 (960)
T 1wa5_C 755 LRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIA 834 (960)
T ss_dssp HGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHH
Confidence 9999999999999998765 45555455555555444444321 1 11111 22222221 345667777
Q ss_pred HHHHHHHHHhh--chhhHHHhHHHHHHHHHHHhcC
Q 000049 1944 CIGLSEVMASA--GKSQLLSFMDELIPTIRTALCD 1976 (2629)
Q Consensus 1944 ~~aL~~li~~~--~~~~l~~~l~~ll~~l~~~L~d 1976 (2629)
+.+++.++... .+..+.+.+..++..+...+..
T Consensus 835 ~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 835 LIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 88888776543 1223334555566665555443
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=2.4e-17 Score=220.69 Aligned_cols=391 Identities=16% Similarity=0.241 Sum_probs=298.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhh-----------
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRG----------- 1649 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~----------- 1649 (2629)
..+.+.+..+|+.|.+.+..+... + .+.+...+...+.+. .+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 1 233455555555543 689999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh-HHHhHhHHHHHhhcCC--ChhhHHHHHHHHHH
Q 000049 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2629)
Q Consensus 1650 ----~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~-~l~~llp~l~~~l~~~--~~~vR~~a~~~l~~ 1722 (2629)
++++....+...++..+.++... . ..++.+++.++...++. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223344566677777766544 4 77888999998887664 6789999999999888 89999999999999
Q ss_pred hhhhh-ccchHhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc-----hhhhHHHHHhhccCCCchHHHHH
Q 000049 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1723 L~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~iv~~~~~~-----~i~~llp~l~~~l~d~~~~vR~s 1794 (2629)
++..+ +..+.+|++.+++.+..++.++ +..||..|++++..++..+... ..+.+++.+.+...+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6667899999999999999998 6899999999998765432211 12346777777788889999999
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH-HHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
++++++.+....+... + ++.. .+++.+.....|.+..||..|++.|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999998875432110 0 1112 344444445577888999999999999886
Q ss_pred cC---------------------hhhHhhhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchhhhHH
Q 000049 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2629)
Q Consensus 1874 ~~---------------------~~~l~~~l~~Ll~~L~~~L~~-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1925 (2629)
.. ...++++++.++|.++..+.+ .++..|..|..+|+.++...|..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123345678888888888853 34678999999999999999987889999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000049 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2629)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~ 2000 (2629)
|.+...++++++.+|.+++.+++.+...+.++.+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999988766555667788999999999999999999999999999999988763 3
Q ss_pred hhhhHHHHHHhc
Q 000049 2001 IDEIVPTLLHAL 2012 (2629)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2629)
+++++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555444
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.78 E-value=9.6e-14 Score=203.27 Aligned_cols=746 Identities=14% Similarity=0.121 Sum_probs=440.0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG---- 1649 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~---- 1649 (2629)
..+...+.......+++.|+.|.+.+..+-.. | ...+.+..++. +.++.+|..|+..|...+..
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p--------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P--------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T--------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H--------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence 33444444434456788999999999887552 1 12333334443 56789999999999887764
Q ss_pred hCCCCchhhHHHHHHHhccC--CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-----CChhhHHHHHHHHHH
Q 000049 1650 MGEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKY 1722 (2629)
Q Consensus 1650 ~g~~~~~~ll~~Ll~~L~~~--~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-----~~~~vR~~a~~~l~~ 1722 (2629)
+.++....+-..+++.+... .+..+|...+.+++.++....++.|+++++.+.+.+++ +++..++.++.+|..
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 23333344445555555442 24668889999999999887666788999999988765 366688899999998
Q ss_pred hhhhh-------------ccchHhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchh--hhHHHHHhhccC
Q 000049 1723 LPRSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIF 1785 (2629)
Q Consensus 1723 L~~~~-------------g~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~iv~~~~~~~i--~~llp~l~~~l~ 1785 (2629)
++... ...+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+.
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~ 251 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ 251 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC
Confidence 88532 223456677788888777765432 377777777765444 322222 446776666663
Q ss_pred CCchHHHHHHHHHHHHHHHhhcCCC-ccc-------ccc-------CCCCCCcccHHHHHHHHHHH-------h-----c
Q 000049 1786 NDNWRIRQSSVELLGDLLFKVAGTS-GKA-------LLE-------GGSDDEGASTEAHGRAIIEV-------L-----G 1838 (2629)
Q Consensus 1786 d~~~~vR~sa~~ll~~ll~~~~~~~-~k~-------~~~-------~~~ede~~~~~~~~~~l~~~-------L-----g 1838 (2629)
+|..|..+++++..++..-.+.. .+. ... ...++|.+......+.+... + .
T Consensus 252 --~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 329 (963)
T 2x19_B 252 --DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEH 329 (963)
T ss_dssp --STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccc
Confidence 57888999999888874211000 000 000 00011111111222222111 1 1
Q ss_pred hhhHHHHHHHHHhhcc-----CccHHHHHHHHHHHHHHHhcC-----------hhhHhhhHHHHHHHHHHHhcCCCH---
Q 000049 1839 RDKRNEVLAALYMVRS-----DVSLSVRQAALHVWKTIVANT-----------PKTLKEIMPVLMNTLISSLASSSS--- 1899 (2629)
Q Consensus 1839 ~e~~~~vl~~L~~~~~-----D~~~~VR~aA~~~l~~l~~~~-----------~~~l~~~l~~Ll~~L~~~L~~~~~--- 1899 (2629)
.+....++..+..+.. +.+..++..++..|..++... ...+.++++.+++.++..+..++.
T Consensus 330 ~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~ 409 (963)
T 2x19_B 330 WQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEY 409 (963)
T ss_dssp HHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 1222334444443333 234567888999999887621 133567888888888887753322
Q ss_pred ------------HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc----CCCChhHHHHHHHHHHHHHHhhchhhHHHhH
Q 000049 1900 ------------ERRQVAGRALGELVRKLGERVLPSIIPILSRGL----KDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2629)
Q Consensus 1900 ------------~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L----~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2629)
+.|..+..+|..++...+...++.+++.+...+ .+.++..+.+++.+++.+.+.+.. ...+++
T Consensus 410 ~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l 488 (963)
T 2x19_B 410 GFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVV 488 (963)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHH
Confidence 236677788888888878777788888777776 567899999999999998766543 224566
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh--hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccc
Q 000049 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041 (2629)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~--~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Li 2041 (2629)
+.+++.+. .+.++++.||..++.+++.+.+.++. ..+..+++.+++.|.++
T Consensus 489 ~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~-------------------------- 541 (963)
T 2x19_B 489 PGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNP-------------------------- 541 (963)
T ss_dssp HHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCG--------------------------
T ss_pred HHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCc--------------------------
Confidence 66776443 44556889999999999988765442 23444444444444321
Q ss_pred hhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC--CCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHh
Q 000049 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLK 2119 (2629)
Q Consensus 2042 p~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~--~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~ 2119 (2629)
.+...++.++..+++.++..+.||++.++..+...+.. -+...+..+.++++.++...+.
T Consensus 542 ------~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~------------ 603 (963)
T 2x19_B 542 ------ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV------------ 603 (963)
T ss_dssp ------GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH------------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH------------
Confidence 12223445555666555666667777666666665542 1334444444454444433221
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-----CCChhHHH---HHHHHHHHHHhhcCcccccc
Q 000049 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DSDSTTVA---AAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2120 ~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-----d~d~~V~~---~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
.+..+|+..+++.+...+. ..+++.+. ...++++.+++......-..
T Consensus 604 -------------------------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 604 -------------------------EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 3344444444444443321 12333333 45566666665543211000
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2192 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~--~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
.-.. .......+. .. + -........++|.+.+.+.. .+.++.+.++.+++.++...| +.+.||+
T Consensus 659 ~~~~--~~~~~~~~~------~~----~-~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~-~~~~~~l 724 (963)
T 2x19_B 659 DHEG--PELRKLPVP------QG----P-NPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL-DDFAPMV 724 (963)
T ss_dssp ----------------------C----C-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-STTGGGH
T ss_pred cccc--cccccCCCC------CC----C-CchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc-ccccccH
Confidence 0000 000000000 00 0 00012344567776666543 467899999999999999888 6789999
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH--hcCCCccCchHHHHHHHHHHc-----CC--CCHHHHHHHHHHHHHH
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR--KGGIALKPFLPQLQTTFIKCL-----QD--STRTVRSSAALALGKL 2340 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~--~~~~~l~p~lp~L~~~~~k~L-----~d--~~~~vR~~Aa~aLg~l 2340 (2629)
+.+..+++....... ....+.+++.++. +.+..+.++++++...++.+. .+ ..+++|......++.+
T Consensus 725 ~~~~~~l~~~~~~~~----~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~ 800 (963)
T 2x19_B 725 PQLCEMLGRMYSTIP----QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800 (963)
T ss_dssp HHHHHHHHHHHHHSC----CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHH
Confidence 988888777654321 1356677888877 555456677777666555542 34 3699999999999998
Q ss_pred Hhcc-------CC-hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCC--c---ChHHHHHHHHHHHHhhcCC-CHH
Q 000049 2341 SALS-------TR-VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS--V---SSAVKIRVYSVLKDLVYHD-DDH 2406 (2629)
Q Consensus 2341 ~~~~-------~~-~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~--~---~~~~~~~i~~~L~~~l~~~-~~~ 2406 (2629)
.... +. +..+++.++..++..+..+..++++.+..++...+.. . -..+...++..+...+.+. ...
T Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 801 LKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp HHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 6532 33 6778888888888888999999999999999765411 1 1233445554444444432 222
Q ss_pred HHHHHHHHHHHHHhcCC
Q 000049 2407 VRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~ 2423 (2629)
.....+.+|..+....+
T Consensus 881 ~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 881 LMDCFADILFALNKHCF 897 (963)
T ss_dssp GHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCh
Confidence 22345555555554433
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.77 E-value=6e-17 Score=216.82 Aligned_cols=395 Identities=13% Similarity=0.148 Sum_probs=291.7
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000049 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2629)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~l~~~--- 1207 (2629)
+..+|..+.++|+.+|+.|.+.+..+... .|+.+.. |...... . ..+..+|..++..|+.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~----L~~il~~------~--~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVE----LSRVLAN------P--GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC------T--TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHH----HHHHHHc------C--CCChHHHHHHHHHHHHhccccch
Confidence 35677888899999999999999876543 3444433 3332221 0 13458999999999987532
Q ss_pred ------------cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHhcccCCChhhhh
Q 000049 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2629)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~-~~~~~Ll~~~~~~l~~~~~~~~~~~ 1274 (2629)
++++....+...++ ..+.++++.+ ..+..++..+....+. ..|++++|.+...+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 22222334555553 4566777777 7777777777766544 489999998888776521 034
Q ss_pred hHHHHHHHHHHHHHhhhcc--CCCcchhhHHHHHhhcCCC--cHHHHHHHHHhhhhhHhhhccch-----HH-HHHHHHH
Q 000049 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLD 1344 (2629)
Q Consensus 1275 ~vr~~~v~~~~~La~~l~~--~~~~l~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~l~~~~~~~~-----~~-ll~~ll~ 1344 (2629)
.+|++++..++.+++.+.. ..+++..+++.+...+.++ ++.||..+.+++..++..+.+.. .. +++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6899999999999876522 2566778899999999998 79999999999988765443211 12 233333
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------------
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~------------ 1410 (2629)
.+..+.+..+|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445567899999999999999866532111 12 5777777777776 7889999999999988763
Q ss_pred ---------ccCchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhh
Q 000049 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2629)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2629)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456788999999988853 3457999999999999998886666888999999999999999
Q ss_pred hHHHHHHHHHHHhhCc-hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-----hhHHhHHHHHHhcc
Q 000049 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2629)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l 1546 (2629)
|.+++.+++.++.++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ +++..++|.++..+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788999999999999999999999999999999987764 46677777777655
No 19
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.76 E-value=6.4e-15 Score=215.92 Aligned_cols=752 Identities=11% Similarity=0.084 Sum_probs=420.4
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HH
Q 000049 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DI 1120 (2629)
Q Consensus 1049 ~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~ 1120 (2629)
++..-..-.++.++|+++++|++..|++|++.|++.... |.....+..+. ..+.+..+|.+|. ..
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhh
Confidence 344444556888999999999999999999999876421 22233333332 2245666676654 34
Q ss_pred HhhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000049 1121 WDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2629)
Q Consensus 1121 w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1189 (2629)
|...+.+.++.+ ..++..+.+. +..+|++.+++++.++. .||+.|++.+..+.+... .
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------- 149 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------
Confidence 765443333345 6677766542 47899999999999875 589889988888887641 0
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCC
Q 000049 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2629)
Q Consensus 1190 ~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~ 1269 (2629)
+...+.....+|..+++.+..-.. .+....-|....+. +. .....+++.+...+... .
T Consensus 150 ~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~~----l~----~~~~~i~~~~~~~l~~~-~- 207 (1049)
T 3m1i_C 150 SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKNS----MS----KEFEQIFKLCFQVLEQG-S- 207 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHC-C-
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHHH----HH----HHHHHHHHHHHHHHHhc-C-
Confidence 113567777778777754332100 00111111111111 11 12445666666666542 1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhh-ccc-------hHHHHHH
Q 000049 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSR 1341 (2629)
Q Consensus 1270 ~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~-~~~-------~~~ll~~ 1341 (2629)
...++..++..++....+.+.....-..+++.+.+.+. .+++++..+.+|+..++..- ++. ...+++.
T Consensus 208 ---~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 208 ---SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 23466666666655544443110001234444442221 26789999999998887552 111 1122233
Q ss_pred HHHHhhc-----------------CCCHHHHHHHHHHHHHHHhhhC-----cchhhh--hcHHHHHHHHhcCCCCHHHHH
Q 000049 1342 LLDQLMK-----------------SDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRRE 1397 (2629)
Q Consensus 1342 ll~~L~~-----------------~~~~~~R~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~l~~~~~~~~R~ 1397 (2629)
+++.+.. ..+.......+..+..+..... ...... ..+++.+..+.... +...+.
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~ 362 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFK 362 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 3332211 1122333344444443332211 000110 13456666665555 677788
Q ss_pred HHHHHHHHHHHHh------ccCchhHHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHH
Q 000049 1398 GALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMS 1449 (2629)
Q Consensus 1398 ~Al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~~ 1449 (2629)
.++..+..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..+..
T Consensus 363 ~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~ 442 (1049)
T 3m1i_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1049)
T ss_dssp HHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc
Confidence 8888888887732 2456788899999998876311 1 1446677788888875
Q ss_pred hhcHHhHHhhHHHHHhhhc--cCChhhhHHHHHHHHHHHhhCchhhh-hhccchHHHHhhhhc-----CCCHHHHHHHHH
Q 000049 1450 QLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQT 1521 (2629)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~~ 1521 (2629)
..+...+..+++.+-+.+. +.+|+.+.+++.++|+++.+...... .+++.+++.+..+.. |+++.||..+++
T Consensus 443 ~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMY 522 (1049)
T ss_dssp HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 5554455666666666664 36899999999999999877655433 347888888777543 567888888999
Q ss_pred HHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000049 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2629)
Q Consensus 1522 aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~ 1601 (2629)
+++++++.+.+. ...+..+++.+..++.+.++.++..|+.++.
T Consensus 523 ~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 523 VVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999998654321 1123344555556666667788888888888
Q ss_pred HHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCChHH
Q 000049 1602 NMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVE 1674 (2629)
Q Consensus 1602 ~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~-~~~~~ll~~Ll~~L~~~~~~~~ 1674 (2629)
+++...+. +.++.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------- 638 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------- 638 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH-------
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 88875432 1233599999999999999887777778889999999987763 222223322222111
Q ss_pred HHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC-Chh-hHH--HHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC
Q 000049 1675 RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1675 R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~-vR~--~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
+.+..+.. ...+...+. ++. ++. ..+.++..++..+|..|.|+++.+++.++..+..
T Consensus 639 -----~~~~~~~~------------~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~-- 699 (1049)
T 3m1i_C 639 -----MAWDTIVE------------QSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA-- 699 (1049)
T ss_dssp -----HHHHHHHH------------HHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHHH------------HHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--
Confidence 00111110 000000000 111 122 3356778888899999999988777765432211
Q ss_pred hhHHHHHHHHHHHHHHHhhhc--------hhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCC
Q 000049 1751 ESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~--------~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede 1822 (2629)
. ...+...+...+.. ....+.|.+. .++.......
T Consensus 700 -----~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~---------------~ll~~~~~~~---------------- 742 (1049)
T 3m1i_C 700 -----V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEIL---------------KLVETYISKA---------------- 742 (1049)
T ss_dssp -----H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHH---------------HHHHHHHHHC----------------
T ss_pred -----H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHHH---------------HHHHHHHHhC----------------
Confidence 0 00000000000100 0011111111 1122211110
Q ss_pred cccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHH-HHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHh----c--
Q 000049 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A-- 1895 (2629)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L----~-- 1895 (2629)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 -~~l~~~----~~----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~ 813 (1049)
T 3m1i_C 743 -RNLDDV----VK----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD 813 (1049)
T ss_dssp -SCHHHH----HH----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -CCHHHH----HH----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 000000 00 0111122111111000000100 345667777777666667777777777766663 2
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000049 1896 -SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2629)
Q Consensus 1896 -~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2629)
+..+++|......++.++......+ ...++.....++..+++.+...++..+.+++...
T Consensus 814 ~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 814 FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4679999999999999998765543 2334444455677778888888877777766543
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.74 E-value=8e-14 Score=189.38 Aligned_cols=675 Identities=13% Similarity=0.086 Sum_probs=420.0
Q ss_pred CChhhHHHHHHHHHHhhhh-hccchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhchh---hh-HHHHHh
Q 000049 1708 QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL---PL-LLPAVE 1781 (2629)
Q Consensus 1708 ~~~~vR~~a~~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~~~i---~~-llp~l~ 1781 (2629)
.+.+-|+.|+.-+..+++. .|.+. =|-..-+..+.+.+.. .++++.-+|++.+..+++....... .. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 3455666666666666643 22211 1122334555666665 6788999999999998876533321 11 245666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc--CccHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~--D~~~~ 1859 (2629)
+.+..++...-.++..++..++..++|...+.. .-.+ +.++..-. ...+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPD--------KELCTRNN-REIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCC--------HHHHHHTH-HHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCc--------HHHHhhhh-hHHHHHHHHHHHHhhccccChh
Confidence 777777888888888889888887765422110 0011 11221111 122334444443333 35678
Q ss_pred HHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhc------CC--------CHHHHHHHHHHHHHHHHHhc-----cc
Q 000049 1860 VRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLA------SS--------SSERRQVAGRALGELVRKLG-----ER 1919 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~------~~--------~~~~R~~A~~~L~~lv~~~~-----~~ 1919 (2629)
.|.++++.+-..+.... +....++. ...+.+.|. +. .++.|..+.-++..+...++ +.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 99999998877664331 11111111 112222221 11 45799999999999998887 33
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000049 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2629)
+...+-..+...+...+.+.+..+++++..++.......-.-+ ....++.+...+..+++.++..|.++++..+..-..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~ 323 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHH
Confidence 4455555566666677888888889999887654322111112 247889999999999999999999999986532111
Q ss_pred --hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC-----CChh-h
Q 000049 1999 --QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG-----PGLN-F 2070 (2629)
Q Consensus 1999 --~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g-----~~l~-~ 2070 (2629)
...+.-+|.|...+.+++.. ++.+++.+|..++...+ ..+. .
T Consensus 324 R~~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 324 AKALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHTTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhc
Confidence 01122246666666543311 01112223333322111 1111 1
Q ss_pred hHhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhccc-cc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch
Q 000049 2071 HLGTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2629)
Q Consensus 2071 ~l~~il~~Ll~~L~~~--~~~vr~~a~~al~~l~~~~~~-~~-~--~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~ 2144 (2629)
-+..+++.+.+.|.++ +++++..+.+++..+....+. .. . ..+++.|+..++++++.++..++.+|+++.....
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 2466788888888766 788999999999888653321 11 1 3578888888888899999999999999987431
Q ss_pred h-----------hh-------------hhhH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccc
Q 000049 2145 L-----------YL-------------VDEA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2629)
Q Consensus 2145 ~-----------~~-------------~~~~---------~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2629)
. .+ .++. ...++.|+.++..+++.+++.|..+|..+.... +
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~---- 527 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E---- 527 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H----
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H----
Confidence 0 00 0111 146788999999999999999999999996421 1
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhh--ch
Q 000049 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE--FV 2269 (2629)
Q Consensus 2192 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p--~v 2269 (2629)
.++.+.. ...+|.++..+.++++..|+.|+.+|+.++....+...-+ .+
T Consensus 528 ----~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 528 ----LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp ----HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred ----HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 1111110 1246778888889999999999999999997765433211 12
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc-h-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCC-
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF-L-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR- 2346 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~-l-p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~- 2346 (2629)
...++||++.+....+...+..++.+|..|...-+. .+.. + ...++.+...+.++++.+|..|+.+++.++.....
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 457899999987432334456788888887653111 1100 0 12355667777788999999999999999653211
Q ss_pred ---h--hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000049 2347 ---V--DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2629)
Q Consensus 2347 ---~--~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2629)
+ ...++.|+..+...+..+|..+++||..+........ .... ...++.|..++.+.++.++..++.+++.++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1 2467788888888889999999999999986422211 2222 346678888999999999999999999988
Q ss_pred hcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcC---CChhHHHhHHHHh
Q 000049 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD---EKFPLREASTKAL 2496 (2629)
Q Consensus 2420 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~---~~~~ir~~a~~al 2496 (2629)
.. +++. ...+.. . .+++.|+..++. .+..+++.|..|+
T Consensus 737 ~~-s~e~----~~~l~e------------------------------~----G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 737 NA-GEEI----AKKLFE------------------------------T----DIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp TT-CHHH----HHHHHT------------------------------S----THHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred hC-CHHH----HHHHHH------------------------------C----CCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 63 2211 111110 0 123344444432 3678889999999
Q ss_pred HHHHhhhh
Q 000049 2497 GRLLLHQI 2504 (2629)
Q Consensus 2497 g~ll~~~~ 2504 (2629)
..++.+..
T Consensus 778 ~~ll~~g~ 785 (810)
T 3now_A 778 AAAERYRI 785 (810)
T ss_dssp HHHHHHHT
T ss_pred HHHHhCCC
Confidence 99888764
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.72 E-value=8.6e-14 Score=203.54 Aligned_cols=694 Identities=10% Similarity=0.049 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~l~~~----~g~~~~~~ll~~L 1662 (2629)
.+...|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 4456777787777765331 123333444443 46789999999999887763 3333334444455
Q ss_pred HHHhccC--CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC------ChhhHHHHHHHHHHhhhhhc-cc---
Q 000049 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2629)
Q Consensus 1663 l~~L~~~--~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~------~~~vR~~a~~~l~~L~~~~g-~~--- 1730 (2629)
++.+... .+..+|...+.+++.++....+ .|+++++.+.+.++++ ++..++.++.+|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5544432 2456888999999999888766 7888999998887664 56678888888887775221 10
Q ss_pred --------hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000049 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2629)
Q Consensus 1731 --------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~-~l~d~~~~vR~sa~~ll~~ 1801 (2629)
+..+++.+++.+...+. .... ...+..|.++..++++++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~-------------------------------~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLK-------------------------------LQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHH-------------------------------HHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------cccCCCCCccchhHHHHHHHHHHH
Confidence 00111111111111110 0000 0011135777777777777
Q ss_pred HHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHh---------------hccCccHHHHHHHHH
Q 000049 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2629)
Q Consensus 1802 ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2629)
++.. .... .+ . ...+++.++. +..+.+..+|..|++
T Consensus 216 ~~~~-~~ip-----------~~-~----------------~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-G----------------CVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-G----------------HHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-c----------------cccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6542 0000 00 0 0112222221 012245679999999
Q ss_pred HHHHHHhcCh-----hhHhhhHHHHHHHHHH---HhcCCCH---HHHHHHHHHHHHHHHHhcc--------------chh
Q 000049 1867 VWKTIVANTP-----KTLKEIMPVLMNTLIS---SLASSSS---ERRQVAGRALGELVRKLGE--------------RVL 1921 (2629)
Q Consensus 1867 ~l~~l~~~~~-----~~l~~~l~~Ll~~L~~---~L~~~~~---~~R~~A~~~L~~lv~~~~~--------------~~l 1921 (2629)
++..++...+ ..+..+++.++...-. .+.+.+. +.....++.+..+...... ..+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999987532 1233333433332211 2233332 4444455555555432111 123
Q ss_pred hhHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHhh-----------chhhHHHhHHHHHHHHHHHhcCC--------
Q 000049 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALCDS-------- 1977 (2629)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~aL~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~d~-------- 1977 (2629)
..+++.+..... ..+.++...++.....+.... ....+.+++..+++.+...+.-+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 344555554432 246778888887766654421 11344677788888887766311
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCC-
Q 000049 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL- 2049 (2629)
Q Consensus 1978 d~-------~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~- 2049 (2629)
++ ..|..+..++..++...|....+.+++.+-+.+.... .. .+..
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~-----------~~~w~ 479 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH-----------PTHWT 479 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC-----------TTCCH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC-----------CCcHH
Confidence 11 3455666666666665554444444444333332100 00 0011
Q ss_pred -chhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHhhcCCC
Q 000049 2050 -SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDN 2124 (2629)
Q Consensus 2050 -~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l~~~~~--~~~~~~ll~~Ll~~l~d~ 2124 (2629)
......+++++++.......++++.+++ ++..+. +.++.+|..++++++.+...+. .+++..+++.++..+ +
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C-
Confidence 1123445666655444444567888888 444444 4589999999999999987664 367899999999988 4
Q ss_pred ChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcccc----cchHHHHHH
Q 000049 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEVQ----PSYIKVIRD 2198 (2629)
Q Consensus 2125 ~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~l----~~l~~~l~~ 2198 (2629)
+.++..|+.++..|++..+..+.+|++.++..+...++. .+...+..+.++++.++...+.+.. ..++.++.+
T Consensus 557 -~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999899999999999999999986 4678899999999999887653221 122222222
Q ss_pred HHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcC--CHHHHH---HHHHHHHHHHhhcC------------
Q 000049 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELRE---QAALGLGELIEVTS------------ 2261 (2629)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~--~~~~r~---~aa~~L~~l~~~~~------------ 2261 (2629)
.+.. .+.+. +++.+. .+..+|+.++...+
T Consensus 636 ~l~~----------------------------------~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~ 681 (971)
T 2x1g_F 636 ELQA----------------------------------ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPI 681 (971)
T ss_dssp HHHH----------------------------------HHTC---CHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHH----------------------------------HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccC
Confidence 2211 11111 122222 23344444444332
Q ss_pred hhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000049 2262 EQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2629)
Q Consensus 2262 ~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l 2340 (2629)
++.+.++...+.+.+..++... .+.++...++.+++.++...|..+.||+|++.+.++..+..... ..+...++.+
T Consensus 682 ~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~ 758 (971)
T 2x1g_F 682 VQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTA 758 (971)
T ss_dssp --CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 2356778888888877777543 25689999999999999999999999999999999998877422 2356666666
Q ss_pred Hhc-cC------ChhHHHHHHHH----hhhc-------CCHHHHHHHHHHHHHHHhhcCCCcC-hHH-HHHHHHHHHHhh
Q 000049 2341 SAL-ST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLV 2400 (2629)
Q Consensus 2341 ~~~-~~------~~~~ll~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l 2400 (2629)
+.. +. .+..++..+.. .+.. .+++++.....-+..++......+. .+. .+.++......+
T Consensus 759 i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 759 IVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence 442 21 13344443332 2222 2588999999999998887665442 355 677888877777
Q ss_pred cCCCHHHHHHHHHHHHHHHhc
Q 000049 2401 YHDDDHVRVSAASILGIMSQC 2421 (2629)
Q Consensus 2401 ~~~~~~vr~~aa~~Lg~L~~~ 2421 (2629)
...+.....++..++..+...
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 766655666677777665544
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.70 E-value=5.4e-13 Score=181.31 Aligned_cols=671 Identities=14% Similarity=0.110 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH-HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ 1492 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v-~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~ 1492 (2629)
-+.+++..++. ...+..=|+.|..-+-.++..-.+. -+ ..-+..+.+.+++ ++.....+++.+|..+++..+..
T Consensus 7 kv~~m~~i~~~--~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 7 KVKQMMDLTFD--LATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHHHHHHHS--SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcc--cccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 35566666655 2333456667766666655431111 11 2224455555666 67888999999999999887665
Q ss_pred hhhhccch-HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc------------------hhHHhHHHHHHhccCCCCh--
Q 000049 1493 LSQCLPKI-VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------------------PEIASLVPTLLMGLTDPND-- 1551 (2629)
Q Consensus 1493 l~~~L~~i-vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~------------------~~i~~lvp~Ll~~l~d~~~-- 1551 (2629)
...-+..+ +|.+...+...++++-.+++.+++.+...+.. .+++.++..|+..+.+..-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 43333332 57788888888999999999999887765431 1345556666666665532
Q ss_pred hHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC
Q 000049 1552 HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630 (2629)
Q Consensus 1552 ~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d 1630 (2629)
..| .+++.+.+ .+++.+...... |..+.....++ .++..+.+ .+| +.-+ .
T Consensus 165 ~~r~~~~~~~~~--~~~~~~~~~~~~-------------~~~~~g~~~~l-~v~~~~~~----~~~-~~~~--------~ 215 (810)
T 3now_A 165 AARDGVIELITR--NVHYTALEWAER-------------LVEIRGLCRLL-DVCSELED----YKY-ESAM--------D 215 (810)
T ss_dssp HHHHHHHHHHHH--HTTCTTTTHHHH-------------HHHTTHHHHHH-HHHTCCSS----SCC-SSCC--------C
T ss_pred hhHHHHHHHHHH--hCCccccccccc-------------hhhHhhHHHHH-HHHhcCcc----ccc-cccC--------C
Confidence 234 34444432 111111000000 11111111111 12211111 011 0000 1
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh---hHH--HhHhHHH
Q 000049 1631 PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYF--EHILPDI 1701 (2629)
Q Consensus 1631 ~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~---~~l--~~llp~l 1701 (2629)
-.+++|..+.-++..+.+.++-+ .+.+.+..++..............++++++.++.+... ..+ +..+|.+
T Consensus 216 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~l 295 (810)
T 3now_A 216 ITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMI 295 (810)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHH
Confidence 25689999999999999988732 34444444444333344455566788888888764322 222 5788999
Q ss_pred HHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh---------hc
Q 000049 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2629)
Q Consensus 1702 ~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~---------~~ 1771 (2629)
+..+.+++..+++.+..+++.++.. .....++ ..-+|++...+..+++.+|.-|+.++..+..... ..
T Consensus 296 i~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 296 LAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 9999999999999999999987654 3233332 2234888888888888899988888877753221 12
Q ss_pred hhhhHHHHHhhccCCC--chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHH
Q 000049 1772 SLPLLLPAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2629)
Q Consensus 1772 ~i~~llp~l~~~l~d~--~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L 1849 (2629)
.+..++|.+.+.+.++ +..+|..+++.+..+... . .....+... ...++.|
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-----------------~----~vk~~lv~d------~g~Ip~L 426 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-----------------A----ECKEKLIED------KASIHAL 426 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-----------------H----HHHHHHHHC------HHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-----------------c----HHHHHHHHc------cchHHHH
Confidence 3556788888887776 677899999988887311 0 011112111 1245555
Q ss_pred HhhccCccHHHHHHHHHHHHHHHhcChh----------------------------hH----hhhHH-HHHHHHHHHhcC
Q 000049 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK----------------------------TL----KEIMP-VLMNTLISSLAS 1896 (2629)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~~~----------------------------~l----~~~l~-~Ll~~L~~~L~~ 1896 (2629)
+..+...+..+...|..+++.++..... .. +.++. ..+|.++..+.+
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 5555555677889999999999874410 00 11111 357889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHH--HhHHHHHHHHH
Q 000049 1897 SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL--SFMDELIPTIR 1971 (2629)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~--~~l~~ll~~l~ 1971 (2629)
+++.+|..|+++|+.++...... +....+|.|...+.+.++..|..++.+|+.+.....+.... ......+|.+.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv 586 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL 586 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH
Confidence 99999999999999997421111 22346777777777888899999999999987655443321 11235788888
Q ss_pred HHhcCC-cHHHHHHHHHHHHHHHHHhCh---hhh-hhhHHHHHHhccCcCc--hhHHHHHHHHHHhhhccCcCcccchhh
Q 000049 1972 TALCDS-ILEVRESAGLAFSTLFKSAGM---QAI-DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHILPKL 2044 (2629)
Q Consensus 1972 ~~L~d~-d~~VR~~A~~al~~l~~~~g~---~~~-~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2629)
..+... +...+..|+.++..+...... ..+ ...+|.|.+.|.++.. +..|+..+..++
T Consensus 587 ~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa--------------- 651 (810)
T 3now_A 587 NLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV--------------- 651 (810)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT---------------
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh---------------
Confidence 888643 455566788888877642110 111 1335555555544321 223333333332
Q ss_pred hcCCCchhHHHHHHHHHHHhCCC-hhhhH--hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc--cc-H--HHHHHH
Q 000049 2045 VHLPLSAFNAHALGALAEVAGPG-LNFHL--GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EG-V--ESLVSE 2116 (2629)
Q Consensus 2045 ~~~~~~~~~~~aL~~La~~~g~~-l~~~l--~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~-~--~~ll~~ 2116 (2629)
. +.. ...+. ...++.|+..+..++..+|..+.+++..+...... .. + ...++.
T Consensus 652 -----------------~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 652 -----------------M--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp -----------------T--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred -----------------C--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 1 111 11122 25788999999889999999999999998763211 11 2 246778
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHh
Q 000049 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDS---DSTTVAAAWEALSRVVA 2182 (2629)
Q Consensus 2117 Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~---d~~V~~~a~~aL~~l~~ 2182 (2629)
|...+.+++..+|..|+++++++....+ +...++ ...++.|..++.+. +..+++.|.++|..+.+
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMINAGE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999987543 222222 25678888887654 68899999999999875
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=2.8e-14 Score=195.16 Aligned_cols=469 Identities=13% Similarity=0.130 Sum_probs=297.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2629)
.+.+.+.++ +...|..+..++..+++..+ .....+++.+.+.+.|+++.+|..|..++..+ ..+.....++|
T Consensus 53 ~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~~ 124 (591)
T 2vgl_B 53 DVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLCE 124 (591)
T ss_dssp HHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHHH
Confidence 344456554 67777777776766665432 22334456666677778888887665554443 24444566777
Q ss_pred HHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch----hHHh
Q 000049 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIAS 1537 (2629)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ 1537 (2629)
.+.+.+.+.++.+|+.|+.+++.+....|+.+.. ..++|.+..+++|+++.|+.+|+.+|+.++..-++. ....
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 7777777777888888888888877766664432 357788888899999999999999999988654322 1234
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc-CCCCcccc
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMIP 1615 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~-~~~~~l~~ 1615 (2629)
.++.+++.+.+.++..+ ..++.+.. +. ..+......+++.+...+++.++.++..|+.++..+...+ .+++.+..
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 45566666655555444 34444432 22 1233445678888888889999999999999999886533 12233444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHH
Q 000049 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2629)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~ 1695 (2629)
..+.+.+.+..++ ++++++|..|..+++.++...++ .+...+..++ .+.+++ ..+|..++..+..++. .+..+
T Consensus 280 ~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~~---~~nv~ 352 (591)
T 2vgl_B 280 LLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLAS---QANIA 352 (591)
T ss_dssp HHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTCC---SSTHH
T ss_pred HHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHCC---hhhHH
Confidence 4566777777655 47899999999999999886443 2222222111 222333 5678777766665543 23456
Q ss_pred hHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh
Q 000049 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2629)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~ 1775 (2629)
.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+..+.++..+..++..++..++... ..
