BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000050
(2622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ +++ ++ +K +LP L + E W+
Sbjct: 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 149
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 150 EKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 210 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 269 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 326
Query: 1649 GMGEEN-FPDL 1658
+GE++ P+L
Sbjct: 327 NVGEDDAIPEL 337
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%)
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
E + VA L +V + + +++P L+ + + + + + + M A K Q+
Sbjct: 110 EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
M ELIP + + D+ EV+ +A A + ++ + I+ +P+L+ + D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 11/283 (3%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXX 1442
L +G+ D+ +A A+ A L EPY++Q++P + ++
Sbjct: 53 LAKGIKDKKTAANAXQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASE 111
Query: 1443 XXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
+++ ++ +K +LP L + E W+ K + + A A Q++ P+++
Sbjct: 112 TLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAXVDAAKDQVALRXPELI 171
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
P L+E DT +V++A A + + N +I +P+L+ + DP + ++ +L
Sbjct: 172 PVLSETXWDTKKEVKAAATAAXTKATETVDNKDIERFIPSLIQCIADPTE-VPETVHLLG 230
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
TTFV V +L++ VP++ RGL ER K+K+A I+ N C LV +P+ + P++G LL
Sbjct: 231 ATTFVAEVTPATLSIXVPLLSRGLNERETGIKRKSAVIIDNXCKLVEDPQVIAPFLGKLL 290
Query: 1622 PEVKK---VLVDPIPEVRSVAARAIGSLIR--GMGEEN-FPDL 1658
P +K + D PE R V RA+ +L R +GE++ P+L
Sbjct: 291 PGLKSNFATIAD--PEAREVTLRALKTLRRVGNVGEDDAIPEL 331
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 11/283 (3%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXX 1442
L +G+ D+ +A A+ A L EPY++Q++P + ++
Sbjct: 59 LAKGIKDKKTAANAXQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASE 117
Query: 1443 XXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
+++ ++ +K +LP L + E W+ K + + A A Q++ P+++
Sbjct: 118 TLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAXVDAAKDQVALRXPELI 177
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
P L+E DT +V++A A + + N +I +P+L+ + DP + ++ +L
Sbjct: 178 PVLSETXWDTKKEVKAAATAAXTKATETVDNKDIERFIPSLIQCIADPTE-VPETVHLLG 236
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
TTFV V +L++ VP++ RGL ER K+K+A I+ N C LV +P+ + P++G LL
Sbjct: 237 ATTFVAEVTPATLSIXVPLLSRGLNERETGIKRKSAVIIDNXCKLVEDPQVIAPFLGKLL 296
Query: 1622 PEVKK---VLVDPIPEVRSVAARAIGSLIR--GMGEEN-FPDL 1658
P +K + D PE R V RA+ +L R +GE++ P+L
Sbjct: 297 PGLKSNFATIAD--PEAREVTLRALKTLRRVGNVGEDDAIPEL 337
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 217/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 61 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 112
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 113 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 171
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 172 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 290 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 349
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 350 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 402
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 403 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 459
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 460 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 516
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 517 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 575
Query: 2100 TVTL 2103
++L
Sbjct: 576 VLSL 579
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 234 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 291
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 1567
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 292 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 351
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 352 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 402
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 403 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 462
Query: 1688 ALGTVY-FEHILPDII 1702
G + I+P ++
Sbjct: 463 KFGKEWAHATIIPKVL 478
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 217/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 63 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 114
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 115 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 173
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 174 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 351
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 404
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 405 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 461
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 462 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 518
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 519 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 577
Query: 2100 TVTL 2103
++L
Sbjct: 578 VLSL 581
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 236 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 293
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 1567
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 294 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 353
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 354 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 404
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 405 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 464
Query: 1688 ALGTVY-FEHILPDII 1702
G + I+P ++
Sbjct: 465 KFGKEWAHATIIPKVL 480
