Query 000050
Match_columns 2622
No_of_seqs 750 out of 3872
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 7.9E-55 1.7E-59 533.1 41.0 561 1201-1767 3-565 (569)
2 KOG1824 TATA-binding protein-i 100.0 9.6E-50 2.1E-54 492.1 83.0 1023 1497-2619 45-1213(1233)
3 KOG2171 Karyopherin (importin) 100.0 1.9E-44 4.2E-49 465.3 76.7 906 1057-2031 4-1002(1075)
4 KOG2171 Karyopherin (importin) 100.0 1.2E-40 2.6E-45 430.3 87.1 863 1132-2166 6-939 (1075)
5 KOG1824 TATA-binding protein-i 100.0 1.7E-35 3.7E-40 366.6 90.2 1067 1295-2545 42-1186(1233)
6 KOG1241 Karyopherin (importin) 100.0 3E-34 6.6E-39 351.7 48.4 660 1058-1768 2-765 (859)
7 PF12074 DUF3554: Domain of un 100.0 1.8E-35 4E-40 373.2 26.8 318 346-692 1-339 (339)
8 KOG2023 Nuclear transport rece 100.0 2.4E-28 5.2E-33 293.9 48.5 751 1133-1971 16-876 (885)
9 KOG2023 Nuclear transport rece 100.0 6.7E-28 1.5E-32 290.1 51.6 768 1508-2381 22-860 (885)
10 PLN03200 cellulose synthase-in 100.0 4.7E-22 1E-26 279.3 102.2 1303 1132-2553 101-1606(2102)
11 KOG0915 Uncharacterized conser 100.0 7E-25 1.5E-29 286.6 67.7 614 1921-2589 816-1513(1702)
12 KOG1241 Karyopherin (importin) 100.0 5.7E-25 1.2E-29 270.8 61.5 728 1509-2425 11-816 (859)
13 PLN03200 cellulose synthase-in 100.0 6.4E-22 1.4E-26 277.9 97.7 1371 1133-2582 16-1594(2102)
14 COG5215 KAP95 Karyopherin (imp 100.0 1.3E-23 2.9E-28 248.6 55.1 645 1055-1746 2-732 (858)
15 KOG0915 Uncharacterized conser 99.9 5.6E-21 1.2E-25 250.6 57.6 615 1255-1954 819-1471(1702)
16 KOG0213 Splicing factor 3b, su 99.9 6.5E-20 1.4E-24 222.8 61.0 761 1508-2555 372-1152(1172)
17 KOG0213 Splicing factor 3b, su 99.9 4.8E-20 1E-24 223.9 58.4 675 1216-1993 365-1064(1172)
18 KOG1242 Protein containing ada 99.9 3E-21 6.5E-26 238.6 38.2 515 1509-2097 27-558 (569)
19 COG5215 KAP95 Karyopherin (imp 99.9 5.4E-18 1.2E-22 201.6 61.4 669 1620-2429 95-818 (858)
20 COG5181 HSH155 U2 snRNP splice 99.9 2.2E-17 4.8E-22 197.6 52.1 712 1593-2555 222-957 (975)
21 COG5181 HSH155 U2 snRNP splice 99.8 1.7E-16 3.7E-21 190.1 53.4 715 1428-2181 176-946 (975)
22 KOG0211 Protein phosphatase 2A 99.8 5E-17 1.1E-21 213.3 42.8 557 1350-1995 94-665 (759)
23 KOG0212 Uncharacterized conser 99.7 9.5E-13 2.1E-17 158.8 47.1 464 1890-2464 5-486 (675)
24 KOG0211 Protein phosphatase 2A 99.7 1.1E-13 2.4E-18 182.1 39.8 530 1252-1802 119-662 (759)
25 KOG1943 Beta-tubulin folding c 99.6 1.6E-08 3.5E-13 132.1 74.4 645 1295-2014 67-811 (1133)
26 KOG0212 Uncharacterized conser 99.6 1.5E-11 3.2E-16 148.8 39.9 419 1624-2141 5-444 (675)
27 KOG1248 Uncharacterized conser 99.5 3.7E-08 8E-13 130.7 68.8 690 1854-2586 148-898 (1176)
28 KOG1248 Uncharacterized conser 99.5 1.7E-07 3.8E-12 124.4 74.7 756 1297-2195 90-911 (1176)
29 KOG1943 Beta-tubulin folding c 99.4 2.2E-07 4.8E-12 121.9 65.6 690 1631-2459 137-882 (1133)
30 PF01602 Adaptin_N: Adaptin N 99.4 2E-09 4.3E-14 147.6 48.7 468 1379-1949 43-521 (526)
31 PF01602 Adaptin_N: Adaptin N 99.4 1E-09 2.2E-14 150.4 44.4 478 1332-1871 37-522 (526)
32 PTZ00429 beta-adaptin; Provisi 99.4 1.3E-08 2.9E-13 137.1 52.1 502 1891-2544 38-545 (746)
33 PTZ00429 beta-adaptin; Provisi 99.3 1.3E-07 2.8E-12 127.8 52.8 494 1225-1763 41-543 (746)
34 KOG1991 Nuclear transport rece 99.3 8.9E-07 1.9E-11 115.7 54.8 638 1055-1748 2-780 (1010)
35 PRK09687 putative lyase; Provi 99.2 8.8E-10 1.9E-14 133.8 25.3 253 1302-1644 25-278 (280)
36 PRK13800 putative oxidoreducta 99.2 7.3E-10 1.6E-14 157.4 27.4 273 1421-1762 622-895 (897)
37 PRK09687 putative lyase; Provi 99.2 1.1E-09 2.5E-14 132.8 22.9 252 1421-1721 24-278 (280)
38 PRK13800 putative oxidoreducta 99.2 2.4E-09 5.3E-14 152.2 29.1 274 1301-1645 622-896 (897)
39 KOG0166 Karyopherin (importin) 99.2 7E-09 1.5E-13 129.8 28.5 377 1422-1802 68-484 (514)
40 KOG0166 Karyopherin (importin) 99.1 2.5E-08 5.3E-13 125.0 27.0 374 1350-1762 78-482 (514)
41 KOG1992 Nuclear export recepto 98.9 0.00039 8.6E-09 89.6 55.6 655 1511-2287 17-779 (960)
42 KOG1992 Nuclear export recepto 98.9 0.00043 9.4E-09 89.3 55.6 300 1409-1747 223-558 (960)
43 KOG1991 Nuclear transport rece 98.8 0.0024 5.3E-08 84.8 70.2 390 2053-2481 438-871 (1010)
44 KOG1060 Vesicle coat complex A 98.8 1.1E-05 2.4E-10 102.5 37.6 491 1890-2503 40-535 (968)
45 PF10508 Proteasom_PSMB: Prote 98.8 1.5E-05 3.3E-10 106.1 41.9 302 1425-1766 43-366 (503)
46 KOG1993 Nuclear transport rece 98.8 0.002 4.4E-08 82.9 59.5 172 1591-1767 502-689 (978)
47 PF12348 CLASP_N: CLASP N term 98.8 1.6E-07 3.4E-12 113.1 19.4 200 1775-1999 7-211 (228)
48 KOG0392 SNF2 family DNA-depend 98.8 6.9E-05 1.5E-09 99.9 44.1 178 2245-2424 749-929 (1549)
49 PF12348 CLASP_N: CLASP N term 98.8 2.3E-07 4.9E-12 111.7 19.3 182 1347-1532 16-210 (228)
50 KOG1060 Vesicle coat complex A 98.7 2.7E-05 5.9E-10 99.1 36.3 412 1858-2340 50-531 (968)
51 KOG0392 SNF2 family DNA-depend 98.7 0.00054 1.2E-08 91.8 46.6 131 2054-2185 797-928 (1549)
52 KOG0891 DNA-dependent protein 98.7 0.01 2.2E-07 88.5 64.6 459 1844-2384 565-1047(2341)
53 KOG1059 Vesicle coat complex A 98.7 0.00086 1.9E-08 85.3 46.1 253 1417-1686 141-400 (877)
54 PF10508 Proteasom_PSMB: Prote 98.7 8.3E-06 1.8E-10 108.6 30.7 347 2234-2590 43-424 (503)
55 KOG1062 Vesicle coat complex A 98.7 2.3E-05 5E-10 100.5 32.7 385 2075-2494 108-574 (866)
56 KOG1020 Sister chromatid cohes 98.6 0.013 2.8E-07 81.1 60.2 154 1395-1554 793-948 (1692)
57 COG5064 SRP1 Karyopherin (impo 98.6 1.1E-06 2.4E-11 100.6 17.9 307 1457-1766 113-443 (526)
58 COG5064 SRP1 Karyopherin (impo 98.6 7.5E-07 1.6E-11 101.9 16.1 308 1338-1647 115-442 (526)
59 KOG4224 Armadillo repeat prote 98.6 5.2E-06 1.1E-10 96.2 22.3 375 1349-1766 58-446 (550)
60 KOG1240 Protein kinase contain 98.6 2.5E-06 5.4E-11 112.7 21.4 280 1473-1807 438-728 (1431)
61 KOG1822 Uncharacterized conser 98.6 0.023 5.1E-07 80.3 76.2 463 1887-2379 878-1443(2067)
62 KOG1062 Vesicle coat complex A 98.5 0.00083 1.8E-08 86.9 41.8 340 1347-1771 79-419 (866)
63 KOG1020 Sister chromatid cohes 98.5 0.022 4.7E-07 79.0 58.3 298 2250-2556 1058-1416(1692)
64 KOG4224 Armadillo repeat prote 98.5 7.9E-06 1.7E-10 94.7 21.4 342 1458-1803 85-445 (550)
65 KOG1967 DNA repair/transcripti 98.5 0.016 3.5E-07 76.5 61.4 152 2347-2499 865-1022(1030)
66 KOG2274 Predicted importin 9 [ 98.5 0.019 4.1E-07 75.7 63.3 704 1626-2422 11-782 (1005)
67 KOG1240 Protein kinase contain 98.5 1.2E-05 2.7E-10 106.4 23.7 295 1379-1729 423-729 (1431)
68 KOG1967 DNA repair/transcripti 98.5 0.023 4.9E-07 75.2 64.6 193 2111-2340 814-1022(1030)
69 COG5240 SEC21 Vesicle coat com 98.5 0.0019 4.2E-08 79.6 39.9 288 1841-2181 261-554 (898)
70 KOG4535 HEAT and armadillo rep 98.4 0.0013 2.7E-08 79.6 37.6 514 1750-2322 9-622 (728)
71 PF12755 Vac14_Fab1_bd: Vacuol 98.4 1.5E-06 3.3E-11 86.5 10.4 93 1395-1526 2-94 (97)
72 KOG2021 Nuclear mRNA export fa 98.4 0.0088 1.9E-07 76.7 44.9 256 1455-1747 437-748 (980)
73 KOG0891 DNA-dependent protein 98.4 0.053 1.1E-06 81.4 58.4 267 2067-2345 477-766 (2341)
74 PF12460 MMS19_C: RNAPII trans 98.3 0.00063 1.4E-08 89.1 35.9 225 2071-2320 186-413 (415)
75 KOG1820 Microtubule-associated 98.3 1.6E-05 3.4E-10 107.2 20.3 339 1620-2006 99-455 (815)
76 KOG0413 Uncharacterized conser 98.3 0.041 8.9E-07 72.2 51.2 134 2283-2424 942-1077(1529)
77 KOG4535 HEAT and armadillo rep 98.3 0.0012 2.6E-08 79.9 32.8 511 1857-2420 9-603 (728)
78 COG5240 SEC21 Vesicle coat com 98.3 0.011 2.3E-07 73.4 40.9 291 1572-1950 260-553 (898)
79 KOG1061 Vesicle coat complex A 98.3 0.0016 3.4E-08 84.9 35.8 430 1453-1985 44-480 (734)
80 PF12460 MMS19_C: RNAPII trans 98.3 0.0007 1.5E-08 88.7 33.7 325 1378-1745 42-414 (415)
81 KOG1059 Vesicle coat complex A 98.3 0.0085 1.8E-07 76.7 40.1 252 2220-2492 135-392 (877)
82 KOG2274 Predicted importin 9 [ 98.2 0.069 1.5E-06 70.8 68.3 251 2067-2359 523-795 (1005)
83 KOG1061 Vesicle coat complex A 98.2 0.0023 4.9E-08 83.5 34.6 436 1252-1764 47-487 (734)
84 KOG0414 Chromosome condensatio 98.1 0.13 2.9E-06 70.2 59.7 637 1888-2557 315-1075(1251)
85 KOG2062 26S proteasome regulat 98.1 0.00043 9.3E-09 88.0 24.9 277 1236-1551 399-679 (929)
86 KOG1820 Microtubule-associated 98.1 0.00011 2.5E-09 99.2 21.4 348 1419-1781 62-458 (815)
87 PF12755 Vac14_Fab1_bd: Vacuol 98.1 1.5E-05 3.3E-10 79.4 9.3 87 1474-1560 2-91 (97)
88 KOG2259 Uncharacterized conser 98.1 0.00015 3.3E-09 90.9 19.8 270 1701-1998 203-515 (823)
89 KOG1077 Vesicle coat complex A 98.1 0.014 3.1E-07 74.3 36.5 458 1881-2416 107-583 (938)
90 KOG0414 Chromosome condensatio 98.0 0.2 4.2E-06 68.7 62.2 147 2284-2441 935-1083(1251)
91 COG5656 SXM1 Importin, protein 98.0 0.14 3.1E-06 66.2 46.3 342 1357-1703 389-773 (970)
92 KOG1822 Uncharacterized conser 98.0 0.3 6.6E-06 69.9 82.0 192 1337-1530 51-250 (2067)
93 KOG2062 26S proteasome regulat 98.0 0.16 3.5E-06 65.8 50.1 285 1635-1982 395-682 (929)
94 KOG2259 Uncharacterized conser 97.9 0.0031 6.8E-08 79.7 27.0 245 1738-2016 199-459 (823)
95 KOG1077 Vesicle coat complex A 97.9 0.066 1.4E-06 68.6 38.4 351 1348-1741 84-449 (938)
96 PF05804 KAP: Kinesin-associat 97.9 0.014 3E-07 79.1 35.1 371 1381-1766 253-649 (708)
97 KOG1078 Vesicle coat complex C 97.9 0.039 8.4E-07 71.9 35.9 297 2226-2552 242-539 (865)
98 KOG2956 CLIP-associating prote 97.9 0.00079 1.7E-08 82.2 19.9 198 1336-1537 285-486 (516)
99 KOG2032 Uncharacterized conser 97.8 0.01 2.3E-07 73.4 29.3 140 1844-1983 258-405 (533)
100 TIGR02270 conserved hypothetic 97.8 0.0022 4.7E-08 82.1 24.5 242 1338-1648 55-296 (410)
101 COG1413 FOG: HEAT repeat [Ener 97.8 0.0018 3.9E-08 83.0 24.4 235 1351-1648 56-304 (335)
102 TIGR02270 conserved hypothetic 97.8 0.0018 4E-08 82.8 23.2 239 1379-1685 55-294 (410)
103 PF08623 TIP120: TATA-binding 97.8 6.9E-05 1.5E-09 81.9 8.6 119 2478-2602 33-164 (169)
104 KOG4413 26S proteasome regulat 97.8 0.033 7.3E-07 64.7 29.9 252 1904-2183 62-334 (524)
105 COG1413 FOG: HEAT repeat [Ener 97.7 0.0052 1.1E-07 78.8 26.5 201 1420-1670 43-257 (335)
106 KOG1078 Vesicle coat complex C 97.7 0.15 3.2E-06 66.8 37.5 314 1382-1729 68-387 (865)
107 COG5096 Vesicle coat complex, 97.7 0.38 8.2E-06 65.0 42.7 166 1467-1649 28-196 (757)
108 PF13513 HEAT_EZ: HEAT-like re 97.7 5.6E-05 1.2E-09 67.7 4.7 55 1472-1526 1-55 (55)
109 KOG1058 Vesicle coat complex C 97.6 0.086 1.9E-06 68.2 33.7 93 1855-1952 370-463 (948)
110 COG5096 Vesicle coat complex, 97.6 0.36 7.8E-06 65.2 40.9 104 1883-1994 53-156 (757)
111 KOG2032 Uncharacterized conser 97.6 0.0084 1.8E-07 74.2 23.7 232 1296-1528 254-531 (533)
112 KOG4653 Uncharacterized conser 97.4 0.0093 2E-07 78.0 22.0 220 1698-1950 729-962 (982)
113 KOG1058 Vesicle coat complex C 97.4 0.0075 1.6E-07 77.4 20.7 307 2075-2423 100-428 (948)
114 KOG2956 CLIP-associating prote 97.4 0.0073 1.6E-07 74.2 19.0 200 2233-2434 290-491 (516)
115 PF05804 KAP: Kinesin-associat 97.3 1.2 2.6E-05 61.0 40.4 153 1473-1670 264-424 (708)
116 PF12717 Cnd1: non-SMC mitotic 97.3 0.0073 1.6E-07 69.1 17.3 110 2242-2360 1-112 (178)
117 PF10274 ParcG: Parkin co-regu 97.1 0.002 4.2E-08 71.3 9.8 92 2227-2319 36-130 (183)
118 KOG0168 Putative ubiquitin fus 97.1 0.23 5E-06 65.4 29.2 195 1337-1531 167-367 (1051)
119 KOG4653 Uncharacterized conser 97.1 0.032 7E-07 73.2 21.7 223 1928-2181 732-963 (982)
120 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00048 1E-08 61.7 3.9 55 1393-1447 1-55 (55)
121 KOG2022 Nuclear transport rece 97.1 2.2 4.9E-05 57.2 62.1 265 1436-1747 440-756 (982)
122 cd00020 ARM Armadillo/beta-cat 97.1 0.0032 6.9E-08 67.0 10.7 108 1420-1527 7-119 (120)
123 PF05004 IFRD: Interferon-rela 97.0 0.031 6.7E-07 69.5 20.2 191 2231-2422 45-259 (309)
124 KOG0168 Putative ubiquitin fus 97.0 0.3 6.4E-06 64.5 28.8 390 2115-2555 170-639 (1051)
125 PF13646 HEAT_2: HEAT repeats; 97.0 0.0022 4.8E-08 64.1 8.2 86 1422-1524 1-88 (88)
126 KOG0567 HEAT repeat-containing 97.0 0.045 9.8E-07 62.9 18.6 244 1422-1731 38-286 (289)
127 KOG0946 ER-Golgi vesicle-tethe 97.0 2.6 5.7E-05 55.8 41.9 360 1335-1721 20-433 (970)
128 PF05918 API5: Apoptosis inhib 96.9 0.22 4.9E-06 65.2 27.3 291 2241-2549 34-349 (556)
129 PF05004 IFRD: Interferon-rela 96.9 0.042 9.1E-07 68.4 20.2 189 1462-1651 47-260 (309)
130 cd00020 ARM Armadillo/beta-cat 96.9 0.0052 1.1E-07 65.4 10.7 112 1458-1604 7-119 (120)
131 KOG0567 HEAT repeat-containing 96.8 0.093 2E-06 60.5 19.5 237 1887-2181 38-279 (289)
132 PF12717 Cnd1: non-SMC mitotic 96.8 0.029 6.4E-07 64.2 16.1 110 1857-1970 1-110 (178)
133 PF04826 Arm_2: Armadillo-like 96.8 0.056 1.2E-06 64.8 18.9 147 1379-1529 13-164 (254)
134 COG5218 YCG1 Chromosome conden 96.8 2.9 6.3E-05 53.3 43.7 175 1573-1763 88-263 (885)
135 KOG2025 Chromosome condensatio 96.7 3.6 7.7E-05 53.9 41.5 228 1753-2029 58-290 (892)
136 PF14500 MMS19_N: Dos2-interac 96.7 0.22 4.9E-06 60.2 23.3 238 2117-2399 4-258 (262)
137 PF13646 HEAT_2: HEAT repeats; 96.7 0.0085 1.8E-07 59.8 9.5 87 1578-1683 1-88 (88)
138 KOG4413 26S proteasome regulat 96.7 1.4 3.1E-05 51.9 27.8 169 1358-1530 63-245 (524)
139 KOG2933 Uncharacterized conser 96.7 0.019 4.1E-07 67.4 13.0 178 1459-1641 89-270 (334)
140 COG5116 RPN2 26S proteasome re 96.7 0.051 1.1E-06 67.5 17.2 225 1299-1549 445-674 (926)
141 KOG1525 Sister chromatid cohes 96.5 9 0.00019 55.7 52.8 173 2107-2282 254-435 (1266)
142 KOG1293 Proteins containing ar 96.4 5.7 0.00012 52.1 36.7 425 1393-1878 67-538 (678)
143 KOG4524 Uncharacterized conser 96.4 7.4 0.00016 53.3 38.7 84 1851-1934 810-900 (1014)
144 KOG1993 Nuclear transport rece 96.3 6.6 0.00014 52.3 59.9 303 1857-2164 410-751 (978)
145 PF12719 Cnd3: Nuclear condens 96.3 0.37 8.1E-06 60.3 23.0 128 2294-2421 5-144 (298)
146 KOG0413 Uncharacterized conser 96.2 7.9 0.00017 52.3 56.6 138 2053-2196 948-1088(1529)
147 KOG2025 Chromosome condensatio 96.2 7.1 0.00015 51.4 45.6 206 1415-1645 80-291 (892)
148 COG5116 RPN2 26S proteasome re 96.0 0.24 5.1E-06 62.0 17.9 161 1336-1513 514-676 (926)
149 PF13001 Ecm29: Proteasome sta 96.0 4.6 0.0001 54.3 32.2 97 1611-1707 15-113 (501)
150 PF14500 MMS19_N: Dos2-interac 96.0 0.99 2.1E-05 54.7 23.4 236 1705-1972 8-257 (262)
151 PF08506 Cse1: Cse1; InterPro 95.9 0.31 6.8E-06 62.1 19.4 130 1349-1481 222-369 (370)
152 PF05918 API5: Apoptosis inhib 95.9 2.8 6E-05 55.5 27.9 128 1672-1805 36-163 (556)
153 PF02985 HEAT: HEAT repeat; I 95.8 0.013 2.8E-07 45.3 4.0 30 1500-1529 1-30 (31)
154 COG5218 YCG1 Chromosome conden 95.7 9.4 0.0002 49.0 45.9 212 1877-2098 41-261 (885)
155 KOG1293 Proteins containing ar 95.7 9.8 0.00021 50.1 30.9 110 2073-2182 418-533 (678)
156 PF04826 Arm_2: Armadillo-like 95.7 0.29 6.4E-06 58.8 17.0 193 1337-1533 12-210 (254)
157 PF13001 Ecm29: Proteasome sta 95.6 9.3 0.0002 51.5 32.4 393 1490-1918 14-447 (501)
158 PF12719 Cnd3: Nuclear condens 95.5 0.62 1.3E-05 58.4 19.8 151 2394-2548 30-188 (298)
159 KOG1525 Sister chromatid cohes 95.5 23 0.0005 51.7 53.0 236 1396-1636 198-441 (1266)
160 PF03378 CAS_CSE1: CAS/CSE pro 95.5 2.6 5.6E-05 55.2 25.7 298 1611-1976 18-350 (435)
161 PLN03076 ARF guanine nucleotid 95.4 4.5 9.8E-05 61.0 30.6 299 2288-2587 1108-1490(1780)
162 PF08506 Cse1: Cse1; InterPro 95.4 0.38 8.2E-06 61.3 17.3 128 1857-1989 224-370 (370)
163 KOG1243 Protein kinase [Genera 95.3 0.22 4.7E-06 65.2 14.6 188 1573-1767 327-516 (690)
164 KOG1243 Protein kinase [Genera 95.2 0.19 4E-06 65.9 13.7 243 1672-1950 268-513 (690)
165 PF01347 Vitellogenin_N: Lipop 95.2 0.95 2.1E-05 63.5 22.3 236 1301-1561 326-585 (618)
166 PLN03076 ARF guanine nucleotid 95.1 6.1 0.00013 59.7 30.1 328 1861-2189 1109-1496(1780)
167 PF13251 DUF4042: Domain of un 95.1 0.2 4.3E-06 56.5 11.8 126 1505-1650 46-176 (182)
168 PF08167 RIX1: rRNA processing 95.0 0.5 1.1E-05 53.2 14.9 143 2107-2322 20-164 (165)
169 PF10274 ParcG: Parkin co-regu 94.9 0.27 5.8E-06 54.9 12.2 116 1885-2000 38-170 (183)
170 PF13251 DUF4042: Domain of un 94.9 0.24 5.1E-06 55.9 11.9 136 1859-1994 1-174 (182)
171 cd00256 VATPase_H VATPase_H, r 94.9 3.2 7E-05 53.5 23.4 68 1885-1952 353-425 (429)
172 KOG2160 Armadillo/beta-catenin 94.9 0.38 8.3E-06 58.6 14.4 176 2284-2459 95-283 (342)
173 KOG1949 Uncharacterized conser 94.9 2.2 4.7E-05 55.4 21.2 143 1848-1993 178-330 (1005)
174 PF03378 CAS_CSE1: CAS/CSE pro 94.9 1.9 4.2E-05 56.3 21.8 290 1876-2165 17-351 (435)
175 PF02985 HEAT: HEAT repeat; I 94.7 0.053 1.1E-06 41.9 4.3 30 1620-1649 1-30 (31)
176 PF11864 DUF3384: Domain of un 94.6 24 0.00051 47.3 33.4 287 1352-1652 4-335 (464)
177 PF12054 DUF3535: Domain of un 94.5 1.7 3.7E-05 57.0 20.2 95 1434-1528 101-208 (441)
178 PF12231 Rif1_N: Rap1-interact 94.5 17 0.00036 47.1 29.0 75 2226-2300 271-351 (372)
179 PF12231 Rif1_N: Rap1-interact 94.5 22 0.00047 46.1 32.3 242 1613-1873 33-303 (372)
180 KOG1949 Uncharacterized conser 94.3 0.9 1.9E-05 58.7 16.1 151 1575-1726 173-332 (1005)
181 PF11865 DUF3385: Domain of un 94.1 0.49 1.1E-05 52.8 12.0 107 2312-2419 9-156 (160)
182 KOG1851 Uncharacterized conser 94.0 45 0.00097 48.6 32.1 171 1356-1530 1505-1680(1710)
183 KOG2081 Nuclear transport regu 93.9 29 0.00062 45.3 39.8 147 1844-1997 291-460 (559)
184 KOG1517 Guanine nucleotide bin 93.8 0.77 1.7E-05 62.1 14.5 218 2328-2547 485-734 (1387)
185 PF04118 Dopey_N: Dopey, N-ter 93.7 8.7 0.00019 47.6 22.9 218 1338-1562 11-251 (307)
186 COG5234 CIN1 Beta-tubulin fold 93.7 17 0.00038 47.7 25.4 169 1631-1803 208-415 (993)
187 KOG2933 Uncharacterized conser 93.7 1.1 2.4E-05 53.3 14.1 138 1387-1531 97-237 (334)
188 PF12054 DUF3535: Domain of un 93.7 1.7 3.6E-05 57.1 17.7 77 2090-2166 103-181 (441)
189 smart00638 LPD_N Lipoprotein N 93.6 4.8 0.0001 55.8 23.3 170 1378-1561 357-541 (574)
190 KOG0946 ER-Golgi vesicle-tethe 93.3 42 0.00091 45.3 41.4 153 1753-1917 39-198 (970)
191 KOG2081 Nuclear transport regu 93.2 37 0.00079 44.4 37.6 312 1616-1952 150-495 (559)
192 KOG2021 Nuclear mRNA export fa 93.1 42 0.00092 44.9 61.6 344 1589-1975 206-586 (980)
193 PF11865 DUF3385: Domain of un 93.1 0.62 1.3E-05 52.0 10.7 143 1617-1765 8-156 (160)
194 PF08167 RIX1: rRNA processing 92.7 2.6 5.6E-05 47.6 15.1 138 2230-2399 26-163 (165)
195 COG5095 TAF6 Transcription ini 92.6 1.9 4.1E-05 50.3 13.6 111 2248-2360 255-383 (450)
196 PF11864 DUF3384: Domain of un 92.5 51 0.0011 44.2 38.7 425 1858-2376 4-464 (464)
197 KOG1517 Guanine nucleotide bin 92.4 3.2 6.9E-05 56.6 17.2 152 1845-1996 513-673 (1387)
198 PF01347 Vitellogenin_N: Lipop 92.1 2.7 5.9E-05 58.9 17.8 137 2444-2601 450-601 (618)
199 PF04118 Dopey_N: Dopey, N-ter 92.0 9.1 0.0002 47.5 19.7 196 1657-1872 54-253 (307)
200 KOG4500 Rho/Rac GTPase guanine 92.0 41 0.00089 42.1 29.4 113 2430-2545 316-431 (604)
201 cd00256 VATPase_H VATPase_H, r 91.8 51 0.0011 42.9 27.7 288 2237-2545 109-425 (429)
202 KOG1222 Kinesin associated pro 91.8 44 0.00096 42.1 28.8 352 1398-1765 282-662 (791)
203 cd08050 TAF6 TATA Binding Prot 91.8 1.8 3.8E-05 55.0 13.8 75 1611-1685 250-338 (343)
204 KOG1048 Neural adherens juncti 91.5 22 0.00047 48.3 23.3 111 2073-2183 232-350 (717)
205 KOG2137 Protein kinase [Signal 91.4 4.6 0.0001 53.7 16.9 167 1576-1746 349-517 (700)
206 KOG2549 Transcription initiati 91.3 4.7 0.0001 51.8 16.3 112 1864-1975 267-393 (576)
207 PF12530 DUF3730: Protein of u 91.2 38 0.00082 40.8 23.5 207 2275-2494 4-225 (234)
208 COG5095 TAF6 Transcription ini 91.1 4.1 8.8E-05 47.7 14.1 149 1335-1487 195-359 (450)
209 KOG1851 Uncharacterized conser 90.8 1.1E+02 0.0024 44.9 33.0 148 1618-1767 1525-1679(1710)
210 KOG2137 Protein kinase [Signal 90.6 11 0.00024 50.4 19.3 167 1337-1508 349-517 (700)
211 smart00638 LPD_N Lipoprotein N 90.6 8.4 0.00018 53.4 20.0 173 2411-2601 376-557 (574)
212 KOG1837 Uncharacterized conser 90.5 56 0.0012 47.8 26.6 66 2514-2579 1539-1604(1621)
213 PF05536 Neurochondrin: Neuroc 90.0 91 0.002 42.5 30.7 162 2227-2424 96-265 (543)
214 PF08623 TIP120: TATA-binding 89.9 2.3 5E-05 47.3 10.7 116 1414-1530 3-149 (169)
215 KOG2160 Armadillo/beta-catenin 89.8 13 0.00029 45.8 17.8 182 1587-1770 94-286 (342)
216 PF10363 DUF2435: Protein of u 89.8 1.8 4E-05 43.1 8.8 82 2113-2195 4-85 (92)
217 PF12074 DUF3554: Domain of un 89.7 17 0.00036 46.7 20.2 96 1884-1979 21-121 (339)
218 PF10521 DUF2454: Protein of u 88.7 7 0.00015 48.5 15.1 151 2251-2403 98-277 (282)
219 cd08050 TAF6 TATA Binding Prot 88.7 6.1 0.00013 50.3 14.8 115 2225-2340 206-338 (343)
220 PF10363 DUF2435: Protein of u 88.3 3.3 7.1E-05 41.4 9.5 84 2350-2435 4-87 (92)
221 KOG1048 Neural adherens juncti 87.7 37 0.00081 46.1 21.2 150 1378-1528 518-684 (717)
222 PF08064 UME: UME (NUC010) dom 87.5 4.9 0.00011 41.6 10.6 86 1378-1465 11-99 (107)
223 KOG3961 Uncharacterized conser 87.1 1.2 2.6E-05 49.7 6.1 90 2227-2318 112-204 (262)
224 KOG1837 Uncharacterized conser 86.7 2E+02 0.0044 42.5 34.6 67 2109-2175 1538-1604(1621)
225 KOG2122 Beta-catenin-binding p 86.5 78 0.0017 45.8 23.2 73 2515-2588 529-603 (2195)
226 PF10521 DUF2454: Protein of u 86.5 11 0.00024 46.7 15.1 142 1609-1750 109-278 (282)
227 PF01603 B56: Protein phosphat 86.4 23 0.0005 46.4 18.5 230 2349-2589 133-373 (409)
228 KOG0803 Predicted E3 ubiquitin 86.0 25 0.00053 51.6 19.5 108 1883-1991 39-150 (1312)
229 PF08064 UME: UME (NUC010) dom 85.9 9.5 0.00021 39.5 11.6 76 1897-1974 27-105 (107)
230 PF01603 B56: Protein phosphat 85.2 17 0.00036 47.7 16.4 110 2231-2345 257-373 (409)
231 PF12530 DUF3730: Protein of u 83.9 1.1E+02 0.0023 36.9 21.7 49 1754-1803 101-150 (234)
232 KOG2549 Transcription initiati 83.7 19 0.00041 46.7 14.9 168 2230-2403 208-395 (576)
233 PF05536 Neurochondrin: Neuroc 83.6 1.9E+02 0.0041 39.5 38.1 189 1394-1653 72-266 (543)
234 KOG2149 Uncharacterized conser 82.8 18 0.00039 45.4 14.0 124 1849-1973 63-190 (393)
235 KOG2973 Uncharacterized conser 82.8 57 0.0012 39.5 17.2 101 1503-1605 7-111 (353)
236 smart00802 UME Domain in UVSB 82.5 12 0.00026 38.5 10.5 84 1378-1463 11-97 (107)
237 KOG4199 Uncharacterized conser 82.2 1.3E+02 0.0029 36.8 26.0 151 2393-2584 285-442 (461)
238 KOG1848 Uncharacterized conser 81.9 52 0.0011 47.2 19.0 217 1310-1528 852-1132(1610)
239 PF14664 RICTOR_N: Rapamycin-i 81.6 1.3E+02 0.0028 38.9 21.8 231 2349-2590 25-273 (371)
240 KOG2149 Uncharacterized conser 81.5 13 0.00029 46.5 12.2 113 1889-2001 62-177 (393)
241 KOG0803 Predicted E3 ubiquitin 81.3 1.1E+02 0.0023 45.4 22.6 110 2073-2182 40-153 (1312)
242 KOG2213 Apoptosis inhibitor 5/ 80.3 1.7E+02 0.0037 36.8 26.8 270 2116-2423 29-317 (460)
243 COG5657 CSE1 CAS/CSE protein i 80.0 2.7E+02 0.0059 39.0 39.4 106 1062-1175 9-131 (947)
244 PF00514 Arm: Armadillo/beta-c 79.5 2.9 6.3E-05 34.7 4.1 30 1498-1527 11-40 (41)
245 KOG4524 Uncharacterized conser 79.3 2.9E+02 0.0064 38.9 50.0 281 2053-2345 568-879 (1014)
246 smart00802 UME Domain in UVSB 77.6 35 0.00076 35.3 12.0 92 1880-1973 6-104 (107)
247 PF14225 MOR2-PAG1_C: Cell mor 77.5 99 0.0021 37.7 17.9 162 2000-2165 61-240 (262)
248 COG5098 Chromosome condensatio 77.3 2.7E+02 0.0058 37.4 62.4 128 2284-2420 908-1037(1128)
249 COG5656 SXM1 Importin, protein 76.8 2.9E+02 0.0064 37.6 59.9 354 1638-2013 389-776 (970)
250 PF08161 NUC173: NUC173 domain 75.7 18 0.00038 42.0 10.5 68 1591-1660 15-82 (198)
251 PF14225 MOR2-PAG1_C: Cell mor 74.8 2.1E+02 0.0046 35.0 21.7 168 1573-1749 61-240 (262)
252 PF11698 V-ATPase_H_C: V-ATPas 73.1 12 0.00026 39.1 7.3 58 1936-1994 57-115 (119)
253 cd03568 VHS_STAM VHS domain fa 72.9 46 0.001 36.5 12.3 104 2095-2200 22-128 (144)
254 KOG2213 Apoptosis inhibitor 5/ 72.2 2.7E+02 0.0059 35.1 21.3 32 1736-1767 60-91 (460)
255 cd03568 VHS_STAM VHS domain fa 71.8 45 0.00098 36.6 11.9 74 1378-1452 37-113 (144)
256 KOG2973 Uncharacterized conser 71.6 2.5E+02 0.0054 34.4 19.5 101 1700-1802 7-109 (353)
257 PF03224 V-ATPase_H_N: V-ATPas 71.6 85 0.0018 39.7 16.3 149 1301-1452 106-272 (312)
258 PF11229 DUF3028: Protein of u 70.5 3.4E+02 0.0074 35.5 22.0 253 2054-2341 18-305 (589)
259 PF08713 DNA_alkylation: DNA a 69.2 53 0.0012 38.8 13.1 145 2390-2557 50-196 (213)
260 KOG3961 Uncharacterized conser 69.1 20 0.00044 40.5 8.3 85 1888-1972 117-206 (262)
261 KOG1877 Putative transmembrane 68.7 81 0.0018 43.7 15.4 171 1842-2014 15-204 (819)
262 PF08161 NUC173: NUC173 domain 67.9 73 0.0016 37.1 13.1 70 1396-1465 17-86 (198)
263 cd03572 ENTH_epsin_related ENT 67.8 16 0.00034 38.6 6.9 74 2513-2586 35-119 (122)
264 KOG2759 Vacuolar H+-ATPase V1 66.7 3.7E+02 0.008 34.5 20.2 70 2472-2545 366-438 (442)
265 PF08389 Xpo1: Exportin 1-like 66.4 61 0.0013 35.6 12.1 122 1902-2024 5-147 (148)
266 COG5098 Chromosome condensatio 64.7 4.9E+02 0.011 35.2 66.8 102 2231-2342 935-1037(1128)
267 PF08767 CRM1_C: CRM1 C termin 64.4 2.7E+02 0.0058 35.3 18.4 121 1858-1978 90-227 (319)
268 KOG2022 Nuclear transport rece 64.1 5.8E+02 0.013 35.8 74.1 277 2224-2503 544-869 (982)
269 PF12830 Nipped-B_C: Sister ch 63.9 43 0.00094 38.7 10.4 79 2470-2555 6-84 (187)
270 PF11698 V-ATPase_H_C: V-ATPas 63.7 25 0.00054 36.8 7.3 67 2313-2379 43-116 (119)
271 PF03224 V-ATPase_H_N: V-ATPas 63.1 1.6E+02 0.0034 37.3 16.3 100 1588-1687 69-179 (312)
272 PF08389 Xpo1: Exportin 1-like 62.9 88 0.0019 34.3 12.6 123 1354-1482 4-148 (148)
273 cd03567 VHS_GGA VHS domain fam 62.5 1E+02 0.0022 33.7 12.0 73 1378-1451 38-118 (139)
274 PF08767 CRM1_C: CRM1 C termin 62.5 4.2E+02 0.0091 33.6 22.0 166 2090-2286 43-229 (319)
275 cd03569 VHS_Hrs_Vps27p VHS dom 62.4 1.1E+02 0.0023 33.7 12.5 75 1377-1452 40-117 (142)
276 COG5234 CIN1 Beta-tubulin fold 61.9 5.5E+02 0.012 34.8 25.6 220 1298-1528 244-491 (993)
277 PF00790 VHS: VHS domain; Int 61.7 72 0.0016 34.9 11.1 90 1358-1451 25-120 (140)
278 PF14664 RICTOR_N: Rapamycin-i 61.4 4.7E+02 0.01 33.9 26.8 99 1852-1952 34-137 (371)
279 PF04388 Hamartin: Hamartin pr 61.0 67 0.0015 44.8 13.2 156 2154-2322 5-161 (668)
280 KOG2122 Beta-catenin-binding p 60.9 8.2E+02 0.018 36.5 24.8 210 1555-1768 370-603 (2195)
281 PF14868 DUF4487: Domain of un 60.0 6E+02 0.013 34.7 26.3 86 1910-1995 466-553 (559)
282 cd03561 VHS VHS domain family; 59.9 1E+02 0.0023 33.4 11.9 74 1378-1452 37-115 (133)
283 PF12765 Cohesin_HEAT: HEAT re 59.7 12 0.00026 31.3 3.5 40 1482-1523 3-42 (42)
284 cd07064 AlkD_like_1 A new stru 59.3 2.4E+02 0.0052 33.3 15.6 145 2391-2557 46-191 (208)
285 cd00197 VHS_ENTH_ANTH VHS, ENT 58.3 71 0.0015 33.6 10.1 99 1343-1445 5-111 (115)
286 PF09324 DUF1981: Domain of un 58.0 27 0.00059 34.6 6.3 69 2270-2338 16-84 (86)
287 PF14868 DUF4487: Domain of un 57.4 6.6E+02 0.014 34.3 24.9 87 1565-1651 468-555 (559)
288 KOG2005 26S proteasome regulat 56.9 2.9E+02 0.0062 37.2 16.3 323 1341-1689 418-745 (878)
289 smart00288 VHS Domain present 56.6 1E+02 0.0022 33.4 11.1 73 1378-1451 37-113 (133)
290 PF07571 DUF1546: Protein of u 56.5 38 0.00082 34.0 7.1 57 2284-2340 18-76 (92)
291 KOG3687 Tuberin - Rap/ran-GTPa 55.7 3.6E+02 0.0078 37.7 17.2 75 1192-1266 445-523 (1697)
292 cd03569 VHS_Hrs_Vps27p VHS dom 55.6 1.6E+02 0.0035 32.3 12.4 81 2107-2187 36-119 (142)
293 PF12830 Nipped-B_C: Sister ch 55.4 1.4E+02 0.003 34.6 12.6 72 1884-1956 7-78 (187)
294 cd03572 ENTH_epsin_related ENT 55.2 95 0.002 32.9 9.9 46 1692-1737 34-79 (122)
295 KOG4199 Uncharacterized conser 55.1 5E+02 0.011 32.2 23.6 150 1380-1529 285-445 (461)
296 PF07539 DRIM: Down-regulated 54.3 62 0.0014 35.4 8.9 81 1499-1585 17-97 (141)
297 cd03565 VHS_Tom1 VHS domain fa 54.0 1.8E+02 0.004 31.9 12.5 75 1377-1451 37-117 (141)
298 PF00790 VHS: VHS domain; Int 53.7 1.2E+02 0.0027 33.1 11.3 93 1905-1998 25-122 (140)
299 PF08569 Mo25: Mo25-like; Int 53.7 5.8E+02 0.013 32.5 23.1 190 1378-1605 76-283 (335)
300 KOG0889 Histone acetyltransfer 53.6 1.5E+03 0.033 37.4 73.6 1054 1421-2616 985-2139(3550)
301 KOG0890 Protein kinase of the 53.5 1.2E+03 0.027 36.8 23.7 174 2241-2424 933-1117(2382)
302 smart00288 VHS Domain present 51.5 1.3E+02 0.0028 32.6 10.9 88 2226-2316 34-124 (133)
303 PF14228 MOR2-PAG1_mid: Cell m 51.3 1.1E+03 0.024 35.1 24.9 68 2430-2500 504-571 (1120)
304 PF12726 SEN1_N: SEN1 N termin 49.8 1E+03 0.022 34.2 37.0 112 2069-2184 436-555 (727)
305 PF00514 Arm: Armadillo/beta-c 47.4 32 0.0007 28.5 4.3 29 1620-1648 13-41 (41)
306 smart00185 ARM Armadillo/beta- 47.1 24 0.00052 28.9 3.5 29 1499-1527 12-40 (41)
307 KOG2011 Sister chromatid cohes 47.0 1.1E+03 0.024 34.5 20.7 72 1456-1529 280-356 (1048)
308 cd06561 AlkD_like A new struct 46.9 5.2E+02 0.011 30.0 17.2 79 2475-2561 108-186 (197)
309 PF07571 DUF1546: Protein of u 46.7 48 0.0011 33.3 6.1 55 1896-1950 17-76 (92)
310 PF12333 Ipi1_N: Rix1 complex 46.6 1.2E+02 0.0026 31.2 9.0 58 282-339 5-65 (102)
311 cd03561 VHS VHS domain family; 42.7 3.3E+02 0.0071 29.5 12.3 92 1906-1998 21-116 (133)
312 PF11919 DUF3437: Domain of un 42.7 34 0.00073 34.1 4.2 58 1473-1531 4-61 (90)
313 PF12765 Cohesin_HEAT: HEAT re 42.4 44 0.00096 28.1 4.2 39 2296-2336 3-41 (42)
314 cd03567 VHS_GGA VHS domain fam 42.4 2E+02 0.0044 31.4 10.4 79 2107-2185 33-119 (139)
315 PF08713 DNA_alkylation: DNA a 42.1 2.1E+02 0.0045 33.8 11.9 69 1421-1492 121-189 (213)
316 PF11701 UNC45-central: Myosin 41.2 1.1E+02 0.0025 34.1 8.7 115 1432-1546 17-137 (157)
317 KOG1848 Uncharacterized conser 40.3 6.8E+02 0.015 37.0 17.0 117 2469-2585 994-1131(1610)
318 KOG1877 Putative transmembrane 39.5 3.3E+02 0.0072 38.1 13.9 81 1467-1547 65-150 (819)
319 PF11701 UNC45-central: Myosin 39.3 1.1E+02 0.0025 34.2 8.3 128 1857-1990 18-155 (157)
320 COG5657 CSE1 CAS/CSE protein i 39.0 1E+03 0.022 33.8 18.0 136 2322-2461 13-155 (947)
321 KOG1789 Endocytosis protein RM 38.9 1.1E+03 0.025 33.6 17.9 146 2288-2435 1741-1903(2235)
322 PF04388 Hamartin: Hamartin pr 38.9 3.3E+02 0.0071 38.3 14.3 84 1378-1465 70-155 (668)
323 KOG2199 Signal transducing ada 36.4 2.7E+02 0.0059 35.0 11.1 105 2094-2200 29-136 (462)
324 KOG2759 Vacuolar H+-ATPase V1 36.3 1.1E+03 0.023 30.6 26.6 67 2313-2379 366-439 (442)
325 PF12333 Ipi1_N: Rix1 complex 35.8 1.1E+02 0.0024 31.5 6.8 59 1611-1669 3-65 (102)
326 KOG0889 Histone acetyltransfer 35.8 2.7E+03 0.058 35.1 80.2 1109 1431-2606 18-1366(3550)
327 PF12612 TFCD_C: Tubulin foldi 34.7 3.5E+02 0.0076 31.5 11.8 127 1416-1548 3-138 (193)
328 KOG2011 Sister chromatid cohes 33.2 1.8E+03 0.04 32.4 23.0 134 2400-2541 296-431 (1048)
329 PF07539 DRIM: Down-regulated 32.6 2.2E+02 0.0047 31.2 8.8 81 2312-2400 16-97 (141)
330 cd03565 VHS_Tom1 VHS domain fa 32.4 5.6E+02 0.012 28.1 12.1 91 2094-2186 22-119 (141)
331 PF12726 SEN1_N: SEN1 N termin 32.2 1.7E+03 0.038 31.8 34.8 114 2469-2586 438-553 (727)
332 KOG2199 Signal transducing ada 31.5 2.8E+02 0.0061 34.9 10.2 91 1455-1545 42-135 (462)
333 KOG3915 Transcription regulato 31.3 11 0.00025 46.5 -1.2 18 842-859 561-578 (641)
334 PF08146 BP28CT: BP28CT (NUC21 30.7 3.4E+02 0.0074 30.3 10.2 74 2090-2163 37-118 (153)
335 PF09324 DUF1981: Domain of un 29.6 2.5E+02 0.0054 27.9 7.9 68 1843-1910 16-84 (86)
336 PF12397 U3snoRNP10: U3 small 27.5 2.7E+02 0.0059 29.5 8.6 74 2513-2589 3-77 (121)
337 COG5537 IRR1 Cohesin [Cell div 27.2 1.7E+03 0.037 30.2 21.5 64 1852-1915 322-387 (740)
338 PF14222 MOR2-PAG1_N: Cell mor 26.9 1.8E+03 0.039 30.4 21.6 210 2366-2585 9-248 (552)
339 KOG1823 DRIM (Down-regulated i 26.4 2.5E+03 0.055 31.9 54.4 51 1882-1932 561-611 (1364)
340 PF03130 HEAT_PBS: PBS lyase H 26.1 38 0.00083 25.3 1.2 25 1515-1546 1-25 (27)
341 cd06561 AlkD_like A new struct 26.0 1.1E+03 0.023 27.3 16.6 65 1381-1451 108-172 (197)
342 cd07064 AlkD_like_1 A new stru 25.8 1.1E+03 0.023 27.9 13.8 106 1380-1496 82-188 (208)
343 cd00197 VHS_ENTH_ANTH VHS, ENT 25.3 4.6E+02 0.01 27.4 9.8 45 1693-1737 34-78 (115)
344 KOG3723 PH domain protein Melt 25.2 1.7E+03 0.038 29.6 16.3 74 2292-2370 182-258 (851)
345 KOG4500 Rho/Rac GTPase guanine 24.6 1.6E+03 0.035 29.0 34.3 71 2112-2182 315-390 (604)
346 PF05997 Nop52: Nucleolar prot 24.5 1.2E+03 0.027 27.6 16.6 67 12-79 4-72 (217)
347 PF11919 DUF3437: Domain of un 24.5 1.6E+02 0.0035 29.5 5.5 58 2127-2185 4-61 (90)
348 PF12783 Sec7_N: Guanine nucle 24.4 9.1E+02 0.02 27.2 12.6 96 1392-1487 35-146 (168)
349 PF14676 FANCI_S2: FANCI solen 24.2 3.5E+02 0.0076 30.3 8.8 104 208-312 51-156 (158)
350 PF11935 DUF3453: Domain of un 23.9 1.3E+03 0.029 27.7 16.3 130 2161-2320 1-160 (239)
351 PF08146 BP28CT: BP28CT (NUC21 23.1 4.6E+02 0.0099 29.3 9.4 36 1713-1748 84-119 (153)
352 PF10350 DUF2428: Putative dea 22.4 9.5E+02 0.021 29.3 13.0 161 1471-1633 60-254 (255)
353 KOG3067 Translin family protei 22.3 1.6E+02 0.0036 32.7 5.5 35 842-876 11-45 (226)
354 smart00567 EZ_HEAT E-Z type HE 22.0 95 0.0021 23.6 2.8 29 1472-1510 1-29 (30)
355 PF12397 U3snoRNP10: U3 small 21.8 4.1E+02 0.009 28.1 8.6 87 324-420 3-92 (121)
356 smart00185 ARM Armadillo/beta- 21.8 1.1E+02 0.0025 24.7 3.5 28 2517-2544 13-40 (41)
357 PF08569 Mo25: Mo25-like; Int 21.0 1.8E+03 0.039 28.2 27.7 109 2076-2184 166-285 (335)
358 KOG1789 Endocytosis protein RM 20.4 2.8E+03 0.06 30.2 22.8 153 2427-2589 2001-2165(2235)
359 KOG2085 Serine/threonine prote 20.3 1.9E+03 0.042 28.3 22.2 129 2228-2360 298-429 (457)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-55 Score=533.10 Aligned_cols=561 Identities=50% Similarity=0.756 Sum_probs=525.2
Q ss_pred HHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHH
Q 000050 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2622)
Q Consensus 1201 l~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~ 1280 (2622)
++.+...+..++....+.|+++.| .|+...||..|++++..++..||.+.+..++|.|++.++.. .++.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhh
Confidence 444455555555555577887777 99999999999999999999999999999999999999863 278999999
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHH
Q 000050 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2622)
Q Consensus 1281 ~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~ 1360 (2622)
++++|.++.|+...|+++..+++.+++.+.+|++.||.+++.|+++++..........+..++..+.+..+...|++|++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887766655555555555556778999999999
Q ss_pred HHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHH
Q 000050 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2622)
Q Consensus 1361 ~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa 1440 (2622)
++++++++.|...+....++..+.+.+.++++...|+++++++...+..+|..++||+..++|.++.+++|....||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHH
Q 000050 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2622)
Q Consensus 1441 ~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~ 1520 (2622)
..+.+.++..++.++++.++|+++..+.+..|+++.++++++|.|++++|++++.++|.++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHH
Q 000050 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2622)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l 1600 (2622)
.||..+++.+.|++++.++|.|++++.||+..+.+|++.+..++|++++++++++.++|.+.+++.+++...++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHH
Q 000050 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1601 ~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~ 1680 (2622)
+++|..+.+++++.||++.++|.+...+.|+.|++|..++++||.+.+.+|+..+++..|++++.+..+....+|.+.++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhchhHHHhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHH
Q 000050 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2622)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al 1758 (2622)
.+++++...|.+...+++|.++...... ++.+|++.+.++..++..+|..|++|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 66799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 000050 1759 GAGHVLVEH 1767 (2622)
Q Consensus 1759 ~al~~lv~~ 1767 (2622)
++...+..+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887765544
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=9.6e-50 Score=492.10 Aligned_cols=1023 Identities=17% Similarity=0.196 Sum_probs=742.9
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH----HHHHHHHhc--cc-cccC
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQT--TF-VNTV 1569 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r----~al~~L~~~--~~-~~~~ 1569 (2622)
.++++..+++.|.|.+++|+..|++|++.+++.++...+..++..|+..+-...+..| -++.+.+.. .+ ....
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 4678899999999999999999999999999999888899999999988655555555 244444431 11 1234
Q ss_pred ChhhhhhHHHHHHhhhcC--CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
.......+.|.+..++.. ....++-.++++++.+...+|+ -+.+|...++..+...+..+...||+.+..++|.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 455667778888777643 3456888899999888877665 566678888888888899999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhc---cCCChhhHHHHHHHHH
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l---~~~~~~vR~~al~~l~ 1721 (2622)
...+.+.+..++..+.+.|.+.......+..+++++.++++.|.. +++.++|.+.+.+ +..++++|+.++++|+
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999987766666677899999999999976 4578899998888 5678999999999999
Q ss_pred HhhhhhCcchhhhHHhHHHHHHhhcCCCCh----------------------------------HHHHHHHHHHHHHHHH
Q 000050 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENE----------------------------------SVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1722 ~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~----------------------------------~VR~~al~al~~lv~~ 1767 (2622)
.+...++.+..||.+.++..++++++.+.. .||.+|.+++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873211 1555555555554432
Q ss_pred hhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHH
Q 000050 1768 YATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2622)
Q Consensus 1768 ~~~~---~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2622)
..+. ....+-|.+....++....++...+...-.++.+.+....-....+..|..+.. .....+.+ ....
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~--s~~~~L~~-----~~~~ 435 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP--SDLSMLSD-----QVPL 435 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc--cchHHHHh-----hhHH
Confidence 2111 111233334444444444455555555555554433321100000000000000 00011111 1123
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhccc---
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER--- 1919 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~--~~~R~~A~~~L~~lv~~~~~~--- 1919 (2622)
++.++-..+.+.+...|..++..+..++...|..+.++++.++|.+...++|.+ ...+..+..++.......++.
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 444444444466666899999999999999999999999999999999998654 456777777776666555544
Q ss_pred -hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh------hhHHHhHHhHHHHHHHHh--cCCcHHHHHHHHHHHH
Q 000050 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~ 1990 (2622)
..+.+.|++.....++-+.+-..++....+++....+ -...+|...++....+.+ .|.|.+||+.|+.|++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4567788888889999998888887777777665433 234678888888887766 4789999999999999
Q ss_pred HHHHHhChh---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHH-hCC
Q 000050 1991 TLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGP 2066 (2622)
Q Consensus 1991 ~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~-~g~ 2066 (2622)
.+..++|.. ....++|.+++.|+++.++-.+. +|+.-++.. ..-
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~Av--------------------------------kAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILLERLGNEITRLTAV--------------------------------KALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHH--------------------------------HHHHHHHhcccee
Confidence 999888853 23445666777776665443333 344333331 233
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~ 2142 (2622)
++.+.+..+++.+...+....+..|.....++..++.+++. ..+..++.++...+.+.+.++-+.|..++..++..
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 46688889999999999888888999999999999887643 44788888888888888899999999999999888
Q ss_pred ccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC---ccchhhHHHHHHHHHhhchhhhhhhhcCCccccc
Q 000050 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP---KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2622)
Q Consensus 2143 ~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~---~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2622)
.+..+......+++.++.++..+- +...|..++-.+....- ...++ +.. +...+... +.
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~-y~~-l~s~lt~P--------------V~ 785 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLD-YIS-LLSLLTAP--------------VY 785 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCcc-HHH-HHHHHcCC--------------cc
Confidence 777777777888999998887653 33444443333322111 01111 110 11111000 00
Q ss_pred cCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHh-hcCCCCHhhHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLS 2297 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~~~~~~~vk~~al~~L~ 2297 (2622)
+. ...+ +.......+.|.+.++..++ +.-++.+.. |+.- ...+.+..+|..++.+||
T Consensus 786 ~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~a~k----l~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 786 EQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSLATK----LIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred cc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhHHHH----HHHHHhCCCCchhHHHHHHhhhh
Confidence 00 0001 11222345677777777766 233333333 3333 333457789999999999
Q ss_pred HHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHH
Q 000050 2298 IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2298 ~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2622)
+++++.+.. ..+.+..+++++++.++++|+.+|+.|||.+.. ++.+.|+|+++..+.+ ++.-++..+++|++++
T Consensus 845 Elgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkevi 918 (1233)
T KOG1824|consen 845 ELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEVI 918 (1233)
T ss_pred hhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHHH
Confidence 999876643 345667799999999999999999999999876 7889999999999975 5677899999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH-------------------------------
Q 000050 2378 KHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ------------------------------- 2426 (2622)
Q Consensus 2378 ~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~------------------------------- 2426 (2622)
.........++.+.||.+|+..+...++++|+.+|+|||.|+.+.|+.-
T Consensus 919 ~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p 998 (1233)
T KOG1824|consen 919 VSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP 998 (1233)
T ss_pred HHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC
Confidence 8877665578999999999999999999999999999999998877521
Q ss_pred ------HHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH------------------hhhc
Q 000050 2427 ------LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------SSLK 2482 (2622)
Q Consensus 2427 ------~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~------------------~~~~ 2482 (2622)
..+.+.+++..+.+++...|+-+..+++++....|.-+ .++.+++++.++ +|..
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~V 1076 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHTV 1076 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccc
Confidence 11222233444556666666666667777777666655 345666666655 5678
Q ss_pred cCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHH
Q 000050 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPAL 2562 (2622)
Q Consensus 2483 ~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l 2562 (2622)
|++..+|++|++||+.+++.|.++ .++.+|+..+..|+.|. .|+|.+++.++..+|..+|..|.+.++.++++|
T Consensus 1077 DdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpL 1150 (1233)
T KOG1824|consen 1077 DDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPL 1150 (1233)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 889999999999999999999765 46789999999999986 899999999999999999999999999999999
Q ss_pred Hhhhc------------CCcchhhchhHHHHHHHhcccccchhHHHHHHHhhchhhhhhccCCCccccc
Q 000050 2563 AECLK------------DGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRLSKFPEHRYFV 2619 (2622)
Q Consensus 2563 ~~~~~------------~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 2619 (2622)
.+.+. ++....|++|.||+.+++++++. ++-+.|.+|. .||.+.||+++..
T Consensus 1151 r~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v-~~np~~~df~-----sqik~~pel~~~f 1213 (1233)
T KOG1824|consen 1151 RKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEV-EKNPQFSDFE-----SQIKSNPELAAIF 1213 (1233)
T ss_pred HHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhccccc-ccChHHHHHH-----HHhhcChhHHHHH
Confidence 99864 34666789999999999999885 4667888888 8999999988653
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-44 Score=465.27 Aligned_cols=906 Identities=17% Similarity=0.195 Sum_probs=641.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCCCC
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2622)
..+.+|+++++|||+.+|+.|+++|++.+... + .......+..+..++++|++|. ++|...+.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 47899999999999999999999999887553 1 1223334566777777777753 6899888778
Q ss_pred CCCh-HhHHHHh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000050 1129 GTDY-SGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2622)
Q Consensus 1129 ~~~~-~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~ 1205 (2622)
++.+ ..||..+ ..+...||++.|+++|+++.. .|+.|+++++.|+++.. +.+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7777 7777644 567889999999999999864 56689999999987642 223478999999999999
Q ss_pred hhhCCCChhHHHHH--HHhhhcCCCCHHHHHHHHHHHHHHHHHhc--cc---hhhhhHHHHHHHhcCC--CCChhhhhhh
Q 000050 1206 DVLRTKDLPVIMTF--LISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKK--ASDEEKYDLV 1276 (2622)
Q Consensus 1206 ~~~~~~~~~~i~~~--li~~~l~d~~~~VR~~a~~a~~~~i~~~g--~~---~~~~llp~~~~~l~~~--~~~~~~~~~v 1276 (2622)
..+++...+.+-.+ ++.++++|++..||..+++|...++.... +. ....++|.+...+... ..+++..+.+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 99998876643333 33689999888899999999999988875 22 2334555433333321 1121122233
Q ss_pred hhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhc---cc----hHHHHHHHHHHHh
Q 000050 1277 REGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQ---DE----APTLVSRLLDQLM 1347 (2622)
Q Consensus 1277 r~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~---~~----~~~~i~~Ll~~L~ 1347 (2622)
-+....+.+...+.+ .+.+..+++..+...++. ++.+|..+.+++..+..... .. ...+++.++..+.
T Consensus 227 l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 227 LEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 333333333222222 456777888888877776 47899999999887776521 11 1344555554443
Q ss_pred cCC--------------C-hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000050 1348 KSD--------------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2622)
Q Consensus 1348 ~~~--------------~-~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~ 1412 (2622)
+.. + ....+.|..+|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|+++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHH
Confidence 211 1 2356789999999999999988854 7999999999998 799999999999999999999
Q ss_pred cchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHh
Q 000050 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~ 1487 (2622)
.+.+.+.+++|.++.++.|+++.||.+|+.|++++...+.++ ....+.|.++..+++. +.++...|+.++.++.+
T Consensus 382 ~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 382 VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876 3466777888888774 56888888888877776
Q ss_pred -hCchhhhhhhhhhHH-HHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000050 1488 -CAPQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2622)
Q Consensus 1488 -~~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2622)
+....+.+||+.++. .+..+++...+.||+.++.+|+.++...++ ||++.++|.|...+...+..
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~---------- 531 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK---------- 531 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch----------
Confidence 455678999999999 555555677899999999999999988775 57788888888877655421
Q ss_pred ccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH---hcCCCHHHHHHH
Q 000050 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSVA 1639 (2622)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~vR~~a 1639 (2622)
.....|.+..++++.++..+|. +.|.|+...++..+... ..+.+...|...
T Consensus 532 -------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 532 -------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred -------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 1136777888889888888875 67899999999999888 445566789999
Q ss_pred HHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHH
Q 000050 1640 ARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2622)
Q Consensus 1640 ~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~a 1716 (2622)
+.+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|.+.. ++=..=.-.....--.-|+.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHHH
Confidence 99999999999988 567788888877654432200000 000000000000000 000000000111233557889
Q ss_pred HHHHHHhhhhhCcchhhhHHhHHHH-HHhhcCCCChHHHHHHHHHHHHHHHHhhh----------chhhhhHHHHhhccC
Q 000050 1717 LTLFKYLPRSLGVQFQNYLQQVLPA-ILDGLADENESVRDAALGAGHVLVEHYAT----------TSLPLLLPAVEDGIF 1785 (2622)
Q Consensus 1717 l~~l~~L~~~~g~~f~p~l~~ii~~-ll~~L~d~~~~VR~~al~al~~lv~~~~~----------~~i~~llp~l~~~l~ 1785 (2622)
+.+++.++..++..|.||+.++++. +....-+.++.||.+|..++..++...-. ..+..+.|.+.+.+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999993 44444577889999999999988765422 133457777777777
Q ss_pred CCchH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-HHHHHHHHHHHhCh------h-hHHHHHHHHHHhccCC
Q 000050 1786 NDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVLGR------D-KRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1786 d~~~r-vR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~-~~~~~~~l~~~Lg~------e-~~~~il~~L~~~~~D~ 1856 (2622)
++... +-.+.++.++..+..++...- .++.... .......+...... + .-.+.-..-.....+.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L-------~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~ 815 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCL-------NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQ 815 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccC-------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhh
Confidence 76655 555666777777666543210 0000000 00000000000000 0 0000000000001133
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2622)
....-..+.+++..++...+..|.+.+..+.|.+++.+.+.....|.+|..+++++++.+|+. +.+.++|.+...+.
T Consensus 816 d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~ 895 (1075)
T KOG2171|consen 816 DAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQ 895 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcC
Confidence 445667778889999999999999999999999999999877767999999999999999876 46789999999999
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhCh-hhhhhhHH
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGM-QAIDEIVP 2006 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d------~~VR~~A~~al~~l~~~~g~-~~~~~ilp 2006 (2622)
|++|+||+++.+++|.+.. ++++...+.....+|.+...+..++ ...+++|+.|+++++.+... ...++++|
T Consensus 896 d~~pEVRqaAsYGiGvlaq-~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~ 974 (1075)
T KOG2171|consen 896 DSDPEVRQAAAYGMGVLAQ-FGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLP 974 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHH
Confidence 9999999999999998755 4556677777778888877776543 34678899999999776543 34899999
Q ss_pred HHHHhccc---CCchhHHHHHHHHHHhh
Q 000050 2007 TLLHALED---DQTSDTALDGLKQILSV 2031 (2622)
Q Consensus 2007 ~Ll~~L~~---~~~~~~aL~~L~~il~~ 2031 (2622)
.|+.+|-- .++.....+.|..++..
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e~ 1002 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYES 1002 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHHh
Confidence 99999943 33344556666666644
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-40 Score=430.34 Aligned_cols=863 Identities=18% Similarity=0.225 Sum_probs=616.2
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh----
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~---- 1207 (2622)
+..|+..|.++|..+|+.|.+++......-| ..+ .+..+... ..+-++|..++.-++.++..
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~-~L~~i~~~------------~~~p~~Rq~aaVl~Rkl~~~~w~~ 71 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLP-ALAHILAT------------SADPQVRQLAAVLLRKLLTKHWSR 71 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHH-HHHHHHhc------------CCChHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999999999976654443 222 22222211 22347999999999888763
Q ss_pred hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHH
Q 000050 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2622)
Q Consensus 1208 ~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~l 1287 (2622)
+..+....+..-++.....++.+.||.+..+++.++.+....+.|+++++.+.++.+.++ ...|+.++..+..+
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSSL 145 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHhh
Confidence 233333456666655556789999999999999999998877799999999999988643 45789999888888
Q ss_pred hhhhccC-CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc------chHHHHHHHHHHHhcC---CChHHHHH
Q 000050 1288 AKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERRG 1357 (2622)
Q Consensus 1288 a~~l~~~-~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~------~~~~~i~~Ll~~L~~~---~~~~~r~~ 1357 (2622)
...+... .+++..+...+.+++.|++..||..++++++.++..... .+..++|.++..+... +|...-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8776554 468899999999999999888999999999999877741 2356777777766543 23333455
Q ss_pred HHHHHHHHHhhhCccchhh--hcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHcCC
Q 000050 1358 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRN-SAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSD 1431 (2622)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~~~-~~~~R~~al~al~~La~~~~---~~~~~~v~~ilp~ll~~l~D 1431 (2622)
+..+|..++...+ +.++. ..++.+..+...++. +...|+.|+..+..+++..+ +...+|...++|.++..+.|
T Consensus 226 ~l~~l~El~e~~p-k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 226 ALEALIELLESEP-KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 5556666665433 22211 156666666666543 78899999999999999855 55667888999999998764
Q ss_pred CCH----------------HHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1432 QVV----------------AVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1432 ~~~----------------~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
... .-...|..+++.++.++++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 311 2455678899999999987754 67777777889999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
..+++|++.+++.++|+||+||.+|+.|+|+++..+. |+++. ...
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~~ 429 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KHH 429 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HHH
Confidence 9999999999999999999999999999999998775 22211 011
Q ss_pred hhHHHHHHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1575 ALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
..+.|.+...+++. ++++..+|+.++.++.... ..+.+.||++.+|. .+..+++.+.+.||+.+..+||+++...++
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22334444444443 5688899999998887753 33578999999999 667777788999999999999999999997
Q ss_pred C---CchhhHHHHHHHhhhcCC---hHHHHHHHHHHHHHHHHhchhHHHh----HhHHHHHh---ccCCChhhHHHHHHH
Q 000050 1653 E---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRN---CSHQRASVRDGYLTL 1719 (2622)
Q Consensus 1653 ~---~~~~ll~~Ll~~L~~~~~---~~~r~~a~~~L~~i~~~~g~~~l~~----llp~l~~~---l~~~~~~vR~~al~~ 1719 (2622)
. |++.++|.|.+.|++... ...|.....+++-+..++|++.+.+ ++..+... ..+.++..|...+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 6 889999999999986542 2345567889999999999887644 44444444 234577889999999
Q ss_pred HHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHH
Q 000050 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2622)
Q Consensus 1720 l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll 1799 (2622)
++.+|+.+|++|.||++.++|++++...-..+..- ...+ ...+.-.+++|....