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~-~~ 427 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY-ES 427 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC-CT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH-HH
Confidence 778888888888899999999999988887654 3445667777778888888888777766666655443210 01
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccC
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D 1855 (2629)
.++.+.+.+. .+
T Consensus 428 ~v~~L~~~l~--------------------------------------------------------------------~~ 439 (591)
T 2vgl_B 428 IIATLCENLD--------------------------------------------------------------------SL 439 (591)
T ss_dssp THHHHHHTTT--------------------------------------------------------------------TC
T ss_pred HHHHHHHHHH--------------------------------------------------------------------hc
Confidence 1111111110 12
Q ss_pred ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC-
Q 000049 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD- 1934 (2629)
Q Consensus 1856 ~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d- 1934 (2629)
....+|..++.++|.+....+. .+.+++.+.+.+.+.+..+|..+..++..+....++...+.+...+.....|
T Consensus 440 ~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~ 514 (591)
T 2vgl_B 440 DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDS 514 (591)
T ss_dssp CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcC
Confidence 3455667777777766554432 2344555555666677888888888888887665543334444444444444
Q ss_pred CChhHHHHHHHHHH
Q 000049 1935 PSASRRQGVCIGLS 1948 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~ 1948 (2629)
.++++|..++..+.
T Consensus 515 ~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 515 DNPDLRDRGYIYWR 528 (591)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHH
Confidence 67899988876554
No 24
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.70 E-value=8.5e-13 Score=187.82 Aligned_cols=782 Identities=11% Similarity=0.084 Sum_probs=425.1
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------
Q 000049 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2629)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~-------- 1118 (2629)
+.++.+.++-+.+.++++.+.+|++..|.+|++.|++.... |....+...+.. .+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQILQ--FSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHH
Confidence 34455566778899999999999999999999999876421 222233333332 234456665553
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~----~-----~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2629)
..|...+.+-++.+ ..+++.+.+ + ...+|++.+.+++.++. .||+.|++.+..+.+...
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~---------- 148 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS---------- 148 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----------
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----------
Confidence 45875543333334 556654432 2 46789999999999865 789999998888887631
Q ss_pred CCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccC
Q 000049 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2629)
Q Consensus 1188 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~ 1267 (2629)
.+...+......+..+++.+..- . -.+-...-|....++... .++.+++++...+....
T Consensus 149 -~~~~~~~~~L~iL~~L~EEV~~~----------~--~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 149 -SSVNVCENNMIVLKLLSEEVFDF----------S--AEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHTS----------C--TTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHh----------h--hccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC
Confidence 11134555566666665543210 0 001111212222222211 14456666666665421
Q ss_pred CChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHH-hhcCCCcHHHHHHHHHhhhhhHhh-h-cc--chH----HH
Q 000049 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQS-M-QD--EAP----TL 1338 (2629)
Q Consensus 1268 ~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~-~~L~~~~~~Vq~~~~~~L~~l~~~-~-~~--~~~----~l 1338 (2629)
...+...+...++....+++...-.-..+++.+. ..+. +++.+.++++|+..++.. . ++ ... .+
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1234445555555555544321100134666666 6664 567999999999998863 2 22 122 22
Q ss_pred HHHHHHHh---------------hcCCCHHHHHHHHHHHHHHHhhhCcchhh------h-hcHHH----HHHHHhcCCCC
Q 000049 1339 VSRLLDQL---------------MKSDKYGERRGAAFGLAGVVKGFGISSLK------K-YGIAA----TLREGLADRNS 1392 (2629)
Q Consensus 1339 l~~ll~~L---------------~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~------~-~~i~~----~L~~~l~~~~~ 1392 (2629)
++..++.+ ...++.+ ..-..+++.+...+|..... . .+++. .|..+...+ +
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D--~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d 357 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGND--QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-E 357 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTH--HHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-C
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccch--HHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-c
Confidence 23333322 1111100 11233344444333321110 0 12322 344443333 4
Q ss_pred HHHHHHHHHHHHHHHHHhc------cCchhHHHHHHHHHHHHcCCCC---------------------HHHH-HHHHHHH
Q 000049 1393 AKRREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------VAVR-EAAECAA 1444 (2629)
Q Consensus 1393 ~~~R~~Al~al~~La~~~~------~~~~~~v~~ilp~ll~~l~D~~---------------------~~VR-~aa~~al 1444 (2629)
...=..++.....+++.+- ..+.|++.++++.++..+.-|. .... +..-+++
T Consensus 358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L 437 (1023)
T 4hat_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence 5443444444445655332 3478889999999998765332 0000 0112555
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhhc-----CCCHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQ 1516 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR 1516 (2629)
..+.....++.+..+++.+.+.+.+ .+|+.+.+++.++|+++.+... ....+++.++|.|+.++. |+++.||
T Consensus 438 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~ 517 (1023)
T 4hat_C 438 VYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVA 517 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHH
Confidence 5554444555567777777766654 6899999999999999987544 467889999999999886 5677889
Q ss_pred HHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHH
Q 000049 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596 (2629)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a 1596 (2629)
..+++++|++++.+... ...+..++..+..++.+.++++...|
T Consensus 518 ~t~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A 560 (1023)
T 4hat_C 518 SDIMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMA 560 (1023)
T ss_dssp HHHHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999998765411 11233344555566666667788888
Q ss_pred HHHHHHHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhccC
Q 000049 1597 AQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1597 ~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~-~~~ll~~Ll~~L~~~ 1669 (2629)
|.++.++|..... +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. ...++..|+..+..
T Consensus 561 ~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~- 639 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM- 639 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH-
Confidence 8888888875432 234468999999999998887788888999999999999887542 33333333322110
Q ss_pred CChHHHHHHHHHHHHHHHh--hChhHHHhHhHHHHHhhcCCChhhH--HHHHHHHHHhhhhhccchHhhHHhHHHHHHhh
Q 000049 1670 NSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQRASVR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~~--~g~~~l~~llp~l~~~l~~~~~~vR--~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2629)
.+..+... -++..+ .++ ..++ -..+.++..++..+|..|.|++..+++.+++.
T Consensus 640 -----------~~~~l~~~~~~~~~~~-----------~d~-~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 640 -----------AWDTIVEQSTANPTLL-----------LDS-ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQL 696 (1023)
T ss_dssp -----------HHHHHHHHHHHCTTGG-----------GCH-HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCchhh-----------cCH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 11111110 011110 000 0111 12345777888899999999999999888754
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCccc
Q 000049 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2629)
Q Consensus 1746 L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~ 1825 (2629)
..--.. .+...+..-|....+. | ..+++ -.+|.+.++++...+.+.. +
T Consensus 697 y~~~s~--------~i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~---- 744 (1023)
T 4hat_C 697 YRAVSS--------MISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N---- 744 (1023)
T ss_dssp HHHHHH--------HHHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----
T ss_pred HHHHHH--------HHHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----
Confidence 321111 1111111111110000 0 00000 0145556666666553311 0
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHhhccC-----ccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhc---CC
Q 000049 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SS 1897 (2629)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~---~~ 1897 (2629)
.+.....+ .+.++..+...-.. ....|-.....++..+.......+..++..+...-+..++ +.
T Consensus 745 ~~~~~~~~--------~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~ 816 (1023)
T 4hat_C 745 LDDVVKVL--------VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTE 816 (1023)
T ss_dssp HHHHHHHT--------HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHh--------HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccccc
Confidence 11111111 11111111111011 1233333333333333332223333344444444445555 36
Q ss_pred CHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchh--------hHHHh
Q 000049 1898 SSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--------QLLSF 1962 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~--------~l~~~ 1962 (2629)
+++.|..-.+.+..+...+... ....++..+.-+++.+.+++-..++..+.+++.++... -+..|
T Consensus 817 ~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~ 896 (1023)
T 4hat_C 817 YPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNY 896 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7999999999999988776543 23445566666778888888777777777776544321 11334
Q ss_pred HHHHHHHHHHHhcCC
Q 000049 1963 MDELIPTIRTALCDS 1977 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~ 1977 (2629)
+-.++..+...+.|.
T Consensus 897 ~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 897 FFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCc
Confidence 444444455555554
No 25
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.70 E-value=1.9e-12 Score=184.56 Aligned_cols=739 Identities=12% Similarity=0.105 Sum_probs=409.1
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHHHHHhhcCCCCCCC--
Q 000049 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTD-- 1131 (2629)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~w~~~~~~~~~~-- 1131 (2629)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+.......+...+-+|....+..=-.++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 34666677667777 789999999999876521 212222222221111125666766654443210022222
Q ss_pred ------h-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000049 1132 ------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2629)
Q Consensus 1132 ------~-~~Ll~~l~-----~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2629)
+ ..++..+. .....+|++.+.+++.++. .||+.|++.+..+.+..... +....-....
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~~L 150 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNFYL 150 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHHHH
Confidence 3 45555544 2467899999999999864 68888888888888765321 1001122233
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHhcccCCChhhhhhHH
Q 000049 1199 LALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2629)
Q Consensus 1199 ~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g-~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr 1277 (2629)
+.+..+.+.+....... ......++..++..+ .... ....+..+.++..+... ....++
T Consensus 151 riL~~i~EEv~~~~~~~------~~~~~~r~~~lkd~m--------~~~~~~~i~~~~~~iL~~~~~~------~~~~l~ 210 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLK------TDVQIQKDNLVKDAI--------RANDMSDIVSFVYEMMLAYSNA------KNYGTV 210 (980)
T ss_dssp HHHHHHHHHHCCCCSCC------CHHHHHHHHHHHHHH--------HHHTHHHHHHHHHHHHHHHHHT------TCHHHH
T ss_pred HHHHHhHHHHHhccccc------CHHHHhhhHHHHHHH--------HhccHHHHHHHHHHHHHHHhcc------CCHHHH
Confidence 33333334332221100 000000111112211 1110 00112223333333321 122344
Q ss_pred HHHHHHHHHHHhhhccCCCc---chhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc--hHHHHHHH--HHHh---h
Q 000049 1278 EGVVIFTGALAKHLAKDDPK---VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL--LDQL---M 1347 (2629)
Q Consensus 1278 ~~~v~~~~~La~~l~~~~~~---l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~--~~~ll~~l--l~~L---~ 1347 (2629)
..+ +.++..++.-.+.. -..+++.+.+.+.+ ++++.++++|+..++....+. ..+++..+ .+.+ .
T Consensus 211 ~~~---L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~ 285 (980)
T 3ibv_A 211 GLC---LQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQ 285 (980)
T ss_dssp HHH---HHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC--
T ss_pred HHH---HHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHh
Confidence 444 44444444321111 14677778888876 789999999999988664321 11222221 1111 1
Q ss_pred c-CCCHHHHHHHHHHHHHHHhh-----hCc------------chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000049 1348 K-SDKYGERRGAAFGLAGVVKG-----FGI------------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2629)
Q Consensus 1348 ~-~~~~~~R~~Aa~~L~~l~~~-----lg~------------~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~ 1409 (2629)
. .+|.+.+.+-++.+..+... ..+ ..+ ..+++.+..+..++ +..+-..++..+..+.+.
T Consensus 286 ~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 286 EQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 1 24445443333333222111 011 111 25677777777776 454444444444433332
Q ss_pred h---------ccCchhHHHHHHHHHHHHcCCC-----------C-----HHHHHHHHHHHHHHHHhhcHHhH-H----hh
Q 000049 1410 L---------GRLFEPYVIQMLPLLLVAFSDQ-----------V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2629)
Q Consensus 1410 ~---------~~~~~~~v~~ilp~ll~~l~D~-----------~-----~~VR~aa~~al~~i~~~l~~~~v-~----~i 1459 (2629)
. ...+.+++..+++.++..+.-+ + ...|+... .+..+...+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 1 2235678888898888866421 1 13566555 55555555555543 3 34
Q ss_pred HHHHHhhhc---cCChhhhHHHHHHHHHHHhhCchhh------hhhccchHHHHhhhhc-----CCCHHHHHHHHHHHHH
Q 000049 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1460 lp~Ll~~L~---~~~w~~r~~a~~~L~~la~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2629)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++||.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 444444452 4579999999999999999876532 2567888888888866 8999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHH--hhcCCCHHHHHHHHHHHHHH
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNM 1603 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~L~d~~~~vr~~a~~~l~~l 1603 (2629)
.++.+... +..+..+++.+.. ++.+++.++|..|+.++.++
T Consensus 522 ys~~~~~~-------------------------------------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 522 YASFFDYE-------------------------------------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp TGGGGGTC-------------------------------------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHhcC-------------------------------------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 99877521 0112223333444 55666678899999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCCC------Cch
Q 000049 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGEE------NFP 1656 (2629)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~VR~~A~~aL~~l~~~~g~~------~~~ 1656 (2629)
|+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+.. ++.
T Consensus 565 ~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 565 VKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp HHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 98754 36789999999888887762 1 1124667899999999877631 455
Q ss_pred hhHHHHHHHhc----cCCCh-HHH---HHHHHHHHHHHHhhCh---------hHHHhHhHHHHHhhc--CCChhhHHHHH
Q 000049 1657 DLVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYL 1717 (2629)
Q Consensus 1657 ~ll~~Ll~~L~----~~~~~-~~R---~~a~~~L~~i~~~~g~---------~~l~~llp~l~~~l~--~~~~~vR~~a~ 1717 (2629)
.+++.+++.+. ..... ..+ .....+++.+++++.. ..+.+.++.++..+. ..+..+|+.+.
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55555544432 22111 111 1345567777776631 244566777766665 46789999999
Q ss_pred HHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh---hHHHHHhhccCCCchHHHHH
Q 000049 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP---LLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~---~llp~l~~~l~d~~~~vR~s 1794 (2629)
.+|..+..++|.++.|+++.++..++..+.-.+ . ...+..++.++..|+.+..+ .+++.+...
T Consensus 723 ~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~----------- 788 (980)
T 3ibv_A 723 FTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDNMMEITNRMLPTLLMR----------- 788 (980)
T ss_dssp HHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999996554221 2 23566777788777765222 122222110
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhc
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2629)
+-.++.. ...++ + +. + | ...+|++-...+..++.+
T Consensus 789 ----if~~l~~-----------~~~~t--d---~~------------r------------~-~~~l~r~~~~fl~~i~~~ 823 (980)
T 3ibv_A 789 ----IFSSLSA-----------APQGT--D---DA------------V------------K-QNDLRKSYISFILQLLNK 823 (980)
T ss_dssp ----HHHHTTC---------------C--C---HH------------H------------H-HHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHhcC-----------CCCCc--H---HH------------H------------H-HHHHHHHHHHHHHHHHhC
Confidence 0011100 00000 0 00 0 0 012455555556655553
Q ss_pred C-hhhH-----hhhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---------hhhhHHHHHhhhcCCCC
Q 000049 1875 T-PKTL-----KEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---------VLPSIIPILSRGLKDPS 1936 (2629)
Q Consensus 1875 ~-~~~l-----~~~l~~Ll~~L~~~L~~-~~~~~R~~A~~~L~~lv~~~~~~---------~l~~llp~L~~~L~d~~ 1936 (2629)
. +..+ +.+++.++..++.+..+ ++...+..|...+.+++...|+. +.. ++|.......+++
T Consensus 824 ~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~ 900 (980)
T 3ibv_A 824 GFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPN 900 (980)
T ss_dssp TCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC--
T ss_pred CchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCC
Confidence 2 2222 35677777777765443 66778999999999999876531 234 6666655554443
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.66 E-value=1.3e-13 Score=188.61 Aligned_cols=501 Identities=15% Similarity=0.148 Sum_probs=342.7
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhhhccCCCc-chhh
Q 000049 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAV 1301 (2629)
Q Consensus 1223 ~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~~~~~~~~~vr~~~v~~~~~La~~l~~~~~~-l~~i 1301 (2629)
..+.+++...|..++.-.. .+...|.+.-..++.++ +.+.++ +..+|..+...+..+++. ++. ..-+
T Consensus 20 ~~L~~~~~~~k~~~~~kli-~~~~~G~d~~~~~~~vi-~l~~s~------~~~~Krl~yl~l~~~~~~----~~e~~~l~ 87 (591)
T 2vgl_B 20 AELNNEKKEKRKEAVKKVI-AAMTVGKDVSSLFPDVV-NCMQTD------NLELKKLVYLYLMNYAKS----QPDMAIMA 87 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHH-HHHHTTCCCGGGHHHHH-HTTSSS------CHHHHHHHHHHHHHHHHH----SHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHH-HHHHCCCChHHHHHHHH-HHhCCC------CHHHHHHHHHHHHHHccc----CchHHHHH
Confidence 4456666666655444333 23345665444444444 455432 244666665555555442 222 2445
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
+..+.+.+.++++.+|..+..+++.+. ..+-.+.+++.+...+. +.+..+|+.|+.++..+... +++.+....+++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 788889999999999999988887663 22223455666665554 56789999999999999984 344444346889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2629)
.+.+.+.++ ++.+|.+|+.+++.++..-+.. +.+.....++.++..+.+.++..+-....++..+... .+.....++
T Consensus 164 ~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l 241 (591)
T 2vgl_B 164 SLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSIC 241 (591)
T ss_dssp HHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHH
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 999999876 8999999999999988754432 2334456677777777778888776655554433211 223457889
Q ss_pred HHHHhhhccCChhhhHHHHHHHHHHHhh---CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~---~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+.+...+.+.++.++..++.++..+... .|+.+......+.+.+..++ ++++.||..|+.+|+.++...++ .+..
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH
Confidence 9999999999999999999999987642 34444444566777777655 47899999999999999876432 1222
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+..++...+|| ..+| .+++.+... . .......+++.+...+.+.++++|..+...++.++... .+.
T Consensus 320 ~~~~~~~~~~d~-~~Ir~~al~~L~~l--~---~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~------~~~ 387 (591)
T 2vgl_B 320 EIKVFFVKYNDP-IYVKLEKLDIMIRL--A---SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV------EQS 387 (591)
T ss_dssp CTTTTSCCTTSC-HHHHHHHHHHHHHT--C---CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC------HHH
T ss_pred HHHhheeccCCh-HHHHHHHHHHHHHH--C---ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC------hhH
Confidence 222233233455 6666 788877542 1 22345678888999999999999999999999998743 244
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHh
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~ 1696 (2629)
.+..++.+...+.+....++..+..+++.++...++ .....++.|.+.+.+......|..+++.+|+.+..... ...
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~ 464 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADE 464 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHH
Confidence 567888899999999999999999999999876554 34667788888887666666787888888887655432 245
Q ss_pred HhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhh-cCC-CChhHHHHHHHHHH
Q 000049 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGAGH 1762 (2629)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~-L~d-~~~~VR~~al~al~ 1762 (2629)
++..+.+.+.+.++.+|..++.++..+....+....+ .+..+++. ..| .+.+||+.|...++
T Consensus 465 ~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 465 LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 5566666666778899999999999988876654323 33334443 345 56799998865543
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.64 E-value=1.3e-11 Score=180.95 Aligned_cols=695 Identities=12% Similarity=0.086 Sum_probs=405.4
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000049 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2629)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~----~g~~~~~~ll~~Ll 1663 (2629)
.+...|+.|.+.+..+-.. + + ++..+...+. .+.++.+|..|+..|...+.. ++++....+-..++
T Consensus 28 p~~~~r~~Ae~~L~~~~~~---p-~---~~~~l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDN---P-D---AWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHS---T-T---GGGGHHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---c-h---HHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 3456899999999887542 1 2 2222222222 256789999999999887763 22222233444444
Q ss_pred HHhccCC--------ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhc-------
Q 000049 1664 DALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------- 1728 (2629)
Q Consensus 1664 ~~L~~~~--------~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g------- 1728 (2629)
..+.+.. ....|...++.++.++....++.|+++++.+++.++ .++..++.++.++..++....
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 4443321 245788888999999888767778899999999886 566678888888888885443
Q ss_pred ---------cchHhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch--hhhHHHHHhhccCCCchHHHHHHH
Q 000049 1729 ---------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2629)
Q Consensus 1729 ---------~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~iv~~~~~~~--i~~llp~l~~~l~d~~~~vR~sa~ 1796 (2629)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..++
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~ 255 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITL 255 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHH
Confidence 23556677777777777654 346788888888876654332111 0123333332111 1455677777
Q ss_pred HHHHHHHHhhcCCC-----c-------------------c-----ccccCCCCCCcccHHHHHHHHHH-------Hhc--
Q 000049 1797 ELLGDLLFKVAGTS-----G-------------------K-----ALLEGGSDDEGASTEAHGRAIIE-------VLG-- 1838 (2629)
Q Consensus 1797 ~ll~~ll~~~~~~~-----~-------------------k-----~~~~~~~ede~~~~~~~~~~l~~-------~Lg-- 1838 (2629)
+++..++..-.+.. . . .......+++.+-.....+.+.. .+.
T Consensus 256 ~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD 335 (1049)
T ss_dssp HHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77766654310000 0 0 00000011111111111111111 110
Q ss_pred ---hhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh------cChhhHhhhHHHHHHHHHHHhcCC------------
Q 000049 1839 ---RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA------NTPKTLKEIMPVLMNTLISSLASS------------ 1897 (2629)
Q Consensus 1839 ---~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~------~~~~~l~~~l~~Ll~~L~~~L~~~------------ 1897 (2629)
.+....++..+..+....+..|+..+++.|..++. .....+.++++.+++.++..+.-+
T Consensus 336 ~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 11222344444444444577899999999999987 233556788899999888877421
Q ss_pred -------C---HHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhchhhHHHhHHH
Q 000049 1898 -------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2629)
Q Consensus 1898 -------~---~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2629)
+ +..|..+..+|..++...+..+++.+.+.+...+. ..+|..+.+++.++|.+...+....-.++++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~ 495 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT 495 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH
Confidence 1 13466778888888876666678888888887775 36789999999999987665544433455777
Q ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhCh--hhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCc
Q 000049 1966 LIPTIRTALC-----DSILEVRESAGLAFSTLFKSAGM--QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2629)
Q Consensus 1966 ll~~l~~~L~-----d~d~~VR~~A~~al~~l~~~~g~--~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp 2038 (2629)
+++.+..... |+++.+|..++.+++++.+.+.. ..+..+++.+++.+.++..
T Consensus 496 v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~--------------------- 554 (1049)
T 3m1i_C 496 VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHE--------------------- 554 (1049)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCH---------------------
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH---------------------
Confidence 8887776432 35677777788888887765443 3455556666655544321
Q ss_pred ccchhhhcCCCchhHHHHHHHHHHHhCCChh--------hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc-cc
Q 000049 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2629)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~--------~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2629)
++...++.++..+++.++..+. ||++.++..+...+..-+........++++.++...+. +.
T Consensus 555 ---------~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 555 ---------GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1222355666666665555553 89999999888888766666667788899988876652 22
Q ss_pred ----HHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHH
Q 000049 2110 ----VESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2629)
Q Consensus 2110 ----~~~ll~~Ll~~l~--------d----~~~~-vR~--~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~ 2170 (2629)
+..+++.+...+. + .++. .+. ..+.++..++...+..+.++...++..++..+..
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~------ 699 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA------ 699 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------
Confidence 3444443332211 0 0221 222 3345667777777888888887777666544421
Q ss_pred HHHHHHHHHHHhhcCc--------ccccchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCC
Q 000049 2171 AAAWEALSRVVASVPK--------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS 2242 (2629)
Q Consensus 2171 ~~a~~aL~~l~~~~~~--------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~ 2242 (2629)
....+.......+. ..+....+.+.+.+...... ... +.. .....+.+++..++....+..
T Consensus 700 --~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~-----~~~---l~~-~~~~~~~~~l~~ll~~~~~~~ 768 (1049)
T 3m1i_C 700 --VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK-----ARN---LDD-VVKVLVEPLLNAVLEDYMNNV 768 (1049)
T ss_dssp --HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH-----CSC---HHH-HHHHTHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHh-----CCC---HHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 11111111111110 11112222222222221110 000 000 000112223333333332221
Q ss_pred HHHH-HHHHHHHHHHHhhcChhhhhhchhhhhHHHHHH----hcC--CCCHhHHHHHHHHHHHHHHhcCCCccCc----h
Q 000049 2243 AELR-EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF----L 2311 (2629)
Q Consensus 2243 ~~~r-~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~----l 2311 (2629)
+..| ..++.+++.++...| +.+.||++.+...+... +.+ ...++++...+..++.++.+++..+.+. +
T Consensus 769 ~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~ 847 (1049)
T 3m1i_C 769 PDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAF 847 (1049)
T ss_dssp GGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHH
T ss_pred cccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHH
Confidence 2111 357888999998888 67888888887666654 322 2468899999999999999887755331 3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 000049 2312 PQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2312 p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~ 2342 (2629)
..+....+.++..+++.+...+...+-.+..
T Consensus 848 ~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 848 KLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 4455666778888888888888888877643
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.61 E-value=1.5e-13 Score=183.09 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=266.7
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHH
Q 000049 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2629)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2629)
+|.+++.++++++.+|..|+.+|..+...-.++.++.++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 788888899999999999999999886532232221100 0 0135666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000049 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2629)
Q Consensus 1581 L~~~L~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--~-- 1654 (2629)
+.+.+.+. ++.+|..++.++.+++.. .++....+ -..++|.+..++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67777766 788999999999998762 11111111 2468999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhC----hhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g----~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
-...++.++..+.++.+...|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865567789999999999986542 2234678999999999999999999999999988643221
Q ss_pred hHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCC
Q 000049 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2629)
Q Consensus 1731 f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~ 1809 (2629)
..... ..++|.++..+.+++..+|..+..++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 23555666666555555555555554443221000
Q ss_pred CccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHH
Q 000049 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2629)
Q Consensus 1810 ~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~ 1888 (2629)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 01334444445667788999999999998876665544444 35777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhh-----
Q 000049 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2629)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~----- 1958 (2629)
.++..+.++++.+|..|+.+|+.++....+. +...++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888889999999999999998753222 124578888889999999999999999998876433211
Q ss_pred -HHHhHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000049 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2629)
..+|...+ ++.+...+.+++.++++.|..++..++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344333 566777777788889998888777665
No 29
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.61 E-value=1.4e-10 Score=165.17 Aligned_cols=817 Identities=12% Similarity=0.106 Sum_probs=431.5
Q ss_pred hHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhC
Q 000049 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMG 1651 (2629)
Q Consensus 1576 ~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~l~~~~g 1651 (2629)
.+...+...+.. .++..|+.|.+.+..+-+. + ........++.++ ++.+|-.|+..|...+..++
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s---p--------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~ 75 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRSS---S--------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWN 75 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS---T--------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC---h--------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 344444333432 3678899999999887653 1 1333444555443 68999999999988887666
Q ss_pred CC----CchhhHHHHHHHhcc----CCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCCh-hhHHHHHHHHHH
Q 000049 1652 EE----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKY 1722 (2629)
Q Consensus 1652 ~~----~~~~ll~~Ll~~L~~----~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~-~vR~~a~~~l~~ 1722 (2629)
++ ....+-..++..+.. ..+...|...+..++.++....++.|+.+++.+++.++..+. ..-...+..+..
T Consensus 76 ~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 76 NESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLS 155 (980)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 55 444455555555543 223457778888888888877666777777777776654322 111122222222
Q ss_pred hhhhhccchHhhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHH
Q 000049 1723 LPRSLGVQFQNYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2629)
Q Consensus 1723 L~~~~g~~f~p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ 1801 (2629)
+....... .+....+ .-|...+ ... +|... +..
T Consensus 156 i~EEv~~~--------------~~~~~~~~~~r~~~l---kd~--------------------------m~~~~---~~~ 189 (980)
T 3ibv_A 156 IGDEIADS--------------LVLKTDVQIQKDNLV---KDA--------------------------IRAND---MSD 189 (980)
T ss_dssp HHHHHCCC--------------CSCCCHHHHHHHHHH---HHH--------------------------HHHHT---HHH
T ss_pred hHHHHHhc--------------ccccCHHHHhhhHHH---HHH--------------------------HHhcc---HHH
Confidence 22211110 0000000 0010000 000 00000 000
Q ss_pred HHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhh
Q 000049 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2629)
Q Consensus 1802 ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~ 1881 (2629)
+ . +.++..+..+....+..++..++++++..+.-.|-.+-
T Consensus 190 i-------------------------------~--------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i- 229 (980)
T 3ibv_A 190 I-------------------------------V--------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLI- 229 (980)
T ss_dssp H-------------------------------H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHH-
T ss_pred H-------------------------------H--------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhh-
Confidence 0 0 00111111111224557889999999998875543221
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-h-hh-----hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHh
Q 000049 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-V-LP-----SIIPILSRGLK-DPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1882 ~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~-~-l~-----~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~ 1953 (2629)
.-+.+++.+...+.+ +..|..|+.||.+++.+.... . .+ .+.+.+..... +.|.+...+.|..+.++...
T Consensus 230 ~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 230 VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 115677888888865 789999999999999875432 1 11 11122222222 46677665555444332211
Q ss_pred ---h--ch--------hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---C-----hhhhhhhHHHHHHh-
Q 000049 1954 ---A--GK--------SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA---G-----MQAIDEIVPTLLHA- 2011 (2629)
Q Consensus 1954 ---~--~~--------~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~---g-----~~~~~~ilp~Ll~~- 2011 (2629)
. .+ ....+++..+++.+..++.+++.+|-..+...+..+.... . .....++++.|++.
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l 387 (980)
T 3ibv_A 308 LVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI 387 (980)
T ss_dssp HHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHH
Confidence 1 11 0223667789999999999998888877766665554321 1 12233444444433
Q ss_pred ---ccCcC----------chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCC-ChhhhHh-hhH
Q 000049 2012 ---LEDDQ----------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP-GLNFHLG-TIL 2076 (2629)
Q Consensus 2012 ---L~~~~----------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~-~l~~~l~-~il 2076 (2629)
+.-++ +.+..+..++.-+ ...+..++ +.|. .+..++- .+.
T Consensus 388 i~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l------------------------~~l~d~~~-~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 388 IKKMKYDESQEWDDDPDSEEEAEFQEMRKKL------------------------KIFQDTIN-SIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH------------------------HHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred HHHccCCCccccccccchhHHHHHHHHHHHH------------------------HHHHHHHH-hcChHHHHHHHHHHHH
Confidence 32111 1111111111111 11122222 2332 2233222 333
Q ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHHHhhccc---------ccHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHH
Q 000049 2077 PALLSAMG---DDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKGVG-----DNQASIRRSSAYLIGYF 2139 (2629)
Q Consensus 2077 ~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~~~---------~~~~~ll~~Ll~~l~-----d~~~~vR~~a~~~L~~l 2139 (2629)
+.+-+.+. +.++..++.+.-++..+...+.. ++++.+++.+...+. +..+.+|..++++++.+
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 34444443 24577889999998888776532 234455555555433 67899999999999998
Q ss_pred HHhchhhhhhhHHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhhhhhhhcCCccc
Q 000049 2140 YKNSKLYLVDEAPNMISTLIV--LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPIL 2217 (2629)
Q Consensus 2140 ~~~~~~~~~~~~~~il~~Ll~--ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 2217 (2629)
.+.... -..|++.+++.++. .+.+++..|+.+|+.++.++++.+++...+ +++.+.+.+...-.. . .
T Consensus 523 s~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~~~~il~~l~~lL~~------~---~ 591 (980)
T 3ibv_A 523 ASFFDY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-YTESSLAMLGDLLNI------S---V 591 (980)
T ss_dssp GGGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-SHHHHHHHTTGGGCC------C---C
T ss_pred HHHHhc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHhhcC------c---C
Confidence 776532 23678888888888 788889999999999999999988765433 333333333221000 0 0
Q ss_pred ccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcC--hhhhhhchhhhhHHHHHHhc----CCCCH-hHHH
Q 000049 2218 IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIG----DRFPW-QVKS 2290 (2629)
Q Consensus 2218 l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~----~~~~~-~vk~ 2290 (2629)
.+.-. +.+....+..+ ..++..+.+....+++|.++...+ ++.-..++..+.+|+++.+. ..... +-+.
T Consensus 592 ~~~~~-~~~~~~~~~~~---~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~ 667 (980)
T 3ibv_A 592 SPVTD-MDAPVPTLNSS---IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII 667 (980)
T ss_dssp CCCCC---CSSCCHHHH---HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH
T ss_pred CCCCc-ccccccchhhh---cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH
Confidence 01000 00111111111 122345567778999999997754 44566788888888776553 11111 1111
Q ss_pred ---HHHHHHHHHHHhcCCC---ccC---chHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHh-ccCChhHHHHHHHHhh
Q 000049 2291 ---AILSTLSIIIRKGGIA---LKP---FLPQLQTTFIKCLQD--STRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSL 2358 (2629)
Q Consensus 2291 ---~al~~L~~L~~~~~~~---l~p---~lp~L~~~~~k~L~d--~~~~vR~~Aa~aLg~l~~-~~~~~~~ll~~Ll~~l 2358 (2629)
..+.+++.+.+..+.. ..| .+.+..+.++..+.. .+..||.++..++.+++. +++.+.|++|.+++.+
T Consensus 668 ~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 668 SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 3455667777654321 122 233566667666663 489999999999999954 4455666666666665
Q ss_pred h-cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2359 Q-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVL----KDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2359 ~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L----~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
- .-+..--...+..++.++...|..+ .+....++..+ ...+..+.. | .+.+.. ..
T Consensus 748 l~~~~~~e~~~fL~l~~qli~~f~~~~-~~~l~~ll~~l~~~if~~l~~~~~----------~-------td~~r~--~~ 807 (980)
T 3ibv_A 748 LNSIDMNELVDVLSFISQLIHIYKDNM-MEITNRMLPTLLMRIFSSLSAAPQ----------G-------TDDAVK--QN 807 (980)
T ss_dssp HHHCCTTTHHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTC---------------------CCHHHH--HH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC----------C-------cHHHHH--HH
Confidence 3 2233335567889999999998875 33333333333 223332210 0 011110 00
Q ss_pred HHhhcCCCCchhhHhHHHHHHHHHhhCCcccc-C---ChhHHHHHHHHHhhhcC-CChhHHHhHHHHhHHHHhhhhh-c-
Q 000049 2434 LLNLASSPSWAARHGSVLVFATFLRHNPSAIS-M---SPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQ-S- 2506 (2629)
Q Consensus 2434 ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~-~---~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~-~- 2506 (2629)
..++..+..+..++..+-..++ . .+..+.++..+.....+ .++..++.|+..+.+++...+. .
T Consensus 808 ----------~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~ 877 (980)
T 3ibv_A 808 ----------DLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDG 877 (980)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC------
T ss_pred ----------HHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCc
Confidence 0122233344455554433333 1 23456677777755444 6788999999999999888643 2
Q ss_pred CCCCchhhHHHHHHHHhhcCCCCHHHHHH--------HHHHHHHHHhhCchhhhhhH-HHHHHH
Q 000049 2507 GPANTTVVVDILASVVSALHDDSSEVRRR--------ALSALKSVAKANPSAIMVHV-ALFGPA 2561 (2629)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~~~~~~vr~~--------al~~l~~~a~~~~~~v~~~l-~~l~p~ 2561 (2629)
-|+....+-++++.....+.+++.|.+-+ ....++.+..+.++....|| ..++|.
T Consensus 878 ~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~ 941 (980)
T 3ibv_A 878 IAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPT 941 (980)
T ss_dssp -CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred chHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCc
Confidence 35555666557777777777777776655 33444445445555544555 334443
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.60 E-value=1.4e-13 Score=183.47 Aligned_cols=350 Identities=13% Similarity=0.097 Sum_probs=253.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-Cc--chhhhh-cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GI--SSLKKY-GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1339 l~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~--~~l~~~-~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
++.+++.+. +++...|..|+.+|..++... .+ ...... .+++.+.+.+.+..++..|..|+.++..++.+.....
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 445555553 445677888888887776421 11 111122 6788888888776578999999999998886332211
Q ss_pred hhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhh
Q 000049 1415 EPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYC 1488 (2629)
Q Consensus 1415 ~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~ 1488 (2629)
...+ ...+|.++..+.++++.||+.|..++..+....+.. .+ ..++|.++..+.+ .++.++..++.+|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 2222 358999999999999999999999999987653222 11 3578999999985 7899999999999999976
Q ss_pred C-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccc
Q 000049 1489 A-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2629)
Q Consensus 1489 ~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2629)
. |..-......++|.+..++.+.++.||..++++|..++.... +... .+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~----------------------~~------- 230 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-DKIQ----------------------AV------- 230 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-HHHH----------------------HH-------
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-HHHH----------------------HH-------
Confidence 4 443333457899999999999999999999999999985321 0000 00
Q ss_pred cCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000049 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~l 1646 (2629)
....++|.+...+.+.++.+|..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+|+.+
T Consensus 231 -----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 231 -----IDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp -----HHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----HHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0113566777777788889999999999998763 211111111 25889999999999999999999999999
Q ss_pred HhhhCCC---Cc-hhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1647 IRGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1647 ~~~~g~~---~~-~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+....+. .. ..++|.++..+.+.. ..+|..++.+++.++.....+.. ..++|.+++.+.+.++.+|..++
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 8632211 11 367888888887654 55888999999999876443322 35789999999999999999999
Q ss_pred HHHHHhhhhh
Q 000049 1718 TLFKYLPRSL 1727 (2629)
Q Consensus 1718 ~~l~~L~~~~ 1727 (2629)
.++..++...