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 217/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 69 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 120
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 180 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 410
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 411 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 468 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 524
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2100 TVTL 2103
++L
Sbjct: 584 VLSL 587
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 109/252 (43%), Gaps = 14/252 (5%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 299
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDA 1571
A +++ + +N ++ ++P + ++D N H K +L +++ + + D
Sbjct: 300 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 360 -TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDA 414
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
VR + L +G E F + ++ L A D+ R A L +++ G
Sbjct: 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474
Query: 1692 VY-FEHILPDII 1702
+ I+P ++
Sbjct: 475 EWAHATIIPKVL 486
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 217/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 70 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 121
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 122 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 180
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 181 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 411
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 412 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 468
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 469 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 525
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 526 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 584
Query: 2100 TVTL 2103
++L
Sbjct: 585 VLSL 588
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 109/252 (43%), Gaps = 14/252 (5%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 243 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 300
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDA 1571
A +++ + +N ++ ++P + ++D N H K +L +++ + + D
Sbjct: 301 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 360
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 361 -TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDA 415
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
VR + L +G E F + ++ L A D+ R A L +++ G
Sbjct: 416 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 475
Query: 1692 VY-FEHILPDII 1702
+ I+P ++
Sbjct: 476 EWAHATIIPKVL 487
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 216/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 69 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 120
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 180 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R ++L + + SD + V+ A V + +
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 410
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 411 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 468 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 524
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 2100 TVTL 2103
++L
Sbjct: 584 VLSL 587
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 108/252 (42%), Gaps = 14/252 (5%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 299
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDA 1571
A +++ + +N + ++P + ++D N H K +L +++ + + D
Sbjct: 300 AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 360 -TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDA 414
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
VR + L +G E F + ++ L A D+ R A L +++ G
Sbjct: 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474
Query: 1692 VY-FEHILPDII 1702
+ I+P ++
Sbjct: 475 EWAHATIIPKVL 486
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
Length = 589
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 216/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 70 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 121
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 122 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 180
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 181 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L++P + + +WR+R + +L V K L + EA
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R ++L + + SD + V+ A V + +
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 411
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1991
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 412 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 468
Query: 1992 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 469 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 525
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 526 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 584
Query: 2100 TVTL 2103
++L
Sbjct: 585 VLSL 588
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/252 (19%), Positives = 108/252 (42%), Gaps = 14/252 (5%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 243 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT--DLVPAFQNLMKDCEAEVRA 300
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDA 1571
A +++ + +N + ++P + ++D N H K +L +++ + + D
Sbjct: 301 AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 360
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 361 -TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDA 415
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
VR + L +G E F + ++ L A D+ R A L +++ G
Sbjct: 416 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 475
Query: 1692 VY-FEHILPDII 1702
+ I+P ++
Sbjct: 476 EWAHATIIPKVL 487