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-------------~d~~-------d~e~~~~~~~~e~~~------ 642 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-------------SDEE-------DEEEEQDLDGWEVVE------ 642 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-------------cCch-------hhhhccccccchhhc------
Confidence 99999999999999999999999987653321100 0000 000000111221100
Q ss_pred HHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhH
Q 000050 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2622)
Q Consensus 1800 ~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l 1879 (2622)
..+++.. | ..-....-+..|+..|+.++......|
T Consensus 643 ------------------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 643 ------------------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred ------------------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000000 0 011122346788999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhc------cc----hhhhHHHHHhhhcC-CCChhhHHhHHHHH
Q 000050 1880 KEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLG------ER----VLPSIIPILSRGLK-DPSASRRQGVCIGL 1947 (2622)
Q Consensus 1880 ~~~l~~ll~~L~~~-L~s~~~~~R~~A~~~L~~lv~~~~------~~----~l~~llp~L~~~L~-d~~~~vR~~a~~~L 1947 (2622)
.+|+...+...+.. .-..+..+|.+|+.++..+++..- +. .+..+.|.+...+. .+++++-.....++
T Consensus 678 ~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f 757 (1075)
T KOG2171|consen 678 APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESF 757 (1075)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 99999988843333 346788999999999998886542 21 34566677776666 46788888889999
Q ss_pred HHHHHhhChhhH-HHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhh---HHHHHHhcccCCchhHHHH
Q 000050 1948 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI---VPTLLHALEDDQTSDTALD 2023 (2622)
Q Consensus 1948 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~i---lp~Ll~~L~~~~~~~~aL~ 2023 (2622)
++.++.+|+..+ .++...+...+...+.+...+.+. ......-++. -...+. +.....++
T Consensus 758 ~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~-----------r~~~~~eed~d~~eee~~~-----e~d~~ll~ 821 (1075)
T KOG2171|consen 758 AECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD-----------RQEEDDEEDDDIEEEEDLD-----EQDAYLLD 821 (1075)
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHHHHHHh-----hhhHHHHH
Confidence 999888875443 223333333333222111111110 0000000000 000000 00011111
Q ss_pred HHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhh
Q 000050 2024 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTL 2103 (2622)
Q Consensus 2024 ~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~ 2103 (2622)
.....+.+++...+..+.|++..+.|.++..+.+..+..|..+..+++.++.
T Consensus 822 ----------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie 873 (1075)
T KOG2171|consen 822 ----------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIE 873 (1075)
T ss_pred ----------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 1234567777888999999999999999999977776559999999999998
Q ss_pred ccCh---hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC
Q 000050 2104 VIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2104 ~~~~---~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d 2166 (2622)
.+++ .....+++.++..+.|.+|+||++|.+.+|.+++..+.+|.+.+...++.|...++.++
T Consensus 874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ 939 (1075)
T KOG2171|consen 874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPL 939 (1075)
T ss_pred hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChh
Confidence 8765 45889999999999999999999999999999999998888877777777777776443
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=366.57 Aligned_cols=1067 Identities=18% Similarity=0.218 Sum_probs=719.3
Q ss_pred CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc
Q 000050 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2622)
Q Consensus 1295 ~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~ 1373 (2622)
+...+.++..+++.|+|.+.|||..|.+|+++++.++++. ...+++.++..+...+ .+.|..++.+|..++..+++..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 3445678899999999999999999999999999888764 5778888888877655 4789999999999998887622
Q ss_pred hh------hhcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000050 1374 LK------KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2622)
Q Consensus 1374 l~------~~~i~~~L~~~l~~~~-~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2622)
-. ...+.+.+.+++.... ....+-.++..++.+...+|..+.++...++..++..++.+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 11 1256677777765432 3446777788888888888888888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh---cCCCHHHHHHHHHH
Q 000050 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2622)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+.+ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999864 44556678899999999999999999999999999999 66788999999999
Q ss_pred HHHHhhhcCC---hhHHhHHHHHHhhc-CCCChhHH----HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHH
Q 000050 1523 LQQVGSVIKN---PEIASLVPTLLMGL-TDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2622)
Q Consensus 1523 L~~l~~~~~~---~~i~~ilp~Ll~~l-~d~~~~~r----~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~ 1594 (2622)
++.|....+. |++..++..+++.+ .||+.... +--+.+-........+ .-..=+|.+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d----------eYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD----------EYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcc----------ccccccchhHHHHH
Confidence 9999987763 44566666666665 47753211 0000000000000000 00011345899999
Q ss_pred HHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhhhcCCh
Q 000050 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2622)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~--~L~~~~~~ 1672 (2622)
+|+.++..+.. +..+-+..++..+-|.+...+.+....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 99999998876 343456667888889999999999999999999999988876553 2222210 00000001
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC--
Q 000050 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-- 1750 (2622)
..+....+.. ..++..+-+.+.+.+...|.+++..+..+....++...+|++.++|.+...+.|..
T Consensus 424 s~~~~L~~~~------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQV------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhh------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 0111111111 22233333344455566899999999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccH
Q 000050 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~ 1826 (2622)
...+..++..+...+...+.+ .+..+.|.+.....|..+++-..++-..+.++..+.+......+ |...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 356677777777776666655 34567788888889999999999999999998876544321111 11111
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000050 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2622)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~ 1906 (2622)
+...+. -.++.+ ...|.+.+||+.|+.+++.++.+++..+...+|..++.++++++ ++-+|..|+
T Consensus 566 --v~~m~~---------~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMYD---------CTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHHH---------HHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 111111 111111 24788999999999999999999998888999999999999996 567999999
Q ss_pred HHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1907 ~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
+++..++...- ..++..++|.+...++......|.+...++..++...+...-...++.++..+...+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875421 12466778888777776677889999999999988876544455567777777788888899999
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhcccCCchhHHHHHHHHHHhh----hcccc-ccchhhhhhcCCCchHHH
Q 000050 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILSV----RTTAV-LPHILPKLVHLPLSAFNA 2054 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~----~~~~i-lp~Lip~L~~~~~~~~~~ 2054 (2622)
+.|...+..+...... ...+.+++.++..++++--.++++.++...+.. +.... .-.++..++.|-..
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~---- 786 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE---- 786 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc----
Confidence 9988888877554332 234677888888888887777766665543311 10000 11111111111000
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhccChhc---HHHHHHHHHhhcCCCChhHHH
Q 000050 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRR 2130 (2622)
Q Consensus 2055 ~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~---l~~ll~~Ll~~l~d~~~~vR~ 2130 (2622)
...+ -+...-...+.|.+.+...+++.. ...++..+.. ...+..+|.
T Consensus 787 ---------------------------~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikv 837 (1233)
T KOG1824|consen 787 ---------------------------QVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKV 837 (1233)
T ss_pred ---------------------------ccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHH
Confidence 0000 001111223344455554554322 2333333333 234577888
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhh
Q 000050 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210 (2622)
Q Consensus 2131 ~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~ 2210 (2622)
.|...+|.+.++...... +++-..++..|+.++++|+.+|..|||++....-..+
T Consensus 838 fa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y---------------------- 892 (1233)
T KOG1824|consen 838 FALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY---------------------- 892 (1233)
T ss_pred HHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH----------------------
Confidence 999999999876443333 3455577889999999999999999999865332222
Q ss_pred hcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHH
Q 000050 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKS 2290 (2622)
Q Consensus 2211 ~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~ 2290 (2622)
+|.+++.+.+. +.-+.--...+-+++...+..
T Consensus 893 --------------------Lpfil~qi~sq-pk~QyLLLhSlkevi~~~svd--------------------------- 924 (1233)
T KOG1824|consen 893 --------------------LPFILEQIESQ-PKRQYLLLHSLKEVIVSASVD--------------------------- 924 (1233)
T ss_pred --------------------HHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccc---------------------------
Confidence 22222222211 111111122222222222211
Q ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHH
Q 000050 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAIL 2370 (2622)
Q Consensus 2291 ~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l 2370 (2622)
.++|+++.+|..+.+......+..|+..++|||.|+...| +.++|.|-..+.++.+..|..++
T Consensus 925 ---------------~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~vv 987 (1233)
T KOG1824|consen 925 ---------------GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSSVV 987 (1233)
T ss_pred ---------------hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhhhh
Confidence 3456677777777777777778889999999999988665 67899998888888899999999
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcC-----------
Q 000050 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS----------- 2439 (2622)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~----------- 2439 (2622)
.|.+..+..-...+.+-..+.|-+++ ..++|++..||+.+..++...+++-|. -+..+++++++++.
T Consensus 988 savKfsisd~p~~id~~lk~~ig~fl-~~~~dpDl~VrrvaLvv~nSaahNKps-lIrDllpeLLp~Ly~eTkvrkelIr 1065 (1233)
T KOG1824|consen 988 SAVKFSISDQPQPIDPLLKQQIGDFL-KLLRDPDLEVRRVALVVLNSAAHNKPS-LIRDLLPELLPLLYSETKVRKELIR 1065 (1233)
T ss_pred heeeeeecCCCCccCHHHHHHHHHHH-HHHhCCchhHHHHHHHHHHHHHccCHh-HHHHHHHHHHHHHHHhhhhhHhhhh
Confidence 99999988777766444444444544 688999999999999999999999885 66667776665533
Q ss_pred -----------CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCC
Q 000050 2440 -----------SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508 (2622)
Q Consensus 2440 -----------~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~ 2508 (2622)
++....|..++.++..++..+-+.+. ...+...+..++.|. -+++.-....+.++...|....
T Consensus 1066 eVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~d----it~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~V- 1139 (1233)
T KOG1824|consen 1066 EVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLD----ITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAV- 1139 (1233)
T ss_pred hhcccCccccccchHHHHHHHHHHHHHHHHhhhhhcc----HHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHH-
Confidence 23334455555566555544333321 123334444455544 5666666666666665553210
Q ss_pred CCchhhHhHHHHHHhhcC------------CCCHHHHHHHHHHHHHHHh
Q 000050 2509 ANTTVVVDILASVVSALH------------DDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2509 ~~~~~l~~~l~~l~~~l~------------d~s~dvr~~a~~~l~~~a~ 2545 (2622)
...++.++.++-.-+. ++..|.+|.|+.++.++-+
T Consensus 1140 --lqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1140 --LQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred --HHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 0223444444433221 3445788888888888844
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-34 Score=351.68 Aligned_cols=660 Identities=17% Similarity=0.224 Sum_probs=464.2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeee------------------cCCchHHHHHHHH
Q 000050 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV------------------HDPEKSVAEAAED 1119 (2622)
Q Consensus 1058 ~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~la~~ 1119 (2622)
++.++|..++|||.++|+.|+.+|.... ..++|.++..+.++.... +..+++...-...
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 5678888899999999999999998864 345555555555443322 1223333333457
Q ss_pred HHHhcCCCCCCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000050 1120 IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2622)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2622)
.|-....+.++++ ..++..|.++.+..+..|++++|.++. +-| ..||+++..+.+.. .. ..+..+|++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv----~~-----~~~~~~k~~ 149 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV----GE-----EQASMVKES 149 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc----cc-----ccchHHHHH
Confidence 8998777777777 677899999999999999999999863 222 24444444444321 11 122368999
Q ss_pred HHHHHHHhhhhhCCCCh----hHHHHHHHhhhc-CCCCHHHHHHHHHHHHHHHHHhcc----c-hhhhhHHH-HHHHhcC
Q 000050 1197 IALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGR----D-NVSLLFPI-FENYLNK 1265 (2622)
Q Consensus 1197 ~~~al~~~~~~~~~~~~----~~i~~~li~~~l-~d~~~~VR~~a~~a~~~~i~~~g~----~-~~~~llp~-~~~~l~~ 1265 (2622)
+..++||+|+.+.++.. +.++..++.++. ..++..||.++++|+...++..+. + .++.+|.+ |+.+...
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP 229 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC
Confidence 99999999999888754 346667765554 457899999999998766555442 2 35666665 5555442
Q ss_pred CCCChhhhhhhhhHHHHHHHHHhh-hhccCCcchHH-HHHHHHHHcCCCCHHHHHHHHhhhHhhHhh-------------
Q 000050 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------------- 1330 (2622)
Q Consensus 1266 ~~~~~~~~~~vr~~~~~~~~~la~-~l~~~~~~v~~-i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~------------- 1330 (2622)
+.+++.+++.++..+.. |++.-.+++.. ++..-+..+++++++|...+.+.-+.+...
T Consensus 230 -------d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 230 -------DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788888888877763 33333455544 777778888888888876665543322210
Q ss_pred ----------hccchHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHH
Q 000050 1331 ----------MQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2622)
Q Consensus 1331 ----------~~~~~~~~i~~Ll~~L~~~------~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~ 1394 (2622)
.....+.++|.|++.|.++ ++|...++|..||..+++..|+..+. ++++|+++.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 0112347889999999874 37999999999999999999999987 8999999999998 899
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhhHHHHHhhcc
Q 000050 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~ 1468 (2622)
.|++|.++||++.++.. ....|++.+.+|.++..+.|+...||+++..+++.+++.++.... ...++.++++|.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999866 668899999999999999999999999999999999887765432 334444455554
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh---------hhhhhhhHHHHhhhhc--C-CCHHHHHHHHHHHHHHhhhcCChhHH
Q 000050 1469 DKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2622)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2622)
+ ..++-..+|+++..+++.+++.. .++++.|+..|++..+ | .....|.+|..||+.+.+..++....
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 35666667777777776544321 1245555555555543 2 34567777777777777665432221
Q ss_pred ---hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1537 ---SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1537 ---~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
.+.+..+..+ ..++. .......+. +.-.+++...|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl-------~q~i~----~~~l~~~dr---------------~q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKL-------DQTIS----SQILSLADR---------------AQLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHH-------HHHHH----HHhccHhhH---------------HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 1112211111 01111 000000000 01135566677778887777654 88
Q ss_pred cchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh
Q 000050 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~ 1689 (2622)
.++.+.+|..+.+.++. .+..+.+.|+-++++++..+|+. |++.+.|+|...|++.....+-..+..-+|.+++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997 56678999999999999999976 789999999999977665544444444478999999
Q ss_pred chhHH---HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC---CC--C------hHH
Q 000050 1690 GTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA---DE--N------ESV 1753 (2622)
Q Consensus 1690 g~~~l---~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~---d~--~------~~V 1753 (2622)
+.+.. ++++..+++.++++ +..+|+..+++|++++...|.+|.||+..+++.+.+.-+ |. + +.+
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 98854 78899999999886 678999999999999999999999999999998877652 21 1 235
Q ss_pred HHHHHHHHHHHHHHh
Q 000050 1754 RDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1754 R~~al~al~~lv~~~ 1768 (2622)
|++++++...++..+
T Consensus 751 Re~~leay~gi~qgl 765 (859)
T KOG1241|consen 751 REGILEAYTGIIQGL 765 (859)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666665555544433
No 7
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=1.8e-35 Score=373.15 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.7
Q ss_pred hHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhccch
Q 000050 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2622)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2622)
||||+.+++||..++. . .++.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred hH-HHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhhhhhhH
Q 000050 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2622)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2622)
++ +||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 84 99999999999999 55677888999999999999999999765 45555555521111 11 2222 34
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000050 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2622)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2622)
..+|.++.++||+| +++|+|+| .++||.+|.+++++.++..+..+..++. ..+|+++|||++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 56999999 6688888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHhhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000050 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2622)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2622)
.+++++.++|+ +...++.++++|+....... ...+.+....... .....+++ ....... . .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999999 78889999999997653111 0000110111111 11222221 1111111 0 34
Q ss_pred ccchhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000050 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2622)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2622)
+.++++|++||||.|.. +++|+++| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999975 37899995 33 99999999999963
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-28 Score=293.91 Aligned_cols=751 Identities=17% Similarity=0.220 Sum_probs=510.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh----h
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~----~ 1208 (2622)
..|++.-.+|+..+|+.+-..+-..- .+||.-..+.-.|... + .++...|..+.+.|+.-... +
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~~-~~pdfnnYL~~IL~~~-----~------~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQFN-LFPDFNNYLIYILIRA-----K------SEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHh-cccchhceeeEEEecc-----c------ccchhHHHHhhhhHhccccccccCC
Confidence 34555556899999998887763332 3666443332222211 1 23456788888888765442 2
Q ss_pred CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHh
Q 000050 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2622)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la 1288 (2622)
+.+....+..-. .+++||.++.+|......+..++...|..+|++++|.+-++|...+. ...|+++-.+..+.
T Consensus 84 ~~~~~~yiKs~~-l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 84 PSEVLDYIKSEC-LHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKIC 156 (885)
T ss_pred ChHHHHHHHHHH-HhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHH
Confidence 332222222222 38899999999998888888888989999999999999999987543 33566655554444
Q ss_pred h----hhccC--CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHh---cCCChHHHHHHH
Q 000050 1289 K----HLAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGAA 1359 (2622)
Q Consensus 1289 ~----~l~~~--~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~---~~~~~~~r~~Aa 1359 (2622)
. .++.+ +..+..++++++++++++++.+|..+..|+..++.......-..++..++.++ +.++..+|+..+
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC 236 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVC 236 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 2 23222 34577889999999999999999999999998886655444344455555443 456779999999
Q ss_pred HHHHHHHhhhCccchh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHcC--C---
Q 000050 1360 FGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFS--D--- 1431 (2622)
Q Consensus 1360 ~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~--~~~~~~~~v~~ilp~ll~~l~--D--- 1431 (2622)
.++..+....+.+... -..+++++.+..++. |.++-..|+.....+++. +...+.||+.+++|.++..+. |
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 9999998876654332 126788888888877 566777788888888875 446788999999999988542 1
Q ss_pred ------C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1432 ------Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1432 ------~---------------------------------------------~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
. +.+.|+..+.+++.++..++.+....++
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 0 0357888888999999888888889999
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC----hhHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIA 1536 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~ 1536 (2622)
|.+-+.|.+++|.+|.+++.++|+||+++-+.+.++||.++|.++.+|.|..+-||...||+|.+++..+-+ .++.
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~ 475 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK 475 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988753 3567
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCCh---hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~---~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
+++..|++.+-|.+..+++|...-.. ++....+. |.+..++..+..++..-..+--....+++|.++..+|..-.-
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfA-tleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFA-TLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK 554 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc
Confidence 88888888889999999865432211 12222221 455555555555553211111123456778888777654333
Q ss_pred cchHhhhHHHHHHH---hcCCCHHHHHHHHHHHHHHHhhhCCCCch---hhHHHHHHHhh--------hcC-Ch---HHH
Q 000050 1614 IPYIGLLLPEVKKV---LVDPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALK--------SDN-SN---VER 1675 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~---L~d~~~~vR~~a~~aL~~L~~~~g~~~~~---~ll~~Ll~~L~--------~~~-~~---~~r 1675 (2622)
..|++.+||.|.+. +.|.++++ ---.+|+++++.++|..+.+ .+....+..++ ... +. .+|
T Consensus 555 ~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdk 633 (885)
T KOG2023|consen 555 PAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDK 633 (885)
T ss_pred HHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCc
Confidence 56888899998875 44666554 35689999999999987433 33322222222 111 00 111
Q ss_pred H---HHHHHHHHHHHHhchhH--H---HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1676 S---GAAQGLSEVLAALGTVY--F---EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1676 ~---~a~~~L~~i~~~~g~~~--l---~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
- .+..-++.+++++|... + ..++..+.+.+.+.-++||++++.+++.+...+.+...|++..++|.+...+.
T Consensus 634 dfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 634 DFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLN 713 (885)
T ss_pred ceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCC
Confidence 1 23344667777776542 1 45777788889999999999999999999999999999999999999987777
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
-++-.+-..|..|++.+...++.+.-.. ++
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~-----------------------v~--------------------------- 743 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQY-----------------------VS--------------------------- 743 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhH-----------------------HH---------------------------
Confidence 6666777777777777655544331100 00
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQV 1904 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~ 1904 (2622)
.++..++.. ...+...+-+...-++|.+....|..+.++++.++..-+..++. .+.+.+..
T Consensus 744 ----------------~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~s 807 (885)
T KOG2023|consen 744 ----------------PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKES 807 (885)
T ss_pred ----------------HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHH
Confidence 111111111 12223344555566788888888999999999998887777764 45567888
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHh--hhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH
Q 000050 1905 AGRALGELVRKLGERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2622)
Q Consensus 1905 A~~~L~~lv~~~~~~~l~~llp~L~--~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2622)
|.+.+..++...+..+...+.-+.. ....++..+.|......|-..-...|...+..+..++-|.+.
T Consensus 808 AFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~ 876 (885)
T KOG2023|consen 808 AFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLK 876 (885)
T ss_pred HHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHH
Confidence 9999999887665554333222211 223345556666655555444444444444444444444333
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-28 Score=290.12 Aligned_cols=768 Identities=19% Similarity=0.211 Sum_probs=521.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc---cccCChhhhhhHHHHHHhh
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~---~~~~~~~~l~~i~p~L~~~ 1584 (2622)
...+++.+|+++.+.+.++-. -|++..++-.++......+..+|.+...+.+... ........+..+-..+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 345789999999999998865 2444433333333333444556654444444211 1123345666677778889
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--------CCch
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENFP 1656 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~--------~~~~ 1656 (2622)
+.|.++-+|...--++..+++. .-....+.++|.|.++|..++....+.|+.||..+.+-..+ ..+.
T Consensus 99 lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999988887665555555442 12335689999999999999999999999999999874332 2456
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
-++|.+++..+.. +...|..+..++..++...... .++.++..+....++.+++||...+.+|..+-...++.+.|
T Consensus 174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 7889998888766 5668998888887765543333 35778888899999999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH--HHh
Q 000050 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL--FKV 1806 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~-----~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll--~~~ 1806 (2622)
|+..++..++....|.+++|...|.+.+..+.+.- -...++.++|-+.+++.-.+..+ -+++.-- ..+
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998877777776665431 12256778888887763211110 0111000 000
Q ss_pred cC-------Cc--ccc----cc--cCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000050 1807 AG-------TS--GKA----LL--EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2622)
Q Consensus 1807 ~~-------~~--~~~----~~--~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2622)
++ .. ++. .. ++++|||+++. ...+..|+.|++++.++..+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVL 382 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVL 382 (885)
T ss_pred CchhhhccchhhhchhccCcccccccccccccccc-------------------------ccccccccHhhccHHHHHHH
Confidence 00 00 000 00 00000110000 01235689999998888888
Q ss_pred HhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHH
Q 000050 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2622)
Q Consensus 1872 ~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~ 1948 (2622)
+...+. +.++.++|.+.+.|.+.+|.+|..++-++|.+++.+-.. .+|.++|.+.+.+.|+.+-||.-+|++|+
T Consensus 383 anvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 383 ANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 877765 678999999999999999999999999999999987554 47889999999999999999999999998
Q ss_pred HHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHH
Q 000050 1949 EVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2622)
Q Consensus 1949 ~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~i 2028 (2622)
........+.-..|+..++..+++.+-|.+..|+++|+.+|+.+-+..|. +++|++-..| +.|.-.
T Consensus 460 Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp~l~~IL----------~~l~~a 525 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVPYLEYIL----------DQLVFA 525 (885)
T ss_pred hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHHHHHHHH----------HHHHHH
Confidence 76544333334467777888888888899999999999999999887775 3444432222 122112
Q ss_pred HhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChh--hhHhhhHHHHHHh---cCCCCHHHHHHHHHHHHHhhh
Q 000050 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN--FHLGTILPALLSA---MGDDDMDVQSLAKEAAETVTL 2103 (2622)
Q Consensus 2029 l~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~--~~l~~il~~Ll~~---l~~~~~~vr~~a~~al~~l~~ 2103 (2622)
++.+-...+- .--.|+|.+|...|+++. .|+.-++|+|++. +.++|+++= -..+|+..+..
T Consensus 526 f~kYQ~KNLl-------------ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~ 591 (885)
T KOG2023|consen 526 FGKYQKKNLL-------------ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIAS 591 (885)
T ss_pred HHHHhhccee-------------hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHH
Confidence 2111111110 124688999999998876 5789999999986 466665542 24556666665
Q ss_pred ccCh-------hcHHHHHHHHH-------hhcCC-----CChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHh
Q 000050 2104 VIDE-------EGVESLVSELL-------KGVGD-----NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLL 2162 (2622)
Q Consensus 2104 ~~~~-------~~l~~ll~~Ll-------~~l~d-----~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l 2162 (2622)
+.+. +..+..+..+. ..-.+ ++...-..++..+..+++..+....+.+ .+++..++.++
T Consensus 592 AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~ 671 (885)
T KOG2023|consen 592 ALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL 671 (885)
T ss_pred HHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh
Confidence 4432 22233332222 11111 2233334677788888777665444332 45788889999
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCC
Q 000050 2163 SDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS 2242 (2622)
Q Consensus 2163 ~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~ 2242 (2622)
.|.-++||+.++.-|+.+++.+.....| .+..++|++...+....
T Consensus 672 ~D~~peVRQS~FALLGDltk~c~~~v~p-----------------------------------~~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 672 QDEVPEVRQSAFALLGDLTKACFEHVIP-----------------------------------NLADFLPILGANLNPEN 716 (885)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHHHHHHhhcCChhh
Confidence 9999999999999999998876432221 23345555555554445
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000050 2243 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2622)
Q Consensus 2243 ~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~ 2321 (2622)
-.+-.+|+.++|.++...| ...++|+..++..|+-+++.. .+..+.....-++|.++...|..+.|++++.++.-...
T Consensus 717 isv~nNA~WAiGeia~k~g-~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~s 795 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKMG-LKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTS 795 (885)
T ss_pred chHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHH
Confidence 5667789999999999998 788999999999999988754 34457777888999999999999999999998887777
Q ss_pred hCCC-CHHHHHHHHHHHHHHHhcccC-hhhHHHHHH---HhhhcCCHhHHHHHHHHHHHHHhhcC
Q 000050 2322 LQDS-TRTVRSSAALALGKLSALSTR-VDPLVGDLL---SSLQVSDAGIREAILTALKGVLKHAG 2381 (2622)
Q Consensus 2322 L~d~-~~~vR~~Aa~aLg~L~~~~~~-~~~ll~~Ll---~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2622)
+.+- +.+-+..|...+-.++...|. +-.-+..++ ....++...+|....+-|...-...|
T Consensus 796 l~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg 860 (885)
T KOG2023|consen 796 LRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVG 860 (885)
T ss_pred hcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Confidence 7764 567788999999988776552 222233333 33333444555544444444333333
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=4.7e-22 Score=279.25 Aligned_cols=1303 Identities=16% Similarity=0.144 Sum_probs=728.6
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDEY------------PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~ 1199 (2622)
++.|+..|.+.+...|+.+|.+|..+.... ++.++.++..+.+. + ..+--++..+..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g------s-----k~d~~L~~~Av~ 169 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG------N-----KQDKVVEGLLTG 169 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC------c-----hhhHHHHHHHHH
Confidence 467888888889999999999999986432 22334444433310 0 001123444567
Q ss_pred HHHHhhhhhCCCCh----hHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc--ch--hhhhHHHHHHHhcCCCCChh
Q 000050 1200 ALHSAADVLRTKDL----PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN--VSLLFPIFENYLNKKASDEE 1271 (2622)
Q Consensus 1200 al~~~~~~~~~~~~----~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~--~~--~~~llp~~~~~l~~~~~~~~ 1271 (2622)
+|..++..-++... ...+..++ ..+.+.++.++..+..++......++. .. -...+|.|-+++...
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg----- 243 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG----- 243 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----
Confidence 78777764332110 01223332 455678888888887766555433221 11 134578888888642
Q ss_pred hhhhhhhHHHHHHHHHhhhhccCCcch--HHHHHHHHHHcCCCCHH---------HHHHHHhhhHhhHhhhccchHHHHH
Q 000050 1272 KYDLVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVS 1340 (2622)
Q Consensus 1272 ~~~~vr~~~~~~~~~la~~l~~~~~~v--~~i~~~L~~~l~~~~~~---------Vq~~a~~~L~~lv~~~~~~~~~~i~ 1340 (2622)
.+..+|+.+.-.++.|+.+-......+ ...++.|++.+..|+.+ .|+.+..+|+.+.... ..+++
T Consensus 244 ~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~ 319 (2102)
T PLN03200 244 NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALIL 319 (2102)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHH
Confidence 123678888888888885411100001 11356667777666543 4778888887776332 34555
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc-----hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-c
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-----LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-F 1414 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~-----l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~ 1414 (2622)
.+-+.+....+...--.+..+++.+........ +....+.+.|.+++++++.....+.+..++..+ +|.. +
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl---~gN~~l 396 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL---YGNAYL 396 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh---cCChHH
Confidence 555544333343333345566666654332211 222345678888998874333455555555332 2221 1
Q ss_pred hhH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000050 1415 EPY--VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2622)
Q Consensus 1415 ~~~--v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~ 1488 (2622)
... -.+..+.++..+...+.+++..+..++..+...-.... -...+|.|++.|.+++-..+..++..++.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 12567778888888888999999999988875433221 145789999999998888999999999999876
Q ss_pred Cchhhh-hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-hH--HhHHHHHHhhcCCCChhHH-HHHHHHHh
Q 000050 1489 APQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2622)
Q Consensus 1489 ~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~ 1562 (2622)
.+++.. -.-...+|.|.++|..++..+|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .++.++..
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 554321 11246889999999999999999999999999874221 1 12 2578889999988776666 56666544
Q ss_pred ccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc-ch--HhhhHHHHHHHhcCCCHHHHHHH
Q 000050 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVA 1639 (2622)
Q Consensus 1563 ~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~vR~~a 1639 (2622)
. ...-+. ..++.+...+...++.++..+...++++...... ++.. .. -...++.|.+++.++++.+++.|
T Consensus 557 L--i~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~A 629 (2102)
T PLN03200 557 L--VRTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKA 629 (2102)
T ss_pred H--Hhccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHH
Confidence 2 111121 2345566777777889999999999998775432 2211 10 13578999999999999999999
Q ss_pred HHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH---H--HhHhHHHHHhccCCCh
Q 000050 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRA 1710 (2622)
Q Consensus 1640 ~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l--~~llp~l~~~l~~~~~ 1710 (2622)
+.+|..++..-.+. .....+|.++..|.+.. ..++..++.+|+.+......+. + ...+|.+++.+.+.+.
T Consensus 630 a~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~ 708 (2102)
T PLN03200 630 ASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI 708 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence 99999998743321 24567888888887655 4578899999999886433221 1 3578899999999999
Q ss_pred hhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch-h------hhhHHHHhhc
Q 000050 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDG 1783 (2622)
Q Consensus 1711 ~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~-i------~~llp~l~~~ 1783 (2622)
.+++.++.++..++..-...-.-.-...++++...+....+.+|+.|..++..++...+... + ...+..+.+.
T Consensus 709 ~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~ 788 (2102)
T PLN03200 709 EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDL 788 (2102)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHH
Confidence 99999999999998754321111123578999999999999999999999999887665332 1 1244555555
Q ss_pred cCCCchHHHH--HHHHHHHHHHHHhcCCc-ccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHH
Q 000050 1784 IFNDNWRIRQ--SSVELLGDLLFKVAGTS-GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860 (2622)
Q Consensus 1784 l~d~~~rvR~--~a~~ll~~ll~~~~~~~-~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~V 1860 (2622)
+...+-+... .+++.+..+...-.+.. .+. .+..+.+.-+ -+..+..|+.+.++.+
T Consensus 789 L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~---------------~~~~~~e~p~------~l~~l~~~l~~~~p~~ 847 (2102)
T PLN03200 789 LNSTDLDSSATSEALEALALLARTKGGANFSHP---------------PWAVLAEVPS------SLEPLVRCLAEGHPLV 847 (2102)
T ss_pred HhcCCcchhhHHHHHHHHHHHHhhcccCCCCCC---------------chhhHHhccC------chHHHHHHHHcCChHH
Confidence 5555544333 36777776654311110 000 0111222111 1233444557788889
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHH---HHHHHHHHH-hcCCCHHHHHH---------------HHHHHH-----------
Q 000050 1861 RQAALHVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERRQV---------------AGRALG----------- 1910 (2622)
Q Consensus 1861 R~aA~~~l~~l~~~~p~~l~~~l~---~ll~~L~~~-L~s~~~~~R~~---------------A~~~L~----------- 1910 (2622)
.+.|++++..++...|.-+..++. ..+..+..+ +++++.++|.. ...++.
T Consensus 848 ~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (2102)
T PLN03200 848 QDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQA 927 (2102)
T ss_pred HHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 999999999998877755544432 222222222 23444444321 111111
Q ss_pred --HHHHHhcc------ch---------------------------hhhHHHHHhhhcCCCChhhH-----HhHHHHHHHH
Q 000050 1911 --ELVRKLGE------RV---------------------------LPSIIPILSRGLKDPSASRR-----QGVCIGLSEV 1950 (2622)
Q Consensus 1911 --~lv~~~~~------~~---------------------------l~~llp~L~~~L~d~~~~vR-----~~a~~~L~~l 1950 (2622)
++.+.-.. .+ -+.+-=+|...+.+.++..| .++..+|.+=
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~ 1007 (2102)
T PLN03200 928 LVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEK 1007 (2102)
T ss_pred HHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHH
Confidence 11110000 00 00000011111111111111 1122222221
Q ss_pred HHhhC---hhhHHHhHHhHHHH-HHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHH
Q 000050 1951 MASAG---KSQLLSFMDELIPT-IRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALD 2023 (2622)
Q Consensus 1951 i~~~~---~~~l~~~l~~ll~~-l~~~L-~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~ 2023 (2622)
+..+. ....++--..-+.. +...| +|++-.--.++..++ |.|-..|++++. +..+.+
T Consensus 1008 ~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~q 1071 (2102)
T PLN03200 1008 LASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAI----------------PSLANLLKSEETIDRYFAAQ 1071 (2102)
T ss_pred HHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHh----------------HHHHhhhhhHHHHHHHHHHH
Confidence 11110 00000001111111 33333 232211111222222 222222222221 112223
Q ss_pred HHHHHHhhhccc---------cccchhhhhhcCC---------------CchHHHHHHHHHHHHhCCChhhhHhhhHHHH
Q 000050 2024 GLKQILSVRTTA---------VLPHILPKLVHLP---------------LSAFNAHALGALAEVAGPGLNFHLGTILPAL 2079 (2622)
Q Consensus 2024 ~L~~il~~~~~~---------ilp~Lip~L~~~~---------------~~~~~~~aL~sLa~~~g~~l~~~l~~il~~L 2079 (2622)
++..++...++. ....++..+-... .+.....++..+.++-.-.....-.+.+|.|
T Consensus 1072 ~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~L 1151 (2102)
T PLN03200 1072 ALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLL 1151 (2102)
T ss_pred HHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 333222111110 1111111111000 0011233444443321111223346779999
Q ss_pred HHhcCCCC--HHHHHHHHHHHHHhhhccCh-------hc-HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccc
Q 000050 2080 LSAMGDDD--MDVQSLAKEAAETVTLVIDE-------EG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 2149 (2622)
Q Consensus 2080 l~~l~~~~--~~vr~~a~~al~~l~~~~~~-------~~-l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~ 2149 (2622)
++.|+... +.+|..+...+..+....+. .+ ++.+.. ++....+ ......+..++..++.. .+...
T Consensus 1152 v~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k-vLSl~~s--~s~e~a~~ElL~IL~~~--~e~~~ 1226 (2102)
T PLN03200 1152 VDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK-YLSLGPQ--DSTEEAASELLRILFSS--PELRR 1226 (2102)
T ss_pred HHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH-HHHhcCc--cchhHHHHHHHHHHhCC--HHHHH
Confidence 99997554 46788888888777653221 12 222222 2222221 12234455555555521 12211
Q ss_pred --cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2150 --EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2150 --~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
-....+..|+..+...+...|.+|..+|..++.... .+..+ .-
T Consensus 1227 ~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a 1271 (2102)
T PLN03200 1227 HESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LA 1271 (2102)
T ss_pred HhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hh
Confidence 124567888888888888899999888888765311 00000 00
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh-hh-hhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-LK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~-l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2622)
...+|.|...+.++....+..++.+|-.+++.-.... .+ ..-...+..++++|.+..+.+.+..++..+..+......
T Consensus 1272 ~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~ 1351 (2102)
T PLN03200 1272 RQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRI 1351 (2102)
T ss_pred hccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHH
Confidence 1235566677777777888888888888886432111 11 011144566778888776667777777666533221111
Q ss_pred CccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---------ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHH
Q 000050 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2622)
Q Consensus 2306 ~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~---------~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2622)
..++---..+..++..+.|+...+...|..+|-.|... ++-..|++. .+-.......+.++.+|..+
T Consensus 1352 R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl 1427 (2102)
T PLN03200 1352 RSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKL 1427 (2102)
T ss_pred HhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHH
Confidence 11121223455667777776677789999999988542 222333333 33223556678888888777
Q ss_pred HhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC----ch---HHHHHHHHHHhhcCCCCchhhHhH
Q 000050 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME----DG---QLADLLQELLNLASSPSWAARHGS 2449 (2622)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~----~~---~~~~~l~~ll~~~~~~~~~~r~~~ 2449 (2622)
....+....+....-+++.+...++...+.++..+++.+.-+.-+-. .+ ...|++-.++. ....-| ..|++
T Consensus 1428 ~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~~a 1505 (2102)
T PLN03200 1428 GKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTR-PDLGTW-GQHSA 1505 (2102)
T ss_pred hCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhc-cCccee-cHHHH
Confidence 63222212222333455555555555677888888888765543211 11 12344433332 222222 34445
Q ss_pred HHHHHHHHhhCCccccCCh-hHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC
Q 000050 2450 VLVFATFLRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD 2528 (2622)
Q Consensus 2450 ~~~L~~~l~~~~~~i~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~ 2528 (2622)
..+|..++. .|...-... -...+++.|+..+.+.++.+++.|.++++.++....-++ +..-...++++++.+.+.
T Consensus 1506 l~~l~~i~e-~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~ 1581 (2102)
T PLN03200 1506 LQALVNILE-KPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIG 1581 (2102)
T ss_pred HHHHHHHHh-CcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCC
Confidence 556655543 343322111 134578888999999999999999999998877653221 123356899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhCchhhhh
Q 000050 2529 SSEVRRRALSALKSVAKANPSAIMV 2553 (2622)
Q Consensus 2529 s~dvr~~a~~~l~~~a~~~~~~v~~ 2553 (2622)
+...|+.|+.+|......-|..|..
T Consensus 1582 ~~~~~~~A~~aL~~~~~~w~~~v~~ 1606 (2102)
T PLN03200 1582 ILSLQQRAVKALESISLSWPKAVAD 1606 (2102)
T ss_pred ChhHHHHHHHHHHHhhcccHHHHHH
Confidence 9999999999998777666555543
No 11
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=7e-25 Score=286.58 Aligned_cols=614 Identities=18% Similarity=0.231 Sum_probs=448.5
Q ss_pred hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh-hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
...+...+...+.+++|..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+.++-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 346677777888899999999999999999998873 3445567888899999999999999999999999998877777
Q ss_pred hhhhhHHHHHHhcccC---------C------------chhHHHHHHHHHHhhhccccccchhhhhhcCC-------Cch
Q 000050 2000 AIDEIVPTLLHALEDD---------Q------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~---------~------------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~-------~~~ 2051 (2622)
...+++..|++.|..+ + ..++.+..++++|+-.++...|.|+.++++-. ..-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 7778888888877321 1 12568899999999999999999999998632 122
Q ss_pred HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhc---cChhcHHHHHHHHHhhcCCCChhH
Q 000050 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2622)
Q Consensus 2052 ~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~---~~~~~l~~ll~~Ll~~l~d~~~~v 2128 (2622)
.++..++.|++-+|..+.||+++++|.|.++-.|++..++.++...|+.++.. +-+.++++++.+|+..+.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 46788999999999999999999999999999999999999999999999763 234779999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhh
Q 000050 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~ 2207 (2622)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||++|-.+...+.+-+-+.. ...+
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~------------d~~~--- 1120 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC------------DVTN--- 1120 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------ccCC---
Confidence 9999999999998765 45788999999999999999999999998877766654332110 0000
Q ss_pred hhhhcCCccccccCCCCcCchhhHHHHH-HHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCH
Q 000050 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2622)
Q Consensus 2208 ~~~~~~~~~~l~g~~~~~~l~~ilp~ll-~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2622)
|-...+.+..++|.++ +|+++..+++|..+..++.++++..| ..++||.+.+++-|++..++-++.
T Consensus 1121 ------------~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1121 ------------GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred ------------cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 0000134566889887 68888899999999999999999998 799999999999999988775333
Q ss_pred hhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHH------HHHHHhc--ccChhhHHHHHHHhh
Q 000050 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA------LGKLSAL--STRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~a------Lg~L~~~--~~~~~~ll~~Ll~~l 2358 (2622)
-.-..++.+.+.=.+. -++.|..+++. ++.++.+ ...+..++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea-----------------------lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA-----------------------LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH-----------------------HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2222233321111000 02333343332 2222221 123557788888888
Q ss_pred hcC-CHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhh
Q 000050 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2622)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2622)
+.+ .-+.|.++...+.-++..+|..+ .||.++++..+...+.|+++.+|+..|.++|.|++.-.++...+++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 764 34567777788888888899888 6899999999999999999999999999999999999988999999988776
Q ss_pred cCCCCchhhH-hHHHHHHHHHhhCCcccc---------------------------------------CChhHHHHHHHH
Q 000050 2438 ASSPSWAARH-GSVLVFATFLRHNPSAIS---------------------------------------MSPLFLSILDRL 2477 (2622)
Q Consensus 2438 ~~~~~~~~r~-~~~~~L~~~l~~~~~~i~---------------------------------------~~~~~~~i~~~l 2477 (2622)
+..+....+. .+..+.+ +.+++++.+. .+-+..+++..+
T Consensus 1324 ~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~i 1402 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLI 1402 (1702)
T ss_pred HhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHH
Confidence 5433332221 1222221 3322221110 011233344444
Q ss_pred Hhhh-ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHh
Q 000050 2478 KSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556 (2622)
Q Consensus 2478 ~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~ 2556 (2622)
|... .++.+-+|..++.++..+........|. .++......+..++++..++.+.--+.++......+.+.+....+
T Consensus 1403 ceni~nn~~w~lr~q~Akai~~~a~~~sss~~~--p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1403 CENITNNESWKLRKQAAKAIRVIAEGLSSSAPI--PVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMS 1480 (1702)
T ss_pred HHHhccchHHHHHHHHHHHHHHHcccccccCCh--HHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhch
Confidence 5444 4445788888988888776655443221 456777788888999999999999999999888777666655555
Q ss_pred hHHHHHHhhhcCCcchhhchhHHHHHHHhcccc
Q 000050 2557 LFGPALAECLKDGSTPVRLAAERCAVHAFQLTR 2589 (2622)
Q Consensus 2557 ~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~~ 2589 (2622)
.+.-..+......+.-.|--+..+....++...
T Consensus 1481 si~~A~~~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1481 SIEHAVMEEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 555555555554444444444444455554444
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-25 Score=270.82 Aligned_cols=728 Identities=16% Similarity=0.264 Sum_probs=485.9
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCCh--hHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
-.+++.+|..|-.-|.++.. ..+..++..|-..+.|++. ..|.+... .|...+.
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~ 66 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLT 66 (859)
T ss_pred cCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhc
Confidence 35678899999988888764 3445555555555554432 23322111 1233445
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~ 1665 (2622)
.++++.+....+-+-.+-. +.. ..+-..+...|..+.|..+..|+.|++.++.. ++...++++++.+...
T Consensus 67 akd~~~k~~~~qRWl~l~~------e~r---eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n 137 (859)
T KOG1241|consen 67 AKDPERKQQYQQRWLQLPA------EIR---EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN 137 (859)
T ss_pred cCCHHHHHHHHHHHHcCCH------HHH---HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence 5566666655554433221 112 23555667788889999999999999999984 3444789999988888
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchhHH----HhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHH--h
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--Q 1737 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~--~ 1737 (2622)
..++.+..++.++.+++|.++....++.+ ..++-.+++.... ++..+|-+++.++..--...+..|..-.+ .
T Consensus 138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 77776666888999999999999888755 4566677776654 57889988888877655555555543322 3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch----hhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccc
Q 000050 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2622)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~----i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~ 1813 (2622)
++.........++..|+.+|+.++-.++..|-... .+.+++.....+++++..+...+++.-..+..
T Consensus 218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--------- 288 (859)
T KOG1241|consen 218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--------- 288 (859)
T ss_pred eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---------
Confidence 67777777778889999999999998887654331 12233333344444444444333333222210
Q ss_pred cccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHH
Q 000050 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK----TLKEIMPVLMNT 1889 (2622)
Q Consensus 1814 ~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~----~l~~~l~~ll~~ 1889 (2622)
.. .+. +++.=...-.+.|. --+.-++.++|.
T Consensus 289 -----------------EE-iD~---------------------------~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 289 -----------------EE-IDL---------------------------AIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred -----------------HH-HHH---------------------------HHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 00 000 00000000001110 011223345555
Q ss_pred HHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1890 LISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1890 L~~~L~-------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
|++.|. +.+|..-..|..||.-+.+..|+.++|.++|++.+.++++++.-|..+..++|.++..-.+..+.+.
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 555554 2457788899999999999999999999999999999999999999999999999987777888999
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh-----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccc
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~-----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~il 2037 (2622)
..+.+|.+...+.|+.--||+.++.+|+++.+....... ...++.+++.|.++.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP--------------------- 462 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP--------------------- 462 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc---------------------
Confidence 999999999999999999999999999999877653222 222333333333321
Q ss_pred cchhhhhhcCCCchHHHHHHHHHHHHhC---------CChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh
Q 000050 2038 PHILPKLVHLPLSAFNAHALGALAEVAG---------PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE 2108 (2622)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~aL~sLa~~~g---------~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~ 2108 (2622)
.+......++-+|++.+. +...|++..|+..|+..-.-.+
T Consensus 463 ----------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--------------------- 511 (859)
T KOG1241|consen 463 ----------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--------------------- 511 (859)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc---------------------
Confidence 223334566666665321 1233455555555554431110
Q ss_pred cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc---------CCC----hhHHHHHHH
Q 000050 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS---------DSD----STTVAAAWE 2175 (2622)
Q Consensus 2109 ~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~---------d~d----~~V~~~a~~ 2175 (2622)
-.+...|.+|..+|+.+.++++.+..+.+..+......-++ -.| .++...-+.
T Consensus 512 --------------gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 512 --------------GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred --------------cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 12234555555555555555554444333332222222111 001 112222222
Q ss_pred HHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-CCHHHHHHHHHHHH
Q 000050 2176 ALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLG 2254 (2622)
Q Consensus 2176 aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~ 2254 (2622)
.|..+.++.+. ..+.....++..|++.+.+ ++..+.+.|..+++
T Consensus 578 ~Lq~i~rk~~~-----------------------------------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~ 622 (859)
T KOG1241|consen 578 TLQSIIRKVGS-----------------------------------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVS 622 (859)
T ss_pred HHHHHHHHccc-----------------------------------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 33332222211 1223445577777777776 45667889999999
Q ss_pred HHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHH
Q 000050 2255 ELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSS 2332 (2622)
Q Consensus 2255 ~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~ 2332 (2622)
.++...| ..|..|++.+.+.|.+.|+...+..|..++....|.+++.++..+.||...+.+.++++|+++ +++||-.
T Consensus 623 tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 623 TLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 9999999 799999999999999999766678899999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHH-HhcccChhhHHHHHHHhhhcC-----C----------HhHHHHHHHHHHHHHhhcCCC----CChHHHHHH
Q 000050 2333 AALALGKL-SALSTRVDPLVGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGKS----VSSAVKIRV 2392 (2622)
Q Consensus 2333 Aa~aLg~L-~~~~~~~~~ll~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~~----~~~~~~~~i 2392 (2622)
...++|.+ ..++.++++|+..++..++.. | .++|+++++|...+++..+.. ...++.+.|
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I 781 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHI 781 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHH
Confidence 99999999 456788999988877666421 1 578999999999999987732 235899999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCch
Q 000050 2393 YSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDG 2425 (2622)
Q Consensus 2393 ~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2622)
+.++...-.++ ++.+...++..||.|+..+|..
T Consensus 782 ~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 782 ISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccc
Confidence 99998877665 4778889999999999999864
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=6.4e-22 Score=277.93 Aligned_cols=1371 Identities=15% Similarity=0.116 Sum_probs=777.7
Q ss_pred HhHHHHhcCC--CHHHHHHHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000050 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYP----------DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2622)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~~la~~~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2622)
..+++.|.+. +...|+.+...|..+.+..+ +.++.++..|. ..+..+|.-++.+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--------------sg~~~vk~nAaaa 81 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--------------SGTLGAKVNAAAV 81 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--------------CCCHHHHHHHHHH
Confidence 4556666544 56677777777766665443 34444444442 1234567666667
Q ss_pred HHHhhhh-------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhc-cch------hhhhHHHHHHHhcCC
Q 000050 1201 LHSAADV-------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKK 1266 (2622)
Q Consensus 1201 l~~~~~~-------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g-~~~------~~~llp~~~~~l~~~ 1266 (2622)
+..++.. .....++.++ ..+.+.+.+.|..+..++..+..... ++. ....+|.+...+...
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 7666543 1112223333 33455578899998888877644321 111 144567777777653
Q ss_pred CCChhhhhhhhhHHHHHHHHHhhhhccCCcc-h-HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch-----HHHH
Q 000050 1267 ASDEEKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLV 1339 (2622)
Q Consensus 1267 ~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~-v-~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~-----~~~i 1339 (2622)
.+ .+..+++.++..+..|+.+-+..... + ...++.++..++++++.+|..++.++..++....+.. ...+
T Consensus 157 sk---~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaV 233 (2102)
T PLN03200 157 NK---QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAV 233 (2102)
T ss_pred ch---hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 22 22235566666666777543221111 1 1257889999999999999999887766553322111 2357
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--ccchhhhcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHH
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADR--------NSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~l~~~--------~~~~~R~~al~al~~La~~ 1409 (2622)
+.+++.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+++... .+...++.|+.+++.++.+
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 7788877655556789999999999986421 11111234566666666532 1233467788888888864
Q ss_pred hcccchhHHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHH
Q 000050 1410 LGRLFEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMS 1449 (2622)
Q Consensus 1410 ~~~~~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~ 1449 (2622)
... +-+++. .+.+.+.+++.++++. +.+.+..++..++.
T Consensus 314 ~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 314 MSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred chh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 322 111111 1123344444444333 24444445443322
Q ss_pred hhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000050 1450 QLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1450 ~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2622)
+..-. ......+.++..+...+-..+..++..|..++.+..+....- -...+|.|+++|.+++..+|+.|+++|+.
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAI 472 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21100 012344556666666667888999999999887654432221 13468999999999999999999999999
Q ss_pred HhhhcCC-h-hH--HhHHHHHHhhcCCCChhHH-HHHHHHHhccccc-cCChhh-hhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1526 VGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN-TVDAPS-LALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1526 l~~~~~~-~-~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~-~~~~~~-l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
++..-.+ . .+ ...+|.|.+.+..++..++ +|+.++.+..... ++..-. -...+|.|...+++.+++.+..++.
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9863221 1 11 4678999999988888777 5777766532211 111111 1246788888899989999999999
Q ss_pred HHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhhhcCC
Q 000050 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNS 1671 (2622)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-------~~~ll~~Ll~~L~~~~~ 1671 (2622)
++.++... ++. ..++.+..++..+++.++..+.++++.+......+. ....+|.|.+.+.++.
T Consensus 553 AL~nLi~~-~d~--------~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs- 622 (2102)
T PLN03200 553 TLTKLVRT-ADA--------ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK- 622 (2102)
T ss_pred HHHHHHhc-cch--------hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-
Confidence 99999764 332 134566677888889999999999999877444321 2457888888887664
Q ss_pred hHHHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch-hhhHH-hHHHHHHhh
Q 000050 1672 NVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDG 1745 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f-~p~l~-~ii~~ll~~ 1745 (2622)
...+..++..|+.++..-... ...+.+|.++..+.+.+..++..+..+++.+.......= ..++. .++|++.+.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 557888888888887633221 125678999999999999999999999999997432221 12233 389999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhc--hh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~--~i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde 1822 (2622)
+.+.+.++++.++.++..++..-... .. ...+|.+.+.+.+.+.+.|..++..+..+..+.+ .++
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hhH
Confidence 99999999999999999887643211 11 2367888888888999999999999988875421 000
Q ss_pred cccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHHhhC--------hhhHHHHHHHHHHHHHH
Q 000050 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVANT--------PKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~a--A~~~l~~l~~~~--------p~~l~~~l~~ll~~L~~ 1892 (2622)
.....+...| .+.+|...++..+.+.-.. |++++..++... |....--.|.-+..++.
T Consensus 771 ------~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~ 838 (2102)
T PLN03200 771 ------VLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR 838 (2102)
T ss_pred ------HHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence 0000111111 3344444444444444444 888888888631 22222233455677888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh----ccch--hhhHHHHHh-hhcCCCChhhHHhHHHHHHHHHHhhChhhH-----H
Q 000050 1893 SLASSSSERRQVAGRALGELVRKL----GERV--LPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----L 1960 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~----~~~~--l~~llp~L~-~~L~d~~~~vR~~a~~~L~~li~~~~~~~l-----~ 1960 (2622)
++.+.++.+...|+..|..+|+.- |+-+ .+..+..+- +.+++.+.++|.+.+..|-.-.+.+....+ .
T Consensus 839 ~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2102)
T PLN03200 839 CLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDES 918 (2102)
T ss_pred HHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhh
Confidence 889999999999999999998642 2211 122333332 346678899998876655443333322211 2
Q ss_pred HhHHhHHHHHHHHhcCCc------HHHHHHHHHHHHH-HHHHhC------h-hhh-hhhHHHHHHhcccCCc-------h
Q 000050 1961 SFMDELIPTIRTALCDSI------LEVRESAGLAFST-LFKSAG------M-QAI-DEIVPTLLHALEDDQT-------S 2018 (2622)
Q Consensus 1961 ~~l~~ll~~l~~~L~d~d------~~VR~~A~~al~~-l~~~~g------~-~~~-~~ilp~Ll~~L~~~~~-------~ 2018 (2622)
.|+..++..+..++...+ .+++... ..... .....+ + ... ..+-=+|+..+.+.+. .
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e 997 (2102)
T PLN03200 919 GYLKLLIQALVDMLKQNSKKESLSIEIQTPR-GFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIME 997 (2102)
T ss_pred ccHHHHHHHHHHHHhccCcccccceeecCCc-cchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhh
Confidence 356667777766664321 1111000 00000 000000 0 011 1122244444433322 1
Q ss_pred hHHHHHHHHHHhhhccccccchhhhhhcCCC-chHHHH-HHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHH
Q 000050 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAH-ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKE 2096 (2622)
Q Consensus 2019 ~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~-aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~ 2096 (2622)
.++++++.+-+..+... | .-.-... ..+... -|+.|.....-...|-.-.++|.|...+++++.-.|-.+..
T Consensus 998 ~~~~~~~~~~~~~~~~~--~----q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 1071 (2102)
T PLN03200 998 AGGIEVLTEKLASYTSN--R----QAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQ 1071 (2102)
T ss_pred cccHHHHHHHHHhhccC--c----cccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHH
Confidence 34555555433221110 1 1000000 001111 12222111111122334456777777777666666777777
Q ss_pred HHHHhhhccCh------------hc-------HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHH
Q 000050 2097 AAETVTLVIDE------------EG-------VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIST 2157 (2622)
Q Consensus 2097 al~~l~~~~~~------------~~-------l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~ 2157 (2622)
++..++..-+. .+ .+.=++.|..... +..-+|.--..++..+|+.-..-......+.++.
T Consensus 1072 ~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~ 1150 (2102)
T PLN03200 1072 ALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSE-EFSLVRNPDQVALERLFRVEDIRVGATARKAIPL 1150 (2102)
T ss_pred HHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHH-HhhccccHHHHHHHHHhhhhhhcchHHHHHHHHH
Confidence 77755442111 00 0111222222221 1111222223345556655444455566788888
Q ss_pred HHHHhcCCC--hhHHHHHHHHHHHHHhhcCcc--ch--hhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCc------
Q 000050 2158 LIVLLSDSD--STTVAAAWEALSRVVASVPKE--VQ--PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK------ 2225 (2622)
Q Consensus 2158 L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~--~l--~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~------ 2225 (2622)
|+.+++..+ +.+|..|...|..+.+..... .+ ...++.+...+.............. .+.-+...+
T Consensus 1151 Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~E--lL~IL~~~~e~~~~l 1228 (2102)
T PLN03200 1151 LVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASE--LLRILFSSPELRRHE 1228 (2102)
T ss_pred HHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHH--HHHHHhCCHHHHHHh
Confidence 888888544 467888888888887654421 10 0111112121111100000000000 000000000
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhc
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2622)
.-...+..+...|..|+.+.|..|+.+|..+...- ..+... .+.++||+..+... ....+..++.+|-.+++.-
T Consensus 1229 ~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~---~~~~~~~a~~ai~pLv~ll~~~-~~~~~~~a~~ALvkL~kd~ 1304 (2102)
T PLN03200 1229 SAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE---HIRDSELARQAVQPLVEMLNTG-SESEQHAAIGALIKLSSGN 1304 (2102)
T ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh---hhhhhhhhhccchHHHHHhccc-chhhhHHHHHHHHHHHcCC
Confidence 01125567777888899999999999999998652 222222 35677888877654 4566778888887777532
Q ss_pred CCCccCchH-----HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhc-----ccChhhHHHHHHHhhhcCCHhHHHHHHHH
Q 000050 2304 GIALKPFLP-----QLQTTFIKCLQDS-TRTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQVSDAGIREAILTA 2372 (2622)
Q Consensus 2304 ~~~l~p~l~-----~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~-----~~~~~~ll~~Ll~~l~~~d~~vr~~~l~A 2372 (2622)
.. +.-.- ..+..+++.|++. +..++..++.....+... .+--...++.|++.+.+....+++.++.+
T Consensus 1305 is--~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~v 1382 (2102)
T PLN03200 1305 PS--KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCA 1382 (2102)
T ss_pred CC--hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHH
Confidence 11 11111 3455677778876 567777666665543211 11122467778888776445558999999
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH-----HHHHHHhhcCCCCchhhH
Q 000050 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD-----LLQELLNLASSPSWAARH 2447 (2622)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~r~ 2447 (2622)
|..++......-...-.+.+++++. .+-..++.....|..+|-+++..-|. ...+ .+..++-.+.......+.
T Consensus 1383 Ld~Lc~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~~~~-v~~Emv~~G~~~kllllLQ~c~~~lke 1460 (2102)
T PLN03200 1383 LDRLLDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKDRPP-CKLDMVKAGIIERVLDILPEAPDSLCS 1460 (2102)
T ss_pred HHHHhcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCCChH-HHHHHHHhCHHHHHHHHHHcCCHHHHH
Confidence 9888754211100011122334444 33334555667778888888744433 2222 222221111112222333
Q ss_pred hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcC
Q 000050 2448 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH 2526 (2622)
Q Consensus 2448 ~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~ 2526 (2622)
.+.-+..++..+++.-..+.+..-+.+.+...+.++- ......|..++-.+++....... ..-.....+.+++..+.
T Consensus 1461 -kAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~-~~~~~~~~i~~Li~lL~ 1538 (2102)
T PLN03200 1461 -AIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLAS-LTLTPSQAIEPLIPLLE 1538 (2102)
T ss_pred -HHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhh-hhcCccchHHHHHHHHc
Confidence 3333344555555432223333333444444454442 34456689999988887543211 11234678999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCchhhhh--hHhhHHHHHHhhhcCCcchhhchhHHHHH
Q 000050 2527 DDSSEVRRRALSALKSVAKANPSAIMV--HVALFGPALAECLKDGSTPVRLAAERCAV 2582 (2622)
Q Consensus 2527 d~s~dvr~~a~~~l~~~a~~~~~~v~~--~l~~l~p~l~~~~~~~~~~vk~aae~a~~ 2582 (2622)
+.+..+++.|..+|..+..+- .++. .-...++||.+.+...+...|..|-+|+.
T Consensus 1539 s~~~~vqe~aa~ll~~l~~~~--~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~ 1594 (2102)
T PLN03200 1539 SPSQAVQQLAAELLSHLLAEE--HFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALE 1594 (2102)
T ss_pred CCcHHHHHHHHHHHHHHhcch--HHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999999999999998653 3333 23668999999999988888888877773
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.3e-23 Score=248.63 Aligned_cols=645 Identities=14% Similarity=0.158 Sum_probs=433.4
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCccccchhh-----------------hee-eecCCchHHHH
Q 000050 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTS-----------------LWI-AVHDPEKSVAE 1115 (2622)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~ 1115 (2622)
+..++.+|.++ .+|||+++|..++.+|.+.... ++..+...+.. +.+ +-|..+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~---dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSG---DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccc---cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34577788877 6999999999999999886422 22222222222 222 23334444444
Q ss_pred HHHHHHHhcCCCCCCCh-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000050 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2622)
Q Consensus 1116 la~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2622)
-....|.....+.++++ .-.+..|.++.+..-.+||+.+++++. +-| ..|++++..+.... ++ ..+..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 46788998777777666 456789999999999999999999975 233 36666666665432 22 23456
Q ss_pred hhhHHHHHHHHhhhhhCCCChh----HHHHHHHhhhcC-CCCHHHHHHHHHHHHH-HHHHhc----cchhhhhHHH-HHH
Q 000050 1193 GRQGIALALHSAADVLRTKDLP----VIMTFLISRALA-DTNADVRGRMLNAGIM-IIDKHG----RDNVSLLFPI-FEN 1261 (2622)
Q Consensus 1193 ~R~~~~~al~~~~~~~~~~~~~----~i~~~li~~~l~-d~~~~VR~~a~~a~~~-~i~~~g----~~~~~~llp~-~~~ 1261 (2622)
++..+..+++|.++.-.++++. .++..++.+++. .++..||.+++.|+.. .+-..| ...++.+|.+ ++.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 7778889999999877775542 233334445654 5788999999999876 222222 2345666665 444
Q ss_pred HhcCCCCChhhhhhhhhHHHHHHHHHhh-hhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh---------
Q 000050 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--------- 1330 (2622)
Q Consensus 1262 ~l~~~~~~~~~~~~vr~~~~~~~~~la~-~l~~~~~~v~-~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~--------- 1330 (2622)
+-.. +.++..+++.++..+-. |+.--.++++ .+......++++++++|...+.+.-+.+...
T Consensus 230 tq~~-------d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQGN-------DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 4332 34566777666655542 2211123333 3445556788999999988777654433321
Q ss_pred -hcc-----------chHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCC
Q 000050 1331 -MQD-----------EAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2622)
Q Consensus 1331 -~~~-----------~~~~~i~~Ll~~L~~~------~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~ 1392 (2622)
.++ ...+.+|.++..|.++ ++|...++|+.||...++..|...+. +++.++.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 110 1246788999988863 47999999999999999999999887 6999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----h-HHhhHHHHHhh
Q 000050 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VKLVLPSLLKG 1466 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~-v~~ilp~Ll~~ 1466 (2622)
|+.|++|+++||.+.++.. ....+|+.+.+|.+...+.|+.-.|.+.+..|++++++.+... + +.......+.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 9999999999999998765 4567899999999999999999999999999999998865432 2 23333344444
Q ss_pred ccCCChhhHHHHHHHHHHHHhh-------CchhhhhhhhhhHHHHhhhh--cCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1467 LEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~la~~-------~p~~l~~~L~~ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
+.+. .+....+++..-.++.+ .+..+.+.++.|+..|++.. .+.+...|.++..+|+.+....++.. .+
T Consensus 460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-~~ 537 (858)
T COG5215 460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-SD 537 (858)
T ss_pred hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-HH
Confidence 4432 22223333444344333 24456667777887777653 35566789999999999988765421 11
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
++-.+..... .+..+|+..+... ...-+... -.++....+..+..+... .+.++.+.-
T Consensus 538 ~~a~~~~~~~---~kl~~~isv~~q~--l~~eD~~~---------------~~elqSN~~~vl~aiir~--~~~~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTS---KKLDECISVLGQI--LATEDQLL---------------VEELQSNYIGVLEAIIRT--RRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhhh--hhhHHHHH---------------HHHHHHHHHHHHHHHHHh--cCCCcccHH
Confidence 1111111111 1112233322210 00000000 124555566666666664 345788888
Q ss_pred hhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH
Q 000050 1618 GLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~-~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~ 1693 (2622)
+++|..+++.+.... ..+-.....+++++...+|+. |.+.++|.+.+.+...+ ..+-..+..-++.+...+|.++
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d-~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTD-RFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchh-HHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999998764 456678889999999988865 78899999999884433 3344444555788999999884
Q ss_pred H---HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhc
Q 000050 1694 F---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2622)
Q Consensus 1694 l---~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2622)
. +.++..+.+.++++ +.++|+..+++|++++..+|..|.+|+..++-.+.+.-
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3 67788888888875 67899999999999999999999999999887766553
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=5.6e-21 Score=250.58 Aligned_cols=615 Identities=17% Similarity=0.287 Sum_probs=435.2
Q ss_pred hHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcc---hHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhh
Q 000050 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK---VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2622)
Q Consensus 1255 llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~---v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~ 1331 (2622)
+...++..+.. ...+.|.+.++|+-.+.+|+....+. .++|...+...|.|.++-+|..+++.++- +...
T Consensus 819 ~~~~l~~~~~s------~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlgl-VYel 891 (1702)
T KOG0915|consen 819 ILKLLDTLLTS------PNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGL-VYEL 891 (1702)
T ss_pred HHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceE-EEec
Confidence 34445554443 34578999999999999998654332 47788999999999999999999999974 3444
Q ss_pred ccc--hHHHHHHHHHHHhcCCC---------------------hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh
Q 000050 1332 QDE--APTLVSRLLDQLMKSDK---------------------YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388 (2622)
Q Consensus 1332 ~~~--~~~~i~~Ll~~L~~~~~---------------------~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~ 1388 (2622)
++. ...+++.|+++|..++. .+........|..++..+|...+. |.+| +..+
T Consensus 892 gd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLV-YKFM----~LAn 966 (1702)
T KOG0915|consen 892 GDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLV-YKFM----QLAN 966 (1702)
T ss_pred CCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHH-HHHH----HHhh
Confidence 432 36789999999986431 112345667788888888866553 2333 3445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhhHHHHHh
Q 000050 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLK 1465 (2622)
Q Consensus 1389 ~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~ 1465 (2622)
+...|+.|.||.++|+.+++..|..++||+.+++|-+...--||+..|+++.....+.+... .-+.....++..|+.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 55579999999999999999999999999999999999999999999999998888888654 334456889999999
Q ss_pred hccCCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHh
Q 000050 1466 GLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2622)
Q Consensus 1466 ~L~~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~ 1544 (2622)
++.+..||+|.++|.+|..+..+.| .++...+|+++..++++++|-+..||++|-.+...+++.+-
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v------------- 1113 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV------------- 1113 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 9999999999999999999998765 46788899999999999999999999999998888876431
Q ss_pred hcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh-hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHH
Q 000050 1545 GLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR-GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2622)
Q Consensus 1545 ~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~ 1623 (2622)
.+.|++..+. ....++.++|++.. ++-+.-.++|+.+...+..+.+.. ++.+.||.+.++|.
T Consensus 1114 r~~d~~~~~~---------------~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss--g~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1114 RICDVTNGAK---------------GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS--GKELKPHFPKLIPL 1176 (1702)
T ss_pred hhcccCCccc---------------HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc--hhhhcchhhHHHHH
Confidence 2223322111 12334556777664 444667899999999999999854 46899999999999
Q ss_pred HHHHhcCCCHHHHHH-HHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHH
Q 000050 1624 VKKVLVDPIPEVRSV-AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDII 1702 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~-a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~ 1702 (2622)
+......-.+.|-.. +.++. +.+ .+.++.+-...... .-..+++...+.......+++++|.+.
T Consensus 1177 ll~~~s~lE~~vLnYls~r~~-------~~e--~ealDt~R~s~aks------spmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1177 LLNAYSELEPQVLNYLSLRLI-------NIE--TEALDTLRASAAKS------SPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred HHHHccccchHHHHHHHHhhh-------hhH--HHHHHHHHHhhhcC------CcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999988766665332 22221 110 11111111111000 123456777777777788899999999
Q ss_pred HhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHh
Q 000050 1703 RNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2622)
Q Consensus 1703 ~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~ 1781 (2622)
+..... .-..|.++...+..+...+|.+..||..+.+..++.++.|.++.+|.+...|+..++..-+++....++..+.
T Consensus 1242 el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1242 ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred HHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 988654 6678999999999999999999999999999999999999999999999999998887655544444443333
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR 1861 (2622)
.....+....+..++..+..+..+. .+.+ ..+...+++.+|....+......
T Consensus 1322 ~~~l~k~es~~siscatis~Ian~s---------------------------~e~L-kn~asaILPLiFLa~~ee~Ka~q 1373 (1702)
T KOG0915|consen 1322 ADLLGKDESLKSISCATISNIANYS---------------------------QEML-KNYASAILPLIFLAMHEEEKANQ 1373 (1702)
T ss_pred HHHhccCCCccchhHHHHHHHHHhh---------------------------HHHH-HhhHHHHHHHHHHHHhHHHHHHH
Confidence 2221111111122222222222110 1111 12445678888877766644444
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCC
Q 000050 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1862 ~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~ 1936 (2622)
..=-++|..++.....+++-+.+.++..++.... +..+..|..++..+..++..... ++.-.+.+.+...+....