T Consensus 383 ~aL~~l~~~~ 392 (450)
T 2jdq_A 383 NGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988744
No 31
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.60 E-value=6.3e-11 Score=167.13 Aligned_cols=761 Identities=9% Similarity=0.071 Sum_probs=402.0
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------
Q 000049 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2629)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~-------- 1118 (2629)
+.++.+.++-..+++++..+.+|++..|.+|++.|++.... |........+. ..+.+..++-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTIL--EFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34455555667899999999999999999999999887521 22222222222 2234556665553
Q ss_pred HHHhhcCCCCCCCh-HhHHHhhcC---------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000049 1119 DIWDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2629)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~---------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2629)
..|...+.+-+..+ ..+++.+.+ .++.++++.+++++.++. .||+.|++.+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 34765543332334 556655432 367899999999999865 6888888888888876531
Q ss_pred CCCcchhhHHHHHHHHhhhhcCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHhcccC
Q 000049 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2629)
Q Consensus 1188 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~~ 1267 (2629)
+...+......|..+++.+..-... . + ...-|....++. . +.++.+++++...+...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~~--------~-l---~~~r~~~lk~~L----~----~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSSG--------Q-I---TQVKAKHLKDSM----C----NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHHH--------H-B---CHHHHHHHHHHH----H----HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcccc--------c-c---cHHHHHHHHHHH----H----HHHHHHHHHHHHHhccc-
Confidence 1134566667777776554321100 0 0 011112222221 1 12566777777777542
Q ss_pred CChhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHH-HhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHH-
Q 000049 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ- 1345 (2629)
Q Consensus 1268 ~~~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L-~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~- 1345 (2629)
. ...+...+...+++...+++...-.-..+++.+ ...+. +++++.++++|+..++..-.+...+.+..+++.
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 233445556677777766643211113456666 35554 568999999999998865222222333333322
Q ss_pred ---h---h-cCCCHHH--------HHHHHHHHHHHHhhhCcchhh---h--------hcHHHHHHHHhcCCCCHHHHHHH
Q 000049 1346 ---L---M-KSDKYGE--------RRGAAFGLAGVVKGFGISSLK---K--------YGIAATLREGLADRNSAKRREGA 1399 (2629)
Q Consensus 1346 ---L---~-~~~~~~~--------R~~Aa~~L~~l~~~lg~~~l~---~--------~~i~~~L~~~l~~~~~~~~R~~A 1399 (2629)
+ . ...+... -..-..+++.+...+|..... . ...+..+..+.... +...=...
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 1 1101100 012334444444433322111 0 01223334444443 44433334
Q ss_pred HHHHHHHHHHhc-------------------------cCchhHHHHHHHHHHHHcCCCCH--------------------
Q 000049 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2629)
Q Consensus 1400 l~al~~La~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2629)
+.....+.+.+- ..+.|++.++...++..+.-|+.
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 333333443221 12566777777777776543211
Q ss_pred --HHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhcc--CChhhhHHHHHHHHHHHhhCch-hhhhhccchHHHHhhhh
Q 000049 1435 --AVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2629)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L 1508 (2629)
.+++..-+++..+. .+. .+....+++.+-+.+.. .+|+...+.|.++|+++.+... .-...++.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 12333334443332 333 33445566666555543 4699999999999999866543 44578999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHH
Q 000049 1509 TDT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
..+ .+.|+...+..+|+..+.+.+ + .++.++..+
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L--------------------------------------- 571 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL--------------------------------------- 571 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH---------------------------------------
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH---------------------------------------
Confidence 654 456777777889888776542 2 224444444
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000049 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2629)
Q Consensus 1582 ~~~L~d~~~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~- 1654 (2629)
.+.+.+.+..++.+|+.++..+|..+.. +.+..||++.++..+.....+=.++-...-..++|.++...+.+.
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 4444555557777788888777765432 123468999999888888877778888889999999999888642
Q ss_pred chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh--ChhHHHhHhHHHHHhhcCCChhhHH--HHHHHHHHhhhhhccc
Q 000049 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~--g~~~l~~llp~l~~~l~~~~~~vR~--~a~~~l~~L~~~~g~~ 1730 (2629)
.+.++..|+.... +.+..+.... +.+.+ .+++ .++. ..+.+...++..+|..
T Consensus 652 ~~~~i~~Lm~~~~------------~~w~~l~~~~~~~~~~~-----------~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPN------------QVWDSIIQQATKNVDIL-----------KDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHH------------HHHHHHHHHHHHCGGGG-----------GCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHhhcCchhc-----------cChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 2333333332211 0111121110 11100 0110 0111 2344666788899999
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCC
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~ 1810 (2629)
|.|++..+.+-+++.-+ ..-..+...+..-|....+. ...+++ -.+|.+.+.++...+.+
T Consensus 708 f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~----- 767 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR----- 767 (1073)
T ss_dssp GHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc-----
Confidence 99999998887664321 11111111111111110000 000000 01455666666655422
Q ss_pred ccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc-cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHH
Q 000049 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889 (2629)
Q Consensus 1811 ~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~-~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~ 1889 (2629)
.++ .+. +.+.+-..-.+.++...-... .-.+++|-.....++..+....+..+..++..+...
T Consensus 768 --------~~~----~~~----v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~ 831 (1073)
T 3gjx_A 768 --------SND----PQM----VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 831 (1073)
T ss_dssp --------CSC----HHH----HHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHH
T ss_pred --------CCC----HHH----HHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 010 111 111111111111111111100 012234444444444444443444444444444444
Q ss_pred HHHHhc---CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000049 1890 LISSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2629)
Q Consensus 1890 L~~~L~---~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2629)
-+..++ +..++.|..-.+.+..+...+.... ...++..+.-+++.+.+++-..+...+.+++.+
T Consensus 832 Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 832 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 455565 5689999999999999988865432 233555555566777766666555555555544
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.58 E-value=1.4e-12 Score=183.57 Aligned_cols=506 Identities=11% Similarity=0.063 Sum_probs=322.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchh-hhhhccc
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ 1499 (2629)
-+|.++..+.+++..+|.++...++..-.. ......+|.++..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 366778888888889998887776644211 112567888999888889999999999999998643222 1112356
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000049 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
+++.|+..|.+ .++.+|..|+.+|..++..-.+ +. .+. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~---------------------~~---~i~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG---------------------LL---AIF------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH---------------------HH---HHH------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh---------------------HH---HHH------------HcCCH
Confidence 88999988875 4899999999999998753110 00 000 01346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~---- 1653 (2629)
|.|.+.+.+.+..+|..|+.++.+++..... ....+ -...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777778777889999999999999875211 11112 1468899999999999999999999999887521110
Q ss_pred CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccc
Q 000049 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~-~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~ 1730 (2629)
.-...++.|+..+++......+..++..+..++..-.. ..+ ...+|.++..+.+.+..++..++.++..++......
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11356778888887665443344455556655532111 111 346788888888889999999999999998765431
Q ss_pred hHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc--h-h-hhHHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000049 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S-L-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~--~-i-~~llp~l~~~l~d-~~~-~vR~sa~~ll~~ll~ 1804 (2629)
.....++|.+.+.+.+++..+|..|..++..+....... . + ...+|.+.+.+.+ .++ .+|..++.+++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568999999999999999999999988775421110 0 0 1145555555543 233 788999888888731
Q ss_pred hhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCcc-HHHHHHHHHHHHHHHhcChhhHhhhH
Q 000049 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2629)
Q Consensus 1805 ~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2629)
. ..+ .+.....+... ..++.+...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 ~--------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp S--------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred c--------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 1 001 00011112111 12344444444443 58999999999999864322 12111
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCCh
Q 000049 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2629)
Q Consensus 1884 -~~Ll~~L~~~L~~~~----------------------~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2629)
..+++.++..+.+.+ .+++..++.+|+.++...... .....+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 123444444443322 456667777887765311100 124567888888999999
Q ss_pred hHHHHHHHHHHHHHHhhchhhHHHhHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1938 SRRQGVCIGLSEVMASAGKSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~--~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+++..++.+|+.+... ......+. ..++.+...+.+++++||..|..++..+....+
T Consensus 608 ~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999887532 22222332 367888899999999999999999999876544
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.55 E-value=7e-13 Score=180.06 Aligned_cols=383 Identities=13% Similarity=0.091 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH--HhhHHHHHhhhccC-ChhhhHHHHHHHHHHHhhCch
Q 000049 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
....++.++..+.++++.+|..|..+++.++...... .+ ..++|.+++.|.++ ++.++..++.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3345778888888889999999999998886542111 11 46899999999987 899999999999999986654
Q ss_pred hhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-h-h-H-HhHHHHHHhccCCCChhHH-HHHHHHHhcc-
Q 000049 1492 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT- 1564 (2629)
Q Consensus 1492 ~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~- 1564 (2629)
..... -.+++|.++.++.++++.||..|+++|+.++..-.. . . + ...+|.|+..+.+++..++ .++.++....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43222 257899999999999999999999999999864211 1 1 1 4688999999988777766 5666554321
Q ss_pred cc-ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000049 1565 FV-NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2629)
Q Consensus 1565 ~~-~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2629)
.. ..........++|.|.+.+.+.++.++..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 11 2223344567899999999999999999999999999863 211122222 2688999999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh---HH-HhHhHHHHHhhcCCChhhHH
Q 000049 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2629)
Q Consensus 1643 L~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2629)
|+.++...+.. .-..++|.|+..+.+. ...+|..++.+++.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998643221 1136788888888766 4668889999999987632211 11 45788999988889999999
Q ss_pred HHHHHHHHhhhhhcc--chHhhHH--hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc----------hhh-----h
Q 000049 1715 GYLTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1775 (2629)
Q Consensus 1715 ~a~~~l~~L~~~~g~--~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~----------~i~-----~ 1775 (2629)
.++.+++.++...+. ....++- .++|.+...+.+.++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999886544 4444443 38999999999999999999999999887654321 111 1
Q ss_pred HHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1776 llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
.++.+.....+.+..++..+..++..++
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3666777778888889888888887764
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.55 E-value=1.5e-12 Score=176.84 Aligned_cols=387 Identities=14% Similarity=0.107 Sum_probs=278.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
-++.+++.|. ++++..|..|+..|..++.+.. ...+...++++.|.+.+.+..++..|..|+.+++.++.+.+...
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3566666664 4467899999999999887543 12223347889999999877459999999999999987433211
Q ss_pred hhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhh-ccCChhhhHHHHHHHHHHHhh
Q 000049 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2629)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~la~~ 1488 (2629)
...+. ..+|.++..+.++++.||+.|..++..+...-+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 12222 58999999999999999999999999997643321 11 24789999999 667899999999999999987
Q ss_pred CchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000049 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2629)
.|.........++|.|..++.+.++.|+..|+++|..++.... ...+. +.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~----------------------~~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQA----------------------VI------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHH----------------------HH-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHH----------------------HH-------
Confidence 5554444568899999999999999999999999999985321 11110 00
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l 1646 (2629)
-..++|.|...+.+.++.++..++.++++++.. .+...... -..++|.+..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 013566777777778889999999999999863 21111111 135788899999988 999999999999999
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHHH
Q 000049 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2629)
Q Consensus 1647 ~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a~ 1717 (2629)
+....+. .-..++|.|+..+.+. +...|..++.+++.++.....+.. ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632211 1136788888888776 456888899999999876444422 35788999999999999999999
Q ss_pred HHHHHhhhhhcc-------c---hHhhHHh--HHHHHHhhcCCCChhHHHHHHHHHHH
Q 000049 1718 TLFKYLPRSLGV-------Q---FQNYLQQ--VLPAILDGLADENESVRDAALGAGHV 1763 (2629)
Q Consensus 1718 ~~l~~L~~~~g~-------~---f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2629)
.++..+...... . +...+.. .++.+.....+++++++..|...+..
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 493 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999865433 1 2222221 35556666667777777766555444
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.54 E-value=3.5e-12 Score=179.47 Aligned_cols=492 Identities=12% Similarity=0.071 Sum_probs=325.5
Q ss_pred HHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcch-hh-hhcH
Q 000049 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-LK-KYGI 1379 (2629)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~-l~-~~~i 1379 (2629)
++.+++.|.++++++|..++..+...-.. .-....++.+...|. +++..+|..|+.+|..+........ +. ...+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56778888889999998888776543111 112456777777665 4567899999999999987432211 11 1256
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2629)
++.|.+.+.+..++..|..|+.+|..++..... ...+ ...+|.++..+.++++.||..|..++..++...... .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 777777776544788999999999887753211 1111 158999999999999999999999999997753322 1
Q ss_pred H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh-hccchHHHHhhhhcCCCHH-HHHHHHHHHHHHhhhcC
Q 000049 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~-~L~~ivp~L~~~L~D~~~~-VR~aA~~aL~~l~~~~~ 1531 (2629)
+ ...+|.+++.+.+.+++++..++.+|..++...++.... .-...++.|+.++.+.+++ ++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 468999999999999999999999999888654432111 1135678888888876554 56688889998885322
Q ss_pred ch-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000049 1532 NP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2629)
Q Consensus 1532 ~~-~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~ 1607 (2629)
+. .+ ...+|.|+..+.+++..++ .++..+....... ........++|.|.+.+.+.++++|..++.++++++..
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~- 429 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 429 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC-TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc-hhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-
Confidence 21 22 3568999999988776654 5555544311000 01112356889999999999999999999999999763
Q ss_pred CCCCccc-chHhhhHHHHHHHhcC-CC-HHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCChHHHHH
Q 000049 1608 TEPKDMI-PYIGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2629)
Q Consensus 1608 ~~~~~l~-~~l~~ll~~L~~~L~d-~~-~~VR~~A~~aL~~l~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~R~~ 1677 (2629)
.++... -.-...++.+..++.+ .+ ..+|..|+.+|+.++...++. .-...+|.|.+.+.+.....+|..
T Consensus 430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508 (780)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHH
Confidence 111100 0112466777777765 23 489999999999987533321 013457888888887765568888
Q ss_pred HHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCCC----------------------hhhHHHHHHHHHHhhhhhccchH
Q 000049 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQR----------------------ASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~----------------------~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++.+|+.++..-... .+ ..++|.+++.+.+.+ ..+++.++.++..++..- ...
T Consensus 509 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~ 586 (780)
T 2z6g_A 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNR 586 (780)
T ss_dssp HHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhH
Confidence 999999887522111 11 245666666554322 456777788888776421 111
Q ss_pred hhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhhh--HHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLPL--LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~~--llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
..+ ...+|.+...+.+.++.++..+..++..+...-. ...+.. .++.+.+.+.+.+..+|..+..++..+.
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 112 3478999999999999999999988887753210 111111 4667778888999999999999998875
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.53 E-value=2.2e-12 Score=175.18 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=282.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-H--HhH--HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-A--QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~--~~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
.-+|.++..+.++++.+|..|..+++.++..-. + ..+ ..++|.+++.|.+++ +.++..++.+|+.++...+...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 457888888888899999999999988876443 1 111 468999999998876 9999999999999998766543
Q ss_pred hhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc--hhH--HhHHHHHHhcc-CCCChhHH-HHHHHHHhcccc
Q 000049 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2629)
Q Consensus 1494 ~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l-~d~~~~~r-~al~~L~~~~~~ 1566 (2629)
.... .+.+|.|+.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++.++......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3222 36899999999999999999999999999864221 112 35788999999 56666665 555555432111
Q ss_pred -ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1567 -~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..........++|.|.+.+.+.++.++..++.++++++.. ....... .-..+++.+..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222344567899999999999999999999999999853 2111111 12357899999999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHH
Q 000049 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1645 ~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
.++...... .-..++|.|...+.+.....+|..++.+++.++...... . + ..++|.+++.+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998733211 114578888888876635668889999999998642221 1 1 3678999999988899999999
Q ss_pred HHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc----------hhh-----hHHHH
Q 000049 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----LLLPA 1779 (2629)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~----------~i~-----~llp~ 1779 (2629)
+.+++.++.........++ ..+++.+...+.+.++.++..++.++..++...... ... ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987555555665 358999999999999999999999999887644220 111 13455
Q ss_pred HhhccCCCchHHHHHHHHHHHHHH
Q 000049 1780 VEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1780 l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
+.....+.+..++..+..++..+.
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666667778888888888777653
No 37
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-13 Score=163.84 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.0
Q ss_pred cCCCHHHHHHHHHHHHH-HHhhhCcc---hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCch-hHHHHH
Q 000049 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2629)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~-~~~~-~~v~~i 1421 (2629)
.+.+|..|+.|...|.. ++.+.+.- ......+++.|.+.+.++.|..+|.+|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653221 111236788899999433489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---h-HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc---hhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2629)
+|.++..++|..+.||+++..++..++..+++. . ...+++.++..|++++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999987543 2 56899999999999999999999999999998766 6688
Q ss_pred hhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHH
Q 000049 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2629)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2629)
.++ +.++|.+.+++.|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777666665
No 38
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.52 E-value=3.2e-12 Score=173.53 Aligned_cols=391 Identities=14% Similarity=0.106 Sum_probs=283.5
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccc-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCC
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
...+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.+...+.++ ++.+|..|+.+|+.++....+
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 345778888888888999999999999987642121 1111 1246889999999987 899999999999999873221
Q ss_pred C--C--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--hH-H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhh
Q 000049 1653 E--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2629)
Q Consensus 1653 ~--~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~--~~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~ 1724 (2629)
. . -...+|.|+..+.+. +..+|..++.+|+.++..... +. . ...+|.+++.+.+.++.+|..++.++..++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1 1 146788888888765 456888899999998754211 11 1 467899999999999999999999999999
Q ss_pred hhh-ccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh---chhh-hHHHHHhhccCCCchHHHHHHHHHH
Q 000049 1725 RSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP-LLLPAVEDGIFNDNWRIRQSSVELL 1799 (2629)
Q Consensus 1725 ~~~-g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~---~~i~-~llp~l~~~l~d~~~~vR~sa~~ll 1799 (2629)
... +..-......++|.+...+.++++.+|..+..++..+...... ..++ .++|.+...+.+.+|.+|..++.++
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 754 2222345577999999999999999999999999887743221 1111 3678888888899999999999999
Q ss_pred HHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhH
Q 000049 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2629)
Q Consensus 1800 ~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l 1879 (2629)
+.+... . + .....+.+ ..+++.+...+.+.+..+|..|+.+++.++...+...
T Consensus 324 ~~l~~~-------------~---~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 376 (530)
T 1wa5_B 324 GNIVTG-------------N---D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376 (530)
T ss_dssp HHHTTS-------------C---H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHcC-------------C---H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 987421 0 0 01111111 1245556666777889999999999999998766555
Q ss_pred hhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 000049 1880 KEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2629)
Q Consensus 1880 ~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li 1951 (2629)
..++ ..+++.++..+.++++.+|..|+.+|+.++...+. . ....++|.|...+.++++.++..++.+|..++
T Consensus 377 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4444 24677788888888999999999999999876443 2 12347788888899999999999999999887
Q ss_pred Hhhchhh------HHHhHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1952 ASAGKSQ------LLSFMD-----ELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1952 ~~~~~~~------l~~~l~-----~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
....... ..++.. ..++.+...+.++++++++.|..++..++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 6543210 112222 246777778889999999998888776653
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=1.2e-11 Score=171.84 Aligned_cols=461 Identities=11% Similarity=0.075 Sum_probs=316.8
Q ss_pred hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC-cch
Q 000049 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 1373 (2629)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~ 1373 (2629)
..++.++..|+++++.+|..++.+|..+....... ....++.++..|..+++...|..|+.+|..+..... ...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 45788888899999999999999998887543211 236788888888776678899999999998775422 122
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
+.....++.|.+.+++. ++..|..|+.++..++.........+. ...+|.++..+.++++.++..+..++..+.....
T Consensus 94 i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 22336788898999876 789999999999999976543222332 3689999999999999999988888888764222
Q ss_pred HH--hH--HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1453 AQ--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1453 ~~--~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.. .+ ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11 11 345778888877654 45566788888888764322111111357899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000049 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2629)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~ 1607 (2629)
....+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 253 ~~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~- 293 (644)
T 2z6h_A 253 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 293 (644)
T ss_dssp GGCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-
T ss_pred hcchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 6432100 0123566666677777788888899999888763
Q ss_pred CCCCccc-chHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCChHHHHH
Q 000049 1608 TEPKDMI-PYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2629)
Q Consensus 1608 ~~~~~l~-~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~R~~ 1677 (2629)
.+.... -.-...++.|..++.+. .+.+|..|+.+|+.++...++. .....+|.|.+.+.++....+|..
T Consensus 294 -~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 294 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 111000 01123677777777653 3799999999999997643321 013568888888887655567888
Q ss_pred HHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCC----------------------ChhhHHHHHHHHHHhhhhhccchH
Q 000049 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2629)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~----------------------~~~vR~~a~~~l~~L~~~~g~~f~ 1732 (2629)
++..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..-.. .
T Consensus 373 a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~ 450 (644)
T 2z6h_A 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--R 450 (644)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--H
T ss_pred HHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--H
Confidence 888888876532111 11 34566666655442 345666777777777653321 2
Q ss_pred hhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhh--hHHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000049 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~--~llp~l~~~l~d~~~~vR~sa~~ll~~ll 1803 (2629)
..+ ...+|++...+.+.+++++..+..++..+...-. ...+. ..++.+.+.+.+++..+|..+..+++.+.
T Consensus 451 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 223 2478999999999999999999888877653200 01111 14567777888999999999999988874
No 40
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.51 E-value=1.1e-08 Score=145.71 Aligned_cols=755 Identities=12% Similarity=0.093 Sum_probs=399.5
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhc--cccccCChhhhh----hH
Q 000049 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQT--TFVNTVDAPSLA----LL 1577 (2629)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~--~~~~~~~~~~l~----~i 1577 (2629)
+..+.++++..|..|.+-|.++-+. |+.-.++..++.. +.+..+| .|+..+-.. ...+.+...... .+
T Consensus 22 v~~ly~p~~~~r~~A~~~L~~~q~s---p~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~L 96 (1023)
T 4hat_C 22 VSTFYQGSGVQQKQAQEILTKFQDN---PDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1023)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHC---TTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHcC---ccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3334445555777777777777543 3222222223222 2234566 343333220 111223332222 23
Q ss_pred HHHHHHhhcCC-----CHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000049 1578 VPIVHRGLRER-----SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2629)
Q Consensus 1578 ~p~L~~~L~d~-----~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~ 1652 (2629)
+..+.+...+. ..-++.+.+.++..++... .|. ..+.+++-+...+.. .+.........+..+.+.+.+
T Consensus 97 l~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~-~p~----~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~ 170 (1023)
T 4hat_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQE-WPQ----NWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFD 170 (1023)
T ss_dssp HHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHH-TTT----TCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh-Chh----hchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHH
Confidence 33333322221 3567888999999988763 332 356677777777754 345566667777777665432
Q ss_pred ---C----------------CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH--HhHhHHHH-HhhcCCCh
Q 000049 1653 ---E----------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDII-RNCSHQRA 1710 (2629)
Q Consensus 1653 ---~----------------~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l--~~llp~l~-~~l~~~~~ 1710 (2629)
+ .++.+++.+...+.+.........+..++...+.-.....+ .++++.+. ..+. ++
T Consensus 171 ~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~ 248 (1023)
T 4hat_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SP 248 (1023)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SH
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CH
Confidence 1 12334444445554443343445566667766665555433 46777777 5553 57
Q ss_pred hhHHHHHHHHHHhhh-hh-cc--chHhhHHhHHHHHHhhc----CCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh
Q 000049 1711 SVRDGYLTLFKYLPR-SL-GV--QFQNYLQQVLPAILDGL----ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782 (2629)
Q Consensus 1711 ~vR~~a~~~l~~L~~-~~-g~--~f~p~l~~ii~~ll~~L----~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~ 1782 (2629)
.+|..++.++..+.. .. ++ .+...+..+++.++..+ -.....++ +.+..
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~-----------------------~~~~~ 305 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLK-----------------------ATYAN 305 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHH-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHH-----------------------HHHhc
Confidence 799999999998875 22 23 23333333333332211 11111111 11111
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHH
Q 000049 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862 (2629)
Q Consensus 1783 ~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~ 1862 (2629)
+. +++......-..++..+....... .+ .. ++ ... +. ...+..+..+-...+.++-.
T Consensus 306 ~~-~~D~e~~~~l~~l~~~~~e~~~~l-----i~--~~-~~-----~~~-~l--------~~~l~~Ll~~~~~~d~ei~~ 362 (1023)
T 4hat_C 306 AN-GNDQSFLQDLAMFLTTYLARNRAL-----LE--SD-ES-----LRE-LL--------LNAHQYLIQLSKIEERELFK 362 (1023)
T ss_dssp TC-TTHHHHHHHHHHHHHHHHHHHGGG-----GT--SC-GG-----GHH-HH--------HHHHHHHHHHTTSSCHHHHH
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHHHH-----Hh--CC-cc-----hhH-HH--------HHHHHHHHHhhCCCcHHHHH
Confidence 10 111111111112222222111100 00 00 00 000 00 01111222222233556667
Q ss_pred HHHHHHHHHHhc------ChhhHhhhHHHHHHHHHHHhcCCC-------H------------H--HHH-HHHHHHHHHHH
Q 000049 1863 AALHVWKTIVAN------TPKTLKEIMPVLMNTLISSLASSS-------S------------E--RRQ-VAGRALGELVR 1914 (2629)
Q Consensus 1863 aA~~~l~~l~~~------~~~~l~~~l~~Ll~~L~~~L~~~~-------~------------~--~R~-~A~~~L~~lv~ 1914 (2629)
.+++.|..+... ....+++++..+++.++..+.-|. . + ... ....+|..+..
T Consensus 363 ~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~ 442 (1023)
T 4hat_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1023)
T ss_dssp HHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc
Confidence 777888777652 234577888899999998877543 0 1 111 11256666655
Q ss_pred HhccchhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhc-----CCcHHHHHHHHH
Q 000049 1915 KLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC-----DSILEVRESAGL 1987 (2629)
Q Consensus 1915 ~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~-----d~d~~VR~~A~~ 1987 (2629)
-.+....+.+++.+.+.+.+ .+|..|.++|.++|.+.....++...++++++++.+...+. |+...||..++.
T Consensus 443 l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 55666777788888776654 68999999999999998877766677899999999888775 356678888889
Q ss_pred HHHHHHHHhC--hhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhC
Q 000049 1988 AFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2629)
Q Consensus 1988 al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g 2065 (2629)
++|.+.+.+. +..+..++..+++.+.++..+ +...++.|+..|++.++
T Consensus 523 ~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~------------------------------v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 523 VVGQYPRFLKAHWNFLRTVILKLFEFMHETHEG------------------------------VQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHH------------------------------HHHHHHHHHHHHHHHHH
Confidence 9998877654 344556666666666433210 11123455555555444
Q ss_pred CCh--------hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccc-HHHHHHHHHhhcCCC------------
Q 000049 2066 PGL--------NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDN------------ 2124 (2629)
Q Consensus 2066 ~~l--------~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~-~~~ll~~Ll~~l~d~------------ 2124 (2629)
..+ .||++.++..+......-++.-+..+.++++.++...+... ...++..|+..+...
T Consensus 573 ~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~ 652 (1023)
T 4hat_C 573 YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANP 652 (1023)
T ss_dssp HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCT
T ss_pred HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 333 57888888888887776667777889999999998775422 333443333222110
Q ss_pred ----Ch--hHH-HHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 000049 2125 ----QA--SIR-RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2629)
Q Consensus 2125 ----~~--~vR-~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~ 2197 (2629)
++ ..+ ...+.++..++...+..+.+++..+++.++...+- ..+.+.
T Consensus 653 ~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~--------~s~~i~------------------- 705 (1023)
T 4hat_C 653 TLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA--------VSSMIS------------------- 705 (1023)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--------HHHHHH-------------------
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH--------HHHHHH-------------------
Confidence 00 001 11223333333333344444444444333332210 000000
Q ss_pred HHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHH
Q 000049 2198 DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2629)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li 2277 (2629)
+.+.. +|. ...+ . | ...++ ..+|....+.+...+..... .......+++||+
T Consensus 706 ~~~~~----------~g~------~~~~--~---~-~~r~~----r~ik~~il~l~~~~i~~~~~--~~~~~~~~~~~l~ 757 (1023)
T 4hat_C 706 AQVAA----------EGL------IATK--T---P-KVRGL----RTIKKEILKLVETYISKARN--LDDVVKVLVEPLL 757 (1023)
T ss_dssp HHHHH----------HCG------GGGG--S---H-HHHHH----HHHHHHHHHHHHHHHHHCSC--HHHHHHHTHHHHH
T ss_pred HHHHh----------CCc------hhhc--c---H-HHHHH----HHHHHHHHHHHHHHHhcCCC--HHHHHHHhHHHHH
Confidence 00000 000 0000 0 0 00011 13455556666666655531 1222233444444
Q ss_pred HHh-cCC--CCHhHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHHH----HcCC---CCHHHHHHHHHHHHHHHhcc--
Q 000049 2278 RII-GDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFIK----CLQD---STRTVRSSAALALGKLSALS-- 2344 (2629)
Q Consensus 2278 ~~l-~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k----~L~d---~~~~vR~~Aa~aLg~l~~~~-- 2344 (2629)
..+ .|. ..+..| ...|.+.+.++.++|..+.+.+|.+...+.. .+++ ..++.|..-.+-+..+....
T Consensus 758 ~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~ 837 (1023)
T 4hat_C 758 NAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFA 837 (1023)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChH
Confidence 332 210 122222 5678888899999998888888887776543 3444 27999999888888874322
Q ss_pred -----C--ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCC----cC----hHHHHHHHHHHHHhhcCC
Q 000049 2345 -----T--RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS----VS----SAVKIRVYSVLKDLVYHD 2403 (2629)
Q Consensus 2345 -----~--~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~----~~----~~~~~~i~~~L~~~l~~~ 2403 (2629)
| .+..++.-++.+++.+..++-.+.++.+.+++.+.... .. ..|...++.-++..+.|.
T Consensus 838 ~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 838 AFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2 34556777778888888999999999999998765431 11 244455555555556665
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.50 E-value=2.8e-11 Score=168.05 Aligned_cols=471 Identities=12% Similarity=0.062 Sum_probs=302.9
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCchhHH
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIA 1536 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2629)
.+|.++..|.++++.+|..++.+|+.++...+... ....+.+++.++..|.+. ++.+|..|+.+|..++..- +.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~---~~- 90 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---EG- 90 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH---HH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---hh-
Confidence 45666666666666666677777777766443221 111246788888888764 8999999999999887531 10
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
+ ..+. -...+|.|.+.+.+.+..++..++.++.+++... + .....+
T Consensus 91 -----------------~---~~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~-~~~~~v 136 (644)
T 2z6h_A 91 -----------------L---LAIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-E-GAKMAV 136 (644)
T ss_dssp -----------------H---HHHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-T-THHHHH
T ss_pred -----------------H---HHHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-c-hhHHHH
Confidence 0 0000 0135677777787788899999999999998752 1 111122
Q ss_pred -HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1617 -l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
-...+|.+..++.++++.++..++.+|..++...++. .-...++.|+..+.+......+..++..+..++..-..
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 2568999999999999999999999999988632211 11356788888887765544555566666655432111
Q ss_pred -hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000049 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2629)
Q Consensus 1692 -~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~ 1768 (2629)
..+ ...+|.+++.+.+.+..+++.++.++..++..... + .....++|.+++.+.++++.+|..+..++..+...-
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-C-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-h-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 111 35688899989888999999999999999876433 1 234578999999999999999999999988776431
Q ss_pred hh--ch-h-hhHHHHHhhccCC--CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhH
Q 000049 1769 AT--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2629)
Q Consensus 1769 ~~--~~-i-~~llp~l~~~l~d--~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~ 1842 (2629)
.. .. . ...+|.+.+.+.+ +.+.++..++.+++.+... ..++ +.....+.+ .
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~--------------~~~~---~~~q~~v~~-~----- 351 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQEA---EMAQNAVRL-H----- 351 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STTH---HHHHHHHHH-T-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC--------------CchH---HHHHHHHHH-c-----
Confidence 11 10 1 1145555555543 2378999999998887411 0010 001011111 1
Q ss_pred HHHHHHHHhhccCc-cHHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCC----------------------C
Q 000049 1843 NEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS----------------------S 1898 (2629)
Q Consensus 1843 ~~vl~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~----------------------~ 1898 (2629)
..++.+...+.+. +..+|..|+.+++.++.+.... ..+. ..+++.++..+.+. +
T Consensus 352 -~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 352 -YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp -THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred -cChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 1344454455544 4689999999999988653321 2211 12444455544432 2
Q ss_pred HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHH
Q 000049 1899 SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTA 1973 (2629)
Q Consensus 1899 ~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~ 1973 (2629)
.+++..+..+|..++...... .....+|.+...+.+.+++++..++.+|+.+... ......+ ...++.+...
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHH
Confidence 455666777777665322111 1235678888888999999999999999887532 1122222 2457788889
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1974 LCDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
+.++++++|..|+.+++.+....+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999998876543
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=3.5e-13 Score=162.33 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=164.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCchhHHH
Q 000049 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2629)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~-~~~~~~~R~~Al~al~~La~~~~~~~~~~v~ 1419 (2629)
+++.+ ++.+|..|++|+.+|..++.+.+. ..-....+++.+.+.+. +. +..+|.+|+.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 466899999999999999987432 11112368888888885 65 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhC-ch-hhhhhc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~-~l~~~L 1497 (2629)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+.+++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5789999999999999999999999999977654 55 357789
Q ss_pred cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHH
Q 000049 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2629)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2629)
+.++|.+..+++|++++||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998864454433
No 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=1.6e-11 Score=167.23 Aligned_cols=460 Identities=11% Similarity=0.074 Sum_probs=304.9
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc-----hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC-cc
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-IS 1372 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~-----~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~ 1372 (2629)
...++.+++.++++++.+|..++.++..+....... ....++.++..|..++++..|..|+.+|..+..... ..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 346788888899999999999999998876432211 235788888888777678999999999999875422 12
Q ss_pred hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
.+...+.++.|.+.+.+. ++..|..|+.++..++...+.. ...+ ...+|.++..+.++++.+|..+..++..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 222346788888999876 7899999999999998764432 2222 36899999999999999999998888877542
Q ss_pred hcHH--h-H-HhhHHHHHhhhccCC-hhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1451 LSAQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1451 l~~~--~-v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
-... . . ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-.+.+|.+..++.+.++.++..++++|..
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 1111 1 1 245777777777654 344556777888887532211111114688999999999999999999999999
Q ss_pred HhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1526 l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
++....... ....++|.+.+.+.+.++++|..++.++++++.
T Consensus 254 l~~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 254 LSDAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHTTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 986432110 012356666677777778888889888888865
Q ss_pred hcCCCCcccch-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-----C--chhhHHHHHHHhccCCChHHH
Q 000049 1606 LVTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVER 1675 (2629)
Q Consensus 1606 ~~~~~~~l~~~-l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~~g~~-----~--~~~ll~~Ll~~L~~~~~~~~R 1675 (2629)
. .++..... -...++.+...+.+ .++.+|..|..+|+.++...++. . -...+|.|.+.+.++.....|
T Consensus 296 ~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~ 373 (529)
T 1jdh_A 296 N--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373 (529)
T ss_dssp T--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred C--CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHH
Confidence 2 11010001 12356777777764 34899999999999997643321 0 124578888888876655678
Q ss_pred HHHHHHHHHHHHhhChh-HH--HhHhHHHHHhhcCCChhhHHHHH----------------------HHHHHhhhhhccc
Q 000049 1676 SGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYL----------------------TLFKYLPRSLGVQ 1730 (2629)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~~~vR~~a~----------------------~~l~~L~~~~g~~ 1730 (2629)
..++..++.++..-... .+ ..++|.+++.+.+.++.+|..+. .++..++... .