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 119/544 (21%), Positives = 215/544 (39%), Gaps = 62/544 (11%)
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 63 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 114
Query: 1657 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 1711
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 115 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPX 173
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 174 VRRAAASKLGEFAKVL--ELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 1772 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830
L L+ P + + +WR+R + +L V K L + EA
Sbjct: 232 DLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEV 291
Query: 1831 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1875
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGK 351
Query: 1876 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932
T++ ++P+ + L +G +R+L + +LP+I+ L
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIV-----EL 404
Query: 1933 KDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTA-LCDSILEVRESAGLAFS 1990
+ + R + I ++A QL + F DE + ++ A L D + +RE+A
Sbjct: 405 AEDAKWRVRLAIIEYXPLLAG----QLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLK 460
Query: 1991 TLFKSAGMQ-AIDEIVPTLLHALEDDQ-----TSDTALDGLKQILSVRTTAVLPHILPKL 2044
L + G + A I+P +L D T+ ++ L ++ T H LP +
Sbjct: 461 KLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITT--KHXLPTV 518
Query: 2045 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 2099
+ P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 519 LRXAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 577
Query: 2100 TVTL 2103
++L
Sbjct: 578 VLSL 581
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 14/303 (4%)
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 1517
LV P+L + EDK+WR + + ++++ +VP + D +V++
Sbjct: 236 LVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKT--DLVPAFQNLXKDCEAEVRA 293
Query: 1518 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 1572
A +++ + +N + ++P + ++D N H K +L ++
Sbjct: 294 AASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDN 353
Query: 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 1632
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 354 TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDAK 409
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692
VR L +G E F + ++ L A D+ R A L +++ G
Sbjct: 410 WRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKE 469
Query: 1693 Y-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
+ I+P ++ R L L G + LP +L D
Sbjct: 470 WAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITT--KHXLPTVLRXAGDPVA 527
Query: 1752 SVR 1754
+VR
Sbjct: 528 NVR 530
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 1878 TLKEIMPVLMNTLIXXXXXXXXERRQV---AGRALGELVRKLGERVLPSIIPILSRGLKD 1934
++K+++P L+N L + V AG L + G +L ++ + + +
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
+ R+ + +M K Q ++ + +P+I + D L+V+E+
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 1878 TLKEIMPVLMNTLIXXXXXXXXERRQV---AGRALGELVRKLGERVLPSIIPILSRGLKD 1934
++K+++P L+N L + V AG L + G +L ++ + + +
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
+ R+ + +M K Q ++ + +P+I + D L+V+E+
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQVGS-VIKNPEIASLVPTL 1542
L + V+ P L P +
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLM 444
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 1692
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396
Query: 1693 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 515
Query: 1812 KAL 1814
L
Sbjct: 516 HHL 518
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 2233 IFLQGLISGSA---------ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283
I L+G + G + LR+ +A L L V ++ ++P PL++ +
Sbjct: 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFH 370
Query: 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXX 2343
W VK + + L I + P+LP+L I+CL D VR
Sbjct: 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430
Query: 2344 X------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 2380
T + PL+ +LL + S+ ++EA +A + + A
Sbjct: 431 VVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1976
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL----D 453
Query: 1977 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 454 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 486
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 104/247 (42%), Gaps = 41/247 (16%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
+ +D P L +++P + + S + + A V +++ + ++ +I + +
Sbjct: 166 DVLDRP-LNIMIPKFLQFFKHSSPKIRSHAVACVNQF--IISRTQALMLHIDSFIENLFA 222
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLS 1683
+ D PEVR RA+ L+ + P ++V ++L + + NV L
Sbjct: 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL- 281
Query: 1684 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-----GVQFQNYLQQV 1738
T+ + I D+ L ++LP+ + G+++ + +
Sbjct: 282 -------TLAEQPICKDV-----------------LVRHLPKLIPVLVNGMKYSDIDIIL 317
Query: 1739 LPAILDGLADENESVRDAAL-----GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
L ++G + ++++ D L A VL Y LP +LP +++ +F+ W +++
Sbjct: 318 LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKE 377
Query: 1794 SSVELLG 1800
S + +LG
Sbjct: 378 SGILVLG 384
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 373 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 432
Query: 1519 GQTALQQVGS-VIKNPEIASLVPTL 1542
L + V+ P L P +
Sbjct: 433 TCWTLSRYAHWVVSQPPDTYLKPLM 457
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 1692
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 350 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 409
Query: 1693 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 410 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 469