T Consensus 1374 ~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi 1453 (1702)
T KOG0915|consen 1374 ELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI 1453 (1702)
T ss_pred HHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc
Confidence 5556778888877667777677777777666655 45589999999988877765433 234455666677777777
Q ss_pred hhhHHhHHHHHHHHHHhh
Q 000050 1937 ASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~ 1954 (2622)
++-+.....++......+
T Consensus 1454 wdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1454 WDGKEEILKALASAFEAG 1471 (1702)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 777777666666554433
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.5e-20 Score=222.76 Aligned_cols=761 Identities=17% Similarity=0.235 Sum_probs=487.1
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.++..+..|..+.+-|..=+..++. |.++.++|.++...-++
T Consensus 372 vKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD------------------------------------- 414 (1172)
T KOG0213|consen 372 VKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED------------------------------------- 414 (1172)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc-------------------------------------
Confidence 4566777888887777655544432 34555666554432221
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L 1666 (2622)
..|......+..+...+++ -..||...++-.+..++-|++...|...-+.++.|+...|=. ..+..+--.+
T Consensus 415 ----qerhllVkvidriLyklDd--lvrpYVhkILvViepllided~yar~egreIisnLakaaGla---~mistmrpDi 485 (1172)
T KOG0213|consen 415 ----QERHLLVKVIDRILYKLDD--LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA---TMISTMRPDI 485 (1172)
T ss_pred ----hhhhhHHHHHHHHHHhhcc--cchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH---HHHHhhcCCc
Confidence 2233333444444443333 457888888777778888999999999999999999988732 2222221222
Q ss_pred hhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1667 ~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
.+.+ .-+|...+.+++.++.++|.. .++|.+...|.+. +|.-|..++.+...++...|-...||+..++..+-.+
T Consensus 486 dn~d-eYVRnttarafavvasalgip---~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 486 DNKD-EYVRNTTARAFAVVASALGIP---ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred cccc-HHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 2333 337888888899999999865 5666677777776 9999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhh---chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000050 1746 LADENESVRDAALGAGHVLVEHYAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~---~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde 1822 (2622)
+.|+...||..+..++..+.+..++ +..+.++..|.++. |+.
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi-------r~h---------------------------- 606 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI-------RQH---------------------------- 606 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-------HHc----------------------------
Confidence 9999999998888888777665433 33444444443332 111
Q ss_pred cccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHH-HHHHHHHHHHHHhcCCCHHH
Q 000050 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNTLISSLASSSSER 1901 (2622)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~-~l~~ll~~L~~~L~s~~~~~ 1901 (2622)
-..+-.+-+.+++.++.-....... |...++-.++.-+.+++++.
T Consensus 607 ----------------------------------rgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeem 652 (1172)
T KOG0213|consen 607 ----------------------------------RGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEM 652 (1172)
T ss_pred ----------------------------------cChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHH
Confidence 1111112222333333322222222 33456677778889999999
Q ss_pred HHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1902 RQVAGRALGELVRKLGER---VLPSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1902 R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
+......+..++..-|-. ....++|.+...+- -....-|+ ....-.+++...|. ..++..+..-
T Consensus 653 kkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykq-lv~ttv~ia~KvG~-------~~~v~R~v~~ 724 (1172)
T KOG0213|consen 653 KKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQ-LVDTTVEIAAKVGS-------DPIVSRVVLD 724 (1172)
T ss_pred HHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhh-HHHHHHHHHHHhCc-------hHHHHHHhhh
Confidence 999999999999876643 23444554443211 11112222 12223334444443 3345555566
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhhhh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC
Q 000050 1974 LCDSILEVRESAGLAFSTLFKSAGMQAIDE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2622)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~ 2048 (2622)
+.|..+..|...+++...+....|...+++ ++..++..+.....
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt------------------------------- 773 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT------------------------------- 773 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-------------------------------
Confidence 678888899999999998888777644432 22222222211110
Q ss_pred CchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhH
Q 000050 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASI 2128 (2622)
Q Consensus 2049 ~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~v 2128 (2622)
........++.+...+|....||+++|+..++..|+++.+.+|..++..++.+... ++....
T Consensus 774 ~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~V-------------lktc~e----- 835 (1172)
T KOG0213|consen 774 EDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKV-------------LKTCGE----- 835 (1172)
T ss_pred chhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-------------HHhccH-----
Confidence 00112245566666677777888888888887777777777777766655544321 111100
Q ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhh
Q 000050 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2622)
..+..| +=-.|...++...++|....+.|+..++...+-.-
T Consensus 836 ----------------e~~m~~---lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k-------------------- 876 (1172)
T KOG0213|consen 836 ----------------EKLMGH---LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK-------------------- 876 (1172)
T ss_pred ----------------HHHHHH---hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 011111 12234556777788888888888877765432110
Q ss_pred hhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChh-hhhhhhhhhhHHHHHhhcCCCCHh
Q 000050 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-SLKEFVIPITGPLIRIIGDRFPWQ 2287 (2622)
Q Consensus 2209 ~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~-~l~p~v~~i~~~Li~~l~~~~~~~ 2287 (2622)
.-.-++.++|.+.-.|.+....+.++....+|.+++..++- ..+.| ..|.--|+..|... ..+
T Consensus 877 --------------m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkah-kK~ 940 (1172)
T KOG0213|consen 877 --------------MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAH-KKE 940 (1172)
T ss_pred --------------cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHH-HHH
Confidence 00123445566655666777888889999999999876631 12333 34555566777653 678
Q ss_pred hHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHH
Q 000050 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIRE 2367 (2622)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~ 2367 (2622)
+|.++..++|-+.+.+|. ..+..+++..|.-..+..|.-...+++..+..++- -..+|.|++-.+.++..||+
T Consensus 941 iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-hhhhHHHHhhccCchhHHHH
Confidence 999999999999998873 35777888888777777777777777777665432 34789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhH
Q 000050 2368 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 2447 (2622)
Q Consensus 2368 ~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~ 2447 (2622)
.+|+||..+.+..|. ++..|+-.+.++|.+.+.|+|...|..++.++.+++...+.-.....+.+++|.+
T Consensus 1014 GVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~i--------- 1083 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLI--------- 1083 (1172)
T ss_pred hHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHh---------
Confidence 999999999887765 4568999999999999999999999999999999987755433333444444421
Q ss_pred hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCC
Q 000050 2448 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 2527 (2622)
Q Consensus 2448 ~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d 2527 (2622)
+..+-+..|.+-.+...|+..+-..- ....++.-+.+++-|
T Consensus 1084 ------------------------------WpNIle~sPhviqa~~e~~eg~r~~L---------g~~~~~~Y~~QGLFH 1124 (1172)
T KOG0213|consen 1084 ------------------------------WPNILETSPHVIQAFDEAMEGLRVAL---------GPQAMLKYCLQGLFH 1124 (1172)
T ss_pred ------------------------------hhhhcCCChHHHHHHHHHHHHHHHHh---------chHHHHHHHHHhccC
Confidence 11111222222222222332221111 124577788889999
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2528 DSSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2528 ~s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
++..||..-..+.+.+-+...+.+.+++
T Consensus 1125 ParkVR~~yw~vyn~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1125 PARKVRKRYWTVYNSMYHGSQDALVACY 1152 (1172)
T ss_pred cHHHHHHHHHHHHHhHhhcccchhhhcc
Confidence 9999999999999999888777655543
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.8e-20 Score=223.92 Aligned_cols=675 Identities=18% Similarity=0.241 Sum_probs=459.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhcc-
Q 000050 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK- 1293 (2622)
Q Consensus 1216 i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~-~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~- 1293 (2622)
++..|+ -..+..+..|..++..+..-...+|.. ..+.++|++... . -+|.-|+..+-.+..+--.++.
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~------t--LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSP------T--LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCc------c--ccchhhhhHHHHHHHHHHhhccc
Confidence 444442 235667788888888877766667765 356777764321 1 1223355555555555444432
Q ss_pred CCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc
Q 000050 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2622)
Q Consensus 1294 ~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~ 1373 (2622)
..|++..|+--+-..+-+++.-.|...-+.++.+....+ ....+..+-..+. ..|.-+|...+.+.+.+++.+|...
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgip~ 511 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGIPA 511 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCcHH
Confidence 245665554444455556666666655555655554433 1222222222222 2345689999999999999998754
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1374 l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
+.++|+..+.++++|..|+.++.+...++...|...-||+..++..+-.++.|.+..||-.++.++..+++...+
T Consensus 512 -----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 512 -----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred -----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred HhH---HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch---hhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---QLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~---~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
+++ ..++.+|+++.....- ++-..+|.++.+.+|. +...++ .+++-.+.+-.+.++.+.++...+.+.++
T Consensus 587 ygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qc 663 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQC 663 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 865 6778788777653211 1223455666665543 333333 35666666777888888999888888888
Q ss_pred hhhcC-Chh-H-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 000050 1527 GSVIK-NPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1527 ~~~~~-~~~-i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l 1603 (2622)
+..-+ .|. + .+++|.++...- .-|.|+ +.++. +...+.-..+
T Consensus 664 c~t~Gv~~~y~r~dilp~ff~~fw----~rrmA~----------------------------drr~y---kqlv~ttv~i 708 (1172)
T KOG0213|consen 664 CATDGVEPAYIRFDILPEFFFSFW----GRRMAL----------------------------DRRNY---KQLVDTTVEI 708 (1172)
T ss_pred hcccCCCHHHHhhhhhHHHHhhhh----hhhhhc----------------------------cccch---hhHHHHHHHH
Confidence 76554 222 2 455565554421 111111 00111 1111222334
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhhhcCChHHHHHH
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGA 1678 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~r~~a 1678 (2622)
|..+|. +.++..+..-+.|..+..|..++.++..+...+|..-+ ..++..++..++.++.. + ...
T Consensus 709 a~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d-~vm 778 (1172)
T KOG0213|consen 709 AAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-D-SVM 778 (1172)
T ss_pred HHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-h-hhh
Confidence 444443 23555566666788888999999999999988885422 34556666666554432 1 235
Q ss_pred HHHHHHHHHHhch---hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCCChHHH
Q 000050 1679 AQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVR 1754 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~---~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR 1754 (2622)
..+++.+...+|. .++..+...++..++++.+.+|+.++..++.++..+... =...+..+--.+..+|..++++|-
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHH
Confidence 5778888888886 367888888889999999999999999999998766432 012334444567889999999999
Q ss_pred HHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHH
Q 000050 1755 DAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2622)
Q Consensus 1755 ~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~ 1830 (2622)
-..+.|+..|+...+-. .+..++|.+...+.+...++...++.++|.+...-+ +-.+.
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E~v~a---- 920 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------EYVSA---- 920 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------ccCCH----
Confidence 99999999998877533 467799999999999999999999999998853211 11111
Q ss_pred HHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000050 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2622)
Q Consensus 1831 ~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~ 1910 (2622)
..+-++.-.|...+...+..+|++|.+.+|.++..-+. ..++..+++.|...+...|....-+++
T Consensus 921 ---------REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 921 ---------REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 11112322333334555778999999999999986553 134455555666666666666666666
Q ss_pred HHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000050 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1911 ~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~ 1990 (2622)
-+.+.+|+- .++|.|..-...++.+|++|++.+++-+.+..+ +...+|+-.+.|.+..+|.|.|..-|+.|+.++.
T Consensus 986 IVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 986 IVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred hhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH
Confidence 666665543 567888877788999999999999998887765 4556788999999999999999999999888776
Q ss_pred HHH
Q 000050 1991 TLF 1993 (2622)
Q Consensus 1991 ~l~ 1993 (2622)
.+.
T Consensus 1062 Hl~ 1064 (1172)
T KOG0213|consen 1062 HLA 1064 (1172)
T ss_pred HHh
Confidence 663
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-21 Score=238.63 Aligned_cols=515 Identities=22% Similarity=0.307 Sum_probs=383.1
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCC
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~ 1588 (2622)
.|.++.||..-..+.......-++..+..+.|.+-+.++...
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-------------------------------------- 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-------------------------------------- 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch--------------------------------------
Confidence 788888888877777666655444555556665555543211
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhh
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~ 1668 (2622)
+..+|....-..+.++... ...+. -...++..+.+.+..|.+.+|.....|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~--~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDP--RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCc--chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 1233333333344444432 21222 2335788888889999999999999999999887665545555666666665
Q ss_pred cCChHHHHHHHHHHHHHHHHhchhHH--HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1669 ~~~~~~r~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
......|.+++.+++.+..+.|...+ ..++..+.....+.. ...|++++.++......+|..|+||+..++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 34466899999999999998888766 346777777777764 455668999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~ 1825 (2622)
..|..+.||.++..+...++..++..+++.++|.+...+.+..||...++++++|.+.++.+
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999999998899999999999998876532
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 000050 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVA 1905 (2622)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A 1905 (2622)
..+.. ...++++.+-..++|+..+||+++..++..+...-.. +-+..++|.+++++++++..+.. +
T Consensus 287 -----~qLs~-----~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~ 352 (569)
T KOG1242|consen 287 -----KQLSL-----CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-C 352 (569)
T ss_pred -----HHHHH-----HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-H
Confidence 11111 3346777777788999999999999999887763321 22455666677778887633322 2
Q ss_pred HHHHH--HHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh-ChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1906 GRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1906 ~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
...|+ .++..+.+..+.-++|++.+++.+++...+..++..++.+..-. .+..+.+|++.++|.+...+.|+.|+||
T Consensus 353 ~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 353 LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 22222 33344445568899999999999999999999999999988777 6778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC---chhHHHHHHHHHHhhhccccccchhhhhhcC--------CCch
Q 000050 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSA 2051 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~--------~~~~ 2051 (2622)
..++++++.+.+..|...+++.+|.+.+.+.++. .+..+.+.+.+++...+.......+|..... .+..
T Consensus 433 ~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d 512 (569)
T KOG1242|consen 433 AVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD 512 (569)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence 9999999999999999888999999999986643 3467778888888654433333333333211 1111
Q ss_pred HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHH
Q 000050 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2622)
Q Consensus 2052 ~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~a 2097 (2622)
.-...+..+....|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 513 g~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 513 GVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred CeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 2223444455566788999999999999999988887777666554
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.90 E-value=5.4e-18 Score=201.59 Aligned_cols=669 Identities=14% Similarity=0.188 Sum_probs=422.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH----
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF---- 1694 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l---- 1694 (2622)
+-...++.|..+.|+.-..|+..++++++. ++...+++++..+......+.+...++.+...++.++....++.+
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 445566778899999999999999999984 333367888887777776777777778888889999888777544
Q ss_pred HhHhHHHHHhcc--CCChhhHHHHHHHHHHhhhhhCcchhh--hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1695 EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1695 ~~llp~l~~~l~--~~~~~vR~~al~~l~~L~~~~g~~f~p--~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
..++-.+..... .++..+|-+++.++.+-.....+.|.. -...++.......+.+++++..+++.++..++..|-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334444554443 357789988888887744444443321 1233666777777788899999999999888765432
Q ss_pred c---hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHH
Q 000050 1771 T---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2622)
Q Consensus 1771 ~---~i~~-llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il 1846 (2622)
. ..+. +.....+++.+.+.++...+++.-..+... +-+ . ..-...+. ++
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE----------------eid-~----~~e~~~~p-----e~- 307 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE----------------EID-G----EMEDKYLP-----EV- 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----------------Hhh-h----HHHHhhcc-----cC-
Confidence 2 1111 222223344555555555555444333210 000 0 00000000 00
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccchhhh
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERVLPS 1923 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1923 (2622)
+ .. +.. ++ .......+|.++..+.+.=. +.+|.....|..||.-+.+..|+.++..
T Consensus 308 p-----~q--n~~-----------fa---~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p 366 (858)
T COG5215 308 P-----AQ--NHG-----------FA---RAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP 366 (858)
T ss_pred c-----hh--hcc-----------hH---HHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH
Confidence 0 00 000 00 01233455666555544222 3467888999999999999999998888
Q ss_pred HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000050 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2622)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ 2003 (2622)
++..+.+.++.+++..|..+..++|.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+.++.... +++
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p 445 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISP 445 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCc
Confidence 9999999999999999999999999999877778889999999999999999999999999999999997765321 111
Q ss_pred h--HHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCC-chHHHHHHHH----HHHHh---CCChhhhHh
Q 000050 2004 I--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALGA----LAEVA---GPGLNFHLG 2073 (2622)
Q Consensus 2004 i--lp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~-~~~~~~aL~s----La~~~---g~~l~~~l~ 2073 (2622)
. ++... ...+.+ +.+.|. ......+.-. ++++. ..-+.++..
T Consensus 446 ~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ 497 (858)
T COG5215 446 CGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL 497 (858)
T ss_pred cccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence 0 00000 011111 111121 1112222222 22222 233566777
Q ss_pred hhHHHHHHhc--CCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH
Q 000050 2074 TILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2622)
Q Consensus 2074 ~il~~Ll~~l--~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~ 2151 (2622)
.|+..|+..- ..++...|..+..+++.++.-..+ .+.+++..+.....+ .+
T Consensus 498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~~~~a~~~~~~~~--------------------------kl 550 (858)
T COG5215 498 AILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVSDILAGFYDYTSK--------------------------KL 550 (858)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHH--------------------------HH
Confidence 7777777653 344556677777777777653322 122222111111100 01
Q ss_pred HHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2152 PNMISTLIVLLSDS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2152 ~~il~~L~~~l~d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
.+.++.+-..+.-. .+++..+-...|..+++..+.+.- ..-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-----------------------------------~v~ 595 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-----------------------------------DVE 595 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------------cHH
Confidence 11111111111111 123444444444444444332110 111
Q ss_pred hhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCC
Q 000050 2228 QPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA 2306 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~ 2306 (2622)
..++..|++.+.+. ..........+|+.+....+ +.+..|++.++|.|.+.++.. +..+...+...+|.|.+.++.+
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhh
Confidence 23555666666554 33455667888999988887 789999999999999999654 6778999999999999999999
Q ss_pred ccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhhcC-------C--------HhHHHH
Q 000050 2307 LKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVS-------D--------AGIREA 2368 (2622)
Q Consensus 2307 l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~~~-------d--------~~vr~~ 2368 (2622)
+.+|...+...++++++++ +++++-....++|.++ .++.++.+|+..++-.++.. + ..++..
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 9999999999999999997 8999999999999994 46778899998877666421 1 233444
Q ss_pred HHHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcCchHHHH
Q 000050 2369 ILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCMEDGQLAD 2429 (2622)
Q Consensus 2369 ~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2622)
+..|+-.+........ ..||.-.|+..+-....|+ .+...+++..+||.++..+|..+++.
T Consensus 754 v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~ 818 (858)
T COG5215 754 VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKF 818 (858)
T ss_pred HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhh
Confidence 5555555554443222 2478888888887666665 34555788999999999999866544
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=2.2e-17 Score=197.55 Aligned_cols=712 Identities=16% Similarity=0.176 Sum_probs=441.6
Q ss_pred HHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCCh
Q 000050 1593 KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672 (2622)
Q Consensus 1593 r~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~ 1672 (2622)
|......+..+...+++ -..||...++-....++-|+++..|...-+.+..++...|-.+.-. .+--.+.+.+++
T Consensus 222 rhl~vk~idr~Ly~ldd--l~~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs---~mrpDi~~~deY 296 (975)
T COG5181 222 RHLVVKLIDRLLYGLDD--LKVPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVS---SMRPDITSKDEY 296 (975)
T ss_pred hHhHHHHHHHHHHhccc--ccccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeee---eccCCcccccHH
Confidence 33344444444444333 3467877777777777889999999999999999999888442111 111122333333
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
+|.....+.+.++.++|.+ +++|.+-..+.+. +|+-|..++.+...++..+|....+|+..++..+-.++.|+..
T Consensus 297 -VRnvt~ra~~vva~algv~---~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~ 372 (975)
T COG5181 297 -VRNVTGRAVGVVADALGVE---ELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSR 372 (975)
T ss_pred -HHHHHHHHHHHHHHhhCcH---HHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccce
Confidence 7887888888898888865 5666677777775 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~---~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
.||..+..++..+.+..++- ..+.++..+.++....-
T Consensus 373 ~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr---------------------------------------- 412 (975)
T COG5181 373 FVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR---------------------------------------- 412 (975)
T ss_pred eeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC----------------------------------------
Confidence 99998888888877765443 33444444433321110
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~-~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
..+-.+-+.+.+.+..- .|.-...+....+..+...+++++++.+.....
T Consensus 413 -----------------------------gk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~ 463 (975)
T COG5181 413 -----------------------------GKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV 463 (975)
T ss_pred -----------------------------CchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH
Confidence 00000111111111111 122222334455666777778887776665544
Q ss_pred HHHHHHHHhccc----hhhhHHHHHhhh-----cCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc
Q 000050 1908 ALGELVRKLGER----VLPSIIPILSRG-----LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978 (2622)
Q Consensus 1908 ~L~~lv~~~~~~----~l~~llp~L~~~-----L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d 1978 (2622)
... .|.+.|.. ...++.|.+... .....+.-++.+ .+-.-+.+..+. +.+...+..-+.|+.
T Consensus 464 v~~-~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~-~ttvilAk~~g~-------~~v~~kil~~~~De~ 534 (975)
T COG5181 464 VER-ICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVV-LTTVILAKMGGD-------PRVSRKILEYYSDEP 534 (975)
T ss_pred HHH-HHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceee-hhHHHHHHHcCC-------hHHHHHHHhhccCCc
Confidence 443 34444332 234444444331 111111111111 111111122221 345666677788888
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHH
Q 000050 1979 LEVRESAGLAFSTLFKSAGMQAIDE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 2053 (2622)
Q Consensus 1979 ~~VR~~A~~al~~l~~~~g~~~~~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~ 2053 (2622)
+-.|..++.+..++....|...+++ ++..++..+...+.. ...++|
T Consensus 535 ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t--------------~~~il~--------------- 585 (975)
T COG5181 535 EPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT--------------VGLILP--------------- 585 (975)
T ss_pred chhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc--------------ccEEEe---------------
Confidence 8889999888888887777544433 233333322221110 111222
Q ss_pred HHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHh---hhccCh-hcHHHHHHHHHhhcCCCChhHH
Q 000050 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV---TLVIDE-EGVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2054 ~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l---~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
+++......+-...||++.|+..++..|+++.+.+|..++..++.+ +..+++ ..+..+-..|.+.+..+++.+-
T Consensus 586 --~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvL 663 (975)
T COG5181 586 --CFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVL 663 (975)
T ss_pred --cccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHH
Confidence 1111111224456799999999999999999999999888766655 445555 4477777788899998999998
Q ss_pred HHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhh
Q 000050 2130 RSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~-~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2622)
-..+.++..+....+. .+.|-..++++.|...+......|..+....++.++...+. +.+ .-+.++
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-yi~-~rEWMR----------- 730 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-YIG-VREWMR----------- 730 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-cCC-HHHHHH-----------
Confidence 8888888877665443 35666788999999999988888888888888887765443 110 011111
Q ss_pred hhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhh
Q 000050 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2622)
Q Consensus 2209 ~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~v 2288 (2622)
|.=-+++.|.+-+.+.|.+|-..+|.+.+..|++.+
T Consensus 731 ---------------------IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdv----------------------- 766 (975)
T COG5181 731 ---------------------ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDV----------------------- 766 (975)
T ss_pred ---------------------HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHH-----------------------
Confidence 111234445555667777777777777766664322
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHH
Q 000050 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 2368 (2622)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~ 2368 (2622)
..+++..|.-..+..|.-...+++..+.+.+-+ ..+|.|+....+++..||+.
T Consensus 767 --------------------------L~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-sVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 767 --------------------------LDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-SVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred --------------------------HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-hhHHHHHhcccCchhHHHHh
Confidence 222222233233344444444555554443322 36889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHh
Q 000050 2369 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHG 2448 (2622)
Q Consensus 2369 ~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~ 2448 (2622)
+++|+....+..|.. +..|.-.|.++|.+.+.|++...|..++..|.+++.+.+.......+-+++|.+.
T Consensus 820 vLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllw--------- 889 (975)
T COG5181 820 VLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLW--------- 889 (975)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhh---------
Confidence 999999998877763 3678999999999999999999999999999999988664333333334443211
Q ss_pred HHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC
Q 000050 2449 SVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD 2528 (2622)
Q Consensus 2449 ~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~ 2528 (2622)
..+-+..|.+-.+.-+++..+...- ....+..-+.+++-++
T Consensus 890 ------------------------------pNIle~sPhvi~~~~Eg~e~~~~~l---------g~g~~m~Yv~qGLFHP 930 (975)
T COG5181 890 ------------------------------PNILEPSPHVIQSFDEGMESFATVL---------GSGAMMKYVQQGLFHP 930 (975)
T ss_pred ------------------------------hhccCCCcHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHhccCc
Confidence 1111112222222222222211111 1245667778888999
Q ss_pred CHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2529 SSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2529 s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
+..||..-..+.+.+-+...++..|++
T Consensus 931 s~~VRk~ywtvyn~myv~~~damvp~y 957 (975)
T COG5181 931 SSTVRKRYWTVYNIMYVFDSDAMVPCY 957 (975)
T ss_pred hHHHHHHHHHHHhhhhhcccccccccc
Confidence 999999999999998888777766654
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.85 E-value=1.7e-16 Score=190.08 Aligned_cols=715 Identities=16% Similarity=0.163 Sum_probs=461.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhh-ccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
..++.....|..+...+..=..+..+.. +.+++|.+++. |+++ .|+--+.++..+.+.....-.++..+|+-.+-
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDq---erhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQ---ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhh---hhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 4466667778777666655555555553 48888888764 5543 46777788888888765555555566554445
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHH
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
.++-|+++.+|...-+.+.+++...+=. ..+...-.-+...++++|. +..... ++-....+.|.|
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~vva--------~algv~~llpfl 321 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGVVA--------DALGVEELLPFL 321 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHHHH--------HhhCcHHHHHHH
Confidence 5778899999988877777777665411 1111111112233455663 222221 122345678888
Q ss_pred HhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000050 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2622)
Q Consensus 1582 ~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~---~~~~~ 1657 (2622)
.....++ +|+-|.....+...+|...|. ...+|+..++..+.+.+.|.+..||..++.+++.+++..|+ +.|+.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999998775 67889999999999999999999999999999999998776 36788
Q ss_pred hHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh-
Q 000050 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ- 1732 (2622)
Q Consensus 1658 ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~- 1732 (2622)
++..|.+..+++.+. +-.....+.|-++.-+.+++. .+.+..+...+++++.+.+...+ .+...|...|..-.
T Consensus 400 vl~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l-~v~~~C~~v~~~tp~ 477 (975)
T COG5181 400 VLCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLL-VVERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHH-HHHHHHhccCCCCHH
Confidence 887787777665433 222333444444444455543 45666777778888777766544 34445554443211
Q ss_pred hhHHhHHHHHHhhcCCCChHHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1733 NYLQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al---------~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
-+..++.|.+++...- |..|. .+-..+.+..+. +.+...+.+...|+....|...+.+....+
T Consensus 478 ~lr~~v~pefF~~fw~-----rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 478 KLRDQVSPEFFSPFWR-----RRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred HHHHhhcHHhhchHHH-----hhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHH
Confidence 1234455555544321 11111 111111122221 123333444455555555555555555544
Q ss_pred HHhcCCccccccc---------C-CCCCCcccH--HHHHH--HHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000050 1804 FKVAGTSGKALLE---------G-GSDDEGAST--EAHGR--AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869 (2622)
Q Consensus 1804 ~~~~~~~~~~~~~---------~-~~dde~~~~--~~~~~--~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~ 1869 (2622)
..++-..-....+ . .+++...+. .-.+. .-.+..|+.+...+++.+...+....+.||+.|++..+
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3332110000000 0 000000000 00000 00234456677778888777888899999999999999
Q ss_pred HHHhh---ChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhhHHh
Q 000050 1870 TIVAN---TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQG 1942 (2622)
Q Consensus 1870 ~l~~~---~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~ 1942 (2622)
.++.. ++. ...+..+-..+.+.+....+++--....++..+....+-. -...++|.+...|+++...+..+
T Consensus 630 sl~~vlk~c~e--~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~n 707 (975)
T COG5181 630 SLAKVLKACGE--TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVAN 707 (975)
T ss_pred HHHHHHHhcch--HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhh
Confidence 88763 332 1345556666778888888888777777777777665543 23355566666666677777777
Q ss_pred HHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch----
Q 000050 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS---- 2018 (2622)
Q Consensus 1943 a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~---- 2018 (2622)
....++.|....+...-...+..+.-.+...|...+.++|.+|..+||-+.+..|+ .+++..|++.|+..+-+
T Consensus 708 ti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~Rvc 784 (975)
T COG5181 708 TIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVC 784 (975)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhh
Confidence 77777777655433222334455666677778888999999999999999999998 57888899988765532
Q ss_pred -hHHHHHHHHHHhhhccccccchhhhhhcCCC--chHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHH
Q 000050 2019 -DTALDGLKQILSVRTTAVLPHILPKLVHLPL--SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAK 2095 (2622)
Q Consensus 2019 -~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~--~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~ 2095 (2622)
..++....+.|+ .-.++|.++....+|.. +....+|+..+.+..|.+-..|+..|.|.|-+++.|.|+.-|+.+.
T Consensus 785 tsvaI~iVae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~ 862 (975)
T COG5181 785 TSVAISIVAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAM 862 (975)
T ss_pred hhhhhhhhHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHH
Confidence 234444444443 23466777766666543 3345678888888889999999999999999999999999999999
Q ss_pred HHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHH
Q 000050 2096 EAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVA 2171 (2622)
Q Consensus 2096 ~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~ 2171 (2622)
..+.+++.++.. +..-.+++.|...+-++.|.+.++.-.++..|....+. ..++..+.+-+=.+...||+
T Consensus 863 nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~------g~~m~Yv~qGLFHPs~~VRk 936 (975)
T COG5181 863 NVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS------GAMMKYVQQGLFHPSSTVRK 936 (975)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHHhccCchHHHHH
Confidence 999999887643 44667888888888899999999999999888765432 23334444444578889999
Q ss_pred HHHHHHHHHH
Q 000050 2172 AAWEALSRVV 2181 (2622)
Q Consensus 2172 ~a~~aL~~l~ 2181 (2622)
.-|..++.+-
T Consensus 937 ~ywtvyn~my 946 (975)
T COG5181 937 RYWTVYNIMY 946 (975)
T ss_pred HHHHHHhhhh
Confidence 9988877664
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.82 E-value=5e-17 Score=213.25 Aligned_cols=557 Identities=21% Similarity=0.250 Sum_probs=405.3
Q ss_pred CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHc
Q 000050 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2622)
Q Consensus 1350 ~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l 1429 (2622)
++.+.|.....-+..+....|.... ...++|++.+.+ +. +..+...+..-++.+....| ...|...++|.+....
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~ 168 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLA 168 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhh
Confidence 4567788888888888877777655 347999999998 54 56677666666666554433 1223334566666677
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHH-HHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhh
Q 000050 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ-SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEV 1507 (2622)
Q Consensus 1430 ~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~-~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~ 1507 (2622)
.+....||+++.+.+..+...++.......+-+++..+...+|+..+ .+|.+++...-..+ ..+. .++-|...++
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk---~elr~~~~~l 245 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK---RELRPIVQSL 245 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH---HHHHHHHHhh
Confidence 78888999999999999999988887766666777777777887644 45666666655444 3343 3444556678
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhH-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.+|..+.||.+++.-++.+++.+.+... ..++|. +.....
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~---------------------------------------~~~L~~ 286 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPT---------------------------------------LIQLLR 286 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHH---------------------------------------Hhhhhh
Confidence 8999999999999999999988764221 233333 334444
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~~~~ll~~Ll~~ 1665 (2622)
|....+|..|...+.++...+..+. +....+.+.+.+...|++|.+|.........+...+|++ ......+.....
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l 363 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNL 363 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHH
Confidence 4445677777777777776654421 445668888999999999999999999999999999986 345556666666
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
++... ...|...+.-..++......+ ....++|.+...+.+.+.++|.+.......+...+|. ..-+..+.|
T Consensus 364 ~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp 440 (759)
T KOG0211|consen 364 LKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLP 440 (759)
T ss_pred hcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccCh
Confidence 65543 445656655566665555422 2355678888889999999999888877777777773 344666889
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHhh---hc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000050 1741 AILDGLADENESVRDAALGAGHVLVEHYA---TT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2622)
Q Consensus 1741 ~ll~~L~d~~~~VR~~al~al~~lv~~~~---~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2622)
.....++|+...||......+........ -. ..+.++|.+.....|..||+|.+.++.+..++.+
T Consensus 441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q----------- 509 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ----------- 509 (759)
T ss_pred hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999888765544333222 22 2345888888888888999999988888776532
Q ss_pred CCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc
Q 000050 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895 (2622)
Q Consensus 1817 ~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~ 1895 (2622)
+|.+++++.+..++.. +.|....+|++|...+..++..++. .-....+++.++....
T Consensus 510 --------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 510 --------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDL 567 (759)
T ss_pred --------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhc
Confidence 2333444444444443 5777889999999999999998772 2344556666666667
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh
Q 000050 1896 SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2622)
Q Consensus 1896 s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2622)
++++..|.+...++..++..+|.. ....++|.+.....|+.+++|.+++..+..++......... ..+.|.+....
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~ 644 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLS 644 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhc
Confidence 778999999999999999999988 46899999999999999999999999999988766654443 45666666777
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q 000050 1975 CDSILEVRESAGLAFSTLFKS 1995 (2622)
Q Consensus 1975 ~d~d~~VR~~A~~al~~l~~~ 1995 (2622)
.|++.+||..|..+++.+...
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred cCcccchhHHHHHHHHHHHHH
Confidence 799999999999998887543
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=9.5e-13 Score=158.83 Aligned_cols=464 Identities=16% Similarity=0.195 Sum_probs=340.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHH-HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp-~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
+.+.+.+.-++.|..|+.-+..+++.+-.. ....++. ...+...+++...|.|...+++...-..|.+... |+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~ 83 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLE 83 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHH
Confidence 456677888999999999999888865332 2344444 3334556778888889999998876667766655 999
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhh
Q 000050 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 2044 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L 2044 (2622)
.+++.+..++.|+|..||..|++.+..+.+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK-------------------------------------------------- 113 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAK-------------------------------------------------- 113 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887765543
Q ss_pred hcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccC-----hhcHHHHHHHHHh
Q 000050 2045 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID-----EEGVESLVSELLK 2119 (2622)
Q Consensus 2045 ~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~-----~~~l~~ll~~Ll~ 2119 (2622)
++..++.+|++.|+..+.+...|.+..+|..+ +-++.++..+. .-+++.++|.|-.
T Consensus 114 ------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~e 174 (675)
T KOG0212|consen 114 ------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRE 174 (675)
T ss_pred ------------------HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 22334455667777777777777777776543 44555554331 1248999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHH
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 2199 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~ 2199 (2622)
++...++.+|+.....+..+-...+.++..|++.++..|+..+.|+..+||..+-.+++.+.......-
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P----------- 243 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP----------- 243 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 999999999999999999998888889999999999999999999999999998888888765432110
Q ss_pred HhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHh
Q 000050 2200 ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279 (2622)
Q Consensus 2200 l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~ 2279 (2622)
+ ++ .....++++...+.++.++.+..|...|.++++-.| ..+-+|.+.+.+.++..
T Consensus 244 -----~--------------s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 244 -----S--------------SM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPC 299 (675)
T ss_pred -----c--------------cc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccC
Confidence 0 00 112345666667778889999999999999997766 78889999998888888
Q ss_pred hcCCCCHhhHHHHHHHHHHHHHhcCCCc-c--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc-----cChhhHH
Q 000050 2280 IGDRFPWQVKSAILSTLSIIIRKGGIAL-K--PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPLV 2351 (2622)
Q Consensus 2280 l~~~~~~~vk~~al~~L~~L~~~~~~~l-~--p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~-----~~~~~ll 2351 (2622)
+.+..+..++..+...-+.+..-.+... + --+..+++++.+.+.+..++.|..+...+-.+-.-. .+.++++
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 8876554566666555544443322211 1 112468889999999999999999999998884322 2578899
Q ss_pred HHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 000050 2352 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 2431 (2622)
Q Consensus 2352 ~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l 2431 (2622)
+.|+..+.+++..|-...+.-+.+++..... ..+++-+.++| +++....--++.-+.-.+..+|..+.++.+...+
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL-~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLL-EMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHH-HHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 9999999988888888889999998875433 24555555555 4444444445666777888999998888777777
Q ss_pred HHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc
Q 000050 2432 QELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464 (2622)
Q Consensus 2432 ~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i 2464 (2622)
..++.+..+-+ ....++.+|+.++-.+|+..
T Consensus 456 a~ILe~e~nl~--FAstMV~~Ln~iLlTStELf 486 (675)
T KOG0212|consen 456 ADILEREENLK--FASTMVQALNTILLTSTELF 486 (675)
T ss_pred HHHHhccccch--HHHHHHHHHHhhhcccHHHH
Confidence 77776533333 24457888888887777654
No 24
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-13 Score=182.11 Aligned_cols=530 Identities=18% Similarity=0.223 Sum_probs=378.4
Q ss_pred hhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcC-CCCHHHHHHHHhhhHhhHhh
Q 000050 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQS 1330 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~-~~~~~Vq~~a~~~L~~lv~~ 1330 (2622)
...++|.+.+... ..+++......-+|.+..+. .-+....++...++.+. +....||..+++++......
T Consensus 119 r~~lipf~~e~~~-------~~dev~~~~a~~~~~~~~~v--~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAED-------DEDEVLLDLAEQLGTFLPDV--GGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhcc-------chhHHHHHHHHHhcccchhc--cchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888772 24566666655666555432 12333333333344333 33456899999998777666
Q ss_pred hccch-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000050 1331 MQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1331 ~~~~~-~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~ 1409 (2622)
..+.. .+.+..++..+...+-...|..++..++.......+..++ ..+.+...+.+++. ++++|.++..-++.++..
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAKV 267 (759)
T ss_pred cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHHH
Confidence 54432 3555567777766632244555555566666555555554 36777788888887 799999999999999988
Q ss_pred hcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1410 ~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
.+. ..-...++|.+.....|....||.+|.+++..++..+... ..+.+.+.+++..+++.|+++.........+..
T Consensus 268 ~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 268 LES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred HHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 775 3334467788888889999999999999999999977665 458889999999999999999877776666554
Q ss_pred hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hh--HHhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000050 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2622)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~ilp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2622)
....+ ..-+..++.....++|...++|.++..-.+.+...... +. .+.++|.+.....|.+..+|.+....+.
T Consensus 346 ~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 346 AVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred Hhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 32222 22356678888899999999999999888888876652 22 2567899999999999999855432221
Q ss_pred c--cccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHH
Q 000050 1563 T--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2622)
Q Consensus 1563 ~--~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~ 1640 (2622)
. ...+ .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+.++|.+..+-.|..|++|.+..
T Consensus 424 ~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 0 1111 2345556788888899999999998888766444332 332334556788899999998899999999999
Q ss_pred HHHHHHHhhhCCCCchhhHH-HHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH-HHhHhHHHHHhccCCChhhHHHHHH
Q 000050 1641 RAIGSLIRGMGEENFPDLVS-WLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLT 1718 (2622)
Q Consensus 1641 ~aL~~L~~~~g~~~~~~ll~-~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~-l~~llp~l~~~l~~~~~~vR~~al~ 1718 (2622)
..+..++...|..++.+-+. .++..+.+ .....|.+++..+..++..+|.+. ...++|.++....++++..|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 99999999988665554433 33333333 335688899999999999999543 2678888888888888999999999
Q ss_pred HHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhh-hHHHHhhccCCCchHHHHHHHH
Q 000050 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVE 1797 (2622)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~-llp~l~~~l~d~~~rvR~~a~~ 1797 (2622)
++..++..+|..+ +.+.++|.+.....|..++||..+++.+..++..+.....+. +.|.+.....|.+-.+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999864 457799999999999999999999999999988776654443 6666655554544334444444
Q ss_pred HHHHH
Q 000050 1798 LLGDL 1802 (2622)
Q Consensus 1798 ll~~l 1802 (2622)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 44443
No 25
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-08 Score=132.14 Aligned_cols=645 Identities=18% Similarity=0.210 Sum_probs=351.6
Q ss_pred CcchHHHHHHHHHHcCCCCHHHH--HHHHhhhHhhHhhhccc--------hHHHHHHHHHHHhcC-----CChHHHHHHH
Q 000050 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQDE--------APTLVSRLLDQLMKS-----DKYGERRGAA 1359 (2622)
Q Consensus 1295 ~~~v~~i~~~L~~~l~~~~~~Vq--~~a~~~L~~lv~~~~~~--------~~~~i~~Ll~~L~~~-----~~~~~r~~Aa 1359 (2622)
||.++.+++.+...+....-.++ ..+.+-+..+++..+.+ .-..++.+++.|..+ .+|..|..-.
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 66667777777666655443332 23334444444332211 123556666666522 2578888777
Q ss_pred HHHHHHHhhhC-ccch------hh----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 000050 1360 FGLAGVVKGFG-ISSL------KK----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2622)
Q Consensus 1360 ~~L~~l~~~lg-~~~l------~~----~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~ 1428 (2622)
.-|.-++...- .+.+ .+ ..++.+...++... +..|.+|...+..+... ....+++...+..++.+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aalllsk~~sR--~D~~~~~~~Fl~~~l~~ 222 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAALLLSKLFSR--TDVKDLLLSFLDWLLDC 222 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHccc--ccHHHHHHHHHHHhhcc
Confidence 77777765421 1111 11 24555555566554 35555665555444421 12334455555555555
Q ss_pred cCCCCHH--HHHHHHHHHHHHHHhhcH---------------------H---hHHhhHHHHHhhc-------cCCChhhH
Q 000050 1429 FSDQVVA--VREAAECAARAMMSQLSA---------------------Q---GVKLVLPSLLKGL-------EDKAWRTK 1475 (2622)
Q Consensus 1429 l~D~~~~--VR~aa~~al~~i~~~l~~---------------------~---~v~~ilp~Ll~~L-------~~~~w~~r 1475 (2622)
-.+..++ +......++..+....+. . ...++++.+++.+ .+.+|+..
T Consensus 223 ~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~ 302 (1133)
T KOG1943|consen 223 PSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYS 302 (1133)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhh
Confidence 5544333 222233333333332211 1 1355677777743 35789988
Q ss_pred HHHHHHHHHHHhh--Cc-------------hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1476 QSSVQLLGAMAYC--AP-------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1476 ~~a~~~L~~la~~--~p-------------~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+|.-.+.+++-.. +| +.....+..++..|+..++|.+..||..|++.++.+....+..-.+..+.
T Consensus 303 rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~ 382 (1133)
T KOG1943|consen 303 RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIG 382 (1133)
T ss_pred cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHH
Confidence 8876666554321 11 11223345677788889999999999999999999999887333355555
Q ss_pred HHHhhcC---CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc--------CCCHHHHHHHHHHHHHhhhhcCC
Q 000050 1541 TLLMGLT---DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTE 1609 (2622)
Q Consensus 1541 ~Ll~~l~---d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2622)
..++.+. ++..-. .++-++.....-+-+-...+..++|.+..++. .....+|..|+-++-.+++.. .
T Consensus 383 svid~~~p~e~~~aWH-gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s 460 (1133)
T KOG1943|consen 383 SVIDLFNPAEDDSAWH-GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-S 460 (1133)
T ss_pred HHHHhcCcCCchhHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-C
Confidence 5555332 121111 22222222112222334566789999998873 235689999999999998874 6
Q ss_pred CCcccchHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1610 PKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1610 ~~~l~~~l~~ll~~L~-~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
+.++.||+..+.+.|. ..+-|+.-.+|.+|..|+-..+...|. ++.=++.+ ... +.-+...|......++..+.
T Consensus 461 ~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~Li-s~~-dy~sV~~rsNcy~~l~~~ia- 535 (1133)
T KOG1943|consen 461 PSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGISLI-STI-DYFSVTNRSNCYLDLCVSIA- 535 (1133)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchhhh-hhc-chhhhhhhhhHHHHHhHHHH-
Confidence 6889999998877665 456799999999999988877665442 22222211 000 11111122222111221111
Q ss_pred hchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh-cCCCChHHHHHHHHHHHHHHHH
Q 000050 1689 LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~-L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
.|..|...++..++.. +.+.+..+|+.+..++..+...
T Consensus 536 -----------------------------------------~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 536 -----------------------------------------EFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred -----------------------------------------hhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 2334555555554443 6677777777777777776655
Q ss_pred hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHH
Q 000050 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2622)
Q Consensus 1768 ~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~ 1847 (2622)
.++...+..+|.+.+.....+-..|.++....|+++.......+ +. ....+ ..+. ....+++
T Consensus 575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~-~~--------~~l~e---~~i~------~l~~ii~ 636 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEP-VI--------KGLDE---NRIA------GLLSIIP 636 (1133)
T ss_pred hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhh-hh--------hhhHH---HHhh------hhhhhcc
Confidence 55555555666666666566666666666666666543221100 00 00000 0000 0111233
Q ss_pred HHHHhccCC--CHHHHHHHHHHHHHHHhhChhhHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--ccchhh
Q 000050 1848 ALYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP 1922 (2622)
Q Consensus 1848 ~L~~~~~D~--~~~VR~aA~~~l~~l~~~~p~~l~~~l~~-ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~--~~~~l~ 1922 (2622)
.++...-+. ....|.+....+..+..+.++.+..++-. ....+.+.+.+++ .+|..+..++++++... ++....
T Consensus 637 ~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 637 PICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE 715 (1133)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh
Confidence 333221111 14567777777777766666544444433 3334444455556 89999999999998654 222111
Q ss_pred -hHHHHHhhhcCCC-ChhhHHhHHHHHHHHHHhhChhhHHHhH-HhHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1923 -SIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1923 -~llp~L~~~L~d~-~~~vR~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L-~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.++......+.+. +..+|++...+++.+- .+.+.-++ +.+...+.... .|..++.|.....++..+++..+.
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~lp----~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~ 791 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVLP----SELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTS 791 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccCc----HHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444 6778888877776542 22232232 23333333333 244788899999999998887762
Q ss_pred ----hhhhhhHHHHHHhccc
Q 000050 1999 ----QAIDEIVPTLLHALED 2014 (2622)
Q Consensus 1999 ----~~~~~ilp~Ll~~L~~ 2014 (2622)
....++...|++.+.+
T Consensus 792 ~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 792 LLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred hhccccHHHHHHHHHHHHhh
Confidence 3456677777777754
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.5e-11 Score=148.75 Aligned_cols=419 Identities=19% Similarity=0.238 Sum_probs=300.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHh
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEH 1696 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~ 1696 (2622)
+.+.+.|...+-|+.|+--+..+++.+-.. .+..++..+............|.|...+++.++-++|.+ +.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 445667888889999999999998865432 345566655554444333445678888888888888876 4788
Q ss_pred HhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhh
Q 000050 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2622)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~l 1776 (2622)
++|.++..+++++..+|-.++..+..+++...+++.+|.+.+...+.+..+|.+..||.+|- .+.++++
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLik---------- 153 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIK---------- 153 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHH----------
Confidence 99999999999999999999999999999999999999999999999999999998886651 1111111
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCC
Q 000050 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1777 lp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~ 1856 (2622)
++. .+++..++ .+.+++.+-....+.
T Consensus 154 ------------------------dIV--------------te~~~tFs----------------L~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 154 ------------------------DIV--------------TESASTFS----------------LPEFIPLLRERIYVI 179 (675)
T ss_pred ------------------------Hhc--------------cccccccC----------------HHHHHHHHHHHHhcC
Confidence 110 00010111 122333333344667
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhc
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L 1932 (2622)
++.+|+.-+.-+..+-...+..+-.|+|.+++.+++++.+++.++|..+-.+++++....... -.+.+++++...+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 888999888888887777778888999999999999999999999999999999998776433 2578889999999
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhhh------hhhH
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEIV 2005 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~-~VR~~A~~al~~l~~~~g~~~~------~~il 2005 (2622)
.++++..+..+..|+.+++.-. +.++..++..++..+.+++.|.++ ..++.|...-+.+...++.... ..++
T Consensus 260 ~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii 338 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSII 338 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHH
Confidence 9999999999999999987654 456778899999999999988776 4777665554445444333211 1233
Q ss_pred HHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHH---HHhCCChhhhHhhhHHHHHHh
Q 000050 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALA---EVAGPGLNFHLGTILPALLSA 2082 (2622)
Q Consensus 2006 p~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa---~~~g~~l~~~l~~il~~Ll~~ 2082 (2622)
..+...+.++.. ..+..++..+. ..++..+..|...+++.|++.
T Consensus 339 ~vl~~~l~~~~~---------------------------------~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 339 EVLTKYLSDDRE---------------------------------ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHhhcchH---------------------------------HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 333333322211 11233333333 346778888999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 000050 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2622)
Q Consensus 2083 l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~ 2141 (2622)
+.|.+.++-..+...++.++.+-...+...++..|++..+.+..-.+.-+...+..+|.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999999888888888888766555677777778877766554444444444555543
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=3.7e-08 Score=130.65 Aligned_cols=690 Identities=17% Similarity=0.165 Sum_probs=374.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHH---HHHHHHhccchhhhHHH
Q 000050 1854 SDVSLSVRQAALHVWKTIVANTPKTLK---EIMPVLMNTLISSLASS-SSERRQVAGRAL---GELVRKLGERVLPSIIP 1926 (2622)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~p~~l~---~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L---~~lv~~~~~~~l~~llp 1926 (2622)
-+..+.||.+|.+.+..+..+.|-... +-........+..+.+. ....-....+.| ..++...+......+-.
T Consensus 148 ~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e 227 (1176)
T KOG1248|consen 148 AHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCE 227 (1176)
T ss_pred hcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 345667888888888777765442211 11111111122222111 112222222222 22232222223334444
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHH-------HHHHHHHHHHHHHHHhCh
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILE-------VRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~-------VR~~A~~al~~l~~~~g~ 1998 (2622)
.+...+...+..++..+.+++..+.....+..-......++..++..--+. |.. |-..|..++..+....+.
T Consensus 228 ~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~ 307 (1176)
T KOG1248|consen 228 VLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKAL 307 (1176)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 455555566777777888888777766554333334445555554432221 222 222233334443333333
Q ss_pred hhhhhhHHHHHHhcccCCch--hHHHHHHHHHHhhhccccccch----hhhhhcCC---CchHHHHHHHHHHHHhCCChh
Q 000050 1999 QAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHI----LPKLVHLP---LSAFNAHALGALAEVAGPGLN 2069 (2622)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~L----ip~L~~~~---~~~~~~~aL~sLa~~~g~~l~ 2069 (2622)
...+.+++.+...+.++... ..+-+.+.+++..... +.+.+ +..+.+-+ ...+..+++..+.+.+|....
T Consensus 308 ~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~ 386 (1176)
T KOG1248|consen 308 QALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSG 386 (1176)
T ss_pred HhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 33444555555533333221 2233334443321100 11111 11111111 111344677777788898888
Q ss_pred hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhc-ccccc
Q 000050 2070 FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLV 2148 (2622)
Q Consensus 2070 ~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~-~~~l~ 2148 (2622)
|++...+..+-..-.+++..-+...-.|++.-+..+|++.+-.++|.=+ -.+.....|. ++|..+-.+. +..+.
T Consensus 387 ~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~Rs---WLLPvLR~~i~~A~La 461 (1176)
T KOG1248|consen 387 PELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRS---WLLPVLRDYIIGASLA 461 (1176)
T ss_pred HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchh---HhHHHHHHhhccCcHH
Confidence 8888777777664444444444466678888888888887666666443 1222223333 3444333221 12222
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch-hhHHHHHHHHHhhchhhhhhhhcCCccccccCCC-CcC
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL-PKA 2226 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l-~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~-~~~ 2226 (2622)
-|...+++....+... - +....... ..+...+...+- ..+||||. |-.
T Consensus 462 ~F~~~ivpla~sl~~K-~---------------~~l~~~~~~~~~~~tl~~QLW--------------~LLP~FC~~P~D 511 (1176)
T KOG1248|consen 462 FFTEYIVPLAMSLQLK-A---------------KKLKEAGSQVSLYDTLVDQLW--------------SLLPGFCNYPVD 511 (1176)
T ss_pred HHHHHHHHHHHHHHHH-H---------------HhhhhccCcHHHHHHHHHHHH--------------HhChhhhCCCcc
Confidence 2222232222211100 0 00000000 012222222221 24899984 544
Q ss_pred chh----hHHHHHHHHccCCHHHHHHHHHHHHHHHhhc----Chhh----hhhhhhhhhHHHHHhhcCC-----CCHhhH
Q 000050 2227 LQP----LLPIFLQGLISGSAELREQAALGLGELIEVT----SEQS----LKEFVIPITGPLIRIIGDR-----FPWQVK 2289 (2622)
Q Consensus 2227 l~~----ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~----~~~~----l~p~v~~i~~~Li~~l~~~-----~~~~vk 2289 (2622)
+.. +.|++...+.+.. +.|...+.+|..++... .... +..+...+.+.+.++-... .....+
T Consensus 512 l~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~ 590 (1176)
T KOG1248|consen 512 LAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASR 590 (1176)
T ss_pred HHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHH
Confidence 433 6677777776655 99999999999999774 2222 3333444445555544322 223344
Q ss_pred HHHHHHHH-HHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-Hhcc-----cChhhHHHHHHHhhhcC-
Q 000050 2290 SAILSTLS-IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL-SALS-----TRVDPLVGDLLSSLQVS- 2361 (2622)
Q Consensus 2290 ~~al~~L~-~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L-~~~~-----~~~~~ll~~Ll~~l~~~- 2361 (2622)
...|.... ......+..+ ...|....-....+.++.++.--...+-.+ +.+. ..+..++ .+.....+.
T Consensus 591 ~~~L~~i~~~~~~~t~~dv---~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~ 666 (1176)
T KOG1248|consen 591 STVLEIIRVDYFTVTPTDV---VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSS 666 (1176)
T ss_pred HHHHHHHHHHHhhcccHHH---HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccc
Confidence 44454444 4444444322 223333333334444445544433333333 2221 2344444 444544443
Q ss_pred CHhHHHHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH---HHHHHHHHHhh
Q 000050 2362 DAGIREAILTALKGVLKH-AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL 2437 (2622)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~-~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~ 2437 (2622)
+..+|.....-|.+++.. .|..........|.+.|.+.+++.....+.....|+..+.+..+.+. +...+++++-.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 578898889999998876 23333456677888888888888888899999999999999998433 34455553322
Q ss_pred cCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchh
Q 000050 2438 ASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV 2513 (2622)
Q Consensus 2438 ~~~~~~~~r~~~~~~L~~~l~~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~ 2513 (2622)
.+..+...|+.+..+|..+...+...... .....+++..|..++..+....+..-+.|++.++..+... ..+..
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~--ld~~~ 824 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI--LDDET 824 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc--ccHHH
Confidence 35666667777777777776321111111 2245677777777776676666666688888887766432 23356
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchh-hhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhc
Q 000050 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA-IMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2622)
Q Consensus 2514 l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~-v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~ 2586 (2622)
+..++..+...|.+++.+++.+|+..++.+...-|+. +.+|++.++|.++..+++....+|.+.-.=+-.+.+
T Consensus 825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 7778888888899999999999999999999999988 699999999999999999999998887644444433
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.7e-07 Score=124.45 Aligned_cols=756 Identities=17% Similarity=0.169 Sum_probs=422.4
Q ss_pred chHHHHHHHHHHcC--CCCHHHHHHHHhhhHhhHhhhccch------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 000050 1297 KVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2622)
Q Consensus 1297 ~v~~i~~~L~~~l~--~~~~~Vq~~a~~~L~~lv~~~~~~~------~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~ 1368 (2622)
+...++..|...+. ..+..|...+..||..++..-.... ...+..++.... ++....|..|..+++.++.+
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcC
Confidence 45556666666666 5677899999999999987632211 223333333333 33457899999999999986
Q ss_pred hCccch--h--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000050 1369 FGISSL--K--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2622)
Q Consensus 1369 lg~~~l--~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2622)
.+-... . ...+..++.+.++....+......+..+..|-..+...-.+.+..+...++..++..+..|+-.+..++
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l 248 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCL 248 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 431111 1 012334444444443332333333333333333344433577888999999999999999999999999
Q ss_pred HHHHHhhcHH----hHHhhHHHHHhhccC-CChhhHHHHHHH----HHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHH
Q 000050 1445 RAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQL----LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKV 1515 (2622)
Q Consensus 1445 ~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~----L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~V 1515 (2622)
..++..-++. ....++..+.+.--+ .+...-.+-+.+ ...++...++..-..+|.+++.++.++...++++
T Consensus 249 ~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~ 328 (1176)
T KOG1248|consen 249 HSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEEL 328 (1176)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHH
Confidence 9988865553 123444444332111 111111111222 2233334444445567888888888888888888
Q ss_pred HHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHH
Q 000050 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2622)
Q Consensus 1516 R~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~ 1595 (2622)
-.+|-+++..+.+.... +.+.+... .+..+++-+...+-+.
T Consensus 329 ~q~a~q~l~~il~~sv~-----~~~~~c~~----------------------------------~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVT-----VIDALCSK----------------------------------QLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------HHHHHHcchHHHHHHH
Confidence 88888888888754321 11111110 1112222223345556
Q ss_pred HHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHH
Q 000050 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r 1675 (2622)
+.+++..+++.+|. ...||+-..+..+...=.+++..-+...-.|+|+-+.++|++.+-.++|.=+ ..+.....|
T Consensus 370 ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl---~~~s~~~~R 444 (1176)
T KOG1248|consen 370 ILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL---HAESLSFTR 444 (1176)
T ss_pred HHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc---cccccccch
Confidence 67777777777665 4556666666666655556666667788899999999999986655655322 111111112
Q ss_pred HHHHHHHHHHHHHhchhHH-HhHhHHHHHh------ccC---CChhhHHHHHHHHHHhhhhhC--cchhhhHHhHHHHHH
Q 000050 1676 SGAAQGLSEVLAALGTVYF-EHILPDIIRN------CSH---QRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAIL 1743 (2622)
Q Consensus 1676 ~~a~~~L~~i~~~~g~~~l-~~llp~l~~~------l~~---~~~~vR~~al~~l~~L~~~~g--~~f~p~l~~ii~~ll 1743 (2622)
.=..=-|-.-+.+....++ +.++|-..+. +.. .....+.-..++|+-|+..|. .+...-+..+.|.+.
T Consensus 445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~ 524 (1176)
T KOG1248|consen 445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG 524 (1176)
T ss_pred hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence 1000001111111111222 3444433322 111 111345556677777777653 455555667778887
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHh-hhc-----------hhhhhHHHHhhccCC------CchHHHHHHHHHHHHHHHH
Q 000050 1744 DGLADENESVRDAALGAGHVLVEHY-ATT-----------SLPLLLPAVEDGIFN------DNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1744 ~~L~d~~~~VR~~al~al~~lv~~~-~~~-----------~i~~llp~l~~~l~d------~~~rvR~~a~~ll~~ll~~ 1805 (2622)
..+.... +.|.....++..+++.- +.. ...-++|.+.+.-.. +.-+.|..-++.+....++
T Consensus 525 ~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~ 603 (1176)
T KOG1248|consen 525 AALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT 603 (1176)
T ss_pred HHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence 7777654 88999888888887642 110 111234443322111 1111233222222211111
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHH----HHHHHHHHHHHHhhChhhHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV----RQAALHVWKTIVANTPKTLKE 1881 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~V----R~aA~~~l~~l~~~~p~~l~~ 1881 (2622)
..+. +....+.+.+| ....|.+..+ +-.-++.+..++...+. .
T Consensus 604 ~t~~------------------dv~~~l~~s~~------------e~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~ 650 (1176)
T KOG1248|consen 604 VTPT------------------DVVGSLKDSAG------------ELASDLDESVASFKTLSLLDLLIALAPVQTE---S 650 (1176)
T ss_pred cccH------------------HHHHHHHHHHH------------hHhccchhhhhhHHHHHHHHHHHhhhccccc---h
Confidence 1000 00011111111 1112221122 22223333333332221 2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----ccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh
Q 000050 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-----GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2622)
Q Consensus 1882 ~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~-----~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~ 1956 (2622)
.+..+....-..-++.+..++.-+.+.|.+++..- -......+...+...+++.....+...+.++..+++.++.
T Consensus 651 ~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~ 730 (1176)
T KOG1248|consen 651 QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA 730 (1176)
T ss_pred hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH
Confidence 22222222222234557888999999999998761 1123456666677777777777888899999999887773
Q ss_pred hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch-hHHHHHHHHHHhhhccc
Q 000050 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTA 2035 (2622)
Q Consensus 1957 ~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ 2035 (2622)
....+.+..++.+.-.+.+.+...|..|..++-.+.... ..+.+.++. ...
T Consensus 731 -e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~-------------~~~d~g~e~~~~~-------------- 782 (1176)
T KOG1248|consen 731 -EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQ-------------SSLDDGNEPASAI-------------- 782 (1176)
T ss_pred -HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHH-------------hhhcccccchHHH--------------
Confidence 344566666776666668888888998888776654200 001111110 001
Q ss_pred cccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhc----cChhcHH
Q 000050 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV----IDEEGVE 2111 (2622)
Q Consensus 2036 ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~----~~~~~l~ 2111 (2622)
+.+|+. .+...+..+...++...+-++..++.. ++.+.++
T Consensus 783 --------------------------------lnefl~----~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 783 --------------------------------LNEFLS----IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred --------------------------------HHHHHH----HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 111222 222222222222332223444444442 3456688
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchh
Q 000050 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQP 2190 (2622)
Q Consensus 2112 ~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~-~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2622)
.+++.+...+.+.++.++.+|+..+..++...+. -+.++.+++++.++.+..|....+|..+..-+..+++..+-+.+.
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999999999877664 478899999999999999999999999999999999988877666
Q ss_pred hHHHH
Q 000050 2191 SYIKV 2195 (2622)
Q Consensus 2191 ~lv~~ 2195 (2622)
.+++.
T Consensus 907 ~~~pe 911 (1176)
T KOG1248|consen 907 SFLPE 911 (1176)
T ss_pred hhCHH
Confidence 65553
No 29
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.2e-07 Score=121.91 Aligned_cols=690 Identities=18% Similarity=0.188 Sum_probs=347.8
Q ss_pred CCHHHHHHHHHHHHHHHhh------hCCC-Cc--hhhHHHHHH----HhhhcCChHHHHHHHHHHHHHHHH-hchhHHHh
Q 000050 1631 PIPEVRSVAARAIGSLIRG------MGEE-NF--PDLVSWLLD----ALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEH 1696 (2622)
Q Consensus 1631 ~~~~vR~~a~~aL~~L~~~------~g~~-~~--~~ll~~Ll~----~L~~~~~~~~r~~a~~~L~~i~~~-~g~~~l~~ 1696 (2622)
..|+.|.....-|..++.. +.+. .. ..++..++. .+.... ..|..++..++..... -+.+.+..
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~ 214 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLS 214 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHH
Confidence 3567777766666666542 1110 01 112333332 333332 3566677667765532 22333455
Q ss_pred HhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhC-cchhhhHHhHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhc
Q 000050 1697 ILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1697 llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~ 1771 (2622)
++..++..-+.. +-..+-+.+.++..+.+... ++..||....+..+-..-..++. -+|+. +-.+++..|-.
T Consensus 215 Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKl----lvKl~QRiGlv 290 (1133)
T KOG1943|consen 215 FLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKL----LVKLVQRIGLV 290 (1133)
T ss_pred HHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHH----HHHHHHHhhhe
Confidence 555555443332 22355677777777776665 45566665555544333222222 12211 11222211100
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~ 1851 (2622)
. -.-...+||...+.-.+.+.+-..-.+.+.+..+.. +|+|+++. ..+ .+.++..++.
T Consensus 291 ---~------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~-~d~e~edv----~ei--------vE~vie~Lls 348 (1133)
T KOG1943|consen 291 ---S------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQ-DDDEGEDV----PEI--------VEFVIEHLLS 348 (1133)
T ss_pred ---e------cCCCCcchhhhcccchhhhccCccccccCccccccc-cccccccc----HHH--------HHHHHHHHHH
Confidence 0 001346888654433333322100001111222221 22222211 111 2245566677
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--ccchhhhHHHHH
Q 000050 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPIL 1928 (2622)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L 1928 (2622)
.++|.+..||-.|++.++.+....|..+ ..+.+..++.+++--+ +..=..++-+|+++...- -+..++.++|.+
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 7899999999999999999999999544 4455556666554222 223336777778777541 122456888988
Q ss_pred hhhcCC--------CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1929 SRGLKD--------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1929 ~~~L~d--------~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~-~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
.+++.- ....+|-++|+.+-.+.....+..+.+++..+.+.+. .++-|++-.+|.+|..||-......|..
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC
Confidence 887652 2356899999999999888899999999988888765 4778999999999887765443222211
Q ss_pred hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHH
Q 000050 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPAL 2079 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~L 2079 (2622)
|.=++.... .+-.+++..+.
T Consensus 506 --------------------------------------p~Gi~Lis~-----~dy~sV~~rsN----------------- 525 (1133)
T KOG1943|consen 506 --------------------------------------PHGISLIST-----IDYFSVTNRSN----------------- 525 (1133)
T ss_pred --------------------------------------CCchhhhhh-----cchhhhhhhhh-----------------
Confidence 000000000 00111111111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHhhccccccccHHHHHH
Q 000050 2080 LSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 2156 (2622)
Q Consensus 2080 l~~l~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~-l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~ 2156 (2622)
|...+...+. +.+...+++.++.. +.+-|..+|..++.+|..+....+..+.. ..++
T Consensus 526 -----------------cy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~---~~L~ 585 (1133)
T KOG1943|consen 526 -----------------CYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD---YVLP 585 (1133)
T ss_pred -----------------HHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---cchh
Confidence 1111111111 12233444444443 55666777777777777766554444332 2345
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHH
Q 000050 2157 TLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQ 2236 (2622)
Q Consensus 2157 ~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~ 2236 (2622)
.++......+...|..+..+.+.++....+-. +.+...-.+. + .++..++|.+..
T Consensus 586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i------~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I------AGLLSIIPPICD 640 (1133)
T ss_pred hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h------hhhhhhccHHHH
Confidence 55555556677777777777777665543322 0000000000 1 111122232222
Q ss_pred HHcc-CC-HHHHHHHHHHHHHHHhhcChhhhhhhhhh-hhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHH
Q 000050 2237 GLIS-GS-AELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2622)
Q Consensus 2237 ~L~~-~~-~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~ 2313 (2622)
.-.+ |. .-.|...+..+-.+...-. ..+..++.. ....+...+.. +..+|.++..+++.++...-..-.-+...
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~ 717 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAP 717 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhH
Confidence 2111 11 1222222222222221111 112222222 11112223322 33799999999999887432111111124
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHH--hcccChhhHH-HHHHHhhhcC-CHhHHHHHHHHHHHHHhhcCCCC----
Q 000050 2314 LQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVDPLV-GDLLSSLQVS-DAGIREAILTALKGVLKHAGKSV---- 2384 (2622)
Q Consensus 2314 L~~~llk~L~d~-~~~vR~~Aa~aLg~L~--~~~~~~~~ll-~~Ll~~l~~~-d~~vr~~~l~AL~~vi~~~g~~~---- 2384 (2622)
+++..+..+.+. ++.+|.-...++|.+- .++.+....+ ..++...-.. ..+-|...+.|+..++...+...
T Consensus 718 li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 718 LITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 767777777776 7899999999999873 2233333333 2223332222 46788889999999988766222
Q ss_pred ChHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhcCc------hHHHHHHHHHHhhcCCCCchhhHhHHHHHH
Q 000050 2385 SSAVKIRVYSVLKDLVYHD----DDHVRVSAASILGIMSQCMED------GQLADLLQELLNLASSPSWAARHGSVLVFA 2454 (2622)
Q Consensus 2385 ~~~~~~~i~~~L~~~l~~~----~~~vr~~aa~~Lg~L~~~~~~------~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 2454 (2622)
.++++..++..+.+...|. ...+|++|...+..+....+. +.+...+.-+++..-+.-...|.-++.+++
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 2455555555555554443 245999999999888766552 123333333333222222223444455566
Q ss_pred HHHhh
Q 000050 2455 TFLRH 2459 (2622)
Q Consensus 2455 ~~l~~ 2459 (2622)
.++..
T Consensus 878 qi~~~ 882 (1133)
T KOG1943|consen 878 QIVVH 882 (1133)
T ss_pred ceeec
Confidence 66555
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=2e-09 Score=147.56 Aligned_cols=468 Identities=16% Similarity=0.184 Sum_probs=313.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
....+.+.+.++ +...|..+-.++..+...-+ ....-+...+.+-+.++++.+|-.|..++..+. +++-.+.