T Consensus 374 ~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~ 451 (529)
T 1jdh_A 374 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--H 451 (529)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--H
T ss_pred HHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--h
Confidence 88888888887532211 11 35678888777766666665444 3444443321 1
Q ss_pred hHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhHHHHHhhccCCCchHHHHHHHHHHHHH
Q 000049 1731 FQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1731 f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i--~~llp~l~~~l~d~~~~vR~sa~~ll~~l 1802 (2629)
....+ ...++.+...+.+.+++++..+..++..+...-. ...+ ...++.+.+.+.+.+..+|..+...+..+
T Consensus 452 ~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 11111 2367899999999999999999888877652100 0011 12456777777888888888877766543
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=1.4e-11 Score=168.97 Aligned_cols=480 Identities=14% Similarity=0.083 Sum_probs=301.9
Q ss_pred cHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2629)
Q Consensus 1452 ~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2629)
.++.+....+.+++.+.+++...|+-+-..+..++...|+.. .-++..+.+-++|+++.||..|.++|+.++
T Consensus 64 ~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---- 135 (618)
T 1w63_A 64 LGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG---- 135 (618)
T ss_dssp TTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----
T ss_pred cCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----
Confidence 344455667777788888888888877777777665544422 235667777889999999999999999887
Q ss_pred chh-HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000049 1532 NPE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2629)
Q Consensus 1532 ~~~-i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2629)
.++ .+.++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...+.|+++.++..|..++..++.. +
T Consensus 136 ~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~ 210 (618)
T 1w63_A 136 SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--S 210 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--H
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--C
Confidence 344 37788889999999999988 455555431 00 12233446677788888999999999999999988753 2
Q ss_pred CCcccchHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhhhCC--CCchhhHHHHHHHhccCC--
Q 000049 1610 PKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDN-- 1670 (2629)
Q Consensus 1610 ~~~l~~~l~~ll~~L~~~L~---------------d~~~~VR~~A~~aL~~l~~~~g~--~~~~~ll~~Ll~~L~~~~-- 1670 (2629)
++ ...++..++|.+...|. .+++-.+....++++.+...-.+ +.+.++++.+........
T Consensus 211 ~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 211 PD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccch
Confidence 11 12233445555554443 24788888899999888753211 122333433332211111
Q ss_pred ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCC
Q 000049 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2629)
Q Consensus 1671 ~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2629)
+..+...++.++..+.. ........++.+...+.+.++.+|..++..++.++...+..|.+|. +.++.++.|++
T Consensus 290 ~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d 363 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLD 363 (618)
T ss_dssp HHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSC
T ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCC
Confidence 12344445554443211 1112234556667778888999999999999999987766555554 55667788999
Q ss_pred hhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHH
Q 000049 1751 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2629)
Q Consensus 1751 ~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~ 1830 (2629)
.+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+....++ ....+.
T Consensus 364 ~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~----------------~~~~~v 424 (618)
T 1w63_A 364 VSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP----------------SKRWHI 424 (618)
T ss_dssp HHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC----------------CHHHHH
T ss_pred hhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc----------------cHHHHH
Confidence 9999999888776643 334566778888887778888999999999988643210 011111
Q ss_pred HHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2629)
Q Consensus 1831 ~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~~L~ 1910 (2629)
..+.+ .+.+....++..++..+..++...|......++.+...+.... ..... ...+++++|
T Consensus 425 ~~ll~----------------lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-~~~~~-~~~~~wilG 486 (618)
T 1w63_A 425 DTIMR----------------VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-SQQPL-VQVAAWCIG 486 (618)
T ss_dssp HHHHH----------------HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC-SCSHH-HHHHHHHHH
T ss_pred HHHHH----------------HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc-ccHHH-HHHHHHHHh
Confidence 12221 2222223455556666777777666543445555544443211 12333 446899999
Q ss_pred HHHHHhccc---------hh-hhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCc
Q 000049 1911 ELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2629)
Q Consensus 1911 ~lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2629)
+....+... +. ..+.+.+...+. ..++.+|..+..++..+....+. ..+.+...+.....|.|
T Consensus 487 Ey~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d 561 (618)
T 1w63_A 487 EYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSID 561 (618)
T ss_dssp HHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSC
T ss_pred hhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCC
Confidence 998765321 11 123444444443 56889999999999887654432 12334444555677889
Q ss_pred HHHHHHHHHHHHHHH
Q 000049 1979 LEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1979 ~~VR~~A~~al~~l~ 1993 (2629)
.+||+.|...+..+.
T Consensus 562 ~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 562 VELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999988666543
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.47 E-value=2.7e-11 Score=164.85 Aligned_cols=465 Identities=12% Similarity=0.069 Sum_probs=285.4
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+|.+++.|.++++.+|..++..|+.++...+... ....++.++.+...+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 3444444444444444444555555543222110 00123567888888864 4899999999999998653 111
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2629)
+.. +. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~~---i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LLA---IF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HHH---HH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HHH---HH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 000 00 013566777777777888999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh-
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~- 1691 (2629)
-...+|.+..++.++++.+|..+..++..++....+. .-.+.++.++..+.+......+..++..+..+...-..
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2468899999999999999999999999887521110 11245777888787765554444455555555432111
Q ss_pred hHH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000049 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2629)
Q Consensus 1692 ~~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~ 1769 (2629)
..+ ...+|.+++.+.+.++.++..++.++..++...+.. .....++|.+.+.+.++++++|..+..++..+...-.
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 357888999998889999999999999998764431 2345789999999999999999999999888754211
Q ss_pred h--ch-h-hhHHHHHhhccCC--CchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHH
Q 000049 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2629)
Q Consensus 1770 ~--~~-i-~~llp~l~~~l~d--~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~ 1843 (2629)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+. |
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~-~----- 355 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH-Y----- 355 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-T-----
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-C-----
Confidence 0 00 0 1144555555533 4578999999999887411 011 11111122211 1
Q ss_pred HHHHHHHhhccCcc-HHHHHHHHHHHHHHHhcChhhHhhhH-HHHHHHHHHHhcCCCHHHHHHHHHHHH-----------
Q 000049 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRALG----------- 1910 (2629)
Q Consensus 1844 ~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l-~~Ll~~L~~~L~~~~~~~R~~A~~~L~----------- 1910 (2629)
.++.+...+.+.. ..+|..++.+++.++.+... ...+. ..+++.++..+.+.++++|..|.++++
T Consensus 356 -~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 356 -GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp -CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred -ChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 2344444455544 68999999999999864332 22222 245667777777666666665554443
Q ss_pred -----------HHHHHhccc---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHh
Q 000049 1911 -----------ELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTAL 1974 (2629)
Q Consensus 1911 -----------~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L 1974 (2629)
.++...... .....+|.+...+.+++++++..++.+++.+... +. ....+ ...++.+...+
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHh
Confidence 332211000 1234567888888999999999999999886421 11 11112 35678888999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 000049 1975 CDSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l 1992 (2629)
.+++++|+..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999888764
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.44 E-value=1.6e-10 Score=158.29 Aligned_cols=476 Identities=14% Similarity=0.107 Sum_probs=310.1
Q ss_pred ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Q 000049 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2629)
Q Consensus 1332 ~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~ 1411 (2629)
+.+........++.+. ++++..|+.+...+..++..- ++... -+++.+.+-+++. |+..|..|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~-~e~~~--l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER-QDVHL--LMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC-HHHHH--HHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC-cHHHH--HHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 4444444445555554 567888888888777776532 22111 4667788888876 78899888888877752
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCch
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2629)
......++|.+..++.|+++.||++|..++..+.... ++.++.+++.+.+.+.+.+..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 2345678899999999999999999999999998743 455667888888888899999999999999999876554
Q ss_pred hhhhhccchHHHHhhhhcC---------------CCHHHHHHHHHHHHHHhhhcCchhH-HhHHHHHHhcc---C---CC
Q 000049 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGL---T---DP 1549 (2629)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l---~---d~ 1549 (2629)
. ...+..++|.++..|.+ +++..+....++|+.++.. +|.. +.+.+.|...+ . +.
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344566666665543 4789999999999988753 3432 33333333332 1 11
Q ss_pred ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHh
Q 000049 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2629)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2629)
+..+. +|+.++.... . ........++.+.+.+.+.++++|..+..+++.++.. .+..+.+ ..+.+..++
T Consensus 290 ~~aV~~ea~~~i~~l~--~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~----~~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIK--S--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQR----HRSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSC--C--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGG----GHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHH----HHHHHHHHc
Confidence 22233 5666655311 1 1222334677777888888889999999999999874 2223333 345667788
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCC
Q 000049 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2629)
Q Consensus 1629 ~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~ 1708 (2629)
.|++..+|..|+.++..++. +..+..+++.++..+.+.+ ...|..++.+++.++..+... ...+++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 89999999999999988865 3456788888888887654 557889999999998876543 455667777777666
Q ss_pred ChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC--CChhHHHHHHHHHHHHHHHhhhc----------hhhhH
Q 000049 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2629)
Q Consensus 1709 ~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d--~~~~VR~~al~al~~iv~~~~~~----------~i~~l 1776 (2629)
...++..+...+..+....++. .. .+++.+...+.+ ..+.+...++..++......... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 6667766677777776654432 22 234444444432 23344445666666665443210 01123
Q ss_pred HHHHhhccC--CCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhcc
Q 000049 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2629)
Q Consensus 1777 lp~l~~~l~--d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~ 1854 (2629)
.+.+...+. .++..+|..++.++..+....+ +. . ..+. .+ +-.+..
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------------~~--~----~~l~---------~~---L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------------CT--V----NRIK---------KV---VSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------------SC--H----HHHH---------HH---HHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------------ch--H----HHHH---------HH---HHHhcC
Confidence 333333221 4677789888888877753321 00 0 1111 11 222357
Q ss_pred CccHHHHHHHHHHHHHHHh
Q 000049 1855 DVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~ 1873 (2629)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8889999999999987654
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.39 E-value=8.5e-11 Score=157.79 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=269.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
++-++..+...++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56667788888899999999999888653221 122 3479999999975 45788999999999999877665433
Q ss_pred hc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000049 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2629)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2629)
-. .+.+|.|+.+|.++++.||+.|+++|++++..- ++. ...++.|+..+.+++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 22 367999999999999999999999999998532 221 22344455544433211
Q ss_pred CChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1569 ~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 012345667778888888642 2222223456789999999999999999999999999886
Q ss_pred hhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHHHH
Q 000049 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2629)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~~l 1720 (2629)
.-.+. .-..++|.|.+.+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|..++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457788888887654 557778888888876533221 1 1 34567777788889999999999999
Q ss_pred HHhhhhhccchHhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hHHHHHhhccCCCchHHHHH
Q 000049 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2629)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~-----~llp~l~~~l~d~~~~vR~s 1794 (2629)
..++........... ..++|.+...+.+.+..+|..|..++..+......+.+. -.+|.|.+.+...+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999864433222222 248899999999999999999999998877643333222 25778888888899999999
Q ss_pred HHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Q 000049 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2629)
Q Consensus 1795 a~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2629)
+++.+..++...... . ..+.. ..+.+..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999998887542110 0 01111 12222222 12233333466788899999999887764
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.35 E-value=2.6e-10 Score=154.14 Aligned_cols=395 Identities=15% Similarity=0.161 Sum_probs=271.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhhcc-CChhhhHHHHHHHHHHHhhCchhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
..++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|..++.+.+.+.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3466777788888889998888888877643221 112 4579999999965 557899999999999998776653
Q ss_pred hhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHHHhcccc
Q 000049 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1494 ~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2629)
... -.+.+|.|+.++.++++.||+.|+++|+.++.. +++. ...++.|+..+.+++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r~~i~~~g~i~~Ll~lL~~~~~~-------------- 219 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFRDLVIKHGAIDPLLALLAVPDLS-------------- 219 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHTTCSSCGG--------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHcCCcHHHHHHHhccchh--------------
Confidence 322 246899999999999999999999999999853 2222 23445555555433211
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l 1646 (2629)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.+
T Consensus 220 --------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 220 --------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp --------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred --------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 012345667778888887642 22222234567899999999999999999999999998
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh--H-H-HhHhHHHHHhhcCCChhhHHHHHH
Q 000049 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLT 1718 (2629)
Q Consensus 1647 ~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~a~~ 1718 (2629)
+....+. ....++|.|+..+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|..++.
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 8643221 12457888888887654 557778888888876432221 1 1 456788888999999999999999
Q ss_pred HHHHhhhhhccchHhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-----HHHHHhhccCCCchHHH
Q 000049 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIR 1792 (2629)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~-----llp~l~~~l~d~~~~vR 1792 (2629)
+++.++..-.......+. .++|.+...+.+.+..+|..|..++..+......+.+.. .+|.|.+.+...+.+++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 999998643332222222 488999999999999999999999988776443332221 57788888888999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHH
Q 000049 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2629)
Q Consensus 1793 ~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2629)
..+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++
T Consensus 438 ~~~L~aL~nil~~~~~~---------~-----~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKL---------G-----ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTT---------T-----CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhc---------c-----ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999998887532100 0 0111112 2222221 222333346678889999999988776
Q ss_pred h
Q 000049 1873 A 1873 (2629)
Q Consensus 1873 ~ 1873 (2629)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 4
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.35 E-value=3.7e-10 Score=153.93 Aligned_cols=479 Identities=13% Similarity=0.105 Sum_probs=300.2
Q ss_pred HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
++.+....+.+++.+.+++...|+.+-..+..++...|+.+ --++..+.+-++|+++.+|..|..+|+.+. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~ 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG----S 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----C
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----C
Confidence 34455677888888889999999988888888777666543 234566777889999999999999999985 3
Q ss_pred hhH-HhHHHHHHhcc--CCCChhHH-HHHHHHHhccccccCChhhhh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1533 PEI-ASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1533 ~~i-~~lvp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~~~~~~l~--~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
|++ +.++|.+.+.+ .|++.++| .|+-++... .. .++.... .+++.+.+.+.|+++.++..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 544 78889999999 89999998 444444321 11 1122222 6788899999999999999999999998874
Q ss_pred cCCCCcccchHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCC
Q 000049 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2629)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~VR~~A~~aL~~l~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2629)
+++.+.++.+.++..+.+++.++ +|-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 33445667777777777776432 4667777777776654321111 12234444443332111
Q ss_pred ---C-------hHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1671 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1671 ---~-------~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
. ..+...++.++-.+. -..+.....+..+...+.+.++.+|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 012222222222211 11233455666777777888999999999999999876542 134455566
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.++.++. |++..||..+++.+..++ ....++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 6777788 899999998888766654 34456778888888877777788888888888876443210
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCC-
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~- 1898 (2629)
.+.+...+.+.+. +....+...+...+..++.+.|.. +. ..+..+...+.++.
T Consensus 439 ------~~~~v~~Ll~ll~----------------~~~~~v~~ev~~~l~~ii~~~~~~-~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIR----------------IAGDYVSEEVWYRVIQIVINRDDV-QG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHH----------------HHGGGSCSHHHHHHHHHHGGGCSC-HH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHH----------------hhcccchHHHHHHHHHHHhCChhH-HH---HHHHHHHHHHcCccc
Confidence 0111122222111 111113333444445555444432 22 12334455566543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHh
Q 000049 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2629)
Q Consensus 1899 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2629)
...-..+++++|+........ ..| .++..+...+.+.++.+|..+..++..+....+ + . .+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 334456678999887665432 222 455666666677889999999988888755432 1 1 123333444455
Q ss_pred c--CCcHHHHHHHHHHHHHH
Q 000049 1975 C--DSILEVRESAGLAFSTL 1992 (2629)
Q Consensus 1975 ~--d~d~~VR~~A~~al~~l 1992 (2629)
. |.|++||+.|...+.-+
T Consensus 568 ~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 5 89999999997655443
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=5.9e-12 Score=151.63 Aligned_cols=199 Identities=19% Similarity=0.283 Sum_probs=162.5
Q ss_pred HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCc---
Q 000049 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2629)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2629)
..+-|.+.+.+.+++|+.|++++..|..++..+|......+.++++.+...+. |++..||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445678888999999999999999999988766555567889999999995 99999999999999999988775
Q ss_pred hhHHhHHHHHHhccCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCC
Q 000049 1533 PEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2629)
+++..++|.+++.+.|++..+|++ ..++.. +... ..+..++|.+...+.+++|.+|..+..+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~--~~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDA--IYAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHH--HHTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 677899999999999999988843 233221 1111 1356789999999999999999999999999776532212
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000049 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2629)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~ 1660 (2629)
.+.+|++.++|.+...+.|+.++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999764444443
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.32 E-value=1.6e-10 Score=155.09 Aligned_cols=347 Identities=14% Similarity=0.128 Sum_probs=238.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
.+++.+ ++++...+..|...+..+...- +.+.+...+++|.|.+++.+..++..+..|..+|..++.+-...-...
T Consensus 61 ~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 61 DIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 333443 3344566666666666655321 223333457889999999766578889899999999986543222222
Q ss_pred HH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCCh-----hhhHHHHHHHHHHHh
Q 000049 1418 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMAY 1487 (2629)
Q Consensus 1418 v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la~ 1487 (2629)
+. ..+|.++..+.++++.||+.|..++..++..-+.. .+ ...++.++..+...+. ...+.++.++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 22 47999999999999999999999999987643322 11 3467888888876543 345667788888876
Q ss_pred hC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccc
Q 000049 1488 CA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2629)
Q Consensus 1488 ~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2629)
.. +.........++|.|..++.+.+++|+..|+++|..++..-. +.. +.+
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i------ 270 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMV------ 270 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHH------
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHH------
Confidence 43 222223346788999999999999999999999999975321 100 000
Q ss_pred ccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-chHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
.-..++|.|...+.+.+..++..++.++++++.. +..... -.-...++.+..++.++++.+|..|+.+|+.
T Consensus 271 ------~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 271 ------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp ------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred ------HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0113466677777778888999999999998753 211100 0112456667778889999999999999999
Q ss_pred HHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHHH
Q 000049 1646 LIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGY 1716 (2629)
Q Consensus 1646 l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~a 1716 (2629)
++....+. .-..++|.|+..+.+.+ ..+|..++.+++.++.....+.. ...++.+.+.+.++++.++..+
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 97632221 11357888888887654 56888999999998876544432 3568899999999999999999
Q ss_pred HHHHHHhhhh
Q 000049 1717 LTLFKYLPRS 1726 (2629)
Q Consensus 1717 ~~~l~~L~~~ 1726 (2629)
+.++..+...
T Consensus 422 L~aL~nil~~ 431 (510)
T 3ul1_B 422 LDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.31 E-value=2.5e-09 Score=145.73 Aligned_cols=514 Identities=13% Similarity=0.072 Sum_probs=306.1
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC
Q 000049 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~ 1977 (2629)
+...|..+..-+-.+ ...|.++. ...+.+.+.+.+++...|..+..++..+.... .+.+--+++.+.+-+.|+
T Consensus 51 ~~~~k~~~l~Kli~l-~~~G~d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-----~e~~~L~iN~l~kDl~~~ 123 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFI-FLLGHDID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-----SELIRLINNAIKNDLASR 123 (621)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCCCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-----HHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHH-HHcCCCCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-----cHHHHHHHHHHHHhcCCC
Confidence 344444443333222 22455543 33444555778888888888877776543221 123344567778888888
Q ss_pred cHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHH
Q 000049 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHAL 2057 (2629)
Q Consensus 1978 d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL 2057 (2629)
++.+|..|..+++.+.. +
T Consensus 124 n~~ir~lALr~L~~i~~---~----------------------------------------------------------- 141 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS---R----------------------------------------------------------- 141 (621)
T ss_dssp CHHHHHHHHHHHHHHCC---H-----------------------------------------------------------
T ss_pred CHHHHHHHHHHhhccCC---H-----------------------------------------------------------
Confidence 88888888777766521 1
Q ss_pred HHHHHHhCCChhhhHhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhcccccHH--HHHHHHHhhcCCCChhHHHHHH
Q 000049 2058 GALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQASIRRSSA 2133 (2629)
Q Consensus 2058 ~~La~~~g~~l~~~l~~il~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~~~--~ll~~Ll~~l~d~~~~vR~~a~ 2133 (2629)
...+.++|.+.+.+ .+.++.||..|.-|+..+.... ++.+. .+++.+.+.+.|.|+.++.+|+
T Consensus 142 ------------e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 142 ------------EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAAT 208 (621)
T ss_dssp ------------HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHH
Confidence 12334556667777 7889999999999998888743 33333 6777788888899999999999
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHH
Q 000049 2134 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2629)
Q Consensus 2134 ~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~-------------d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l 2200 (2629)
.++..++...+..+.++++.+++.|..++.+. ++-.+-.....+..+......+....+.+.+.+.+
T Consensus 209 ~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il 288 (621)
T 2vgl_A 209 SLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETIL 288 (621)
T ss_dssp HHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999998877777777777777776665432 23333333333333221100000001111111111
Q ss_pred hhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCC--HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH
Q 000049 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2629)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~--~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2629)
....+ .|+.- .+.+.+ ..+-..++.++-.+ .+ ..++......+|.+
T Consensus 289 ~~~~~-----------------~~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~---~~~~~~~~~~~L~~ 336 (621)
T 2vgl_A 289 NKAQE-----------------PPKSK---------KVQHSNAKNAVLFEAISLIIHH---DS---EPNLLVRACNQLGQ 336 (621)
T ss_dssp HHHHS-----------------CCSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHH
T ss_pred Hhhcc-----------------Ccccc---------cccccchHHHHHHHHHHHHHhc---CC---cHHHHHHHHHHHHH
Confidence 11000 00000 000111 13333444444333 22 22344556677777
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000049 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2629)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~-d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~ 2357 (2629)
.+... +.++|..++.+|..++...+. .+++......|+.++. |++..+|..+...|..++. ..+++.++.+|...
T Consensus 337 ~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~y 412 (621)
T 2vgl_A 337 FLQHR-ETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSY 412 (621)
T ss_dssp HSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHH
Confidence 77654 789999999999999765431 1234455678888999 9999999999999888854 34688999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2629)
+...|.+.|..++.+++.+..+..... .-+.+.++.++... .+.+...+...+..+....|+-. ...+..+...
T Consensus 413 l~~~d~~~~~~~v~~I~~la~k~~~~~-~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~~~~-~~~~~~l~~~ 486 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAEKYAVDY-TWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRDDVQ-GYAAKTVFEA 486 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGCSCH-HHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCChhHH-HHHHHHHHHH
Confidence 998999999999999999988776544 45555555555432 22222333444455555555321 1123333333
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCccccCChh--HHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhH
Q 000049 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2629)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2629)
+.++.. +...+.....++.+.++.+.+.+. ..+++..+.+......+.+|..++.|+.++.... | ...
T Consensus 487 l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~----p----~~~ 556 (621)
T 2vgl_A 487 LQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF----P----EVK 556 (621)
T ss_dssp HTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC----G----GGH
T ss_pred HcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC----h----HHH
Confidence 333332 222222222444444433332211 1356677777777888999999999999986653 2 233
Q ss_pred HHHHHHHhh-cC--CCCHHHHHHHHHHHHHHHh
Q 000049 2516 DILASVVSA-LH--DDSSEVRRRALSALKSVAK 2545 (2629)
Q Consensus 2516 ~~l~~l~~~-l~--~~~~~vr~~al~~l~~~a~ 2545 (2629)
+.+..++.. .. |.+.|+|.-|..-.+-+..
T Consensus 557 ~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 444444432 33 8999999999888776643
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.30 E-value=4.2e-10 Score=152.04 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=241.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
+.+++.+. +++...+..|...+..+...- +...+...++++.|.+++....++..+..|..+|..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444443 344566677777776665321 12233345788999999976657888989999999998654321122
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCCh-----hhhHHHHHHHHHHH
Q 000049 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2629)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2629)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. .+ ...+|.++..+...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 48999999999999999999999999987543222 11 3468888888876543 34566778888887
Q ss_pred hhC-chhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000049 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2629)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2629)
... +.........++|.|..++.+.+++|+..|+++|..++..-. +.. +.+
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v----- 289 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMV----- 289 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHH-----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHH-----
Confidence 653 222223346788999999999999999999999999885321 100 000
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc-cchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM-IPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
....++|.|...+.+.+..++..++.++++++.. +.... .-.-...++.|..++.++++.+|..|+.+|+
T Consensus 290 -------~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 290 -------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp -------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred -------HhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0123566777777888889999999999998753 21110 0112346778888999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHH-----HhHhHHHHHhhcCCChhhHHH
Q 000049 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1645 ~l~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
.++....+. .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998632211 11357888888887654 55788899999998876544432 356889999999999999999
Q ss_pred HHHHHHHhhhh
Q 000049 1716 YLTLFKYLPRS 1726 (2629)
Q Consensus 1716 a~~~l~~L~~~ 1726 (2629)
++.++..+...
T Consensus 440 ~L~aL~nil~~ 450 (529)
T 3tpo_A 440 ILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887653
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.6e-11 Score=145.18 Aligned_cols=198 Identities=10% Similarity=0.201 Sum_probs=162.7
Q ss_pred HHhhhccCChhhhHHHHHHHHH-HHhhCchhh--hhhccchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcC-c----h
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N----P 1533 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~-la~~~p~~l--~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~-~----~ 1533 (2629)
+.+.+.+++|+.|+.+++.|.. ++.++|+.. ...+.+++..+.+.+ +|+|..||..|+++|+.+++.++ . +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566789999999999999999 987777765 455678899999999 89999999999999999999887 2 5
Q ss_pred hHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCCh-hhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000049 1534 EIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2629)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~-~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2629)
+...++|.++..+.|....+++ |++.+... ...... +++..+++.+...+.+.+|.+|..+..+++.++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 7788999999999998887763 44444321 111111 2377899999999999999999999999999998644
Q ss_pred CC-CcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000049 1609 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2629)
Q Consensus 1609 ~~-~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~L 1662 (2629)
.. ..+.+|+ +.++|.+.+.+.|++++||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666644
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.21 E-value=2.6e-05 Score=110.51 Aligned_cols=420 Identities=10% Similarity=0.046 Sum_probs=223.9
Q ss_pred HhhhHHHHHHHHHHHhcCCCH----------------------HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--C
Q 000049 1879 LKEIMPVLMNTLISSLASSSS----------------------ERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--D 1934 (2629)
Q Consensus 1879 l~~~l~~Ll~~L~~~L~~~~~----------------------~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d 1934 (2629)
+.+++..+...++..+.-|.+ ..+..-..+|..+..-.+......+++.+.+.+. .
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~ 490 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTE 490 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 567788888888888774421 1122223344444332334456666777765544 3
Q ss_pred CChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHhC--hhhhhhhHHH
Q 000049 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-----ILEVRESAGLAFSTLFKSAG--MQAIDEIVPT 2007 (2629)
Q Consensus 1935 ~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-----d~~VR~~A~~al~~l~~~~g--~~~~~~ilp~ 2007 (2629)
.+|..+.+.|+++|.+.....++.-.++++++++.+......+ .+.++...+..+|++.+... ...++.++..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~ 570 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK 570 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence 5689999999999998655554445578888888888766443 23455555567777666543 3456666777
Q ss_pred HHHhccCcC--chhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC
Q 000049 2008 LLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD 2085 (2629)
Q Consensus 2008 Ll~~L~~~~--~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~ 2085 (2629)
+++.+.+.. ..+.|-+++..++..+...+... ......||+..|+..+.....+
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~------------------------~~~e~~p~i~~il~~~~~~~~~ 626 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQV------------------------QVGEVMPFIDEILNNINTIICD 626 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSC------------------------CTTCSSCHHHHHHTSHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhc------------------------cccccchHHHHHHHHHHHHHHh
Confidence 776665432 23334444444443222211110 0011245666666666655555
Q ss_pred CCHHHHHHHHHHHHHHHhhccccc-----HHHHHHHHHhhcCC------------CChh-HH--HHHHHHHHHHHHhchh
Q 000049 2086 DDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGD------------NQAS-IR--RSSAYLIGYFYKNSKL 2145 (2629)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~-----~~~ll~~Ll~~l~d------------~~~~-vR--~~a~~~L~~l~~~~~~ 2145 (2629)
=.+.-.....++++.++...+.+. +..+|+........ .|+. ++ ...+.+....|...+.
T Consensus 627 l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~ 706 (1073)
T 3gjx_A 627 LQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH 706 (1073)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcch
Confidence 455555666777888877665422 23333222211100 1222 12 1334455566777777
Q ss_pred hhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccc----ccchHHHHHHHHhhhhhhhhhhhcCCcccccCC
Q 000049 2146 YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAISTSRDKERRKKKGGPILIPGF 2221 (2629)
Q Consensus 2146 ~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~----l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~ 2221 (2629)
.+.+++..+++.++...+ ...+.++..+...+... ....+..++..+-..-.. . +...
T Consensus 707 ~f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~----~------i~~~ 768 (1073)
T 3gjx_A 707 PFVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISG----W------VSRS 768 (1073)
T ss_dssp GGHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHH----H------HTTC
T ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHH----H------HhcC
Confidence 888888888777765442 11112211111111110 001111122111111000 0 0000
Q ss_pred CCcc-cchhhHHHHHHHH----hcCCHHHHH-HHHHHHHHHHhhcChhhhhhchhhhhHHH----HHHhcC--CCCHhHH
Q 000049 2222 CLPK-ALQPLLPIFLQGL----ISGSAELRE-QAALGLGELIEVTSEQSLKEFVIPITGPL----IRIIGD--RFPWQVK 2289 (2629)
Q Consensus 2222 ~l~k-~l~~ilp~ll~~L----~~~~~~~r~-~aa~~L~~l~~~~~~~~l~p~v~~i~~~L----i~~l~~--~~~~~vk 2289 (2629)
..++ -...++|.+++.+ ....++.|. ..+.+.+.+++..| ..+.|.++.|...+ +..+.+ ..-++.|
T Consensus 769 ~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~-~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r 847 (1073)
T 3gjx_A 769 NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDAVFECTLNMINKDFEEYPEHR 847 (1073)
T ss_dssp SCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHG-GGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred CCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHhCCcccCcHHH
Confidence 0000 0122333333332 223344443 45778888888887 57778777776543 344443 2368899
Q ss_pred HHHHHHHHHHHHhcCCCccCchH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000049 2290 SAILSTLSIIIRKGGIALKPFLP----QLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2629)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~lp----~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~ 2341 (2629)
..-+..+..+..++...+-..-+ .++..++-++.++++++-..+...+-.+.
T Consensus 848 ~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 848 TNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 99999999999887664443323 35556667788888888888887777663
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.15 E-value=1.9e-09 Score=132.95 Aligned_cols=241 Identities=17% Similarity=0.121 Sum_probs=159.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
.++.|.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..+..++..+.. .+..+..
T Consensus 24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 355666777765 7888888888777654 1 2567778888889999999988888876632 1223444
Q ss_pred hHHHHHh-hhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1459 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1459 ilp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
+++.+.+ .+.++++.+|..++.+|+.+....|.. -+.+++.+...++|+++.||..|+.+|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 5555553 356778888888888888887544322 24567788888888888999888888887764 13
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2629)
.+|.|...+.|++..+| .++..+.... . .-..++|.+...+.|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 56777777777777776 4555554310 0 013456677777777777788777777776541
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCC
Q 000049 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~ 1671 (2629)
+..++.+...+.|++ ||..++.+++.+.. +..+|.|.+.+.++..
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSC
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCC
Confidence 135566666666643 77777777776532 3566777666655443
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.14 E-value=4e-06 Score=113.92 Aligned_cols=333 Identities=16% Similarity=0.136 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhc
Q 000049 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667 (2629)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~---d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~ 1667 (2629)
..+-.|...+|.+.. ++.++ .+..+.+.+. ..++.+|..|+.++|.+....+. +.+..|...+.
T Consensus 373 ~~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~ 439 (963)
T 4ady_A 373 WAKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIV 439 (963)
T ss_dssp HHHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHc
Confidence 345666667776654 33222 3334444443 56789999999999999877664 35555666665
Q ss_pred cCC-------ChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1668 SDN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1668 ~~~-------~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
++. ...+|.+++.+||.+..+.+.+. +++.+...+.+.+..+|+.+..+++.+-.-.|. ...+..++.
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee---v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~ai~~LL~ 514 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE---VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PEAIHDMFT 514 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH---HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HHHHHHHHH
Confidence 543 24588899999998776666542 333344444455667788887777766433333 233444444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCC
Q 000049 1741 AILDGLADENESVRDAALGAGHVLVEHYA-TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2629)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~iv~~~~-~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ 1819 (2629)
.+. .+.++.+|..+.-+++.+. ++ ++.++.++..+. .+.+|-+|.+++-++|--. .|. ++
T Consensus 515 ~~~---e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~L~---~~~dp~vRygaa~alglAy---aGT--------Gn 575 (963)
T 4ady_A 515 YSQ---ETQHGNITRGLAVGLALIN--YGRQELADDLITKML---ASDESLLRYGGAFTIALAY---AGT--------GN 575 (963)
T ss_dssp HHH---HCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHT---TTS--------CC
T ss_pred HHh---ccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHh---cCC--------CC
Confidence 433 3567888888877776552 22 234555555443 3578889998877666421 111 00
Q ss_pred CCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcCCCH
Q 000049 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2629)
Q Consensus 1820 ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~~~~ 1899 (2629)
....+. .|..+.+|.+..||+.|+..++.+.-..+.. .+.++.. ...+.++
T Consensus 576 -------~~aIq~---------------LL~~~~~d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~---L~~~~d~ 626 (963)
T 4ady_A 576 -------NSAVKR---------------LLHVAVSDSNDDVRRAAVIALGFVLLRDYTT----VPRIVQL---LSKSHNA 626 (963)
T ss_dssp -------HHHHHH---------------HHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTT---GGGCSCH
T ss_pred -------HHHHHH---------------HHHHhccCCcHHHHHHHHHHHHhhccCCHHH----HHHHHHH---HHhcCCH
Confidence 001111 1223346778889999999999876555432 3333222 2357889
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcC--C
Q 000049 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2629)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d--~ 1977 (2629)
.+|..|..+||.+....+ .+.++..|.....|++..||++++.+||.+..... +...+.+.+++..+.+...| .
T Consensus 627 ~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn-na~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT-EKLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC-TTTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHHHHHHHhcccc
Confidence 999999999998764332 25667778888899999999999999998755432 23334556666666677765 5
Q ss_pred cHHHHHHHHHHHHHHH
Q 000049 1978 ILEVRESAGLAFSTLF 1993 (2629)
Q Consensus 1978 d~~VR~~A~~al~~l~ 1993 (2629)
|+.+|..+.-|.|.+.
T Consensus 703 d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN 718 (963)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7888988888888775
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.11 E-value=2.9e-09 Score=131.39 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=186.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccch
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2629)
.++.++..+.|+++.||..|..++..+. -...+|.+++.+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4677888899999999999988888773 2457888999999999999999999998875321 123445
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
++.+. .+++|+++.||..|+++|+.++.... ......++.|...+.|++..+| .++..+.... . ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------D---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------C---HHHH
Confidence 56555 35789999999999999999985432 2345778999999999999988 5677765421 1 2367
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~l 1658 (2629)
|.|...+.+.++.+|..++..++.+.. . -+..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 888889999999999999999988742 1 1357788889999999999999999999865 2467
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcC-CChhhHHHHHHHH
Q 000049 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2629)
Q Consensus 1659 l~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~a~~~l 1720 (2629)
++.|...+.++. +|..++.+++.+. . +..+|.+.+.+.+ .++.++..++..+
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i~----~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhcC----c---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 788888877643 6777777777653 2 2566777777654 4555555444433
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=3.5e-09 Score=145.73 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHhhChhH-H-HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhcc--chHhhHHhHHHHHHhhcCCC
Q 000049 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2629)
Q Consensus 1674 ~R~~a~~~L~~i~~~~g~~~-l-~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~ 1749 (2629)
.+..++..++.+...-+... . ..++..+.+.+.+.... ++++.++..++...+. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45667777777766432221 1 35666777777765444 9999999999987764 78999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCC-chHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHH
Q 000049 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2629)
Q Consensus 1750 ~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~-~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~ 1828 (2629)
...||.+|..+...++..++..++..++|.+..++.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999874321
Q ss_pred HHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh-hhHhhhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000049 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2629)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2629)
..+. ..+.++++.+..+.+|.-.+|..+|..++..++.... ..+.+++|. |++++.+++. .-.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~----~~~~~~~p~~-----~~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS----LIQCIADPTE-----VPE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH----HHHHHHCTTH-----HHH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH----HHHHhcChhh-----hHH
Confidence 1111 1445688888888999999999999999999887433 445566555 5556677754 122
Q ss_pred HHHHHH-----HHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhc-hhhHHHhHHHHHHHHHHHhc-CCcHH
Q 000049 1908 ALGELV-----RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2629)
Q Consensus 1908 ~L~~lv-----~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~-d~d~~ 1980 (2629)
|+..+. ..+....+.-+.|.|.++|+++...+++.++..+.+++.-+. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 222221 222334577899999999999988888888877777766543 45678999999999998765 46999
Q ss_pred HHHHHHHHHHHHHHHhCh
Q 000049 1981 VRESAGLAFSTLFKSAGM 1998 (2629)
Q Consensus 1981 VR~~A~~al~~l~~~~g~ 1998 (2629)
+|+.|.+|+..+.+..+.