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 470 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 528
Query: 1812 KAL 1814
L
Sbjct: 529 HHL 531
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1976
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 411 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL----D 466
Query: 1977 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 467 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 499
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 350 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 404
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 2358
+ P+LP+L I+CL D VR T + PL+ +LL +
Sbjct: 405 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 464
Query: 2359 QVSDAGIREAILTALKGVLKHA 2380
S+ ++EA +A + + A
Sbjct: 465 LDSNKRVQEAACSAFATLEEEA 486
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
D ++D N +R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 343 DTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 397
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 398 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 457
Query: 1519 GQTALQQVGS-VIKNPEIASLVPTL 1542
L + V+ P L P +
Sbjct: 458 TCWTLSRYAHWVVSQPPDTYLKPLM 482
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 1692
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 375 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 434
Query: 1693 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 435 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 494
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 495 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 553
Query: 1812 KAL 1814
L
Sbjct: 554 HHL 556
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1976
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 436 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI----LD 491
Query: 1977 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 492 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 524
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 375 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 429
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 2358
+ P+LP+L I+CL D VR T + PL+ +LL +
Sbjct: 430 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 489
Query: 2359 QVSDAGIREAILTALKGVLKHA 2380
S+ ++EA +A + + A
Sbjct: 490 LDSNKRVQEAACSAFATLEEEA 511
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 374 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 422
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 22/243 (9%)
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLD 1558
K+V + ++L D + +VQ+ L + S +K ++ ++V TL + + +
Sbjct: 71 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISS 130
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKK-------AAQIVGNMCS---- 1605
I L+T A S + L V + + R SA K++ A I+ +M S
Sbjct: 131 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 190
Query: 1606 LVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDA 1665
L+ I + LLP+ L P VR A+G L+ G F DL+ LL
Sbjct: 191 LLVNFHPSI--LTCLLPQ----LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 244
Query: 1666 LKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
L ++S Q ++ + G Y E I+P +++ C+ +R+ + F+
Sbjct: 245 LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 304
Query: 1723 LPR 1725
R
Sbjct: 305 FVR 307
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 1448 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
++ L +Q V ++ +L K +++K+ +T+Q +L + P L+Q +P +VP +
Sbjct: 448 LTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 506
Query: 1508 LTD----THPKVQ--SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
L D ++ K+ S L + +P + +LVP ++ + DP
Sbjct: 507 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 554
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 110/277 (39%), Gaps = 28/277 (10%)
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKY 1352
DD VV +L +L + VQ CL PL+ +++ + T+V L ++ SDK
Sbjct: 65 DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-SDKE 123
Query: 1353 GERRGAAFGLAGVV-------KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
R ++ GL V+ G +++ I L +A + + AL
Sbjct: 124 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 183
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLK 1465
+ + G L ++ P +L Q + L +V L++
Sbjct: 184 MLSRQGGL----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE 239
Query: 1466 GL-----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520
L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++ +
Sbjct: 240 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR---E 296
Query: 1521 TALQQVGSVIKN------PEIASLVPTLLMGLT-DPN 1550
+Q S ++ P +++++ L LT DPN
Sbjct: 297 YCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 333
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 26/245 (10%)
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLD 1558
K+V + ++L D + +VQ+ L + S +K ++ ++V TL + + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISS 107
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKK-------AAQIVGNMCS---- 1605
I L+T A S + L V + + R SA K++ A I+ +M S
Sbjct: 108 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167
Query: 1606 -LVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 1663
LV + P I LLP+ L P VR A+G L+ G F DL+ LL
Sbjct: 168 LLV----NFHPSILTCLLPQ----LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L ++S Q ++ + G Y E I+P +++ C+ +R+ + F
Sbjct: 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279
Query: 1721 KYLPR 1725
+ R
Sbjct: 280 ESFVR 284
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 1448 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
++ L +Q V ++ +L K +++K+ +T+Q +L + P L+Q +P +VP +
Sbjct: 425 LTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483