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455666655 78888877776666554333 245567788888999999999988888877764 5566688
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC---hhH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2622)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+.+++.|+++.|+.+|+.++..+ +.-++ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 88999999999999999999999999998887765432 678888899999999999999999988 21111 223
Q ss_pred HhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhh--hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1536 ~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l--~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
..+++.|.+.+.++++-.+ ..++.+.. +.. ...... ..+++.+...+.+.++.+...+...+..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5556666666677776655 44554432 211 112222 45778888877777888888887777655331
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh
Q 000050 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
.+.+..+++.+..++.++++++|..+..++..++....+... .. ...+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hh-hhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 125678899999999999999999999999998876522212 11 1223355545556677777766666554 34
Q ss_pred HHHhHhHHHHHhccC-CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc
Q 000050 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1693 ~l~~llp~l~~~l~~-~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~ 1771 (2622)
....+++.+.+.+.+ .+..+|..++..++.++..++..+..|+.. +++.+....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~----l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT----LLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH----HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH----HHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 556778888888744 477899999999999998887766555544 444444444555544444444444332211
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~ 1851 (2622)
+. ..+..++.
T Consensus 412 --------------------~~--------------------------------------------------~~l~~L~~ 421 (526)
T PF01602_consen 412 --------------------RE--------------------------------------------------KILKKLIE 421 (526)
T ss_dssp --------------------HH--------------------------------------------------HHHHHHHH
T ss_pred --------------------hH--------------------------------------------------HHHHHHHH
Confidence 00 11111111
Q ss_pred hcc-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHh
Q 000050 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2622)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~ 1929 (2622)
... -.+..++..++-++|......+. .. ..+.++..+.+.+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 111 23445677777777776654433 11 56667777777777778889999999999999887653 5578888888
Q ss_pred hhcC--CCChhhHHhHHHHHHH
Q 000050 1930 RGLK--DPSASRRQGVCIGLSE 1949 (2622)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~~L~~ 1949 (2622)
.... +.++++|+.++..+.-
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHH
Confidence 8877 7899999999876553
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.41 E-value=1e-09 Score=150.36 Aligned_cols=478 Identities=15% Similarity=0.148 Sum_probs=323.0
Q ss_pred ccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000050 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2622)
Q Consensus 1332 ~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~ 1411 (2622)
|.+.......+++.+. +++...++.+...+..+...-+.... -+++.+.+-+.++ |+..|-.|+.+++.+. .
T Consensus 37 G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~---l~~n~l~kdl~~~-n~~~~~lAL~~l~~i~---~ 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLI---LIINSLQKDLNSP-NPYIRGLALRTLSNIR---T 108 (526)
T ss_dssp T---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHH---HHHHHHHHHHCSS-SHHHHHHHHHHHHHH----S
T ss_pred CCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHH---HHHHHHHHhhcCC-CHHHHHHHHhhhhhhc---c
Confidence 4444444445555444 67788888888887777654333111 3667777888887 7889988888777765 2
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh-hHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~-ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
......++|.+.+++.|+++.||++|..++..+....+ +.+.. ++|.+.+.+.++++.++.+|+.++..+ ...+
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 24456788899999999999999999999999987643 34444 789999999999999999999999998 4444
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH--HhHHHHHHhhcCCCChhHH-HHHHHHHhccccc
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN 1567 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~ 1567 (2622)
+.....++.++..+.+.+.+.+|.++....+.+..++..-. ... ..+++.+...+.+.+..+. +|+..+... .+
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l--~~ 260 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKL--SP 260 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHh--hc
Confidence 44345677788888888899999999988888887764321 122 4577777777765555555 566655431 11
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
..+.+..+++.+.+.+.+.++++|..+.+.+..++... .+++......+.-+..+++..+|..+...+..++
T Consensus 261 --~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 261 --SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chhhhhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 12256778999999999999999999999999887642 1222222223334444888999999999999888
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
.. +....+++.|...+.+..+...+..++..++.++..... ..+.+++.+++.+...+..+...+...+..+....
T Consensus 333 ~~---~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 333 NE---SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -H---HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred cc---cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 63 346678888888885443344788888999998887744 34566777788777777888888888888877665
Q ss_pred CcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhh-chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1728 GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYAT-TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1728 g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~-~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
+... ..++..+...+.+ .++.++..+...++........ .....++..+.+...+++..+|...+..+..+...
T Consensus 409 ~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 409 PELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp TTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhh
Confidence 4432 2345555666554 4566777777776665544433 12445666666666677777888888888777644
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVWKTI 1871 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~~VR~aA~~~l~~l 1871 (2622)
.+.. +..+.++..+..... +.+.+||+.|...|.-+
T Consensus 485 ~~~~------------------------------~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 485 NPEN------------------------------EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp SCST------------------------------THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred CCch------------------------------hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 2100 011123333333333 77999999999988654
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.39 E-value=1.3e-08 Score=137.09 Aligned_cols=502 Identities=14% Similarity=0.095 Sum_probs=315.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH
Q 000050 1891 ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2622)
Q Consensus 1891 ~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l 1970 (2622)
.+.|.+.+...|..+++.+-... ..|.++ ..+++-+.+.+.+++.++|.-+...+....... ++ ..--.++.+
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~m-t~G~Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pe----lalLaINtl 110 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANM-TMGRDV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PE----KALLAVNTF 110 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH-HCCCCc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hH----HHHHHHHHH
Confidence 34445656555544444332221 124443 445555666777888888888777776653321 11 123457777
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1971 ~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
.+-+.|+++.+|..|.++++.+.. .+
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~-------~~----------------------------------------------- 136 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV-------SS----------------------------------------------- 136 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc-------HH-----------------------------------------------
Confidence 888888999999888877665421 11
Q ss_pred hHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh-cHHHHHHHHHhhcCCCChhHH
Q 000050 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
.++.+++.+.+.+.|.++-||..|+-|+.++....++- .-..+++.|.+.+.|.|+.|.
T Consensus 137 --------------------i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 137 --------------------VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred --------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence 12234455666678888999999888888876533221 122456667777889999999
Q ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhh
Q 000050 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
.+|+.++..+.+..+..+ ......+..++..+.+-++=.+-...+.|.. ..+.+
T Consensus 197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~---------------------- 250 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD---------------------- 250 (746)
T ss_pred HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC----------------------
Confidence 999999988876654333 2334555556555554443332222222221 11110
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhH
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2622)
......++..+...+.+.++.+--.|+.++-.+.....++.++..+..+..||+..+. .+.+++
T Consensus 251 --------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiq 314 (746)
T PTZ00429 251 --------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQ 314 (746)
T ss_pred --------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHH
Confidence 0112235555566677778888888888887776554434455555667788888754 367899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHH
Q 000050 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369 (2622)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2622)
..++..+..++...+..+.+ -...|.-..+|++. +|......|-.++. ..+++.++.+|..-+.+.|.+.+..+
T Consensus 315 yvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999888876644333 24556556677765 89999998888754 45788999999998888888999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhc---CCCCchhh
Q 000050 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAAR 2446 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~r 2446 (2622)
+.|++.+..+. +.....++..|.+.+.+..+ +...+...+..+.+..|+.. ++..+.... .-.+...|
T Consensus 389 IrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 389 VRAIASLAIKV-----DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred HHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHH
Confidence 99999988764 34567788888888876554 33355677777877777632 233333211 11222223
Q ss_pred HhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhh-c
Q 000050 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA-L 2525 (2622)
Q Consensus 2447 ~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~-l 2525 (2622)
. ++..++.+..+.+-. ...++..+.+...++.+.+|-..+.+..++.....+ .....+..++.. .
T Consensus 460 a----aiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t 525 (746)
T PTZ00429 460 V----SLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVT 525 (746)
T ss_pred H----HHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHH
Confidence 2 334455454444421 335665566777778899999999999998877531 234455666643 2
Q ss_pred -CCCCHHHHHHHHHHHHHHH
Q 000050 2526 -HDDSSEVRRRALSALKSVA 2544 (2622)
Q Consensus 2526 -~d~s~dvr~~a~~~l~~~a 2544 (2622)
.++++|||..|..-.+-+.
T Consensus 526 ~~~~d~DVRDRA~~Y~rLLs 545 (746)
T PTZ00429 526 THSDDPDVRDRAFAYWRLLS 545 (746)
T ss_pred hcCCChhHHHHHHHHHHHHc
Confidence 3678899999987665443
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.30 E-value=1.3e-07 Score=127.80 Aligned_cols=494 Identities=12% Similarity=0.076 Sum_probs=310.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcc-hHHHHH
Q 000050 1225 LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVD 1303 (2622)
Q Consensus 1225 l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~-v~~i~~ 1303 (2622)
+.+++...|..++..+...+. .|. -+..+++-+-+.+... +-.+|.-+..++..++ +.+|. .--.+.
T Consensus 41 L~s~~~~~kk~alKkvIa~mt-~G~-DvS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaIN 108 (746)
T PTZ00429 41 LNGTDSYRKKAAVKRIIANMT-MGR-DVSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVN 108 (746)
T ss_pred HHCCCHHHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHH
Confidence 445555555444444333322 454 3455666555555542 3456666666655544 33444 334578
Q ss_pred HHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHH
Q 000050 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2622)
Q Consensus 1304 ~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L 1383 (2622)
.+.+-+.++++.+|..+.++++.+. ..+-.+.++..+...+ .+.+.-+|+.|+.|+..+....+ +.+...++.+.+
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L 184 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDL 184 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHH
Confidence 8899999999999999998887542 1111233333344444 44567899999999999987544 333233678888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhhHH
Q 000050 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLP 1461 (2622)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp 1461 (2622)
.+++.|+ |+.+.-.|+.++..+.+..+..+. .....+..++..+.+-++--+-...+.+ ....+ ......++.
T Consensus 185 ~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 185 VELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLT 259 (746)
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHH
Confidence 8888877 899999999999999876664332 2344555666666655554444333333 33222 223467778
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHhhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
.+...|.+.+..+..+++.++-.+.... +..+...+..+.+.++.+ ..+++++|-.+.+.+..+....+ ..+...+.
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~ 337 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLD 337 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHH
Confidence 8888888888888888888887776432 333333344454555555 45678999999999988887542 23344566
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh
Q 000050 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2622)
.+.-..+||.. ++ ..++.+... .++.....++..|.....+.+.+.++.+...+|.++..+. ...+.
T Consensus 338 ~Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~ 405 (746)
T PTZ00429 338 SFYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPD 405 (746)
T ss_pred hhhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHH
Confidence 66666678875 55 566666531 2334455677888888888899999999999999987542 24566
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--hhcCChHHHHHHHHHHHHHHHHhchhHHHhH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L--~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~l 1697 (2622)
++..|.+++.+... +...++..+..+.+.....+ +++.+...+ ..-.....|...+.-+|+.+..... ...+
T Consensus 406 cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~ 479 (746)
T PTZ00429 406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDI 479 (746)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHH
Confidence 77778788876544 34467788888877655432 445555433 1112233566667778887664422 2445
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhc-C-CCChHHHHHHHHHHHH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHV 1763 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L-~-d~~~~VR~~al~al~~ 1763 (2622)
+..++..+.+.+..||-..+.+...+....+.+.. ..+..+++.+ . +++.+||+.|.--++.
T Consensus 480 L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rL 543 (746)
T PTZ00429 480 IQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRL 543 (746)
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 55555666667888998888877777766654433 3444445433 3 4667999988654443
No 34
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=8.9e-07 Score=115.71 Aligned_cols=638 Identities=14% Similarity=0.169 Sum_probs=347.8
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccch-hhheeeecCCchHH-HHHHH--------HHHHhc
Q 000050 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-TSLWIAVHDPEKSV-AEAAE--------DIWDRY 1124 (2622)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~la~--------~~w~~~ 1124 (2622)
..+++.+++.+++.+|+..|++|+++|.+.... |. |. ..+.+..-|..+.+ |..|. +.|...
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pg---Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~ 73 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PG---FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSH 73 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----Cc---HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCcc
Confidence 346788899999999999999999999876422 22 33 33345555555554 44332 468766
Q ss_pred C-----CCCCCC----h-HhHHHHhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcch
Q 000050 1125 G-----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 1193 (2622)
Q Consensus 1125 ~-----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1193 (2622)
. +..+++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ . .....
T Consensus 74 ~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s------~~~~~ 143 (1010)
T KOG1991|consen 74 EAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----S------QDANH 143 (1010)
T ss_pred CCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----C------cchhh
Confidence 2 122222 3 66788888888899999999997775 4688888888777764321 1 12123
Q ss_pred hhHHHHHHHHhhhhhC--CCC----hhHHHHH----HHh---hhcCCCCHHHHHH---HHHHHHHHHHH------hccch
Q 000050 1194 RQGIALALHSAADVLR--TKD----LPVIMTF----LIS---RALADTNADVRGR---MLNAGIMIIDK------HGRDN 1251 (2622)
Q Consensus 1194 R~~~~~al~~~~~~~~--~~~----~~~i~~~----li~---~~l~d~~~~VR~~---a~~a~~~~i~~------~g~~~ 1251 (2622)
-.++..++..++..-+ .++ +..++.. +.. +-+.+.+...-.- .+......+-. ...+.
T Consensus 144 vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~ 223 (1010)
T KOG1991|consen 144 VYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPET 223 (1010)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchh
Confidence 3677888888876432 211 2222222 111 2234443333221 12222111110 11223
Q ss_pred hhhhHHHHHHHhcCCCCCh--hhhhhh---------hhHHHHHHHHHh-hhhccCC--c------------chHHHHHHH
Q 000050 1252 VSLLFPIFENYLNKKASDE--EKYDLV---------REGVVIFTGALA-KHLAKDD--P------------KVHAVVDKL 1305 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~--~~~~~v---------r~~~~~~~~~la-~~l~~~~--~------------~v~~i~~~L 1305 (2622)
...-+.+|-..++.+.+.+ ..+... +.=+...+.++- ++-+... + .+..+.+.+
T Consensus 224 f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~ 303 (1010)
T KOG1991|consen 224 FTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVF 303 (1010)
T ss_pred HHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555665543322 111222 222333333333 3322111 1 112222222
Q ss_pred HH---HcCC---CCHHHHHHHHhhhHhhH------hhhccchHHHHHH-HHHHHh---------cCC-------------
Q 000050 1306 LD---VLNT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLM---------KSD------------- 1350 (2622)
Q Consensus 1306 ~~---~l~~---~~~~Vq~~a~~~L~~lv------~~~~~~~~~~i~~-Ll~~L~---------~~~------------- 1350 (2622)
++ .++. -++.|-.-+..-+...+ +.+++....++.. ++..+. +.+
T Consensus 304 lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~e 383 (1010)
T KOG1991|consen 304 LKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFE 383 (1010)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhc
Confidence 22 2222 12333322222222111 1111111111111 111111 000
Q ss_pred C-hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhHHHH
Q 000050 1351 K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ 1420 (2622)
Q Consensus 1351 ~-~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~al~al~~La~~~~~--~~~~~v~~ 1420 (2622)
+ +..+-+|...+-.+++..|.+.+. .+++++.+.+. +.++++..+||+.+++.+++.+.+ .+...+..
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY 461 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH
Confidence 1 234457778888888889888886 78888887775 234788999999999999987763 23444443
Q ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCc---hhh
Q 000050 1421 -MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2622)
Q Consensus 1421 -ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p---~~l 1493 (2622)
++++++..+.++.-..|..|+..+..+. ..+++.. ....+....++|. +.+-.+|..|+.+|..+....+ ..+
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 5688889999999999999999988887 4565554 3667777777777 7788999999999999888765 348
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHH-HHHHhhhcCC--hh-HHhHHHHHHhhcCC--C-ChhHH-HH------HHH
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PE-IASLVPTLLMGLTD--P-NDHTK-YS------LDI 1559 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~-i~~ilp~Ll~~l~d--~-~~~~r-~a------l~~ 1559 (2622)
+++.|.++..++.+.++.+.+.=....+. ++.+++.+.. .+ .+.+...+.+.+.+ + ++... .+ +.+
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 89999999999999988766554444433 3455544431 12 25566667776653 1 11111 12 222
Q ss_pred HHhc--ccc--ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000050 1560 LLQT--TFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2622)
Q Consensus 1560 L~~~--~~~--~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~v 1635 (2622)
+... .+. ..+-...-+.+.|.+.-.+...-.+.-..++.++..+--. .+++.|-+-.+.+.+.+.+.+.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~---- 694 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD---- 694 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh----
Confidence 1110 000 0011112223344444444444445555555555443221 1345555555555555555443
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC--CChhhH
Q 000050 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVR 1713 (2622)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~--~~~~vR 1713 (2622)
|-+|+++++|.+-+.+.-+.+. ... ...+...+...+.+.+.+ ....-.
T Consensus 695 ---------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~ 745 (1010)
T KOG1991|consen 695 ---------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDC 745 (1010)
T ss_pred ---------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHH
Confidence 2346777777776555433321 000 011222222222233333 344556
Q ss_pred HHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC
Q 000050 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2622)
Q Consensus 1714 ~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2622)
++++..+..+...+++....|++.++...+..+..
T Consensus 746 ~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 746 ESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 78899999999999888788888888888777766
No 35
>PRK09687 putative lyase; Provisional
Probab=99.24 E-value=8.8e-10 Score=133.79 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=168.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHH
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2622)
.+.|...|.|++..||..++..|..+ ++ +..++.+.. +.++++..+|..|+++|+.+-.. .... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~~--~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~--~~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----GG--QDVFRLAIE-LCSSKNPIERDIGADILSQLGMA--KRCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----Cc--chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCC--ccch--HHHHH
Confidence 46677888899999999988887543 21 233333333 45566778999999998875321 1111 14667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000050 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2622)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2622)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444478999999888888753221 12234566667778888889999888888654 2245678
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~ 1541 (2622)
.|+..+.+++|.+|+.++..||.+.+.. +.+++.|...++|.+..||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 8888888888888888888888773322 4566777888888888888888888887653 134455
Q ss_pred HHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhH
Q 000050 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2622)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2622)
|++.+.++ + ++..++.++|.+. + +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig----~--------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELG----D--------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcC----C--------HhHH
Confidence 54444433 2 3445666666653 2 1356
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000050 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2622)
Q Consensus 1622 ~~L~~~L~-d~~~~vR~~a~~aL~ 1644 (2622)
|.|.+++. ++++.|+..+..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 67777775 667777777776654
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.23 E-value=7.3e-10 Score=157.42 Aligned_cols=273 Identities=22% Similarity=0.251 Sum_probs=200.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
.++.|+..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..++..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999999887762 245678888899999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
.+.+...|+|+++.||.+|+.+|+.+... + ...|+..+.|++..+| .++.+|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 24566778899999999999999987521 1 2356677889988888 567777531 11 13
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll 1659 (2622)
.+...+.|.++.+|..++..|+.+... . ...++.+..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHH
Q 000050 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2622)
Q Consensus 1660 ~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii 1739 (2622)
+.+...+.++ ++.+|..++.+|+.+. . ++.++.++..+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4566666554 4568888888887642 1 234567777888899999999998888751 11 2456
Q ss_pred HHHHhhcCCCChHHHHHHHHHHH
Q 000050 1740 PAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1740 ~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
+.+...++|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 77778888989999998888775
No 37
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=1.1e-09 Score=132.80 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=189.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
-.+.++..+.|++..||..+..++..+ +-..+++.+...+.+++..+|..++.+|+.+...... ....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~-------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR-------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc-------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 356667788999999999999998766 2355677777778889999999999999998642110 2456
Q ss_pred HHHHhhh-hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1501 VPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1501 vp~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
+|.|..+ ++|+++.||..|+.+||.++.....+ ....++.+...+.|++..+| .++.+|... . -...+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------~---~~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVI------N---DEAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhcc------C---CHHHH
Confidence 6777665 78999999999999999986433222 23566677788889999998 456666431 1 13477
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~l 1658 (2622)
+.|...++|.++.+|..|...+|.+.. +. +...+.|...+.|+++.||..|+.+||.+.. +..
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~a 224 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRV 224 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhH
Confidence 899999999999999999999998722 12 3578889999999999999999999988432 478
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhcc-CCChhhHHHHHHHHH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~-~~~~~vR~~al~~l~ 1721 (2622)
+|.|++.+.++. .|..++.+++++ |. +..+|.+.+.+. +++..++..+..++.
T Consensus 225 v~~Li~~L~~~~---~~~~a~~ALg~i----g~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGT---VGDLIIEAAGEL----GD---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCc---hHHHHHHHHHhc----CC---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888888887653 566677777765 33 356777777775 678888877776654
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=2.4e-09 Score=152.17 Aligned_cols=274 Identities=21% Similarity=0.227 Sum_probs=189.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2622)
.++.|.+.|.|+++.||..+++.|..+- .+..++.|...| ++++..+|..|+.+|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 3567888889999999999999987642 234556666555 566788999999999877543221 2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
+.+...+.++ ++.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 3355566665 79999999888877541 11 1245678899999999999888876511 1
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+.++..+.++++.+|..++..|+.+....+ ..++.|..+++|+++.||.+|+.+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345667888999999999999987754321 2256677888999999999999999888642 12334
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh
Q 000050 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2622)
.+...+.|+++.+| .|+.+|... . -...++.|...++|+++.||..|...|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l------~---~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA------A---ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc------c---ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 56667777777777 456665431 0 0234567777777778888888877777641 11 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 56666677777788888887777753
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7e-09 Score=129.79 Aligned_cols=377 Identities=17% Similarity=0.165 Sum_probs=261.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HH---hHHhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQ---GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~---~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
.+.++..+...++..+-.+..+++.+.+.-. +- -...++|.+++.|. +.....+..|.++|..++.+..++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3444444444445556666666666655322 11 12578999999987 455788999999999999887766544
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-h-H-HhHHHHHHhhcCCCCh--hHHHHHHHHHhcccccc
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNT 1568 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~ilp~Ll~~l~d~~~--~~r~al~~L~~~~~~~~ 1568 (2622)
.. ...+|.+..++.+++..|++.|++||++++..-+. + + + ...++.|+..+..+.. ..|.+..++.. +...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcC
Confidence 33 35789999999999999999999999999865321 1 1 1 3567777777766654 55655555543 2221
Q ss_pred C-Ch---hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1569 V-DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1569 ~-~~---~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
. .. .....++|.|.+.+.+.+.++...|+.++..+... .++.+.-. -..++|.+..+|.++.+.++..|.+++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 1 22 35567899999999999999999999999998763 22222211 235789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH----HHhHhHHHHHhccCCChhhHHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDG 1715 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~----l~~llp~l~~~l~~~~~~vR~~ 1715 (2622)
|.++...+.. .-...+|.|...+........|..++..++.|..+..... -..++|.++..+...+...|..
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 9977644332 2346778888877755555678899999999988443321 1568999999999999999999
Q ss_pred HHHHHHHhhhhhCcchhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch------hhhh------HHHHh
Q 000050 1716 YLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPLL------LPAVE 1781 (2622)
Q Consensus 1716 al~~l~~L~~~~g~~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~------i~~l------lp~l~ 1781 (2622)
|..+++.++..-..+-..|+-. +++++...|.-.+..+-..++.++..+.+...... ...+ +..++
T Consensus 384 AawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE 463 (514)
T KOG0166|consen 384 AAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE 463 (514)
T ss_pred HHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence 9999998887655665667644 89999999977777777778888887765432111 1111 12222
Q ss_pred hccCCCchHHHHHHHHHHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..-.+++..+...|...+...
T Consensus 464 ~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 464 NLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HhhccccHHHHHHHHHHHHHh
Confidence 333445555666666666655
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.5e-08 Score=124.98 Aligned_cols=374 Identities=17% Similarity=0.150 Sum_probs=251.1
Q ss_pred CChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHH
Q 000050 1350 DKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLL 1425 (2622)
Q Consensus 1350 ~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~l 1425 (2622)
++...+..+...+..+...-. ...+-...+++.+.+++....++..+..|.-++..++.+....-.-++. ..+|.+
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~f 157 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIF 157 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHH
Confidence 344556666666665554322 2222233788888888876657999999999999999876543333332 578999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhC-chhhhhhhhh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCA-PQQLSQCLPK 1499 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~-p~~l~~~L~~ 1499 (2622)
..++..++..|++.|.-|++.++..-+.. .+ ..++++|+..+.... -...+.+.++|..++.+. |.--......
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 99999999999999999999998765443 22 467788888777654 367888999999999864 4433345678
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
++|.|..++.+.+++|..-|+||+..+.+.- ++.++ .++ -..++|
T Consensus 238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq----------------------~vi------------~~gvv~ 282 (514)
T KOG0166|consen 238 ILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQ----------------------MVI------------DAGVVP 282 (514)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHH----------------------HHH------------HccchH
Confidence 8999999999999999999999999998642 22111 111 013556
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCC---
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE--- 1653 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~--- 1653 (2622)
.+...+...+..++..|...+|++... + +.... .-...+|.+..++. ++...+|+.|...++.+.....+.
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG--~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTG--S-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeec--c-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 666677777777777788888886552 2 11111 12346788888887 666779999999999998743322
Q ss_pred -CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1654 -NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1654 -~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
.-..++|.|+..+++.+ ...|..++.+++.+..+...+.. ..+++.+...+.-.+..+-..++.++..+-..-
T Consensus 360 Vida~l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHHcccHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 23478999999998776 56899999999988776555433 345677777765556666556666666655432
Q ss_pred Ccch----hhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1728 GVQF----QNY---LQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1728 g~~f----~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
...- .+| ++. -+..+-..-.++++++.+.|.+.+.
T Consensus 439 e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 439 EAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 2111 222 221 2233333334666777766655443
No 41
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=0.00039 Score=89.61 Aligned_cols=655 Identities=14% Similarity=0.165 Sum_probs=319.2
Q ss_pred CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH----HHHHHhccccc------cCChhhhhhHHHH
Q 000050 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS----LDILLQTTFVN------TVDAPSLALLVPI 1580 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a----l~~L~~~~~~~------~~~~~~l~~i~p~ 1580 (2622)
++|.||+.|-++|.+.... ..+.-.++..+-+.-.|+ .+|-| .+..++..... .+.+..-..+-..
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~--~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~iksl 92 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDP--QIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSL 92 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcCh--hHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHH
Confidence 4678888888888877643 122233333333322232 23311 22222211111 1222233344455
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c
Q 000050 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F 1655 (2622)
Q Consensus 1581 L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-----~ 1655 (2622)
+...+-+....++....++++-++. .|+-.-+|.++|-+...++..+..+-......-.++.+....++ +
T Consensus 93 Iv~lMl~s~~~iQ~qlseal~~Ig~-----~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 93 IVTLMLSSPFNIQKQLSEALSLIGK-----RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhc-----cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 5555555567777777777776654 35666789999999999997776666666655566666554331 1
Q ss_pred --------------hhhHHHHHHHhhhcCChHH-HH---HHHHHHHHHHHHhc----hhH----HHhHhHHHHHhccCC-
Q 000050 1656 --------------PDLVSWLLDALKSDNSNVE-RS---GAAQGLSEVLAALG----TVY----FEHILPDIIRNCSHQ- 1708 (2622)
Q Consensus 1656 --------------~~ll~~Ll~~L~~~~~~~~-r~---~a~~~L~~i~~~~g----~~~----l~~llp~l~~~l~~~- 1708 (2622)
.+++...++..+....... .. +...-++.+.-.+. +++ ++..|+.+.+.+...
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~ 247 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN 247 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence 1111111222222211111 00 11111122222221 122 345566666665522
Q ss_pred ------------ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHH--hh
Q 000050 1709 ------------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE-----SVRDAALGAGHVLVEH--YA 1769 (2622)
Q Consensus 1709 ------------~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~-----~VR~~al~al~~lv~~--~~ 1769 (2622)
-..+|...+..+.-.+....+.|.||+++++......+..-.. .....|+..+..+.+. |.
T Consensus 248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~ 327 (960)
T KOG1992|consen 248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA 327 (960)
T ss_pred cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 1346777788888888888899999999999988888765433 3334455555544431 11
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH--hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHH
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~--~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~ 1847 (2622)
. ...++ ..+..+... +++..-+...++..|| +..++.+ +-+.
T Consensus 328 ~------------~F~~~---------~vl~~i~e~VvlpN~~lR~eDeElFED---~pleYiR------------RDlE 371 (960)
T KOG1992|consen 328 E------------LFEGE---------NVLAQICEKVVLPNLILREEDEELFED---NPLEYIR------------RDLE 371 (960)
T ss_pred h------------hhcch---------HHHHHHHHhhcccccccchhhHHHhcc---CHHHHHH------------Hhcc
Confidence 0 00000 011111111 1111100000000001 0111100 0000
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhccc-----
Q 000050 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER----- 1919 (2622)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~----- 1919 (2622)
-+|.+ .=|++|++.++.+..+.......++..-++.++.... +.+|..+..++..+..+..+.+..
T Consensus 372 -----GsDvd-TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 372 -----GSDVD-TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred -----cCCcc-hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence 02322 3478899999999998876666666666655555443 457777777777777776553211
Q ss_pred -------h----hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHH
Q 000050 1920 -------V----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2622)
Q Consensus 1920 -------~----l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~a 1988 (2622)
+ ...++|-|..--..+.|-++.++..-+-..=.. .-.+++..++|.+...+..+..-|...|+.+
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGKEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc----CChHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 1 123444433311123455555544322211111 1245677888999999988889999999999
Q ss_pred HHHHHHHhC--------hhhhhh----hHHHHHHhcccCC--chhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHH
Q 000050 1989 FSTLFKSAG--------MQAIDE----IVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054 (2622)
Q Consensus 1989 l~~l~~~~g--------~~~~~~----ilp~Ll~~L~~~~--~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~ 2054 (2622)
+..+....+ +..+.+ ++..|.+.++.++ +.++-.+++..+++...+.
T Consensus 522 iEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~------------------- 582 (960)
T KOG1992|consen 522 IEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSA------------------- 582 (960)
T ss_pred HHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHh-------------------
Confidence 998753222 222222 1222223332222 2244444444444322222
Q ss_pred HHHHHHHHHhCCChhhhHhhhHHHHHHhc----CC-CCHHHHHHHHHHHHHhhhccChhc-------HHHHHHHHHhhcC
Q 000050 2055 HALGALAEVAGPGLNFHLGTILPALLSAM----GD-DDMDVQSLAKEAAETVTLVIDEEG-------VESLVSELLKGVG 2122 (2622)
Q Consensus 2055 ~aL~sLa~~~g~~l~~~l~~il~~Ll~~l----~~-~~~~vr~~a~~al~~l~~~~~~~~-------l~~ll~~Ll~~l~ 2122 (2622)
..|+.+.+++.|.+.+ ++ .++.--....++++.++......+ ...++|.+..-+.
T Consensus 583 -------------i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 583 -------------IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS 649 (960)
T ss_pred -------------hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 2233333333322221 11 123333333444444443322111 2233333333333
Q ss_pred CCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhh
Q 000050 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2622)
Q Consensus 2123 d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2622)
.+-.+.--.+.+.++.+.+.+...+.+.+..+++.|+. .+.|+ .+...|.++..++..+..
T Consensus 650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs----------p~lW~---------r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS----------PNLWK---------RSGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC----------HHHHh---------hcCCcHHHHHHHHHHHhc
Confidence 22222333455566666665544443333333333321 11111 112233444333333321
Q ss_pred chhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcC
Q 000050 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2622)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~ 2282 (2622)
... .++ ..+.+.+++.+|...+.+...+ ..+...+..+....++..+.||+.++.+-|.+-++.
T Consensus 711 g~~-----------~~~---~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 711 GSQ-----------IVE---AADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred Cch-----------hhc---ccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 100 011 1134667888887777655443 467888899999998888999999999999998887
Q ss_pred CCCHh
Q 000050 2283 RFPWQ 2287 (2622)
Q Consensus 2283 ~~~~~ 2287 (2622)
.....
T Consensus 775 skT~k 779 (960)
T KOG1992|consen 775 SKTEK 779 (960)
T ss_pred cCcHH
Confidence 54444
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00043 Score=89.27 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=175.0
Q ss_pred HhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000050 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2622)
Q Consensus 1409 ~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~ 1488 (2622)
-++..|++++..-++...+.+.-.+|..+....++ .++ -..|..-|+.+.-.+..
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~--------------~~l-----------~~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA--------------TVL-----------DKLKAQICEIFNLYATK 277 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccc--------------cHH-----------HHHHHHHHHHHHHHHHh
Confidence 35566777777777777777764444433211000 000 02355567777767777
Q ss_pred CchhhhhhhhhhHHHHhhhhcCCCHHHH--HHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHH
Q 000050 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2622)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR--~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L 1560 (2622)
.++.+...+++++...+.++.+..+..| ..+..|+.-+..+...+.+ +.++..+.+...=|+-..|..-+.+
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeEl 357 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEEL 357 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHH
Confidence 7888888999999888888876554443 3444556655555544433 3455555555444443333211111
Q ss_pred HhccccccCChhhhhhHHHHHHhhhcCCCHH-HHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHH-HhcC--CCHHHH
Q 000050 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAE-TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVR 1636 (2622)
Q Consensus 1561 ~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~-~L~d--~~~~vR 1636 (2622)
. -..-+..+.+.++..+.+ -|+.|++.+..+|..+.. .+.+....-+..+.. ...+ .+|.-.
T Consensus 358 F------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~--~vt~v~~~~v~~~l~~y~~nPS~nWk~k 423 (960)
T KOG1992|consen 358 F------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG--QVTGVFSSEVQRLLDQYSKNPSGNWKKK 423 (960)
T ss_pred h------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhccCCCcccccc
Confidence 1 112455667777665555 466789999999987632 333444444444433 2233 468888
Q ss_pred HHHHHHHHHHHhhhCCC--------CchhhHHHH----HHHhhhc---CChHHHHHHHHHHHHHHHHhchhHHHhHhHHH
Q 000050 1637 SVAARAIGSLIRGMGEE--------NFPDLVSWL----LDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILPDI 1701 (2622)
Q Consensus 1637 ~~a~~aL~~L~~~~g~~--------~~~~ll~~L----l~~L~~~---~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l 1701 (2622)
..++..+.+++...+.. .+-++...+ ...|.+. +....+.++..-+-..-..+|+..+-.++|.+
T Consensus 424 d~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~l 503 (960)
T KOG1992|consen 424 DRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRL 503 (960)
T ss_pred chhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHH
Confidence 88888888888754322 111222222 2222221 11122333322222333456777788899999
Q ss_pred HHhccCCChhhHHHHHHHHHHhhhhhCc---------chhhhHHhHHHHHHhhcC
Q 000050 1702 IRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1702 ~~~l~~~~~~vR~~al~~l~~L~~~~g~---------~f~p~l~~ii~~ll~~L~ 1747 (2622)
+..+.....-|-..|..++..+....+. ...||+..++..+++.++
T Consensus 504 i~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 504 IRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred HHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 9999999999999999999888765443 456777777777776665
No 43
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.0024 Score=84.78 Aligned_cols=390 Identities=13% Similarity=0.113 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHhCCC--hhhhHh-hhHHHHHHhcCCCCHHHHHHHHHHHHHhhh-ccC-hhcHHHHHHHHHhhcC-CCCh
Q 000050 2053 NAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VID-EEGVESLVSELLKGVG-DNQA 2126 (2622)
Q Consensus 2053 ~~~aL~sLa~~~g~~--l~~~l~-~il~~Ll~~l~~~~~~vr~~a~~al~~l~~-~~~-~~~l~~ll~~Ll~~l~-d~~~ 2126 (2622)
+.+++|+|++..... +...+. -+.+.++-.+.++..-+|..+++.++.+.. .+. ...+.+.+....+.+. |.+.
T Consensus 438 AL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~l 517 (1010)
T KOG1991|consen 438 ALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNEL 517 (1010)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcC
Confidence 556777777654321 222222 233444555677778899999999988863 333 3447788888888887 7889
Q ss_pred hHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhc
Q 000050 2127 SIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~---~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~ 2203 (2622)
.||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+......+ .++...+.+..|-.++ +
T Consensus 518 PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme---~iV~~fseElsPfA~e-L------- 586 (1010)
T KOG1991|consen 518 PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVME---KIVCKFSEELSPFAVE-L------- 586 (1010)
T ss_pred chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHHhhchhHHH-H-------
Confidence 999999999999987654 4489999999999999998766554443332 2322222222111111 1
Q ss_pred hhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-----CCHHHHH-HHH---HHHHHHHhhcCh-hhhhhhhhhhh
Q 000050 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-----GSAELRE-QAA---LGLGELIEVTSE-QSLKEFVIPIT 2273 (2622)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-----~~~~~r~-~aa---~~L~~l~~~~~~-~~l~p~v~~i~ 2273 (2622)
.+.+...|.+.+++ ...+.+. .|. .++..+...... ..+-.++..+.
T Consensus 587 -----------------------~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~ 643 (1010)
T KOG1991|consen 587 -----------------------CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIV 643 (1010)
T ss_pred -----------------------HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11122233333332 1122222 222 333344333220 11222333333
Q ss_pred HHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC----hhh
Q 000050 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----VDP 2349 (2622)
Q Consensus 2274 ~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~----~~~ 2349 (2622)
-|.+..+-..+-.++-..++.....+-- .-..+.|-.=+|.+.+.+++.+..-..-....-+|-.++.++.. -..
T Consensus 644 l~vi~~iL~~~i~dfyeE~~ei~~~~t~-~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 644 LPVIGFILKNDITDFYEELLEIVSSLTF-LSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhh-hhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 3333332221122233333333222211 11123343445677778888887766777777777777554321 111
Q ss_pred HHHH---HHHh-hhc--CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhh
Q 000050 2350 LVGD---LLSS-LQV--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2350 ll~~---Ll~~-l~~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
|... ++.. +.+ .+..=+..+.+-+..++.+++..+ +.+++..+......+.. .+...|..+.++.-+..-+
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~-dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyy 801 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL-DQYIPLFLELALSRLTREVETSELRVMLLEVVINALYY 801 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH-hhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 2222 2222 222 123446667888888888887743 45666666665555554 4555677766665544434
Q ss_pred cCchHH-------------HHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhh
Q 000050 2422 MEDGQL-------------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2622)
Q Consensus 2422 ~~~~~~-------------~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~ 2481 (2622)
.|...+ ...+..+..+..-.+ +.-++++|..++.-.+..-+.......+.+.+....
T Consensus 802 nP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HD---kKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~ 871 (1010)
T KOG1991|consen 802 NPKLTLGILENQGFLNNFFTLWFQFINQFKKVHD---KKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELL 871 (1010)
T ss_pred CcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 443221 111122222222112 445788888887653322221222235555555433
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-05 Score=102.53 Aligned_cols=491 Identities=19% Similarity=0.188 Sum_probs=286.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPT 1969 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~ 1969 (2622)
+..+|.+.....+..|.+-+-.++.+ |.+ ...++|.+.+-....+.++|.-+..-|-.-.+.-....+ --+..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~-G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK-GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHH
Confidence 34445665555555554433333322 332 566777777777788999988777666655443322221 12566
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCC
Q 000050 1970 IRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049 (2622)
Q Consensus 1970 l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~ 2049 (2622)
+.+.|.|+++.+|..|.+++..+-- .-+.|.
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI------------------------------------------ 143 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV-------PMIAPI------------------------------------------ 143 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHH------------------------------------------
Confidence 7889999999999998887765521 111111
Q ss_pred chHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHH
Q 000050 2050 SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIR 2129 (2622)
Q Consensus 2050 ~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR 2129 (2622)
++-++-+...|..+.||..++.|+-++- +.+.+.-+.+...+-..+.|.++.|-
T Consensus 144 -------------------------~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 144 -------------------------MLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHHHHHHHHHHHhcCCCCcch
Confidence 1112223345677888888888887764 34555555777777888889999999
Q ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhh
Q 000050 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
-+|+.++..+|-.. .+.+..-.+.+++++-|-|+==+--....|.+.++..-.+ |..+. ..+...+.....
T Consensus 198 gsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~--P~~~~---~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 198 GSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD--PTVVD---SSLEDNGRSCNL 268 (968)
T ss_pred hHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC--ccccc---cccccCcccccc
Confidence 99998888877432 2223444566777765544322222334444443321110 00000 000000000000
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHH----HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCC
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQ----GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~----~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2622)
. ....+...|-...+=+..|++ .|.+.++.+-..++.+...++-.. -+..|..||+|.|.+ +
T Consensus 269 ~-----~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs--~ 334 (968)
T KOG1060|consen 269 K-----DKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS--N 334 (968)
T ss_pred c-----ccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc--C
Confidence 0 001111122122333334443 344556666666666655554221 356678899999976 6
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhH
Q 000050 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 2365 (2622)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~v 2365 (2622)
..++...|..+..+..+-+..+.||+..+ | -+-+| ...++.-=...|..|+. ..++..+++++..-+++.|..+
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsF---f-v~ssD-p~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSF---F-VRSSD-PTQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRSF 408 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhce---E-eecCC-HHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchhH
Confidence 78999999999999988887777765321 1 11122 23444444555555543 3578899999999999888778
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCC-ch
Q 000050 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS-WA 2444 (2622)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~-~~ 2444 (2622)
-..+++|++.+....+. ..+.++.-|..++++.++.|-..++..|..|....|.+. .+++.++...+.+-. ..
T Consensus 409 aa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp~ 482 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVPA 482 (968)
T ss_pred HHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhhh
Confidence 88888888877665443 456778888888888899999999999999999888754 233333322111100 01
Q ss_pred hhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000050 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2622)
Q Consensus 2445 ~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2622)
.|. ..++ ++.+.-+. .+....+++..+.....+++..++-..+.-..++....
T Consensus 483 ARA---~IiW-Lige~~e~--vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 483 ARA---GIIW-LIGEYCEI--VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred hhc---eeee-eehhhhhh--cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEec
Confidence 121 1111 11111112 23456678888888888888888888887777766553
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.84 E-value=1.5e-05 Score=106.09 Aligned_cols=302 Identities=15% Similarity=0.148 Sum_probs=198.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHH
Q 000050 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2622)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp 1502 (2622)
++.++.+.+.+.-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.......... =.++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7888887776666788899999999887776 58888999999999999999999999999887654322211 257899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHH
Q 000050 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2622)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~ 1582 (2622)
.+..++.|++..|.+.|.++|..+++.- +..+.+++ + ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998642 22221100 0 0123334
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-CCCc--hh
Q 000050 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 1657 (2622)
Q Consensus 1583 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g-~~~~--~~ 1657 (2622)
..+...+..+|..+.+++..++..- .+...+.. .+++.+...+.+++.-+|..+...++.++..-. -+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~S---~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASHS---PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhcC---HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 4444445567777777777776532 23333433 388888888899999999999999999998211 1122 35
Q ss_pred hHHHHHHHhhhcCChH-----HHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhC
Q 000050 1658 LVSWLLDALKSDNSNV-----ERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2622)
Q Consensus 1658 ll~~Ll~~L~~~~~~~-----~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g 1728 (2622)
+++.+.+.+.+..... .-.+.....+.+... .+. ..+.++..+.+...+.+...+..|+.+++.++....
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6777777775443222 111222233444433 222 224555566666778899999999999999986542
Q ss_pred c-ch-----hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1729 V-QF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1729 ~-~f-----~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
+ .+ .+-+..++..+.........++|..++.++..++.
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 2 11 12233444444445555555566666666655543
No 46
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.002 Score=82.88 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhC--CCCchhhHH----HHH
Q 000050 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMG--EENFPDLVS----WLL 1663 (2622)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~~g--~~~~~~ll~----~Ll 1663 (2622)
-.|+..+.++|...+. .-+.+ ..+.+-..+.++++|. +--||-++++++..++.-.. ++.|.+++| .++
T Consensus 502 iiRRRVa~ilg~Wvsv-q~~~e---~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSV-QQKLE---LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHHhhhhhe-echHh---HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 4567777777776552 22222 2334566677778876 77899999999999887433 444444444 444
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHHhchhH------HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHh
Q 000050 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVY------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2622)
Q Consensus 1664 ~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~------l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ 1737 (2622)
+.++.-.....|......++.++...+... +-.++|.+.+... ..+-+|-+.+..+..+...+|..-.++.+-
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHH
Confidence 455444434456666667777777666532 1234455544432 567789999999999999999643333333
Q ss_pred HHHHHHhhcCC---CChHHHHHHHHHHHHHHHH
Q 000050 1738 VLPAILDGLAD---ENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1738 ii~~ll~~L~d---~~~~VR~~al~al~~lv~~ 1767 (2622)
++|.+--+..- ++-..-+.++.-+.....+
T Consensus 657 L~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 657 LYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 44544433322 2223344455555555443
No 47
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.80 E-value=1.6e-07 Score=113.08 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=141.4
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
.+.+.+.+...+.+|..|..+++-+..++..- . ..+ ....+.+.+ ..++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~-----------~~~-----~~~~~~~~l-----~~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--A-----------PED-----FPPDFVECL-----RQLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHH-----H---HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--C-----------ccc-----cHHHHHHHH-----HHhHHHHHHHHh
Confidence 34455555557889999999999999887541 0 000 001122221 234456666778
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhH-HHHHhhhcC
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~ 1933 (2622)
|....|-..|+.+++.++...+..+.++++.++|.+++.+++.+..+|..|..+|..+++.++ ..+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999999999999999999999998776 23455 777888899
Q ss_pred CCChhhHHhHHHHHHHHHHhhC--hhhHHH--hHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~--~~~l~~--~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
++++.+|..++.++..++...+ ...+.. .++.+.+.+.+.+.|++++||+.|..+|..+++..|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999998887 333332 45889999999999999999999999999999888764
No 48
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.79 E-value=6.9e-05 Score=99.89 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHh-hHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC
Q 000050 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2622)
Q Consensus 2245 ~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~ 2323 (2622)
+|..|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 57788889999999988 5666666666666666665432222 4455666666677677777777 5577778888999
Q ss_pred CCCHHHHHHHHHHHHHHHhccc--ChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 000050 2324 DSTRTVRSSAALALGKLSALST--RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2324 d~~~~vR~~Aa~aLg~L~~~~~--~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2622)
.++..+|.+|++|+|.+.+... .....+..++..+.+.+.-+|.....-+-+++...+.....+|..-++.+|...++
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 9999999999999999965432 23345556666665555444444444444444444433346788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2402 HDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
|..+.+|.++.+++..+....|.
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999877653
No 49
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.76 E-value=2.3e-07 Score=111.68 Aligned_cols=182 Identities=25% Similarity=0.313 Sum_probs=132.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA-------TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~-------~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~ 1419 (2622)
..+.+|..|..|..-|..++.+...... ...+++ .+...+.+. +..+-..|+.++..++..++..|.+|+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4567899999999999999987621111 112333 333444444 4556678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh-HHHHHhhccCCChhhHHHHHHHHHHHHhhCc---hhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i-lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~~ 1495 (2622)
.++|.++..++|++..+|++|..++..++...+ ....+ ++.+..+..++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998876 12234 6777778999999999999999999887766 44433
Q ss_pred --hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1496 --~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
.++.+++.+..++.|++++||++|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999887763
No 50
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.7e-05 Score=99.09 Aligned_cols=412 Identities=16% Similarity=0.163 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCCh
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~ 1937 (2622)
...+++--.+++.++.+ +. +..++|.+++...+.+.++|....--|-+.++.-++-.+ --+..+++.|.|+++
T Consensus 50 ~~KleAmKRIia~iA~G--~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKG--KD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSINTFQKALKDPNQ 122 (968)
T ss_pred HHHHHHHHHHHHHHhcC--Cc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHHHHHhhhcCCcH
Confidence 34445444555555543 22 334455556666777877776655444444433222111 124567788888888
Q ss_pred hhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC-
Q 000050 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ- 2016 (2622)
Q Consensus 1938 ~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~- 2016 (2622)
-+|.-|+..+..|- +.-..+-++-.+.++..|+.+.||..|+.|+-+++. .++...++++..+-..|.|..
T Consensus 123 LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 123 LIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCC
Confidence 88888777776541 111224445556677788888888888888888865 333333344433333444433
Q ss_pred -chhHHHHHHHHHHhhhccccccc------hhhhhhcCCCchHHHHHHHHHHHHhCCCh---------------------
Q 000050 2017 -TSDTALDGLKQILSVRTTAVLPH------ILPKLVHLPLSAFNAHALGALAEVAGPGL--------------------- 2068 (2622)
Q Consensus 2017 -~~~~aL~~L~~il~~~~~~ilp~------Lip~L~~~~~~~~~~~aL~sLa~~~g~~l--------------------- 2068 (2622)
.-+.|+-++.++|-.+-+.+=++ ++|.+.+. ...-.+..|.+.+...|
T Consensus 195 lVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeW----gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~ 270 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEW----GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKD 270 (968)
T ss_pred cchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhh----hHHHHHHHHHHHHHhcCCCccccccccccCcccccccc
Confidence 23566667777664332211111 11111110 11222233322211110
Q ss_pred ------hh-----hHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 000050 2069 ------NF-----HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIG 2137 (2622)
Q Consensus 2069 ------~~-----~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~ 2137 (2622)
.| -+.-++...--.+.+.++.+-.+++.++-.+. +......+...|+..+++ +..+|...+..+.
T Consensus 271 ~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA---P~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa 346 (968)
T KOG1060|consen 271 KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA---PKNQVTKIAKALVRLLRS-NREVQYVVLQNIA 346 (968)
T ss_pred cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC---CHHHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Confidence 11 11122222222233444444333333333222 223566677777777765 4778888888888
Q ss_pred HHHhhccccccccHH------------------------------HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc
Q 000050 2138 YFYKNSKLYLVDEAP------------------------------NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE 2187 (2622)
Q Consensus 2138 ~l~~~~~~~l~~~~~------------------------------~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~ 2187 (2622)
.++...+.-|.+|+. .+++.+..-+.+.|.++..++..|+++......
T Consensus 347 ~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-- 424 (968)
T KOG1060|consen 347 TISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-- 424 (968)
T ss_pred HHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--
Confidence 887766655555542 222222222233333333333333333322111
Q ss_pred chhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhh
Q 000050 2188 VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE 2267 (2622)
Q Consensus 2188 ~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p 2267 (2622)
.--...+.-|++.+.+.+..+-.++...|..++..-+.+.+
T Consensus 425 -------------------------------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-- 465 (968)
T KOG1060|consen 425 -------------------------------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-- 465 (968)
T ss_pred -------------------------------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH--
Confidence 01122455566666666777777888888888876653321
Q ss_pred hhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000050 2268 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2622)
Q Consensus 2268 ~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L 2340 (2622)
.++.-|.+.+..-.-+.-|..+++.+|+.+...+. ..|.+.+.+.+.+.|+...||......-.+|
T Consensus 466 ---~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 466 ---EILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred ---HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 12233445554333556788899999999887653 4689999999999999999999998877776
No 51
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.67 E-value=0.00054 Score=91.81 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChh-HHHHH
Q 000050 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQAS-IRRSS 2132 (2622)
Q Consensus 2054 ~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~-vR~~A 2132 (2622)
...+.+++..+|..+.+ +-+.+|.++......+..+|..+..|++.+......+....++..++..+++.+.- .|+.+
T Consensus 797 ~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a 875 (1549)
T KOG0392|consen 797 FEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGA 875 (1549)
T ss_pred HHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhH
Confidence 34555666666777777 77888999999999999999999999999987666666777777788788775544 45566
Q ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC
Q 000050 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2622)
Q Consensus 2133 ~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~ 2185 (2622)
...+..+.......+.+|.+-+++.|+..+.|....||.++-.++..++...+
T Consensus 876 ~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 876 DELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred HHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 66677777777778889999999999999999999999999999999987665
No 52
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.67 E-value=0.01 Score=88.54 Aligned_cols=459 Identities=19% Similarity=0.247 Sum_probs=215.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP 1922 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2622)
..+..++..+.|....++.++...++.++...|..+-+.+.........-+. +....+......-+..++......+.+
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 3455567778899999999999999999988886554444433222222111 222222233333333333322222223
Q ss_pred hH---HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCh
Q 000050 1923 SI---IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1923 ~l---lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.+ +-.+...+.+++..+-..+...+++++...+ ..+..+.+.+.+.+.+.+.|. ...-|.++.++++.+....|.
T Consensus 645 ~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 645 YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccce
Confidence 22 2333334556666666777788888876544 445555567777777777665 445567777888888766554
Q ss_pred hhh-----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHh
Q 000050 1999 QAI-----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2622)
Q Consensus 1999 ~~~-----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~ 2073 (2622)
... +.++..+.+.+..+. ++..+..++..+. .+|. ..||..
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te~--------------------------------~~~ir~~~v~~~g-~~g~-~d~~~~ 769 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTEQ--------------------------------SSTIRREAIRLLG-LLGA-LDPYKH 769 (2341)
T ss_pred EecccccChHHHHHHHHHHhHhh--------------------------------hhHHHHHHHHHhh-hhcc-cchhHH
Confidence 211 122222222222111 1111111222111 1121 122222
Q ss_pred hhHHHH--HHhcCC-CCH-HHHH-HHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHhhccccc
Q 000050 2074 TILPAL--LSAMGD-DDM-DVQS-LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYL 2147 (2622)
Q Consensus 2074 ~il~~L--l~~l~~-~~~-~vr~-~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~-~A~~~L~~l~~~~~~~l 2147 (2622)
...... .+.... ... ..+. ....... ..++-....-+..+...++|....... ..+.+.-.++...+.+.
T Consensus 770 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~ 845 (2341)
T KOG0891|consen 770 KVTEGTSASKISSEQIKSDIDISLLESGVNP----SNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKC 845 (2341)
T ss_pred HHHhhhhhHhhhhccccccchHHHHHhhhhh----hhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccch
Confidence 111111 111110 000 0111 0000000 001111111222444445554333332 33344455565556666
Q ss_pred cccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2148 ~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
..+.+.+++.++..........+.....-+....-. .+..+
T Consensus 846 ~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~---------------------------------------~~~h~ 886 (2341)
T KOG0891|consen 846 VLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAI---------------------------------------VRQHI 886 (2341)
T ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhc---------------------------------------cchhH
Confidence 777777777776654311111111110000000000 00111
Q ss_pred hhhHHHHHHHHccC---CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC
Q 000050 2228 QPLLPIFLQGLISG---SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~---~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2622)
.+.++.....+... +..........+.++....+ ..++.+++....-.+... .......+......+..+. ..|
T Consensus 887 ~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~-~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~-~~~ 963 (2341)
T KOG0891|consen 887 RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALG-GEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQ-KFG 963 (2341)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhhccchheee-cccccchHHHHHHhhHHHH-hcC
Confidence 11222222212111 12222233444455555555 567777776655555544 3223333333333333332 234
Q ss_pred CCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhc---ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhh
Q 000050 2305 IALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~---~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2622)
.....+..-+.+..++.+.++ ...+|..+..+.+.+..- ..........++..+..+ .+++..+...+..++..
T Consensus 964 ~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~ 1042 (2341)
T KOG0891|consen 964 SNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQ 1042 (2341)
T ss_pred ccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHh
Confidence 444455566777888888887 788999999999988431 111112233345555555 78888888888888887
Q ss_pred cCCCC
Q 000050 2380 AGKSV 2384 (2622)
Q Consensus 2380 ~g~~~ 2384 (2622)
.|...
T Consensus 1043 ~~~~~ 1047 (2341)
T KOG0891|consen 1043 LGKDF 1047 (2341)
T ss_pred hcCce
Confidence 77655
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00086 Score=85.30 Aligned_cols=253 Identities=13% Similarity=0.169 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
....+-+-++..++...+.||..|...+-.++-..+ +.++..+|.+.+.|++++..+..+|+..+..+|...|+-..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence 445788889999999999999999888877777664 46788999999999999999999999999999998887543
Q ss_pred hhhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcC-ChhH-HhHHHHHHhhcCCCChh--HHHHHHHHHhcccccc--C
Q 000050 1497 LPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--V 1569 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~ilp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~--~ 1569 (2622)
.+-|.+++++.++ |..|= .+-|.-|+...+ .|.+ ..++|.|.+.+...... +=+|+.+++....... .
T Consensus 218 --~LAP~ffkllttSsNNWmL---IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVL---IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred --cccHHHHHHHhccCCCeeh---HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 3556677777654 33222 333444443322 2333 56777777776544322 1268887765433222 3
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
...+....+..|...+.|.+++.|.-++-+++.++. +.|+.+..+. ..+.++|.|.++.+|-.|...+-.++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs- 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS- 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-
Confidence 345667778888888899999999999999999887 4555544443 455678899999999999888877765
Q ss_pred hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 000050 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2622)
Q Consensus 1650 ~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~ 1686 (2622)
++.+.+++..||..+...+...-|-..+..+-++|
T Consensus 366 --kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 366 --KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred --hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 45677888888877765544333444333333333
No 54
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.65 E-value=8.3e-06 Score=108.60 Aligned_cols=347 Identities=22% Similarity=0.248 Sum_probs=227.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCch-H
Q 000050 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2622)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-~ 2312 (2622)
+...+.+.+.++-..++.+|..+.+...+..+ .+++.+.|.+.|.. .++.||..++..++.+.+.......... +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777778888889998877665544 45556667888876 4789999999999888764432222111 4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhH-----HHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChH
Q 000050 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2622)
Q Consensus 2313 ~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~l-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2622)
.+.+.++.++.|++..|...|+.+|..++...+..+.+ +..|...+..++..+|..+++.+.++........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998765555555 5666666666577888888888877765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHH-----HHHHHHHhhc---CCCC-ch--hhHhHHHHHH
Q 000050 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLA-----DLLQELLNLA---SSPS-WA--ARHGSVLVFA 2454 (2622)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~-----~~l~~ll~~~---~~~~-~~--~r~~~~~~L~ 2454 (2622)
+.. .+++.+...+.++|.-++.++.++++.++. .+. ... .+++.+.+.+ ..+. .. ..-+.....+
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-Chh-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 222 377788888888777799999999999998 322 211 1222332222 1111 10 0011112333
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcC---CCCchhhHhHHHHHHhhcCCCCHH
Q 000050 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSE 2531 (2622)
Q Consensus 2455 ~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~l~~~l~d~s~d 2531 (2622)
.+....|..+. .....++..+.+...+.++..+..|+.++|.+......+. ..........+..+.......+.|
T Consensus 275 ~la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 275 NLARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33333455443 2345677888888899999999999999997743321100 000123456677777778888899
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhh-------------hcCCcchhhchhHHHHHHHhccccc
Q 000050 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAEC-------------LKDGSTPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2532 vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~-------------~~~~~~~vk~aae~a~~~~~~~~~~ 2590 (2622)
+|..++.++..+-...++.-...+..+...+|+. ++-|=..+|.|+.+-+.+++.-+-+
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 9999999999997665542222233444444444 4445566899998888888765544
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.3e-05 Score=100.55 Aligned_cols=385 Identities=16% Similarity=0.207 Sum_probs=231.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
+.+.+.+-|+..+.-+...|+.+++.++ +++..+.+.|.+.+.+++.++.+|..|+.|...+.+..+.- ...+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l----~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL----VEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH----HHHh
Confidence 4455556677777777777777777664 56778899999999999999999999999999998776533 2345
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------cchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCch
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 2228 (2622)
+.....++.+.+..|.-+...-+..+++..+. +..+.++..+++.....-.. ...+.|.+.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ysp--------eydv~gi~d----- 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSP--------EYDVHGISD----- 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------ccCccCCCc-----
Confidence 56666777888888888777777777776442 33455555555544321111 133444443
Q ss_pred hhHHH----HHHHHccCCHHHHHHHHHHHHHHHhhcCh------hhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHH
Q 000050 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2622)
Q Consensus 2229 ~ilp~----ll~~L~~~~~~~r~~aa~~L~~l~~~~~~------~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~ 2298 (2622)
|++.+ ++..|..++.+..+.....|+.++..+.. ..+-..|..| +.=+.+...|..|+.+||.
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI-------~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI-------MDIRSNSGLRVLAINILGK 320 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-------HhccCCchHHHHHHHHHHH
Confidence 33332 23445556666666667777777765531 1122222111 1111244556666666665
Q ss_pred HHHhcCCCcc---------------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCH
Q 000050 2299 IIRKGGIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2622)
Q Consensus 2299 L~~~~~~~l~---------------p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~ 2363 (2622)
++..-+..++ .-+.+-+.+++.||+|++..+|.+|.+-+-.|.. ..++..++.+|+.-+...|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccH
Confidence 5443222111 1234567799999999999999999998877754 45788899999998877777
Q ss_pred hHHHHHHHHHHHHHh------------------hcCCCCChHHHHHHHHHHHHhhcC---------------------CC
Q 000050 2364 GIREAILTALKGVLK------------------HAGKSVSSAVKIRVYSVLKDLVYH---------------------DD 2404 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~------------------~~g~~~~~~~~~~i~~~L~~~l~~---------------------~~ 2404 (2622)
+.|.....-+.++.. .+|.-+.+.....++.++.+.+.+ +.
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhh
Confidence 777666555555544 344444444444444444333211 22
Q ss_pred HHHHHHHHHHHHHHHhhc------------CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2405 DHVRVSAASILGIMSQCM------------EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~------------~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
+.....+.-|||.-+..+ .++++...+.+++....+. ..++..+..++..+....+.. .++
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~r 552 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SER 552 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHH
Confidence 334556778888776222 1234556666665543333 333433333443333332221 456
Q ss_pred HHHHHHhhhccCChhHHHhHHH
Q 000050 2473 ILDRLKSSLKDEKFPLREASTK 2494 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~ 2494 (2622)
+-..+.+...+-+.+++..|++
T Consensus 553 i~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 553 IKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHhcccccHHHHHHHHH
Confidence 6666777777778888888776
No 56
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.63 E-value=0.013 Score=81.10 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhccCCChh
Q 000050 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2622)
.+..+...+-.++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 34455555555554332 33333444555667788999999999999999997743322 1245555666778888999
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCChh
Q 000050 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~~ 1552 (2622)
+|.+|++++|...-+.|+...+++..| .+-..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 999999999998888777766655555 4557899999999999999999986543 23445555666666676554
Q ss_pred HH
Q 000050 1553 TK 1554 (2622)
Q Consensus 1553 ~r 1554 (2622)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 43
No 57
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.1e-06 Score=100.56 Aligned_cols=307 Identities=14% Similarity=0.142 Sum_probs=202.3
Q ss_pred HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC--
Q 000050 1457 KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 1532 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-- 1532 (2622)
..++|.+++.+++ +.--.+..|.++|.+++.+...|..... ...+|.+.++|.+++..||+.++||||+++..-..
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 4567888888854 3345567889999999987766643332 35689999999999999999999999999854221
Q ss_pred hhH--HhHHHHHHhhcCCCC---hhHHHHHHHHHhcc--ccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1533 PEI--ASLVPTLLMGLTDPN---DHTKYSLDILLQTT--FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1533 ~~i--~~ilp~Ll~~l~d~~---~~~r~al~~L~~~~--~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
.++ ...+..++..+.... ..+|.+--+|.... --+.-+-......+|.|.+.+...++++-..|+.+++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111 122333333332221 22344433433210 00111224566789999999999999999999999998876
Q ss_pred hcCCCCcccchHh-hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHH
Q 000050 1606 LVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1606 ~~~~~~~l~~~l~-~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~ 1680 (2622)
.. .+.+...++ .+++.|.++|.+++..++.-+.+.+|.++...... .--..++.+...|.+.. ...|..++.
T Consensus 273 g~--~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCW 349 (526)
T COG5064 273 GP--NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACW 349 (526)
T ss_pred Cc--HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhhe
Confidence 32 122222222 46788999999999999999999999998754432 11234455544454443 468899999
Q ss_pred HHHHHHHHhchhH---H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh-C-cchhhhHHh--HHHHHHhhcCCCChH
Q 000050 1681 GLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-G-VQFQNYLQQ--VLPAILDGLADENES 1752 (2622)
Q Consensus 1681 ~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~-g-~~f~p~l~~--ii~~ll~~L~d~~~~ 1752 (2622)
.++.+..+-.... . ..++|.++..+...+...|..++.++....... + ++...|+-. ++.++..+|.-.+..
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 9988866443321 1 467899999998888999999988887665332 1 344455432 677777777765555
Q ss_pred HHHHHHHHHHHHHH
Q 000050 1753 VRDAALGAGHVLVE 1766 (2622)
Q Consensus 1753 VR~~al~al~~lv~ 1766 (2622)
|-+.++++++.+.+
T Consensus 430 iiev~LD~~eniLk 443 (526)
T COG5064 430 IIEVALDAIENILK 443 (526)
T ss_pred chhhhHHHHHHHHh
Confidence 66667777776654
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.61 E-value=7.5e-07 Score=101.92 Aligned_cols=308 Identities=18% Similarity=0.170 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc--chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~--~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
.++.+.+.|.+.+..-....|+++|..++.+.... .+...+.+|.+.+++.+. +..+|+.++.++|.++... ..+.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS-~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDS-EGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCc-hhHH
Confidence 45666666644333345678999999999876432 222336788888888887 6889999999999987422 2355
Q ss_pred hHHHH--HHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1416 PYVIQ--MLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1416 ~~v~~--ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
+|+-+ .+..++..+.... ..+|.++|.....+-..-++. .+.+.+|.|.+.+.+.+..+-..||++++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 66653 5666666665433 457877776665554433332 357889999998888888888899999998887
Q ss_pred hCchhhhhhhh-hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC--hhH--HhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000050 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2622)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ilp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2622)
+..+.+...+. .+.+.|+++|.+++..|+.-|.+++|+++..-.. ..+ -..++.|...++.|.+.+| +++-++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 76555544443 4667899999999999999999999998754221 111 3456777777888888887 5666554
Q ss_pred hccccc--cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcCCCHHHHH
Q 000050 1562 QTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRS 1637 (2622)
Q Consensus 1562 ~~~~~~--~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~vR~ 1637 (2622)
.++... .+..-.-..++|.|...+..-+..+|+.||.++.+....-....+...|+ ...+..|..+|.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 422211 11122224578888888888888999999999998765422212333332 22344444444433333333
Q ss_pred HHHHHHHHHH
Q 000050 1638 VAARAIGSLI 1647 (2622)
Q Consensus 1638 ~a~~aL~~L~ 1647 (2622)
.+..|+..+.
T Consensus 433 v~LD~~eniL 442 (526)
T COG5064 433 VALDAIENIL 442 (526)
T ss_pred hhHHHHHHHH
Confidence 4444444433
No 59
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.2e-06 Score=96.16 Aligned_cols=375 Identities=17% Similarity=0.120 Sum_probs=232.8
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHH
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLV 1427 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~~~~v~~ilp~ll~ 1427 (2622)
++.....+.|+.+.+.+.... ...+. .+....+.-.+++. ++...-+|..++|.++-..++. +.--+..+=+.+++
T Consensus 58 SDnlnlqrsaalafAeitek~-vr~Vs-res~epvl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q 134 (550)
T KOG4224|consen 58 SDNLNLQRSAALAFAEITEKG-VRRVS-RESNEPVLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ 134 (550)
T ss_pred ccccccchHHHHHHHHHHHHH-HHHhh-hhhhhHHHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHH
Confidence 333344555666666554321 11111 13344455555655 5667778888888887666531 11112234445666
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh--H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHH
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~--v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~ 1503 (2622)
.++|. ..||..+..|+-.++.. ++.. + ..-+.++...-.+++-+++..+..+|.+|...-...-.-....-+|.
T Consensus 135 mmtd~-vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpv 212 (550)
T KOG4224|consen 135 MMTDG-VEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPV 212 (550)
T ss_pred hcCCC-cEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchh
Confidence 66665 45666666666666543 2221 1 23344555544567779999999999888754322211122455788
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh
Q 000050 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2622)
++.++...++.||..|+.+++.++-.-.+ | +.+. ..-+.++|.+..
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd~~~---------------------R---k~La----------qaep~lv~~Lv~ 258 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVDRRA---------------------R---KILA----------QAEPKLVPALVD 258 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhhHHH---------------------H---HHHH----------hcccchHHHHHH
Confidence 89999999999999999999999743211 1 1111 112347788888
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHH
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVS 1660 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~ 1660 (2622)
.+++.+++++-.|.-++++++.- ......-.-..-+|.+.++++++.-..-.....|+..+.-.-+.+ .-..++.
T Consensus 259 Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~ 336 (550)
T KOG4224|consen 259 LMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR 336 (550)
T ss_pred HHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh
Confidence 88888889999999999988763 111111111235688888898887666667777887776544433 1124555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHH
Q 000050 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2622)
Q Consensus 1661 ~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~ 1736 (2622)
.|...|...++...+..+...+-.++...... .. ...+|.+...+.+..-.+|...-.++..++-. +.+..++.
T Consensus 337 pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~ll 414 (550)
T KOG4224|consen 337 PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALL 414 (550)
T ss_pred HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHh
Confidence 56666766655556666766666665543322 11 34578888888888888888777777776533 33344443
Q ss_pred --hHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1737 --QVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1737 --~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
.++|.++..+.++.++||..+..|+..+..