T Consensus 311 ~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999876443
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.07 E-value=1.3e-05 Score=109.11 Aligned_cols=261 Identities=19% Similarity=0.174 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC
Q 000049 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2629)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~ 1669 (2629)
..+|..|+-.+|-+.-..++ +.+++.|...+.+.+..+|..|+.++|.+.-..|. .+.+..|+..+.++
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---~~ai~~LL~~~~e~ 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---PEAIHDMFTYSQET 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHhcc
Confidence 46777888888876432122 34677778888888888899999999988654443 24444555555455
Q ss_pred CChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhc-CCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCC
Q 000049 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2629)
Q Consensus 1670 ~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2629)
.....|+.++.+|+.+.- |.. +..+.+++.+. +.++.+|.+++.+++.-....|. ...++.++..+ ..|
T Consensus 520 ~~e~vrR~aalgLGll~~--g~~---e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~---~~d 589 (963)
T 4ady_A 520 QHGNITRGLAVGLALINY--GRQ---ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVA---VSD 589 (963)
T ss_dssp SCHHHHHHHHHHHHHHTT--TCG---GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHH---HHC
T ss_pred CcHHHHHHHHHHHHhhhC--CCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHh---ccC
Confidence 556688888888887643 332 22344444433 57899999999888866555555 22333333333 347
Q ss_pred CChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhh-ccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHH
Q 000049 1749 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2629)
Q Consensus 1749 ~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~-~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~ 1827 (2629)
.+++||.+|.-+++.+.-. .++ ..|.+.. ...+.++.+|.++...+|.+- .|.
T Consensus 590 ~~d~VRraAViaLGlI~~g-~~e----~v~rlv~~L~~~~d~~VR~gAalALGli~---aGn------------------ 643 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLR-DYT----TVPRIVQLLSKSHNAHVRCGTAFALGIAC---AGK------------------ 643 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSS-SCS----SHHHHTTTGGGCSCHHHHHHHHHHHHHHT---SSS------------------
T ss_pred CcHHHHHHHHHHHHhhccC-CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhc---cCC------------------
Confidence 7889999998888765321 112 2333333 445778999999999998762 000
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC--CCHHHHHHH
Q 000049 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVA 1905 (2629)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~--~~~~~R~~A 1905 (2629)
...+++..|.....|.+..||+.|+..++.+...+.....+.+..++..+.+...+ .+...|..+
T Consensus 644 -------------~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 644 -------------GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp -------------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred -------------CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 00123333334468999999999999999998766655444555555555555543 344455555
Q ss_pred HHHHH
Q 000049 1906 GRALG 1910 (2629)
Q Consensus 1906 ~~~L~ 1910 (2629)
.-+.|
T Consensus 711 ~iAqG 715 (963)
T 4ady_A 711 CVAQG 715 (963)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 61
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.05 E-value=3.3e-07 Score=134.58 Aligned_cols=533 Identities=13% Similarity=0.103 Sum_probs=293.0
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhccCCchHHHHHHH--------HHHhhcCC
Q 000049 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2629)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~--------~~w~~~~~ 1126 (2629)
.++.++|..+++| |+.+|.+|++.|++.... |........+. ...+.+..+|.+|. ..|...+.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3578889899998 778899999999876421 11111121211 22344566666654 34765543
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000049 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2629)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2629)
+.++.+ ..+++.+.+ ....+|++++++++.++. .||+.|++++..+.+.... +...+.+.
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 333345 667776643 468999999999999865 6888888888888876431 11457888
Q ss_pred HHHHHHhhhhc-CCCChhHHHHHHHhhhcCCCcHHHHHH-HHHHHHHHHHhhCccchhhhHHHHHHHhccc---------
Q 000049 1198 ALALHSAADVL-RTKDLPVIMTFLISRALADTNADVRGR-MLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--------- 1266 (2629)
Q Consensus 1198 ~~~l~~l~~~~-~~~~~~~i~~~li~~~l~d~~~~Vr~~-~~~a~~~~i~~~g~~~~~~Ll~~~~~~l~~~--------- 1266 (2629)
..+|..+++.+ ..++ ... .|.. ..++. . ++++.+++.+...+...
T Consensus 154 L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~~~l----~----~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQT---------------LPP-QRRRDIQQTL----T----QNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp HHHHHHHHHHHHTSCC---------------SCH-HHHHHHHHHH----H----HTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccccc---------------hHH-HHHHHHHHHH----H----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888887642 2111 111 1111 11111 1 11333444433333210
Q ss_pred -CCC---hhhhhhHHHHHHHHHHHHHhhhccCCC-cc----hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc--c-
Q 000049 1267 -ASD---EEKYDLVREGVVIFTGALAKHLAKDDP-KV----HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E- 1334 (2629)
Q Consensus 1267 -~~~---~~~~~~vr~~~v~~~~~La~~l~~~~~-~l----~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~--~- 1334 (2629)
..+ ++....++..+ +..+..++.-.+. .+ ..+++.+...+.+ ++++.++.+||..++..-.. .
T Consensus 210 ~~~~~~~~~~~~~l~~~a---L~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAA---LNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHH---HHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred cccchhhhhhhHHHHHHH---HHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 000 01122233333 3344333321111 00 1366666666654 57899999999988854321 1
Q ss_pred --h-----HHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHhhh-----------CcchhhhhcHHHHHHHHhcC
Q 000049 1335 --A-----PTLVSRLLDQLMK-------SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLAD 1389 (2629)
Q Consensus 1335 --~-----~~ll~~ll~~L~~-------~~~~~~R~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~l~~ 1389 (2629)
. ...+..++..+.. .+++..++.-+..+..+...+ ....+ ..+++.+..+..+
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~ 362 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTH 362 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhC
Confidence 0 1122344444321 112334444444433333111 11112 2577777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHHh----ccCchhHHHHHHHHH---HHHcCCCC------------------------HHHHH
Q 000049 1390 RNSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVRE 1438 (2629)
Q Consensus 1390 ~~~~~~R~~Al~al~~La~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~ 1438 (2629)
. +...-..++.....+.+.. ...+.+++..+++.+ +..+.-+. ...|+
T Consensus 363 ~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk 441 (1204)
T 3a6p_A 363 P-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRA 441 (1204)
T ss_dssp S-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred c-cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHH
Confidence 5 4444444444334344322 123567788888888 44432111 13466
Q ss_pred HHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc-------------------------CChhhhHHHHHHHHHHHhhCchhh
Q 000049 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1439 aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
...+.++.++...+..++..+.+.+.+.+.+ ..|....+....+.++++......
T Consensus 442 ~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~ 521 (1204)
T 3a6p_A 442 QQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTL 521 (1204)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6677777777766666666666666443321 235555555556666665432211
Q ss_pred -hhhcc-chHHHHhhhh---cCCCHHHHHHHHHHHHHHhhhcCc-h-hHHhHHHHHHhccCCCCh-hHHHHHHHHHhccc
Q 000049 1494 -SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTF 1565 (2629)
Q Consensus 1494 -~~~L~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~-~~r~al~~L~~~~~ 1565 (2629)
..+++ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+
T Consensus 522 e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~----------- 590 (1204)
T 3a6p_A 522 NREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK----------- 590 (1204)
T ss_dssp CTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT-----------
T ss_pred ccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc-----------
Confidence 13333 2455555543 446899999999999998887652 3 345555555555433100 000
Q ss_pred cccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCC---HHHHHHHHHH
Q 000049 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARA 1642 (2629)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~VR~~A~~a 1642 (2629)
.. ..+.+.++|..|+.++..++..+. +.+.||++.+...+..++.... ..-+..-..+
T Consensus 591 ----~~-------------~~~~~k~vr~~a~~al~~L~~~~~--~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~ea 651 (1204)
T 3a6p_A 591 ----AP-------------RTRAVRNVRRHACSSIIKMCRDYP--QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEA 651 (1204)
T ss_dssp ----SC-------------CCHHHHHHHHHHHHHHHHHHHHCH--HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHH
T ss_pred ----cc-------------ccHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHH
Confidence 00 000124789999999999998653 4789999999999998887443 5566677788
Q ss_pred HHHHHhhhCCC-----CchhhHHHHHHHhcc
Q 000049 1643 IGSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2629)
Q Consensus 1643 L~~l~~~~g~~-----~~~~ll~~Ll~~L~~ 1668 (2629)
++.++..+++. ++..+++.+.+.+.+
T Consensus 652 l~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 652 LVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 88886655543 355666666666554
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=1.5e-08 Score=118.06 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=154.0
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
+.++-....+.++..+.|+++.||..|..++..+.. ...+|.+++.+.+++|.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 334455778899999999999999999999887632 3568889999999999999999999988742
Q ss_pred hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh
Q 000049 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2629)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~ 1572 (2629)
+..++.+...++|+++.||..|+++|+.++. + ..++.+.+.+.|++..+| .++..+....
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 3567888999999999999999999999864 2 466778888899998888 5666665421
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
-...++.|...+.+.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+-
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13467888899999999999999999998732 347788888889999999999999998754
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.9e-06 Score=111.89 Aligned_cols=477 Identities=12% Similarity=0.084 Sum_probs=284.7
Q ss_pred HhhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000049 1121 WDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2629)
Q Consensus 1121 w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2629)
.....+.+++ +.-|+.++. .....+|..+.-+++...+.+++.+.+.+...++.......... .-.....+.
T Consensus 160 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~-----~~~~~~~~~ 233 (778)
T 3opb_A 160 LNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDV-----GNDPLSIIV 233 (778)
T ss_dssp HHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----SSCHHHHHH
T ss_pred HHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCC-----CCccHHHHH
Confidence 3445566654 666777554 57889999999999988888888887777777764331111100 012223334
Q ss_pred HHHHHhhhh--------cCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCccchh-hhHHHHHHHhcccCCC
Q 000049 1199 LALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVS-LLFPIFENYLNKKASD 1269 (2629)
Q Consensus 1199 ~~l~~l~~~--------~~~~~~~~i~~~li~~~l~d~~~~Vr~~~~~a~~~~i~~~g~~~~~-~Ll~~~~~~l~~~~~~ 1269 (2629)
.++..+.+. |-.+. +.+.+.......++..+..++++.+... +..+..+ .+...+..|+...-+.
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~---~~~~l~~~~~~~~~~~~~~a~L~lLsaA---Ci~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKG---LSKLFKKRVFEEQDLQFTKELLRLLSSA---CIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTT---HHHHHHHHHHSSCCHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCHHHHHHHHcccc---HHHHHHHHHhcccchHHHHHHHHHHHHH---hCCcHHHHHHHHhHHHHHHHHhcc
Confidence 444444332 22222 2222322222345566666665554322 2222222 2223333444331111
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhccCCCcchhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhh--hccc---hHHHHHHHHH
Q 000049 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVSRLLD 1344 (2629)
Q Consensus 1270 ~~~~~~vr~~~v~~~~~La~~l~~~~~~l~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~--~~~~---~~~ll~~ll~ 1344 (2629)
+.+|..+...+..+...-...+..+..+.+.+.+.+.++..+.+..+.+.|.-+-.. +++. ....+..|++
T Consensus 308 ----~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ 383 (778)
T 3opb_A 308 ----EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLT 383 (778)
T ss_dssp ----GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHH
Confidence 346665555555555433333456678889999999987765577777777655321 1221 2455667777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCc----------------------------------------chhhhhcHHHHHH
Q 000049 1345 QLMKSDKYGERRGAAFGLAGVVKGFGI----------------------------------------SSLKKYGIAATLR 1384 (2629)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~----------------------------------------~~l~~~~i~~~L~ 1384 (2629)
.+...++...-.+++..|..+...... ..+...++++.|.
T Consensus 384 llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv 463 (778)
T 3opb_A 384 MIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLK 463 (778)
T ss_dssp HHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHH
Confidence 776434445666666666666653221 0011225677777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh----
Q 000049 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG---- 1455 (2629)
Q Consensus 1385 ~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~---- 1455 (2629)
..+.+. ++..|+.++.++..++... .....+. ..++.++..+.+.... +|..|..++..+.-...+..
T Consensus 464 ~Ll~S~-s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~ 540 (778)
T 3opb_A 464 REMHNL-SPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK 540 (778)
T ss_dssp HHGGGS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSS
T ss_pred HHHcCC-CHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCC
Confidence 777766 7899999999999998542 1223332 4788899988776544 89889888888875444332
Q ss_pred --HHhhHHHHHhhhcc-CCh-------------hhhHHHHHHHHHHHhhCc---hhhhh-hcc--chHHHHhhhhcCCCH
Q 000049 1456 --VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLTDTHP 1513 (2629)
Q Consensus 1456 --v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~la~~~p---~~l~~-~L~--~ivp~L~~~L~D~~~ 1513 (2629)
....+|+|++.|.. ..- ..+..|+.+|.+++.... +.... -+. +.+|.+..++.+.+.
T Consensus 541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~ 620 (778)
T 3opb_A 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV 620 (778)
T ss_dssp SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSH
T ss_pred CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCH
Confidence 13678999988872 211 227789999999998642 22222 232 478999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCchhH--HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHH
Q 000049 1514 KVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2629)
Q Consensus 1514 ~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~ 1591 (2629)
.||.+|++++.+++.. ++. +. .....+ +.-..-++.+...++..+.+
T Consensus 621 ~VrrAA~elI~NL~~~---~e~i~~k-------~~~~~~---------------------~~~~~rL~lLV~Ll~s~D~~ 669 (778)
T 3opb_A 621 PLQRSTLELISNMMSH---PLTIAAK-------FFNLEN---------------------PQSLRNFNILVKLLQLSDVE 669 (778)
T ss_dssp HHHHHHHHHHHHHHTS---GGGTGGG-------TSCCSS---------------------HHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHH-------HHhhcC---------------------chhhccHHHHHHHHcCCCHH
Confidence 9999999999999852 210 00 000000 11111245666777778899
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccchH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 000049 1592 TKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+|++|+.++.++... .+......+ ...++.+..++.+ +++++|..++.++..++..
T Consensus 670 ~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 670 SQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 999999999998642 211111111 2466777777777 8999999999999999973
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.92 E-value=2.3e-08 Score=117.44 Aligned_cols=186 Identities=19% Similarity=0.209 Sum_probs=134.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccc
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2629)
..++.++..+.|+++.||..+..++..+.. ...+|.+++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 457778888899999999999888877632 3567888888888899999999999988742 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000049 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2629)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2629)
.++.+...++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..|.... -...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG---------DERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------CGGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------CHHHH
Confidence 67888888999999999999999988864 2356677777777777776 4555554311 02356
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000049 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2629)
Q Consensus 1579 p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~ 1650 (2629)
+.|.+.+.|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788887777777632 345666777777777788888887777765543
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=7e-09 Score=143.36 Aligned_cols=219 Identities=14% Similarity=0.068 Sum_probs=116.5
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000049 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2629)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2629)
..++|.+.. |++++++.|..+|.+|++++.......+..+.+.+.+.+...+.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 356676654 7889999999999999998753322222222234555667789999999999999999999988887665
Q ss_pred hh-----hHHHHHHhccCcCchhHHHHHHHHHHhhhccCcCcccchhhhcCCCchhHHHHHHHHHHHhCCChhhhH-hhh
Q 000049 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2629)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~~La~~~g~~l~~~l-~~i 2075 (2629)
+. ++|.|+..|+........+..............++.+. .....++.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDIT---------GSLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHH---------HHHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHhccc
Confidence 44 67777766643211000000000000000000000000 0112344445543222222211 245
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH-Hhch
Q 000049 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVI-------DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY-KNSK 2144 (2629)
Q Consensus 2076 l~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~-------~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~-~~~~ 2144 (2629)
+|.++..+. ....+++..+..|+..+...- ..++...++..++...++.++. |..++..+.+++ ....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhhhh
Confidence 566666552 234678888888888776532 1122233445555544444444 555555555554 3333
Q ss_pred hhhhhhH
Q 000049 2145 LYLVDEA 2151 (2629)
Q Consensus 2145 ~~~~~~~ 2151 (2629)
.+++.+.
T Consensus 263 ~d~s~~~ 269 (684)
T 4gmo_A 263 MDHSPGK 269 (684)
T ss_dssp BTTBCCG
T ss_pred hhcchhh
Confidence 4444443
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.84 E-value=4.1e-05 Score=102.19 Aligned_cols=553 Identities=13% Similarity=0.112 Sum_probs=290.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.++..|+..+...++.+.+ --+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+...+.+..+.. +.
T Consensus 132 ~ll~~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~-~~ 206 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTHVT-YLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKD-FD 206 (778)
T ss_dssp HHHHHHHHHHHHTCSSCHH-HHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhcCCCcchh-HHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchH-HH
Confidence 5666666666533344322 3444444555555544433 22222222 224566788887766666665544433 33
Q ss_pred hhHHHHHh-hh----ccCChhhhHHHHHHHHHHHhhCchhhhhh-c-cchHHHHhhhh-cCCCHHHHHHHHHHHHHHhhh
Q 000049 1458 LVLPSLLK-GL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQC-L-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1458 ~ilp~Ll~-~L----~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
..+-.+++ .+ .+..-..-..++.++..+.-..|.....- + .+..+.+.+.+ ......+..++.+.|...+..
T Consensus 207 ~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~ 286 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID 286 (778)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC
Confidence 33333333 22 11111222233444444333344432221 1 34556666555 344566667776666665532
Q ss_pred cCchh--HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1530 IKNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1530 ~~~~~--i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
-...+ .+.+++.|...+.+ +.+| .|.-.|.+..........+...+.+.+.+.+.+.+.+.++.|.+.+..+.-.
T Consensus 287 ~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 287 ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 22222 26677788777765 3455 3444444321111222345567888899999887666688888888776431
Q ss_pred cCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHhc-cCCChHHHHHHH
Q 000049 1607 VTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK-SDNSNVERSGAA 1679 (2629)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~-----~~~~ll~~Ll~~L~-~~~~~~~R~~a~ 1679 (2629)
.+.++....-+.++..|...+.+ .+..+-..+...|..+....... .+..+.++.-.... .+...... ...
T Consensus 365 -~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~ 442 (778)
T 3opb_A 365 -ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAK 442 (778)
T ss_dssp -SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHH
T ss_pred -HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cch
Confidence 11111111224567777788874 56677788888888887754421 11122211111000 00000000 000
Q ss_pred HHHHH-HHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhh-H-HhHHHHHHhhcCCCChh---H
Q 000049 1680 QGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-L-QQVLPAILDGLADENES---V 1753 (2629)
Q Consensus 1680 ~~L~~-i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~-l-~~ii~~ll~~L~d~~~~---V 1753 (2629)
..+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..- ..... + ...+++++..+....+. +
T Consensus 443 ~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 443 EDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHH
T ss_pred HHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHH
Confidence 11111 1111110 347888899898999999999999999998542 22222 2 24788899888766543 7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHH
Q 000049 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2629)
Q Consensus 1754 R~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l 1833 (2629)
|..|..++..+.-...+. +. +.. ... ..++.-+-.++.. +. +.+...
T Consensus 518 k~~AA~ALArLlis~np~--------~~---f~~-~~~-~~aI~pLv~LL~~--~~--------~~~~~~---------- 564 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPG--------LI---FKK-YSA-LNAIPFLFELLPR--ST--------PVDDNP---------- 564 (778)
T ss_dssp HHHHHHHHHHHHHTSCHH--------HH---SSS-SCS-TTHHHHHHHTSCC--SS--------SCSSCC----------
T ss_pred HHHHHHHHHHHHhcCCHH--------HH---cCC-Ccc-ccchHHHHHHcCC--CC--------Cccccc----------
Confidence 888888888776432211 10 000 000 0122222222210 00 000000
Q ss_pred HHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcCh---hhH-hhhHH--HHHHHHHHHhcCCCHHHHHHHHH
Q 000049 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGR 1907 (2629)
Q Consensus 1834 ~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~---~~l-~~~l~--~Ll~~L~~~L~~~~~~~R~~A~~ 1907 (2629)
++ ........-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+|..|++
T Consensus 565 ---------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~e 628 (778)
T 3opb_A 565 ---------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628 (778)
T ss_dssp -------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred ---------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHH
Confidence 00 0000111224456667777776541 222 23444 47888888999999999999999
Q ss_pred HHHHHHHHhcc---chh----hh---HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhH--HHHHHHHHHHhc
Q 000049 1908 ALGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALC 1975 (2629)
Q Consensus 1908 ~L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~ 1975 (2629)
++..++..... .+. +. =++.|...+...+.++|.+++.+|+.+..... ......+ ...++.+...+.
T Consensus 629 lI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP-LIAKELLTKKELIENAIQVFA 707 (778)
T ss_dssp HHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHh
Confidence 99999863321 121 11 16778888888999999999999987643221 1111111 346667777777
Q ss_pred C--CcHHHHHHHHHHHHHHHH
Q 000049 1976 D--SILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1976 d--~d~~VR~~A~~al~~l~~ 1994 (2629)
+ .++++|..++.++..+..
T Consensus 708 ~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 708 DQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HTTTCHHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHH
Confidence 7 899999999999998886
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.80 E-value=2.7e-07 Score=121.68 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=221.6
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh---
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE--- 1534 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~--- 1534 (2629)
.+|.++..|.++++..+..|+.+|..++...+..- .-.-.+.+|.|+++|.++++.++..|+++|..++.. +++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 36788888888888899999999999886544321 222357899999999999999999999999999874 232
Q ss_pred -H--HhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh--------cC--------CCHHHH
Q 000049 1535 -I--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETK 1593 (2629)
Q Consensus 1535 -i--~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L--------~d--------~~~~vr 1593 (2629)
+ ...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 356899999998 6666665 5555554322222211222236778888877 22 235666
Q ss_pred HHHHHHHHHHhhhcCCCCcccchH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh---------------
Q 000049 1594 KKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM--------------- 1650 (2629)
Q Consensus 1594 ~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~VR~~A~~aL~~l~~~~--------------- 1650 (2629)
+.++.++.+++.. ++...... +..++.|..++.+ ++..++..+..++..+....
T Consensus 161 ~~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 161 FNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 7999999999863 11111111 2466666666653 34456666666665553110
Q ss_pred -------------------------------------CCC--CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh
Q 000049 1651 -------------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2629)
Q Consensus 1651 -------------------------------------g~~--~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~ 1691 (2629)
|-+ ...+.++.|+..+.+......+..++.+|+.++.+-+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 000 12356777778787766566677788889988764432
Q ss_pred h-------HH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH-HhHHHHHHhhcCCCC------hhHHH
Q 000049 1692 V-------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------ESVRD 1755 (2629)
Q Consensus 1692 ~-------~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~------~~VR~ 1755 (2629)
. .+ ...+|.+++.+.+++..+|..++.++..++.. ......+ ...+|++.+.|...+ +++..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 1 12 35689999999999999999999999999863 3333333 358999999998653 35666
Q ss_pred HHHHHHHHHHHHhhhc--hh--hhHHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000049 1756 AALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2629)
Q Consensus 1756 ~al~al~~iv~~~~~~--~i--~~llp~l~~~l~d~-~~~vR~sa~~ll~~l 1802 (2629)
.++.++..++..-+.. .+ .-.+|.+.+.+.+. +.+++..+..++..+
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777777766422211 11 12567777777777 788888887777654
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.78 E-value=1e-07 Score=111.81 Aligned_cols=185 Identities=22% Similarity=0.200 Sum_probs=147.3
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
..++.|.+.+.+. ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+.. .
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567788888876 89999999888776532 2457788889999999999999988887732 3
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..+|.+++.|.++++.+|..++.+|+.+.. +..++.+..+++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 567888899999999999999999998753 4567888999999999999999999999864 24
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
.++.|...+.|++..+| .++..|.... -...++.|...+.+.++.+|..|..+++.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888888999999888 5666665421 145678888888999999999999999887654
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.77 E-value=4.6e-07 Score=94.83 Aligned_cols=215 Identities=17% Similarity=0.285 Sum_probs=164.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccc
Q 000049 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2629)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2629)
..++..++..+.|+-|.+|.+|+..+..+.+..+.-+ ..++..|+.++. +..-...+....+++.+..-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888999999999999999999987655433 455666666654 434444444555555554321
Q ss_pred cchHHHHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhch
Q 000049 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2629)
Q Consensus 2190 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2629)
|+-+.+++|.+.....-|++..|.....+|+++....| ..+.
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~--- 143 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMA--- 143 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHH---
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHH---
Confidence 34566788888888888999999999999999997765 3333
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhH
Q 000049 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2629)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ 2349 (2629)
.+..-+...+.++ +..-|.++|.+++.++......+.||+|.|.. .|.|.++-||.+|..+|++++...|.+.+
T Consensus 144 -~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~a----LL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 144 -SIVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRIIN----LLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp -HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHG----GGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred -HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHHH----HHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 3334445566654 67889999999998887766677888887654 67899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Q 000049 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2629)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2629)
.+...++.++++...++..+-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888876653
No 70
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.76 E-value=1.6e-07 Score=113.59 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--- 1454 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--- 1454 (2629)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456777788776 6889999999999988654422222222 58999999999999999999999999886542221
Q ss_pred hH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc
Q 000049 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
.+ ...+|.++..+.++++.++..++.+|+.++...+...... -.+.+|.+.+++.++++.||..|+.+|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 11 3578999999999999999999999999997555432211 2468999999999999999999999999998532
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCc
Q 000049 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2629)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2629)
+... +.+. -..++|.+...+.+.++.+|..++.++++++.. .+..
T Consensus 160 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAI---------------------KAIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHH---------------------HHHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHH---------------------HHHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 1110 0000 023566777777777889999999999998862 2111
Q ss_pred ccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
.... -..+++.+..++.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2457899999999999999999999999999865543
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.76 E-value=1.4e-07 Score=109.70 Aligned_cols=184 Identities=22% Similarity=0.198 Sum_probs=147.6
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
...+.+.+.+.+. ++.+|..|+.+++.+.. ...++.++..+.|+++.||..+..++..+.. .
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------~ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 75 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------G
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4566777888877 89999999988876532 1456778888999999999999988877632 3
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..+|.+.+.|.++++.+|..++.+|+.+.. +..++.+...++|+++.||..|+.+|+.++. ..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 138 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 138 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 567888899999999999999999998743 4577888899999999999999999999864 24
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~ 1605 (2629)
.++.|...+.|++..+| .++..|.... -...++.|...+.+.++.+|..+..+++.+..
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 67888888999988888 5666665421 13467888888889999999999999987643
No 72
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.73 E-value=9.6e-08 Score=115.61 Aligned_cols=224 Identities=17% Similarity=0.170 Sum_probs=163.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
.+.+...+.++++.+|..|..++..+... ..... ...+|.+++.|.++++.++..++.+|+.++...+......
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45556667778889999999999766554 22221 3578999999999999999999999999998655543222
Q ss_pred c-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch--hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccC-
Q 000049 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 1569 (2629)
Q Consensus 1497 L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i--~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~- 1569 (2629)
. .+.+|.+..+++++++.||..|+.+|++++..-.+. .+ ...+|.|.+.+.+++..++ .++.++.........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 2 368999999999999999999999999998653322 11 3588999999999888776 566665532111100
Q ss_pred -ChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000049 1570 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2629)
Q Consensus 1570 -~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~ 1647 (2629)
..-.-..++|.+.+.+.+.++.++..++.++++++.. .+.....+ -...++.+..++.++++.+|..|..+|+.++
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 0011145789999999999999999999999999852 22111111 2347888999999999999999999998775
Q ss_pred h
Q 000049 1648 R 1648 (2629)
Q Consensus 1648 ~ 1648 (2629)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 3
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.70 E-value=3e-06 Score=111.86 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=228.1
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccc---h--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh---hC
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FG 1370 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~---~--~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~---lg 1370 (2629)
..-++.+++.|..+++++|..++.+|..+.....+. . ...++.|++.|. +.+...+..|+.+|..++.+ -.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHH
Confidence 456788899999999999999999887776422111 1 235677777765 45679999999999999864 12
Q ss_pred cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHc------------------CCC
Q 000049 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQ 1432 (2629)
Q Consensus 1371 ~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l------------------~D~ 1432 (2629)
...+.....++.|.+.+.+..+...++.+..++..|+.. ...-...+...+|.|+..+ ..+
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 233334567888888887644677788888888888752 2111122234566666644 123
Q ss_pred CHHHHHHHHHHHHHHHHhhcH--HhH---HhhHHHHHhhhcc------CChhhhHHHHHHHHHHHhhCchhh--------
Q 000049 1433 VVAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL-------- 1493 (2629)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l-------- 1493 (2629)
++.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+.+....++.+|.++++......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 578999999999888653221 111 2356677766643 355778889999998887531111
Q ss_pred -----------------hh-hccchHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcC--ch----hH--HhHHHHHHhcc
Q 000049 1494 -----------------SQ-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIK--NP----EI--ASLVPTLLMGL 1546 (2629)
Q Consensus 1494 -----------------~~-~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~--~~----~i--~~lvp~Ll~~l 1546 (2629)
.. ..+..++.++.++.+ .++.++++|+.||..++..-. .. .+ ...+|.|.+.+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 00 123557788888864 589999999999999975311 01 12 45689999999
Q ss_pred CCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhhcCCCCcccc-h
Q 000049 1547 TDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIP-Y 1616 (2629)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~--------~~~vr~~a~~~l~~l~~~~~~~~~l~~-~ 1616 (2629)
..++..++ .++.+|.............-...+|.|.+.|.+. +.++...++.++++++.. +++.... .
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~ 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLR 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 98887765 4555554322222222223356788898888764 467888999999998752 2211111 1
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000049 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~l~~ 1648 (2629)
-...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 235778888888875 78889999998888875
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.70 E-value=1.5e-06 Score=114.62 Aligned_cols=342 Identities=13% Similarity=0.098 Sum_probs=221.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000049 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2629)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2629)
++.+.+.+.+. ++..|..|+.++..++..-.. ....+. ..+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666677666 678888999999888743221 221222 57999999999999999999999999997642222 1
Q ss_pred H--HhhHHHHHhhhc-cCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhh--------cCC--------CHHHH
Q 000049 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2629)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2629)
+ ...+|.+++.|. +.+..++..++.+|..++.+ +..-.....+.+|.|+.++ .++ ++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 346899999998 77899999999999999987 3221111237888899988 322 45666
Q ss_pred HHHHHHHHHHhhhcCch-hH---HhHHHHHHhccCC------CChh-HHHHHHHHHhccc--------------------
Q 000049 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTF-------------------- 1565 (2629)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~lvp~Ll~~l~d------~~~~-~r~al~~L~~~~~-------------------- 1565 (2629)
..|+++|.+++..-.+. .+ ...+|.|...+.+ ++.. +..|+..+....+
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999751111 12 1577777776653 3322 2233332211000
Q ss_pred ----------cc----------------------cCChhhhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCC-C
Q 000049 1566 ----------VN----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2629)
Q Consensus 1566 ----------~~----------------------~~~~~~l~~i~p~L~~~L~d-~~~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2629)
.. ....-....+++.+...+.+ .++.++..++.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 00 00000112345666666654 46899999999999998631110 0
Q ss_pred cc-cchH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhccCCC-----hHHHHHHHHH
Q 000049 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2629)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~--~~~~ll~~Ll~~L~~~~~-----~~~R~~a~~~ 1681 (2629)
.+ .... ...+|.+.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1111 357899999999999999999999999998732111 124578888888876533 2234456666
Q ss_pred HHHHHHhhChh--HH--HhHhHHHHHhhcCC-ChhhHHHHHHHHHHhh
Q 000049 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2629)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~l~~~-~~~vR~~a~~~l~~L~ 1724 (2629)
++.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77776543322 12 35678888888888 8999999998887665
No 75
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.69 E-value=4.4e-07 Score=109.63 Aligned_cols=230 Identities=18% Similarity=0.160 Sum_probs=174.1
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC--cch
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2629)
.++.+++.|.++++++|..++.++..+.....+.. ...++.+++.+... +...|..|+.+|..++.... ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36788889999999999999999988865433211 24567777766554 57899999999999986421 122
Q ss_pred hhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000049 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2629)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2629)
+...+.++.+.+.+.+. ++..|..|+.++..++...+......+ ...+|.++..+.++++.+|..+..++..+...-.
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 22346788888889876 799999999999999853322111111 1579999999999999999999999998876432
Q ss_pred HH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1453 AQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1453 ~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.. .+ ...+|.+++.+.++++.++..++.+|+.++...+...... -.++++.+.+++++.++.||..|+++|.+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 22 11 4588999999999999999999999999997655533222 2568899999999999999999999999999
Q ss_pred hhcCc
Q 000049 1528 SVIKN 1532 (2629)
Q Consensus 1528 ~~~~~ 1532 (2629)
....+
T Consensus 241 ~~~~~ 245 (252)
T 4hxt_A 241 SGGWL 245 (252)
T ss_dssp HTCBC
T ss_pred cCCCc
Confidence 76543
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.68 E-value=2.4e-06 Score=112.76 Aligned_cols=342 Identities=13% Similarity=0.094 Sum_probs=204.9
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh--cCch-hH
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI 1535 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~i 1535 (2629)
+|.+++.|.+.+...+..|+..|..++...+..- .-.-...+|.|+.+|.+.++.||..|+++|.+++.. -.+. .+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 3344444444444444444444444443222210 011135679999999999999999999999999863 2222 22
Q ss_pred --HhHHHHHHhccCC-CChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh------------------cCCCHHHH
Q 000049 1536 --ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAETK 1593 (2629)
Q Consensus 1536 --~~lvp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L------------------~d~~~~vr 1593 (2629)
...+|.|+..+.+ ++..++ .+..+|.................+|.|.+.+ ...+.+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 4568888888875 444544 3333332211111111112223456665543 11246899
Q ss_pred HHHHHHHHHHhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCC--------------
Q 000049 1594 KKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGE-------------- 1652 (2629)
Q Consensus 1594 ~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~VR~~A~~aL~~l~~~~g~-------------- 1652 (2629)
..++.+|.+++..-.+ .+.+.. ...+++.|...+. +++....+.|..+|..+......
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999999999863111 011111 1234445555443 34567778888888777654210
Q ss_pred ----------C-----CchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChh------HH--HhHhHHHHHhhcCCC
Q 000049 1653 ----------E-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQR 1709 (2629)
Q Consensus 1653 ----------~-----~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~------~l--~~llp~l~~~l~~~~ 1709 (2629)
. .-...++.|+..+........+..++.+|..++.+-+.. .+ ...+|.+.+.+.+++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 0 013456777888876555667778888898887643221 12 356899999999999
Q ss_pred hhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHhhcCCC--------ChhHHHHHHHHHHHHHHHhhh--chh-h-hHH
Q 000049 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TSL-P-LLL 1777 (2629)
Q Consensus 1710 ~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~--------~~~VR~~al~al~~iv~~~~~--~~i-~-~ll 1777 (2629)
..+++.++.++.+|+...... ...-...+|.+.+.|.+. .+++...++.++..++..-.. ..+ + -.+
T Consensus 369 ~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I 447 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Confidence 999999999999999754432 122345899999999865 356777788888776632111 111 1 256
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHH
Q 000049 1778 PAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2629)
Q Consensus 1778 p~l~~~l~d~--~~~vR~sa~~ll~~ll 1803 (2629)
|.+...+.+. ..+++..|..++..+.