Query: 1508 LTD----THPKVQ--SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
L D ++ K+ S L + +P + +LVP ++ + DP
Sbjct: 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q LP+++P L + L+D V+S
Sbjct: 398 ILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSI 457
Query: 1519 GQTALQQVGS-VIKNPEIASLVP---TLLMGLTDPN 1550
L + V+ P L P LL + D N
Sbjct: 458 TCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSN 493
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 1692
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 375 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIP 434
Query: 1693 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
Y ++P +I+ S ++A VR TL +Y + YL+ + +L + D N+
Sbjct: 435 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNK 494
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 495 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 553
Query: 1812 KAL 1814
L
Sbjct: 554 HHL 556
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
LP +IP L + L D A R C LS +++ L + + DS
Sbjct: 436 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKR 495
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
V+E+A AF+TL + +A E+VP L + L+
Sbjct: 496 VQEAACSAFATLEE----EACTELVPYLAYILD 524
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 375 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCX 429
Query: 2305 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 2358
P+LP+L I+CL D VR T + PL +LL +
Sbjct: 430 QGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRI 489
Query: 2359 QVSDAGIREAILTALKGVLKHA 2380
S+ ++EA +A + + A
Sbjct: 490 LDSNKRVQEAACSAFATLEEEA 511
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 374 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 422
>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|C Chain C, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|E Chain E, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|G Chain G, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 460
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 2461 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-----GPANTTVVV 2515
P + M F+ I L +S K FP + K L L L P TV++
Sbjct: 181 PHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLI 240
Query: 2516 DILASVVS--ALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPA-------LAE 2564
+S A + +S +R+ AL K K ANPS+ ++ FG + L E
Sbjct: 241 PSTKDAISNHAAYPQASLIRK-ALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKE 299
Query: 2565 CLKDGSTPVRLAAERCAVHAFQLTR 2589
+K G+T R +R + H Q R
Sbjct: 300 VIKGGTTSSRYRLDRVSEHILQQRR 324
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound
To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1996 AGMQAIDEI 2004
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1996 AGMQAIDEI 2004
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 330 YAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNE 389
Y IK VIG + G L F + NALQ+LS+ EG+YL+ +FLL + N+
Sbjct: 87 YDIK-VIGVNRGNLGF-LTDLDPDNALQQLSDVLEGEYLSE-----QRFLLETHVRRTNQ 139
Query: 390 EVKLA 394
+ +++
Sbjct: 140 QSRIS 144
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1996 AGMQAIDEI 2004
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 194 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 253
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 254 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 313
Query: 1996 AGMQAIDEI 2004
AI+++
Sbjct: 314 LPEAAINDV 322
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 253 PDWRYRDAAVMAFGCILE-GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 310
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
Length = 442
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 1242 MIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
MI +++GR N+S + + N + Y + GV+ FT +LAK LA + V+A
Sbjct: 167 MINNRYGRIINISSIVGLTGNV------GQANYSSSKAGVIGFTKSLAKELASRNITVNA 220
Query: 1301 VVDKLL--DVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA 1358
+ + D+ + SE +++ + S + +E L + SDK G G
Sbjct: 221 IAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLAC-----FLSSDKSGYINGR 275
Query: 1359 AFGLAG 1364
F + G
Sbjct: 276 VFVIDG 281
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain Trapped
In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain Trapped
In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1935
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1996 AGMQAIDEI 2004
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 2441 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499
P W R +V+ F + L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGSIL-EGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRI 435
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In
Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In
Thermus Thermophilus Hb27
Length = 217
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAG 1906
A ++ R+ + L + AL KT+VA TP+ L M VL + RQ
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM-VLSEAYVALY-------RQAED 92
Query: 1907 RALGE-------LVRKLGERVLPSIIPI-LSRGLKDPSASRRQGVCIGLSEV-MASAGKS 1957
R G+ V K ERV P P+ L RGL V L E A A
Sbjct: 93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL----------VYALLGERDKAEASLK 142
Query: 1958 QLLSFMDELIPTIRTALCDSILEV 1981
Q L+ D P IR+AL + L +
Sbjct: 143 QALALED--TPEIRSALAELYLSM 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,293,954
Number of Sequences: 62578
Number of extensions: 2473827
Number of successful extensions: 6762
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6491
Number of HSP's gapped (non-prelim): 262
length of query: 2622
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2507
effective length of database: 7,776,867
effective search space: 19496605569
effective search space used: 19496605569
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)