T Consensus 415 d~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 415 DSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 389999999999999999999988877654
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.57 E-value=2.5e-06 Score=112.74 Aligned_cols=280 Identities=18% Similarity=0.295 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCCh
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPND 1551 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~~ 1551 (2622)
..|..|+++|..++.-.... ..+..++|.++.++.|+...||..|..+|..+...+++ +..+.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da-------------- 501 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA-------------- 501 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc--------------
Confidence 56778888888777533322 34788999999999999999999999999888765542 10000
Q ss_pred hHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH--h
Q 000050 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV--L 1628 (2622)
Q Consensus 1552 ~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~--L 1628 (2622)
. -| ...+.|.|...+.| ....+|..-+..++.++..... |+. +...+... +
T Consensus 502 n-----------iF--------~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle-~~q~~~~~g~~ 555 (1431)
T KOG1240|consen 502 N-----------IF--------PEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLE-LTQELRQAGML 555 (1431)
T ss_pred h-----------hh--------HhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHH-HHHHHHhcccc
Confidence 0 01 11234444444444 3344555555555555543210 111 11111111 3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-HhHhHHHHHh
Q 000050 1629 VDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRN 1704 (2622)
Q Consensus 1629 ~d~~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-~~llp~l~~~ 1704 (2622)
++++.+ ...+..++.. +...+..+...|-.+.+..+|+...+.|+.++.-+|++.- +-+++.++..
T Consensus 556 n~~nse----------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 556 NDPNSE----------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF 625 (1431)
T ss_pred cCcccc----------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Confidence 344332 0011111111 2233444555565666667888888889999999998765 5578899999
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh--hhchhhhhHHHHh
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY--ATTSLPLLLPAVE 1781 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~--~~~~i~~llp~l~ 1781 (2622)
+++.+|.+|-+.+.-+..++...|.. ...| ++|.+.++|.|..|.|-..|+.++..+++.. .+.++..++..+.
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~ 702 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVL 702 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 99999999999999888888888864 4444 7899999999999999999999999888753 3445556666666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhc
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVA 1807 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~ 1807 (2622)
..+-..+--+|.+++..+.....+++
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHhhhh
Confidence 67777887799999888887766543
No 61
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.023 Score=80.34 Aligned_cols=463 Identities=18% Similarity=0.177 Sum_probs=257.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
...++..+..+++..|..+..+++.++...+.. +...+...+...+.+ .++-.|.+-..++|.+-+..|.-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 344555666788889999999999999888776 455566666655654 577888999999999988877666667888
Q ss_pred hHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhcccCCch-hHHHHHHHHHHhhhccccccc
Q 000050 1965 ELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPH 2039 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d-~~VR~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~aL~~L~~il~~~~~~ilp~ 2039 (2622)
+-+..+.....|+. |.|+..+..++..+.+..|+.. ....+..++..|.+.... ..-..++...+ .+
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~-------~~- 1029 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF-------NG- 1029 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc-------cc-
Confidence 88888888888885 5999999999998887776532 233333334444332211 00111111111 00
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhH---------hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-hc
Q 000050 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL---------GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2622)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l---------~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2622)
-...+.+..+.|+.+.+.. ...+-...=.+..+++.++..++.|+.++-..... -+
T Consensus 1030 --------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n 1095 (2067)
T KOG1822|consen 1030 --------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN 1095 (2067)
T ss_pred --------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc
Confidence 0112233333333322221 11111111123556777888888898887553332 34
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccccc-----------------H---HHHHHHHHHHhc-CCChh
Q 000050 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE-----------------A---PNMISTLIVLLS-DSDST 2168 (2622)
Q Consensus 2110 l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~-----------------~---~~il~~L~~~l~-d~d~~ 2168 (2622)
...++..+...+.+..--.|.++..++..+....-.....| . ..+=..++.+++ ..|..
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~ 1175 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNK 1175 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHH
Confidence 77888888888877766677776766666544321111111 0 011223444554 45667
Q ss_pred HHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCC---CC---cCchhhHHHHH------H
Q 000050 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC---LP---KALQPLLPIFL------Q 2236 (2622)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~---~~---~~l~~ilp~ll------~ 2236 (2622)
.+....+.|.++......+.+...+....+.+....+.... ..+.|.. .+ .+-...++.-. +
T Consensus 1176 l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~s~~------~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~ 1249 (2067)
T KOG1822|consen 1176 LLKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDFSAS------KELSGEKDEEDEEQESGDDDTVLTTVSRTDDSK 1249 (2067)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccc------ccccccccccchhhcccchhhHHhhhccccccC
Confidence 77778888888666554444433333333333311110000 0011100 00 01111222111 1
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhh-------------------hhHHHHHh---hcCCCCHhhHHHHHH
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRI---IGDRFPWQVKSAILS 2294 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-------------------i~~~Li~~---l~~~~~~~vk~~al~ 2294 (2622)
.+..+-|..|..++.|+.+++..+. ....|.+. -..-|+|. .+-..+...|..-++
T Consensus 1250 p~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~ 1327 (2067)
T KOG1822|consen 1250 PLVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLE 1327 (2067)
T ss_pred CccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHH
Confidence 2233457778888888887765553 22222221 01113332 122236779999999
Q ss_pred HHHHHHHhcCCCccC----------chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcc-----cChhhHHHHHHHhh
Q 000050 2295 TLSIIIRKGGIALKP----------FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2295 ~L~~L~~~~~~~l~p----------~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~-----~~~~~ll~~Ll~~l 2358 (2622)
.|..+..+....-.| |.+|+...+..++.|. +++|-..|.......+..+ .++..+..-|+..+
T Consensus 1328 ~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl 1407 (2067)
T KOG1822|consen 1328 SLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSL 1407 (2067)
T ss_pred HHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhh
Confidence 999988866433333 4455566666666664 8899988888777764432 12334444555555
Q ss_pred hcCC---------------HhHHHHHHHHHHHHHhh
Q 000050 2359 QVSD---------------AGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2359 ~~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2622)
.... .-.+-+++.|..|+...
T Consensus 1408 ~k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1408 DKSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred cccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 4321 12356678999988643
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00083 Score=86.91 Aligned_cols=340 Identities=16% Similarity=0.190 Sum_probs=188.6
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 000050 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426 (2622)
Q Consensus 1347 ~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll 1426 (2622)
..+++....|.+..+...+.... .++.-.+...++++-+...+-...+|+..++..++. .....+.|-+-
T Consensus 79 ias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe 148 (866)
T KOG1062|consen 79 IASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVE 148 (866)
T ss_pred hcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHH
Confidence 34555666666666655555332 233333444443322111222344455555544443 23457788888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhh
Q 000050 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2622)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~ 1506 (2622)
..++.+++.||+.|..|+-.+....+ ..++.+++..-+.|.+++..+-.+++.++..|+...|+.+. ++.+++|.++.
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~ 226 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVK 226 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHH
Confidence 88888999999999888777755443 33455566666666666655555566666666554443221 22223333222
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhc
Q 000050 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2622)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~ 1586 (2622)
.|++ +...- ..|. --++.+.+|.++.-+=.+.+.+.
T Consensus 227 iLk~---------------l~~~~----------------yspe-------------ydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 227 ILKQ---------------LTNSG----------------YSPE-------------YDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHH---------------HhcCC----------------CCCc-------------cCccCCCchHHHHHHHHHHHHhc
Confidence 2211 11000 0000 01233445555544444555555
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDA 1665 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~ 1665 (2622)
..+.+....-.++++.++......+... -.-+...+...+. .+++.+|..|+.+||.+...-....-=--+..|+..
T Consensus 263 q~d~daSd~M~DiLaqvatntdsskN~G--nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~ 340 (866)
T KOG1062|consen 263 QNDADASDLMNDILAQVATNTDSSKNAG--NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRV 340 (866)
T ss_pred CCCccHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence 5555666666777777776532222211 0113333333333 567899999999999987643221000113345555
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhh
Q 000050 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1666 L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~ 1745 (2622)
++.+.....|. -..|++++++++..+|.-++.+.-.+... ..+..++..++.+
T Consensus 341 V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 341 VQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEF 393 (866)
T ss_pred hcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHH
Confidence 55554333332 23677888999999999999888777653 3456677888888
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhc
Q 000050 1746 LADENESVRDAALGAGHVLVEHYATT 1771 (2622)
Q Consensus 1746 L~d~~~~VR~~al~al~~lv~~~~~~ 1771 (2622)
|...+++.+.....-+..+.+.|+++
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 88778888887777777777777654
No 63
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=0.022 Score=78.99 Aligned_cols=298 Identities=17% Similarity=0.163 Sum_probs=166.4
Q ss_pred HHHHHHHHhhcChhhhh-hhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHH
Q 000050 2250 ALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRT 2328 (2622)
Q Consensus 2250 a~~L~~l~~~~~~~~l~-p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~ 2328 (2622)
..+|...++..+ .-+- .|+..+-|.|..........++-..++..+...+......-..|+..|-+.+.+.+--.+-.
T Consensus 1058 lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a 1136 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMA 1136 (1692)
T ss_pred HHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchH
Confidence 455566665554 3333 55555544443332222233444555555555444444444457778888888877766777
Q ss_pred HHHHHHHHHHHHHhc--cc--ChhhHHHHHH---HhhhcC---C--H---hHHHHHHHHHHHHHhhc--------CCC--
Q 000050 2329 VRSSAALALGKLSAL--ST--RVDPLVGDLL---SSLQVS---D--A---GIREAILTALKGVLKHA--------GKS-- 2383 (2622)
Q Consensus 2329 vR~~Aa~aLg~L~~~--~~--~~~~ll~~Ll---~~l~~~---d--~---~vr~~~l~AL~~vi~~~--------g~~-- 2383 (2622)
.-..|..|+|.++.- ++ .+...+.... +.++.+ + . ..-...+-.++-++... |..
T Consensus 1137 ~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 777888999998652 11 1222233222 222222 1 0 11122233444444421 111
Q ss_pred -CChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchH----HHHHHHHHHhhcCCCCchhhHhHHHHHHHHHh
Q 000050 2384 -VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ----LADLLQELLNLASSPSWAARHGSVLVFATFLR 2458 (2622)
Q Consensus 2384 -~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~----~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~ 2458 (2622)
..+...+.++.+|.-...+.+..+|..|...+|.+|...|.-- +..++.++++...++. ..+.-+...+...+.
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQNLELYLL 1295 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHH
Confidence 1235567788888878888889999999999999998776432 2233333332111111 001111111111110
Q ss_pred --------------------------hCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCC
Q 000050 2459 --------------------------HNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP 2508 (2622)
Q Consensus 2459 --------------------------~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~ 2508 (2622)
........ .......++.+.+.+-+.+..+|..|+..+.-++..+.
T Consensus 1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL---- 1371 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL---- 1371 (1692)
T ss_pred HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC----
Confidence 00000001 12344455666777888899999999998886665543
Q ss_pred CCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHh
Q 000050 2509 ANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 2556 (2622)
Q Consensus 2509 ~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~ 2556 (2622)
..+...++-++..-.|.....|..|...+.-+-++.+..|...+.
T Consensus 1372 ---VhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~ 1416 (1692)
T KOG1020|consen 1372 ---VHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLS 1416 (1692)
T ss_pred ---CCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 234567888888878889999999999999998888776654443
No 64
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=7.9e-06 Score=94.69 Aligned_cols=342 Identities=14% Similarity=0.089 Sum_probs=216.4
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh-H
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I 1535 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i 1535 (2622)
....+++-.+.+.+.....++...+|.++-... +.+...+..+=+.+.+++.| +.+||..++.|+.+++..-.++. +
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhh
Confidence 345556666778888889999999998886433 33444556666667777777 77899999999999987644431 1
Q ss_pred --HhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCC-hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCC
Q 000050 1536 --ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2622)
Q Consensus 1536 --~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~-~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 1611 (2622)
..-+..+.+.-+..+..++ .+...+...+....-. .-..+--+|++...+...+..+|..++..+++++---...+
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 1223334443333333443 5666655422111100 01123357888999999999999999999999874222223
Q ss_pred cccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 000050 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2622)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-----~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~ 1686 (2622)
.+..--|.++|.|..++.++++.++..|..+++.++... +|. ..-+|.+++.++++..+ .-.....|+-.+.
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnis 320 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNIS 320 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcc
Confidence 455555779999999999999999999999999998632 232 23467888888766533 3333444454443
Q ss_pred HHhchhHH---HhHhHHHHHhccCC-ChhhHHHHHHHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHH
Q 000050 1687 AALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAG 1761 (2622)
Q Consensus 1687 ~~~g~~~l---~~llp~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al 1761 (2622)
-.-+.+.+ ..++..++..+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++
T Consensus 321 ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 321 IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 33233221 33455566666544 4557888888888888754433333332 3678888888888888887665555
Q ss_pred HHHHHHhh-hch-hh-hhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1762 HVLVEHYA-TTS-LP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1762 ~~lv~~~~-~~~-i~-~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
..+.-+-. ..+ .+ -++|.+.....+++..+|-.+...++.+.
T Consensus 401 a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 401 AQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 54432111 111 11 26677777778888888888777777763
No 65
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.52 E-value=0.016 Score=76.50 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=123.2
Q ss_pred hhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---
Q 000050 2347 VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME--- 2423 (2622)
Q Consensus 2347 ~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~--- 2423 (2622)
+..++|.+++.+.+.+...|...+.+|..|+.+.+....-+..+.++++|.+.++-+|..+|.....++..+....+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 44678888999887778899999999999999888766668889999999999999999999999999887765543
Q ss_pred chHHHHHHHHHHhhcCCCC---chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHH
Q 000050 2424 DGQLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~---~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l 2499 (2622)
++++..+++.++....+++ ...|..+..+++++...-|...+ .++.+.++..|.+.+.|++.-+|+-|+.+-+..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 3457778888877555555 34677777788888876776654 357899999999999999999999999987764
No 66
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.48 E-value=0.019 Score=75.74 Aligned_cols=704 Identities=13% Similarity=0.098 Sum_probs=344.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhc-CChHHHHHHHHHHHHHHHHhchhHH----------
Q 000050 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYF---------- 1694 (2622)
Q Consensus 1626 ~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l---------- 1694 (2622)
....++++.+|..|-..+..+... +.+-..|.+...+. .+-..|+.++.-+-+.+...+....
T Consensus 11 ~~~ls~d~~vr~~AE~~l~qle~~------~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 11 SGSLSADQNVRSQAETQLKQLELT------EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred HhhcCCChhHHHHHHHHHhccccc------hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 344578899999998887765432 23444555555443 3456788887777777665443211
Q ss_pred ---H-hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1695 ---E-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1695 ---~-~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
. -+...+...+-+++..+|.++..+...++..--+ .-.++++|.+++++++.+++--.+|++++..+....-.
T Consensus 85 e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P---d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP---DEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc---hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHH
Confidence 1 1223444555577888999999888888875432 34688999999999987777667888888877665432
Q ss_pred chh----hhhHHHHhhcc---CCCchHHHHHHH--HHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhh
Q 000050 1771 TSL----PLLLPAVEDGI---FNDNWRIRQSSV--ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2622)
Q Consensus 1771 ~~i----~~llp~l~~~l---~d~~~rvR~~a~--~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~ 1841 (2622)
+.. ...+|.+.... ...+.+.|..++ .++...+.-+... . +. .++..+.+....-..+
T Consensus 162 ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~---------~---e~-~~~~~~~~~s~~l~~~ 228 (1005)
T KOG2274|consen 162 EEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNV---------E---EV-WAEHVKVFLSQILNQF 228 (1005)
T ss_pred HHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHH---------H---HH-HHHHHHHHHHHHHHHH
Confidence 211 22333333221 222333444444 2222222111100 0 00 0011111111111001
Q ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HH--HHHh
Q 000050 1842 RNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALG-EL--VRKL 1916 (2622)
Q Consensus 1842 ~~~il~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L~-~l--v~~~ 1916 (2622)
. +++... ..++|. .+..|..-+.++..++.+.|....+++...++.....+... ..-+|.....+=. .- ...-
T Consensus 229 ~-~~l~h~-l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd 306 (1005)
T KOG2274|consen 229 M-DILEHP-LQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSD 306 (1005)
T ss_pred H-HHHhhh-hcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCc
Confidence 0 111111 123333 45678888888888888888766555555444333222100 0000000000000 00 0000
Q ss_pred ccc-----hhhhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCc--HHHHHH
Q 000050 1917 GER-----VLPSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI--LEVRES 1984 (2622)
Q Consensus 1917 ~~~-----~l~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d--~~VR~~ 1984 (2622)
|+. ..-+++..+...+. ..-........+.+. +....+.+++.-+... ......|.+ ..+|..
T Consensus 307 ~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w~sD----~~~fV~dEd~~~~~~~~ 381 (1005)
T KOG2274|consen 307 PEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVWTSD----VNQFVADEDDGYTARIS 381 (1005)
T ss_pred hhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHHhcc----HHHhhccCCCCchhhhh
Confidence 000 00011111110000 000000000000000 0000111111111111 011112222 234444
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHh
Q 000050 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2622)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~ 2064 (2622)
....+-.+...+|...+..+....-..++.............-. ++.....+..+.. .
T Consensus 382 ~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk--------------------~qea~l~a~~~~~--~ 439 (1005)
T KOG2274|consen 382 VRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWK--------------------IQEALLVAAESVR--I 439 (1005)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHH--------------------HHHHHHHHHhhcc--c
Confidence 44444444444554333333222111111000000000000000 0000000111111 2
Q ss_pred CCChhhhHhhhHHHHHHhcC-CCCHHHHHHHHHHHHHhhhc--cChhcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHH
Q 000050 2065 GPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~l~-~~~~~vr~~a~~al~~l~~~--~~~~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~ 2140 (2622)
+.....++..++..+...+. .+.+.+-..+.+++..+..+ +...-...++...+..+ .+..+.+|..|+.++..+|
T Consensus 440 ~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 440 DDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred CcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc
Confidence 33344555555555556553 34455555777787777665 33444566666665555 4666889999999998888
Q ss_pred hhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccc--hhhHHHHHHHHHhhchhhhhhhhcCCcccc
Q 000050 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV--QPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2622)
Q Consensus 2141 ~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~--l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2622)
.+.-+.+..|.++..|+.+..+...+|.....++|+.+++..++.. +.
T Consensus 520 --~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~---------------------------- 569 (1005)
T KOG2274|consen 520 --KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME---------------------------- 569 (1005)
T ss_pred --CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh----------------------------
Confidence 3456778889999999999999999999999999999887655321 11
Q ss_pred ccCCCCcCchhhHHHHHHHHc--cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC---CCHhhHHHHH
Q 000050 2219 PGFCLPKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAIL 2293 (2622)
Q Consensus 2219 ~g~~~~~~l~~ilp~ll~~L~--~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al 2293 (2622)
+.+.|.+...+. +.++-+-..+-.++.+++... ....|+....++.++.+++-. .+......++
T Consensus 570 ---------skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ai 638 (1005)
T KOG2274|consen 570 ---------SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAI 638 (1005)
T ss_pred ---------cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHcCcccccCchhhHHHH
Confidence 112333322221 123444445556666666532 456777777888888888643 2356777899
Q ss_pred HHHHHHHHhcCCCccC-chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhc----------ccChh-hHHHHHHHhhhc
Q 000050 2294 STLSIIIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRVD-PLVGDLLSSLQV 2360 (2622)
Q Consensus 2294 ~~L~~L~~~~~~~l~p-~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~----------~~~~~-~ll~~Ll~~l~~ 2360 (2622)
..|..+++..+..+.. +..+..+.+.++.-++ +-.+=..+-.||..++.. .|+.. .++-..+..+-+
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 9999999988765433 3345677888876554 566777888999888542 12222 244444445433
Q ss_pred CC--HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhc
Q 000050 2361 SD--AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2361 ~d--~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
++ ......+-.-+..++.++|..++ +..++|+..+..-+. .....+-..-...+.+|....
T Consensus 719 p~~sds~a~~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 719 PETSDSAAAFVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred CccchhHHHHHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCC
Confidence 32 22222344445566777777664 344555544433332 234444444444555555433
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.46 E-value=1.2e-05 Score=106.44 Aligned_cols=295 Identities=18% Similarity=0.204 Sum_probs=204.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
+++.+..+++.-+..+.|.+|+..+..++....+ +..+..++|.++.++.|+...||-.|..++-.+.....+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~---- 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI---- 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC----
Confidence 5566666666655667788899988888876653 5567889999999999999999999988876664432211
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
.|....-.-.-++|.|-.++.| ....||-+-+.+|..+++..- .+..
T Consensus 497 ------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 497 ------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred ------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 0111111123467888888999 677899999999999987542 1222
Q ss_pred HHHHHHhh--cCCCChhHH------HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 000050 1538 LVPTLLMG--LTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2622)
Q Consensus 1538 ilp~Ll~~--l~d~~~~~r------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 1609 (2622)
+...+-.. +++|+..+. .-+++| ...+-..+...+.|.++-||+...+.+..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 22222222 455544211 011111 122333445567788889999999999999988876
Q ss_pred CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1610 ~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
.+. -+-+++.|...|+|.+|.+|.+-+..|.-++-.+|... -+-++|.|.+.|.+.++. +...+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHh
Confidence 432 23488889999999999999999998888888788763 345678888888766544 566777788777763
Q ss_pred h--chhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1689 L--GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1689 ~--g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
- .+..+-+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 2 2234466666777778899999999999999999888774
No 68
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.45 E-value=0.023 Score=75.21 Aligned_cols=193 Identities=22% Similarity=0.254 Sum_probs=141.6
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc-------------ccccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000050 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-------------l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL 2177 (2622)
.++-..++..+++ +.+--.++.++..+....+.. -..++.++++.+...+......++.+-..+|
T Consensus 814 ~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 814 SEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred chHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHH
Confidence 3455556666655 233344555555443322111 0234567777887777756666777777888
Q ss_pred HHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHH
Q 000050 2178 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 2257 (2622)
Q Consensus 2178 ~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~ 2257 (2622)
+.++++.|++.+ + +.+..++|.++++|.-++.++|-....++..+.
T Consensus 892 shVl~~vP~~vl----------------------------l------p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 892 SHVLTNVPKQVL----------------------------L------PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHHhcCCHHhh----------------------------c------cchhhHHHHHHHhcCCCccchhhhHhhhhhHHH
Confidence 888777665321 1 234568999999999999999999999999999
Q ss_pred hhcChhhhhhhhhhhhHHHHHhhcCCC--CHhhHHHHHHHHHHHHHhcC-CCccCchHHHHHHHHHHhCCCCHHHHHHHH
Q 000050 2258 EVTSEQSLKEFVIPITGPLIRIIGDRF--PWQVKSAILSTLSIIIRKGG-IALKPFLPQLQTTFIKCLQDSTRTVRSSAA 2334 (2622)
Q Consensus 2258 ~~~~~~~l~p~v~~i~~~Li~~l~~~~--~~~vk~~al~~L~~L~~~~~-~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa 2334 (2622)
...+ .-...|++.+++.++.+-.+.. ...||..|+.+|+.|.+..| ..+.||-|++++.+.++|.|+.+-||..|+
T Consensus 938 ~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 938 TESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred Hhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 8776 6678889999888887765543 25799999999999999665 467899999999999999999999999999
Q ss_pred HHHHHH
Q 000050 2335 LALGKL 2340 (2622)
Q Consensus 2335 ~aLg~L 2340 (2622)
.+=+..
T Consensus 1017 ~tR~~W 1022 (1030)
T KOG1967|consen 1017 DTRQNW 1022 (1030)
T ss_pred HHhhhh
Confidence 887765
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.45 E-value=0.0019 Score=79.61 Aligned_cols=288 Identities=14% Similarity=0.047 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2622)
Q Consensus 1841 ~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~ 1919 (2622)
.+....+.|-..++|.-..|.-.+...+.++.... +. +.+...+..+-.+|.++....|..|.+.|.++....+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 34444444545567766777777777777776533 22 456667777788888999999999999999999876654
Q ss_pred hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
+. ..-+-+...+.|.+ |.-+.+++..+++....+.+ +.++..+...+.|-....+..+..++.++.-.+..
T Consensus 338 v~-vcN~evEsLIsd~N---r~IstyAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~- 408 (898)
T COG5240 338 VS-VCNKEVESLISDEN---RTISTYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS- 408 (898)
T ss_pred ee-ecChhHHHHhhccc---ccchHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-
Confidence 21 11222334444444 44456777777765444443 34444444444444444455556666666544433
Q ss_pred hhhhhHHHHHHhcccCCc---hhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhH
Q 000050 2000 AIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~---~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il 2076 (2622)
....++..|.+.|.++.. ...+.+++..++.. ......+||..|.
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~-----------------~p~skEraLe~LC--------------- 456 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN-----------------DPDSKERALEVLC--------------- 456 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh-----------------CchHHHHHHHHHH---------------
Confidence 345566777776655432 13455555555421 0011233333333
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2077 PALLSAMGDDD-MDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2077 ~~Ll~~l~~~~-~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
..+.|.. +++ +...++.+....+. ..-...+..+..++-=++..+|.+|..+|..|+-+....+.+ ..+
T Consensus 457 ----~fIEDcey~~I---~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv 527 (898)
T COG5240 457 ----TFIEDCEYHQI---TVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSV 527 (898)
T ss_pred ----HHHhhcchhHH---HHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHH
Confidence 3333322 222 23333333332211 111223333444444467899999999999997654433333 456
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
...|-++++|.|.+||+.|..++..+-
T Consensus 528 ~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 528 ENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 667778899999999999998888764
No 70
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0013 Score=79.65 Aligned_cols=514 Identities=14% Similarity=0.112 Sum_probs=263.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhhch----hhhhHHH---------HhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000050 1750 NESVRDAALGAGHVLVEHYATTS----LPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~~----i~~llp~---------l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2622)
...||..|+.++....+.++.+. ...++|. +.-++.|.+.|.|.-+++....+++.. |..+.
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls 83 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLS 83 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHH
Confidence 34688889888888777665442 2223332 234578999999999999999988631 11100
Q ss_pred CCC--CCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh-HH-HHHHHHHHHHHH
Q 000050 1817 GGS--DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LK-EIMPVLMNTLIS 1892 (2622)
Q Consensus 1817 ~~~--dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~-l~-~~l~~ll~~L~~ 1892 (2622)
..+ .|..+..-. -.+...+- ...+++-.. .-.+....+-...++++..++.++|-. ++ .++-.++..+.+
T Consensus 84 ~a~~~~~~~ftpf~--v~~a~si~--~~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~ 157 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFS--VMIACSIR--ELHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKP 157 (728)
T ss_pred HHhccCCcCCCchH--HHHHHHHH--HHHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 000 011111000 01110000 001111111 123445667788899999999998833 22 356677788888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhcc----------c------hhh-----hHHHHH------h----------------
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLGE----------R------VLP-----SIIPIL------S---------------- 1929 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~~----------~------~l~-----~llp~L------~---------------- 1929 (2622)
.+.+.++.+|..+...++.++..... . .++ +-...+ .
T Consensus 158 ~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 237 (728)
T KOG4535|consen 158 YIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWL 237 (728)
T ss_pred HhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcce
Confidence 88999999999999999988753210 0 000 000000 0
Q ss_pred ----------------------hhcCC--CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHH
Q 000050 1930 ----------------------RGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985 (2622)
Q Consensus 1930 ----------------------~~L~d--~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A 1985 (2622)
.++.. .-..+|..+.+.|..+....+ ....|..++...+...+.+.++.+...+
T Consensus 238 i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~ 315 (728)
T KOG4535|consen 238 IRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHG 315 (728)
T ss_pred eeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHH
Confidence 00000 011345555555554433332 2344667777777788889999999999
Q ss_pred HHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhC
Q 000050 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG 2065 (2622)
Q Consensus 1986 ~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g 2065 (2622)
+.++..+....+.+ ..| +...+..--..+..++..+ -.+.....-..+........++.++....-
T Consensus 316 a~ll~~lg~~lv~~----~~P-------~~~k~~~q~~~fw~~~l~~---p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQ----YKP-------DSTKAPDQRAPFWTMMLNG---PLPRALYDSEHPTLQASACDALSSILPEAF 381 (728)
T ss_pred HHHHHHHHHHHhhh----cCC-------CcccchhhhccHHHHHccC---CChhhhhhhcCCCchhHHHHHHhhcCchhh
Confidence 99988876544421 111 0000000000122222110 011111000001111122334444433222
Q ss_pred CChhhhHhhhHHHHHHhcCCC-CHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000050 2066 PGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~l~~~-~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~ 2140 (2622)
..|..--.+..+.+.....|. +.-++.++..++...+..-+- ..+......++..+.|..-.+|..+++.+|.+.
T Consensus 382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH
Confidence 223332335566666666543 344666776666554443221 224455566666677777889999999999885
Q ss_pred hhc----cc---cccccHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhh
Q 000050 2141 KNS----KL---YLVDEAPNMISTLIVLLS--D-SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRK 2210 (2622)
Q Consensus 2141 ~~~----~~---~l~~~~~~il~~L~~~l~--d-~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~ 2210 (2622)
... +. .-.......+..++..-. + ....|+.++.++|+++...... +.+.....+ .+...
T Consensus 462 dAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~-----i~~~~~~e~---~~~~~-- 531 (728)
T KOG4535|consen 462 DALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP-----IEKPTFAEI---IEESI-- 531 (728)
T ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH-----hhhccHHHH---HHHHH--
Confidence 432 21 112233444555544432 2 2357999999999998654321 111100000 00000
Q ss_pred hcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHHHhhcCCCCHhhH
Q 000050 2211 KKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2622)
Q Consensus 2211 ~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~-~~l~p~v~~i~~~Li~~l~~~~~~~vk 2289 (2622)
.+++. .....+...+|-+++.++|.+.++-.- -.-.++.+.+++.|...+.+..+..||
T Consensus 532 ~~l~~--------------------~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 532 QALIS--------------------TVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred Hhccc--------------------ceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 00000 001123457899999999999976320 112466677777777777776677788
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh
Q 000050 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2622)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L 2322 (2622)
..|..+|..-.... .....++-.++.++..|
T Consensus 592 i~AA~aL~vp~~re--~~~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 592 IRAAAALSVPGKRE--QYGDQYALSWNALVTAL 622 (728)
T ss_pred ehhhhhhcCCCCcc--cchhHHhHHHHHHHHHH
Confidence 77777776443322 22333444455444443
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.41 E-value=1.5e-06 Score=86.49 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
.|.+++.++..++.++|..+.+|+..++|.++.++.|++..||..|++++-.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni--------------------------- 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNI--------------------------- 54 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------------------------
Confidence 68899999999999999889999999999999999999888887766555544
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
+......+..+++++++.+.+++.|+++.||.+|. .|.++
T Consensus 55 -----------~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 55 -----------SKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 44344455567899999999999999999998884 44444
No 72
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=0.0088 Score=76.75 Aligned_cols=256 Identities=19% Similarity=0.292 Sum_probs=135.7
Q ss_pred hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh----------hhhhhhHHHHh--hhhcCCCHHHHHHHHHH
Q 000050 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----------QCLPKIVPKLT--EVLTDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~----------~~L~~ivp~L~--~~L~D~~~~VR~aA~~a 1522 (2622)
.+...+...++.-.+.+|..-..|+..+..++++.+.... ..+..+++.+. +++.++|+.|+-.-.+.
T Consensus 437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ 516 (980)
T KOG2021|consen 437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL 516 (980)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 3455555555556678899999999999999987543211 12223444333 35567788877666666
Q ss_pred HHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000050 1523 LQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2622)
Q Consensus 1523 L~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~ 1602 (2622)
+.+..+.+.. -...+|.++.+.-|+ +|+...+.+||..|.-....
T Consensus 517 ivRY~kff~~--esq~ip~vL~aFld~---------------------------------rglhn~ne~Vr~RawYLF~R 561 (980)
T KOG2021|consen 517 IVRYNKFFST--ESQKIPLVLNAFLDS---------------------------------RGLHNKNENVRLRAWYLFTR 561 (980)
T ss_pred HHHHHHHHhc--chhhhHHHHHHHccc---------------------------------hhccccccccchHHHHHHHH
Confidence 6554443321 112344444433322 34455566677777666666
Q ss_pred hhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHH------------HHHHHHHHHHHhhhC--CC----CchhhH-----
Q 000050 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR------------SVAARAIGSLIRGMG--EE----NFPDLV----- 1659 (2622)
Q Consensus 1603 l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR------------~~a~~aL~~L~~~~g--~~----~~~~ll----- 1659 (2622)
+.+.+. +.+.||.+.++..+..+|..+.+..- --..+++|-++..-. .+ +...++
T Consensus 562 fVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~ 639 (980)
T KOG2021|consen 562 FVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLIL 639 (980)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHH
Confidence 665542 35666777777777666632222111 111222222221100 00 111111
Q ss_pred ----HHHHHHhhhcCCh----HHHHHHHHHHHHHHHHhch-----------hHHHhHhHHHHHhcc--CCChhhHHHHHH
Q 000050 1660 ----SWLLDALKSDNSN----VERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2622)
Q Consensus 1660 ----~~Ll~~L~~~~~~----~~r~~a~~~L~~i~~~~g~-----------~~l~~llp~l~~~l~--~~~~~vR~~al~ 1718 (2622)
..+...+.++... ..-...+.+++...+++.. ..+...+..++..+. .....+|.+.-.
T Consensus 640 ~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrf 719 (980)
T KOG2021|consen 640 DQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRF 719 (980)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 1111222222221 2334556666666655421 134444444433333 245667777778
Q ss_pred HHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
.++++..++|+..-||+++.+..+++...
T Consensus 720 t~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 720 TFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 88888888888888888888888887654
No 73
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.35 E-value=0.053 Score=81.41 Aligned_cols=267 Identities=21% Similarity=0.298 Sum_probs=163.0
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh---------hcHHHHHHHHHhh-cCCCChhHHHHHHHHH
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKG-VGDNQASIRRSSAYLI 2136 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll~~-l~d~~~~vR~~A~~~L 2136 (2622)
+...++..+++.. +...+.++|..+..++..++..... +.+..++..+... +.+.++.+|......+
T Consensus 477 ~~~~~~~~~~~~~---~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l 553 (2341)
T KOG0891|consen 477 SLTLFVQQCVDSY---LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSL 553 (2341)
T ss_pred hHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhh
Confidence 3344444444333 3456677887776655555443211 1134444444443 3567788887766665
Q ss_pred HHHHhhcccccccc--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhh-hhhhcC
Q 000050 2137 GYFYKNSKLYLVDE--APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE-RRKKKG 2213 (2622)
Q Consensus 2137 ~~l~~~~~~~l~~~--~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~-~~~~~~ 2213 (2622)
. .++.++ -+..+..++..+.|..-..+.++...+++++...++..++.+............-.. .+....
T Consensus 554 ~-------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~ 626 (2341)
T KOG0891|consen 554 N-------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEE 626 (2341)
T ss_pred c-------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHH
Confidence 5 111111 256777788888888888899988888888776665555555544433322221100 000000
Q ss_pred Cc----ccc---ccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCH
Q 000050 2214 GP----ILI---PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2622)
Q Consensus 2214 ~~----~~l---~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~ 2286 (2622)
.. ..+ +.+. -.++.+++-.+...+.+++..+-..+..+++.++...| ..++.++.....-+...+++....
T Consensus 627 ~a~~~~~~i~~~~~~i-~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~~~~~~~~~~~~l~~~s~~ 704 (2341)
T KOG0891|consen 627 SAKLLCELIISSPVLI-SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKWVDELFSLIIKMLQDQSSL 704 (2341)
T ss_pred HHHHhhHHHHHHHHHH-HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhccchHHHHHHHHHHHhhhh
Confidence 00 000 0000 01223344444445555666666788899999998888 667777766666667777776677
Q ss_pred hhHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhccc
Q 000050 2287 QVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~l--~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
..|.+++.+++.+....+..+.|+. |.+...+..-+... ...+|..+...+|.+...++
T Consensus 705 ~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 705 GKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred hchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 7899999999999998888788875 77888887776665 78999999999996655443
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.35 E-value=0.00063 Score=89.11 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=165.9
Q ss_pred hHhhhHHHHHHhc-CCCCHHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhccccc
Q 000050 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2622)
Q Consensus 2071 ~l~~il~~Ll~~l-~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~~~~~~~l 2147 (2622)
....++..++... ..+++..|..+..++..++..+.. +.+..++..+.... ...+...|..+...+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5555777777765 455588899999999988887643 45778888777777 45566777777777766665433334
Q ss_pred cccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2148 ~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
.+...+++..|+.++++ +++...+..+++.++...+. .+. .... ..+.-+...+-.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~-----------~~~~----------a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLN-----------KENH----------ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcC-----------cccc----------chhhhHHhHHHH
Confidence 56677889999999987 56777888888887764221 110 0000 001111112445
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2622)
..++|.++++....+.+.|.....+++.+.++++.+.+.++++.+.+-|++.|.-. +.+++.+++.+|..++...+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 66899999999988888999999999999999998899999999999999999654 77899999999999999888778
Q ss_pred cCchHHHHHHHHH
Q 000050 2308 KPFLPQLQTTFIK 2320 (2622)
Q Consensus 2308 ~p~l~~L~~~llk 2320 (2622)
.+|+..|++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877777665
No 75
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.32 E-value=1.6e-05 Score=107.20 Aligned_cols=339 Identities=17% Similarity=0.216 Sum_probs=217.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhH
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~l 1697 (2622)
.+..+...+.-..+..-..++.++-.++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666666778888888888777541 122221 112222 234677777777777776665421111
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC-hHHHH--HHHHHHHHH--------HH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRD--AALGAGHVL--------VE 1766 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~-~~VR~--~al~al~~l--------v~ 1766 (2622)
.+......++.+..+.|.....+...--+.......++. +++.+ .....+... ..
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 133334444444444443222221111122222222111 11000 000000000 00
Q ss_pred ---Hh-hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhH
Q 000050 1767 ---HY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2622)
Q Consensus 1767 ---~~-~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~ 1842 (2622)
.. ..+..+.+-|.+...+.+++|+-|..+++.+...+..-. . +-... +.
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~---------~~~~~-----------------~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-K---------EIVKG-----------------YT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-c---------ccccC-----------------cc
Confidence 00 112345577888899999999999999998888775421 0 00000 11
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh
Q 000050 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2622)
Q Consensus 1843 ~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~ 1922 (2622)
+.+...+-....|.|..|-..|+.++..++...+..+.+|....++.++.++.+.....|.....++..++.. ..+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHH
Confidence 1122223334689999999999999999999999889999999999999999999999999999999888763 3467
Q ss_pred hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
.+.+.+..++.+.+|..|..+..++...+...++. ....-+.+++|.+..+.+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 78888889999999999999999999888877742 23445688999999999999999999999999999999998666
Q ss_pred hhhHH
Q 000050 2002 DEIVP 2006 (2622)
Q Consensus 2002 ~~ilp 2006 (2622)
..++.
T Consensus 451 ~k~L~ 455 (815)
T KOG1820|consen 451 KKLLK 455 (815)
T ss_pred HHHHH
Confidence 55543
No 76
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.32 E-value=0.041 Score=72.20 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=98.7
Q ss_pred CCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhhc
Q 000050 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~~ 2360 (2622)
.+++-+|..+.-+|+.++-.-+.-.+. +++.|++-|.-. .-.+|+...-++|.++ .+...+|.|+|.+-..+++
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~LaKr----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLAKR----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 357778999999999988765544443 455666666654 6789999999999994 4556789999999999999
Q ss_pred CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
+++-||...+--|..+++..= -.+...++=-..-.+-|.++++|+-+--|+|.+...-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~----vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGI----VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhh----hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999999988988886421 122333332222334478899999999999998766443
No 77
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.0012 Score=79.88 Aligned_cols=511 Identities=16% Similarity=0.174 Sum_probs=274.7
Q ss_pred CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------
Q 000050 1857 SLSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL---------- 1916 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~---------~L~~~L~s~~~~~R~~A~~~L~~lv~~~---------- 1916 (2622)
...||..|+.++..+....|+ .+.-|+..++| .+.-.++|+++..|..|.+.+..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 357899999988888776653 33344444433 1222367899999999999999887543
Q ss_pred ccc-hhh----------hHHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhHH-HhHHhHHHHHHHHhcCCcHHHHH
Q 000050 1917 GER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALCDSILEVRE 1983 (2622)
Q Consensus 1917 ~~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l~-~~l~~ll~~l~~~L~d~d~~VR~ 1983 (2622)
|+. +.| ++...+...+. +..+.+-..++.+|+.++...+-..++ .++-.++..+.+.+...|+.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 221 112 11222222232 345666667788888887766555443 46677888888899999999999
Q ss_pred HHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc-------hhHHHHHHHHHHhhh--------ccc-------cccchh
Q 000050 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT-------SDTALDGLKQILSVR--------TTA-------VLPHIL 2041 (2622)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~-------~~~aL~~L~~il~~~--------~~~-------ilp~Li 2041 (2622)
.+...++.+..... ..|.+-..+..... -...-+..++++... ++. ++...+
T Consensus 169 s~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred HHHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 98888887754322 12222222211100 001112222222110 000 000000
Q ss_pred hhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh--hcHHHHHHHHHh
Q 000050 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESLVSELLK 2119 (2622)
Q Consensus 2042 p~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~l~~ll~~Ll~ 2119 (2622)
.....++-..+ .+.....++|. +. ....+|-.+...+..+...++- .++-.+...+..
T Consensus 243 ~i~~~~~~~s~---~~~~~~~~~~~----------------~~-~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~ 302 (728)
T KOG4535|consen 243 SIVVLPKEDSC---SGSDAGSAAGS----------------TY-EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICK 302 (728)
T ss_pred eeeecCCcccc---chhhHHhhhcC----------------cc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000110000 00111111111 11 1123566666666666555542 345667777888
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch----hhHHHH
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ----PSYIKV 2195 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l----~~lv~~ 2195 (2622)
.+.+.++.+...+..++..+.......+.|. ....++..+.+.+..-. +..+...+ +.+...
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~~fw~~~l~-~p~~~~~YDs~~~Tl~~s 368 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRAPFWTMMLN-GPLPRALYDSEHPTLQAS 368 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhccHHHHHcc-CCChhhhhhhcCCCchhH
Confidence 8888888888888888877765433222211 11122222222111110 11111111 111111
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~ 2274 (2622)
....+... + ..+-..+|.+-....++|+.|..+. +.-+|..|..+++.++-+-+......++..-..
T Consensus 369 ~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~ 436 (728)
T KOG4535|consen 369 ACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAAN 436 (728)
T ss_pred HHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHH
Confidence 12222111 1 1233345667777889998888743 334667777888877766554445556655556
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc---cCchH----HHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHhc-
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFLP----QLQTTFIKC--LQDS-TRTVRSSAALALGKLSAL- 2343 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l~----~L~~~llk~--L~d~-~~~vR~~Aa~aLg~L~~~- 2343 (2622)
...+.+++. .-.+|.-+..++|.|-...-..+ +.+.. .++...+.. ..+. +..||.+|..+||++..+
T Consensus 437 ~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 437 AILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 666777764 55678888888887765432211 11222 222222221 2333 679999999999998543
Q ss_pred ccChhhHHHHHHHhhhc---------CCHhHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHhhcC-CCHHHHHHHH
Q 000050 2344 STRVDPLVGDLLSSLQV---------SDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVSAA 2412 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l~~---------~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~aa 2412 (2622)
++-...-+.++++.-.. ....||-.++.++.+++.+-.-.+ +.+..+.+++.|..++.+ .+-.+|..||
T Consensus 516 q~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA 595 (728)
T KOG4535|consen 516 QPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAA 595 (728)
T ss_pred HHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhh
Confidence 33333333344433211 136799999999999997644322 235677888888877765 5778999988
Q ss_pred HHHHHHHh
Q 000050 2413 SILGIMSQ 2420 (2622)
Q Consensus 2413 ~~Lg~L~~ 2420 (2622)
.+|..-..
T Consensus 596 ~aL~vp~~ 603 (728)
T KOG4535|consen 596 AALSVPGK 603 (728)
T ss_pred hhhcCCCC
Confidence 87765444
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.011 Score=73.39 Aligned_cols=291 Identities=15% Similarity=0.162 Sum_probs=168.2
Q ss_pred hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000050 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1572 ~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g 1651 (2622)
..+.++.|.|...+.++-.-+...++..+..++..- .-..++++.+..|...|..+....|-.|.+.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 455678899999998876677777777776665431 1123677888899999999999999999999999988765
Q ss_pred CCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1652 ~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
+.. .-.-+.+ +.|-++. .|.-+..++..+++.-..+..+.++..+.....+-++..+..++.++..++..++..-
T Consensus 336 ~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 336 QKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred cee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 441 1111111 2222332 3555666777777765556666666666666666666667777777888887777655
Q ss_pred hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000050 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~ 1811 (2622)
..|+.-+...+++ ...-+.+..+.+++..+++..++. |.-+++.+.+++
T Consensus 411 ~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s--------------------kEraLe~LC~fI-------- 459 (898)
T COG5240 411 LSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS--------------------KERALEVLCTFI-------- 459 (898)
T ss_pred HHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH--------------------HHHHHHHHHHHH--------
Confidence 5554444443333 222234555555555555443221 112222222222
Q ss_pred cccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHH
Q 000050 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNT 1889 (2622)
Q Consensus 1812 ~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l--~~~l~~ll~~ 1889 (2622)
.|. +--+.++.+|+-+....|+.- ..|+..+...
T Consensus 460 ------------------------------------------EDc--ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR 495 (898)
T COG5240 460 ------------------------------------------EDC--EYHQITVRILGILGREGPRAKTPGKYVRHIYNR 495 (898)
T ss_pred ------------------------------------------hhc--chhHHHHHHHHHhcccCCCCCCcchHHHHHHHH
Confidence 111 011223333333333333211 1223333222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh-hHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1890 LISSLASSSSERRQVAGRALGELVRKLGERVLP-SIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1890 L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~-~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
+ -=.+..+|..|..||..+.-...+.+.+ .+...+.++++|.|.++|-.|...+..+
T Consensus 496 ~----iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 496 L----ILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred H----HHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 2 2235668888888888776555555443 4555677788888888988887776654
No 79
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0016 Score=84.95 Aligned_cols=430 Identities=17% Similarity=0.166 Sum_probs=247.6
Q ss_pred HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+..+..++|.++...+..+-..|+-.-.-+...+..-|..-. ..++.+++-..|+++.+|..|.+.++.+.-.
T Consensus 44 G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--- 116 (734)
T KOG1061|consen 44 GKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI----LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--- 116 (734)
T ss_pred CcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----hhhhhhhccCCCCCHHHHHHHhhceeeEeeh---
Confidence 346677888888888777777777666666666666555432 2344555667788888888888777655310
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
. ....+...+.++++|.++.+|+.+..++..+... +++.
T Consensus 117 ~---------------------------------------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~ 155 (734)
T KOG1061|consen 117 K---------------------------------------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDL 155 (734)
T ss_pred H---------------------------------------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhh
Confidence 0 1112334456677777788888888877776553 1111
Q ss_pred ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 000050 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~ 1688 (2622)
. .-..+++.|..++.|.+|.|-..|..++..+.+.-... ....++..++..+..-..+ -+.. .+......
T Consensus 156 ~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW-~qi~---IL~~l~~y 229 (734)
T KOG1061|consen 156 V--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW-GQIF---ILDCLAEY 229 (734)
T ss_pred c--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh-hHHH---HHHHHHhc
Confidence 1 12347888888889999999999999999888765432 2234444555555433322 1222 23333333
Q ss_pred hchhH--HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000050 1689 LGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2622)
Q Consensus 1689 ~g~~~--l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~ 1766 (2622)
...+. ...++..+...+.+.++.+--++...+-.+...+..--..++.++-|+++..+..+. .+.-.+++-+..++.
T Consensus 230 ~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 230 VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 33332 244555555566666766666666666666655544223455667777777776655 666666666666555
Q ss_pred HhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHH
Q 000050 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2622)
Q Consensus 1767 ~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il 1846 (2622)
..+.- ...-+..+.-.-.|.. -++..=++ .+......+..++++
T Consensus 309 ~~p~~-~~~~~~~Ff~kynDPi-YvK~eKle----------------------------------il~~la~~~nl~qvl 352 (734)
T KOG1061|consen 309 KRPEI-LKVEIKVFFCKYNDPI-YVKLEKLE----------------------------------ILIELANDANLAQVL 352 (734)
T ss_pred hChHH-HHhHhHeeeeecCCch-hhHHHHHH----------------------------------HHHHHhhHhHHHHHH
Confidence 44331 0000000000001110 01111111 122222233344566
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHH
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp 1926 (2622)
..+...-.+.+.+.-+.|+.+++.++...... ...++.++..+.-.-.-+-+.+...+.++.++.+... ..+++
T Consensus 353 ~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~ 426 (734)
T KOG1061|consen 353 AELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVA 426 (734)
T ss_pred HHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhh
Confidence 66666667777777888899999888654432 3445555555553333344456677778888776543 55666
Q ss_pred HHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHH
Q 000050 1927 ILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985 (2622)
Q Consensus 1927 ~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A 1985 (2622)
.+...+.+ .+|+.|.+..+.+|+-..... -...++..+.+...|....|+-.-
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHHhhcccchHHHHHHH
Confidence 66655554 468888888877777543332 235566666677777777776543
No 80
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.27 E-value=0.0007 Score=88.65 Aligned_cols=325 Identities=17% Similarity=0.182 Sum_probs=203.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc-----hhHHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-----EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAA 1444 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~-----~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al 1444 (2622)
.++..+...++.+.+...-.+.+..+..+.+...... .-|... ++|.++...- +. ++.+=+.+...+
T Consensus 42 ~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~ 121 (415)
T PF12460_consen 42 RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLI 121 (415)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHH
Confidence 3444444445444345566667777766666543222 334443 7777766542 11 256777788888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhcc----------CCCh--hhHHHHHHHHHHHH-hhCchhhhhhhhhhHHHHhhhhc-C
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLE----------DKAW--RTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPKLTEVLT-D 1510 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w--~~r~~a~~~L~~la-~~~p~~l~~~L~~ivp~L~~~L~-D 1510 (2622)
+.++..++......++..+...+- +..+ ......+.++..+. ...++...+...+++..+..... .
T Consensus 122 ~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~ 201 (415)
T PF12460_consen 122 NLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSS 201 (415)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcC
Confidence 888899988877666666655433 1111 12222233333333 32333222244556666666543 3
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCh-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCC
Q 000050 1511 THPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~ 1589 (2622)
.++..|..+++++..+...+.+. .++.++..+..... ....
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~--------------------------------------~~~~ 243 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS--------------------------------------SSED 243 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc--------------------------------------ccCC
Confidence 45889999999999988765433 34444444443330 0111
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC----------------C
Q 000050 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----------------E 1653 (2622)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~----------------~ 1653 (2622)
...+..+..++..+.+..-- ...|....+...+.+++.+ +++...++++++.+..-.++ .
T Consensus 244 ~~~~~~~~~~~~Wi~KaLv~--R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR 319 (415)
T PF12460_consen 244 SELRPQALEILIWITKALVM--RGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQR 319 (415)
T ss_pred cchhHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHH
Confidence 22233333333333322100 0013344566677777777 77889999999998875221 1
Q ss_pred CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH----HHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~----l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.|..++|.+++..++.... .|.....+++.+++.++... ++.++|-+++.+..+++.++.+++.++..+...-++
T Consensus 320 ~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 320 FFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 4678889998888765533 67778889999999888764 478899999999999999999999999999988888
Q ss_pred chhhhHHhHHHHHHhh
Q 000050 1730 QFQNYLQQVLPAILDG 1745 (2622)
Q Consensus 1730 ~f~p~l~~ii~~ll~~ 1745 (2622)
.+.+|+..++|.+++.
T Consensus 399 ~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 399 LISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998763
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0085 Score=76.72 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=179.0
Q ss_pred cCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
.|..|.-...+.+.++..|.++-+-+|..|...+-.+....+ ++++|.++.+ ..-|.|. +++|..+|...+++|
T Consensus 135 ~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL----~EkLeDp-Dp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 135 CIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRL----VEKLEDP-DPSVVSAAVSVICEL 208 (877)
T ss_pred cccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHH----HHhccCC-CchHHHHHHHHHHHH
Confidence 344455555677888888888899999999999999998887 7898886654 6667764 889999999999999
Q ss_pred HHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChh-hHHHHHHHhhhcCCHhHHHHHHHHHHHHH
Q 000050 2300 IRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2300 ~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~-~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi 2377 (2622)
+++.|..+-+ |-+.|.+.+.++ |..+-....+-+|.|.-+.||+. ++++.|.+.+.++. ......+++..|+
T Consensus 209 ArKnPknyL~----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~--AmSLlYECvNTVV 282 (877)
T KOG1059|consen 209 ARKNPQNYLQ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV--AMSLLYECVNTVV 282 (877)
T ss_pred HhhCCccccc----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHHhe
Confidence 9999865444 555777877775 77888888999999988888754 67888888876532 1223344444444
Q ss_pred hh---cCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHH
Q 000050 2378 KH---AGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFA 2454 (2622)
Q Consensus 2378 ~~---~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 2454 (2622)
.. .|..-..+....++.-|-..+.|+|+..+=.+.-|++.+++..|. .+...-+-++..+.+.+...|..+...|.
T Consensus 283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhHHHHHHHHH
Confidence 33 121112456677778888888899999998889999999999885 44444444566667777777876766666
Q ss_pred HHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhH
Q 000050 2455 TFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREAS 2492 (2622)
Q Consensus 2455 ~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a 2492 (2622)
.++.. .-.-+|+..|..+....+ ..+|.--
T Consensus 362 gmVsk--------kNl~eIVk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 362 GMVSK--------KNLMEIVKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHhhh--------hhHHHHHHHHHHHHHhccchhHHHHH
Confidence 65533 123467777777665543 3555543
No 82
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.22 E-value=0.069 Score=70.76 Aligned_cols=251 Identities=23% Similarity=0.187 Sum_probs=159.2
Q ss_pred ChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhc--------HHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000050 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG--------VESLVSELLKGVGDNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2067 ~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~--------l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~ 2138 (2622)
-+.+.++.|+..|+....+...++-...++++..++. ++.+. .+.++..+.+. ++||.+-..+-.++..
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEE 599 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 4677888899999988888788887778888877765 23211 23333333333 4456666666666666
Q ss_pred HHhhccccccccHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCC
Q 000050 2139 FYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 2214 (2622)
Q Consensus 2139 l~~~~~~~l~~~~~~il~~L~~~l~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~ 2214 (2622)
++.. ...+.++....++.++..++-++ ......+...|..+++..+... +
T Consensus 600 l~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL-~------------------------ 653 (1005)
T KOG2274|consen 600 LLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL-P------------------------ 653 (1005)
T ss_pred HHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc-c------------------------
Confidence 6552 24566777788888888887544 4555666677776666554431 1
Q ss_pred ccccccCCCCcCc-hhhHHHHHHH-HccCCHHHHHHHHHHHHHHHhhcChhhhhhh-h------hhhhHHHHHhhcCCCC
Q 000050 2215 PILIPGFCLPKAL-QPLLPIFLQG-LISGSAELREQAALGLGELIEVTSEQSLKEF-V------IPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2215 ~~~l~g~~~~~~l-~~ilp~ll~~-L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~-v------~~i~~~Li~~l~~~~~ 2285 (2622)
+.+ ...+|.+.+. +.+++.+.-..+-+|+..++..+.+ .+..+ . --+...+-+.|.-+.+
T Consensus 654 ----------~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e-q~~t~~~e~g~~~~yImqV~sqLLdp~~s 722 (1005)
T KOG2274|consen 654 ----------NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE-QLLTWHDEPGHNLWYIMQVLSQLLDPETS 722 (1005)
T ss_pred ----------HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH-HHHhhccCCCccHHHHHHHHHHHcCCccc
Confidence 111 1234444443 3455677778888999999877542 22211 1 1222334455554434
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhh
Q 000050 2286 WQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 2359 (2622)
Q Consensus 2286 ~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~ 2359 (2622)
...-..+-..+..|..+.|..+.|-+.++.+..++.++.. ...+-..-...+.+|.. ++.++++..|.+...
T Consensus 723 ds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL~Slp~ 795 (1005)
T KOG2274|consen 723 DSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFLSSLPG 795 (1005)
T ss_pred hhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHHHhCCC
Confidence 4344444555667778888888899999998888877764 67777777777777755 778899998888443
No 83
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0023 Score=83.50 Aligned_cols=436 Identities=18% Similarity=0.187 Sum_probs=239.0
Q ss_pred hhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchH-HHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh
Q 000050 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2622)
Q Consensus 1252 ~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~-~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~ 1330 (2622)
+..++|-+-++.... +-..+.-+..++...| +..|... ..+..++.-..++++.+|..|.+.++.+-
T Consensus 47 vSslF~dvvk~~~T~------dlelKKlvyLYl~nYa----~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-- 114 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTR------DLELKKLVYLYLMNYA----KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-- 114 (734)
T ss_pred hHhhhHHHHhhcccC------CchHHHHHHHHHHHhh----ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--
Confidence 444555444444431 1334544555554444 3444432 24677788889999999998877664331
Q ss_pred hccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000050 1331 MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2622)
Q Consensus 1331 ~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~ 1410 (2622)
+..-...+.+.+...+. +++..+|+.++.+.+.+-. .+++.....++++.|++++.|. ++.+-..|+-++..+.+.-
T Consensus 115 v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 11112344555555544 4556789999998887653 3444444558999999999977 7888888999888888765
Q ss_pred cc-cchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000050 1411 GR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1411 ~~-~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~ 1487 (2622)
+. .......+++..++..+.+-+.--+ ...+..+....++. ....++..+...|.+.+..+..++...+-....
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 42 1112223444455555443322222 22333333333332 223455555556666665555666666655554
Q ss_pred hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000050 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2622)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2622)
..+......+..+-|.++.++.. .++++-.|..-+..+....++ .+..-+..|.-...||-
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPi----------------- 329 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPI----------------- 329 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCch-----------------
Confidence 43332233344455555554443 447776666655555443321 11111111111112221
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
-++..=.+++..++.. . -+++++..+.+...+-+.+.-..+++|+|.++
T Consensus 330 -----------------------YvK~eKleil~~la~~--~------nl~qvl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 330 -----------------------YVKLEKLEILIELAND--A------NLAQVLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred -----------------------hhHHHHHHHHHHHhhH--h------HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 1111122233222221 1 23445666666666666777778888888888
Q ss_pred hhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-CChhhHHHHHHHHHHhhhh
Q 000050 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRS 1726 (2622)
Q Consensus 1648 ~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~al~~l~~L~~~ 1726 (2622)
....+. .+.++.+++.++...++ +...+...+-.+.+..+..+ +.+++.+-....+ .+++.|.+.+..++.-+..
T Consensus 379 ik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 379 IKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred hhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 776655 67777777777654433 22334444455555444332 4444444333333 4677888888888888877
Q ss_pred hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000050 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2622)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~l 1764 (2622)
+.+ ...++..+++...|+...|+..-+.+.-.+
T Consensus 455 i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 455 IEN-----ALELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred cCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 765 244677777888888777776655554443
No 84
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.13 Score=70.18 Aligned_cols=637 Identities=17% Similarity=0.192 Sum_probs=310.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-------hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE--R-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~--~-------~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~ 1958 (2622)
..++..+.+.++..|......++.++...-. . +...++..+.+.+.|-++-+|..+...+..+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3344467788888999888888888754311 1 2235888888889999999999999998888765432
Q ss_pred HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhcccCC------chhHHH
Q 000050 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQ------TSDTAL 2022 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~------~~~~aL 2022 (2622)
.......++......+.|.+.-||.+|++.+..+....+... +++.+..+-+.+.+.. ....-.
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 122446677777778889999999999998888866543211 1222222221221110 000000
Q ss_pred HHHHHHHhh-------h------cccccc---chhhhhhcCCCchH--HHH-HHHHHHHHhCCChhhhHhhhHHHHHHhc
Q 000050 2023 DGLKQILSV-------R------TTAVLP---HILPKLVHLPLSAF--NAH-ALGALAEVAGPGLNFHLGTILPALLSAM 2083 (2622)
Q Consensus 2023 ~~L~~il~~-------~------~~~ilp---~Lip~L~~~~~~~~--~~~-aL~sLa~~~g~~l~~~l~~il~~Ll~~l 2083 (2622)
.....++.. . +..-.+ .+-....+.|.... ... -+..+- -+-+|..-+...+|.+.+.+
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~--d~~sf~~~ms~~~~ii~~ll 550 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLE--DAISFSDEMSEAIPIISQLL 550 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0 000000 00000011110000 000 011111 13446666778888888887
Q ss_pred CCCC-HHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHH
Q 000050 2084 GDDD-MDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVL 2161 (2622)
Q Consensus 2084 ~~~~-~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~ 2161 (2622)
...+ .+|.+. +..+- .+..++-++...-+..++..+=..+..+|.+...+...++-..+ ..-......+.+.|+.+
T Consensus 551 ~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l 628 (1251)
T KOG0414|consen 551 FSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKL 628 (1251)
T ss_pred hcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHH
Confidence 5544 445443 22221 22334445545555555555545556688888888877754432 22212225667777777
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHH--hhchhhhhhhhcCCccccccCC--CCcCchhhHHHHH-H
Q 000050 2162 LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI--STSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFL-Q 2236 (2622)
Q Consensus 2162 l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~--~~~~l~~ilp~ll-~ 2236 (2622)
+.|....=+.+--+.++.++.. ...-+.++..+-+.. +..+.. .....++...++-.. .|.-+..-+..++ -
T Consensus 629 ~~~~s~~d~~slE~vl~~lv~~--~~Id~~Vi~~Lw~~ftlq~~~~~-~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~i 705 (1251)
T KOG0414|consen 629 LIDASIGDLTSLEEVLCELVAR--GYIDAAVINKLWEIFTLQKKGTT-NEQSRGSLIILGMASRSKPSIVLANLDLLVQI 705 (1251)
T ss_pred HhcccccchhhHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhccCc-hhhhccceeehhhhhccChhhhhhhhHHHHHh
Confidence 6655433233333334444331 111122222221111 110000 000111110011000 0111111111111 1
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChh---hhhhh----hhhhhHHHHHhhcC---CCC--H-hhHHHHHHHHHHHHHhc
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQ---SLKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~---~l~p~----v~~i~~~Li~~l~~---~~~--~-~vk~~al~~L~~L~~~~ 2303 (2622)
|+ |.+.....++..+..++.....+ .-.++ -..+.+.|-..+-. +.+ | .+...++.++-.+.. .
T Consensus 706 gl--g~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~ 782 (1251)
T KOG0414|consen 706 GL--GEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-L 782 (1251)
T ss_pred cc--CcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-C
Confidence 22 34555556666666665433210 01111 11122222222111 111 2 344555555544433 1
Q ss_pred CCCccCchHHHHHHHHHH------------hCCCC--------HHHHHHHHHHHHHHHhcc-cChhhHHHH---------
Q 000050 2304 GIALKPFLPQLQTTFIKC------------LQDST--------RTVRSSAALALGKLSALS-TRVDPLVGD--------- 2353 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~llk~------------L~d~~--------~~vR~~Aa~aLg~L~~~~-~~~~~ll~~--------- 2353 (2622)
|..+ ..++.+...+. ..|++ ..++..-..+.|.++.-+ -.++.-++.
T Consensus 783 Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~ 859 (1251)
T KOG0414|consen 783 PEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKT 859 (1251)
T ss_pred hHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 11222222111 11110 112222344555542211 011111110
Q ss_pred ------------HHHhhhcC-----C-----HhHHHHHHHHHHHHHhh---cCCCCChHHHHHHHHHHHHhhcC----CC
Q 000050 2354 ------------LLSSLQVS-----D-----AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH----DD 2404 (2622)
Q Consensus 2354 ------------Ll~~l~~~-----d-----~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~----~~ 2404 (2622)
-++..+.. + ...-....+++..+... .|. .....+..+++.+.++. ++
T Consensus 860 ~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~sd 936 (1251)
T KOG0414|consen 860 ELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLFSD 936 (1251)
T ss_pred HHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcCCC
Confidence 00000000 0 00112344455554443 131 23566777777777754 57
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcc
Q 000050 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD 2483 (2622)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~ 2483 (2622)
+..+.+|.-++|++.-.. ......-++-+... -.+++...|...+.+++-+....|. +.+...+.+...+.|
T Consensus 937 p~Lq~AAtLaL~klM~iS-a~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn------lie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 937 PELQAAATLALGKLMCIS-AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN------LIEPWTEHLYRRLRD 1009 (1251)
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc------ccchhhHHHHHHhcC
Confidence 889999999999987432 22222333333222 2356666787777788777666554 345667888899999
Q ss_pred CChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2484 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2484 ~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
.++.+|++|+-.+..++....- .....++.+..++.|++..+|..|-.-.+-++++. +.+-..|+.
T Consensus 1010 ~~~~vRkta~lvlshLILndmi-------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILNDMI-------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHhhhh-------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 9999999999999998877542 24567888999999999999999999999888876 444443333
No 85
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00043 Score=88.01 Aligned_cols=277 Identities=21% Similarity=0.208 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHH
Q 000050 1236 MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 1315 (2622)
Q Consensus 1236 a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~ 1315 (2622)
++-|..-+=..||.. ...++..+|... ..+.+|.+++.=+|-.+. ...+ .++.+.+-+.+...+.-
T Consensus 399 alyAlGLIhA~hG~~----~~~yL~~~Lk~~-----~~e~v~hG~cLGlGLa~m--GSa~---~eiYe~lKevLy~D~Av 464 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG----ITDYLLQQLKTA-----ENEVVRHGACLGLGLAGM--GSAN---EEIYEKLKEVLYNDSAV 464 (929)
T ss_pred hhhhhhccccCcCcc----HHHHHHHHHHhc-----cchhhhhhhhhhccchhc--cccc---HHHHHHHHHHHhccchh
Confidence 344433233335554 344444555542 245778777655554332 1112 34566666666655544
Q ss_pred HHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHH
Q 000050 1316 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKR 1395 (2622)
Q Consensus 1316 Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~ 1395 (2622)
.-.++.-+++-++ .+....+.++.|+..-.+-+.....|+-+.+++.++-+... +.-+.+.+++.++ ||..
T Consensus 465 sGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe------~Ad~lI~el~~dk-dpil 535 (929)
T KOG2062|consen 465 SGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE------DADPLIKELLRDK-DPIL 535 (929)
T ss_pred hhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh------hhHHHHHHHhcCC-chhh
Confidence 4444544454433 34445667777766554333346677888888887765432 3445677788887 8999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhcc-CCChhh
Q 000050 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRT 1474 (2622)
Q Consensus 1396 R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~-~~~w~~ 1474 (2622)
|.++++.+..---+-|+ ..-+..+++. ...|.+++||++|..+++.+.-.-+ ..+|..++.|. +-+..+
T Consensus 536 R~~Gm~t~alAy~GTgn--nkair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp-----~~~~s~V~lLses~N~HV 605 (929)
T KOG2062|consen 536 RYGGMYTLALAYVGTGN--NKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDP-----EQLPSTVSLLSESYNPHV 605 (929)
T ss_pred hhhhHHHHHHHHhccCc--hhhHHHhhcc---cccccchHHHHHHHHHheeeEecCh-----hhchHHHHHHhhhcChhh
Confidence 99998877665444442 2233444443 4789999999999999987744322 33455566665 357889
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---ChhHHhHHHHHHhhcCCCCh
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPND 1551 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~ilp~Ll~~l~d~~~ 1551 (2622)
|.|+..+||-.+.+... ...+..|-.+..|+..-||..|+-+++-+.-... +|.+..+...+.+.+.|..+
T Consensus 606 RyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 606 RYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 99999999866544322 2233444456779999999999988887754332 35666777777777766544
No 86
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.10 E-value=0.00011 Score=99.18 Aligned_cols=348 Identities=19% Similarity=0.205 Sum_probs=221.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQC 1496 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~ 1496 (2622)
..+++....++..+....|+...+++..+... ...+..+..+...+.-.....-.+++..+..+.. +.|......
T Consensus 62 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~---~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~ 138 (815)
T KOG1820|consen 62 IQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKL---EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA 138 (815)
T ss_pred eeeccchhhhcccccccccCcchhHHHHHHHh---hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence 35666777777766666777766666665111 1223344444444444444444445555555543 344333222
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh----HH----hHHHHHHhh----------------------c
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE----IA----SLVPTLLMG----------------------L 1546 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~----i~----~ilp~Ll~~----------------------l 1546 (2622)
+...++.+. +..||..+.+.+..+.++.++.. .. .++..+-.. -
T Consensus 139 ~~~~~~~l~------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (815)
T KOG1820|consen 139 FIKHVGSLA------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDE 212 (815)
T ss_pred ccccCcccc------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccc
Confidence 222222222 45688888888888887766421 01 111111110 0
Q ss_pred CCCChhHH-H----HHHHHHhccccccCC-------hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc
Q 000050 1547 TDPNDHTK-Y----SLDILLQTTFVNTVD-------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2622)
Q Consensus 1547 ~d~~~~~r-~----al~~L~~~~~~~~~~-------~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2622)
.+|+...+ . ..+... ..+....+ ...+..+.+.+...+.+..|..|..|.+.+...++... .....
T Consensus 213 ~~~n~~e~~~~~~~~~~~~~-~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~ 290 (815)
T KOG1820|consen 213 SDPNVKEQLEKPERGLQRSK-SGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVK 290 (815)
T ss_pred cCCChhhccccccccccccc-CCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-ccccc
Confidence 11111111 0 000000 01111011 13455677788888999999999999998888776433 12345
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~ 1691 (2622)
.|...+...+...+.|.+-.|-..++.+|..++..++.. +...+.|.+++.++...+ ..|..+..++..++..