T Consensus 448 ~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 448 EKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6776666654 5677777777777664
No 77
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.67 E-value=1.2e-07 Score=114.82 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=170.6
Q ss_pred hhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccch-----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC--cc
Q 000049 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--IS 1372 (2629)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~-----~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~ 1372 (2629)
.-++.+.+.|.++++++|..++.++..++....+.. ...++.+++.|... +...|..|+.+|..++.+.. ..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 346777888888899999999999976665422111 23566777766554 47899999999999986422 12
Q ss_pred hhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
.+...+.++.|.+.+.+. ++..|..|+.+++.++..........+. ..+|.++..+.++++.||..+..++..+...-
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 222346788999999886 7999999999999997643321112222 58999999999999999999999999887543
Q ss_pred cHHh---H-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000049 1452 SAQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2629)
Q Consensus 1452 ~~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2629)
.... + ...+|.+++.+.+++..++..++.+|+.++...+....... .++++.+..++.+.+++||..|+++|.++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2221 1 46789999999999999999999999999976665433222 46889999999999999999999999988
Q ss_pred hh
Q 000049 1527 GS 1528 (2629)
Q Consensus 1527 ~~ 1528 (2629)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 78
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.66 E-value=2.5e-06 Score=119.95 Aligned_cols=770 Identities=12% Similarity=0.068 Sum_probs=376.2
Q ss_pred cCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhcc----CChhhhHHHHHHHH--HH
Q 000049 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED----KAWRTKQSSVQLLG--AM 1485 (2629)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~----~~w~~r~~a~~~L~--~l 1485 (2629)
+.+.+.-..++..++......-+.||..|..++..++..+. .....++|.+++.|+. .+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~-gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLV-GSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBT-THHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 34666667888888888888899999999999999998774 3457788888887754 46677788888764 33
Q ss_pred HhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhH-----HhHHHHHHhccCCCChhHHHHHHHH
Q 000049 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2629)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~lvp~Ll~~l~d~~~~~r~al~~L 1560 (2629)
....-. --.+++.+++.++++....+|.|+..+..+...+...+..|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~~-d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLMT-DYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGGG-CHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHhc-ChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 332221 1234678888888888777889988888777777665543311 1111 12222221111111110
Q ss_pred Hhc--cccccCChhhhhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000049 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2629)
Q Consensus 1561 ~~~--~~~~~~~~~~l~~i~p~L~~~L-~d~~--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V 1635 (2629)
-.. .-... -...+..+...+.... ++.. |+....++..+-++..... .|+-+.++..+.+.+.++.|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d-----~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE-----SKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS-----CCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0001112222222322 2235 7777766666544443211 3445677777777777777888
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHH
Q 000049 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2629)
Q Consensus 1636 R~~A~~aL~~l~~~~g~~~~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~ 1715 (2629)
|..|..++..+....... - ....+ .. + ..+. ...|.-++...++++...+.
T Consensus 353 R~~a~~~l~~il~~~k~~--------~---~~~~d-~~-~------------~~~~----~~~p~~~~l~~~~~~~~~~~ 403 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISL--------S---DYEYD-IT-R------------AYKN----EFNPSFVEILDTSTTSFPKT 403 (997)
T ss_dssp HHHHHHHHTHHHHHHHHH--------H---HHTTC-GG-G------------GSSS----SCCCTTEEEEESCSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhh--------h---cCCCc-HH-H------------hhcc----ccCCCCceecCCCCccHHHH
Confidence 888877777666543210 0 00000 00 0 0000 00000000000001111111
Q ss_pred HHHHHHH------hh--h-hh-----ccchHhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHh
Q 000049 1716 YLTLFKY------LP--R-SL-----GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2629)
Q Consensus 1716 a~~~l~~------L~--~-~~-----g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~ 1781 (2629)
....+.. +. . .. |..+.-|-+.- ..+ +-+ +.-..+.+.++ +...++-++.+...+.
T Consensus 404 ~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~-----~~l-~~~-~~e~~i~~~f~---~~~~~~~~~~l~~~l~ 473 (997)
T 1vsy_5 404 FTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKA-----LKL-NLR-ENELEVLKTAG---HLLTREFLRDVTMNLV 473 (997)
T ss_dssp HHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTC-----CCC-CCC-HHHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCC-----CCC-CCC-HHHHHHHHHHH---hhcCHHHHHHHHHHHH
Confidence 1111000 00 0 00 11111110100 111 111 11111222211 1111222222222222
Q ss_pred hccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR 1861 (2629)
+. .+.+.+.+..-+.++..+..-+. ...|...++.+.+.+-....|.+..-.
T Consensus 474 qe-~~~~~~F~~~~v~l~k~lf~l~~---------------------------rn~~~~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 474 QD-NETRGVFSSGNVSFFSLVILLIS---------------------------SGFCELNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp HT-TTTTCCCCHHHHHHHHHHHHHHT---------------------------TTTCCCCGGGHHHHHHHTCCSSCHHHH
T ss_pred hh-ccccCccccchHHHHHHHHHHHh---------------------------cccchhhHHHHHHHHHHHhccccHHHH
Confidence 11 11111111222222222221000 111222223333333233455666678
Q ss_pred HHHHHHHHHHHhcCh----hhHhhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh---c-
Q 000049 1862 QAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG---L- 1932 (2629)
Q Consensus 1862 ~aA~~~l~~l~~~~~----~~l~~~l~~Ll~~L~~~L~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~---L- 1932 (2629)
.+|++++..++.+.. ........-+.|.+-+.+. +-+++....-..|+.-+....++.-.+.++..+... +
T Consensus 526 r~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~ 605 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFD 605 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccC
Confidence 888999998887533 3344566677777878887 456655555555666666665655556666655321 1
Q ss_pred -CCCCh---hHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHH
Q 000049 1933 -KDPSA---SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008 (2629)
Q Consensus 1933 -~d~~~---~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~L 2008 (2629)
.+... ..|.... ..++...+-. ... ...++..+. +..+...||++....+..++...-...+.. +..+
T Consensus 606 ~~~~ssf~~~~rl~ll---~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~~~ 677 (997)
T 1vsy_5 606 RESDAATHQTSKIYML---RSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PTTL 677 (997)
T ss_dssp CCSSCCCCCCSSHHHH---HHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HHHH
T ss_pred CCCCcHHHHHHHHHHH---HHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HHHH
Confidence 11111 1233222 2222222211 111 233344434 788899999999998888876531111111 1223
Q ss_pred HHhccCc---------CchhHHHHHHHHHHhh---hccCcCcccchhhhcCCCchh----HHHHHHHHHHHhCCC----h
Q 000049 2009 LHALEDD---------QTSDTALDGLKQILSV---RTTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG----L 2068 (2629)
Q Consensus 2009 l~~L~~~---------~~~~~aL~~L~~il~~---~~~~ilp~Lip~L~~~~~~~~----~~~aL~~La~~~g~~----l 2068 (2629)
++.-... .........+..++.. -...+- ...|. ...... ....+..|...++.. +
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 678 LEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 3221111 0011222223222210 000000 00000 000111 123444555555554 7
Q ss_pred hhhHhh-hHHHHHHhcCCCCH-HHHHH-HHHHHHHHHhhc-ccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHH-Hh
Q 000049 2069 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 2142 (2629)
Q Consensus 2069 ~~~l~~-il~~Ll~~L~~~~~-~vr~~-a~~al~~l~~~~-~~~~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~-~~ 2142 (2629)
.++++. ++|.++.....++. ++... +..++..+.... ..+.++.++..+....+ +.+| .|.+++..+..|. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 788887 88888887765554 44444 444555543222 34557777777766665 5789 9999999887764 33
Q ss_pred chhhhhhhHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CcccccchHHHHHHHHhhhhhhhhhhhcCCcccccC
Q 000049 2143 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2629)
Q Consensus 2143 ~~~~~~~~~~~il~~Ll~ll~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2629)
.-.--......++..++.++.|+. .+||+.|..+|+.++.+. +......++..++.....
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~------------------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV------------------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT------------------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------------------
Confidence 321112233577888888999999 999999999999998775 422222222221111000
Q ss_pred CCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhh--hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000049 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSL--KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2629)
Q Consensus 2221 ~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l--~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~ 2298 (2629)
.+.... ++- .. ..+...|..|..+|+.++...| -.+ .++++.++..|.+...+ +..++.++=.+|++
T Consensus 895 ---~~~~~~-~~~---~~-~~~~~~rH~aVLgL~AlV~a~P-y~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlse 963 (997)
T 1vsy_5 895 ---NKYTSK-ERQ---KL-SKTDIKIHGNVLGLGAIISAFP-YVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISE 963 (997)
T ss_dssp ---TSSCHH-HHH---HH-HHHCHHHHHHHHHHHHHHTTCS-CCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHH
T ss_pred ---cccccc-ccc---cc-chHHHHHHHHHHHHHHHHhhCC-CCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence 000100 111 10 1112567789999999998887 444 67888887777666666 45588888888888
Q ss_pred HHHh
Q 000049 2299 IIRK 2302 (2629)
Q Consensus 2299 L~~~ 2302 (2629)
+-+.
T Consensus 964 FkrT 967 (997)
T 1vsy_5 964 FKKV 967 (997)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 79
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.65 E-value=1.5e-05 Score=111.96 Aligned_cols=423 Identities=15% Similarity=0.087 Sum_probs=239.5
Q ss_pred hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH----hhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhch
Q 000049 2069 NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT----LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2629)
Q Consensus 2069 ~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~----~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~ 2144 (2629)
..++.+++..+.+.-.+ +..-+..-...+..++ .++++..++.+.+.+-..+.+++.....+|++.++.+....+
T Consensus 462 ~~~~~~l~~~l~qe~~~-~~~F~~~~v~l~k~lf~l~~rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK 540 (997)
T 1vsy_5 462 REFLRDVTMNLVQDNET-RGVFSSGNVSFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSK 540 (997)
T ss_dssp HHHHHHHHHHHHHTTTT-TCCCCHHHHHHHHHHHHHHTTTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cCccccchHHHHHHHHHHHhcccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccC
Confidence 45667776666543211 1111222222333333 355666677788888887888888889999999999876654
Q ss_pred h----hhhhhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhh---h-hhhhhcCCc
Q 000049 2145 L----YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD---K-ERRKKKGGP 2215 (2629)
Q Consensus 2145 ~----~~~~~~~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~---~-~~~~~~~~~ 2215 (2629)
. .......-+.+.|-..++ +-.++.......++..+....+....+.+++ .+..... . .........
T Consensus 541 ~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e----~l~~~~~~l~~~~~ssf~~~~ 616 (997)
T 1vsy_5 541 FMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFC----HFINADGMFDRESDAATHQTS 616 (997)
T ss_dssp SCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHH----HHTCCCCCCCCCSSCCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHH----HHHHhhcccCCCCCcHHHHHH
Confidence 2 222333345555556676 5677777766666666666555443333333 2211110 0 000000000
Q ss_pred --cc------ccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChh-------------------hhhh-
Q 000049 2216 --IL------IPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-------------------SLKE- 2267 (2629)
Q Consensus 2216 --~~------l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~-------------------~l~p- 2267 (2629)
.. -.+...+. ...++..++ +.++...+|+..+..|+.+....-.. .+.+
T Consensus 617 rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 693 (997)
T 1vsy_5 617 KIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLK 693 (997)
T ss_dssp SHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSS
T ss_pred HHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccc
Confidence 00 01222232 455666666 77778999999999998888664100 0000
Q ss_pred ----chhhhhHHHHHHhc-------CCCCH-hHH---HHHHHHHHH-HHHhcCCC----ccCchHH-HHHHHHHHcCCCC
Q 000049 2268 ----FVIPITGPLIRIIG-------DRFPW-QVK---SAILSTLSI-IIRKGGIA----LKPFLPQ-LQTTFIKCLQDST 2326 (2629)
Q Consensus 2268 ----~v~~i~~~Li~~l~-------~~~~~-~vk---~~al~~L~~-L~~~~~~~----l~p~lp~-L~~~~~k~L~d~~ 2326 (2629)
.+...+.-+...+. ++.+. ..+ ...+.|+-. +...++.. +.||++. +.+.++....+.+
T Consensus 694 ~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d 773 (997)
T 1vsy_5 694 SVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKD 773 (997)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSH
T ss_pred cCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCc
Confidence 00000000111111 11110 011 111222222 11222222 3344444 4444444444443
Q ss_pred H-HHHHH-HHHHHHHHHhccCChhHHHHHHHHhhh-----cCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHh
Q 000049 2327 R-TVRSS-AALALGKLSALSTRVDPLVGDLLSSLQ-----VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2629)
Q Consensus 2327 ~-~vR~~-Aa~aLg~l~~~~~~~~~ll~~Ll~~l~-----~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2629)
. ++... |..++..+.. .+.....++.++..+. ++.. .|..++.-+..++-..--.++......|++.+..+
T Consensus 774 ~~eL~~~~a~~~l~~ls~-~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~ 851 (997)
T 1vsy_5 774 VCALASLDPVRLYAGLGY-MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSN 851 (997)
T ss_dssp HHHHTTCCSHHHHHHTSS-SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTT
T ss_pred HHHHHhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3 55555 5555555532 2334556666666653 2346 89888888776665433334455668999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhcCC------------CCchhhHhHHHHHHHHHhhCCcccc
Q 000049 2400 VYHDD-DHVRVSAASILGIMSQCM-EDGQLADLLQELLNLASS------------PSWAARHGSVLVFATFLRHNPSAIS 2465 (2629)
Q Consensus 2400 l~~~~-~~vr~~aa~~Lg~L~~~~-~~~~~~~~l~~ll~~~~~------------~~~~~~~~~~~~l~~~l~~~p~~~~ 2465 (2629)
+.|+. -+||.+||.+|+.+.+.. +......++..+..+... .+...+|+++++|++++...|-.+-
T Consensus 852 L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP 931 (997)
T 1vsy_5 852 LYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP 931 (997)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 99999 999999999999999887 634445566555444322 1114689999999999999996653
Q ss_pred CChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhh
Q 000049 2466 MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2629)
Q Consensus 2466 ~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2629)
-+++..+++..|..+..+.+ +++.++-.+++..-..
T Consensus 932 ~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 932 LPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKV 967 (997)
T ss_dssp CCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhc
Confidence 36788899999999988855 4999998888876544
No 80
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.64 E-value=1.1e-07 Score=116.39 Aligned_cols=252 Identities=15% Similarity=0.182 Sum_probs=169.8
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhH
Q 000049 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2629)
Q Consensus 1338 ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~ 1417 (2629)
+.+.++..|.+. .|.+|.||+.+|..+++..|...-. . ...++ ..|+..+..++ + +.|.+|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR--~-------~~~N~------DLAvRLLCVLA--L-DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDI--Q-------IRVDS------KLFSKIYEILV--T-DKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----C--C-------CCCCT------THHHHHHHHHH--H-BCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCce--e-------ccccH------HHHHHHHHHHH--h-cccccc
Confidence 666777777755 5999999999999999877643221 1 01111 33444343333 2 224444
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhh
Q 000049 1418 VIQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2629)
Q Consensus 1418 v~~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2629)
+ +|. ..-||++|+++++.+ ..+++. ..++-.++..+..+.|.+|++++..|..+ .+.+. .
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~-~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE-D 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC-C
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH-H
Confidence 3 343 457999999999999 888776 45666667777888999999999999877 22222 2
Q ss_pred ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCCh---hHHHHHHHHHhc-cccccCChh
Q 000049 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND---HTKYSLDILLQT-TFVNTVDAP 1572 (2629)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~---~~r~al~~L~~~-~~~~~~~~~ 1572 (2629)
++.+++.++.+|.|.+.+||..|+.+|..++ ....+..++..++..+.+-++ .+..-++.|..- .+.. ...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccc
Confidence 8999999999999999999999999999988 335688888888888765432 222223332220 1111 111
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHH-HHHHhcCCCHHHHHHHHHHHH
Q 000049 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1573 ~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~-L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..+.++|.|...+.+.-..||.++.+++..+. ...++.. +..++-++++++|..+.+.+.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS------------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11277888888888888999999888876654 1123333 344566888999988888775
No 81
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.60 E-value=0.0003 Score=103.39 Aligned_cols=141 Identities=13% Similarity=0.159 Sum_probs=88.7
Q ss_pred cCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHhccchh
Q 000049 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGERVL 1921 (2629)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~~L~~------------~~~~~R~~A~~~L~~lv~~~~~~~l 1921 (2629)
+..++.+|..++.+|+.+...... -.++++.+++.++..+.+ .+.++|..|+.++..++..++....
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345678999999999988764332 135778888877777655 2347899999999999998877654
Q ss_pred h---hHHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhch-hhHHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000049 1922 P---SIIPILSRGLKDP---SASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2629)
Q Consensus 1922 ~---~llp~L~~~L~d~---~~~vR~~a~~aL~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2629)
| .+...+...+... +..-+.....+++.+....++ +....|+..+++.+.....+++ .+. +......++.
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~ 697 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIA 697 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHH
Confidence 4 4444444444422 245566666777665333333 3445668888888888776543 333 3333344444
Q ss_pred HhCh
Q 000049 1995 SAGM 1998 (2629)
Q Consensus 1995 ~~g~ 1998 (2629)
.+|-
T Consensus 698 ~~G~ 701 (1204)
T 3a6p_A 698 YVGT 701 (1204)
T ss_dssp HHTS
T ss_pred HhCC
Confidence 4443
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.54 E-value=7.7e-06 Score=105.73 Aligned_cols=339 Identities=12% Similarity=0.068 Sum_probs=205.1
Q ss_pred HHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCC------------CHHHHHHHHHHHHHHh
Q 000049 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT------------HPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~------------~~~VR~aA~~aL~~l~ 1527 (2629)
+|.++..+.+.+.. .....|..+....|.-..-.=.+.+|.|+++|++. ++++|..|.+||.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34444555443333 13445555555444311111257788888888753 2699999999999999
Q ss_pred hhcCch--------------hHHhHHHHHHhccCCCC--hh-----HH--------HHHHHHHhccccccCChh-hhhhH
Q 000049 1528 SVIKNP--------------EIASLVPTLLMGLTDPN--DH-----TK--------YSLDILLQTTFVNTVDAP-SLALL 1577 (2629)
Q Consensus 1528 ~~~~~~--------------~i~~lvp~Ll~~l~d~~--~~-----~r--------~al~~L~~~~~~~~~~~~-~l~~i 1577 (2629)
..-++. .+....+.+++.+..+. +. ++ .|+.+|.+..+....... .-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 765431 11222345555554431 00 21 455555542221110000 01234
Q ss_pred HHHHHHhhc-----------CCCHHHHHHHHHHHHHHhhhcCCCCcccch---HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1578 VPIVHRGLR-----------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1578 ~p~L~~~L~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~---l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
++.|.+.+. ..+..++..|+.++.+++.. +. ..... ....+|.|..+|.+++++++..|+.+|
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~--~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG--DV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT--CH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC--Cc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555555552 12467899999999999863 21 11111 245689999999999999999999999
Q ss_pred HHHHhhhCCC---C--chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhh-C--hhHH--HhHhHHHHHhhcCCCh---
Q 000049 1644 GSLIRGMGEE---N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-G--TVYF--EHILPDIIRNCSHQRA--- 1710 (2629)
Q Consensus 1644 ~~l~~~~g~~---~--~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~-g--~~~l--~~llp~l~~~l~~~~~--- 1710 (2629)
+.++..-+++ . -...+|.|++.|....+...+..++.++..+.... + .... ...+|.+.+.+.+.+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 9997531111 1 13568888887655444556667777777776522 1 1122 4578888888876544
Q ss_pred -hhHHHHHHHHHHhhhh--hccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh--ch-hh-hHHHHHh
Q 000049 1711 -SVRDGYLTLFKYLPRS--LGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT--TS-LP-LLLPAVE 1781 (2629)
Q Consensus 1711 -~vR~~a~~~l~~L~~~--~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~~~--~~-i~-~llp~l~ 1781 (2629)
.+++.++.++..++.. -+......+ ...+|.+...|.+.+..++..|..++..+...-.. .. ++ -.+|.|.
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 4899999999988863 122222222 24789999999999999999999999887631111 11 12 2688888
Q ss_pred hccCCCchHHHHHHHHHHHHHHH
Q 000049 1782 DGIFNDNWRIRQSSVELLGDLLF 1804 (2629)
Q Consensus 1782 ~~l~d~~~~vR~sa~~ll~~ll~ 1804 (2629)
+.+.+.+.+++..+...+..++.
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHc
Confidence 98988899999999999988864
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-06 Score=107.76 Aligned_cols=195 Identities=14% Similarity=0.181 Sum_probs=143.0
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHH
Q 000049 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2629)
Q Consensus 1780 l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~ 1859 (2629)
+.+.+.+++|+.|..+++-+..++....... .+++. ... +......+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~~-----~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQI-----YWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CC-----TTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HHH-----HHHHHHHHHHHhccchHH
Confidence 5678899999999999998888775421110 00000 000 111222333456899999
Q ss_pred HHHHHHHHHHHHHhcCh------hhHhhhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000049 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2629)
Q Consensus 1860 VR~aA~~~l~~l~~~~~------~~l~~~l~~Ll~~L~~~-L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2629)
|...+++++..++...+ ..+..++..+++.++.. +.+....+|..+..++..++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888865 7899999999999999888865443 244567777888
Q ss_pred CCCChhHHHHHHHHHHHHHHhhchhh--HHHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000049 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2629)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2629)
...+|.+|.+++.+|..++..+|... ..+.++.+++.+..++.|.++.||.+|..+++.++..+|..
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998877643 35567788888899999999999999999999999998863
No 84
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.52 E-value=6e-06 Score=106.74 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=197.7
Q ss_pred hcHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHHHHhccCchhHHH-----------HHHHHHHHHcCCCC-
Q 000049 1377 YGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-----------QMLPLLLVAFSDQV- 1433 (2629)
Q Consensus 1377 ~~i~~~L~~~l~~~~-----------~~~~R~~Al~al~~La~~~~~~~~~~v~-----------~ilp~ll~~l~D~~- 1433 (2629)
.+.+|.|.+++.... ++..|..|..++..++.+-++....... ...+.+++++..+.
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 366777777776432 3788999999999999877654332111 11233444443221
Q ss_pred -HH-----HHH-------HHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhcc-----------CChhhhHHHHHHHHHH
Q 000049 1434 -VA-----VRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLED-----------KAWRTKQSSVQLLGAM 1485 (2629)
Q Consensus 1434 -~~-----VR~-------aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~-----------~~w~~r~~a~~~L~~l 1485 (2629)
.. ||+ .|..++..+... ... .+ ...+|.|+..|.. .+...+..++.+|..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 554 555566555322 111 11 2456666666631 2345688899999999
Q ss_pred HhhCchh--hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhc
Q 000049 1486 AYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2629)
Q Consensus 1486 a~~~p~~--l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~ 1563 (2629)
+...+.. ........+|.|+.+|.+.+++|+..|+++|..++.. .++.. +.++-
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-----
Confidence 9865432 1112456799999999999999999999999999742 11111 10000
Q ss_pred cccccCChhhhhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCCcccch--HhhhHHHHHHHhcCCCH----HHH
Q 000049 1564 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 1636 (2629)
Q Consensus 1564 ~~~~~~~~~~l~~i~p~L~~~-L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~----~VR 1636 (2629)
-...+|.|.+. +...+..+++.+..++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344566788888888888876211100 111 24578888888886544 489
Q ss_pred HHHHHHHHHHHhh--hCCCC-----chhhHHHHHHHhccCCChHHHHHHHHHHHHHHHhhCh--hHH--HhHhHHHHHhh
Q 000049 1637 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNC 1705 (2629)
Q Consensus 1637 ~~A~~aL~~l~~~--~g~~~-----~~~ll~~Ll~~L~~~~~~~~R~~a~~~L~~i~~~~g~--~~l--~~llp~l~~~l 1705 (2629)
..|+.+|..++.. .+++. -...+|.|++.|.+.. ...+..++.+|+.++..... ..+ ...+|.+.+.+
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998852 12221 1356888988887654 45788888899888742111 122 45689999999
Q ss_pred cCCChhhHHHHHHHHHHhhhhhcc
Q 000049 1706 SHQRASVRDGYLTLFKYLPRSLGV 1729 (2629)
Q Consensus 1706 ~~~~~~vR~~a~~~l~~L~~~~g~ 1729 (2629)
.+.+..+|+.+..++..|+..-+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999999999876543
No 85
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.49 E-value=1e-06 Score=108.05 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=160.8
Q ss_pred hHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhcc-------chHHHHHHHHHHhhc-------CC--CHHHHHHHHHHHHH
Q 000049 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMK-------SD--KYGERRGAAFGLAG 1364 (2629)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~-------~~~~ll~~ll~~L~~-------~~--~~~~R~~Aa~~L~~ 1364 (2629)
+.+.|..-|-++.+++|..++-+|..+++..+. ...++.-.++..+.- ++ -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 889999999999999999999999999987642 122555566655542 12 14799999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000049 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2629)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2629)
+ ..++.+ ..++..+...+... .|.+|++++.++.++.+.+. . +..+++.++.+++|++.+||..|..++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DLL~----~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEFVE----D-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGGCC----C-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHHHH----H-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777766 25555555555555 79999999999999922222 2 678899999999999999999999888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhhcc-CChhhhHHH-HHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHH
Q 000049 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQSS-VQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2629)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w~~r~~a-~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2629)
.-++ .+..+..++..+++.|.+ ++-..-.++ +.+|..+....+. ....+.++|.|...+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 7776 455678888888888765 334444444 5577777765442 22346899999999999999999999999
Q ss_pred HHHHh
Q 000049 1523 LQQVG 1527 (2629)
Q Consensus 1523 L~~l~ 1527 (2629)
|..|.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 97775
No 86
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.47 E-value=1.3e-06 Score=102.34 Aligned_cols=192 Identities=16% Similarity=0.126 Sum_probs=142.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhh
Q 000049 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2629)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2629)
...|.+...+.++++.+|..|..++..+...-... .+ ...+|.+++.|.++++.++..++.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567777889999999999999999987533222 11 357899999999999999999999999999765544222
Q ss_pred h-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhh
Q 000049 1496 C-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1496 ~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2629)
. -.+.+|.++.+++++++.||..|+++|.+++..- +... +.+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 2 2468899999999999999999999999998531 1110 0000 1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCccc-chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~ 1648 (2629)
...+|.+.+.+.+.+.++|..++.++++++.. .+.... -.-...++.+..++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 23567777777777889999999999999863 111111 1123578899999999999999999999998864
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.47 E-value=7e-06 Score=96.43 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhcc---Cch
Q 000049 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFE 1415 (2629)
Q Consensus 1343 l~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l----~~~~~~~~R~~Al~al~~La~~~~~---~~~ 1415 (2629)
...|+. .+|..|..|...|...+...+...+ ..++.+.+++ .++ |..+-..++..+..+...+++ .+.
T Consensus 52 ~~~lfs-~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 52 MSQLFH-KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHTC-SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccch
Confidence 334443 4688888888887776654332222 2233333333 354 788888888888888776653 366
Q ss_pred hH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1416 PY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1416 ~~-v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
+| ...++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++||+|.+++..++.+....+-..
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~- 202 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP- 202 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-
Confidence 66 478999999999999999999999999888765443 4677888899999999999999999999876422222
Q ss_pred hhccchH---HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch
Q 000049 1495 QCLPKIV---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2629)
Q Consensus 1495 ~~L~~iv---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2629)
...+ |.+.+++.|++..||.+|..|+..+-...++.
T Consensus 203 ---~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 203 ---LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp ---GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ---cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 3356 88999999999999999999999888777743
No 88
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.46 E-value=1.6e-06 Score=101.37 Aligned_cols=186 Identities=19% Similarity=0.168 Sum_probs=140.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH-
Q 000049 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2629)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v- 1418 (2629)
.+..|.++++...|..|+.+|..++.+... ..+...+.++.|.+.+.+. ++..|..|+.+++.++.+.+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344444566788999999999998854321 2222346788899999887 799999999999998753322111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
...+|.++..+.++++.+|..+..++..+...-.... + ...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 1478999999999999999999999999875332221 1 45789999999999999999999999999987555432
Q ss_pred hh-ccchHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000049 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2629)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2629)
.. -.+.++.+.+++.+.+++||+.|+.+|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999999874
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.38 E-value=1.2e-05 Score=94.38 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=141.3
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCcc
Q 000049 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2629)
Q Consensus 1778 p~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~ 1857 (2629)
+.+...+++.+|+.|..+++.+...+...+ ..+...+ +-++.-+.....|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~l-----Dll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSNS-----DLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHTH-----HHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHHH-----HHHHHHHHHHHhCCC
Confidence 355667788999999999888877653210 1111111 112222222346889
Q ss_pred HHHHHHHHHHHHHHHhcChh---hHhhh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC
Q 000049 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2629)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~---~l~~~-l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2629)
..|-..+++.+..++....+ .+.++ ...++|.++..+.++...+|..+...+..+....++ ..+.+.+..+++
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999988764332 23333 578899999999999999999999998777765443 346677777899
Q ss_pred CCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000049 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2629)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll---~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2629)
+.++.+|.+++..++.++..+|... ...+ |.+.+++.|+|..||++|..++..++.+.|.....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999888652 2345 88889999999999999999999999999986544
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.1e-06 Score=102.54 Aligned_cols=187 Identities=18% Similarity=0.177 Sum_probs=137.5
Q ss_pred HHhhhccCChhhhHHHHHHHHHHHhhCchh-----hhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCc-----
Q 000049 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2629)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2629)
+-+.|.+++|..|..+++-|..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654432 2223556677788889999999999999999999876542
Q ss_pred ----hhHHhHHHHHHhc-cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1533 ----~~i~~lvp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+..++|.++.. +.++...++ .+++.+.. ++... .....+++.+..++...++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~--~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLD--TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTS--SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhc--CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346778888865 788887776 45555432 11111 12234677888899999999999999999998887
Q ss_pred cCCCC-cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000049 1607 VTEPK-DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2629)
Q Consensus 1607 ~~~~~-~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~ 1653 (2629)
++... ...+.++.+++.+..++.|+++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 65421 234567778888999999999999999999999999999864
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.34 E-value=0.00013 Score=76.78 Aligned_cols=215 Identities=20% Similarity=0.173 Sum_probs=163.0
Q ss_pred hhhHHHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhc
Q 000049 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2629)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2629)
+.+++.++..|.|+-+.||..+...+..+....++-...++..++-.+.+++....-..-+.+++.++... ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 56789999999999999999988888888777777777888888888888877777677888888888643 34443 5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000049 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2629)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2629)
++|.+.....-. ++..|..-..+++.++...|.. ...++.-+...+.+++..=|-++..-+..+..+ +...+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 777777776655 7889998889999998876643 345555666777888866666665544444322 2234567
Q ss_pred hHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000049 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2629)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2629)
.+|.++..|.+++--+|..+++.|+.+|...|+ +..++...++-++|++..|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 889999999999988999999999999987766 3445556667789999999999888888775
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.10 E-value=0.00027 Score=78.40 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=160.7
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh----hhchhhhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCcc
Q 000049 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2629)
Q Consensus 1737 ~ii~~ll~~L~d~~~~VR~~al~al~~iv~~~----~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k 1812 (2629)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.++...|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 46677788889999999999999999998873 344677899999999999999999999999999984321
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhccCccHHHHHHHHHHHHHHHhcChhhHhhhHHHHHHHHHH
Q 000049 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2629)
Q Consensus 1813 ~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~Ll~~L~~ 1892 (2629)
++++.+..+..++.....+.+...+..|.+.++.+-. ....+.++..+..
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHH
Confidence 1122333455555555567788899999999998821 2345677888888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHhHHHHHHHHH
Q 000049 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2629)
Q Consensus 1893 ~L~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2629)
.+.|.+..++.+|.+++.++....++. ++..++.-+...++.+|+.++.-+...+.+++..--.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 889999999999999999998877654 5666666677778888999999999988887654322333333344444444
Q ss_pred HHh-cCCcHHHHHHHHHHH
Q 000049 1972 TAL-CDSILEVRESAGLAF 1989 (2629)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al 1989 (2629)
... -...|.+|..|...-
T Consensus 238 ~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHH
Confidence 444 456788888775433
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.06 E-value=0.00011 Score=89.47 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhh
Q 000049 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2629)
Q Consensus 1394 ~~R~~Al~al~~La~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2629)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|..+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 5677788877777764331 11122 246888999 999999999999999999998653322 12 35789999999
Q ss_pred cc-CChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.+ .+..++..++.+|+.++.+.+....... .+.+|.|..+++++++.||..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 85 4678899999999999987665433222 36899999999999999999999999999865
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.04 E-value=0.00015 Score=91.05 Aligned_cols=256 Identities=11% Similarity=0.028 Sum_probs=168.8
Q ss_pred hhHHHHHHHHHHHhhCchhhhhh--ccchHHHHhhhhc-----------CCCHHHHHHHHHHHHHHhhhcCchhHHhHHH
Q 000049 1474 TKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVLT-----------DTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2629)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~--L~~ivp~L~~~L~-----------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2629)
....|+.+|+.++.. ++ .+.. =.+.++.|..++. ..++.+|..|+++|..++..-. ..
T Consensus 48 ~~~~A~~aL~nls~d-~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~--~~----- 118 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV--AN----- 118 (354)
T ss_dssp THHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH--HH-----
T ss_pred HHHHHHHHHHHHcCC-HH-HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH--HH-----
Confidence 344677888888865 22 1211 1356677777763 1247899999999999974311 10
Q ss_pred HHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccch--Hh
Q 000049 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IG 1618 (2629)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~ 1618 (2629)
+..+. ....++|.|.+.+.+.+.+++..++.++.+++.. .+. +.... -.
T Consensus 119 -------------k~~i~--------------~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~-~~k~~i~~~ 169 (354)
T 3nmw_A 119 -------------KATLC--------------SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADV-NSKKTLREV 169 (354)
T ss_dssp -------------HHHHH--------------HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCH-HHHHHHHHT
T ss_pred -------------HHHHH--------------HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCH-HHHHHHHHC
Confidence 00000 0123466777777777788888899999888753 111 11111 12
Q ss_pred hhHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhCC---CC--chhhHHHHHHHhccCCCh---HHHHHHHHHHHHHHHh-
Q 000049 1619 LLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA- 1688 (2629)
Q Consensus 1619 ~ll~~L~~~-L~d~~~~VR~~A~~aL~~l~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~R~~a~~~L~~i~~~- 1688 (2629)
..+|.|..+ +...++.+++.|+.++..++....+ .. ....+|.|.+.+.+..+. ..+..++.+|..+...
T Consensus 170 G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 467778886 4567889999999999999873211 11 356788898888765432 3566677777777642
Q ss_pred -hChh---HH--HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH--HhHHHHHHhhcCCCChhHHHHHHHH
Q 000049 1689 -LGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGA 1760 (2629)
Q Consensus 1689 -~g~~---~l--~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~a 1760 (2629)
.+.+ .+ ...+|.+++.+.+.+..+++.++.++..++..... ....+ ...+|++...+...++.+|+.|..+
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 1222 12 34689999999999999999999999999743222 22233 2478999999999999999999999
Q ss_pred HHHHHHHh
Q 000049 1761 GHVLVEHY 1768 (2629)
Q Consensus 1761 l~~iv~~~ 1768 (2629)
+..+...-
T Consensus 329 L~nL~~~~ 336 (354)
T 3nmw_A 329 LRNLMANR 336 (354)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 98887653
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.04 E-value=7.7e-05 Score=93.56 Aligned_cols=218 Identities=16% Similarity=0.105 Sum_probs=155.4
Q ss_pred cHHHHHHHHHhhhhhHhhhc---cc---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHH
Q 000049 1313 SEAVQRAVSSCLSPLMQSMQ---DE---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2629)
Q Consensus 1313 ~~~Vq~~~~~~L~~l~~~~~---~~---~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2629)
++++|..++.+|..+...-. .. ....++.|+..|. +++...+..|+.+|..++.+-. ...+...+.++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46799999999988863321 11 1345777887775 4557899999999999986411 1233334678888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHh--hcHHh
Q 000049 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQ--LSAQG 1455 (2629)
Q Consensus 1384 ~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~--l~~~~ 1455 (2629)
.+.+....+...++.|+.++..|+....+.-...+ ...+|.|...+.++++ .+++.+..++..+... -.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333678888888899888863322112222 2588999999876544 4888888888887652 12222
Q ss_pred ---H--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
+ ...+|.+++.|.+.+..++..|+.+|..++...+++...-. ...+|.|.+++.+.++++|+.|+.+|..++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 24689999999999999999999999999976555432222 46789999999999999999999999999976
Q ss_pred cC
Q 000049 1530 IK 1531 (2629)
Q Consensus 1530 ~~ 1531 (2629)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 33
No 96
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.98 E-value=6.9e-05 Score=91.37 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHH
Q 000049 1353 GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2629)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~-~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~ 1428 (2629)
..|..|...|..++..... ..+...+.++.+.. .+.+. ++..|..|+.+++.++..-+. ....+. ..+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 4677777778777764421 11222355677777 88776 799999999999999865332 223333 588999998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc-cchHH
Q 000049 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2629)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp 1502 (2629)
+. +++..+|..|..++..+....++. .+ ...+|.|+..|.+++..++..++.+|+.++.+.++...... .+++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 568999999999999887654332 22 35789999999999999999999999999987665432221 47899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.|+.+|.++++.||+.|+.+|++++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.86 E-value=0.0054 Score=68.34 Aligned_cols=218 Identities=11% Similarity=0.079 Sum_probs=154.7
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2629)
..+..+...+.++ |...+..++++++.+....++.+. ..+..++|.++..+.+++..|--.|..+++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 3556677777666 899999999999999998764343 45678999999999999999999999999999885 5677
Q ss_pred hHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchh
Q 000049 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2629)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2629)
++..+...+.+-+.+++--.+..+.+.+|.+ .+ ....+.++..+..++...+++|+.+|..++..++..-++++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8888888888888888777777888888876 11 12236677778888888899999999999999987655443
Q ss_pred H-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcc
Q 000049 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2629)
Q Consensus 1535 i-~~lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2629)
+ ..++.- +...++..++.++..|.+.+..+.+. .-++.+
T Consensus 186 i~~~I~~e---------------------------------------I~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDE---------------------------------------IPSLLQNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTT---------------------------------------HHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHH---------------------------------------HHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 222222 22334445567777777777777654 222333
Q ss_pred cchHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000049 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2629)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~VR~~A~~a 1642 (2629)
.+-+-.+......+. -...|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 333444444444444 45667777776543
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.66 E-value=0.0016 Score=80.44 Aligned_cols=269 Identities=12% Similarity=0.109 Sum_probs=144.8
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 000049 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2629)
Q Consensus 1346 L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2629)
+..+++...|+.....+..+.+. ..+.+ -+...+.+-++++ |+..|-.|+.+++.+. .. ..+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~~---~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---DS---TMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---CT---TTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---CH---HHHHHHHHHH
Confidence 44567789999988888887765 33333 4677888888887 7899987777666653 22 3455678888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHh
Q 000049 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2629)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2629)
-+++.|.++.||.+|.-+...+... .++.++..++.+-+.+.+.+..+...|+.+|..+....+.. +..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a----~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA----VSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH----HHHHHHHHh
Confidence 9999999999999998887777644 45567888888888899999888888888888887654322 233444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcC-c-hh-HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHH
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIK-N-PE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~-~-~~-i~~lvp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2629)
+. .-.++..+ +.-+..+..... + +. -..+++.+...+.+.++.+- +|..++... .+ .....+...++.+
T Consensus 220 ~~-~l~~~~~q---~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAY---CMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHH---HHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHH---HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 31 11133333 333333333332 2 22 36788888888888777776 677776542 11 1222334445666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000049 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2629)
Q Consensus 1582 ~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2629)
...+.++++++|-.|...+..+... .|..+.. .-.-+..++.|++..++..|+..+
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6777778889999998888877763 3334333 334456677788877766665544
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.63 E-value=0.00026 Score=87.40 Aligned_cols=279 Identities=14% Similarity=0.120 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhchhhHHHh
Q 000049 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2629)
Q Consensus 1883 l~~Ll~~L~~~L~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2629)
...++..+++.+.+++...|....-.+..+... .+.++ -+...+.+-++++++-+|..+..+++.+.. .+.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-------STM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHH
Confidence 345667778889999999999988888776655 34444 566778888889999999999999887632 224
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCcCc--hhHHHHHHHHHHhhhccCcCccc
Q 000049 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2629)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~L 2040 (2629)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ...|+..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 567888899999999999999999888887754 344556677777777766542 24566666665532 22244556
Q ss_pred chhhhcCCCc-hh-HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Q 000049 2041 LPKLVHLPLS-AF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2629)
Q Consensus 2041 ip~L~~~~~~-~~-~~~aL~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll 2118 (2629)
++.+....+. .+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+..........+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 6666554331 22 222333222211111112235566677777788888887666665543322 11222223334444
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000049 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2629)
Q Consensus 2119 ~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL 2177 (2629)
..+.+.++.+|..|+..+..+....+.-+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 45567888999999999999887666554443 34456677899988876665543
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.34 E-value=5.6e-05 Score=80.61 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=72.2
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2629)
..++.+...|.+++|.+|..++..|+.+.. +. ++.|...++|+++.||..|+++|+.++. +
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----------~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----~---- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD----------EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD----E---- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS----------TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----H----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----------hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----H----
Confidence 345555666666666666666666554321 11 3666666777777777777777766542 1
Q ss_pred HHHHHHhccCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchH
Q 000049 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2629)
Q Consensus 1538 lvp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2629)
..++.|...+.|.++.+|..++.+++.+..
T Consensus 73 --------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------------ 102 (131)
T 1te4_A 73 --------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG------------ 102 (131)
T ss_dssp --------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------------
T ss_pred --------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------
Confidence 123444455556677888888888887642
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000049 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2629)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2629)
+..++.|...+.|+++.||..|..+|+.
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2357778888888889999998888764
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.23 E-value=0.59 Score=64.28 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=59.4
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchH-HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCch---
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--- 1533 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--- 1533 (2629)
.++| +++.|.+.+...|.+||.+|+.++......-.-.-.+++ +.+..++.|++..||.+|..+|++++..-+..
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788889999999999999998642221111123444 45667899999999999999999998653311
Q ss_pred hH--HhHHHHHHhcc
Q 000049 1534 EI--ASLVPTLLMGL 1546 (2629)
Q Consensus 1534 ~i--~~lvp~Ll~~l 1546 (2629)
++ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 11 34566665554
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.16 E-value=0.48 Score=62.01 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhcc-
Q 000049 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-RNSAKRREGALLAFECLCEKLGR- 1412 (2629)
Q Consensus 1335 ~~~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~-~~~~~~R~~Al~al~~La~~~~~- 1412 (2629)
..+.++.|.+.+.++.-.+.|+.|..+|..+.+........ .-++.+...+++ ..|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 46778888888888777789999999999998766543332 224444444433 23444444455544333221110
Q ss_pred ---------------CchhHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhhHHHHHhhhc
Q 000049 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2629)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2629)
.+...+ .+-++.++.++...+..+|..+...+..+...-+... + ..-+|.|++.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999887554422 2 246788999999
Q ss_pred cCChhhhHHHHHHHHHHHhhCchhh-hhhccchHHHHhhhhcCCCH----HHHHHHHHHHHHHhhhcC-c-hhH--HhHH
Q 000049 1469 DKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-N-PEI--ASLV 1539 (2629)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~-~~i--~~lv 1539 (2629)
++.-..|..++.+|..++.+.++.. .-.+.+.++.++.++..... .|..-|...|..+.+.-. | ..+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9888889999999999998776532 22356778888888766443 677778888888876521 1 122 2345
Q ss_pred HHHHhccC
Q 000049 1540 PTLLMGLT 1547 (2629)
Q Consensus 1540 p~Ll~~l~ 1547 (2629)
|.|...+.
T Consensus 257 ~~L~~LL~ 264 (651)
T 3grl_A 257 QRMKPWFE 264 (651)
T ss_dssp GGGGGGGC
T ss_pred HHHHHHhC
Confidence 55555554
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.05 E-value=8.9e-05 Score=86.94 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=110.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Q 000049 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2629)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp 1423 (2629)
..+...+++.+|..++..| ++. .+...++++ ++.+|..+... ++. +
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~ 101 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------E 101 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------G
T ss_pred HHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------H
Confidence 3444556678888877743 211 234445565 78888777653 221 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHH
Q 000049 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2629)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2629)
.+...++|+++.||.++...+ +.. .+...+.+++|.+|..+..-+ + + +.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~ 150 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------P-------P---GR 150 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------C-------G---GG
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------C-------H---HH
Confidence 345567888888888765532 211 123335677888887766521 1 1 12
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHH
Q 000049 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2629)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2629)
+..+++|+++.||.++...+ .. +.+...+.|++..+|. +...+ . .+.+.
T Consensus 151 l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~ 200 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL---------R-------GDDLL 200 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGG
T ss_pred HHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHH
Confidence 44567888888888887651 11 2344566788888773 33221 0 13445
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000049 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2629)
Q Consensus 1583 ~~L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2629)
..+.|.+|.||..+...++ .+.+..+ .|+++.||..+...||
T Consensus 201 ~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 201 ELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 5678888888888776532 1334444 8888888888876654
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.03 E-value=0.00065 Score=72.24 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=87.2
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2629)
.-.+.+...++++ ++.+|..|+.+++.+ +. + . ++.++..+.|+++.||..+..++..+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 3455677777776 788888887766543 22 1 1 477888899999999999988887663 24
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2629)
..+|.++..+.+++|.+|..++.+|+.+.. +..+|.|...++|+++.||..|..+|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888999999999999999998752 3467888889999999999999999865
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.91 E-value=0.00027 Score=82.83 Aligned_cols=185 Identities=16% Similarity=0.078 Sum_probs=122.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHHh
Q 000049 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2629)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2629)
.+++|+++.||..+...+. + ..+...+.|++..+|. +...+ . .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------~------~~l~~L~~D~~~~VR~~aA~~L---------~-------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------V------EALTPLIRDSDEVVRRAVAYRL---------P-------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------G------GGGGGGTTCSSHHHHHHHHTTS---------C-------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------H------HHHHHHccCcCHHHHHHHHHHC---------C-------HHHHHHH
Confidence 4579999999999988541 1 1355667899999984 33221 1 1345667
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000049 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2629)
Q Consensus 1585 L~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~Ll~ 1664 (2629)
++|.++.||..+...+ .. +.+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887632 11 1234557899999999998732 211 223
Q ss_pred HhccCCChHHHHHHHHHHHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHHHHHh
Q 000049 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2629)
Q Consensus 1665 ~L~~~~~~~~R~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~~ll~ 1744 (2629)
.+.++.+..+|..++.. ++.. .+...+.+++|.||..+...+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 34456667788877664 2322 233566889999999888642 11 34566
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhhchhhhHHHHHhhccCCCchHHHHHHHHHHH
Q 000049 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2629)
Q Consensus 1745 ~L~d~~~~VR~~al~al~~iv~~~~~~~i~~llp~l~~~l~d~~~~vR~sa~~ll~ 1800 (2629)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 688999999998877643 2344445 8999999998765443
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.87 E-value=0.5 Score=58.94 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=181.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.|+...+.-|+..|....+..+ .....-+..++.+..|. +..+|..|+..|..+++. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4678899999999999987765 22233445567777775 788999999998887753 57999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCc-ChHHHHHHHHHHHH
Q 000049 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKD 2398 (2629)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~ 2398 (2629)
+.|+..+..-+...-.+|-.+...+| ...+..++..+..+++.+|+.++..|..-+...+... ....-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888888899888877654 3456666777666789999999999998888776654 45555667788888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhcCChhH---HHHHHHHHHhh---cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000049 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.+.|-...--.....+|+.+-..-.... +.+++.+.... ....+.......+.++...+-.....+-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 8888766655666677766544333222 33333332211 12223222223444555444333322222223222
Q ss_pred HHHHHHhhhcCCC-----hhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCH-----------------
Q 000049 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS----------------- 2530 (2629)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----------------- 2530 (2629)
+...+...+..=. +..+-.-..+++.+..+++... .....+..+...|..-+.-...
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333332211 1245556667777666665221 0112233333344433321111
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000049 2531 EVRRRALSALKSVAKANPSAI 2551 (2629)
Q Consensus 2531 ~vr~~al~~l~~~a~~~~~~v 2551 (2629)
.--...++++.+++++.|+..
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 122678899999999999765
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.84 E-value=0.15 Score=66.68 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcC--CHHHHHHHHHHHHHHHhhcChhhhhhch-----------hhhhHHHHHHhcCCCCHhHHHHHHHHH
Q 000049 2230 LLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFV-----------IPITGPLIRIIGDRFPWQVKSAILSTL 2296 (2629)
Q Consensus 2230 ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v-----------~~i~~~Li~~l~~~~~~~vk~~al~~L 2296 (2629)
+++.+++-+... ...++..|+.+++++++..+ ..+.++ +.++..|+..+.++...++|.+++.++
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566656554 67889999999999986543 223222 223333445566667789999999999
Q ss_pred HHHHH
Q 000049 2297 SIIIR 2301 (2629)
Q Consensus 2297 ~~L~~ 2301 (2629)
..++.
T Consensus 390 ~ay~~ 394 (651)
T 3grl_A 390 QCFLY 394 (651)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87765
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.78 E-value=0.013 Score=66.30 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=125.5
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCh
Q 000049 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2629)
Q Consensus 2345 ~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2629)
+....|+..|++.+..-+.+.+.- .++-..+.... ..+.++.+...+.+++.+.+|-.|+..||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~~-~~~a~~~~~~~-------~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKEE-EQRALTDYKSN-------DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CHH-HHHHHHHHHHS-------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHhC-------CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 456778888877765433222221 12222333321 2567778888888899999999999999988 3 32
Q ss_pred hHHHHHHHHHHh-hcCCCCchhhHhHHHHHHHHHh-hCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhh
Q 000049 2425 GQLADLLQELLN-LASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2629)
Q Consensus 2425 ~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~l~-~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2629)
.++-++++ . ...++.|.++.....++..++. ..|+. .++.+..-+.++++.+|..|..+..-....
T Consensus 102 ~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 102 KEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp HHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred HHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 33333333 4 2457789888877778888875 66653 345566778899999999998886432111
Q ss_pred hhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHHH
Q 000049 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2629)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l~~ 2557 (2629)
|....+...+++.+-....|++.=||+.....|+-+++.+|+.|+.++..
T Consensus 170 -----~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 170 -----PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp -----TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -----chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 21223456677777777889999999999999999999999999887653
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.55 E-value=0.014 Score=67.94 Aligned_cols=191 Identities=16% Similarity=0.096 Sum_probs=113.9
Q ss_pred hhHHHHHhhhccCCh--hhhHHHHHHHHHHHhhCchhhh-hhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc-Cch
Q 000049 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP 1533 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~~~ 1533 (2629)
..+|.+++.|.+++. ..+..++..+..+++..+..-. -.-.+.+|.|+++|...++++|..|+++|..++..- .+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 457888888888777 7777788888888876543221 112456799999999999999999999999998631 122
Q ss_pred -hH--HhHHHHHHhccC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHHhh-------c---------CCCHHH
Q 000049 1534 -EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 1592 (2629)
Q Consensus 1534 -~i--~~lvp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~L-------~---------d~~~~v 1592 (2629)
.+ ..-+|.|++.+. .++..++ .+..+|..-...+.........-+|.|...+ . ..+.++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457888888886 4566665 3433332211111111112223345544422 1 125689
Q ss_pred HHHHHHHHHHHhhhcCC-CCcccchHhhhHHHHHHHhc----C--CCHHHHHHHHHHHHHHHhh
Q 000049 1593 KKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV----D--PIPEVRSVAARAIGSLIRG 1649 (2629)
Q Consensus 1593 r~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~----d--~~~~VR~~A~~aL~~l~~~ 1649 (2629)
+..+..++.+++..-.+ .+.+.. .+.+++.|..+++ + .+...++-+..+|..+...
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999763101 011211 1234444444433 2 3456777777777766543
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.39 E-value=0.03 Score=63.52 Aligned_cols=143 Identities=18% Similarity=0.165 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchh
Q 000049 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2629)
Q Consensus 1337 ~ll~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~ 1416 (2629)
+.+..+...|.+++.+.+|..|+..|+.+ . .. ..+++.+...+.++++|.+|+.+..+|+.++...+.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~--~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KD--KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TS--HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----Cc--HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 44456777788888789999999977766 2 22 267888888444344899999999999998864332
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhh
Q 000049 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2629)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2629)
...++.+.....|++..||..|.+..+....... ......++|.+-....++++.+|++....|..++...|+-+
T Consensus 138 --e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 138 --KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 1256778888999999999999888754222111 11235677777777788999999999999999988776643
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.42 E-value=3.1 Score=52.04 Aligned_cols=269 Identities=16% Similarity=0.154 Sum_probs=149.1
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccchHH
Q 000049 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2629)
Q Consensus 2115 ~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l~~ 2194 (2629)
..++...+. +...++.|+..+..+++..+ ..-...+..++.+++|.|..||..|...|..+++. +.++.+..
T Consensus 32 ~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaD 103 (507)
T 3u0r_A 32 QVILDGVKG-GTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVAD 103 (507)
T ss_dssp HHHHHGGGS-CHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHH
Confidence 334444443 47888888888888887543 34456777888888888888888888888887765 55666666
Q ss_pred HHHHHHhhhhhhhhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhhh-h
Q 000049 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI-T 2273 (2629)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i-~ 2273 (2629)
.+.|.+......+...-... .+.-+ .......+..+...+.++++.+|+.++..|..-+...+.+.+.+-+..+ +
T Consensus 104 vL~QlLqtdd~~E~~~V~~s--L~sll--k~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 104 ILTQLLQTDDSAEFNLVNNA--LLSIF--KMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HHHHHTTCCCHHHHHHHHHH--HHHHH--HHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHH--HHHHH--hcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 66666654322111100000 00000 0112234455566666788899999888888877777755555444333 3
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC--CccCchHHHHHHHHHH--c----CCCCHHHHHHHHHHHHHHHhc--
Q 000049 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI--ALKPFLPQLQTTFIKC--L----QDSTRTVRSSAALALGKLSAL-- 2343 (2629)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~--~l~p~lp~L~~~~~k~--L----~d~~~~vR~~Aa~aLg~l~~~-- 2343 (2629)
..+-.++.|- ..+--...+. ++..+.. .. +...+|...+..- | ...+.+.-.....|+-.-.-+
T Consensus 180 ~~ikK~L~DV-T~~EF~L~m~----lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 180 TESKKVLEDV-TGEEFVLFMK----ILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHTTSC-CHHHHHHHHH----HHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHhccc-cHHHHHHHHH----HHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 3344555443 2222122222 2222211 11 1123444444432 1 112444444555555543221
Q ss_pred -cCChhHHHHHHHHh----hhcC-C----HHHHHHHHHHHHHHHhhcC-CCcChHHHHHHHHHHHHhhc
Q 000049 2344 -STRVDPLVGDLLSS----LQVS-D----AGIREAILTALKGVLKHAG-KSVSSAVKIRVYSVLKDLVY 2401 (2629)
Q Consensus 2344 -~~~~~~ll~~Ll~~----l~~~-d----~~vr~~~l~AL~~vi~~~g-~~~~~~~~~~i~~~L~~~l~ 2401 (2629)
+.+-.+++..++.. +..- + .+.|-..++++.++...+| ..-.....+.|++.|...+=
T Consensus 254 ~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp TTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred cCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 22334555555444 3321 1 2378899999999999888 44446788888888876554
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.96 E-value=0.3 Score=56.67 Aligned_cols=175 Identities=10% Similarity=0.020 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHH
Q 000049 1353 GERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2629)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~ 1428 (2629)
..+..|+..|..++.+.. ...+...+.++.|.+.+.+. +...|+.|..++..++..-.+ -...+. ..+|.++..
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~-nk~~I~~~GaI~~Lv~l 102 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDND-NKLEVAELNGVPRLLQV 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCCHHHHHHH
Confidence 344444455554443221 11222235678888888876 789999999999999853221 112222 478889998
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHHHHHhhhc-------c---------CChhhhHHHHHHHHHHHhhC
Q 000049 1429 FS-DQVVAVREAAECAARAMMSQLS--AQGVKLVLPSLLKGLE-------D---------KAWRTKQSSVQLLGAMAYCA 1489 (2629)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp~Ll~~L~-------~---------~~w~~r~~a~~~L~~la~~~ 1489 (2629)
+. .++..+++.+..++..+...-. ..-++.-+|.|.+.+. + .+..++..+..+|..++...
T Consensus 103 L~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 103 LKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC
T ss_pred HccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC
Confidence 87 4688999999888888764321 1223445677765432 0 13367888889999988644
Q ss_pred ch---hhhhhccchHHHHhhhhcC------CCHHHHHHHHHHHHHHhhhc
Q 000049 1490 PQ---QLSQCLPKIVPKLTEVLTD------THPKVQSAGQTALQQVGSVI 1530 (2629)
Q Consensus 1490 p~---~l~~~L~~ivp~L~~~L~D------~~~~VR~aA~~aL~~l~~~~ 1530 (2629)
++ .+.. -+.+++.|+.+++. .+.+.++.|+.+|.++...+
T Consensus 183 ~~~R~~~r~-~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 183 ADGRKAMRR-CDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHT-STTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHH-CCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 33 2322 35677888777653 35578889999999887543
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.76 E-value=8.5 Score=47.65 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=79.8
Q ss_pred HHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhc--CC----------------CCc---------hhhHHHHHHHHhh
Q 000049 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP----------------ANT---------TVVVDILASVVSA 2524 (2629)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~----------------~~~---------~~l~~~l~~l~~~ 2524 (2629)
.+-..+.....+++..+|-+++..+-.++..+.+. ++ .+. ..-..++..++..
T Consensus 154 ~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~ 233 (386)
T 3o2t_A 154 AMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKF 233 (386)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34455556667778888888888888777655322 11 011 1122355666666
Q ss_pred cCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHhh--------hcCCcchhhhhHHHHHHHHhccccCchhH
Q 000049 2525 LHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAEC--------LKDGSTPVRLAAERCAVHAFQLTRGSEYI 2594 (2629)
Q Consensus 2525 l~~--~~~~vr~~al~~l~~~a~~~~~~v~~~l~~l~p~l~~~--------~~~~~~~vk~aae~a~~~l~~~~~~~~~~ 2594 (2629)
+.+ .++-.=.+++.+|..+++..|... ..++|.+..- .+-..-.|+...-..|+++++-+...+..
T Consensus 234 l~~~~iss~~l~a~lnsLa~Iak~RP~~~----~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~ 309 (386)
T 3o2t_A 234 MVHPAISSINLTTALGSLANIARQRPMFM----SEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQ 309 (386)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGH
T ss_pred HcccccccHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhH
Confidence 553 233344678899999999988753 3333333221 01112236777778999999988877777
Q ss_pred HHHHHHhhhhhh
Q 000049 2595 QGAQKFITGLDA 2606 (2629)
Q Consensus 2595 ~~~~~~l~~~~~ 2606 (2629)
..+..+|+.+-+
T Consensus 310 ~~I~~~L~~Lg~ 321 (386)
T 3o2t_A 310 AQITTLLVDLGT 321 (386)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcc
Confidence 788888755543
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.92 E-value=16 Score=42.71 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCChh
Q 000049 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2629)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d~d~~ 2168 (2629)
+.+-....-...++..-+...++.+++.++....+.+..+|...+..+...|... ..+.+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 3444444444454444345668899999999888888999999999988888542 356778899999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcccccchHHHHHHHHhhhhhh--hhhhhcCCcccccCCCCcccchhhHHHHHHHHhcCCHHHH
Q 000049 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDK--ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246 (2629)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~--~~~~~~~~~~~l~g~~l~k~l~~ilp~ll~~L~~~~~~~r 2246 (2629)
|.+.+..+.+.+.+..- +......... ....| ..+..+-..++..+.+++..+|
T Consensus 106 V~K~~I~~~~~iY~~~l-----------~~i~~~~~~~~~~~~~W-------------~~m~~lK~~Il~~~~s~n~gvk 161 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNGL-----------QYLCSLMEPGDSAEQAW-------------NILSLIKAQILDMIDNENDGIR 161 (257)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHTTSSSCCHHHHHHH-------------HHHHHHHHHHHHGGGSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHhcCCCCcchHHHHH-------------HHHHHHHHHHHHHHccCCcchH
Confidence 99999988888754321 1111110000 00000 0111222334455667788899
Q ss_pred HHHHHHHHHHHhh
Q 000049 2247 EQAALGLGELIEV 2259 (2629)
Q Consensus 2247 ~~aa~~L~~l~~~ 2259 (2629)
..+.+.+..++..
T Consensus 162 l~~iKF~e~vIl~ 174 (257)
T 3gs3_A 162 TNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998888843
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.35 E-value=3.9 Score=58.87 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHH
Q 000049 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2629)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L 1504 (2629)
.++.+|+.+..+++.++... +.+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 45778888888887776632 222345566666666777777778888999998864 3445555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHhhhcCchhHHhHHHHHHhccCCC--ChhHH-HHHHHHHhccccccCChhhh
Q 000049 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2629)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~~~~~~l 1574 (2629)
.+++. +...+||.+|++||..++... | +.+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55553 225689999999999998532 2 22334455555333 34567 566665431 1223
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2629)
Q Consensus 1575 ~~i~p~L~~~L~d~~~~vr~~a~~~l~~l~~~ 1606 (2629)
..+..+....-.|++..|+......+.+++..
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 22333333333557778888777777777653
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=90.16 E-value=13 Score=41.36 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHH
Q 000049 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2629)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~l~~~~g~~~---~~~ll~~Ll 1663 (2629)
...-....+....+... ..-.+.||+.+++|.+..++-.. ...+|..|+..++.++...|..+ .+.++..+.
T Consensus 60 l~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 34334444555555542 22357899999999999987532 22799999999999999998753 244555555
Q ss_pred HHhccC-CChHHHHHHHHHHHHHHHhhChhHHHhH-hHHHH
Q 000049 1664 DALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHI-LPDII 1702 (2629)
Q Consensus 1664 ~~L~~~-~~~~~R~~a~~~L~~i~~~~g~~~l~~l-lp~l~ 1702 (2629)
+.+.++ .+.....||..++.. +|.+..+.+ +|.+-
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence 555554 345566788777764 455555443 35443
No 117
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=89.11 E-value=13 Score=51.19 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHhhcC
Q 000049 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD---SDSTTVAAAWEALSRVVASVP 2185 (2629)
Q Consensus 2110 ~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~d---~d~~V~~~a~~aL~~l~~~~~ 2185 (2629)
+..++|.+..++-+.+..+...+..++..++.-.|....-.+|.++..+...++. ....-..++..+|..++..+.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4456677777788888888888999999998766644445567888888888876 444445667777777765443
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.02 E-value=52 Score=40.69 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHc
Q 000049 2243 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2629)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp~L~~~~~k~L 2322 (2629)
.+.|...+.-+.+++-+..+.-+ +++++.++....+. +.++|..+.+++.+.+.+- ..+++.+.+++...+
T Consensus 39 ~~~Kl~~L~q~~EL~l~~dpsLl----~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL 109 (386)
T 3o2t_A 39 NDSKITVLKQVQELIINKDPTLL----DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLL 109 (386)
T ss_dssp STHHHHHHHHHHHHHHTTCGGGG----GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 35677788888887655444433 45555667776665 7899999999999988753 346788899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-------ccCCh----h-------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC--C
Q 000049 2323 QDSTRTVRSSAALALGKLSA-------LSTRV----D-------PLVGDLLSSLQVSDAGIREAILTALKGVLKHAG--K 2382 (2629)
Q Consensus 2323 ~d~~~~vR~~Aa~aLg~l~~-------~~~~~----~-------~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g--~ 2382 (2629)
.|.+..|-..+..|.+.+-. ..+.. . .+-..++..+...+.++|..+++.+..+|.... .
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~ 189 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRM 189 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCC
Confidence 99999999999998888721 12322 1 222345555566679999999999999884211 0
Q ss_pred -----------Cc----------------ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 000049 2383 -----------SV----------------SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2629)
Q Consensus 2383 -----------~~----------------~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2629)
.+ .+.-...+++.|...+.++ +...-.+...||+.+++.-|. ....+++.
T Consensus 190 ~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~-~~~rIl~a 268 (386)
T 3o2t_A 190 ADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM-FMSEVIQA 268 (386)
T ss_dssp TTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG-GHHHHHHH
T ss_pred CCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH-HHHHHHHH
Confidence 11 0234567777777777753 444555677788888887774 55566665
Q ss_pred HHh
Q 000049 2434 LLN 2436 (2629)
Q Consensus 2434 ll~ 2436 (2629)
++.
T Consensus 269 L~~ 271 (386)
T 3o2t_A 269 YET 271 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.02 E-value=4.1 Score=45.18 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=84.9
Q ss_pred ccchhhHHHHHHHHhcC------CHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCC--CCHhHHHHHHHHH
Q 000049 2225 KALQPLLPIFLQGLISG------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR--FPWQVKSAILSTL 2296 (2629)
Q Consensus 2225 k~l~~ilp~ll~~L~~~------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~--~~~~vk~~al~~L 2296 (2629)
.|+++++|-|.+-+.++ +...-.........+...-. -.+.||+-+++++++..+-.+ .+..+|..|...+
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 46777888776555432 34444555666777776544 468999999999988776432 1237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Q 000049 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2629)
Q Consensus 2297 ~~L~~~~~~~l~p~lp~L~~~~~k~L~d~--~~~vR~~Aa~aLg~l 2340 (2629)
+.++++.+......-|.+.+++.+.+.|+ +....--|..+|..+
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 99999999887777899999999999997 566666666666655
No 120
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=87.57 E-value=29 Score=43.04 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000049 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lp~L~~~~ 2318 (2629)
+++.-...-+.-+..+.+.+++..+.+....+..-+.+.+... +..|-..|+.... .++.-+...-...+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 4433333445668889999988888888888877777777764 6677777776653 222222222223456666666
Q ss_pred HHHcCCC-CHHHHHHHHHHHHHHHhccCC
Q 000049 2319 IKCLQDS-TRTVRSSAALALGKLSALSTR 2346 (2629)
Q Consensus 2319 ~k~L~d~-~~~vR~~Aa~aLg~l~~~~~~ 2346 (2629)
.+..... |.+||..+..++..++.+++.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 6665555 999999999999998877653
No 121
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=85.53 E-value=41 Score=46.17 Aligned_cols=276 Identities=13% Similarity=0.146 Sum_probs=142.5
Q ss_pred HHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcC---CCHHHHHHHHHHHHHHhhhcCc
Q 000049 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2629)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2629)
++.++|.++.++.+++-.+...+..+|..+++..|......+|.++..+...|.. ..+.=-.+|+++|..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888888888889999999988833333456666666666655 3444445677788777755432
Q ss_pred -----hhHHhHHHHHHhccCCCChhHH--HHHHHHHhccccccC-----Ch--hhh---hhHHHHHHHhh---c------
Q 000049 1533 -----PEIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTV-----DA--PSL---ALLVPIVHRGL---R------ 1586 (2629)
Q Consensus 1533 -----~~i~~lvp~Ll~~l~d~~~~~r--~al~~L~~~~~~~~~-----~~--~~l---~~i~p~L~~~L---~------ 1586 (2629)
.++..++..++..+ |+++-.+ .+++.+.. +...+ .. ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 23334444444444 4443222 23333321 21111 00 000 00111111111 0
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHH
Q 000049 1587 ----ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661 (2629)
Q Consensus 1587 ----d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~l~~~~g~~~~~~ll~~ 1661 (2629)
|.+.+.+ .++.. + ..+..++..++..+..++.+ .+..+-.....++..+...+.++.++.++..
T Consensus 494 ~~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k 562 (799)
T 1vsy_4 494 TFRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASL 562 (799)
T ss_dssp SCCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred cccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111100 01111 1 13444556666667777663 3344445555666777777777777777777
Q ss_pred HHHHhccCCChHHHHHHHHH----HHHHHHhhChhHHHhHhHHHHHhhc----CC------Chhh--HH----HHHHHHH
Q 000049 1662 LLDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFK 1721 (2629)
Q Consensus 1662 Ll~~L~~~~~~~~R~~a~~~----L~~i~~~~g~~~l~~llp~l~~~l~----~~------~~~v--R~----~a~~~l~ 1721 (2629)
+.+...+............- +..++..-+. .+..++|.+...+. +. ..++ ++ -.+.++.
T Consensus 563 ~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~ 641 (799)
T 1vsy_4 563 LNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALN 641 (799)
T ss_dssp HHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHH
Confidence 77655543211111111111 3444444444 66777776664322 11 1111 22 3456677
Q ss_pred HhhhhhccchHhhHHhHHHHHHhhc
Q 000049 1722 YLPRSLGVQFQNYLQQVLPAILDGL 1746 (2629)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2629)
.+....|..+.+|-++++..+...+
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHH
Confidence 7777778888888887777665554
No 122
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=83.79 E-value=13 Score=43.06 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=93.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhH-HHHHHHHHhhCCccccCChhHHH
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2629)
.++..+..+...+.|-.|...+....+...++.+. .+..++. .-+.|..-... ...+..+++.+|...
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~-~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIP-FLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHH-HHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 35555666676778888877776655545444333 3444443 34567654322 234456666666532
Q ss_pred HHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000049 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2629)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~ 2552 (2629)
.+.+..-+.|+++.+|..|+.++ +.+... .....++..+...+.|++.=||.+...+|+.+++++|+.|.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQK------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGG------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhC------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999887764 222111 12344555556678899999999999999999999999999
Q ss_pred hhHHH
Q 000049 2553 VHVAL 2557 (2629)
Q Consensus 2553 ~~l~~ 2557 (2629)
+++..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=83.16 E-value=76 Score=36.97 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCc
Q 000049 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2629)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2629)
+.+-..+.-.++++-... +.+.+++++-+.....+++..+|.-.++.|+..+...+ +.+...++.+...+.+++.
T Consensus 30 ~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-ELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCH
Confidence 345555555555443321 22344444444444445556666666666666554433 2333333333332333333
Q ss_pred hhhHhHHHHHHHHHh-------hCCcc-ccCChhH---HHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcC-----
Q 000049 2444 AARHGSVLVFATFLR-------HNPSA-ISMSPLF---LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG----- 2507 (2629)
Q Consensus 2444 ~~~~~~~~~l~~~l~-------~~p~~-~~~~~~~---~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~----- 2507 (2629)
.+...++.+...++. .+|.. -.....| ..+-..+.+...+++..+|-+++.-+-.++..+....
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 333334443333321 11110 0001122 2345556666777888899888888888776543211
Q ss_pred ----------CCCch---------hhHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchh
Q 000049 2508 ----------PANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSA 2550 (2629)
Q Consensus 2508 ----------~~~~~---------~l~~~l~~l~~~l~~~--~~~vr~~al~~l~~~a~~~~~~ 2550 (2629)
|.+++ .-..++..++..+.++ +.-.=.+++.++..++++.|..
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 11111 1122444444444332 3334468888899999988875
No 124
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.70 E-value=37 Score=42.85 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000049 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2629)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lp~L~~~~ 2318 (2629)
++..-...-+.-|..+.+.+++..+.+.+..+..-+.+.+... +..|-..|+..+. .++.-+...-...+|-+.+.+
T Consensus 296 tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 296 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHH
Confidence 3433333445678889999998888888888877778887763 6677777776653 122211111112234444444
Q ss_pred HHHcCCC-CHHHHHHHHHHHHHHHhccC
Q 000049 2319 IKCLQDS-TRTVRSSAALALGKLSALST 2345 (2629)
Q Consensus 2319 ~k~L~d~-~~~vR~~Aa~aLg~l~~~~~ 2345 (2629)
.+..... |.+||..|..++..++.+.+
T Consensus 375 ~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 375 YRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp TSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 4433443 89999999999998877654
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=78.44 E-value=15 Score=42.17 Aligned_cols=141 Identities=9% Similarity=0.062 Sum_probs=93.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHH
Q 000049 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473 (2629)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i 2473 (2629)
.++..+..++.-+.|..++..++.......++.+ +++..++. .-+.|..-....-++..++..+|. .+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l-~~~~~~l~--~~~nWd~~D~~a~~~~~~~~~~~~---------~~ 125 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEEV-VAFKAYVP--QKAWWDSVDAWRKFFGSWVALHLT---------EL 125 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHH-HHGGGGTT--TTCSHHHHHHHHHHHHHHHHHSGG---------GH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHHH-HHHHHHhc--cCCcHHHHHHHHHHHHHHHHHChH---------HH
Confidence 5566666667777888888888877655444322 22333322 245665544332345555555554 24
Q ss_pred HHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000049 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2629)
Q Consensus 2474 ~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~ 2553 (2629)
.+.+..-+.|++..+|..|+.+. +.. ... .+....++.+-..++|++.=||++...+|+.+++++|+.+.+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~---l~~-~~~-----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQ---LML-KEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTT---TTC-GGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH---HHH-HHC-----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 55677788999999999988754 222 211 234455555555789999999999999999999999999988
Q ss_pred hH
Q 000049 2554 HV 2555 (2629)
Q Consensus 2554 ~l 2555 (2629)
++
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.47 E-value=38 Score=48.66 Aligned_cols=134 Identities=20% Similarity=0.197 Sum_probs=74.9
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHhhc-CCCCchhhHhHHHHHHHHHhh-CCc-cccCChhHHHHHHHHHhhhcCCCh
Q 000049 2411 AASILGIMSQ-CMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFLRH-NPS-AISMSPLFLSILDRLKSSLKDEKF 2486 (2629)
Q Consensus 2411 aa~~Lg~L~~-~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~-~p~-~~~~~~~~~~i~~~l~~~~~~~~~ 2486 (2629)
++..+..+.. ..|+.+....+..++... ...+...+..+.+++..++.. +.. ..+.......+.+.+.+.+.+.+.