T Consensus 291 ~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~-~l~d~l~~~~d~~~ns--- 366 (815)
T KOG1820|consen 291 GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKS-ELRDALLKALDAILNS--- 366 (815)
T ss_pred CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccH-HHHHHHHHHHHHHHhc---
Confidence 677777777777888999999999999999999999865 445667778777765443 2454444445555442
Q ss_pred hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--chhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
..+..+.+.++..+.+.++..|..+..+|.......+. .+..-+..++|.+.....|.+.+||.+|..++..+++.+|
T Consensus 367 ~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 24567778889999999999999999999998888773 3445578899999999999999999999999999999999
Q ss_pred hchhhhhHHHHh
Q 000050 1770 TTSLPLLLPAVE 1781 (2622)
Q Consensus 1770 ~~~i~~llp~l~ 1781 (2622)
...+..++..+.
T Consensus 447 e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 447 EEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHhhc
Confidence 887776665554
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.08 E-value=1.5e-05 Score=79.43 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hHHhHHHHHHhhcCCCC
Q 000050 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2622)
Q Consensus 1474 ~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ilp~Ll~~l~d~~ 1550 (2622)
.|+|++..|.+++...++.+..+++.|+|.++.+++|++++||..|+++|.++++..++. ++.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999999899999999999999999999999999999999999999988753 45788888888889998
Q ss_pred hhHHHHHHHH
Q 000050 1551 DHTKYSLDIL 1560 (2622)
Q Consensus 1551 ~~~r~al~~L 1560 (2622)
..+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655443
No 88
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00015 Score=90.87 Aligned_cols=270 Identities=17% Similarity=0.158 Sum_probs=168.9
Q ss_pred HHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---------hc
Q 000050 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA---------TT 1771 (2622)
Q Consensus 1701 l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~---------~~ 1771 (2622)
+...+.+.+..||..|+..+-.+.. |-.+ -..+.....+.++|++++||.+|.+.+...-+.++ .+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 4445567788999999998887776 3221 12356777888999999999999988876665551 12
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH------------hcC---------------------CcccccccCC
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK------------VAG---------------------TSGKALLEGG 1818 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~------------~~~---------------------~~~~~~~~~~ 1818 (2622)
..+..+..+-..+.|..|.+|..+.+++|.+=.. +.+ .+||.+..+.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 4456777788889999999999999999876210 000 0111111100
Q ss_pred -CCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC
Q 000050 1819 -SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2622)
Q Consensus 1819 -~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~ 1897 (2622)
.+++++.. ..+++. | -..++.-++.|.-.+||.+|+..++.++.+.|. +-...+..++.+++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 00000000 001110 0 011222346788889999999999999998774 2345677788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC
Q 000050 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2622)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~ 1977 (2622)
..++|..|+.+|..+.... .+..+.++.+...+.|.++++|.+.-.-|+.. .....+.+.-.+..++..+...-+|
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~~i~m~v~~lL~~L~kyPqD- 498 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLECIDMCVAHLLKNLGKYPQD- 498 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhhCCCC-
Confidence 9999999999999988762 34566778888888899999998866555431 1111122222223333333333234
Q ss_pred cHHHHHHHHHHHHHHHHHhCh
Q 000050 1978 ILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1978 d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
|.....|++.+.++.+.
T Consensus 499 ----rd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 499 ----RDEILRCMGRIGQNHRR 515 (823)
T ss_pred ----cHHHHHHHHHHhccChh
Confidence 34445577777666554
No 89
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.014 Score=74.32 Aligned_cols=458 Identities=18% Similarity=0.176 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhH
Q 000050 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2622)
Q Consensus 1881 ~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l 1959 (2622)
+.+..++..+.+-+.++++..-..|..|++.+-.. +.+.+.+.+-.+|.. .+...-+|+.++.++-.+..... +..
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~sp-Dl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSP-DLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCc-ccc
Confidence 44555566666667788888888888888765422 122223333333332 23446789999998888877643 222
Q ss_pred HHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccc
Q 000050 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2622)
Q Consensus 1960 ~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~ 2039 (2622)
. ...-...+...|.|.+..|--++...+..+.+...+ .....+|. ++..|..++...+-....+
T Consensus 184 ~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~-------------avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 N--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPL-------------AVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred C--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHH-------------HHHHHHHHHhhcccchhhc
Confidence 1 123344556788888888877777777766654433 22222332 2333333332211111111
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCC--CHHHHH-----H-HHHHHHHhhhccCh--hc
Q 000050 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD--DMDVQS-----L-AKEAAETVTLVIDE--EG 2109 (2622)
Q Consensus 2040 Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~--~~~vr~-----~-a~~al~~l~~~~~~--~~ 2109 (2622)
.-...-.|....-..+.|.....--...-...+..++..+++...++ ...++. + ..+++.-+ ..+|. +.
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~l 326 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPEL 326 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHH
Confidence 10000001111011112211100001112233444555555554421 112211 1 12233222 23343 34
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccc
Q 000050 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEV 2188 (2622)
Q Consensus 2110 l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~~~~~~ 2188 (2622)
+...+..|.+.+.+.....|..|+..+..++.... -.+.+..-...++.++. +.|..+|+.|.+.|-.++...
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~---- 400 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS---- 400 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----
Confidence 77788888999999999999999999988876421 11222333556677777 889999999998888876532
Q ss_pred hhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhh
Q 000050 2189 QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2622)
Q Consensus 2189 l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~ 2268 (2622)
....|+.-+++.|.+.+...|+....-++-+++..- ..+.=|
T Consensus 401 -------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy~Wy 442 (938)
T KOG1077|consen 401 -------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDYSWY 442 (938)
T ss_pred -------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCcchh
Confidence 122344455566666677778777777777776653 345555
Q ss_pred hhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhc---
Q 000050 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL--- 2343 (2622)
Q Consensus 2269 v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~--- 2343 (2622)
|+.+ --|+|+.++..+++|=.-.++.+. -...+++|. -..++..|+.+ ++.+-..++.-||....+
T Consensus 443 Vdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 443 VDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD 513 (938)
T ss_pred HHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC
Confidence 5444 457787776544443222111110 011222221 12344555555 777888888888877443
Q ss_pred ccChhh--HHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000050 2344 STRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2622)
Q Consensus 2344 ~~~~~~--ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2622)
+|+..+ .+.-+.+.+....+..|...+..+..++... ++..+.|+........--|.+++.-+.+-|.
T Consensus 514 ~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 514 DPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred CCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 455444 3444556666566677777777777777542 4566677777666555556666655555543
No 90
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.2 Score=68.72 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=106.4
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh-cccChhhHHHHHHHhhhcC
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSLQVS 2361 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~-d~~~~vR~~Aa~aLg~L~~-~~~~~~~ll~~Ll~~l~~~ 2361 (2622)
.+++.+.+|-.+|+.+.--.. .|...=.+.|+..+. .+++.+|..+..++|.++. +..-+++.-+-|...+++.
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE 1010 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc
Confidence 467899999999998764322 344444556666666 4799999999999999954 4555888888899999999
Q ss_pred CHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCC
Q 000050 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSP 2441 (2622)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~ 2441 (2622)
+..||.+++-.|..+|-+. + -..++.+-. +..++.|+++.++..|-.-+..|..-- ..+..++++++.++.+.
T Consensus 1011 ~~~vRkta~lvlshLILnd---m-iKVKGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILND---M-IKVKGQLSE-MALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cHHHHHHHHHHHHHHHHhh---h-hHhcccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 9999999999999988642 1 122233333 335778999999988776666666432 35777888887766554
No 91
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.14 Score=66.22 Aligned_cols=342 Identities=15% Similarity=0.141 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhHHHH-HHHHHH
Q 000050 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVIQ-MLPLLL 1426 (2622)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-------~~~~~~~R~~al~al~~La~~~~--~~~~~~v~~-ilp~ll 1426 (2622)
+|+.++-......+...+. ++++++...+. +-+|++..++|+..+..+..... ..+...+.. ++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555555555566666565 78888887772 12367788899999888887322 233333443 578888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhh--CchhhhhhhhhhHHH
Q 000050 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2622)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~--~p~~l~~~L~~ivp~ 1503 (2622)
..+.++.-..|..+++.+..+-..+++.++ ........+.+.+..-.++..|..++.-+..+ ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999999999999999888777776654 55666667778887778888888888777654 334577888888988
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHhhhcCC--hhH-HhHHHHHHhh----cCCC---ChhHH----HHHHHHHhc-cccc
Q 000050 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMG----LTDP---NDHTK----YSLDILLQT-TFVN 1567 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~ilp~Ll~~----l~d~---~~~~r----~al~~L~~~-~~~~ 1567 (2622)
++.+-++-+-++-..+.+.+ +.+.+.+.. +++ ..++..+++. +.++ ...+. .|...|..+ +.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 88888776666655554433 344444331 122 3344433333 3222 11111 121111110 1111
Q ss_pred cCC-h-----hhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000050 1568 TVD-A-----PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2622)
Q Consensus 1568 ~~~-~-----~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~vR~~a~ 1640 (2622)
..+ . .......|.+.=.+.+.-.+.-+.|++++.+..-.. +++.|....+...+.+.+.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1 122334444444455555577788888887643321 35556666666666666666553 5556777
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhhhcCC-hHHHHHHHHHHHHHHHHhchhHHHhHhHHHHH
Q 000050 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703 (2622)
Q Consensus 1641 ~aL~~L~~~~g~~------~~~~ll~~Ll~~L~~~~~-~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~ 1703 (2622)
-++..++..-+.+ |..-+...+...+.++.. -.++.++++-+-.++-..+.+-+++.+|.+.+
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~ 773 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFIS 773 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHH
Confidence 7788877644333 223333444455554433 13555666555555555555555555554443
No 92
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.3 Score=69.90 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcccc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLF 1414 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~--~~~~~R~~al~al~~La~~~~~~~ 1414 (2622)
+....+...+........|+-.+.+++.+... |.... .+.++..+...+.+. +++....++.-+++.+.+..|+..
T Consensus 51 ~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~-~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~ 128 (2067)
T KOG1822|consen 51 KLEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFS-LYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMI 128 (2067)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhh-HHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhh
Confidence 34556667777777788999999999999987 54332 334555666666554 466677788888999999888766
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC
Q 000050 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~ 1489 (2622)
..-+...+..+.+..+..+..+|......+......+... ..+.+.-..-..+.+....+|..+..++.++....
T Consensus 129 ~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 129 GRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 5556667777777777777777777666655554444311 23444444445566666678999999988887654
Q ss_pred chhh-hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc
Q 000050 1490 PQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1490 p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 209 ~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 209 GPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred CccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 4333 3445555555667778889999999999999988755
No 93
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.16 Score=65.81 Aligned_cols=285 Identities=21% Similarity=0.223 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHH
Q 000050 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1635 vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~ 1714 (2622)
...-|.-++|-+-...|. +....|.+.|++.+...+|.+++-++|-... |... .++...+...+...+.-.=+
T Consensus 395 ~EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~m--GSa~-~eiYe~lKevLy~D~AvsGE 467 (929)
T KOG2062|consen 395 KEGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGM--GSAN-EEIYEKLKEVLYNDSAVSGE 467 (929)
T ss_pred cccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhc--cccc-HHHHHHHHHHHhccchhhhh
Confidence 334677788877665554 4677788888888778899999888775433 3221 22333333333333333334
Q ss_pred HHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHH
Q 000050 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~ 1793 (2622)
++-..++-+-.-.+. ++.+.-++.+..+ .++.+.....-.+ . +..|+... ..-|.+.+.+.|++.-.|.
T Consensus 468 AAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGi-a-L~~ygrqe--~Ad~lI~el~~dkdpilR~ 537 (929)
T KOG2062|consen 468 AAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGI-A-LVVYGRQE--DADPLIKELLRDKDPILRY 537 (929)
T ss_pred HHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhH-H-HHHhhhhh--hhHHHHHHHhcCCchhhhh
Confidence 444444433222211 3344545555443 2233322211111 1 12233221 2223344445666666666
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHH
Q 000050 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAALHVWKTIV 1872 (2622)
Q Consensus 1794 ~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~-~~~~D~~~~VR~aA~~~l~~l~ 1872 (2622)
+.+-.++- ...|.. .+..+..+. ...+|.+..||++|.-.+|.+.
T Consensus 538 ~Gm~t~al---------------------------------Ay~GTg-nnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 538 GGMYTLAL---------------------------------AYVGTG-NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred hhHHHHHH---------------------------------HHhccC-chhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 54433321 111111 111222222 2368999999999999999888
Q ss_pred hhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000050 1873 ANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2622)
Q Consensus 1873 ~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li 1951 (2622)
-..|.+ .+.++..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-|||+||.+++-|+
T Consensus 584 ~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 584 FRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 776654 233333444 558899999999999988877754 34455555566888899999999999887
Q ss_pred HhhChhhHHHhHHhHHHHHHHHhcCCcHHHH
Q 000050 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2622)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR 1982 (2622)
-++.+ ..-|.+..+...+.+.+.|.+++..
T Consensus 653 ~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 653 IQQTE-QLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred Hhccc-ccCchHHHHHHHHHHHhhhhhhHHH
Confidence 76653 4445567777777778888766643
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0031 Score=79.69 Aligned_cols=245 Identities=20% Similarity=0.182 Sum_probs=147.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000050 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2622)
Q Consensus 1738 ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2622)
+...+..+..|.+..||..|.+++-.+-+ +-+.-..+.....+.+.|++..+|.++++++--+-+..++..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~------- 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL------- 269 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-------
Confidence 44446777788889999999998776654 222223345556677889999999999999887755443211
Q ss_pred CCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCC
Q 000050 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2622)
Q Consensus 1818 ~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~ 1897 (2622)
+.+ +.+ ....+..+..+|...+|.++.||-.|.+.+|.+-.....- +.+++-+.++..+.-.
T Consensus 270 --e~e--~~e-----------~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~---i~QTLdKKlms~lRRk 331 (823)
T KOG2259|consen 270 --ERE--SEE-----------EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI---IQQTLDKKLMSRLRRK 331 (823)
T ss_pred --cch--hhh-----------hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH---HHHHHHHHHhhhhhhh
Confidence 000 000 0123456677777889999999999999999876543221 1122333333322110
Q ss_pred -CHHHHHHHHHHHHHHHHH--hccch-------------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHH
Q 000050 1898 -SSERRQVAGRALGELVRK--LGERV-------------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2622)
Q Consensus 1898 -~~~~R~~A~~~L~~lv~~--~~~~~-------------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~ 1961 (2622)
....|-.....=|++... .+..+ -......+..++.|+-.+||.++...++.+..+..+
T Consensus 332 r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----- 406 (823)
T KOG2259|consen 332 RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----- 406 (823)
T ss_pred hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-----
Confidence 000011111111111000 00000 011224567788888888999999888887654433
Q ss_pred hHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCC
Q 000050 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2622)
Q Consensus 1962 ~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2622)
|-...+..+..+++|...+||..|..++..+..+.. .-++.++.+++.|++..
T Consensus 407 FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 407 FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRS 459 (823)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcC
Confidence 234556677788888889999998888888876632 33567788888887654
No 95
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.066 Score=68.61 Aligned_cols=351 Identities=15% Similarity=0.208 Sum_probs=189.3
Q ss_pred cCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 000050 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2622)
Q Consensus 1348 ~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~ 1427 (2622)
.+..|.+...+...+..++..-. +-.+ -++..+++-+.+. |+.... .|+.+++..-++.|..-+..=+|.++-
T Consensus 84 ss~kysEKqIGYl~is~L~n~n~-dl~k--lvin~iknDL~sr-n~~fv~---LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNENS-DLMK--LVINSIKNDLSSR-NPTFVC---LALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcch-HHHH--HHHHHHHhhhhcC-CcHHHH---HHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 45556666666666665554321 1111 2333344444444 454444 444555544444443322222232222
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhh
Q 000050 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2622)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~ 1506 (2622)
-++..+.||+.++-|+-.+....++-. .......++..|++++.++-.++..++..++...|+....+++.-+..|..
T Consensus 157 -S~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r 235 (938)
T KOG1077|consen 157 -SGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR 235 (938)
T ss_pred -CCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH
Confidence 257788999999999988888754331 235566677788888888888899999999988888888777776666554
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhc---CCCChhHH--HHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL---TDPNDHTK--YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l---~d~~~~~r--~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
.........++. .--.+++|.+..-+=.++... .|+....| ++++.+..
T Consensus 236 iv~~~~t~~qdY-------Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn------------------- 289 (938)
T KOG1077|consen 236 IVVVVGTSLQDY-------TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN------------------- 289 (938)
T ss_pred HHhhcccchhhc-------eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-------------------
Confidence 432211111000 001123333321111111111 12211111 22222221
Q ss_pred HhhhcC----CCH---HHH-HHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-
Q 000050 1582 HRGLRE----RSA---ETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE- 1652 (2622)
Q Consensus 1582 ~~~l~d----~~~---~vr-~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~- 1652 (2622)
..++ ++. ..+ ....+++. ++..++.. ...+...+..|.+.+.+....+|.-+.+.+..++..-..
T Consensus 290 --k~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~ 363 (938)
T KOG1077|consen 290 --KAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI 363 (938)
T ss_pred --ccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH
Confidence 1110 000 111 11122222 22222211 123455667777777888889999998888888765110
Q ss_pred CCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh
Q 000050 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 1732 (2622)
+....-...++..|+.+....+|+.+..-|=.++. .+..+.++..+++.+...++..|+....=..-+++.+..++.
T Consensus 364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~ 440 (938)
T KOG1077|consen 364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYS 440 (938)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc
Confidence 11222244566777766666678777665554443 344567778888888888999998877777777777777766
Q ss_pred hhHHhHHHH
Q 000050 1733 NYLQQVLPA 1741 (2622)
Q Consensus 1733 p~l~~ii~~ 1741 (2622)
=|+.-++..
T Consensus 441 WyVdviLqL 449 (938)
T KOG1077|consen 441 WYVDVILQL 449 (938)
T ss_pred hhHHHHHHH
Confidence 665554443
No 96
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.91 E-value=0.014 Score=79.07 Aligned_cols=371 Identities=15% Similarity=0.156 Sum_probs=207.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK 1457 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~ 1457 (2622)
..+..++... +.-.| .++..+..+++...-...-.-..+++.+.+++...+..+.-.+...++.+.-.-... .-.
T Consensus 253 kk~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~ 330 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES 330 (708)
T ss_pred HHHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3344444443 34444 556667777765542222233478889999998888888877777777664321111 225
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-h--
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E-- 1534 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~-- 1534 (2622)
.++|.+...+.+++-.....++.+|.++++...-.-.-.-.+++|.+..++.|++ .|..|...|.+++..-... .
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 7899999999988888899999999999875332211112467888999998754 5566777888776532222 1
Q ss_pred HHhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChh-hh-hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC
Q 000050 1535 IASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAP-SL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2622)
Q Consensus 1535 i~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~-~l-~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2622)
....+|.+.+.+. .++..+. +.+..++..........- .- ..+-..+.++++.+++ .....+.|++..-+..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPL 484 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchH
Confidence 2456777777653 3444443 222222211110000000 00 1111222333333332 2345677776642111
Q ss_pred -CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhhhcCCh-HHHHHHHHH
Q 000050 1611 -KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNSN-VERSGAAQG 1681 (2622)
Q Consensus 1611 -~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-----~~--~~ll~~Ll~~L~~~~~~-~~r~~a~~~ 1681 (2622)
..+.+|+..++ ..+..++. ....+.|+|.++...-++ .+ ..++|++.+.|...... .....+...
T Consensus 485 k~~f~~~i~~L~----~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 485 KELFVDFIGDLA----KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHH----HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 12344444333 33433322 357778888887743222 12 36889999998765432 244455555
Q ss_pred HHHHHHHhchhH-H--HhHhHHHHHhccCC--ChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHH
Q 000050 1682 LSEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVR 1754 (2622)
Q Consensus 1682 L~~i~~~~g~~~-l--~~llp~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR 1754 (2622)
+|.++..-.... + ..+++.++..++.. +.+.--..+.+|..+..+ +......+ ..+...++..+.|.+..||
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 665553211111 1 35667777766543 455444555566665544 22111111 3477788999999999999
Q ss_pred HHHHHHHHHHHH
Q 000050 1755 DAALGAGHVLVE 1766 (2622)
Q Consensus 1755 ~~al~al~~lv~ 1766 (2622)
..|-.++..+.+
T Consensus 638 ~~~d~~Ldii~e 649 (708)
T PF05804_consen 638 KVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999888876654
No 97
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.039 Score=71.94 Aligned_cols=297 Identities=18% Similarity=0.173 Sum_probs=170.3
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2622)
+..++.|.+-..+.+...-+-..|+.++..+-...+ ..+.|.+.. |--.+.. .....|-+|+.+|+.++.+.|.
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-r~l~pavs~----Lq~flss-p~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-RELAPAVSV----LQLFLSS-PKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-hhcchHHHH----HHHHhcC-cHHHHHHHHHHHHHHHHHhCCc
Confidence 344566666667777777778888888888876655 566663322 2222332 3566899999999999987765
Q ss_pred CccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCC
Q 000050 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS 2385 (2622)
Q Consensus 2306 ~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~ 2385 (2622)
.+..--..|. ...+|.|+.+-.-|...|-+-. ...+++.++..+-.-..+-+.+-+....+|++.++...+..
T Consensus 316 ~v~~cN~elE----~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k-- 388 (865)
T KOG1078|consen 316 AVTVCNLDLE----SLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK-- 388 (865)
T ss_pred cccccchhHH----hhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--
Confidence 4432222222 3456666555544444332211 11234545444444333323334444555565555543321
Q ss_pred hHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc
Q 000050 2386 SAVKIRVYSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI 2464 (2622)
Q Consensus 2386 ~~~~~~i~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i 2464 (2622)
...+++.|...+.+ ..-+..+...+++-.+....|+. -...+.++...+.+... +.-....|+-+.++.|...
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCC
Confidence 22344445444443 23345566677777777666642 22233333333333332 2224445666667777665
Q ss_pred cCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000050 2465 SMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 2544 (2622)
Q Consensus 2465 ~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a 2544 (2622)
.-. ..+.++.....=.+.-+|.+|+.|+.++...+. .....+...+.++++|.+.+||..|...++.+-
T Consensus 463 ~Ps----kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPS----KYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Ccc----hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 322 334444444444677899999999999873321 234567778888999999999999999999887
Q ss_pred hhCchhhh
Q 000050 2545 KANPSAIM 2552 (2622)
Q Consensus 2545 ~~~~~~v~ 2552 (2622)
........
T Consensus 532 ~~~~~l~~ 539 (865)
T KOG1078|consen 532 EKDDVLNQ 539 (865)
T ss_pred hhhhhhcc
Confidence 54443333
No 98
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.85 E-value=0.00079 Score=82.25 Aligned_cols=198 Identities=19% Similarity=0.159 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1336 ~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
..++..++..+...+....|.+|...|-.+...-+-.... ...++..+.+.+.+.++...|..|+..++.+++.=+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4567777777776666678888888777776543322222 12566677778887557888999999999999988888
Q ss_pred chhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc-h
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-Q 1491 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p-~ 1491 (2622)
|.++....+..++.+-.|.++ .+|.++.+|+..+.+..+-..+..+-|.++. .+...-..++..+..+.+..+ +
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence 889999999999999999876 4566667788888888888888888887766 222333345556777776544 4
Q ss_pred hhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
.+...++++.|.+++..+.+...||+.|+.||..+...++-.++.+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 5777899999999999999999999999999999999887444433
No 99
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.01 Score=73.39 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=104.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc-hh
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER-VL 1921 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~-~l 1921 (2622)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-| .+.++...+..+|..+.+..... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 34444555678999999999999999999999999999999999999888775 45788888999999888776443 55
Q ss_pred hhHHHHHh---hhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH---HHHhcCCcHHHHH
Q 000050 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRE 1983 (2622)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l---~~~L~d~d~~VR~ 1983 (2622)
+.++++-. ..+.+.+++.|.++...+|.+....++..-..|.+++...+ .-.+.|+++.|-.
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ 405 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR 405 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH
Confidence 66666543 45678899999999999998877666543333444444332 3356788887654
No 100
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.82 E-value=0.0022 Score=82.12 Aligned_cols=242 Identities=18% Similarity=0.081 Sum_probs=146.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~ 1417 (2622)
.++.++..+...++..++..++.++... . ....++.+.+.+.+. +..+|.++..+|+.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~----~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ-----E----DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc-----C----ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----------
Confidence 4455555554444444544444443211 0 002356666677665 5667777777665422
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000050 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2622)
-....+.+...+.++++.||.++..++...- ..-.+.+...|.+.+..+|..++.+||.+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 1345566667777778888877765554421 1224456666677777888888888877643
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhH
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i 1577 (2622)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+..+... . .. ...
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal--~---~~---~~a 241 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAV--A---GG---PDA 241 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHh--C---Cc---hhH
Confidence 3345566778999999999999999988864 1 223344443334433333222211110 0 11 146
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1578 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
++.|...+++. .+|..+..++|.+. ++ ..++.|.+.+.|+. +|..|..++..+..
T Consensus 242 ~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 242 QAWLRELLQAA--ATRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 66777777765 48999999988763 32 36777888887753 88999998888765
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.82 E-value=0.0018 Score=83.02 Aligned_cols=235 Identities=25% Similarity=0.273 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcC
Q 000050 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2622)
Q Consensus 1351 ~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~ 1430 (2622)
++..|..+++.++.+- ....++.+...+.+. ++.+|..|..+++.+-. ...+|.++.++.
T Consensus 56 ~~~vr~~aa~~l~~~~---------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~ 115 (335)
T COG1413 56 DLLVRLSAAVALGELG---------SEEAVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLE 115 (335)
T ss_pred CHHHHHHHHHHHhhhc---------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHH
Confidence 4556666665533221 113455555555555 46666666654433211 233444444444
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC------------CChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000050 1431 -DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED------------KAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2622)
Q Consensus 1431 -D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~------------~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2622)
|++..||..+..+++.+.. ...++.+++.+.+ ..|..|..+...++.+..
T Consensus 116 ~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---------- 178 (335)
T COG1413 116 NDENEGVRAAAARALGKLGD-------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---------- 178 (335)
T ss_pred cCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------
Confidence 5666666666666655521 1223334444433 225667777777776643
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhh
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~ 1576 (2622)
+...+.+.+.+.|....||.+|..+|+.++... ..+.+.+...+.|++..+| .++..++.. ....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~ 244 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEE 244 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------Ccch
Confidence 445667788899999999999999999997642 3456777777888887777 455555421 1223
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
..+.+..++.+.++.++..+....+.. ........+...+.|..+.+|..+..+++....
T Consensus 245 ~~~~l~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 245 AVDALAKALEDEDVILALLAAAALGAL------------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHhccchHHHHHHHHHhccc------------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 455666666666666666555544411 011234445555667777777777777776544
No 102
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.79 E-value=0.0018 Score=82.78 Aligned_cols=239 Identities=18% Similarity=0.150 Sum_probs=154.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
.++.+...+....+..++..+..++.. .-+ + ..+..++..+.|+++.||..+..+++.+ ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~~----~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA---QED----A---LDLRSVLAVLQAGPEGLCAGIQAALGWL-------GGRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc---cCC----h---HHHHHHHHHhcCCCHHHHHHHHHHHhcC-------CchH
Confidence 455566666433356666555443322 111 1 2377888899999999999999998766 3345
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2622)
..+.++..+.+.+..+|..++.+++... ..-.+.+...++|.++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 6677888889999999998887777522 12245677788999999999999999998753 34
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1539 lp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
+|.|...+.|++..+| .|+..+... . . ....+.+.....+.....+..+..++... +.
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~l---G---~---~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLA---G---S---RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHc---C---C---HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 5667777889999888 355555321 0 0 11223334333344444444444444432 22
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 000050 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i 1685 (2622)
+..++.|..++.++. +|..++.++|.+.. +..++.|+..+.++. .+..+..++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777888888754 89999999887543 456777777765442 555555555544
No 103
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.78 E-value=6.9e-05 Score=81.85 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=92.2
Q ss_pred HhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
++|..|++.++|++|.++++.++..+... ..+.+++..+..|+.| +.|+|.++..++..++..+|..+.++++.
T Consensus 33 FKh~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~ 106 (169)
T PF08623_consen 33 FKHKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDS 106 (169)
T ss_dssp CEEEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTT
T ss_pred ceeeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46788899999999999999999987643 3578899999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhhcC--Ccchh----------hchhHHHHHHH-hcccccchhHHHHHHHhh
Q 000050 2558 FGPALAECLKD--GSTPV----------RLAAERCAVHA-FQLTRGSEYIQGAQKFIT 2602 (2622)
Q Consensus 2558 l~p~l~~~~~~--~~~~v----------k~aae~a~~~~-~~~~~~~~~~~~~~~~l~ 2602 (2622)
+++++-+.+.. +..+| .+++.||+.++ ..+...+...+.+.+|++
T Consensus 107 l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 107 LVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp THHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 99999998743 34445 45566888888 666554322236666663
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.033 Score=64.71 Aligned_cols=252 Identities=16% Similarity=0.165 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHhc-cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH----HhHHHHHHHHhcCCc
Q 000050 1904 VAGRALGELVRKLG-ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~-~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~d 1978 (2622)
....||.++.+... ....|.+.|.|+.++..++..++.-+|..++.+++.+....+.+.+ ..+++.+..++...|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 36778888877653 4477999999999999999999999999999999988765554433 578888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHH
Q 000050 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 2058 (2622)
Q Consensus 1979 ~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~ 2058 (2622)
.+|..+|.+.+.++... +..++-+.| ++..++.-+..|..-+ .+..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaakc-------------------ndiaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAAKC-------------------NDIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHhhh-------------------hhHHHHHHHH
Confidence 99999999988887532 111111111 1111111111111111 0112233333
Q ss_pred HHHHHhCCC--hhhh--HhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhcc-Chhc--HHHHHHHHHhhc--CCCChhH
Q 000050 2059 ALAEVAGPG--LNFH--LGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKGV--GDNQASI 2128 (2622)
Q Consensus 2059 sLa~~~g~~--l~~~--l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~-~~~~--l~~ll~~Ll~~l--~d~~~~v 2128 (2622)
-+.+.+.-. ...+ -..++..|...+.. +|.-++...++..-.+...- +.+. ...+++.+...+ .|.+|.-
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 333322110 0111 13455556666654 55555554444433333211 1111 233444444444 2556766
Q ss_pred HHHHHHHHHHHHhhc------cccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000050 2129 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2129 R~~A~~~L~~l~~~~------~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
+..+...++.|+.+. +......++..+...+.+++..|++...+|..+++.+...
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 666777777776432 1222333455566667777778888999999999887554
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.73 E-value=0.0052 Score=78.81 Aligned_cols=201 Identities=26% Similarity=0.312 Sum_probs=135.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
...+.++..+.|++..||..+...++.+ +-+..+|.+...+.+.++.+|..+..+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4567788889999999999988775544 557889999999999999999999998886642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCC------------hhHH-HHHHHHHhccc
Q 000050 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2622)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2622)
.+|.+.+.+. |.+..||..|..+|+.+...- .+..++..+.++. ..+| .++..+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5677777777 799999999999999987532 2444555555543 1233 233333210
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..++.++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234566667777777778888877777665421 2356677777778888888887777765
Q ss_pred HHhhhCCCCchhhHHHHHHHhhhcC
Q 000050 1646 LIRGMGEENFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1646 L~~~~g~~~~~~ll~~Ll~~L~~~~ 1670 (2622)
+. .....+.+...+.+..
T Consensus 240 ~~-------~~~~~~~l~~~l~~~~ 257 (335)
T COG1413 240 IG-------DEEAVDALAKALEDED 257 (335)
T ss_pred cC-------cchhHHHHHHHHhccc
Confidence 32 2333444445554443
No 106
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.15 Score=66.83 Aligned_cols=314 Identities=15% Similarity=0.138 Sum_probs=161.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHH
Q 000050 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2622)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2622)
.+.+..+++ |..-|+..-.+++.++....+ +.-+...+.+-+...++..|-.|..++-.+....--+++.+++.
T Consensus 68 ~~tKlfQsk-d~~LRr~vYl~Ikels~ised-----viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~k 141 (865)
T KOG1078|consen 68 AITKLFQSK-DVSLRRMVYLAIKELSKISED-----VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMK 141 (865)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHhhccccchh-----hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 345555655 565666555555555432221 22333444444555566677666666666544433344444443
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHH
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~il 1539 (2622)
.. +-+....+... .++.++.. ...........++.+ ...+.+..|+..|..-|.++.+.-+ -.+..++
T Consensus 142 qa---ivd~~~avSsa--alvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv 211 (865)
T KOG1078|consen 142 QA---IVDKNPAVSSA--ALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLV 211 (865)
T ss_pred hH---eeccccccchH--HHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 22 22222222211 12222221 122222222222222 2333345677777776666654211 0112233
Q ss_pred HHHHh-hcCCCChh---HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc
Q 000050 1540 PTLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2622)
Q Consensus 1540 p~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2622)
..+.. .+.+|-.. +|.+.+.+-. . ......+.|.+.+.+.++..-+-..|+..+..+... .+..+.|
T Consensus 212 ~~~~~~~~~~~~A~~~lir~~~~~l~~------~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p 282 (865)
T KOG1078|consen 212 QKFTRGSLKSPLAVCMLIRIASELLKE------N-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP 282 (865)
T ss_pred HHHccccccchhHHHHHHHHHHHHhhh------c-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch
Confidence 33222 12222211 1212121111 1 223345778888888888878888888888777653 2234444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHH
Q 000050 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2622)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~ 1695 (2622)
.+..+.-.+..+.+.+|-.|.+.|..++-..+.... ..-..| +.+-++ ..|.-+..++..+.+.......+
T Consensus 283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~el-E~lItd---~NrsIat~AITtLLKTG~e~sv~ 353 (865)
T KOG1078|consen 283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLDL-ESLITD---SNRSIATLAITTLLKTGTESSVD 353 (865)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchhH-Hhhhcc---cccchhHHHHHHHHHhcchhHHH
Confidence 566777788899999999999999999886653310 000111 122222 24556666677777665555666
Q ss_pred hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1696 ~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.++..+-....+-+.+-+.....++..++..++.
T Consensus 354 rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 6666666655555555565566666666666554
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.38 Score=65.05 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=117.1
Q ss_pred ccCCChhhHHHHHH-HHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhh
Q 000050 1467 LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~-~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~ 1545 (2622)
+.+++-+.|..|+. ++..|..+.. ++.++|.+++.....+.++++..--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 55555555655555 4456665433 45566666666666688999998888888887543 2334567889999
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhh-hHHH
Q 000050 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2622)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2622)
++||++.+| .|+..+.... ....+..+++.+.+.++|+++.||+.|+.++..+.+. ++ ++ |.+. ....
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~l--~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-DL--YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-hh--hhcccHHHH
Confidence 999999999 5677664311 2345567889999999999999999999999998875 21 11 2333 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+..++.|.+|.|-..|..++..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999988888887776553
No 108
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.65 E-value=5.6e-05 Score=67.69 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000050 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2622)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2622)
|++|.+|+.+||.++...+..+..+++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
No 109
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.086 Score=68.25 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC-
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2622)
|.+..-|+.-++.+...+.++|. +-.++++.+++++.|.++..-......+.+.+++.+. ....++..+.+.+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 34455677777777777777764 4556777788888999888777777788888877643 12223333333222
Q ss_pred CCChhhHHhHHHHHHHHHH
Q 000050 1934 DPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~ 1952 (2622)
-+..++-.++++.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1345566677777776543
No 110
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.36 Score=65.23 Aligned_cols=104 Identities=21% Similarity=0.296 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
++.+++-+++...+.+.+.|...---|-...+.-+ .-.-..++.+.+-+.|+++.+|..|+..++.+ ...+.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el 124 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKEL 124 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHH
Confidence 55566666666667777777655544444333322 22234456777788999999999999888865 23456
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2622)
++.+++.+++++.|+++.||..|+-|+..+++
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999875
No 111
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0084 Score=74.22 Aligned_cols=232 Identities=19% Similarity=0.216 Sum_probs=152.4
Q ss_pred cchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCc
Q 000050 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2622)
Q Consensus 1296 ~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~----~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~ 1371 (2622)
+-+..++..+..-..||+..+|..++.||+.......++. +..++.++..|.+..+..+-..+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 5567888888888999999999999999988876644433 456777777777777778888999999988876554
Q ss_pred cchhhh--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH----HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000050 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV----IQMLPLLLVAFSDQVVAVREAAECAAR 1445 (2622)
Q Consensus 1372 ~~l~~~--~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~ 1445 (2622)
..+..+ ++...+.++..+. ++..|-+|..+|+.++...|+..+.++ .+-+..++--+.|+++.|-.|+...+.
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 444322 4555666777776 688999999999999998886544433 222334555678999999888877776
Q ss_pred HHHHhhcHHhHHhh--------------------------HHHHHhhc-------cCCChhh-HHHHHHHHHHHHhhCch
Q 000050 1446 AMMSQLSAQGVKLV--------------------------LPSLLKGL-------EDKAWRT-KQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1446 ~i~~~l~~~~v~~i--------------------------lp~Ll~~L-------~~~~w~~-r~~a~~~L~~la~~~p~ 1491 (2622)
.+..++.-+....+ .|.++..+ -+..|.. |..+...-+........
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 66554433322222 22222211 2346733 33333333333322221
Q ss_pred hhhhh--hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1492 ~l~~~--L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
+.-.+ ...+...+..+..|+-++|+..|.+|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 11111 23445566667889999999999999987753
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0093 Score=78.00 Aligned_cols=220 Identities=18% Similarity=0.181 Sum_probs=151.0
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhH
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~ll 1777 (2622)
+...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--.|.++...+++.|+++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 34455566788889999999999999874432212234569999999999999999999999998999988888666655
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhCh---hhHHHHHHHHHHh
Q 000050 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1852 (2622)
Q Consensus 1778 p~l~~~l~d~--~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~---e~~~~il~~L~~~ 1852 (2622)
......-... +.+++.+ ++++.++.. +|+ .+++.++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa-------------------------------~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVG--EAILKVAQA-------------------------------LGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehHH--HHHHHHHHH-------------------------------hccHHHHHHHHHHHHHHHh
Confidence 5444322221 3344433 444444322 221 2333344444445
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhh-------hH
Q 000050 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SI 1924 (2622)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~-------~l 1924 (2622)
..|++..-|..++..+|.++..+...+..++.+++..++.... +.+.-+|..|+..+..+...+|...+| ..
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 5688888899999999999987766666777777777776655 677889999999999999999977655 22
Q ss_pred HHHHhhhcC-CCChhhHHhHHHHHHHH
Q 000050 1925 IPILSRGLK-DPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1925 lp~L~~~L~-d~~~~vR~~a~~~L~~l 1950 (2622)
...+....+ +++..+|..+|.++.++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 333333333 34556777777777665
No 113
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0075 Score=77.43 Aligned_cols=307 Identities=17% Similarity=0.170 Sum_probs=188.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHH
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~i 2154 (2622)
+.+.+-+-|..+++-+|...+..+..+= +.+-+.+++|.+...+.+...-||+.|..++..+++.. .++.+-.|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 3455556678889999988877665441 34668999999999999999999999999999999873 4566667777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch---------------hhHHHHHHHHHhhchhhhhhhhcCCccccc
Q 000050 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ---------------PSYIKVIRDAISTSRDKERRKKKGGPILIP 2219 (2622)
Q Consensus 2155 l~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l---------------~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~ 2219 (2622)
+...+. .+.|+....+|+-.|-..-......++ -.+++.+++.-.
T Consensus 176 i~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~------------------ 235 (948)
T KOG1058|consen 176 IESFLL--TEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL------------------ 235 (948)
T ss_pred HHHHHH--hccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh------------------
Confidence 766543 456666777666443322111100111 011111111110
Q ss_pred cCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2220 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2220 g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
..|..-...+..+...|.+.++.++..|+.++-.+.. .+..+++....+ ++.+-+..+..+|.-.+.-|..+
T Consensus 236 --~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~----i~l~~kesdnnvklIvldrl~~l 307 (948)
T KOG1058|consen 236 --ANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTY----IDLLVKESDNNVKLIVLDRLSEL 307 (948)
T ss_pred --cCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHH----HHHHHhccCcchhhhhHHHHHHH
Confidence 0011122345555566666677777777666655542 235666665554 44444334556777777777766
Q ss_pred HHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcC-----C--HhHHHHHHHH
Q 000050 2300 IRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVS-----D--AGIREAILTA 2372 (2622)
Q Consensus 2300 ~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~-----d--~~vr~~~l~A 2372 (2622)
-.. -+..+..|.--+++.|+.++-+||..+..-.-.|+.. .++..++..|-..+..+ + ..-|...+++
T Consensus 308 ~~~----~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLikt 382 (948)
T KOG1058|consen 308 KAL----HEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKT 382 (948)
T ss_pred hhh----hHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 521 2234566777788899999999999887655555442 35666665555444221 1 3457777777
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2373 LKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2373 L~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
++.+..+ + +.+...+++.+.+.+.|.++.....+..-+......+|
T Consensus 383 ih~cav~----F-p~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 383 IHACAVK----F-PEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHhhc----C-hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 7766554 3 45778889999999998887655444444444555555
No 114
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.38 E-value=0.0073 Score=74.20 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=140.1
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCch
Q 000050 2233 IFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 2311 (2622)
Q Consensus 2233 ~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l 2311 (2622)
.+++++.+. ..+.++.|..-|-.+.-.-+-.--..|..+|..-++.++++..+...|..+|..|..+++.-+..+..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 334444433 3445555554333333222223346677888888899999977888999999999999998888888887
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHH
Q 000050 2312 PQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2622)
Q Consensus 2312 ~~L~~~llk~L~d~~-~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2622)
.--+..++.+-.|++ +.+|.++--|+-.+..+.|- .-+..+...+.+.|...-..+++.+..+++.......-...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 777778888888884 55555555566666665542 123333344444555555667778888888766544446678
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q 000050 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2622)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2622)
.|.+.+.+..++.+..||..+..||-.+....+.+.+.|.++.+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 88888888999999999999999999999999977888877643
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.30 E-value=1.2 Score=61.01 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh-H--HhHHHHHHhhcCCC
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDP 1549 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i--~~ilp~Ll~~l~d~ 1549 (2622)
+.-+.++.+|.++++...-...-.-..+++.|+++|+..+.++.-.+...|..++-.-.|.. + ..+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi----------- 332 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI----------- 332 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence 33456778889999876555544557899999999998899999999999988875433321 1 233
Q ss_pred ChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHH
Q 000050 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKV 1627 (2622)
Q Consensus 1550 ~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~ 1627 (2622)
+|.|.+.+...+.+.+..+..++.|++.- .+..+.+ ..++|.+..+
T Consensus 333 ----------------------------V~kL~kLl~s~~~~l~~~aLrlL~NLSfd----~~~R~~mV~~GlIPkLv~L 380 (708)
T PF05804_consen 333 ----------------------------VEKLLKLLPSENEDLVNVALRLLFNLSFD----PELRSQMVSLGLIPKLVEL 380 (708)
T ss_pred ----------------------------HHHHHHHhcCCCHHHHHHHHHHHHHhCcC----HHHHHHHHHCCCcHHHHHH
Confidence 44444444444555555666666665431 1122211 1367777788
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcC
Q 000050 1628 LVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1628 L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2622)
+.++ ..|..+...|..+...-... ...+.+|.+++.+.+..
T Consensus 381 L~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 381 LKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS 424 (708)
T ss_pred hCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC
Confidence 8764 45566666666665421111 23467888888776543
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.30 E-value=0.0073 Score=69.10 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000050 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2622)
Q Consensus 2242 ~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~ 2321 (2622)
++.+|..+..++|+++...+ ..+.||++. +...|.|. ++.||..++.+|..|....-. .+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i---k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDMI---KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCce---eehhhhhHHHHHH
Confidence 36789999999999998876 566666544 46777775 889999999999999875322 2336676778899
Q ss_pred hCCCCHHHHHHHHHHHHHHHhc-cc-ChhhHHHHHHHhhhc
Q 000050 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~ll~~Ll~~l~~ 2360 (2622)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366778888887754
No 117
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.14 E-value=0.002 Score=71.33 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.0
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHH---HHhc
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2622)
....+|+|.+|+......-+-.|..++.++.+..+.+.+.|.+++++.|+.+.|+.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 357999999999999999999999999999999566889999999999999999987 889999999999999 6788
Q ss_pred CCCccCchHHHHHHHH
Q 000050 2304 GIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~ll 2319 (2622)
|..+.||..||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999999999875
No 118
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.23 Score=65.39 Aligned_cols=195 Identities=15% Similarity=0.103 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc---chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
.-+.+|++.|..+.|......|...|..++.-.... .+....++|.|.+.++++.|+.....|+.|+.++++.+|+.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 355677777766545556666777666555322211 22233688999999999989999999999999999999976
Q ss_pred chhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
..-.+. +.+|.++..+. -.-.+|-+.+..|+..+...-+.... ..-+...+..|+==.-..++.|+.+..+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 554443 47888777654 45568888999999888776555433 1222223333321122345667777777776555
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
..-..+.-+.+|.|..+|+..+..+-+.++-|+..+++.+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 44445566788999999998888999999999999998775
No 119
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.032 Score=73.24 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=155.8
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000050 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2622)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2622)
....+.|+.+.+|.++...+..+++.-.+.. ......++..+...+.|.|+-|--+|.+++..+++.... .++|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHH
Confidence 3345678888899999999998887543222 234467888888999999999999999988888776443 44555
Q ss_pred HHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCC
Q 000050 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2622)
Q Consensus 2008 Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~ 2087 (2622)
+.+.-.+..... .+...-....|+..++...|+-+..|...++...+...++++
T Consensus 807 L~e~Y~s~k~k~--------------------------~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKL--------------------------QTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCC--------------------------CccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 544322111000 000111234677778887888899999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhccC---hhcHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHhhccccccccH----HHHHHHHH
Q 000050 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDEA----PNMISTLI 2159 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~l~~ll~~Ll~~l-~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~----~~il~~L~ 2159 (2622)
...|..++..++.++.... .+.+.++...++... .|++..+|++|+..+..+...++.++.+.+ -+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8889999999988877443 345666666666655 477899999999999999998888877643 34444444
Q ss_pred HHhc-CCChhHHHHHHHHHHHHH
Q 000050 2160 VLLS-DSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2160 ~~l~-d~d~~V~~~a~~aL~~l~ 2181 (2622)
.... +++..++-.+..++..+-
T Consensus 941 ~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHH
Confidence 4444 555666777776666553
No 120
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.10 E-value=0.00048 Score=61.70 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000050 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2622)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.+..++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999999998888889999999999999999999999999999888753
No 121
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=2.2 Score=57.21 Aligned_cols=265 Identities=17% Similarity=0.222 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCC-----hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc-
Q 000050 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2622)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2622)
-|+.-.+++-.+.+.+++.-...+...+-+.+.+.+ |..-..++..+..+++....... ..+|.+++..-
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccc
Confidence 455556666655555554444444444444454444 87777777788888765544433 33555555442
Q ss_pred ----CCCHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh
Q 000050 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2622)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~ 1583 (2622)
-.++..-..+...+|.++..+++ | ++...+|.|++.+..+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS---------------------------------- 561 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc----------------------------------
Confidence 23667777778888888776654 2 3344455554444322
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ 1657 (2622)
+.-..+...+..+|+. -+.++.||.+.++....+.+.. -.+..|....+++|-+.....++ |+..
T Consensus 562 -------k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 562 -------KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred -------hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 2222334447777874 4568999999999999988874 35678999999999999887743 4445
Q ss_pred hHHHHHHHhhhc----CC-h-HHHHHHH--HHHHHHHHHhchh-----------------------HHHhHhHHHHHhcc
Q 000050 1658 LVSWLLDALKSD----NS-N-VERSGAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2622)
Q Consensus 1658 ll~~Ll~~L~~~----~~-~-~~r~~a~--~~L~~i~~~~g~~-----------------------~l~~llp~l~~~l~ 1706 (2622)
++..++..++.- -. . ..+..+. .+++.+...+..+ .+.+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 555555444321 11 1 1222222 2344444433211 11233443333322
Q ss_pred --CCChhhHHHHHHHHHHhhhhhCcch-hhhHHhHHHHHHhhcC
Q 000050 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1707 --~~~~~vR~~al~~l~~L~~~~g~~f-~p~l~~ii~~ll~~L~ 1747 (2622)
..+..+-++++..++.=....++.| .|+++.+.+.+.....
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 1344555666655555455666778 8889998888887443
No 122
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.06 E-value=0.0032 Score=67.03 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+++|.++..+.+.++.+|..+..++..++...+.. .++ .++|.+++.+.+++.+++..++.+|+.++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36788888899999999999999999988653222 233 88999999999999999999999999999876543333
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.. ..+++.+.+.+++.+..+|+.++++|.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 458899999999999999999999999886
No 123
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.03 E-value=0.031 Score=69.52 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=134.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhh-cChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC--CCc
Q 000050 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2622)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~-~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2622)
+...++.+.......|+.++..+..+... .-++.+......++..+.+.++.. ..+.+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33445566666788999999888877743 334566677778888888888764 34667788888998888765 555
Q ss_pred cCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccc-Chhh------HHHHHHH--hhhc----------CCHhHH
Q 000050 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST-RVDP------LVGDLLS--SLQV----------SDAGIR 2366 (2622)
Q Consensus 2308 ~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~-~~~~------ll~~Ll~--~l~~----------~d~~vr 2366 (2622)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+.. ..+. .+..+.. ..+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 567788888888888886 56788999999998744322 2222 2221111 1111 125689
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 000050 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
.+++.++.-++...+...........++.+...+++.+-+||.+|+++|+-+....
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999877653223556667788888999999999999999998876543
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.3 Score=64.45 Aligned_cols=390 Identities=15% Similarity=0.206 Sum_probs=208.4
Q ss_pred HHHHhhcCCC-ChhHHHHHHHHHHHHHhhcccc-ccc-cHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhhcCccchh
Q 000050 2115 SELLKGVGDN-QASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVASVPKEVQP 2190 (2622)
Q Consensus 2115 ~~Ll~~l~d~-~~~vR~~A~~~L~~l~~~~~~~-l~~-~~~~il~~L~~~l~d-~d~~V~~~a~~aL~~l~~~~~~~~l~ 2190 (2622)
..|++.+..+ |+..+..|+.=+..+......+ ++. -+..+++.|+.++++ .+.++...|+.||..++..+|...--
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 4444555443 5555555544444333222222 222 246788999999984 46899999999999999887753200
Q ss_pred hHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000050 2191 SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2622)
Q Consensus 2191 ~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~-~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2622)
.+. ...+|+|++.|.. .--++-++++.++..|....+...++
T Consensus 250 --------------------------vV~--------~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~--- 292 (1051)
T KOG0168|consen 250 --------------------------VVD--------EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ--- 292 (1051)
T ss_pred --------------------------eec--------ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh---
Confidence 000 0134555554443 23467778888888888776633332
Q ss_pred hhhhHHHHHhhc--CCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc-cc-
Q 000050 2270 IPITGPLIRIIG--DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST- 2345 (2622)
Q Consensus 2270 ~~i~~~Li~~l~--~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~-~~- 2345 (2622)
.|.|..+|. |-|+-.+...|+.+....|.++..+--.|+-.-.+++...|+..+...-..++.|+-+++.- ++
T Consensus 293 ---AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 293 ---AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 122222222 22466778889999999999988766667777888888899988888888888899888542 21
Q ss_pred --Chhh-----HHHHHHHhhhcCC----HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCH----H----
Q 000050 2346 --RVDP-----LVGDLLSSLQVSD----AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD----H---- 2406 (2622)
Q Consensus 2346 --~~~~-----ll~~Ll~~l~~~d----~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~----~---- 2406 (2622)
++++ ++....+.+..++ ..+....+..|..+...+....-.-+...|...+...+..... .
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~ 449 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHEL 449 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccc
Confidence 2222 3333333332221 2233333333333332222111112333444444444433110 0
Q ss_pred -HH--HHHHHHHHHHHhhc---CchH----HHHHHHHHHh--------hcC-CCCchhhHhHHHHHH-------------
Q 000050 2407 -VR--VSAASILGIMSQCM---EDGQ----LADLLQELLN--------LAS-SPSWAARHGSVLVFA------------- 2454 (2622)
Q Consensus 2407 -vr--~~aa~~Lg~L~~~~---~~~~----~~~~l~~ll~--------~~~-~~~~~~r~~~~~~L~------------- 2454 (2622)
.| +..-+.+..++..+ |.+. ..-++...++ |-. ...|. ....+..
T Consensus 450 l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~---~~~~~~~ri~~q~~~~~~t~ 526 (1051)
T KOG0168|consen 450 LSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWH---TYTNIDSRIIEQINEDTGTS 526 (1051)
T ss_pred cccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCcccccccc---ccchhhhhhhhhhccCcccc
Confidence 01 01111111122222 2110 0001111111 100 00111 0111111
Q ss_pred -------------HHHhhCCccccCChhHHHHHHHHHhhhcc-CChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHH--
Q 000050 2455 -------------TFLRHNPSAISMSPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQSGPANTTVVVDIL-- 2518 (2622)
Q Consensus 2455 -------------~~l~~~~~~i~~~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l-- 2518 (2622)
.++++.|+.+ ..+...+++.|++-..+ .++.+|.-+..|+.+++-.... +.+..+|
T Consensus 527 ~~~~dkl~~~~r~~~l~nqpel~--q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~s------eli~slLk~ 598 (1051)
T KOG0168|consen 527 RKQQDKLNGSAREGLLKNQPELL--QSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNS------ELIGSLLKN 598 (1051)
T ss_pred hhhhhhcCCchhhhhhhcCHHHH--HHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCH------HHHHHHHhc
Confidence 2233333332 24556677777775544 6899999999999998655321 2333332
Q ss_pred ---H-HHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH
Q 000050 2519 ---A-SVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2519 ---~-~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l 2555 (2622)
. .+...+..++..|---|+++...+.++-|+.+.+++
T Consensus 599 ~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F 639 (1051)
T KOG0168|consen 599 TNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSF 639 (1051)
T ss_pred chHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhH
Confidence 2 333346678888888999999999999999987755
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.01 E-value=0.0022 Score=64.06 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=70.0
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
+|.++..+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46788888 899999999988888733 335778999999999999999999999998742 567
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000050 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2622)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2622)
++.|.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888764 6678999999986
No 126
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.045 Score=62.94 Aligned_cols=244 Identities=18% Similarity=0.203 Sum_probs=132.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
+..+.+.+.|.+.-.......+++++ +...-+|.+.+.+.+ +..-+|+.+.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 44444555555444444444444443 334455666655543 445667777777776651 34
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
+.+.+.+..+|+...||+.+.-|+.++-..-.-.......|.. . .||... ....-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~-S--vdPa~p--------------------~~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYI-S--VDPAPP--------------------ANLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccc-c--CCCCCc--------------------cccccHH
Confidence 4555556667777777777777776663221000000000000 0 122211 0000122
Q ss_pred HHHhhhcCCC-H-HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000050 1580 IVHRGLRERS-A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2622)
Q Consensus 1580 ~L~~~l~d~~-~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ 1657 (2622)
.+...+.|.+ + -.|..+.-.+.++. . +.-+..+.+.+.+++.-.|..++-++|.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g----~--------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIG----T--------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccC----c--------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 2222222221 1 22333433333321 1 2356677777888888999999999988754 34
Q ss_pred hHHHHHHHhhhc-CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1658 LVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1658 ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
-+|.|.+.|.+. +..-+|..++.+|+.++. ++.++.+.+.++++.+-+|+++..+|..+--.-++.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 566666666543 234588899888887654 3445566777888899999999888877655545544
No 127
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=2.6 Score=55.77 Aligned_cols=360 Identities=18% Similarity=0.216 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
..+.|+.|++....+.-...||.|+.||..+++.+...... ..+-+ +.+.+ .|-.|+..-.. ++..++....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~-li~vL~~D~~D~E~ik~---~LdTl~il~~-- 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-QGMKP-LIQVLQRDYMDPEIIKY---ALDTLLILTS-- 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-cccHH-HHHHHhhccCCHHHHHH---HHHHHHHHHh--
Confidence 35678888888877766789999999999999865433221 12222 22333 33334432222 2223332221
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVRE---AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~---aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
.|..+.|-+ .+.+....+++.+-. -+..+..++..++..+..+|..+++++.++..+-|
T Consensus 93 ----------------~dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 93 ----------------HDDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred ----------------cCcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 121122211 111222222221110 13456667788888999999999999999999888
Q ss_pred hhhhhh---hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh----hHHhHHHHHHhhcCCC-----ChhHHHHHH
Q 000050 1491 QQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP-----NDHTKYSLD 1558 (2622)
Q Consensus 1491 ~~l~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ilp~Ll~~l~d~-----~~~~r~al~ 1558 (2622)
.+.... +|.-+..++.+|.|++..+|..+.--|..+.+..++- .++.++..|+..+... .-.+.+|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 766544 5778889999999999999999999999998764321 1245556666665422 123446765
Q ss_pred HHHhc--------ccc-ccCChhhhhhHHHHHHhhh-cCCCHHHHHHHH-----HHHHHhhhhcCCCCcc------cchH
Q 000050 1559 ILLQT--------TFV-NTVDAPSLALLVPIVHRGL-RERSAETKKKAA-----QIVGNMCSLVTEPKDM------IPYI 1617 (2622)
Q Consensus 1559 ~L~~~--------~~~-~~~~~~~l~~i~p~L~~~l-~d~~~~vr~~a~-----~~l~~l~~~~~~~~~l------~~~l 1617 (2622)
.+... .|. ..---|.+..++|...-+- ....|...+.+. +++..+..- +.+... .-.-
T Consensus 235 ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 235 LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHH
Confidence 44321 111 1111123333333332221 112455544332 222222210 111110 0112
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhhhcCChHHHHHHHHH
Q 000050 1618 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQG 1681 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L~~~~g~~----------~~~----~ll~~Ll~~L~~~~~~~~r~~a~~~ 1681 (2622)
..++..|...+-++ ..+|+..++.+++.+++..... +++ .++-.++....+..+...|...+.+
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 34677777777655 4578888888888888753211 122 2333344444444556778887777
Q ss_pred HHHHHHHhchhHHHhHhHHHHHhccCC-ChhhHHHHHHHHH
Q 000050 1682 LSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFK 1721 (2622)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~vR~~al~~l~ 1721 (2622)
+-.....- .+.-..++..++....+. +..+..|.+.+.+
T Consensus 394 f~s~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 394 FRSYLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHHHHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHh
Confidence 65433211 111133444444444443 3356666555444
No 128
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.95 E-value=0.22 Score=65.20 Aligned_cols=291 Identities=12% Similarity=0.095 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHH
Q 000050 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320 (2622)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk 2320 (2622)
|+...+.-|+..|....+..+ ......+..++.+..|. +..||..|+..|..++...+ .|++.+..++.+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 578888999999999887665 22344455567777775 88899999999999987543 578999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhh---cCCHhHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHH
Q 000050 2321 CLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVYS 2394 (2622)
Q Consensus 2321 ~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~~---~~~~~~i~~ 2394 (2622)
.|+..+...+..+-.+|-.+...+|. ..+..+...+. .+|..+|+.++..|++-+...+.... .+.-..|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 99988888888999999888776543 35566666665 56788999999999988877665543 355667888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh---hcCchHHHHHHHHHHhhc------CCCCchhhHhHHHHHHHHHhhCCcccc
Q 000050 2395 VLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAIS 2465 (2622)
Q Consensus 2395 ~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~r~~~~~~L~~~l~~~~~~i~ 2465 (2622)
.+...+.|-...--.....+|+.+-. ..+......+++.+.... ...+.......+.++...+......+-
T Consensus 182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~ 261 (556)
T PF05918_consen 182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS 261 (556)
T ss_dssp HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence 88888888655555566677777665 233333344444333211 111222222244455555444333332
Q ss_pred CChhHHHHHHHHHhhhc----cCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCC------CHHHHHH
Q 000050 2466 MSPLFLSILDRLKSSLK----DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD------SSEVRRR 2535 (2622)
Q Consensus 2466 ~~~~~~~i~~~l~~~~~----~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~------s~dvr~~ 2535 (2622)
. ..++.++++..- +=....+-.-+..+..+..+++..+ ....+..+...+...+... ....-.+
T Consensus 262 S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEc 335 (556)
T PF05918_consen 262 S----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVEC 335 (556)
T ss_dssp -----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHHH
T ss_pred h----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhhH
Confidence 2 344555554433 2233455556666666666665321 1122333334443332221 1234567
Q ss_pred HHHHHHHHHhhCch
Q 000050 2536 ALSALKSVAKANPS 2549 (2622)
Q Consensus 2536 a~~~l~~~a~~~~~ 2549 (2622)
.++++..++++.|+
T Consensus 336 LL~afh~La~k~p~ 349 (556)
T PF05918_consen 336 LLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHTT-TH
T ss_pred HHHHHHHHhhhCcc
Confidence 88889999999886
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.94 E-value=0.042 Score=68.35 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=129.8
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHh--hCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC-----Chh
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----NPE 1534 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~la~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-----~~~ 1534 (2622)
..++.+.++.-.+|..++..+..+.. ..++.+......++..+.+.++-...+-+..|+++++-++-.++ +..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 34445555556667777776655443 24566667778888889999987777777788888888876655 124
Q ss_pred HHhHHHHHHhhcCCCChh--HH-HHHHHHHhccccccCChhhhhhHHHHHH---hh--hc----------CCCHHHHHHH
Q 000050 1535 IASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKKKA 1596 (2622)
Q Consensus 1535 i~~ilp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~---~~--l~----------d~~~~vr~~a 1596 (2622)
+..+.|.|.+.+.|.+.. .| .|+.+|.-..|+...+.......+..+. .. .+ ..++.+...|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 578889999998887643 44 4566665555655444433332222222 11 11 1135788899
Q ss_pred HHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000050 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1597 ~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g 1651 (2622)
...++-+...+.. ..+..++...+|.|..+|..++.+||..|..+|+-+.+...
T Consensus 207 L~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999988876543 34567778899999999999999999999999999988654
No 130
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.92 E-value=0.0052 Score=65.43 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=82.0
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhh-hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHH
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2622)
.++|.+++.+.+++|..|..++.+|+.++...+........ .++|.+.+++.|++++|+..|+++|++++...+.. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HH
Confidence 36788888889999999999999999999876554444444 88999999999999999999999999998643210 00
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhh
Q 000050 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~ 1604 (2622)
. +. -..+++.+.+.+.+.+.+++..++.++.+++
T Consensus 86 ~----------------------~~------------~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 I----------------------VL------------EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred H----------------------HH------------HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 00 0113455555566666778888888877765
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.093 Score=60.48 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=134.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC--CChhhHHhHHHHHHHHHHhhChhhHHHhHH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~~L~~li~~~~~~~l~~~l~ 1964 (2622)
+..+.+...+.+...+...+.+||++.. ..-+|.+...+.| ..|-+|..+..+||.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------P 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------h
Confidence 4444445554444455555666655432 3455666665554 467888899888887631 3
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCch--hHHHHHHHHHHhhhccccccchhh
Q 000050 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILP 2042 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~aL~~L~~il~~~~~~ilp~Lip 2042 (2622)
.+++.+.+...|+-..|++....|+.++-...+........|+.- .++... ...+..++..+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~l------------- 163 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAEL------------- 163 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHH-------------
Confidence 445666666678888888887667776643221111111111100 011000 01111122111
Q ss_pred hhhcCCCch-HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhc
Q 000050 2043 KLVHLPLSA-FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV 2121 (2622)
Q Consensus 2043 ~L~~~~~~~-~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l 2121 (2622)
.+..... .+-+++=+|... | -...+..+.+.+.+++.-.|..+..+++++-. +..++.+...|...
T Consensus 164 --ld~t~~l~~Ry~amF~LRn~-g------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~L~k~L~d~- 230 (289)
T KOG0567|consen 164 --LDETKPLFERYRAMFYLRNI-G------TEEAINALIDGLADDSALFRHEVAFVFGQLQS---PAAIPSLIKVLLDE- 230 (289)
T ss_pred --HhcchhHHHHHhhhhHhhcc-C------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc---hhhhHHHHHHHHhh-
Confidence 0000000 011222122111 1 13457788888888888889999888888753 22233333333322
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2122 ~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
.+++.||..|+.+||.++. ++.+..|...++|+++-|++.+.-+|.-.-
T Consensus 231 -~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 231 -TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3669999999999999985 577888888999999999999888887654
No 132
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.80 E-value=0.029 Score=64.18 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCC
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~ 1936 (2622)
++.||..++.+++.++...|..+.++++. +..+|.|+++.+|..|..+|..++..---.+.+.++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~----l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPN----LYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 35799999999999999888766655554 55678999999999999999999876434456677677777889999
Q ss_pred hhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHH
Q 000050 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l 1970 (2622)
+++|..|...+.++.....+..+...+.+++..+
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999877655555544444444433
No 133
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.80 E-value=0.056 Score=64.84 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-h
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-G 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~ 1455 (2622)
-++.+..+++..+++..++.++.+++..+.. + .-...+. ..++.+...+.++++.||..|..++..+....... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAF-P-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 4566777787777899999999988886532 1 1223333 46889999999999999999999998775554333 3
Q ss_pred HHhhHHHHHhhccCCCh--hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1456 VKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
++.+++.+.+...+..| ..+.+++.+|..|.-.... ...+...+|.++.++...+..+|..+.+.|..+++.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 57788888876655544 6778899999988643221 222345567777888888889999999999998763
No 134
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.76 E-value=2.9 Score=53.25 Aligned_cols=175 Identities=21% Similarity=0.178 Sum_probs=114.2
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
..+.++-.+.+++..++..||..+++++..+...+++-++ .....++..+.+.+-|..+.||..|..+|..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788999999999999999999998887654222 23445666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHH-HHHHHHHHhhhhhCcch
Q 000050 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1653 ~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~-~al~~l~~L~~~~g~~f 1731 (2622)
+ -..+...+...++++.+..+|+.+...+.. -....|.+++.+.+.+...|. -+..++..+......+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v---------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV---------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee---------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 234445666778888888888766433221 123456677777666554443 33344444433322222
Q ss_pred hhhHHhHHHHHHhhcCCCChHHHHHHHHHHHH
Q 000050 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~ 1763 (2622)
.++ +. .+--++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 333 22 45557888888999888777643
No 135
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=3.6 Score=53.94 Aligned_cols=228 Identities=17% Similarity=0.151 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHhhh-----chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1753 VRDAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~-----~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
+-+..++.+..++..++. +.++.++-.+.++.+.++-.+|.-+++++..++.... +
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-----------e-------- 118 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-----------E-------- 118 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-----------c--------
Confidence 334455566666665532 2345566778888888888999999999988753211 0
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
.+.+.++.+...+...+.|..+.||..|+-++..+-......--+....+...+ -+|+++++|..|..
T Consensus 119 ---------idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li---qnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 119 ---------IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI---QNDPSDEVRRAALS 186 (892)
T ss_pred ---------cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCCcHHHHHHHHH
Confidence 111234455566666778999999999999998886422221112222222111 25899999999887
Q ss_pred HHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHH
Q 000050 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1987 (2622)
Q Consensus 1908 ~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~ 1987 (2622)
++.- . +.-+|.+.+.-+|-+...|.-+...+..=+. .... -.+.-+..+...+.|.+..|+.++..
T Consensus 187 nI~v-----d----nsTlp~IveRarDV~~anRrlvY~r~lpkid-~r~l----si~krv~LlewgLnDRe~sVk~A~~d 252 (892)
T KOG2025|consen 187 NISV-----D----NSTLPCIVERARDVSGANRRLVYERCLPKID-LRSL----SIDKRVLLLEWGLNDREFSVKGALVD 252 (892)
T ss_pred hhcc-----C----cccchhHHHHhhhhhHHHHHHHHHHhhhhhh-hhhh----hHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 7631 2 3334445555556555666554443322111 1111 12344556677889999999988777
Q ss_pred HHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHH
Q 000050 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL 2029 (2622)
Q Consensus 1988 al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il 2029 (2622)
++..= . -.+.+.-++.+++.|.-+..++.+..++..++
T Consensus 253 ~il~~--W--l~~~dgni~ElL~~ldvsnss~vavk~lealf 290 (892)
T KOG2025|consen 253 AILSG--W--LRFSDGNILELLERLDVSNSSEVAVKALEALF 290 (892)
T ss_pred HHHHH--H--hhhccccHHHHHHHhccccchHHHHHHHHHHH
Confidence 65431 0 11234457788888876666555555555554
No 136
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.71 E-value=0.22 Score=60.21 Aligned_cols=238 Identities=16% Similarity=0.133 Sum_probs=147.6
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhcccc-ccc-cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC--ccchhhH
Q 000050 2117 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP--KEVQPSY 2192 (2622)
Q Consensus 2117 Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-l~~-~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~--~~~l~~l 2192 (2622)
|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-+...++ |......+..++..+.+... .+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 445567788888888888888887766543 332 23334444444553 34445555777777763211 1111111
Q ss_pred HHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000050 2193 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2622)
Q Consensus 2193 v~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i 2272 (2622)
+. ....... ++ +-....|..+...+..+..... ..++..-..+
T Consensus 82 ~~---~l~~~~~-------------~q--------------------~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~f 124 (262)
T PF14500_consen 82 LR---SLFQNVD-------------VQ--------------------SLPQSTRYAVYQLLDSLLENHR-EALQSMGDDF 124 (262)
T ss_pred HH---HHHHhCC-------------hh--------------------hhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHH
Confidence 11 1111110 00 1123556777777777776543 3444333444
Q ss_pred hHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh--------CCC----CHHHHHHHHHHHHHH
Q 000050 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDS----TRTVRSSAALALGKL 2340 (2622)
Q Consensus 2273 ~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L--------~d~----~~~vR~~Aa~aLg~L 2340 (2622)
+..++..+.+..++..-..++..+..++...+ +.++..++..++.-.+ +|+ .++++.+-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 44556666655578777788888888888776 3778888887776543 233 2455555555554
Q ss_pred HhcccCh-hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 000050 2341 SALSTRV-DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2622)
Q Consensus 2341 ~~~~~~~-~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2622)
..+.+ +..+|.|++.+.++...+|..+++.|..++...|.....+|...||+.|...