T Consensus 375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~ 454 (1056)
T 1lsh_A 375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE 454 (1056)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence 3444433322 245555444444444311 112334566678888777643 111 122334456777778777777777
Q ss_pred hHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhc----CCCCHHHHHHHHHHHHHHHhhCchhhhhh
Q 000049 2487 PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL----HDDSSEVRRRALSALKSVAKANPSAIMVH 2554 (2629)
Q Consensus 2487 ~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l----~~~~~~vr~~al~~l~~~a~~~~~~v~~~ 2554 (2629)
.-+..++.|+|.+-. | ...+.+..++.+. .+....+|.+|+.+++.++...|..+++.
T Consensus 455 ~~~~~~LkaLGN~g~------p----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i 516 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQ------P----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI 516 (1056)
T ss_dssp HHHHHHHHHHHHHTC------G----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH
T ss_pred HHHHHHHHHhhccCC------h----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH
Confidence 777788888887522 1 1112222333221 23456788899999999998887776553
No 127
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=72.19 E-value=40 Score=40.47 Aligned_cols=136 Identities=15% Similarity=0.244 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhchhhhhHHHHH-HhcCC--CCHhHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000049 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR-IIGDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2629)
Q Consensus 2244 ~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~-~l~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~lp~L~~~~~ 2319 (2629)
.+|....+.+...++.... .+.....+++||+. +++|- ..++.| ..+|.++..++.+++..+.|.+|.+...+.
T Consensus 44 ~vKkeiLkLiet~i~~~~d--~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VF 121 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND--PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 121 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC--HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5566777888888876642 23334556666664 34431 123333 467888999999999999999999877665
Q ss_pred HH----cCC---CCHHHHHHHHHHHHHHHhc--------c-CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcC
Q 000049 2320 KC----LQD---STRTVRSSAALALGKLSAL--------S-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2629)
Q Consensus 2320 k~----L~d---~~~~vR~~Aa~aLg~l~~~--------~-~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2629)
.| .++ ..++.|..-..-|..+... . +.+..++..++.+++.++..+.+..+..+.+++.+..
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 43 333 3789999988888887432 2 2356677788888999999999999999999998764
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=69.06 E-value=2e+02 Score=34.56 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=55.5
Q ss_pred hhHHHHHhhccCCCchHHHHHHHHHHHHHHHhhcCCCccccccCCCCCCcccHHHHHHHHHHHhchhhHHHHHHHHHhhc
Q 000049 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2629)
Q Consensus 1774 ~~llp~l~~~l~d~~~~vR~sa~~ll~~ll~~~~~~~~k~~~~~~~ede~~~~~~~~~~l~~~Lg~e~~~~vl~~L~~~~ 1853 (2629)
+.+...+...+.++|+-+|+.++.++|+++-.-+ .......+++. .+.+..+...+
T Consensus 208 d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~---------------------N~~vM~~Yis~---~~nLkl~M~LL 263 (341)
T 1upk_A 208 DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH---------------------NFTIMTKYISK---PENLKLMMNLL 263 (341)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG---------------------GHHHHHHHTTC---HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch---------------------HHHHHHHHhCC---HHHHHHHHHHh
Confidence 3455666677889999999999999999984311 01223333332 23455555567
Q ss_pred cCccHHHHHHHHHHHHHHHhcC
Q 000049 1854 SDVSLSVRQAALHVWKTIVANT 1875 (2629)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~ 1875 (2629)
.|.+..++-.|.++++.++.+.
T Consensus 264 ~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 264 RDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCS
T ss_pred cCchhchhhhhhhheeeeeeCC
Confidence 9999999999999999999864
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=65.27 E-value=44 Score=38.19 Aligned_cols=138 Identities=7% Similarity=0.010 Sum_probs=71.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHH
Q 000049 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2629)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ 1420 (2629)
.++..|..++-.+.|..|+..+....+.+.. ..++.+...+....+|..-.....+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 3444444444456666666655543222111 23344455555555676555433222222221 1123
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhh
Q 000049 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2629)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2629)
+.+.+.....|++..+|..|..+. +..........+++.+...+.++++.++++....|..++...|+...
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 455566677777777777775543 12222222344555444466777777777777777777666555443
No 130
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=64.82 E-value=4.9e+02 Score=37.50 Aligned_cols=143 Identities=10% Similarity=-0.002 Sum_probs=89.7
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhcCChhHHH---HHHH
Q 000049 2356 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA---DLLQ 2432 (2629)
Q Consensus 2356 ~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~---~~l~ 2432 (2629)
..+++.++.++.........+.... +.-+.+.|+..|..+..+.+..-..+|...|..|+...|. .+. .++.
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~-~l~~~a~~l~ 481 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFF----DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS-AMRLNAAFVK 481 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-HHhHHHHHHH
Confidence 3346778889888777777777654 2456778887777766566666666788899999876654 333 3444
Q ss_pred HHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHhhhh
Q 000049 2433 ELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 2504 (2629)
Q Consensus 2433 ~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~ 2504 (2629)
.++..+.+-+....+..+..++.+.-..+.. -.....+++.=.+.+.+.+....++.-++.+.-.++.+-+
T Consensus 482 giLD~l~~l~~~QiRklf~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 482 GILDYLENMSPQQIRKIFCILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp GGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
Confidence 4444443333333333444454443222211 1224667888889999999999888887776666655543
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.56 E-value=76 Score=33.22 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=61.8
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2629)
+.+....+..|.+.+++.++.+...|+.++..+.++.+..+...+ .+++..+..++...++.|++...+.+.......
T Consensus 37 ~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 37 RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 356778888899999999999999999999999999887665333 456666666666678899988888777776555
Q ss_pred Cc
Q 000049 2185 PK 2186 (2629)
Q Consensus 2185 ~~ 2186 (2629)
+.
T Consensus 117 ~~ 118 (140)
T 3ldz_A 117 KN 118 (140)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=59.40 E-value=1.6e+02 Score=35.46 Aligned_cols=141 Identities=12% Similarity=0.069 Sum_probs=86.9
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCC------hhHHHHHHHHh
Q 000049 2285 PWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR------VDPLVGDLLSS 2357 (2629)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lp-~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~------~~~ll~~Ll~~ 2357 (2629)
+...+.-++..|..++..-..+...|+. +=...+++...+.+.+...-+..||+.+|.+... -..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 3444555555566544432222222221 1234566666667888999999999999776221 24566777777
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHH-----------HHHHHHHhhc---CCCHHHHHHHHHHHHHHHhcCC
Q 000049 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR-----------VYSVLKDLVY---HDDDHVRVSAASILGIMSQCME 2423 (2629)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~-----------i~~~L~~~l~---~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2629)
+...+..|...++.-|..++.....+. .-+... .|..|..++. +.+..+...+..+|.++....|
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 777778999999988887776542222 111111 1445556665 5677888888888888877777
Q ss_pred hhH
Q 000049 2424 DGQ 2426 (2629)
Q Consensus 2424 ~~~ 2426 (2629)
+++
T Consensus 290 d~d 292 (339)
T 3dad_A 290 DQD 292 (339)
T ss_dssp SHH
T ss_pred Chh
Confidence 543
No 133
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=58.13 E-value=1.3e+02 Score=35.96 Aligned_cols=139 Identities=15% Similarity=0.227 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhcChh---hHhhhHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHhccchhhhHHHHHh-----
Q 000049 1859 SVRQAALHVWKTIVANTPK---TLKEIMPVLMNTLISSLASSSSERRQ-VAGRALGELVRKLGERVLPSIIPILS----- 1929 (2629)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~~~---~l~~~l~~Ll~~L~~~L~~~~~~~R~-~A~~~L~~lv~~~~~~~l~~llp~L~----- 1929 (2629)
.||+..++.+...+...+. ....++|.++..++.-.....++.|. ....++..++.+++..+.+.+-.++.
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~ 123 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 123 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4666677777777765442 23456666666555444444444443 35677888888888765443332222
Q ss_pred --hhcC---CCChhHHHHHHHHHHHHHHhhchhhH---HHhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000049 1930 --RGLK---DPSASRRQGVCIGLSEVMASAGKSQL---LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2629)
Q Consensus 1930 --~~L~---d~~~~vR~~a~~aL~~li~~~~~~~l---~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2629)
.+++ ++.|+.|.+-...|..+...+-+.-+ .+..+.++..+.-+..+++.+|.+.+...+..+.+.+.
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 2334 35699999988888887765543222 34557778888888999999999999888877776653
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.37 E-value=49 Score=34.67 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=51.1
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2629)
..+..|.+-+.++ ++++..-|+..+..+...+|..|...+ ..++.-+...+...++.||+.+...+..-...+
T Consensus 42 ~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 42 DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 5677888888776 899999999999999999997665443 234444444444467788887766665554433
No 135
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=53.58 E-value=3.6e+02 Score=32.40 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=89.4
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hccC--chhHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEK-LGRL--FEPYVI---QMLPLLLVAFSDQVVAVREAAECAARAMMSQ- 1450 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~-~~~~--~~~~v~---~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~- 1450 (2629)
+++..|...+..= ++..|.-+...|..+... .|.. ...|+. +++..++.+..+++. --.+...++.|+..
T Consensus 78 dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di--Al~~G~mLRecir~e 154 (341)
T 1upk_A 78 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI--ALNCGIMLRECIRHE 154 (341)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT--HHHHHHHHHHHHTSH
T ss_pred CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh--HhHHHHHHHHHHHhH
Confidence 4455555555443 677777777777766652 1211 223443 688888888876632 22233333333321
Q ss_pred -hcHHhH-HhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCc----hhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHH
Q 000049 1451 -LSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2629)
Q Consensus 1451 -l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p----~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2629)
+...-. ...+-.+++..+.++..+-..|...+..+....+ +.+...+..++...-.++..++--.|..+.+-|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 000000 1233356677777888888778777776655433 3455566778888888888888888999988888
Q ss_pred HHhhh
Q 000049 1525 QVGSV 1529 (2629)
Q Consensus 1525 ~l~~~ 1529 (2629)
.+.-.
T Consensus 235 elLld 239 (341)
T 1upk_A 235 ELLLD 239 (341)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 87653
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=52.67 E-value=76 Score=33.56 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=54.9
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2629)
..+..|.+-+.++ ++++..-|+..+..+...+|..|...+. .++.-+...+.+ .++.||+.+...+..-..
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888776 8999999999999999999987765553 567767766654 367899887766665544
Q ss_pred hh
Q 000049 1450 QL 1451 (2629)
Q Consensus 1450 ~l 1451 (2629)
.+
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.65 E-value=70 Score=34.48 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=51.2
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l 1451 (2629)
..+..|.+-+.++ +++++.-|+..+..+...+|..|...+. .++.-+...+.. .++.||+.+...+..-...+
T Consensus 52 eA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 52 DCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 5677788888776 8999999999999999999976654432 344444444433 56788888776665554433
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.72 E-value=1.3e+02 Score=32.42 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=61.8
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2629)
..+....+..|.+.+++.++.++..|+.++..+.++.+..|...+ ..++..|..++.. .++.|++.+.+.+......
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999876654332 3466666666654 6789999988888777766
Q ss_pred cCc
Q 000049 2184 VPK 2186 (2629)
Q Consensus 2184 ~~~ 2186 (2629)
.+.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 554
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=51.70 E-value=77 Score=33.55 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=54.0
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2629)
..+..|.+-+.+. ++++...|+..+..+...+|..|...+. +++.-+...+.+ .++.||+.....+..-..
T Consensus 48 ~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888776 8999999999999999999976655442 456666666654 467888887766666554
Q ss_pred hh
Q 000049 1450 QL 1451 (2629)
Q Consensus 1450 ~l 1451 (2629)
.+
T Consensus 127 ~f 128 (149)
T 3g2s_A 127 GL 128 (149)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=48.21 E-value=2.9e+02 Score=33.24 Aligned_cols=110 Identities=18% Similarity=0.103 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchh-hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC---CCc
Q 000049 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG---IAL 2307 (2629)
Q Consensus 2232 p~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~---~~l 2307 (2629)
..+++.|.+++.+.+..+...|..+...-. .-...|+. .-..-|++++.+. ..+....+|.+|..+..... ..+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~-~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDK-DLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCT-THHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcch-HHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchh
Confidence 345677778888888888999988664221 33344442 2245678887664 88899999999998865321 111
Q ss_pred cCchHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Q 000049 2308 KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345 (2629)
Q Consensus 2308 ~p~lp~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~ 2345 (2629)
. -|.++..+...+...+..|-..|...|-.++.+.+
T Consensus 199 s--~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 199 A--HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp H--CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred C--CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 1 25666667777776688888888888887776654
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.22 E-value=1.2e+02 Score=32.96 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~d------~d~~V~~~a~~aL~ 2178 (2629)
..+....+..|.+.+++.++.+...|+.++..+.++.+..|...+ .+++..|..++.. .+..|++.+.+.+.
T Consensus 45 ~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999876654332 4667778887752 36789999998888
Q ss_pred HHHhhcCc
Q 000049 2179 RVVASVPK 2186 (2629)
Q Consensus 2179 ~l~~~~~~ 2186 (2629)
......+.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 88776654
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=44.73 E-value=5.8e+02 Score=32.27 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHHhccc--hhhh--HHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000049 1898 SSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2629)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~--~l~~--llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2629)
++.+-..|+.=+|++++..+.. +... .-..+.+.+.++|++||..|..++..++.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4566777888889999887654 2221 23445567889999999999999887764
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=44.22 E-value=5.8e+02 Score=32.10 Aligned_cols=236 Identities=14% Similarity=0.138 Sum_probs=116.6
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCC---
Q 000049 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCME--- 2423 (2629)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~--- 2423 (2629)
.++..|+..+.++|+.-|...-..|+.+-.+.... ..-.+..|-+.+...+... ..++- -..+.+|.+..-..
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R~~Irk~i~nif~~fi~e~e~~nGIa-eLLeilgSIinGfa~PL 239 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTT-HHHHHHHHHHHHHHHHHTCSCCSCHH-HHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCHH-HHHHHHHHHHhccCCCC
Confidence 46677777777777777776666666666554221 1122333334333333221 21221 23445555544332
Q ss_pred hhHHHHHHH-HHHhhcCCCCchhhH-hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHHHh
Q 000049 2424 DGQLADLLQ-ELLNLASSPSWAARH-GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2629)
Q Consensus 2424 ~~~~~~~l~-~ll~~~~~~~~~~~~-~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2629)
.++...++. -++..........-+ ....++..++...|. +.+.++..+..+.-..+..-.---..-+..++.
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~------L~~~vi~~LLk~WP~tns~KevlFL~eleeile 313 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST------LTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG------GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH------hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 122333333 233333333332221 123344455555543 345677777766655443322222333334443
Q ss_pred hhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH----HHHHHHHHhhhcC-Ccchhhhh
Q 000049 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV----ALFGPALAECLKD-GSTPVRLA 2576 (2629)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~~l----~~l~p~l~~~~~~-~~~~vk~a 2576 (2629)
...+. +......++...+..++++.+..|-..|+...+.--- -..+.++- +.+.|+|+...+. =|..|+..
T Consensus 314 ~~~~~--ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i--~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 314 VIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYI--MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp TCCHH--HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHH--HHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred hCCHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHH--HHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 32211 1113345566777778889998887777765431100 01223333 4445555554433 36779999
Q ss_pred HHHHHHHHhccccCchhHHHHH
Q 000049 2577 AERCAVHAFQLTRGSEYIQGAQ 2598 (2629)
Q Consensus 2577 ae~a~~~l~~~~~~~~~~~~~~ 2598 (2629)
+.+++-.+.++- .+.++.|.
T Consensus 390 a~~vlk~l~e~d--~~lf~~c~ 409 (449)
T 2npp_B 390 IYNALKLFMEMN--QKLFDDCT 409 (449)
T ss_dssp HHHHHHHHHTTC--HHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHHH
Confidence 999999888773 45555544
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.55 E-value=1.1e+02 Score=33.34 Aligned_cols=73 Identities=18% Similarity=0.070 Sum_probs=54.0
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2629)
..+..|.+-+.+. ++++..-|+..+..+...+|..|...+. .++.-+...+.. .+..||+.+...+..-..
T Consensus 50 ~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888876 8999999999999999999976765443 456666666542 357899888777766655
Q ss_pred hh
Q 000049 1450 QL 1451 (2629)
Q Consensus 1450 ~l 1451 (2629)
.+
T Consensus 129 ~f 130 (171)
T 1juq_A 129 AL 130 (171)
T ss_dssp HC
T ss_pred Hc
Confidence 44
No 145
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=42.77 E-value=1.9e+02 Score=29.66 Aligned_cols=106 Identities=11% Similarity=0.133 Sum_probs=70.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHH
Q 000049 2316 TTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSV 2395 (2629)
Q Consensus 2316 ~~~~k~L~d~~~~vR~~Aa~aLg~l~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~ 2395 (2629)
...+..|++..+.+...+..|+.+ ......++.-+.+.++...+..|-..+.-+..|+..++..-...|.+.+...
T Consensus 11 ~~~L~~L~~s~~sI~~~s~w~l~h----~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~ 86 (132)
T 4flb_A 11 DRKFQSVTNTMESIQGLSSWCIEN----KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADV 86 (132)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHT----GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTT
T ss_pred HHHHHHCcccHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 344556766667777777777654 2345667777777788888888999999999999988765555677776666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHHh--cCChh
Q 000049 2396 LKDLVYHD-DDHVRVSAASILGIMSQ--CMEDG 2425 (2629)
Q Consensus 2396 L~~~l~~~-~~~vr~~aa~~Lg~L~~--~~~~~ 2425 (2629)
+...+..- ++..|.....++..--. ++|++
T Consensus 87 l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~~ 119 (132)
T 4flb_A 87 LPEAAALVKDPSVSKSVERIFKIWEDRNVYPEE 119 (132)
T ss_dssp HHHHHHTTCSTTTHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCCcCHH
Confidence 66555442 45566665566655432 45543
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.51 E-value=2.1e+02 Score=30.20 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=53.1
Q ss_pred hhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhc--cchHHHHhhhhcC------CCHHHHHHHHHHHHHHhhh
Q 000049 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L~D------~~~~VR~aA~~aL~~l~~~ 1529 (2629)
..+..+...+.+.+..+..-|+.+|..+...|...+...+ .+++..|.+++.+ +++.||..+...+...+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444455566777888888888999888887766543222 3455556666653 5889999999999999887
Q ss_pred cCc
Q 000049 1530 IKN 1532 (2629)
Q Consensus 1530 ~~~ 1532 (2629)
+++
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 763
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=41.44 E-value=1.5e+02 Score=31.75 Aligned_cols=106 Identities=9% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHHHHhhc----CCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1339 VSRLLDQLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1339 l~~ll~~L~~----~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
+..+++..++ ++||..- ..+..++..- ... ....+..|.+-+.+.++++++.-|+..+..+...+|..|
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~----leicD~I~~~-~~~--~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALN----MEICDIINET-EEG--PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHH----HHHHHHHHHS-SSH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHH----HHHHHHHhCC-Ccc--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 4455555554 3456533 3344444322 222 225677788888744489999999999999999999767
Q ss_pred hhHHH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHhh
Q 000049 1415 EPYVI--QMLPL-LLVAFS---DQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1415 ~~~v~--~ilp~-ll~~l~---D~~~~VR~aa~~al~~i~~~l 1451 (2629)
...+. .++.- +...+. ++...||+.+...+..-...+
T Consensus 90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 65443 35554 445443 456789988876666654443
No 148
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.17 E-value=2.6e+02 Score=31.89 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHhhcCCCcHHHHHHHHHhhhhhHhhhccchHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHhhhCcchhhhhcHHH
Q 000049 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA-FGLAGVVKGFGISSLKKYGIAA 1381 (2629)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~l~~~~~~~~~~ll~~ll~~L~~~~~~~~R~~Aa-~~L~~l~~~lg~~~l~~~~i~~ 1381 (2629)
+.+...+.++..+.|..+...+........++....+..++ ...++|..-...+ ..++.++...+. .+.+
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l---~~~~nWd~~D~~a~~~~g~~~~~~p~------~~~~ 134 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELI---VTKSWWDSVDSIVPTFLGDIFLKHPE------LISA 134 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHH---TSSCCHHHHHHHTTTHHHHHHHHCGG------GGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---ccCCChHHHHHhhHHHHHHHHHHCHH------HHHH
Confidence 44455666777888888877776443333332223333333 3456788777653 445555543211 2345
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000049 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2629)
.+.+.+.+++.|..|-+.... ++.........+++.+...+.|++..||.+..-+++.+...
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~-------l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQ-------LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTT-------TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCchHHHHHHHHHH-------HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 677888888666666444332 22111222345666777788999999999999999888655
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=38.08 E-value=98 Score=32.25 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred HHHHHHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhHHhHHH
Q 000049 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2629)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2629)
++.+......+.+.++++.|.+-+++.++.++--++.++.+++..-++.|...+..-+.
T Consensus 35 IA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 35 ICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 33333333335568899999999999999999999999999987766666665554333
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=37.32 E-value=60 Score=33.84 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc-----CC------ChhHHHHHHHH
Q 000049 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DS------DSTTVAAAWEA 2176 (2629)
Q Consensus 2108 ~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~~~il~~Ll~ll~-----d~------d~~V~~~a~~a 2176 (2629)
+.+..+|+.|.+++++.++.+..-|+.+|..++.+....+...+..=...+-.+.+ |+ ...||..|-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 44689999999999999999999999999999988776665544333322222221 21 14788888888
Q ss_pred HHHHHh
Q 000049 2177 LSRVVA 2182 (2629)
Q Consensus 2177 L~~l~~ 2182 (2629)
+..+..
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 777754
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=37.22 E-value=2.3e+02 Score=29.83 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=54.3
Q ss_pred HhHhHHHHHhhcCCChhhHHHHHHHHHHhhhhhccchHhhH--HhHHHHHHhhcCC------CChhHHHHHHHHHHHHHH
Q 000049 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLVE 1766 (2629)
Q Consensus 1695 ~~llp~l~~~l~~~~~~vR~~a~~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d------~~~~VR~~al~al~~iv~ 1766 (2629)
.+.+..|.+-+++.++.+.-.++.++..+...+|..|...+ ..++..+.+.+.+ .+..|+..++..+..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45566677778899999999999999999999999886655 3466667766653 356788877665554433
Q ss_pred Hh
Q 000049 1767 HY 1768 (2629)
Q Consensus 1767 ~~ 1768 (2629)
.+
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 33
No 152
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=36.14 E-value=1.8e+02 Score=29.91 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred hhcHHhHHhhHHHHHhhhccCChhhhHHHHHHHHHHHhhCchhhhhhccchHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000049 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2629)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2629)
.++...+..++|.|+..|++-+|.+....+..|..+- ..++|.+.++++..+..=. .+.|..+...
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 3455677899999999999999999888888876532 3456666666755443322 3445555554
Q ss_pred cCchhHHhHHHHHHhccCCCC
Q 000049 1530 IKNPEIASLVPTLLMGLTDPN 1550 (2629)
Q Consensus 1530 ~~~~~i~~lvp~Ll~~l~d~~ 1550 (2629)
+...-...+.+.|......|+
T Consensus 89 ~~~~~~~~l~~eL~rl~~~pt 109 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSSLEI 109 (134)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 443344666677766666663
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.79 E-value=2.1e+02 Score=32.51 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred HHHHHHHhhc----CCCHHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCc
Q 000049 1339 VSRLLDQLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2629)
Q Consensus 1339 l~~ll~~L~~----~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~ 1414 (2629)
++.+++..++ ++||. ....+..++..- ... ....+..|.+-+.++ ++++...|+..++.+...+|..|
T Consensus 9 ~~~~i~kAT~~~~~~~dw~----~ileicD~I~~~-~~~--~k~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWE----SILQICDLIRQG-DTQ--AKYAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHH----HHHHHHHHHHTT-SSC--HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCcCHH----HHHHHHHHHhCC-Ccc--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHH
Confidence 3445555544 34554 334444455432 111 225677888888876 89999999999999999999755
Q ss_pred hhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhh
Q 000049 1415 EPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQL 1451 (2629)
Q Consensus 1415 ~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l 1451 (2629)
...+. .++..|...++ ..++.||+.+...+..-...+
T Consensus 81 ~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 44332 23333333332 356788888777666655444
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.93 E-value=4.1e+02 Score=30.15 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
+.+....+..|.+.+++.++.+...|+.++..+.++.+..+-..+ .+++..|..+++ ..+..|++.+.+.+......
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999998876543221 344445555444 45788999998888887766
Q ss_pred cCcc
Q 000049 2184 VPKE 2187 (2629)
Q Consensus 2184 ~~~~ 2187 (2629)
...+
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 5543
No 155
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=28.52 E-value=5.3e+02 Score=26.93 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH------
Q 000049 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS------ 2419 (2629)
Q Consensus 2346 ~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~------ 2419 (2629)
....++..+-..++...+..+-..+.-+..|+.++|......+...+.+.+.+.....++.+|....+++..--
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC
Confidence 34566666667777778999999999999999998877655555666666666666678899988888888776
Q ss_pred -hcCChhHHHH
Q 000049 2420 -QCMEDGQLAD 2429 (2629)
Q Consensus 2420 -~~~~~~~~~~ 2429 (2629)
..+|++.+.+
T Consensus 120 ~~vF~~~~l~~ 130 (144)
T 1sz9_A 120 LPLFEGSALEK 130 (144)
T ss_dssp SCSSCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 3466544444
No 156
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=28.36 E-value=17 Score=30.45 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=12.6
Q ss_pred hcchhhHHhhhcChhHHH
Q 000049 251 IVLPASIKMLKRNPEIIL 268 (2629)
Q Consensus 251 ~ilP~~eKalLRsPE~~l 268 (2629)
.||-.=.-+||||||++=
T Consensus 19 qVLNqKk~SLLRsPEVI~ 36 (62)
T 2kw3_C 19 QVLNQKRLSLLRSPEVVQ 36 (62)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHH
Confidence 344444568999999964
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.29 E-value=1.9e+02 Score=32.78 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=49.6
Q ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHh
Q 000049 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQ 1450 (2629)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~Al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~ 1450 (2629)
..+..|.+-+.++ ++++..-|+..++.+...+|..|...+. .++..+...++ ..+..||+.+.+.+..-...
T Consensus 42 ~a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 42 NAFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 5677787778776 8999999999999999999976644332 23444333333 45678888776666555443
No 158
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.73 E-value=1e+03 Score=29.38 Aligned_cols=262 Identities=11% Similarity=0.118 Sum_probs=148.7
Q ss_pred CHhHHHHHHHHHHHHHHhcC---CCccCchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHH----HhccCChhHHHHHHHH
Q 000049 2285 PWQVKSAILSTLSIIIRKGG---IALKPFLPQ-LQTTFIKCLQDSTRTVRSSAALALGKL----SALSTRVDPLVGDLLS 2356 (2629)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~---~~l~p~lp~-L~~~~~k~L~d~~~~vR~~Aa~aLg~l----~~~~~~~~~ll~~Ll~ 2356 (2629)
.|.-...+.+.+..++..-. ...+.|+++ +...++..+..+++.-|...-..|.++ +.+.+.+...+..++-
T Consensus 97 sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~ 176 (403)
T 3fga_B 97 AWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 176 (403)
T ss_dssp THHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56666666777766655421 112455544 566677788888888888777777665 2222222222222222
Q ss_pred h-hhcCC--HHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000049 2357 S-LQVSD--AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD-HVRVSAASILGIMSQCMEDGQLADLLQ 2432 (2629)
Q Consensus 2357 ~-l~~~d--~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~-~vr~~aa~~Lg~L~~~~~~~~~~~~l~ 2432 (2629)
. +.+++ .++ ...++.++.++.+....+.+.+..-+...|..+-....- .....-+.|+.......|. -...++.
T Consensus 177 ~fiye~e~~~GI-aeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~-L~~~vi~ 254 (403)
T 3fga_B 177 RFIYETEHHNGI-AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVM 254 (403)
T ss_dssp HHHHTTCCCTTH-HHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHhcCcccCCCH-HHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch-hHHHHHH
Confidence 2 22222 233 357888999999887777677766666666665544322 2224556777777665553 4566777
Q ss_pred HHHhhcCCCCchhhHhHHHH-HHHHHhhCCccccCChhHHHHHHHHHhhhcCCChhHHHhHHHHhHHH-HhhhhhcCCCC
Q 000049 2433 ELLNLASSPSWAARHGSVLV-FATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL-LLHQIQSGPAN 2510 (2629)
Q Consensus 2433 ~ll~~~~~~~~~~~~~~~~~-l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l-l~~~~~~~~~~ 2510 (2629)
.++. .-+.....+...++. +..++..-+..-+ ......+...+...+.|.+..+.+.|..-...- +...... +
T Consensus 255 ~LLk-~WP~tns~KevlFL~Ele~iLe~~~~~~f-~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~---n 329 (403)
T 3fga_B 255 ALLK-YWPKTHSPKEVMFLNELEEILDVIEPSEF-VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD---N 329 (403)
T ss_dssp HHHH-TCCSSCHHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT---T
T ss_pred HHHH-hCCCCCcHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH---h
Confidence 7665 223333445444432 3334433322211 123445677777888888888877665543211 1110010 1
Q ss_pred chhh-HHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000049 2511 TTVV-VDILASVVSA-LHDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2629)
Q Consensus 2511 ~~~l-~~~l~~l~~~-l~~~~~~vr~~al~~l~~~a~~~~~~v~~ 2553 (2629)
...+ .-+.+.+.+. -++-+..||.++..+++.+-...|.+...
T Consensus 330 ~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~ 374 (403)
T 3fga_B 330 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD 374 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 1222 3344555453 46889999999999999999988877644
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.72 E-value=3.8e+02 Score=30.25 Aligned_cols=80 Identities=9% Similarity=0.041 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000049 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~Ll~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2629)
+.+....+..|.+.+++.++.+...|+.+|..+.++.+..+-..+ .+++..|..++. ..+..|++.+.+.+......
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999998876553322 335555555554 45688998888777777665
Q ss_pred cCc
Q 000049 2184 VPK 2186 (2629)
Q Consensus 2184 ~~~ 2186 (2629)
...
T Consensus 117 f~~ 119 (220)
T 1dvp_A 117 FRS 119 (220)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 160
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=24.81 E-value=4.7e+02 Score=26.94 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHhhChhHHHhHhHHHHHhhcCCChhhHHHHHHHHHHh
Q 000049 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2629)
Q Consensus 1686 ~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a~~~l~~L 1723 (2629)
+..+|.+.+.+++|.++..++|.+|.+-..+...|..+
T Consensus 21 L~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~ 58 (134)
T 3ut4_A 21 LCKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH 58 (134)
T ss_dssp HTTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc
Confidence 34557778899999999999999999988777776643
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.43 E-value=6.1e+02 Score=29.21 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred hhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 000049 2266 KEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2629)
Q Consensus 2266 ~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~~~~~l~p~l--p~L~~~~~k~L~d~~~~vR~~Aa~aLg~l~~ 2342 (2629)
+.+++-..-|++..-.. +.-.-.|.++|.++|.+++.-+..+-.|+ .++++..++.+...++-.|..|..-+.++..
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 34445555666655432 22245899999999999876555555554 3578888888888899889888888877743
Q ss_pred ccCChhHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhhcCCCcChHHHHHHHHHHHHh
Q 000049 2343 LSTRVDPLVGDLLSSLQV--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2629)
Q Consensus 2343 ~~~~~~~ll~~Ll~~l~~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2629)
-. .+++. ...+--.++...|+.++.......+.-..+.|+.....+
T Consensus 175 dd-----------~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 175 DD-----------TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp SH-----------HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cc-----------hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 11 11111 123444555666666666554444444455555555444
No 162
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.68 E-value=6.7e+02 Score=26.51 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhchhhhhhhH--HHHHHH-HHHHhc---CCChhHHHHHHHHHHH
Q 000049 2107 EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLS---DSDSTTVAAAWEALSR 2179 (2629)
Q Consensus 2107 ~~~~~~ll~~Ll~~l~-d~~~~vR~~a~~~L~~l~~~~~~~~~~~~--~~il~~-Ll~ll~---d~d~~V~~~a~~aL~~ 2179 (2629)
+.+....+..|.+.++ +.++.++..|+.++..+.++.+..+...+ .+++.. |+..+. +++..|++.+.+.+..
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4567888899999997 58899999999999999999887665433 456666 666664 3456888888877777
Q ss_pred HHhhcC
Q 000049 2180 VVASVP 2185 (2629)
Q Consensus 2180 l~~~~~ 2185 (2629)
......
T Consensus 128 W~~~f~ 133 (157)
T 1elk_A 128 WADAFR 133 (157)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 665543
No 163
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=23.32 E-value=7.7e+02 Score=27.99 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHhhhcCCChhHHHhHHHHhHHHHhhhhhcCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000049 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2629)
Q Consensus 2474 ~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~vr~~al~~l~~~a~~~~~~v~~ 2553 (2629)
.+.+..-+.|++...|..|+..-+.++.....+.+ .......++..+...+.|++.=||.+.-.+|+.+++++|+.+..
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~-~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~ 188 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAF-SESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK 188 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGS-CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCc-ChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 45566778899999999988844433332111111 12456777887777899999999999999999999999998877
Q ss_pred hHH
Q 000049 2554 HVA 2556 (2629)
Q Consensus 2554 ~l~ 2556 (2629)
.+.
T Consensus 189 al~ 191 (235)
T 1t06_A 189 AVE 191 (235)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 164
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=23.03 E-value=4.7e+02 Score=26.70 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=55.8
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhchh----hh
Q 000049 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL----YL 2147 (2629)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~~~~ll~~Ll~~l~d~~~~vR~~a~~~L~~l~~~~~~----~~ 2147 (2629)
+...+...++.|....+.++..+.+|+... .+...++..+.+.+....+..|...++++..++.+++. .+
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 344455566677766677887777777543 34556677777777677788999999999999887643 33
Q ss_pred hhhHHHHHHHHHHHh
Q 000049 2148 VDEAPNMISTLIVLL 2162 (2629)
Q Consensus 2148 ~~~~~~il~~Ll~ll 2162 (2629)
.+.+...++..+...
T Consensus 80 ~~~f~~~l~~~~~~~ 94 (132)
T 4flb_A 80 RESFADVLPEAAALV 94 (132)
T ss_dssp HHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 343444444444444
No 165
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=20.57 E-value=1e+03 Score=29.37 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=88.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcChhhhhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCcc
Q 000049 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 2308 (2629)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~ 2308 (2629)
++--++..+.+.++..|......|..+..... ..++++.. |...+.+.+.+......-...|+.++.+.......++
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~--~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLK 252 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 252 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 45556677778888889888888888876653 46666633 3344566665543344456678888888776544444
Q ss_pred CchHH-HHHHHHHHcCCCC-HHHHHHHHHHHHHHHhccCCh-hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcCCCcC
Q 000049 2309 PFLPQ-LQTTFIKCLQDST-RTVRSSAALALGKLSALSTRV-DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS 2385 (2629)
Q Consensus 2309 p~lp~-L~~~~~k~L~d~~-~~vR~~Aa~aLg~l~~~~~~~-~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~ 2385 (2629)
+-..+ +.+.++.....++ ...-..-+.|+-.+..-+|.+ .+++..|+.-=-.++.......+.=+.+++...+...-
T Consensus 253 eehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f 332 (392)
T 2jak_A 253 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 332 (392)
T ss_dssp HHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 32222 2222222222221 112223334444443333322 23333333221112223334455555555554433222
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHH
Q 000049 2386 SAVKIRVYSVLKDLVYHDDDHVRV 2409 (2629)
Q Consensus 2386 ~~~~~~i~~~L~~~l~~~~~~vr~ 2409 (2629)
......++..+..++.+.+-.|.+
T Consensus 333 ~~i~~~lF~~la~ci~S~hfqVAE 356 (392)
T 2jak_A 333 VKIMEPLFRQLAKCVSSPHFQVAE 356 (392)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHH
Confidence 344555555555555555544443
Done!