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 23444 3568899999988888899999999999999998776678999999988654
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.69 E-value=0.0085 Score=59.81 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.4
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000050 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2622)
Q Consensus 1578 ~p~L~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~ 1656 (2622)
+|.|.+.+ ++.++.+|..++.+++.+.. +..++.+.+.+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35677777 78899999999999884422 3578899999999999999999999998742 5
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHH
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~ 1683 (2622)
+.++.|.+.+.++....+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887776667877777664
No 138
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=1.4 Score=51.86 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhHH----HHHHHHHHHHcCCC
Q 000050 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYV----IQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~-~~~~v----~~ilp~ll~~l~D~ 1432 (2622)
...+|-.+.+..-+..+.+ ++++-|+..+..+ +..++..++.-++++.+.+... ..... ..++|.++.|.+..
T Consensus 63 cVscLERLfkakegahlap-nlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAP-NLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhccchhhch-hhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence 3444555554443333322 5777787777665 5778888999999999887732 22211 26899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHH-Hh-----hccC-CChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHH
Q 000050 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSL-LK-----GLED-KAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKL 1504 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~L-l~-----~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L 1504 (2622)
+..|-++|.+.++.+.. .+.+...++|.- ++ .|.. -+--.|.-..+++-.+..-.|.....+ -..++..+
T Consensus 141 ddeVAkAAiesikrial--fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIAL--FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred cHHHHHHHHHHHHHHHh--cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 99999999999998843 233333333321 11 1110 011123334555555555455443322 13345545
Q ss_pred hhhhcC-CCHHHHHHHHHHHHHHhhhc
Q 000050 1505 TEVLTD-THPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1505 ~~~L~D-~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
..-++. .+.-|+..+..-...++..-
T Consensus 219 eaElkGteDtLVianciElvteLaete 245 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETE 245 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHh
Confidence 444544 45678888887777776543
No 139
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.019 Score=67.43 Aligned_cols=178 Identities=20% Similarity=0.238 Sum_probs=123.8
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2622)
.+...+..|++++|..+..++..+..++.-.++.+...|..++..+++-+++....|-.+|+.+++.+.+.+.+. +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l 168 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL 168 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456678899999999999999999887788888889999999999999999999999999999999887654 23
Q ss_pred HhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCccc
Q 000050 1536 ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2622)
Q Consensus 1536 ~~ilp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2622)
+.++-.|+..-.+.+..+|+ +-++|.. .+... .-+.+++.|..++...++++|..++.+..+....++-+....
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~v---tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVA--MVNHV---TPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHH--HHhcc---ChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 44444444444444455563 3333332 11111 223467777777888889999999887766555444323344
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHH
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~ 1641 (2622)
+|...+.+.+.+-+.|.-|.+|+.|-.
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~ 270 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAARF 270 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchhH
Confidence 556667777777777777766655433
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.051 Score=67.54 Aligned_cols=225 Identities=16% Similarity=0.171 Sum_probs=141.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhc
Q 000050 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2622)
Q Consensus 1299 ~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2622)
.++.+.+-+.+.+.+.-.-.+++-.++-++ .+.-..+.++.++..-.+.+.....|+-+.+++.+.-+.. . .
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrq--e----~ 516 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQ--E----M 516 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhH--H----H
Confidence 446666666666655544444444443322 3334466777776654333333556677777776664432 1 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
.-+.+.+++.++ ++-.|.++++.++...-+-|+ . .++..++.. ..|.+++||++|..|++.++-.= .
T Consensus 517 add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----c
Confidence 234566677776 788999998877765555543 1 334444443 78999999999999988763321 2
Q ss_pred hhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---Ch
Q 000050 1458 LVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 1533 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~ 1533 (2622)
..++..++.|.+ -+..+|.+..-+||-.+.+...+. ....|-.++.|++.-||..|+-+++-+.-... ||
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 355666666654 578899999999987665433322 23344456789999999999999988865543 35
Q ss_pred hHHhHHHHHHhhcCCC
Q 000050 1534 EIASLVPTLLMGLTDP 1549 (2622)
Q Consensus 1534 ~i~~ilp~Ll~~l~d~ 1549 (2622)
.+..+...+.+.+.|.
T Consensus 659 ~v~~I~k~f~~vI~~K 674 (926)
T COG5116 659 NVKRIIKKFNRVIVDK 674 (926)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 5566666666666554
No 141
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=9 Score=55.67 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=110.8
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
.+-+..++|.|...+.+++..+|..|...+|.++......+..-.+.++...+..+.|.+.+||-.+.+....+.-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 45577889999999999999999999999999988766666677799999999999999999999999888877766442
Q ss_pred cchhhHHHHHHHHHhhchhhhhhhhcCCc---cccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhh----
Q 000050 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2622)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~---- 2259 (2622)
-. ......+.-..... |...+.+.... ..+..|.+ ..+..++....+.+.+..+.+|.+|+..+..+-++
T Consensus 334 ~~-~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 IA-KASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred hh-hHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11111111111111 11111122211 11222221 12223666667788888999999999999998874
Q ss_pred --cChhhhhhhhhhhhHHHHHhhcC
Q 000050 2260 --TSEQSLKEFVIPITGPLIRIIGD 2282 (2622)
Q Consensus 2260 --~~~~~l~p~v~~i~~~Li~~l~~ 2282 (2622)
.+...+.+-+..|-.-|++.+..
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred hccCcccccccccccchhHHhhHhh
Confidence 11123344445555555555543
No 142
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.39 E-value=5.7 Score=52.07 Aligned_cols=425 Identities=16% Similarity=0.143 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhhHHHHH
Q 000050 1393 AKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLL 1464 (2622)
Q Consensus 1393 ~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll 1464 (2622)
.....+...+++.++.+-.+.+...+. ..+|.++..+.+++ ..+++++..+++.+.+.-+.. ..+.+++.+.
T Consensus 67 ~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s 146 (678)
T KOG1293|consen 67 TELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFS 146 (678)
T ss_pred hhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 334445566677777666655555554 56789999999988 899999999999998854222 2355555544
Q ss_pred hhcc-CCChhhHHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-hH-HhHHH
Q 000050 1465 KGLE-DKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI-ASLVP 1540 (2622)
Q Consensus 1465 ~~L~-~~~w~~r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i-~~ilp 1540 (2622)
..+. +-+...+.. +.. .+.+...+ ++..-+-..+...+.-++...+..+|.+|..++..-...+.|+ +. ..++.
T Consensus 147 ~l~s~~lk~~~~l~-~~~-~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 147 LLYSIELKYISRLD-VSR-AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred HHHhhhhhhhhhhh-hhh-hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 4333 111111110 000 11111111 1222122233334333444457889999999888644444332 21 11111
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-----
Q 000050 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP----- 1615 (2622)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~----- 1615 (2622)
. +.|..-..| -.+.+...++....|..++.++..++.. +..++-.+
T Consensus 225 ~----L~d~~v~~r------------------------~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~ 275 (678)
T KOG1293|consen 225 L----LKDKGVNIR------------------------CVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIF 275 (678)
T ss_pred H----Hhccccchh------------------------hhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceee
Confidence 1 111110000 0223344555556666677777776654 21112111
Q ss_pred --hHhhhH--HHHHHHhcCCCHHHHHHHHH--HH-HHHHhhhCCC-C---chhhHHHHHHHh---hhcCChHHHHHHHHH
Q 000050 1616 --YIGLLL--PEVKKVLVDPIPEVRSVAAR--AI-GSLIRGMGEE-N---FPDLVSWLLDAL---KSDNSNVERSGAAQG 1681 (2622)
Q Consensus 1616 --~l~~ll--~~L~~~L~d~~~~vR~~a~~--aL-~~L~~~~g~~-~---~~~ll~~Ll~~L---~~~~~~~~r~~a~~~ 1681 (2622)
..+..+ -.....+.+|.+..-..+.. |+ ..++...... + .....+.++... +... ...|.-++..
T Consensus 276 ~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~~~i~l~e 354 (678)
T KOG1293|consen 276 FDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKYRLILLNE 354 (678)
T ss_pred ccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhhhHHHhhh
Confidence 111111 11222333443322111111 11 1122222211 1 112233333222 1111 1122211111
Q ss_pred ---HHHHHHHhchhHHHhHh-----HHHHHhccCCChhhHHHHHHHHHHhhhhh---CcchhhhHHhHHHHHHhhcCCCC
Q 000050 1682 ---LSEVLAALGTVYFEHIL-----PDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADEN 1750 (2622)
Q Consensus 1682 ---L~~i~~~~g~~~l~~ll-----p~l~~~l~~~~~~vR~~al~~l~~L~~~~---g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2622)
....+...|...-+++. ..++......+...+.+++.++..+.+.. ... +--.++..++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcc
Confidence 11111122211111111 11222222346677888888877766543 232 223457888888889999
Q ss_pred hHHHHHHHHHHHHHHHHhhhch---h-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccH
Q 000050 1751 ESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~~---i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~ 1826 (2622)
..|..+++.++..++-.|++-. + .-.+..++..+.+.+..+|..++..+..+.+.. |+.
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~--- 495 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE--- 495 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH---
Confidence 8999999999999888776531 1 225566777888888999999999988887641 110
Q ss_pred HHHHHHHHHHhChhhHHHHHH-HHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1827 ~~~~~~l~~~Lg~e~~~~il~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
....+.. ++-. .+....+|+.+.|.+.+.+++..+.-+..+.
T Consensus 496 --~k~~~~~--------ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 496 --EKFQLLA--------KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHHHHHH--------HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 0011111 1111 1223358999999999999999998776544
No 143
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=7.4 Score=53.28 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=68.8
Q ss_pred HhccCCCHHHHHHHHHHHHHHH---hhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhh
Q 000050 1851 MVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2622)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~---~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~ 1923 (2622)
..+++.+..+|-.|++++..-. ...+..+-|.+...+|.++.++...++-.-..|+.|+..+....|+- ++..
T Consensus 810 ~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~d 889 (1014)
T KOG4524|consen 810 HLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLED 889 (1014)
T ss_pred HHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3468889999999999987533 34567788889999999999999999999999999999999988875 4678
Q ss_pred HHHHHhhhcCC
Q 000050 1924 IIPILSRGLKD 1934 (2622)
Q Consensus 1924 llp~L~~~L~d 1934 (2622)
++|.+...+.+
T Consensus 890 vlP~l~~~~~~ 900 (1014)
T KOG4524|consen 890 VLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHH
Confidence 88888765544
No 144
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=6.6 Score=52.29 Aligned_cols=303 Identities=16% Similarity=0.134 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhccc------hhhhH
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLPSI 1924 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-----s~~~~~R-~~A~~~L~~lv~~~~~~------~l~~l 1924 (2622)
...+|-+|-.....+..+.+..+.+++-..+....++.. +-+.-.+ -++..+.|.-.-.+.+. ....+
T Consensus 410 ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~l 489 (978)
T KOG1993|consen 410 EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEAL 489 (978)
T ss_pred eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhh
Confidence 345788888888888776665444433333322233221 1111122 22233333222222211 23445
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHh--Chhhh
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKSA--GMQAI 2001 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-d~~VR~~A~~al~~l~~~~--g~~~~ 2001 (2622)
+|-+.. -.+...-.|..++..+|..+..-.+. +.-+.+...+...+.|. |.-||-.++.++..+.+.. .++.+
T Consensus 490 lpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~~---e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsF 565 (978)
T KOG1993|consen 490 LPELAN-DHGNSRIIRRRVAWILGQWVSVQQKL---ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSF 565 (978)
T ss_pred CHHhhh-cccchhHHHHHHHHHHhhhhheechH---hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhh
Confidence 555541 11223456788888888876633322 23345566677788887 7889999999999887753 34555
Q ss_pred hhhHHHHHHhc-------ccCCchhHHHHHHHHHHhhhccccccch------hhhhhcCCCch--HHH---HHHHHHHHH
Q 000050 2002 DEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHI------LPKLVHLPLSA--FNA---HALGALAEV 2063 (2622)
Q Consensus 2002 ~~ilp~Ll~~L-------~~~~~~~~aL~~L~~il~~~~~~ilp~L------ip~L~~~~~~~--~~~---~aL~sLa~~ 2063 (2622)
-+++|.+...+ +.-+++-..|..+..++...+..+-|.. +|.|=+..... -++ .++..+...
T Consensus 566 lp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 566 LPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNA 645 (978)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 55555554433 2234455677777777766555555543 33332221111 122 344455556
Q ss_pred hCCChhhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHhhhccCh--hcHHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000050 2064 AGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE--EGVESLVSELLKGVGDNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2064 ~g~~l~~~l~~il~~Ll~~l~~~---~~~vr~~a~~al~~l~~~~~~--~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~ 2138 (2622)
.|..-.+..+-++|.+--...-+ +.-.-+.+.+-+...+.+... +.+-.+.|.+...+.-.....| .+...+..
T Consensus 646 lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~s 724 (978)
T KOG1993|consen 646 LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISS 724 (978)
T ss_pred hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 67654444444445444333222 223456666777777665532 4455666666666543323332 23333332
Q ss_pred H-HhhccccccccHHHHHHHHHHHhcC
Q 000050 2139 F-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2622)
Q Consensus 2139 l-~~~~~~~l~~~~~~il~~L~~~l~d 2164 (2622)
. .-..+.-+..|...+...+...++|
T Consensus 725 YilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 725 YILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222333455666777777776665
No 145
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.33 E-value=0.37 Score=60.30 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCCccC--chHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHhccc-ChhhHHHHHHHhhhcCCHhHHHHH
Q 000050 2294 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREAI 2369 (2622)
Q Consensus 2294 ~~L~~L~~~~~~~l~p--~l~~L~~~ll-k~L~d~~~~vR~~Aa~aLg~L~~~~~-~~~~ll~~Ll~~l~~~d~~vr~~~ 2369 (2622)
.....++......+.+ .+..+...++ .++++++..+|..|.+|||..+-++. ....+++.+...++..+..+|..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344455544444444 3336555544 78999999999999999999877654 355678888888866689999999
Q ss_pred HHHHHHHHhhcCCCCChH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000050 2370 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
++++-.++...|...-.. ....+...+.+.+.+.++.++..+++.+.+|...
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999998888654322 2457888888899888999999999999997644
No 146
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.25 E-value=7.9 Score=52.25 Aligned_cols=138 Identities=13% Similarity=0.158 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHh-CCChhhhHhhhHHHHHHhcCC-CCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHH
Q 000050 2053 NAHALGALAEVA-GPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR 2130 (2622)
Q Consensus 2053 ~~~aL~sLa~~~-g~~l~~~l~~il~~Ll~~l~~-~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~ 2130 (2622)
++.++-.+++.+ .+ .......+|.+++.|.. +...+|....-+++.++.++. ..++..+|.+...++|+++-+|.
T Consensus 948 ra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred HHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHH
Confidence 445555555532 11 12334578899998854 446777776666665554331 23567889999999999999999
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcc-chhhHHHHH
Q 000050 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVI 2196 (2622)
Q Consensus 2131 ~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~-~l~~lv~~l 2196 (2622)
.++..|..+.+. ++..+-+.++-.++..+-|.++++|.-|-..++.+...-... ....+++.+
T Consensus 1025 qt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1025 QTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 999999988763 455566666655555566889999999999999988765443 333444443
No 147
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=7.1 Score=51.38 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---hhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch
Q 000050 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
.+++..++-+++.+...++..||...+..+..++. ..++.-+..+...++..+.+....+|..|+.+|..+-....+
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 34677888999999999999999999999998887 334445688888888899999999999999999877532111
Q ss_pred hhhhhhhhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHH-HHHHhccccccC
Q 000050 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTV 1569 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al-~~L~~~~~~~~~ 1569 (2622)
. . -.++..+...+ +|++++||.+|..++..=. ...|.+.....|-+...|.++ ..+.. +. ..
T Consensus 160 e-e---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 160 E-E---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred C-c---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 1 0 12333334444 6899999999987664322 234556666566665555322 22111 11 11
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH-hhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~ 1645 (2622)
..-+...-+-.+..|+.|++..+|.++.+.+.. ..+.. + ..++..|..+=.+...+|+-.+.+++=.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 112333455667789999999999988877643 22211 1 1244444444345566888888777766
No 148
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.24 Score=62.00 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000050 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLGRLF 1414 (2622)
Q Consensus 1336 ~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~-l~~~~~~~~R~~al~al~~La~~~~~~~ 1414 (2622)
+++.+.++..|..++|...|.+.+..++...-+.|... ++..+... +.|. |..+|.+|+.++|-+|-.-+
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~-----vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~--- 584 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG-----VVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDR--- 584 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch-----hHhhhheeecccC-chHHHHHHHHheeeeEecCc---
Confidence 34556667777777788889988888876666555433 33444444 4555 78899999999888773322
Q ss_pred hhHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1415 EPYVIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
..++..++.+.+ .++.||....-+++..+.......-..++..| +.+..-.+|++|+-+++.+.-.+..++
T Consensus 585 -----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L---~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEAL---MYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHH---hhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 345555556654 57899999888888877665554333333333 346667899999999998887777778
Q ss_pred hhhhhhhHHHHhhhhcCCCH
Q 000050 1494 SQCLPKIVPKLTEVLTDTHP 1513 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~ 1513 (2622)
.+....|...+.+++.|.|.
T Consensus 657 np~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ChhHHHHHHHHHHHHhhhhH
Confidence 88888888888888888664
No 149
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.02 E-value=4.6 Score=54.35 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=64.3
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~ 1688 (2622)
+.+...++..++.+...+.+++..||....+.+..+-..+... .+.-=+..|++..++.. +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4567778888888888899999999999999999998887753 22222445666666655 444554433333322333
Q ss_pred hchhHHHhHhHHHHHhccC
Q 000050 1689 LGTVYFEHILPDIIRNCSH 1707 (2622)
Q Consensus 1689 ~g~~~l~~llp~l~~~l~~ 1707 (2622)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 3344446788888888764
No 150
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.02 E-value=0.99 Score=54.75 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=127.9
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcc-hhh-hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH--hhhchhhhhHHHH
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQ-FQN-YLQQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSLPLLLPAV 1780 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~-f~p-~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~--~~~~~i~~llp~l 1780 (2622)
+.+.++.+|..++.+++.+...++.. +.. .+.-++.-....+.| ...+..+ +.++..+++. ++......++..+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHHHHHHH
Confidence 34455566666666666555555532 111 233344445555533 2333333 6666665532 2233333344444
Q ss_pred hhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCH
Q 000050 1781 EDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2622)
Q Consensus 1781 ~~~l~d--~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~ 1858 (2622)
.+...- -....|..+.+++..++.+.. .. ...+|.++...++.. +..+.++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-----------------------~~-l~~~~~~fv~~~i~~---~~gEkDP 138 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHR-----------------------EA-LQSMGDDFVYGFIQL---IDGEKDP 138 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhH-----------------------HH-HHhchhHHHHHHHHH---hccCCCH
Confidence 332221 223478888888888875421 01 122333332222221 1233344
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhh
Q 000050 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~--------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~ 1930 (2622)
.---.+.+.+..+....+ +.++.+.++..+.-++- ++..-.|..-...|..+.. ..+.+.+..+|.+.+
T Consensus 139 RnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 139 RNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLE 215 (262)
T ss_pred HHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHH
Confidence 444455556665655544 23444454444433321 2222234333344433332 123356889999999
Q ss_pred hcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHH
Q 000050 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2622)
Q Consensus 1931 ~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2622)
.|.+..+.++..++..|...+...+...+.+|+..+...+..
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 151
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.92 E-value=0.31 Score=62.06 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~-----~~~~~~~R~~al~al~~La~~~~~----------- 1412 (2622)
++....|++|...+..+++..+..... .++.++.+.++ ...||+.+++|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 333466777888888888776644432 34455555554 345899999999999999964321
Q ss_pred -cchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHH
Q 000050 1413 -LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2622)
Q Consensus 1413 -~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2622)
.+..++. +++|-+- .-.+..+-+|-.|...+...-..+++.....++|.++..|.+++.-++.-|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 1333333 4566655 334567889999999998888899998899999999999999887666555443
No 152
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.90 E-value=2.8 Score=55.45 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
...+.-+++-|......++. .-+..+..++..|.+.+..+|..++..|..+|..-++ |+..+...+.+.|.-++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcccH
Confidence 44566677777766655432 2355677888899999999999998888888876544 788899999999998777
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
.....+-.++..++..-+...+..++..+... ...+..+|.-++..+..-+..
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhh
Confidence 77777777887777766655555555555421 123456888877777655443
No 153
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.80 E-value=0.013 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
++|.+.++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.75 E-value=9.4 Score=48.96 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------ccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1877 KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL------GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1877 ~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~------~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
..|...+-.++..++.+=+.+.-..| ..+.+..++... |..+...++..+.+++.+++..||..+|+.|+.+
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~ 118 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALL 118 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 34555555556655555443333333 344555555522 2335667777788889999999999999999988
Q ss_pred HHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHh
Q 000050 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2622)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~ 2030 (2622)
+...++ .-......++..+.+-+-|..+.||-.|..++..+++..+.+. ..+...|+..++.+..++..-.++..+.
T Consensus 119 ~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS~EVRr~allni~- 195 (885)
T COG5218 119 SDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPSDEVRRLALLNIS- 195 (885)
T ss_pred HHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcHHHHHHHHHHHee-
Confidence 776654 2223446677777777789999999999999999886555422 2344455666665544433333333322
Q ss_pred hhccccccchhhhhhcCCCch---HHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000050 2031 VRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAA 2098 (2622)
Q Consensus 2031 ~~~~~ilp~Lip~L~~~~~~~---~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al 2098 (2622)
..+...|.++.+-.+..... +-++.+-.++.....+..++.- .+--.+.+.+..++.++..++
T Consensus 196 -vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~----l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 196 -VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL----LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred -eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh----hhhhcchhhhhhHHHHHHHHH
Confidence 24455666666555433211 2234444444322223333322 122235555566666555444
No 155
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.73 E-value=9.8 Score=50.06 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=80.1
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc--
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-- 2146 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~-- 2146 (2622)
..+..++++.+.+++..+...+..++..++..+++-. -...+..+.+.+.+.++.+|..+.+.+..+.=+....
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 4566777777788888899999999888887775421 3356778888889999999999999998874333222
Q ss_pred ccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000050 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2147 l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~ 2182 (2622)
+..+..--.+.+..+.+|+|..|++.++..|.+++-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 222222223445556789999999999999888864
No 156
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.70 E-value=0.29 Score=58.78 Aligned_cols=193 Identities=15% Similarity=0.099 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh-CccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~--~~ 1413 (2622)
+-++.++..|...+|...+..+..+++..+... ..+.+...+.++.+...+.++ ++.+|..|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 455677777776666677777777777654321 122233346677788888887 79999999999888875443 23
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2622)
++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|.+++-.+|..++.+|..++.... .
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~-~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD-M 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-H
Confidence 556666666655443 2355788787777777632111 12346778888888888888899999999999887522 1
Q ss_pred hhhhh-hhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhhhcCCh
Q 000050 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2622)
Q Consensus 1493 l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2622)
....+ .+..+.++.+++.. +.++--.+..-+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 23455666666653 5677777788788887776643
No 157
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.60 E-value=9.3 Score=51.51 Aligned_cols=393 Identities=19% Similarity=0.246 Sum_probs=190.1
Q ss_pred chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-hhHHhHHHHHHhhcCCCC--hhHH-HHHHHHHhccc
Q 000050 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2622)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ilp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2622)
.+.+...+...+|.++.-+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ . .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4567777888888888889999999999999999999888875 666544566777776666 3344 232111 1 12
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCH---HHHHHHHHHHHHhhhhcCCCCcc---cchHhhhHHHHHHHhcCCCHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSA---ETKKKAAQIVGNMCSLVTEPKDM---IPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~l---~~~l~~ll~~L~~~L~d~~~~vR~~a 1639 (2622)
....+...-..++|.+.+++..... .........+.-+++.....+.- .+.....-. ...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~--~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRD--SLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHH--HHhhcc--hHHHHHc
Confidence 2344555566788888888864332 12122222222233332221110 000000000 000001 0000000
Q ss_pred HHHHHHHH-----h---hhC--CCCchhhHHHHHHHhhhcC-ChHHHHHHH---HHHHHHHHHhchhHHHhHhHHHHHhc
Q 000050 1640 ARAIGSLI-----R---GMG--EENFPDLVSWLLDALKSDN-SNVERSGAA---QGLSEVLAALGTVYFEHILPDIIRNC 1705 (2622)
Q Consensus 1640 ~~aL~~L~-----~---~~g--~~~~~~ll~~Ll~~L~~~~-~~~~r~~a~---~~L~~i~~~~g~~~l~~llp~l~~~l 1705 (2622)
+.-.+.+. . .-| ....+.+-..-.+...... ....+.... .++-+++...... -.+.++.++-..
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~-d~~~~~~~liAs 246 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFP-DEERFPPLLIAS 246 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCC-cHhHHhheeeEE
Confidence 00001100 0 000 0001111110001111110 000111111 1111222111110 123444444445
Q ss_pred cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHh-hcC------CCChHHHHHHHHHHHHHHHH-hhhchhhhhH
Q 000050 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA------DENESVRDAALGAGHVLVEH-YATTSLPLLL 1777 (2622)
Q Consensus 1706 ~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~-~L~------d~~~~VR~~al~al~~lv~~-~~~~~i~~ll 1777 (2622)
.+++..|...+-..+..+...+.+ .+.+..++...+. ++. --...+|...+.-+ .+. .+....+..+
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~Aa~~~~~~~ 321 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVIAATSFPNIL 321 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHHHHhCCccHH
Confidence 667777877777777777655443 1233333443331 100 11233444433333 222 1222344566
Q ss_pred HHHhhccCCC--chHHHHHHHHHH---HHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHH--
Q 000050 1778 PAVEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-- 1850 (2622)
Q Consensus 1778 p~l~~~l~d~--~~rvR~~a~~ll---~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~-- 1850 (2622)
.-+..++.+. +.|.|..+++.+ ...+.+++ ..+++.++.--+.+.++.+-
T Consensus 322 ~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~~i~~~g~p~~~~~ 378 (501)
T PF13001_consen 322 QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRPVILSQGWPLIQDS 378 (501)
T ss_pred HHHhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHHHHHhcCccccccc
Confidence 6667788777 778888888877 44433321 11222222211112222220
Q ss_pred --HhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000050 1851 --MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2622)
Q Consensus 1851 --~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~ 1918 (2622)
......+...|..+.+++|.++...|..+..-+ .++..+++.+.+...++|...-.||+.+......
T Consensus 379 ~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 379 SSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 001234678999999999999999987663332 3556667777888999999999999999877643
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.51 E-value=0.62 Score=58.38 Aligned_cols=151 Identities=21% Similarity=0.176 Sum_probs=98.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh----
Q 000050 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL---- 2469 (2622)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~---- 2469 (2622)
.++...+.+.+..+|+.+.+|+|-.+.... +...+.+.-+......++...+..+..++.-++..++...+....
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 445567788899999999999999887665 355555555544443445555666666777666665555443222
Q ss_pred ---HHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcC-CCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2470 ---FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2470 ---~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
...+.+.+.+.+.+.++.++..+++++.+++....-.+ | ..+..++-.....-..++...|+.--+-+...+.
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~---~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPP---KVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS 185 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence 35688888999999999999999999999988864322 2 2333333333334334445666666666666665
Q ss_pred hCc
Q 000050 2546 ANP 2548 (2622)
Q Consensus 2546 ~~~ 2548 (2622)
.++
T Consensus 186 s~~ 188 (298)
T PF12719_consen 186 SSP 188 (298)
T ss_pred CCH
Confidence 554
No 159
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=23 Score=51.74 Aligned_cols=236 Identities=16% Similarity=0.165 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhH
Q 000050 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 1475 (2622)
Q Consensus 1396 R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r 1475 (2622)
+.+|...-..+.+.+++..++.+.+.+...+..-......++..-.+.+..+. ...++.+-.++|.|...|.+++-.+|
T Consensus 198 ~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~R 276 (1266)
T KOG1525|consen 198 IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVR 276 (1266)
T ss_pred cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHH
Confidence 33444444455555665566666554443322211111222222222222221 22344567788999999999999999
Q ss_pred HHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh---HHHHHHhhcCCCChh
Q 000050 1476 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS---LVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1476 ~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~---ilp~Ll~~l~d~~~~ 1552 (2622)
..|+.++|.|......++....+.++...++-+.|.++.||-++++...++.-. +|.+.. +.-.+.....|++..
T Consensus 277 l~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~r 354 (1266)
T KOG1525|consen 277 LKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVR 354 (1266)
T ss_pred HHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhh
Confidence 999999999988766677778899999999999999999999999988877543 554422 222233344455444
Q ss_pred HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh-c----CCCCcccchHhhhHHHHHHH
Q 000050 1553 TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKV 1627 (2622)
Q Consensus 1553 ~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~-~----~~~~~l~~~l~~ll~~L~~~ 1627 (2622)
+|. ..++...-+....-...+.++..+...+.|+-|+||..|..-+..+... + ...+...+-...+-..+..+
T Consensus 355 ir~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~ 432 (1266)
T KOG1525|consen 355 VRT--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHL 432 (1266)
T ss_pred hee--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhh
Confidence 441 0000000000000011122566667778899999999999998887763 1 11133333333344444444
Q ss_pred hcCCCHHHH
Q 000050 1628 LVDPIPEVR 1636 (2622)
Q Consensus 1628 L~d~~~~vR 1636 (2622)
+-..+.+.|
T Consensus 433 ~y~~~~~~r 441 (1266)
T KOG1525|consen 433 YYENDLDDR 441 (1266)
T ss_pred HhhccccHH
Confidence 444444555
No 160
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.49 E-value=2.6 Score=55.16 Aligned_cols=298 Identities=16% Similarity=0.251 Sum_probs=138.4
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhh----hcCChHHHHHHHHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLS 1683 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~----~~~~~~~r~~a~~~L~ 1683 (2622)
.++.|+...++..|...+..+...--+...+|+-.+....+++ +...+++.|...+. +..++.--...+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5788999999999999887543222345667777776666655 34455555555442 3333323345677777
Q ss_pred HHHHHhchh------HH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHH
Q 000050 1684 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756 (2622)
Q Consensus 1684 ~i~~~~g~~------~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~ 1756 (2622)
.+++..... .+ +.++|.+...++..- .+|.||+=+++..++..-. ...
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-------------------~EF~PYvfQIla~Lle~~~--~~~---- 152 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDV-------------------QEFIPYVFQILAQLLELRP--SSP---- 152 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT--------------------TTTHHHHHHHHHHHHHHSS----S----
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHcCC--CCC----
Confidence 777654432 12 233444444333332 3455555555554444432 000
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHH---HHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHH
Q 000050 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI---RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2622)
Q Consensus 1757 al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rv---R~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l 1833 (2622)
.++ ....++|.+... .-|.- --+.+.++..++.+-+..- . ....+
T Consensus 153 -----------~p~-~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i----~-------------~~~~l 200 (435)
T PF03378_consen 153 -----------LPD-AYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFI----V-------------ANNQL 200 (435)
T ss_dssp -------------T-TTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-C
T ss_pred -----------CcH-HHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhh----c-------------chhhH
Confidence 000 111122322211 12221 1233345555554422110 0 00011
Q ss_pred HHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 000050 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE 1911 (2622)
Q Consensus 1834 ~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~ 1911 (2622)
...+| ++..+...... -..+.+.+..++.+.|. .+.+|++.++..++.++.+ +...-...-+..++-
T Consensus 201 ~~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 201 EPILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp HHHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 11222 12222211111 14578899999998885 6899999999999999984 333333333334444
Q ss_pred HHHHhccch--------hhhHHHHHh-----hhcCC-CChhhHHhHHHHHHHHHHhhCh--hhHHHhHHhHHHHHHHHhc
Q 000050 1912 LVRKLGERV--------LPSIIPILS-----RGLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1912 lv~~~~~~~--------l~~llp~L~-----~~L~d-~~~~vR~~a~~~L~~li~~~~~--~~l~~~l~~ll~~l~~~L~ 1975 (2622)
++-+.|... .+.+...+. ..++. ..+.-|.-++.++..++..... ......+..+++.+...+.
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 443334321 121111111 11221 2345577777888887754321 1122345555556655554
Q ss_pred C
Q 000050 1976 D 1976 (2622)
Q Consensus 1976 d 1976 (2622)
.
T Consensus 350 ~ 350 (435)
T PF03378_consen 350 R 350 (435)
T ss_dssp T
T ss_pred C
Confidence 3
No 161
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.44 E-value=4.5 Score=61.03 Aligned_cols=299 Identities=12% Similarity=0.094 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccCchHHHHHH----HHHHhCCCCHHHHHHHHHHHHHHHh-ccc-------Ch-hhHHHHH
Q 000050 2288 VKSAILSTLSIIIRKGGIALKPFLPQLQTT----FIKCLQDSTRTVRSSAALALGKLSA-LST-------RV-DPLVGDL 2354 (2622)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~l~~L~~~----llk~L~d~~~~vR~~Aa~aLg~L~~-~~~-------~~-~~ll~~L 2354 (2622)
-|...+.-|.+++..--..++-..+.++.. |.+.-.+++..++.-|...|..++. +-. ++ ..++..+
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 356666666666553333344344554444 4444445577888888888888733 211 11 2456666
Q ss_pred HHhhh-cCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh----cC---chH
Q 000050 2355 LSSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQ 2426 (2622)
Q Consensus 2355 l~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~ 2426 (2622)
...++ ..+.++|+.+++++..++...+.++. .-.+.|+..+.....++++.+-..+-+++..+... ++ .+.
T Consensus 1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 65553 45679999999999999988777662 23455666665555666777666677766655432 22 133
Q ss_pred HHHHHHHHHhhcCCCC-chhhHhHHHHHHHH---HhhCC------------------------cc---ccC----ChhHH
Q 000050 2427 LADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---ISM----SPLFL 2471 (2622)
Q Consensus 2427 ~~~~l~~ll~~~~~~~-~~~r~~~~~~L~~~---l~~~~------------------------~~---i~~----~~~~~ 2471 (2622)
+..++.-+.+...... ...-..++..|..+ +...+ +. +.. ..+|-
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 4444433322211111 10111122222211 00000 00 000 13566
Q ss_pred HHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhc-CCCCchhhHh-HHHHHHhhcC------------------CCC--
Q 000050 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS-- 2529 (2622)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~l~~~l~------------------d~s-- 2529 (2622)
.++..+.+.+.+++++||..|+..|-.++...+.. .++++..+.. +|-+++..++ +.+
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence 67777777788899999999999999988777654 4434333222 3333332211 001
Q ss_pred ------HHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhcc
Q 000050 2530 ------SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 2587 (2622)
Q Consensus 2530 ------~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~ 2587 (2622)
.+.-..|+..+..+-.+..+.+.+.|+.++..+..|+...|..+=..+-.|+..+..-
T Consensus 1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 1445556666666655666778889999999999999999998877777777776543
No 162
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.39 E-value=0.38 Score=61.35 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhcc-----c---------
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R--------- 1919 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~-----~--------- 1919 (2622)
...-|.+|.+.+..++...++.+.+.+...+..++.... +.++..+..|+..++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356899999999999988777666666555555544322 45788889999999988765421 1
Q ss_pred --hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHH
Q 000050 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2622)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al 1989 (2622)
+...++|-|. .-.+..|-+|..||..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234555555 2224567788888887776533333 346688999999999999999999988764
No 163
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.28 E-value=0.22 Score=65.24 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=135.7
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
....++|.|.+.+...+..+|....+-+..+...++. ..+-+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4556899999999999999999998888888776643 224567899999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHh-HHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1653 ~~~-~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ll-p~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
..+ .+++..+. .++.|+....|.....+++.+...+....-..++ -...+.+.++-..-|.++...+......+..
T Consensus 403 ~~Ln~Ellr~~a-r~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLA-RLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHH-hhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 743 45555553 3444555557777777777776654333222222 2333445666667777777777666554443
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
...-.+|+|.+....-|++..||+.|..+++.+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 233456888888888899999999999888876543
No 164
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.20 E-value=0.19 Score=65.86 Aligned_cols=243 Identities=18% Similarity=0.251 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHhchhHH-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCC
Q 000050 1672 NVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~~g~~~l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~ 1750 (2622)
..+|...++.+.+.+..+..+.. ..++|.++..+.-.+ ... .++..+-.+...+.. .+|-..++|.+++.++-.+
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~~-~~ltpl~k~~k~ld~--~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AAS-DFLTPLFKLGKDLDE--EEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cch-hhhhHHHHhhhhccc--cccccchhhhHHHHhcCcc
Confidence 44677788888887777777654 566777776654333 111 111122222222222 3477779999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHH
Q 000050 1751 ESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2622)
Q Consensus 1751 ~~VR~~al~al~~lv~~~~~~~i-~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~ 1829 (2622)
..||..-++-+..++..+.+..+ +.++|.+..|+.|.+.-+|...+..+..+...++.
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~--------------------- 402 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK--------------------- 402 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---------------------
Confidence 99999988888888888876654 56999999999999999999888877776544320
Q ss_pred HHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2622)
Q Consensus 1830 ~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L 1909 (2622)
.+++ .+++..+.....|....+|.....+++.+........+. +.+.......+.|+-..-|..+...+
T Consensus 403 -----~~Ln----~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l 471 (690)
T KOG1243|consen 403 -----RNLN----GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLAL 471 (690)
T ss_pred -----hhhc----HHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHH
Confidence 1122 234444555556888888888888888777653221111 11222233346677777788888777
Q ss_pred HHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHH
Q 000050 1910 GELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1910 ~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~l 1950 (2622)
....+..... +...++|.+....-|++..+|..+..++...
T Consensus 472 ~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 472 AATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 6665554433 5567788787777888888888877666554
No 165
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.18 E-value=0.95 Score=63.47 Aligned_cols=236 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhhCccchhhhcH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~-~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i 1379 (2622)
+++.+...+.++...++......+..+++.++.-..+-+..+.+.+... .....|..-..+|... |. ..-
T Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT-----~~a 396 (618)
T PF01347_consen 326 LLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQA----GT-----NPA 396 (618)
T ss_dssp HHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-----S-----HHH
T ss_pred HHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHc----CC-----HHH
Confidence 4444444443333333333333344555555443344455556655443 1223344333333322 21 134
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----- 1454 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----- 1454 (2622)
+.++.+.+.+++-. .. .|..++..+.......-..++..+.+.+-......++.+|.+|+-+++.+....-..
T Consensus 397 v~~i~~~I~~~~~~-~~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DD-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S--HH-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCC-HH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 45566666654322 22 233444454443322223334333333222222346789999988887776632211
Q ss_pred --------hHHhhHHHHHhhcc----CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCC---CHHHHHHH
Q 000050 1455 --------GVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAG 1519 (2622)
Q Consensus 1455 --------~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~aA 1519 (2622)
..+.+++.+.+.+. ..+-..+..++.+||++.. +..++.+...+.+. ...+|.+|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~A 544 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAA 544 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHH
Confidence 22455565555544 4455677888889988753 55667777777665 67899999
Q ss_pred HHHHHHHhhhcCChhHHhHHHHHHhhcCCCC--hhHH-HHHHHHH
Q 000050 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILL 1561 (2622)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~--~~~r-~al~~L~ 1561 (2622)
++||..++...++ .+.+.++....|+. ..+| .|+..+.
T Consensus 545 i~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 545 IQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 9999988765543 33344444443433 3466 4555554
No 166
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.09 E-value=6.1 Score=59.72 Aligned_cols=328 Identities=12% Similarity=0.019 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHh
Q 000050 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISS----LASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILS 1929 (2622)
Q Consensus 1861 R~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~----L~s~~~~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~ 1929 (2622)
|--++.-+..++......++-.++.++..+... -.+++..++..|+..|..+..+.-+. +...++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 334444444454433333333333433333332 23556778888888888877655322 2345666666
Q ss_pred hhcC-CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhh
Q 000050 1930 RGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAI 2001 (2622)
Q Consensus 1930 ~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-------~~~ 2001 (2622)
..+. ..+.++|..++.++..++...+ ..+..-++.+...+.....+.++.+-..|.+.+..++..+-. ..+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 6554 4578999999999999988765 356667888999988888888888888888888777654222 223
Q ss_pred hhhHHHHHHhcccCC---chhHHHHHHHHHHhhhccccccchhh-h-hhcCCCchH-HHHHHHHHHHHh-CCChhhhHhh
Q 000050 2002 DEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGT 2074 (2622)
Q Consensus 2002 ~~ilp~Ll~~L~~~~---~~~~aL~~L~~il~~~~~~ilp~Lip-~-L~~~~~~~~-~~~aL~sLa~~~-g~~l~~~l~~ 2074 (2622)
.+++..+.+--.... -+-.+++.|..+...-.+.-+....+ . ...++.... ............ ......+.=.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 333333322222221 22344444443211000000000000 0 000000000 000000000000 1111223333
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hc----HHHHHHHHHhhcCC-----------------------
Q 000050 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EG----VESLVSELLKGVGD----------------------- 2123 (2622)
Q Consensus 2075 il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~----l~~ll~~Ll~~l~d----------------------- 2123 (2622)
++-.|.+...++..+||..|+..+-.++..+|. +. ++.++-.+...++.
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 444555555688899999999999888877654 22 33334444333321
Q ss_pred -CCh--hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccch
Q 000050 2124 -NQA--SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2622)
Q Consensus 2124 -~~~--~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2622)
..| .+-..|+..+..++...-..+...++.++..|..++..+++.+...+..||..++...+...-
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~ 1496 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS 1496 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 012 233345555555554433345556677777777777888889999999999999887665443
No 167
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.06 E-value=0.2 Score=56.54 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=77.7
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh-
Q 000050 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR- 1583 (2622)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~- 1583 (2622)
.-.+.|++++||.+|+.++..+.+..+ ++ |..+ .+...... .|... ...+..++-.+.+
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~-------L~~A-e~~~~~~~---------sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PF-------LAQA-EESKGPSG---------SFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HH-------HHHH-HhcCCCCC---------CcccH--HHHHHHHHHHHHHH
Confidence 346789999999999999999987532 11 1111 11110000 11110 1122233333333
Q ss_pred ---hhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000050 1584 ---GLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2622)
Q Consensus 1584 ---~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~ 1650 (2622)
.+. +.+..+-....+++..+.....-.+--..+++.++..+...+.+.++++|..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 333 3456677778888888776532222234567888888899999999999999999999998753
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.97 E-value=0.5 Score=53.25 Aligned_cols=143 Identities=15% Similarity=0.275 Sum_probs=100.5
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV 2184 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d-~~V~~~a~~aL~~l~~~~ 2184 (2622)
...++.+...+...+.++++..|..++..++..++.++ .-+..+...+++.++..++.++ ..+...+..++..++...
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34577888888999999999999999999999998874 4466888999999999998655 456777888888776432
Q ss_pred CccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh
Q 000050 2185 PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS 2264 (2622)
Q Consensus 2185 ~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~ 2264 (2622)
... |. -.| +.
T Consensus 100 ~~~-------------------------------p~-----------------------l~R----------------ei 109 (165)
T PF08167_consen 100 RGK-------------------------------PT-----------------------LTR----------------EI 109 (165)
T ss_pred cCC-------------------------------Cc-----------------------hHH----------------HH
Confidence 110 00 011 12
Q ss_pred hhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHh
Q 000050 2265 LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 2322 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L 2322 (2622)
..|.++.++++++..+++ ......++.+|..++...+..++||..++...+...+
T Consensus 110 ~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 110 ATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 234455555566666553 3466677778888888888888888777777665543
No 169
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.95 E-value=0.27 Score=54.93 Aligned_cols=116 Identities=18% Similarity=0.282 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC--hhh
Q 000050 1885 VLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG--KSQ 1958 (2622)
Q Consensus 1885 ~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~--~~~ 1958 (2622)
.++|.+++.+.+.+.--|..|...+.+++.. .++. ++|++++.+..+|+..++++...++.+|..++.... ++.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3444455556777777889999999999998 4444 578999999999999999999999999988844322 478
Q ss_pred HHHhHHhHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000050 1959 LLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d-----------~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2622)
+.+|+.+++|.+....+. .+..+++....++..+-++.|+++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 899999999998743321 234455555566666656666543
No 170
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.90 E-value=0.24 Score=55.93 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhccc------
Q 000050 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~p~~l~~~l~~ll~~L------------~~~L~s~~~~~R~~A~~~L~~lv~~~~~~------ 1919 (2622)
.||..|+.++..++.. .++.+..|++.++|.- .-.+.|++..+|..|+.++..+.++....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3899999999999998 6788888888887643 33456899999999999999998764210
Q ss_pred -------h----------hhhHHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhH-HHhHHhHHHHHHHHhcCCcHH
Q 000050 1920 -------V----------LPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2622)
Q Consensus 1920 -------~----------l~~llp~L~~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~d~~ 1980 (2622)
+ +-++-..|...+. +.+..+-...+.+++.++...+-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 1122222333444 34666777788888888776654433 456788888888888889999
Q ss_pred HHHHHHHHHHHHHH
Q 000050 1981 VRESAGLAFSTLFK 1994 (2622)
Q Consensus 1981 VR~~A~~al~~l~~ 1994 (2622)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999888887754
No 171
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.90 E-value=3.2 Score=53.48 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=48.3
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccc--hhh--hHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1885 VLMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLP--SIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1885 ~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~--~l~--~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
.++..+++.+. +.++.+-..|+.=+|++++..+.. ++. ..-..+++.+.++|+++|..|+.++..++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555566663 556677778888899999987433 322 134456677889999999999999988754
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.38 Score=58.65 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=115.3
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhh------HHHHHHHh
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 2357 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~------ll~~Ll~~ 2357 (2622)
.+.+-|..++.-|..+++.++....=.--..+..++..+.+++.++|..|+..+|..+...|.+.. .++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356788999999999998876533211112344566689999999999999999999876665443 34567777
Q ss_pred hhc-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcCchH--HHH-HH
Q 000050 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 2431 (2622)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~-~l 2431 (2622)
+.. .+..+|..++.|+..+|.+.......-..-.=+..|...+.+ .+...++.++..++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457899999999999998765443222222235666777777 455667888999999887655432 111 11
Q ss_pred HH-HHhhcCCCCchhhHhHHHHHHHHHhh
Q 000050 2432 QE-LLNLASSPSWAARHGSVLVFATFLRH 2459 (2622)
Q Consensus 2432 ~~-ll~~~~~~~~~~r~~~~~~L~~~l~~ 2459 (2622)
+. +..+..+.++..+..+..++...+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 12 22444555555566666666555543
No 173
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=2.2 Score=55.44 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=103.2
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhh-Chhh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----cc
Q 000050 1848 ALYMVRSDVSLSVRQAALHVWKTIVAN-TPKT----LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL----GE 1918 (2622)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~-~p~~----l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~----~~ 1918 (2622)
.+|..+.-.|..||..|+.++-.+..- .|.. ...+++.=...+.+.|.|+.+.+|..|..-+..+.... +.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 456678889999999999998777652 2333 23344445567788899999999999988877766554 33
Q ss_pred chhhhHHHHHhhhc-CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1919 RVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1919 ~~l~~llp~L~~~L-~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
.++..++..+..-+ .|...+||..+..+|..++.+ ....+.++.++|.+...+.|....||-++...+..+-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 34444444443333 466779999999999887653 2334567889999999999999999998877776663
No 174
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.86 E-value=1.9 Score=56.29 Aligned_cols=290 Identities=13% Similarity=0.172 Sum_probs=145.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCC-ChhhHHhHHHHH
Q 000050 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDP-SASRRQGVCIGL 1947 (2622)
Q Consensus 1876 p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~-~~~vR~~a~~~L 1947 (2622)
+..+.++.+.++..++..+..+....-.-..+|+-+++...++.+ ++.+..++....++| +|.--.-...++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 345566777777777777754322222334555555555555443 344444444444544 577777788899
Q ss_pred HHHHHhhCh---hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh----hhhhhhHHHHHHhc-cc-CCch
Q 000050 1948 SEVMASAGK---SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHAL-ED-DQTS 2018 (2622)
Q Consensus 1948 ~~li~~~~~---~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~----~~~~~ilp~Ll~~L-~~-~~~~ 2018 (2622)
+.++...+. +.+..+.+.+.|.+...|...-.+.-..+.+.++.+.+.... +....++|.|+.-- -. ...-
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni 176 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI 176 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc
Confidence 988887554 334577889999999999876666667777888888776652 23344555555322 11 1111
Q ss_pred hHHHHHHHHHHhhhccccc--cc------hhhhhhcCCCch-HHHHHHHHHHHHhCC-ChhhhHhhhHHHHHHhcC-CCC
Q 000050 2019 DTALDGLKQILSVRTTAVL--PH------ILPKLVHLPLSA-FNAHALGALAEVAGP-GLNFHLGTILPALLSAMG-DDD 2087 (2622)
Q Consensus 2019 ~~aL~~L~~il~~~~~~il--p~------Lip~L~~~~~~~-~~~~aL~sLa~~~g~-~l~~~l~~il~~Ll~~l~-~~~ 2087 (2622)
.....-|+..+...+..+. .. +..+|....... ..-.-+.++...+.. .+.+|++.|+..++..+. .+.
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT 256 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 1222233334433333322 11 123444444332 333455666666554 689999999999999995 334
Q ss_pred HHHHHHHHHHHHHhhhccChhc------------HHHHHHH-HHhhcCC-CChhHHHHHHHHHHHHHhhccc---ccccc
Q 000050 2088 MDVQSLAKEAAETVTLVIDEEG------------VESLVSE-LLKGVGD-NQASIRRSSAYLIGYFYKNSKL---YLVDE 2150 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~~~~------------l~~ll~~-Ll~~l~d-~~~~vR~~A~~~L~~l~~~~~~---~l~~~ 2150 (2622)
+.........+..++...+.+. ...++.. ++..+.. ..+.-|..++-.+..+...++. .+...
T Consensus 257 ~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~ 336 (435)
T PF03378_consen 257 EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQL 336 (435)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHH
Confidence 4433333222222222222211 2222221 1222222 2344555555555554332222 23445
Q ss_pred HHHHHHHHHHHhcCC
Q 000050 2151 APNMISTLIVLLSDS 2165 (2622)
Q Consensus 2151 ~~~il~~L~~~l~d~ 2165 (2622)
.+.++..++.++..+
T Consensus 337 w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 337 WPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC
Confidence 566666666666544
No 175
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.69 E-value=0.053 Score=41.87 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
No 176
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.64 E-value=24 Score=47.30 Aligned_cols=287 Identities=15% Similarity=0.115 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCC
Q 000050 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2622)
Q Consensus 1352 ~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2622)
...|..|+..+...+...+...+. .+....+.++..++....|++++..+..+.++-......--...+..+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888888888888887776664 677778888877767788999998888888765431111111222222111112
Q ss_pred CCHHHHHHHHHHHHHHHH---hhcHHhHHhhHHHHHhhccCC---------------------------ChhhHHHHHHH
Q 000050 1432 QVVAVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQL 1481 (2622)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~ 1481 (2622)
++-..|- +++..+.. .+.. ....+.|.+...+..- +-..-..-+.+
T Consensus 82 ~d~~~~l---~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 82 DDFDLRL---EALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred hhHHHHH---HHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Confidence 2223333 33333332 2211 1234444444333210 00000111222
Q ss_pred HHHHHhhCchhh-hhhhhhhHHHHhhhhcCC-CHHHHHHHHHHHHHHhh--hcCChhHHhHHHHHHhhcCCCC--hhHHH
Q 000050 1482 LGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKY 1555 (2622)
Q Consensus 1482 L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~ilp~Ll~~l~d~~--~~~r~ 1555 (2622)
+.++..-....+ ...+..++..++.++..+ ++..=+.+...+..+.. .+++..+..++..|.....-.+ ...-.
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~ 237 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWR 237 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHH
Confidence 233332111111 123445666666665433 33334677777777765 4555667777777777643321 11113
Q ss_pred HHHHHHhccccccCChhhhhhHHHHHHhhh------cCCCHHHHHHHHHHHHHhhhhcCCCCcc-cch-HhhhHHHHHHH
Q 000050 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDM-IPY-IGLLLPEVKKV 1627 (2622)
Q Consensus 1556 al~~L~~~~~~~~~~~~~l~~i~p~L~~~l------~d~~~~vr~~a~~~l~~l~~~~~~~~~l-~~~-l~~ll~~L~~~ 1627 (2622)
++..|..+. .+.. .+-.+...+ ..++..+-+.|...++.+....+...-. .++ ...+++.+...
T Consensus 238 ~m~nL~~S~----~g~~----~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 238 TMRNLLKSH----LGHS----AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA 309 (464)
T ss_pred HHHHHHcCc----cHHH----HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH
Confidence 444443311 1112 223333333 1235666778888888876543221111 111 12489999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH-hhhCC
Q 000050 1628 LVDPIPEVRSVAARAIGSLI-RGMGE 1652 (2622)
Q Consensus 1628 L~d~~~~vR~~a~~aL~~L~-~~~g~ 1652 (2622)
+..+++.|-......+..+. +.++.
T Consensus 310 l~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred HhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 99777777767777777776 44443
No 177
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.51 E-value=1.7 Score=57.02 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhhHH-HHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCC
Q 000050 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 1511 (2622)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp-~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~ 1511 (2622)
...|-+|..+++.++..++......++. .++..|.+...-.|..+..++..++.......... .+.+.+.|..+|.++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4568889999999999998888777776 58889999988899999999999998644321111 345556666666633
Q ss_pred C-----------HHHHHHHHHHHHHHhh
Q 000050 1512 H-----------PKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1512 ~-----------~~VR~aA~~aL~~l~~ 1528 (2622)
. ..+|..|..-+..|..
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3455555555554443
No 178
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.47 E-value=17 Score=47.12 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhh--hhhhhhhhhHHHHHhhcCCCCH----hhHHHHHHHHHHH
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS--LKEFVIPITGPLIRIIGDRFPW----QVKSAILSTLSII 2299 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~--l~p~v~~i~~~Li~~l~~~~~~----~vk~~al~~L~~L 2299 (2622)
.++..+.+...++.++++.+|.+|..+...++.....+. ..+.+.-+..|+...++.+... +++..++..++.+
T Consensus 271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 455667777778889999999999999999997654322 2344455667877776654444 6677777777765
Q ss_pred H
Q 000050 2300 I 2300 (2622)
Q Consensus 2300 ~ 2300 (2622)
+
T Consensus 351 l 351 (372)
T PF12231_consen 351 L 351 (372)
T ss_pred H
Confidence 5
No 179
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.46 E-value=22 Score=46.10 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=136.3
Q ss_pred ccchHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHh------hhCCCCchhhHHHHHHHhhhcCChHHH-HHH
Q 000050 1613 MIPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKSDNSNVER-SGA 1678 (2622)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d------~-~~~vR~~a~~aL~~L~~------~~g~~~~~~ll~~Ll~~L~~~~~~~~r-~~a 1678 (2622)
+...++.++..+..-+.. | +.++-..|.+++|.+.. .+.++....++......+.+....... ...
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444455555444432 2 56777899999998874 233333334566666666554433221 122
Q ss_pred HHHHHHHHHHhchhHH-----HhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh
Q 000050 1679 AQGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~ 1751 (2622)
..+++. ..++...+ +.++ ..+..+.+ +...+-...+.++..+...++..+..+...-+|.++..+-+...
T Consensus 113 l~~ls~--Q~f~~~~~~~~~~~~l~-~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 113 LWCLSD--QKFSPKIMTSDRVERLL-AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHHc--CCCCCcccchhhHHHHH-HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 222221 12232222 2222 22222232 34445556677888888888887877777778888888878888
Q ss_pred HHHHHHHHHHHHHHHHhhhc-hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHH
Q 000050 1752 SVRDAALGAGHVLVEHYATT-SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~~~~-~i~~-llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~ 1829 (2622)
.+|..|...+..+...++.. .+.. +.+.+...+.++ +......+-+..++. +.++....-..
T Consensus 190 ~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~--------------~~~~~~~a~~i 253 (372)
T PF12231_consen 190 DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIK--------------SKDEYKLAMQI 253 (372)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHh--------------CcCCcchHHHH
Confidence 89998877776665555433 1222 222222222222 444444444555441 10122223345
Q ss_pred HHHHHHHhCh------hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1830 GRAIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1830 ~~~l~~~Lg~------e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+..++-.+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 254 W~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 254 WSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5555555653 3556677777778888999999999999999986
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.9 Score=58.75 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=111.8
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc----ccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG- 1649 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~- 1649 (2622)
...-|.+-++++-++.+||..|+..+-++.-.. +|+. +...++.=...+..+|.|+.|.||..|...+..+...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999998887653 3332 3333444456678889999999999999887776653
Q ss_pred ---hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1650 ---MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1650 ---~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~-~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
+++....+++..+.+.+..+....+|...+.++..++.. .....++.++|.+--.+.|....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 334455677777777777777777899999998887652 2233567788877777888899999988887776654
Q ss_pred h
Q 000050 1726 S 1726 (2622)
Q Consensus 1726 ~ 1726 (2622)
.
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 3
No 181
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.06 E-value=0.49 Score=52.83 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhh----------------------------------H-----H
Q 000050 2312 PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDP----------------------------------L-----V 2351 (2622)
Q Consensus 2312 ~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~----------------------------------l-----l 2351 (2622)
|+|.+.+++.+..+ +..+|..+.++||.|..++|..-+ + +
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 89999999999886 899999999999999765432111 1 1
Q ss_pred HHHHHhhhcCC-HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000050 2352 GDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2622)
Q Consensus 2352 ~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2622)
..|+..++++. ..-...+++|+-.++...|.+. .+|.+++++.+...++..++..|+..-.-|+.+.
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22333333332 3334456666666665555554 5666666666666666555566655555555544
No 182
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=45 Score=48.57 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhhh-CccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHcCCC
Q 000050 1356 RGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC--EKLGRLFEPYVIQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1356 ~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La--~~~~~~~~~~v~~ilp~ll~~l~D~ 1432 (2622)
..|+.+....+.+. |..... .++..+.+...+..+|++|.+++.-+..+. ..++ .++....++-..+...+.|.
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~--e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQP--EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHH--HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcch
Confidence 34444444444333 333332 567777766667778999998777665544 2344 45666778888889999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC
Q 000050 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D 1510 (2622)
+..||+.|..++.-++..--...+...-........+ .+--..|||+..||+++-..|-.+...+|+.+..+.....+
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e 1661 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE 1661 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC
Confidence 9999999999988776532111111111122222222 23345789999999999888877666666666655555556
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q 000050 1511 THPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+ ..++.++-+++..|-..-
T Consensus 1662 ~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1662 S-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred c-hHHHHHHHHHHHHHHHHh
Confidence 4 667888888888776544
No 183
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=29 Score=45.31 Aligned_cols=147 Identities=14% Similarity=0.213 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC-----h---hhHHHHHHHHHHHHHHHhcCCC------------HHHHH
Q 000050 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERRQ 1903 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----p---~~l~~~l~~ll~~L~~~L~s~~------------~~~R~ 1903 (2622)
.++..+..+......+|-+.....|..+.... . ..|++|+..++..+.....-+. .+.|.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHH
Confidence 44445555666667789999999998876521 1 3468899999999888776221 24677
Q ss_pred HHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCC--cHH
Q 000050 1904 VAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILE 1980 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~--d~~ 1980 (2622)
.....+.++.--.|.. .+..+.-.+.+ +..+++.-.+++..+..++.+..++ -.+++|.+.+.++.- ...
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchh
Confidence 7888888888777765 34444444443 4567888889999888887766543 356777777766532 233
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000050 1981 VRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1981 VR~~A~~al~~l~~~~g 1997 (2622)
+|..++..+|.+.+...
T Consensus 444 ~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVE 460 (559)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876543
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=0.77 Score=62.05 Aligned_cols=218 Identities=20% Similarity=0.166 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHhcccC------hhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHhh
Q 000050 2328 TVRSSAALALGKLSALSTR------VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLV 2400 (2622)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~~~~------~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l 2400 (2622)
.=|.+|..-||++..++|= --.++|-+++.++++-.+.|-...--...++.-- ++... -..+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 4577888888887665541 1246788888888877777776655555555321 11111 11111111222223
Q ss_pred cC---CCHHHHHHHHHHHHHHHhhcCchHH----HHHHHHHHhhcCC-CCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2401 YH---DDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~----~~~l~~ll~~~~~-~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.+ -+++.|.++|..|..++.+++-.+- .+++...+..+.+ +.+-.|+-.+.+|+.+-.+.++.-.. +.-+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-ccccc
Confidence 33 1467899999999999988765431 1233333333444 35667777888898887777665432 23345
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCch-------------hhHhHH----HHHHhhcCCCCHHHHHH
Q 000050 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTT-------------VVVDIL----ASVVSALHDDSSEVRRR 2535 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~-------------~l~~~l----~~l~~~l~d~s~dvr~~ 2535 (2622)
..+.|...+.|.-+++|.+|+-|+|.++....+..++... .....+ ..++..++|.++-||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 6677788888999999999999999999863211000000 011222 36677789999999999
Q ss_pred HHHHHHHHHhhC
Q 000050 2536 ALSALKSVAKAN 2547 (2622)
Q Consensus 2536 a~~~l~~~a~~~ 2547 (2622)
.+..+...+..+
T Consensus 723 v~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 723 VVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHHhh
Confidence 888888777654
No 185
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.74 E-value=8.7 Score=47.59 Aligned_cols=218 Identities=20% Similarity=0.176 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hhCc-cch-hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-cc
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGI-SSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RL 1413 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~-~lg~-~~l-~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~ 1413 (2622)
-++..+......++|..-..+..-|..+.+ .-.. ..+ ....+...|.+++...-...+-.-|+..+..+.+..| +.
T Consensus 11 ~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~ 90 (307)
T PF04118_consen 11 EVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDG 90 (307)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 344555555555677776665555555555 1111 111 1235777888888876556677789999999999988 34
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p 1490 (2622)
+...+.-..|.++..+......||-.-.+.....+-.+++. ..+.++..++.+++++.-........++..+.....
T Consensus 91 L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~ 170 (307)
T PF04118_consen 91 LAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG 170 (307)
T ss_pred HHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC
Confidence 55555556788888888888899988888888777677663 235566666778888777777777788877776433
Q ss_pred hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC---------------ChhHHhHHHHHHhhcCCCChhHH-
Q 000050 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHTK- 1554 (2622)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~ilp~Ll~~l~d~~~~~r- 1554 (2622)
.. .++..++.++- ++|.+|..|..-+..-..... .++..-++..+...+.|++.-++
T Consensus 171 ~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR 243 (307)
T PF04118_consen 171 DK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQR 243 (307)
T ss_pred hh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHH
Confidence 22 23344444444 378888888765543322222 12234467788888888876654
Q ss_pred HHHHHHHh
Q 000050 1555 YSLDILLQ 1562 (2622)
Q Consensus 1555 ~al~~L~~ 1562 (2622)
.+++.+..
T Consensus 244 ~~LDlLl~ 251 (307)
T PF04118_consen 244 GFLDLLLS 251 (307)
T ss_pred HHHHHHHH
Confidence 67777664
No 186
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=93.71 E-value=17 Score=47.69 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCC------------CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHh
Q 000050 1631 PIPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2622)
Q Consensus 1631 ~~~~vR~~a~~aL~~L~~~~g~~------------~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ll 1698 (2622)
.....|..-.+|++.+...+-+. +.+.++..+.+.+.+. ...+|-.++.+++++...+|....+.++
T Consensus 208 e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~-~~~~rf~~a~~~aki~srl~w~l~~sfi 286 (993)
T COG5234 208 ENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSI-DSFVRFSAAKGLAKIISRLPWNLAESFI 286 (993)
T ss_pred cHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccc-cHHHHHHHHhhHHHHHhhcccccHHHHH
Confidence 34556666667777766655442 1223334443333333 2447888899999998877754222222
Q ss_pred H------------HHHHhcc--CCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCCh--------HHHHH
Q 000050 1699 P------------DIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE--------SVRDA 1756 (2622)
Q Consensus 1699 p------------~l~~~l~--~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~--------~VR~~ 1756 (2622)
. .+.+.+. ..++.+-.+++..++ ++...+-++..-+ +.|.+.+++..+.+ .||++
T Consensus 287 ~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRds 363 (993)
T COG5234 287 DIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDS 363 (993)
T ss_pred HHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecc
Confidence 1 1111111 124445555555555 5555444433322 56666677764432 57888
Q ss_pred HHHHHHHHHHHhhhchhhh----hHHHHhh-ccCCCchHHHHHHHHHHHHHH
Q 000050 1757 ALGAGHVLVEHYATTSLPL----LLPAVED-GIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1757 al~al~~lv~~~~~~~i~~----llp~l~~-~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
+.-.++.+...++....+. +.--+.+ .++|..-.+|.++..++-+.+
T Consensus 364 s~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 364 SCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred cceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 7777777776666554433 2333333 788998889998887776665
No 187
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=1.1 Score=53.33 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=106.8
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH---hhHHHH
Q 000050 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK---LVLPSL 1463 (2622)
Q Consensus 1387 l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~---~ilp~L 1463 (2622)
+.++ +|...-.++..+..+++.-++.+.+.+..++..+.+.++++...|-.+|+.++..+++.+...... .++-.|
T Consensus 97 L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 97 LSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred hchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 799999999999999988778888888999999999999999999999999999999988776543 222222
Q ss_pred HhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1464 l~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
+..-..++-.++..+-.+|.+|.+....+ .+++.|..++.+.++.+|..++.+.......++
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 22223455678888999999998864332 345566667888999999999988877776654
No 188
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.66 E-value=1.7 Score=57.10 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhccChhcHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHhcCCC
Q 000050 2090 VQSLAKEAAETVTLVIDEEGVESLVS-ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD-EAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~l~~ll~-~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~-~~~~il~~L~~~l~d~d 2166 (2622)
-|..+..+++.++..+..+.+..+.. .|...+++.....|..++..+..++......... ..+.+...|...+.++.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 47788889999998887777777777 5889999999999999999999999875432211 13456666666666443
No 189
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.57 E-value=4.8 Score=55.81 Aligned_cols=170 Identities=14% Similarity=0.080 Sum_probs=90.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-----
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS----- 1452 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~----- 1452 (2622)
.-+.++.+.+.+++ -... .+..++..+.......-..++..+++.+-.-..-+++.+|..|+-++..+....-
T Consensus 357 ~a~~~i~~~i~~~~-~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKK-ITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCC-CCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556777776653 2222 2333344444333322233343433332222223467899999888887766321
Q ss_pred --HHhHHhhHHHHHhhcc----CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc---CCCHHHHHHHHHHH
Q 000050 1453 --AQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2622)
Q Consensus 1453 --~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA~~aL 1523 (2622)
...+..++|.+.+.|. ..+-..+...+.+||++.. +..++.+...+. +..+.+|.+|++||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 1123566777666553 2344456677888887754 333344444443 34678999999999
Q ss_pred HHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000050 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2622)
Q Consensus 1524 ~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2622)
..++...+......+++.+.+.- .+..+| .|+..+.
T Consensus 505 r~~a~~~p~~v~~~l~~i~~n~~--e~~EvRiaA~~~lm 541 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIYLNRA--EPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHhCchHHHHHHHHHHcCCC--CChHHHHHHHHHHH
Confidence 99987654322233444443221 223466 4555554
No 190
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=42 Score=45.28 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
-|..|.+++..+.+.|... +.+-++..+.+.-. +..+-..+++.+-.++.+ +. .+ ...|++...+.
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~-----dd--~~-~v~dds~qsdd 108 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSH-----DD--SP-EVMDDSTQSDD 108 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhc-----Cc--ch-hhcccchhhhH
Confidence 4788888998888777443 33334443333211 222333344444433321 00 00 00011112233
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHH---HHHHHHHHHHHhcCCCHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVA 1905 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~---l~~ll~~L~~~L~s~~~~~R~~A 1905 (2622)
.+.-+.+.+-. ..+.+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+
T Consensus 109 ~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 33444443321 12344445555667788999999999999999988777654 47778888899999999999999
Q ss_pred HHHHHHHHHHhc
Q 000050 1906 GRALGELVRKLG 1917 (2622)
Q Consensus 1906 ~~~L~~lv~~~~ 1917 (2622)
+-.|.++++..+
T Consensus 187 iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 187 ILLLSELVKDNS 198 (970)
T ss_pred HHHHHHHHccCc
Confidence 999999987654
No 191
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=37 Score=44.40 Aligned_cols=312 Identities=15% Similarity=0.175 Sum_probs=154.6
Q ss_pred hHhhhHHHHHHHhcC---CCHHHHHHHHHHHHHHHh--hhCCCCc---hhhHHHHHHHhhhcCChHHHHHHHHHHHHHHH
Q 000050 1616 YIGLLLPEVKKVLVD---PIPEVRSVAARAIGSLIR--GMGEENF---PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2622)
Q Consensus 1616 ~l~~ll~~L~~~L~d---~~~~vR~~a~~aL~~L~~--~~g~~~~---~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~ 1687 (2622)
+...++..+..++++ +...+-..+.+++++-.. .+..+.+ ..++..++..++.+. --..+..++..+..
T Consensus 150 ~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~---lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 150 QVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDE---LHEEATECICALLY 226 (559)
T ss_pred hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccch---hhHHHHHHHHHHHH
Confidence 334455555555543 335666788888887665 3333322 244555666666332 12234444443333
Q ss_pred Hhch--h--HH-------HhHhHHHHHhc-cCCChhhHHHHHHHHHHhhhhhCcchh---hhHHhHHHHHHhhcCCCChH
Q 000050 1688 ALGT--V--YF-------EHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQ---NYLQQVLPAILDGLADENES 1752 (2622)
Q Consensus 1688 ~~g~--~--~l-------~~llp~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~---p~l~~ii~~ll~~L~d~~~~ 1752 (2622)
..-. + .+ ..+++...... ...+.+-+++....|..++..+-.... .+.-.++..++-...+.+.+
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchh
Confidence 2110 0 01 12233333322 234666777778888777765421110 01122444455555555556
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchH--HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-----
Q 000050 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS----- 1825 (2622)
Q Consensus 1753 VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~r--vR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~----- 1825 (2622)
|-+.....+..+-+..-.. .|...+ .|--..+++.-+.+++.-..+..... +++++..
T Consensus 307 vie~SF~fW~~lse~l~~~-------------~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~--Ee~~~f~~fR~~ 371 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLT-------------DDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP--EEESEFFEFRLK 371 (559)
T ss_pred hhhhhHHhhhhhHHHHhcc-------------ccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc--cchhHHHHHHHH
Confidence 6555555544433221110 000011 12333445555555543221100000 0111110
Q ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000050 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903 (2622)
Q Consensus 1826 ~~~~~~~l~~~Lg~e~~~~il~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~ 1903 (2622)
..++.+.+.-.+|. ++.++.+|+.+ +..+|+.-++++-.+..++.+.+..-.+++|.+++.+.+.=. . ...|.
T Consensus 372 v~dvl~Dv~~iigs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~-Q-~~~~~ 446 (559)
T KOG2081|consen 372 VGDVLKDVAFIIGS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE-Q-APLRY 446 (559)
T ss_pred HHHHHHHHHHHhCc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc-c-hhHHH
Confidence 11112222233443 34566666554 356899999999999999998876667788888887764322 2 23888
Q ss_pred HHHHHHHHHHHHhccc--hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1904 VAGRALGELVRKLGER--VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1904 ~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
++...+|++.+.+... .+..++..+..++.... ....+..++..++.
T Consensus 447 ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 447 TSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 8998888888766433 34455555555555443 33444455555544
No 192
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.13 E-value=42 Score=44.94 Aligned_cols=344 Identities=16% Similarity=0.178 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhh
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~-~g~~~~~~ll~~Ll~~L~ 1667 (2622)
++++-..+.+++|.+.+.+.- .-+. -+..++.+.+.+. ..++|.+|..|+-+++.. +.+-.--.++..+...+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 778888888888887765422 1111 2346677777776 478999999999888763 222111122332312111
Q ss_pred -----hcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhc-cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHH
Q 000050 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2622)
Q Consensus 1668 -----~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ 1741 (2622)
+.+.. +-......++.++.+.|.+.. .+.+.+ +..+...++.+... +..++|.
T Consensus 281 lfg~~s~dq~-~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~~---------------ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSADQM-DDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLSI---------------LLEIVPY 339 (980)
T ss_pred HHhhhccccc-cCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHHH---------------HHHHHHH
Confidence 11100 111233445666777776522 111222 22344444433322 3347788
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC-CCC
Q 000050 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG-GSD 1820 (2622)
Q Consensus 1742 ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~-~~d 1820 (2622)
+++.+.|+++++-......+...+..+... ..+.+.. ++-.. ..+-+...++.-....-..++ .++
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl----------~~ls~~q-k~~l~--~illai~kqicydemy~nddn~tg~ 406 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL----------KALSSPQ-KVPLH--KILLAIFKQICYDEMYFNDDNVTGD 406 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc----------ccccchh-hccHH--HHHHHHHHHHhccHHhhcccCCCCc
Confidence 889998888776555444443322211110 0011110 00000 011111111100000000011 111
Q ss_pred CCcccHHHHHHH---HHHHhC---hhh----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh--------HH--
Q 000050 1821 DEGASTEAHGRA---IIEVLG---RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--------LK-- 1880 (2622)
Q Consensus 1821 de~~~~~~~~~~---l~~~Lg---~e~----~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~--------l~-- 1880 (2622)
|+++.-++.++. +.+.++ ++. ..+.++.-.+.....+|..-+.|+..+-.+.+..+.. ..
T Consensus 407 EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~ 486 (980)
T KOG2021|consen 407 EEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS 486 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence 111112222222 222222 221 1222333334457788999999999988888755421 11
Q ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--cchhhhHHHHHh--hhcCCCChhhHHhHHHHHHHHH
Q 000050 1881 EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVM 1951 (2622)
Q Consensus 1881 ~~l~~ll~~L~~~--L~s~~~~~R~~A~~~L~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~~L~~li 1951 (2622)
..+..+++.+++. .+.++ +......+..+++.. . ....|.++..+. .++.+.+..||..+.+.....+
T Consensus 487 ~vl~~~~~ll~tsqv~~h~h---~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfV 563 (980)
T KOG2021|consen 487 QVLFLNELLLMTSQVLAHDH---ELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFV 563 (980)
T ss_pred HHHHHHHHHHHHcccccCCc---hHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHH
Confidence 1222333333322 22334 344444454455432 1 113444554444 3677788999999999988887
Q ss_pred HhhChhhHHHhHHhHHHHHHHHhc
Q 000050 1952 ASAGKSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
+... ..+.+|.+.++..+...|.
T Consensus 564 KlLk-kqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 564 KLLK-KQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHc
Confidence 7653 5677788888888888773
No 193
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.07 E-value=0.62 Score=52.04 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=83.5
Q ss_pred HhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh---chh
Q 000050 1617 IGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV 1692 (2622)
Q Consensus 1617 l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~---g~~ 1692 (2622)
+|.+++.+...+. +.++.+|..+.+++|.++.. .+-.+.... ..... .....-............+. ..+
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k~~~----~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHKSIQ----KSLDS-KSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHhccc----ccCCc-cccccccccchhhHHhhccCCCchHH
Confidence 5788999988887 45799999999999998652 111111000 00000 00000000000000111111 122
Q ss_pred HH-HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000050 1693 YF-EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1693 ~l-~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv 1765 (2622)
+. .-.+..+++.++++. ..-+..++.++..+....|..-.||+++++|.++..+....+..|+..+.-+..++
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22 233455666666642 33445677888888888888789999999999999998777777777766665554
No 194
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.69 E-value=2.6 Score=47.57 Aligned_cols=138 Identities=25% Similarity=0.160 Sum_probs=98.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC
Q 000050 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2622)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2622)
...-+...+.+++++.|-.++..++.+++..+.+.+..+.......++.+++...+..++..++.++..+.......
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~--- 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK--- 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC---
Confidence 44445566777788999999999999999987788877778888888999988778889999999999988765431
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHH
Q 000050 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2622)
Q Consensus 2310 ~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2622)
|.+ .|..+ .|++..+++.+++.+++ ......++++|..++...+..+ .++.
T Consensus 103 --p~l--------------~Rei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~-rp~~ 153 (165)
T PF08167_consen 103 --PTL--------------TREIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTF-RPFA 153 (165)
T ss_pred --Cch--------------HHHHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccc-cchH
Confidence 222 22211 25566667777776653 4567788888888888776655 4555
Q ss_pred HHHHHHHHHh
Q 000050 2390 IRVYSVLKDL 2399 (2622)
Q Consensus 2390 ~~i~~~L~~~ 2399 (2622)
.++-..+...
T Consensus 154 ~ki~~~l~~l 163 (165)
T PF08167_consen 154 NKIESALLSL 163 (165)
T ss_pred HHHHHHHHHH
Confidence 6655555433
No 195
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.57 E-value=1.9 Score=50.27 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhh-----cCCCCH-----hhHHHHHHHHHHHHHhcCCCccCchHHHHHH
Q 000050 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317 (2622)
Q Consensus 2248 ~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l-----~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~ 2317 (2622)
........+.+... -.+.||+-++.+.++.++ +.. +. .+|-.|...++..+.+.+...+..-|.+.++
T Consensus 255 Tv~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 255 TVVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 34455555555443 346788888877766543 332 22 3788889999999999999888889999999
Q ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHh------cccChhhHHHHHHHhhhc
Q 000050 2318 FIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2318 llk~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~ll~~Ll~~l~~ 2360 (2622)
++|.+-|. -....--|.+++..+.. +.|+.+.+...+-+.+..
T Consensus 333 llKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~ 383 (450)
T COG5095 333 LLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK 383 (450)
T ss_pred HHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc
Confidence 99998885 46777788888887733 357777666655555543
No 196
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.49 E-value=51 Score=44.22 Aligned_cols=425 Identities=16% Similarity=0.112 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcC
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2622)
...|-.|++-+...+...+- .-++.++...-..+.. ...+.|..+...|..+++.-+.. ....+...+...-.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~ 80 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSN 80 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCC
Confidence 34566677777766665553 3455555555555553 35678999999999999876542 22344444443333
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHhChhh---hhhhHHHHH
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS-TLFKSAGMQA---IDEIVPTLL 2009 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~-~l~~~~g~~~---~~~ilp~Ll 2009 (2622)
+++-..|..++.+|.+ .| ..+..+...+.|.+...+...-..++..-..+-. ......+... -+..+
T Consensus 81 ~~d~~~~l~aL~~LT~----~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l---- 151 (464)
T PF11864_consen 81 DDDFDLRLEALIALTD----NG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL---- 151 (464)
T ss_pred chhHHHHHHHHHHHHc----CC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH----
Confidence 4455677777776654 33 3344455666666666553322111111000000 0000000000 00000
Q ss_pred HhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChh-hhHhhhHHHHHHhc-CCCC
Q 000050 2010 HALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLN-FHLGTILPALLSAM-GDDD 2087 (2622)
Q Consensus 2010 ~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~-~~l~~il~~Ll~~l-~~~~ 2087 (2622)
...++-+..++.-. ...+. ..+..++..++... ...+
T Consensus 152 ---------~~ll~~l~nviKfn--------------------------------~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 152 ---------SDLLQFLVNVIKFN--------------------------------FNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred ---------HHHHHHHHHHHhcC--------------------------------CCCCCHHHHHHHHHHHHHHHhccCc
Confidence 01111111111000 00011 22333444444443 2333
Q ss_pred HHHHHHHHHHHHHhhh--ccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc--
Q 000050 2088 MDVQSLAKEAAETVTL--VIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-- 2163 (2622)
Q Consensus 2088 ~~vr~~a~~al~~l~~--~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-- 2163 (2622)
+..-...+..++.++. .++.+.+..++..|+...... .....+-.++..+++. ......+..|+..+.
T Consensus 191 ~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------~~g~~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------HLGHSAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------ccHHHHHHHHHHHHccc
Confidence 3333566777888776 335577888998888876543 5555667777777752 233567777777773
Q ss_pred CC----ChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHc
Q 000050 2164 DS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI 2239 (2622)
Q Consensus 2164 d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~ 2239 (2622)
++ +..+...|...++.++-..+++. +|. ++-....++|.|...+.
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~-----------------------------~~~--l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQG-----------------------------YPS--LPFSPSSVLPSLLNALK 311 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCC-----------------------------cce--ecccHHHHHHHHHHHHh
Confidence 22 23334444444444433222111 111 11122237777777777
Q ss_pred cCCHHHHHHHHHHHHHHH-hhcChhhhhhhhhhhhHHHHHhh---cCCCC--------HhhHHHH---HHHHHHHHHhcC
Q 000050 2240 SGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRII---GDRFP--------WQVKSAI---LSTLSIIIRKGG 2304 (2622)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~-~~~~~~~l~p~v~~i~~~Li~~l---~~~~~--------~~vk~~a---l~~L~~L~~~~~ 2304 (2622)
.+++-+-......+..+. ...+........+.+...+.++. ..... ..++... +..+..+... +
T Consensus 312 ~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~-~ 390 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQ-H 390 (464)
T ss_pred CCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhC-C
Confidence 665555445555555555 33332222222233322222221 11111 1233222 2223333333 1
Q ss_pred CCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hcccChhhHHHHHHHhhh--cCCHhHHHHHHHHHHHH
Q 000050 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQ--VSDAGIREAILTALKGV 2376 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~-~~~~~~~~ll~~Ll~~l~--~~d~~vr~~~l~AL~~v 2376 (2622)
.+..-.+.+...|.++...-.+.........-.+.+ -.++.+-.-+..+++.+- +.+..+|-.+++.+.++
T Consensus 391 -~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 391 -DFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred -CcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence 122123556777766655533332222221111111 123445566667777653 34578898888887653
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=3.2 Score=56.57 Aligned_cols=152 Identities=20% Similarity=0.322 Sum_probs=107.6
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHH-HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhc--c
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL-MNTLISSLAS---SSSERRQVAGRALGELVRKLG--E 1918 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~l-l~~L~~~L~s---~~~~~R~~A~~~L~~lv~~~~--~ 1918 (2622)
+++-+...++.+..+.|..-+-+|..+....|..-.+.+..- -...++.+.+ -++++|.+|+..|..+++... .
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 344444456777788888888999988876664433333220 0111111222 246899999999999998753 2
Q ss_pred c--hhhhHHHHHhhhcCC-CChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000050 1919 R--VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2622)
Q Consensus 1919 ~--~l~~llp~L~~~L~d-~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~ 1995 (2622)
. .-..++.+....++| +.+-.|+=+|.+||.+-+......+...-......+...+.|+-++||.+|.-||+++..+
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 346778888888888 4788999999999999887765544444455666778889999999999999999999875
Q ss_pred h
Q 000050 1996 A 1996 (2622)
Q Consensus 1996 ~ 1996 (2622)
.
T Consensus 673 ~ 673 (1387)
T KOG1517|consen 673 G 673 (1387)
T ss_pred c
Confidence 4
No 198
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.08 E-value=2.7 Score=58.95 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=76.9
Q ss_pred hhhHhHHHHHHHHHhh-CCc-----------cccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCc
Q 000050 2444 AARHGSVLVFATFLRH-NPS-----------AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT 2511 (2622)
Q Consensus 2444 ~~r~~~~~~L~~~l~~-~~~-----------~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~ 2511 (2622)
..+..+.+++..++.. +.. ......+.+.+...+.......+..-+..++.|+|.+=.
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---------- 519 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---------- 519 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------
T ss_pred hHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------
Confidence 3556677777777642 111 112233455555555555566677888899999997521
Q ss_pred hhhHhHHHHHHhhcCC---CCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhccc
Q 000050 2512 TVVVDILASVVSALHD---DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2622)
Q Consensus 2512 ~~l~~~l~~l~~~l~d---~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~ 2588 (2622)
...++.+...+.+ .+..+|.+|+.+++.++..+|+.+++ ++=++|....+ +..||.||. ..+++-.
T Consensus 520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~----~l~~I~~n~~e-~~EvRiaA~---~~lm~~~ 588 (618)
T PF01347_consen 520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE----ILLPIFMNTTE-DPEVRIAAY---LILMRCN 588 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH----HHHHHHH-TTS--HHHHHHHH---HHHHHT-
T ss_pred ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH----HHHHHhcCCCC-ChhHHHHHH---HHHHhcC
Confidence 2344444444444 48899999999999999998877654 22334444333 344899864 4455543
Q ss_pred ccchhHHHHHHHh
Q 000050 2589 RGSEYIQGAQKFI 2601 (2622)
Q Consensus 2589 ~~~~~~~~~~~~l 2601 (2622)
......+.+...+
T Consensus 589 P~~~~l~~i~~~l 601 (618)
T PF01347_consen 589 PSPSVLQRIAQSL 601 (618)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3334445554444
No 199
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.04 E-value=9.1 Score=47.45 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=134.0
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHH----hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE----HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~----~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 1732 (2622)
.+...|.++|...-+..+-..+......+....|.+.+. -..|.++..+....-.||...+..+......+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 344567777776666777778888888899999988663 2356677777777889999999999988888899999
Q ss_pred hhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000050 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2622)
Q Consensus 1733 p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~ 1812 (2622)
|.+..++..++.++.|+..++.+.+...+..+...++.+. +...+...+- .+...|..++..+..-+ +....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l---~~~~~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRL---PKFQN- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhC---Ccccc-
Confidence 9999999999999999998888888888888887776652 3333333222 23456777776655432 21110
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000050 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2622)
Q Consensus 1813 ~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2622)
++.....+ .....++.+ -.-++.+++.++.|.+.-|++.+++.+-.-.
T Consensus 206 -------~~~~~~~~----~~~~~~~~~-~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 206 -------DELSLSSE----EQEYCLGPD-PGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred -------cccccchH----HHHHhcCCC-ccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 00000000 112223321 2246778888899999999999988875443
No 200
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=91.98 E-value=41 Score=42.08 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccc--cCChhHHHHHHHHHh-hhccCChhHHHhHHHHHHHHHhhhhhc
Q 000050 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI--SMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLHQIQS 2506 (2622)
Q Consensus 2430 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i--~~~~~~~~i~~~l~~-~~~~~~~~ir~~a~~alg~ll~~~~~~ 2506 (2622)
+++.+..|+.+++.......+++++.+.+....-+ .+.++...+++.+.. +-.+++.....++..|+..+..--.++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 66677788888776655556677776665433322 345566677777665 667778888888999999876543322
Q ss_pred CCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2507 GPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2507 ~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
... ....+....+..++..++-|-...+-.++-+..
T Consensus 396 a~~---~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 396 AHF---APAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hhc---cccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 110 112233344444555566665555555554433
No 201
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=91.84 E-value=51 Score=42.89 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=139.3
Q ss_pred HHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC-ch-HHH
Q 000050 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQL 2314 (2622)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-~~L 2314 (2622)
.|..++.-+...++..++.++..............+...+...+....+.+....++.+|+.+++.-+ ++. |. ...
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~ 186 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADG 186 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccC
Confidence 44556677778888888888754331111112222333444555433345566667788887765321 111 00 012
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHHHHhccc------ChhhHHHHHHHhhhcCC-HhHHHHHHHHHHHHHhhcCCC--
Q 000050 2315 QTTFIKCLQDS--TRTVRSSAALALGKLSALST------RVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHAGKS-- 2383 (2622)
Q Consensus 2315 ~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~------~~~~ll~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~-- 2383 (2622)
...+...|+.. +..+--.+..|+-.|. +.+ .-..+++.++..++... ..+-.-++..|+.++......
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccch
Confidence 23333344331 4455556666665542 111 11357777888776543 445555677888888754211
Q ss_pred ---CChHHHH-HHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhcCc-hHHHHHHHHHH----hhcCCCCchhhHhHHH
Q 000050 2384 ---VSSAVKI-RVYSVLKDLVYH---DDDHVRVSAASILGIMSQCMED-GQLADLLQELL----NLASSPSWAARHGSVL 2451 (2622)
Q Consensus 2384 ---~~~~~~~-~i~~~L~~~l~~---~~~~vr~~aa~~Lg~L~~~~~~-~~~~~~l~~ll----~~~~~~~~~~r~~~~~ 2451 (2622)
....... .+...+. .+.. .|+++.......-..|-..... ..+.++..++. .|.+...... +
T Consensus 266 ~~~~~~~mv~~~l~~~l~-~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~--F--- 339 (429)
T cd00256 266 KKTAALQMVQCKVLKTLQ-SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK--F--- 339 (429)
T ss_pred hhhHHHHHHHcChHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch--H---
Confidence 1111122 2223332 2332 3566655443333333322211 01344444432 2321111000 0
Q ss_pred HHHHHHhhCCccccCChhHHHHHHHHHhhh-ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHh---HHHHHHhhcCC
Q 000050 2452 VFATFLRHNPSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHD 2527 (2622)
Q Consensus 2452 ~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~l~~~l~d 2527 (2622)
=+++...+.+.++ +++..|.+.+ .++++..-.-|-.=+|.++.+.... +.+.+ .=..+++.++|
T Consensus 340 -----W~EN~~kf~~~~~--~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----r~i~~~lg~K~~vM~Lm~h 407 (429)
T cd00256 340 -----WRENADRLNEKNY--ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----KDVVEQLGGKQRVMRLLNH 407 (429)
T ss_pred -----HHHHHHHHHhcch--HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----HHHHHHcCcHHHHHHHhcC
Confidence 0111122212221 4556666665 3455555555556677777775311 11211 22457778889
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 000050 2528 DSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2528 ~s~dvr~~a~~~l~~~a~ 2545 (2622)
++++||..|+.++..+--
T Consensus 408 ~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 408 EDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999987743
No 202
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=44 Score=42.10 Aligned_cols=352 Identities=13% Similarity=0.152 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---HhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM---SQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1398 ~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~---~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
.|+..+-.+++...-...-.-.+++..+++++.-.+...--....-++.+. ++-....-..++..++..+..+....
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 566666667765543233333567788888886555444333333332221 11111122456677777777777888
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh---hHHhHHHHHHhhc-CCCC
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGL-TDPN 1550 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ilp~Ll~~l-~d~~ 1550 (2622)
+...+.++..+++...-.-.-.-..++|.+..++++.+. ...|...|-.+.-.-.-+ .+...++.+.+.+ ...+
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~ 439 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTG 439 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999998888754332222235678888888876432 122333333322100000 1234455555543 2222
Q ss_pred hhHH-----HHHHHHHhcccccc-CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC-CcccchHhhhHHH
Q 000050 1551 DHTK-----YSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPE 1623 (2622)
Q Consensus 1551 ~~~r-----~al~~L~~~~~~~~-~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~l~~~l~~ll~~ 1623 (2622)
..+. .|+.......-..- .....+..+ +.+.++.+++- ....+.++...-+.. ..+..|...+...
T Consensus 440 ~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~L---M~ra~k~~D~l----LmK~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 440 SEVDLALIALCINLCLNKRNAQLVCEGQGLDLL---MERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred ceecHHHHHHHHHHHhccccceEEecCcchHHH---HHHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 2222 23332222111110 111222222 22333333321 223334444321110 1233444443332
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCCh-HHHHHHHHHHHHHHHHhchhHH-
Q 000050 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTVYF- 1694 (2622)
Q Consensus 1624 L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~-~~r~~a~~~L~~i~~~~g~~~l- 1694 (2622)
+. .|.+.. -..+|+|.++...-.+ .-..++||+...|+..... .........+|.++....-..+
T Consensus 513 ~~---nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Ll 586 (791)
T KOG1222|consen 513 AK---NDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLL 586 (791)
T ss_pred hh---cCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHh
Confidence 22 133333 6788999988743332 1246889998888754322 1223344445555443322222
Q ss_pred --HhHhHHHHHhccC---CChhhHHHHHHHHHHhhhh-hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000050 1695 --EHILPDIIRNCSH---QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1695 --~~llp~l~~~l~~---~~~~vR~~al~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv 1765 (2622)
..+++.+++.++. .+..|- ..+..|-.+... ....+.---...-..+...+.|.++.||+.+-.++..+.
T Consensus 587 a~a~~i~tlieLL~a~QeDDEfV~-QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQEDDEFVV-QIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIA 662 (791)
T ss_pred CccccHHHHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3466666665543 333333 223333333222 111110000112224566777889999998877776554
No 203
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.76 E-value=1.8 Score=55.01 Aligned_cols=75 Identities=31% Similarity=0.408 Sum_probs=53.3
Q ss_pred CcccchHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHHHhhhcCC-hHHHH
Q 000050 1611 KDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNS-NVERS 1676 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~----------d~~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~~L~~~~~-~~~r~ 1676 (2622)
-.+.+|+..++|.++.++. +.+|.+|..|+..++.+++.++..+ .+.++..+.+.+.+... ....-
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 3478999999999998873 4679999999999999999998763 23444444445544432 33356
Q ss_pred HHHHHHHHH
Q 000050 1677 GAAQGLSEV 1685 (2622)
Q Consensus 1677 ~a~~~L~~i 1685 (2622)
|+..+|+.+
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 777777654
No 204
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=91.50 E-value=22 Score=48.26 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=70.9
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh--hcHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHH-hhcc--c
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFY-KNSK--L 2145 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~--~~l~~l--l~~Ll~~l~d~~~~vR~~A~~~L~~l~-~~~~--~ 2145 (2622)
..-+|..+.++...++.++..+...+.++...-.. ..+..+ ++.|+..+.+.+.+++..||.++..+. .... .
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 33456666667677777777777777666532111 112222 667888889999999999999999884 3332 1
Q ss_pred cccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000050 2146 YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2146 ~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
.+.-...+=++.++.++. -.|.+|++.....|.+|...
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 121111223455666665 36888999998888888654
No 205
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.35 E-value=4.6 Score=53.74 Aligned_cols=167 Identities=11% Similarity=0.129 Sum_probs=110.5
Q ss_pred hHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000050 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~ 1654 (2622)
.+.|.|...++- .+.++.....+-+..+.+.. .+++ +.+.++|.|...+++.+..+++.+...++.+++.+.-..
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt-~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~ 424 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT-PPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF 424 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC-ChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence 455666555542 23344444444444455543 2223 567899999999999999999999999999999876432
Q ss_pred -chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1655 -FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1655 -~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
-..++|.+...........++..+..|++.+++.+..-..-+.++.+.+..+..++.+.-+...++..++......-.-
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev 504 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV 504 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee
Confidence 3567787766655555566788888999999876665544445556677777788888888888888777554331111
Q ss_pred hHHhHHHHHHhhc
Q 000050 1734 YLQQVLPAILDGL 1746 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L 1746 (2622)
....++|.+....
T Consensus 505 ~~~~VlPlli~ls 517 (700)
T KOG2137|consen 505 MAENVLPLLIPLS 517 (700)
T ss_pred ehhhhhhhhhhhh
Confidence 2244666655543
No 206
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.31 E-value=4.7 Score=51.84 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhh
Q 000050 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2622)
Q Consensus 1864 A~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~----------s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~ 1930 (2622)
.+++..+|..|..-.+.+|+..++|.++.|+- +.+|..|-.|+..+..++...+.. ..+.+..++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34555566666555567888888888887754 346789999999999999988765 35778888888
Q ss_pred hcCCC--ChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhc
Q 000050 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1931 ~L~d~--~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
.+.|. ......|++.+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 87764 5778889998888764422222223334444444444443
No 207
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.15 E-value=38 Score=40.78 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=124.3
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHH
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~L 2354 (2622)
.|+-.++...+++.....+.+|..++.... .-.|...+++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344446666688889999999999887542 3356666776666666677777777777777777677665677766
Q ss_pred HHhh--h------c--CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
+... + + ...+...+...+++.++...+. ....++..+...+ .+.++..+..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 6551 1 1 1245556666788888876544 3345566666666 67788888888888888884322
Q ss_pred chHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccC----ChhHHHHHHHHHhhhccCChhHHHhHHH
Q 000050 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREASTK 2494 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~----~~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2622)
- ++.+...-+...+..+. |-.....+..++.--|..-.+ ..+...++..+++...+.+......+..
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~ 225 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTS 225 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHH
Confidence 1 23344443444332222 323333444444333322221 2355678888888877776543333333
No 208
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.09 E-value=4.1 Score=47.71 Aligned_cols=149 Identities=17% Similarity=0.271 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l-~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
.+-+++..+..|.+..+...|.+|..+|.. .-|..++.++ ++.++.+.+ ++-+|-..-...++.+..+...-.-.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 344666667777665556677777766532 2233333222 223333222 22223333333444444444444445
Q ss_pred chhHHHHHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhcHHhH---HhhHHHHHhhc-c-CCChhhHHHH
Q 000050 1414 FEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQGV---KLVLPSLLKGL-E-DKAWRTKQSS 1478 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l------~D~~~----~VR~aa~~al~~i~~~l~~~~v---~~ilp~Ll~~L-~-~~~w~~r~~a 1478 (2622)
..||+.+++|.++.|+ ++++. .+|+-|+..++.++++++.... .++.-.+++.+ + .+...+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7899999999999875 23332 4999999999999988765421 23333344432 2 2345677888
Q ss_pred HHHHHHHHh
Q 000050 1479 VQLLGAMAY 1487 (2622)
Q Consensus 1479 ~~~L~~la~ 1487 (2622)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888876654
No 209
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=1.1e+02 Score=44.89 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=84.8
Q ss_pred hhhHHHHHH-HhcCCCHHHHHHHHHHHHHHHhh--hC--CCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh
Q 000050 1618 GLLLPEVKK-VLVDPIPEVRSVAARAIGSLIRG--MG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1618 ~~ll~~L~~-~L~d~~~~vR~~a~~aL~~L~~~--~g--~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
+.++..+.. ...+..|.+|.++.+.+..++-. ++ +...+++-..+...+. +..-.+|..++.+++.+..+.-..
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhccccc
Confidence 345555553 33456899999999998887652 22 2234455544545554 433458889999998877643222
Q ss_pred HHHhHhHHHHHhc--cCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000050 1693 YFEHILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1693 ~l~~llp~l~~~l--~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
............. ...+.....++...++.++-.++-.+--+++..+..+-....+. ..++.++-+++..+-..
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHH
Confidence 1111111111111 12344556788999999999887655445555555444444443 55676666666555443
No 210
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.64 E-value=11 Score=50.37 Aligned_cols=167 Identities=17% Similarity=0.141 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
.+++.+...+...+....+.--..-+..+.+....+.+. ..+++.|....++. +...++.++..+..+++.+. .+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~-~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~ 423 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVK-EKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VP 423 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHH-HHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HH
Confidence 445555555443333334444444455566666666664 37999999988887 78899999999999999887 23
Q ss_pred HHH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1417 YVI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1417 ~v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
.+. .++|.+.. ++...+..|+..+..|+..+++.+....+-..++.++......+.....+.+.+...++...+....
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 333 46777655 4567789999999999999999998888777777788888777788888877777776665444211
Q ss_pred hhhhhhHHHHhhhh
Q 000050 1495 QCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L 1508 (2622)
.....++|.+..+.
T Consensus 504 v~~~~VlPlli~ls 517 (700)
T KOG2137|consen 504 VMAENVLPLLIPLS 517 (700)
T ss_pred eehhhhhhhhhhhh
Confidence 11234455544444
No 211
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.58 E-value=8.4 Score=53.42 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=92.5
Q ss_pred HHHHHHHHHhh--cCchHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHhh-CCccccC-ChhHHHHHHHHH----hhh
Q 000050 2411 AASILGIMSQC--MEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRH-NPSAISM-SPLFLSILDRLK----SSL 2481 (2622)
Q Consensus 2411 aa~~Lg~L~~~--~~~~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~~-~~~~i~~-~~~~~~i~~~l~----~~~ 2481 (2622)
++..+..+... .|..++.+.+.+++.. ...+....+.++.+++..++.. +-..-.. ....+++.+.+. +..
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 34444444333 3444444434344331 1122334556677777777642 2111000 112233444444 333
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHH
Q 000050 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPA 2561 (2622)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~ 2561 (2622)
...+...+...+.|+|.+-. | .....+.+++.+-...+..+|.+|+.+++.++..+|..+++.+- +
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~------~----~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~----~ 521 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGH------P----SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL----P 521 (574)
T ss_pred hcCCchheeeHHHhhhccCC------h----hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH----H
Confidence 44566677788999996421 1 12334444444444567899999999999999999988765332 2
Q ss_pred HHhhhcCCcchhhchhHHHHHHHhcccccchhHHHHHHHh
Q 000050 2562 LAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2622)
Q Consensus 2562 l~~~~~~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l 2601 (2622)
+|... ..+..||.| |+..+++.......++.+.+.+
T Consensus 522 i~~n~-~e~~EvRia---A~~~lm~t~P~~~~l~~ia~~l 557 (574)
T smart00638 522 IYLNR-AEPPEVRMA---AVLVLMETKPSVALLQRIAELL 557 (574)
T ss_pred HHcCC-CCChHHHHH---HHHHHHhcCCCHHHHHHHHHHH
Confidence 33222 245558887 4555556533344555555555
No 212
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.48 E-value=56 Score=47.76 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=60.1
Q ss_pred hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHH
Q 000050 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAER 2579 (2622)
Q Consensus 2514 l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~ 2579 (2622)
+.+++...+....+++...|..|+..+..+...-++.+.+++++++|.|-+.+.|.+..|...+-.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 677777888888889999999999999999999999999999999999999999999999877665
No 213
>PF05536 Neurochondrin: Neurochondrin
Probab=89.98 E-value=91 Score=42.51 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=90.9
Q ss_pred chhhHHHHHHHHccCCH-HHHHHHHHHHHHHHhhcChhhhhhhh-hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcC
Q 000050 2227 LQPLLPIFLQGLISGSA-ELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~-~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2622)
+-.-+|.|++.+.+++. +.-..+..||..++ .++ +.-+..+ ...++.|.+++.+ .......++..+..++...+
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSP-EGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc
Confidence 44578999999988776 88889999999999 333 3333333 2334556666554 33456666666666665544
Q ss_pred CCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCC-
Q 000050 2305 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS- 2383 (2622)
Q Consensus 2305 ~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~- 2383 (2622)
....+--++ .+..+++.+-..+.......+-.+++-|..++...+..
T Consensus 172 ~~~~~~~~~--------------------------------~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 172 QKSWAEDSQ--------------------------------LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred hhhhhhhHH--------------------------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 211100000 01112222222222222334455566666666555311
Q ss_pred ----CChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhcCc
Q 000050 2384 ----VSSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2384 ----~~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
.++.....+...+...+.++ ...-|..+..+.+.+....+.
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 23456677777777777765 566777777777777766554
No 214
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.93 E-value=2.3 Score=47.27 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhhHHHHHhhccCCChhh
Q 000050 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
+.|++.+++|.++.-.. |.--.+|++|.+++..+.+..... .+..++..+..+|.+ +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45677888898887543 223589999999999998865443 467789999999988 8899
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhc----CC--------CHHHHHHHHHHHHHHhhhc
Q 000050 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2622)
|.-+...+..++..+|..+...+..+++.+...|+ +. ..+...++.+++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999888774 21 2334445566666664444
No 215
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.77 E-value=13 Score=45.81 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---C-chhhHHHH
Q 000050 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N-FPDLVSWL 1662 (2622)
Q Consensus 1587 d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~-~~~ll~~L 1662 (2622)
+.+.+.|..|.+-+..+++.+....++.++ . .+..+...+++.+..+|+.|+..+|+.+..-+.. . -...++.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~-g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISL-G-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhc-c-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 346788888888888888776554444433 2 3334444889999999999999999999865432 1 12367788
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHHhch--hHHHhH--hHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHH
Q 000050 1663 LDALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHI--LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2622)
Q Consensus 1663 l~~L~~~~~~~~r~~a~~~L~~i~~~~g~--~~l~~l--lp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~ 1736 (2622)
+..+.++.+..+|..+..+++.+++.... ..+-.+ ...+...+++ .+...+.-++.++..+...-..+-.-.-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 88888877777888999999888875432 222110 2233444444 45566677777777776543321110001
Q ss_pred hHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 000050 1737 QVLP-AILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2622)
Q Consensus 1737 ~ii~-~ll~~L~d~~~~VR~~al~al~~lv~~~~~ 1770 (2622)
..++ .+.....-.+.++++.++.+.-..+..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 1111 122222333456777777776665554433
No 216
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.77 E-value=1.8 Score=43.14 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhH
Q 000050 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2622)
Q Consensus 2113 ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2622)
.+...+..+.|+.+.+|..++..|..+.+... ......+.++..++..+.|+|+-|.-+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556667789999999999999999987654 23345688899999999999999999999999999998887776666
Q ss_pred HHH
Q 000050 2193 IKV 2195 (2622)
Q Consensus 2193 v~~ 2195 (2622)
++.
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 554
No 217
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.73 E-value=17 Score=46.67 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH----hhChhh
Q 000050 1884 PVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQ 1958 (2622)
Q Consensus 1884 ~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~----~~~~~~ 1958 (2622)
+.+...+...+. +.++........+++..+..++..+-+.++..+.+++.++.+.+|..-+..+++++. ......
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 344444444444 578888889999999888888677788999999999999999999999999999876 222233
Q ss_pred HHHhHHhHHHHHHHHhcCCcH
Q 000050 1959 LLSFMDELIPTIRTALCDSIL 1979 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~ 1979 (2622)
..++++.++..+.+....+.+
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~ 121 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQ 121 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344555555555555555433
No 218
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=88.69 E-value=7 Score=48.47 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=108.5
Q ss_pred HHHHHHHh-hcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHhC
Q 000050 2251 LGLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ 2323 (2622)
Q Consensus 2251 ~~L~~l~~-~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~l~~L~~~llk~L~ 2323 (2622)
..+..++. ..+...+..+..-+++|++.++.|. +..+|...+.+|..++.+.+... + ...+.+.+.+.+++.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 34444444 6666778888899999999999885 88999999999999998876543 1 224556777777876
Q ss_pred --------CCCHHHHHHHHHHHHHHHhc------cc---ChhhHHHH-HHHhhh-cC---CHhHHHHHHHHHHHHHhhcC
Q 000050 2324 --------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAG 2381 (2622)
Q Consensus 2324 --------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~ll~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g 2381 (2622)
+.+..+=..|..|+-.|... .+ ..+.++.+ +++.+. .. ...++...++.+..++...|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45667777888888887443 12 24445544 555542 22 37888999999999999888
Q ss_pred CCCChHHHHHHHHHHHHhhcCC
Q 000050 2382 KSVSSAVKIRVYSVLKDLVYHD 2403 (2622)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~ 2403 (2622)
... ..+.++++..+.+.+.++
T Consensus 257 i~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 257 ISS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred cHH-HHHHHHHHHHHHHHhcCC
Confidence 754 578888888888777664
No 219
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.68 E-value=6.1 Score=50.29 Aligned_cols=115 Identities=21% Similarity=0.311 Sum_probs=80.8
Q ss_pred cCchhhHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhc-----C----CCCHhh
Q 000050 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG-----D----RFPWQV 2288 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~-------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~-----~----~~~~~v 2288 (2622)
.++.+++|-|.+.+.++ +...-...+.++..+...-. =.+.||+-+++++++.++- . ..+|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 35556666666554432 23333445566666666544 4678999999988886652 1 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 000050 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2622)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L 2340 (2622)
|..|...|+.++++.+.......|.+..++.+.|.|+ .....--|..+|+.+
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999999999999999887777789999999999987 344456666666544
No 220
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.30 E-value=3.3 Score=41.37 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=66.2
Q ss_pred HHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH
Q 000050 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429 (2622)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2622)
.+.+.+..+.++...+|...+.-|+.++.+.. ......+.++.++...+.|+|+-+.-+|..++..|+...|+..+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 35566777777778888888888888887655 2345678899999999999999999999999999999999755555
Q ss_pred HHHHHH
Q 000050 2430 LLQELL 2435 (2622)
Q Consensus 2430 ~l~~ll 2435 (2622)
+++.+.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 555443
No 221
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=87.71 E-value=37 Score=46.15 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=99.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-------~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2622)
.++..-..+++..++...-+++.-++..+.-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 34444344555555788888888888888866553 444443 3568999999988888888888999988776
Q ss_pred hcHHhH--HhhHHHHHhhccC------CChhhHHHHHHHHHHHHhhCchhhhhhhh-hhHHHHhhhhcC-CCHHHHHHHH
Q 000050 1451 LSAQGV--KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTD-THPKVQSAGQ 1520 (2622)
Q Consensus 1451 l~~~~v--~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l~~~L~-~ivp~L~~~L~D-~~~~VR~aA~ 1520 (2622)
.....+ +..+|.|++.|-+ -.|.+-...|..|..|....+..-...+. +-++.|..+... .++++-++|.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 655533 7788999988854 24788888888888887543332222221 233444444433 3567777777
Q ss_pred HHHHHHhh
Q 000050 1521 TALQQVGS 1528 (2622)
Q Consensus 1521 ~aL~~l~~ 1528 (2622)
.-|..+..
T Consensus 677 ~vL~~lW~ 684 (717)
T KOG1048|consen 677 SVLDVLWQ 684 (717)
T ss_pred HHHHHHHH
Confidence 77776653
No 222
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.49 E-value=4.9 Score=41.55 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~---~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
.++..+.+.+.+ +++...|..++.+++.+.+..|..+.++..+++-.+...+..+ .+|+.|..+...++..+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 355555666655 5577888899999999999666655566666666666666555 89999999999999999988
Q ss_pred hHHhhHHHHHh
Q 000050 1455 GVKLVLPSLLK 1465 (2622)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2622)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 223
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.15 E-value=1.2 Score=49.67 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.9
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHh---c
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2622)
....+|.|.+||...+-.-|-.|-.++.++....+ +.+-|.+++++.||-+.+..+ +.++....|.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999998887888889999999998887 788899999999999999875 888999999999887763 5
Q ss_pred CCCccCchHHHHHHH
Q 000050 2304 GIALKPFLPQLQTTF 2318 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~l 2318 (2622)
|..+-||..||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 678889999988865
No 224
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=2e+02 Score=42.54 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHH
Q 000050 2109 GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2622)
Q Consensus 2109 ~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~ 2175 (2622)
.++++...++...+++++..|..|+..+..+....+..+...+++.+|.|-++++|.+.+|-..+..
T Consensus 1538 d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1538 DLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999888655544
No 225
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=86.51 E-value=78 Score=45.76 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=51.5
Q ss_pred HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hhHHHHHHhhhcCCcchhhchhHHHHHHHhccc
Q 000050 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2622)
Q Consensus 2515 ~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~ 2588 (2622)
..+|+.+++.|++.+..|--.++-.|+.+.-++|.. ..+| ...+|.+.+.+..++--+-.-+-.|+--++.-+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 357888899999999888888888888888888764 2333 447899999988887555444444444444433
No 226
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.51 E-value=11 Score=46.66 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=97.8
Q ss_pred CCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhh---h----cCCh
Q 000050 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2622)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~---------~~~ll~~Ll~~L~---~----~~~~ 1672 (2622)
+...+..+++-++|.+..+++|..+.+|..+..++..+...++... .+-+.+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 2223333444443 1 1222
Q ss_pred HHHHHHHHHHHHHHHHhc---h----hHHHhHhHH-HHHhccC----CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1673 ~~r~~a~~~L~~i~~~~g---~----~~l~~llp~-l~~~l~~----~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
..-..+..++-.++.... . ..+.+++-. ++..+.. +.+.++...+..+..+...+|.....|+..+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344455555544321 1 123334333 5555443 248899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000050 1741 AILDGLADEN 1750 (2622)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2622)
.+.+.+.+.+
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999887754
No 227
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=86.42 E-value=23 Score=46.43 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=133.9
Q ss_pred hHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC---c
Q 000050 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH-VRVSAASILGIMSQCME---D 2424 (2622)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~-vr~~aa~~Lg~L~~~~~---~ 2424 (2622)
.++..|+..+.++|+.-|..+...|..+..+....- .-.+..+...+.+.+.+.+.- --.-..+.+|.+...+. .
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r-~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLR-SFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTH-HHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 577788888888888888888888877776643321 334555566665555443211 11223445555554332 1
Q ss_pred hHHHHHHHH-HHhhcCCCCchhh-HhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2425 GQLADLLQE-LLNLASSPSWAAR-HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2425 ~~~~~~l~~-ll~~~~~~~~~~r-~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
++...++.. ++.....+....- .....++...+...| .+...++..+..+|-..++.-....+.-+..++..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp------~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP------SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G------GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Confidence 234445544 3444444443221 123345555555544 34567888888888777776666677777777776
Q ss_pred hhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhh----hhhHhhHHHHHHhhhcCC-cchhhchh
Q 000050 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI----MVHVALFGPALAECLKDG-STPVRLAA 2577 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v----~~~l~~l~p~l~~~~~~~-~~~vk~aa 2577 (2622)
..+. ++.+....+...+..++++.+..|-..|+...+.-.-. ..+ ...++.+.|+|++..+.. |..||..|
T Consensus 286 ~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~--~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 286 LPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL--SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH--HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH--HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5432 12244566777888889999999988888765421100 112 223455666666655544 99999999
Q ss_pred HHHHHHHhcccc
Q 000050 2578 ERCAVHAFQLTR 2589 (2622)
Q Consensus 2578 e~a~~~~~~~~~ 2589 (2622)
..++--+.++-.
T Consensus 362 ~~vl~~l~~~d~ 373 (409)
T PF01603_consen 362 QNVLKILMEMDP 373 (409)
T ss_dssp HHHHHHHHTTSH
T ss_pred HHHHHHHHHhCH
Confidence 999888877654
No 228
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=25 Score=51.56 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~ 1958 (2622)
++.-+..+++.+..+++.+|..|...+.+++...... ++|....+..+...|.+..+|...-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444566777788889999999999999999776544 344445555567779999999999999998887765 56
Q ss_pred HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000050 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2622)
Q Consensus 1959 l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~ 1991 (2622)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999988887777665543
No 229
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.86 E-value=9.5 Score=39.50 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1897 SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1897 ~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
.+...|..+.++++++++..|+. +.|++.-.|...+..+ +.|..++.+-..++...+.+.+.+.+++++..+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999944433 3566666666666544 899999999999999999988888888887777654
Q ss_pred h
Q 000050 1974 L 1974 (2622)
Q Consensus 1974 L 1974 (2622)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
No 230
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.19 E-value=17 Score=47.70 Aligned_cols=110 Identities=16% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH--HHHHhcCCCcc
Q 000050 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALK 2308 (2622)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~ 2308 (2622)
+..++.....++..-...-..-+..+....+++.+.+....+..-+.+.+... +.+|-..|+..+. .+..-+ .
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li----~ 331 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI----S 331 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH----H
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH----H
Confidence 33333333334443333456778888888888888888888877777887764 7778777877765 223322 2
Q ss_pred CchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHhccc
Q 000050 2309 PFLPQLQTTFIKCLQD-----STRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2309 p~l~~L~~~llk~L~d-----~~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
.+-..+.+.+...+.. -|..||..|..++..+..+++
T Consensus 332 ~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 332 QNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp CTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred hChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 3334455555555433 389999999999999887664
No 231
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=83.91 E-value=1.1e+02 Score=36.94 Aligned_cols=49 Identities=12% Similarity=-0.039 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHhhcc-CCCchHHHHHHHHHHHHHH
Q 000050 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1754 R~~al~al~~lv~~~~~~~i~~llp~l~~~l-~d~~~rvR~~a~~ll~~ll 1803 (2622)
..+...+.+.++...+. ....+++.+...+ .+.+..++..+++.+..++
T Consensus 101 ~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 101 LISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 33444566666666555 4455777777777 6777778888888888886
No 232
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.70 E-value=19 Score=46.72 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=100.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC---CCHhhHHHHHHHHHHHHHhcCCC
Q 000050 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRKGGIA 2306 (2622)
Q Consensus 2230 ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~---~~~~vk~~al~~L~~L~~~~~~~ 2306 (2622)
.+.-+.+.++.+++..|..|+.+|.. ..|-..+-||+..++ -..+.-. .+-......+.....|++.-..+
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fI---ae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~ 281 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFI---AEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIF 281 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHH---hhheeeccccccHHHHHHHHHHHHHHhcCCccc
Confidence 45555666777888888888777654 444344555544332 2221111 13444555666666777776778
Q ss_pred ccCchHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHhc-ccChh----hHHHHHHHhhhcC--CHhHHHHH
Q 000050 2307 LKPFLPQLQTTFIKCL----------QDSTRTVRSSAALALGKLSAL-STRVD----PLVGDLLSSLQVS--DAGIREAI 2369 (2622)
Q Consensus 2307 l~p~l~~L~~~llk~L----------~d~~~~vR~~Aa~aLg~L~~~-~~~~~----~ll~~Ll~~l~~~--d~~vr~~~ 2369 (2622)
+.||+.+|++.++.|+ .|.++.+|.-|+..++.++.- ....+ .++..+...+.+. .....+.+
T Consensus 282 lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 282 LEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 9999999999998876 334688999999999988542 22222 2333444444443 46788888
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 000050 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 2403 (2622)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~ 2403 (2622)
+..|.++....-..+--+....++..+...+...
T Consensus 362 i~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 362 IAGLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 8888877654322221233344455554444443
No 233
>PF05536 Neurochondrin: Neurochondrin
Probab=83.59 E-value=1.9e+02 Score=39.54 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCCh
Q 000050 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW 1472 (2622)
Q Consensus 1394 ~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w 1472 (2622)
..+.-|+-.+.+++....-.-.+-+..-+|.++..+..... .+-+-|..++..++.. +.+-+
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~--~~G~~--------------- 134 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS--PEGAK--------------- 134 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC--cHhHH---------------
Confidence 44555666666666411111245566778888888765554 4444455555444311 11111
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChh
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH 1552 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~ 1552 (2622)
.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 135 -------------------aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~--------------- 177 (543)
T PF05536_consen 135 -------------------ALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE--------------- 177 (543)
T ss_pred -------------------HHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh---------------
Confidence 1111 2345555555555 66778888888887766543111000
Q ss_pred HHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC-C---CcccchHhhhHHHHHHHh
Q 000050 1553 TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKVL 1628 (2622)
Q Consensus 1553 ~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~L 1628 (2622)
....+..+++.+.+.+.......|-..+..++.+....+. + ..-....+.+...+...+
T Consensus 178 -----------------~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 178 -----------------DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred -----------------hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 0011112333333333333334555667777776654310 0 112235667778888887
Q ss_pred cC-CCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1629 VD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1629 ~d-~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
.+ ..+.-|..+....+.+....|.+
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 75 46788999999999999998865
No 234
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.82 E-value=18 Score=45.37 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=95.9
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhH
Q 000050 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSI 1924 (2622)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~l 1924 (2622)
++......+..||+.|+..+..+..+.|..+..++-.+++.+.....|.+..+|....+.+..++...... ..+-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 33445788999999999999999998888888788888899999999999999999999998877655443 34566
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
++.+..++....+++|..+...+.-++..+++........ +++.+...
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d~ 190 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKDV 190 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHHH
Confidence 7777778888899999999999998888776644433322 44444433
No 235
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=57 Score=39.48 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=55.6
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHhhhcCC----hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000050 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
.+++++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+....++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877766544 21 1224567777777776654 33333333321000001111222233
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 444444455555555566677777655
No 236
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.52 E-value=12 Score=38.52 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~---~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+..++.-.+...+.. ++.|..|..+...+...+++.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHH
Confidence 35555555555543 5677889999999999988766666666666666666754 479999999999999999887
Q ss_pred hHHhhHHHH
Q 000050 1455 GVKLVLPSL 1463 (2622)
Q Consensus 1455 ~v~~ilp~L 1463 (2622)
.+..++...
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 766555443
No 237
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.17 E-value=1.3e+02 Score=36.76 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=91.3
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHH
Q 000050 2393 YSVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFL 2471 (2622)
Q Consensus 2393 ~~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~ 2471 (2622)
++.+.++++| .+.++|..+-.|+.-|....+.+.... .|...+..+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs---------------------------------~IV~~gg~~ 331 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS---------------------------------TIVEKGGLD 331 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH---------------------------------HHHHhcChH
Confidence 3456667777 466778677666665554444322211 111122334
Q ss_pred HHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchh------hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2472 SILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV------VVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2472 ~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~------l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
.++..+..+. ++|.+...+..++..+..-. |+.... ..-.++.+-..+ ....|.|.+.+++|.++.
T Consensus 332 ~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP--~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 332 KIITLALRHS--DDPLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHP--VAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHH
Confidence 4444444332 45566666666666554432 221111 112233333332 245899999999999999
Q ss_pred hCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHH
Q 000050 2546 ANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 2584 (2622)
Q Consensus 2546 ~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~ 2584 (2622)
+..+.-.+.++.=++.|....+..+..++.+|-.|+-.+
T Consensus 404 rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 404 RSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 887776778888899999999999999998888887665
No 238
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=52 Score=47.25 Aligned_cols=217 Identities=17% Similarity=0.138 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHhhhHhhHhhhccch---HHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHhh----hCccchhhhcH
Q 000050 1310 NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGI 1379 (2622)
Q Consensus 1310 ~~~~~~Vq~~a~~~L~~lv~~~~~~~---~~~i~~Ll~~L~~~~---~~~~r~~Aa~~L~~l~~~----lg~~~l~~~~i 1379 (2622)
..+--+|+....+|+-.++...++.. -..+-+++..+.+.. +...-+.+..+|..+... ++.+.+. .+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~l 929 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DL 929 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HH
Confidence 34445777777788877777666532 122334444444432 223334455555555432 2233332 67
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh-------H--------------------HHHHHHHHHHHcCCC
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP-------Y--------------------VIQMLPLLLVAFSDQ 1432 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~-------~--------------------v~~ilp~ll~~l~D~ 1432 (2622)
++.+..+...+.|-+.--.|+-.|-.+.+.+.+.+.. | -.-++..+.++..|.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 7777777766656666667777777776655432111 1 113455666777899
Q ss_pred CHHHHHHHHHHHHHHHH----hhcHHhH----HhhHHHHHhhcc---CCChhhHH-------HHHHHHHHHHhhCchhhh
Q 000050 1433 VVAVREAAECAARAMMS----QLSAQGV----KLVLPSLLKGLE---DKAWRTKQ-------SSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1433 ~~~VR~aa~~al~~i~~----~l~~~~v----~~ilp~Ll~~L~---~~~w~~r~-------~a~~~L~~la~~~p~~l~ 1494 (2622)
.+.||..|.+++-+++. .+++..+ -.++-+++++-. -++|..+. ..+..++.++...++++.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999998877766 3444333 233333333221 13464433 367778888876666544
Q ss_pred hhh---------hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1495 QCL---------PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1495 ~~L---------~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
..+ ..++..+.....|.++++.-+|.++++.+..
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 321 2233334445568889999999998887754
No 239
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.60 E-value=1.3e+02 Score=38.86 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=141.2
Q ss_pred hHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHH-----HHHHhhc--CCCHHHHHHHHHHHHHHHhh
Q 000050 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS-----VLKDLVY--HDDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~-----~L~~~l~--~~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
.+.+.+...+-+.+.++|.+.++.++.++... .....+.. ++...+. ...+.-|..|.+.+..+...
T Consensus 25 ~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~------~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 25 FFGERIQCMLLSDSKEVRAAGYRILRYLISDE------ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH------HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 34455554443344889999999999988642 12222221 2222222 23566788999999888776
Q ss_pred c--CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHH
Q 000050 2422 M--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 2499 (2622)
Q Consensus 2422 ~--~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~l 2499 (2622)
. +.+--..+++.+..-....+...|..+..++..+.-.+|+.+...+....+.+.+.+ ....+.+..+.++-++
T Consensus 99 ~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 99 KKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSISESLLDTLLYL 174 (371)
T ss_pred cCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHH
Confidence 2 221122344444443344555567778889999999999888766665555555554 3334666666666666
Q ss_pred HhhhhhcC-CCCchhhHhHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---hhhHhhHHHHHHhhhcCCc
Q 000050 2500 LLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI---MVHVALFGPALAECLKDGS 2570 (2622)
Q Consensus 2500 l~~~~~~~-~~~~~~l~~~l~~l~~~----l~d~s~-dvr~~a~~~l~~~a~~~~~~v---~~~l~~l~p~l~~~~~~~~ 2570 (2622)
+.....+. .-..-++..+++++... .++++. +--+.+..++.++-+.-|-.+ .+-. .-+..+...++.++
T Consensus 175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~ 253 (371)
T PF14664_consen 175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPN 253 (371)
T ss_pred hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCC
Confidence 66643321 11113455666666665 333332 355666777777776544432 1111 34677888888999
Q ss_pred chhhchhHHHHHHHhccccc
Q 000050 2571 TPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2571 ~~vk~aae~a~~~~~~~~~~ 2590 (2622)
..+|.+...-+..+|++...
T Consensus 254 ~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 254 PEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999884
No 240
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.47 E-value=13 Score=46.48 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=91.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccch---hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHh
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ 1965 (2622)
.++..+...+..+|..|...+.++........ +..+++-+.....|.+..+|.+....+..++-..+++.+.++..-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 34455688899999999999999987744332 345556666677899999999999888887777777778889999
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1966 ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
+++.+..++....+++|..+...+..+...+++...
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 999999999999999999999999998887766443
No 241
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.29 E-value=1.1e+02 Score=45.41 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=86.5
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHH----HHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccc
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES----LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~----ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~ 2148 (2622)
+.-+..+++.+...|+..+..+...+..++...+.+.... ......+...|.+..+|..+...+..+....+..++
T Consensus 40 dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 40 DSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556677778888899999989888887655443333 334455556799999999999999999888888999
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~ 2182 (2622)
+|+..+++...-...|.+..|-.+|...+.....
T Consensus 120 p~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 120 PFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 9999999999988889998888888777776554
No 242
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=80.31 E-value=1.7e+02 Score=36.78 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=133.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHH
Q 000050 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2622)
Q Consensus 2116 ~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2622)
.+++..+. +...++.|.+.++.++++.+ ....+.+.+-+.+++|.|..||..|..-|-.+++. +.++.+...
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~ 100 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDV 100 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHH
Confidence 34444443 34556778889999998654 23345666777788899999999888777777654 566666666
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhh-hhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-PITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-~i~~ 2274 (2622)
+.|.++...-. -|+.....++..+|+.+..-|..=+.-.+.+-+..-+. .|+.
T Consensus 101 l~qLLnk~sl~--------------------------~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~ 154 (460)
T KOG2213|consen 101 LVQLLNKASLT--------------------------GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVD 154 (460)
T ss_pred HHHHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHH
Confidence 66666532211 01111111345555555444433332233233322221 1112
Q ss_pred HHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHH---HH---HHH--hCCCCHHHHHHHHHHHHHHHhc---
Q 000050 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT---TF---IKC--LQDSTRTVRSSAALALGKLSAL--- 2343 (2622)
Q Consensus 2275 ~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~---~l---lk~--L~d~~~~vR~~Aa~aLg~L~~~--- 2343 (2622)
-.-..+.|- +.+--..-+..|+.+-.-.+ ..+ -.+|++ .+ ... +.-++...-.+-..|+-.-+-+
T Consensus 155 eikkal~dV-tgeef~lfm~~L~~lk~~~~--k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFar 230 (460)
T KOG2213|consen 155 EIKKALEDV-TGEEFTLFMDILASLKSLQT--KAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFAR 230 (460)
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHhhhcccC--CCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhc
Confidence 222233332 22222222222222211000 001 011211 11 111 2223455555555555443211
Q ss_pred ccChhhHHHHHHHhh--hcCC---HhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q 000050 2344 STRVDPLVGDLLSSL--QVSD---AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILG 2416 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l--~~~d---~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg 2416 (2622)
+..-..++.-+...+ ...+ .+.+-..|++|+|+.............++|+++|.+.+--+ .+......++|+-
T Consensus 231 gapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvECll 310 (460)
T KOG2213|consen 231 GAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLL 310 (460)
T ss_pred CCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHH
Confidence 111123444444332 1122 56777899999999876533222456788888888776543 4556667788887
Q ss_pred HHHhhcC
Q 000050 2417 IMSQCME 2423 (2622)
Q Consensus 2417 ~L~~~~~ 2423 (2622)
.+.+.++
T Consensus 311 y~~h~Lg 317 (460)
T KOG2213|consen 311 YALHHLG 317 (460)
T ss_pred HHHHHHh
Confidence 7665443
No 243
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=80.01 E-value=2.7e+02 Score=38.96 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=66.7
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhhe-eeecC-CchHHHHHH--------HHHHHh-cCCCCCC
Q 000050 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW-IAVHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2622)
Q Consensus 1062 ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~la--------~~~w~~-~~~~~~~ 1130 (2622)
.++..+|+|+..++.||++|.+.... -.|...+. +.... .+-..|-.| .++|++ ++....+
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~q--------~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEKQ--------HGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhcc--------ccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 56888999999999999999875322 12332221 11111 222233332 368986 4433333
Q ss_pred C----h-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Q 000050 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSL 1175 (2622)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~ 1175 (2622)
+ + ..++..+-+.+....-..|+|++.++. .+|+-|++++..|.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 3 3 667777766666676688999988886 5777777777777654
No 244
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.47 E-value=2.9 Score=34.68 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.4
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
...+|.|.+++.+.+++|++.|+++|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999986
No 245
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.28 E-value=2.9e+02 Score=38.94 Aligned_cols=281 Identities=19% Similarity=0.204 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh--------cHHHHHHHHHhhcCCC
Q 000050 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDN 2124 (2622)
Q Consensus 2053 ~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~--------~l~~ll~~Ll~~l~d~ 2124 (2622)
...+++.+++..|..|.+.+-..+=+++..+.++++.++..+..|+..+...++-. ..+-++..+-..++..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 34677888888899999988877777788888889999999988888888765432 1333444444444432
Q ss_pred ChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhh-HHHHHHHHHhhc
Q 000050 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTS 2203 (2622)
Q Consensus 2125 ~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-lv~~l~~~l~~~ 2203 (2622)
....| +-..+..+++.++....+++.++++.++..++.....-...-..-|-.+++...+.+... ++....+.....
T Consensus 648 ~~s~~--~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~ 725 (1014)
T KOG4524|consen 648 GMSPR--VPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ 725 (1014)
T ss_pred CCCch--hHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 22222 233445556666666777788888887777763221111111112222222222111111 111111111100
Q ss_pred hhhhhhhhcCCccccccCC--C----CcCchhhHHHHH-HH----HccCC----HHHHHHHHHHHHHHHhhc-Chhhhh-
Q 000050 2204 RDKERRKKKGGPILIPGFC--L----PKALQPLLPIFL-QG----LISGS----AELREQAALGLGELIEVT-SEQSLK- 2266 (2622)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~--~----~~~l~~ilp~ll-~~----L~~~~----~~~r~~aa~~L~~l~~~~-~~~~l~- 2266 (2622)
... .. ..+|... + .+....+.|.+. .. +..+. ++.+.. .--+.=-..+ ++..+.
T Consensus 726 ~~k-----~l--~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~--e~edens~~~d~ep~~~~ 796 (1014)
T KOG4524|consen 726 STK-----VL--NELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREE--EVEDENSEYTDTEPILPD 796 (1014)
T ss_pred HHH-----Hh--hcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCC--CccccccCCCCCCCCCCh
Confidence 000 00 0010000 0 001111222221 11 11110 000000 0000000000 000111
Q ss_pred --hhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH---HHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000050 2267 --EFVIPITGPLIRIIGDRFPWQVKSAILSTLS---IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS 2341 (2622)
Q Consensus 2267 --p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~---~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~ 2341 (2622)
..+..|++.-+..|.+. +-.+|..+|.+|. .++...+..+-|.+.+.|+.++.++.+.++-+-..|..|+-.++
T Consensus 797 qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 797 QVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 12345566666777664 6778999998887 45566777788888899999999999999999999999999997
Q ss_pred hccc
Q 000050 2342 ALST 2345 (2622)
Q Consensus 2342 ~~~~ 2345 (2622)
...+
T Consensus 876 ~~sg 879 (1014)
T KOG4524|consen 876 KYSG 879 (1014)
T ss_pred HHhh
Confidence 7543
No 246
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.59 E-value=35 Score=35.25 Aligned_cols=92 Identities=18% Similarity=0.287 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1880 KEIMPVLMNTLISSLASS----SSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1880 ~~~l~~ll~~L~~~L~s~----~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
++++=.++..+-..+.+. ....|..+.++++.+++..|.. ..|++.-.|..++. .++.|..++.+...++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHH
Confidence 334444444444555543 4567889999999999977754 46777777777776 45699999999999999
Q ss_pred hhChhhHHHhHHhHHHHHHHH
Q 000050 1953 SAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1953 ~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
....+.+.+.+++++..+...
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHh
Confidence 988888887777777666554
No 247
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.51 E-value=99 Score=37.73 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=86.0
Q ss_pred hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccc---------------cccchhhhhhcCC-Cc--hHHHHHHHHHH
Q 000050 2000 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA---------------VLPHILPKLVHLP-LS--AFNAHALGALA 2061 (2622)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~---------------ilp~Lip~L~~~~-~~--~~~~~aL~sLa 2061 (2622)
.++.+-+-+++.|++....+.+++.+..+.....+. .+|.++..+.++. ++ .....+-..|+
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred CchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 345555666666666666566666655554322111 2334444444433 22 22222223333
Q ss_pred HHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 000050 2062 EVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2622)
Q Consensus 2062 ~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~ 2141 (2622)
..+...=.+.+..++..+.+.-. ....+.....+..+-..+.+++-..++..++..+.++-+-+|..+...+..+..
T Consensus 141 ~~a~~~~~~~La~il~~ya~~~f---r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 141 QVAEAQGLPNLARILSSYAKGRF---RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred HHHHhCCCccHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 33332223455556555554432 112222233333343444444445566667777777778888899998888887
Q ss_pred hccccccccHHHHHHHHHHHhcCC
Q 000050 2142 NSKLYLVDEAPNMISTLIVLLSDS 2165 (2622)
Q Consensus 2142 ~~~~~l~~~~~~il~~L~~~l~d~ 2165 (2622)
..... .++.++++..+.++++.+
T Consensus 218 ~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 218 HVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred cccCC-CCcchHHHHHHHHHhCCc
Confidence 65433 347788888888888653
No 248
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.30 E-value=2.7e+02 Score=37.40 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=84.4
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH-HhcccChhhHHHHHHHhhhcC
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS 2361 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~-d~~~~vR~~Aa~aLg~L-~~~~~~~~~ll~~Ll~~l~~~ 2361 (2622)
.++....+|-.+|..+.--.......++|.+++ .+. .|++.+|..|.-+||.+ ..+..-+|..-.-|...+.+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt----~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De 983 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLIT----SMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDE 983 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcch
Confidence 366788888888887654333333444554444 444 58999999999999998 456666777777788888888
Q ss_pred CHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000050 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2622)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2622)
+..||.+++-.+..++-..--++ ..+ +..+...+.|++.++..+|-..+..+++
T Consensus 984 ~~~V~rtclmti~fLilagq~KV-KGq----lg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 984 DADVRRTCLMTIHFLILAGQLKV-KGQ----LGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHHHHHHHHHHHHHHHccceee-ccc----hhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 89999999999988886432222 111 2223345667776666665544444443
No 249
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=76.78 E-value=2.9e+02 Score=37.61 Aligned_cols=354 Identities=16% Similarity=0.091 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHHHHHhh-hcCCh----HHH--HHHHHHHHHHHHHhchh-----HHH-hHhHHHHHh
Q 000050 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALK-SDNSN----VER--SGAAQGLSEVLAALGTV-----YFE-HILPDIIRN 1704 (2622)
Q Consensus 1638 ~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~-~~~~~----~~r--~~a~~~L~~i~~~~g~~-----~l~-~llp~l~~~ 1704 (2622)
+|..++-.++..-++..+..+++.+.+.+. +..++ ..| .++...++.+..-.... .++ -+++.++-.
T Consensus 389 aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 389 AALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 556666666666666679999999999883 22211 112 24455555555422111 122 234555555
Q ss_pred ccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhh-
Q 000050 1705 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVED- 1782 (2622)
Q Consensus 1705 l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~- 1782 (2622)
++++--.+|..++..+..+..-++. ...+..+.....+++.+.+-.|+..|..|+..++.+-... .+...+|...+
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 6677777788888887777555544 1335667788888888888889999988888876543211 12222222221
Q ss_pred ---ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHH
Q 000050 1783 ---GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2622)
Q Consensus 1783 ---~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~ 1859 (2622)
.-++-+-.+-.. ++.+++...+. +.+ .....++..+-+.+ -++...+...-+|....
T Consensus 547 LLsLSn~feiD~LS~---vMe~fVe~fse--------------ELs--pfa~eLa~~Lv~qF-lkiaq~l~ens~d~~s~ 606 (970)
T COG5656 547 LLSLSNTFEIDPLSM---VMESFVEYFSE--------------ELS--PFAPELAGSLVRQF-LKIAQSLLENSSDTSSV 606 (970)
T ss_pred HHHhcccccchHHHH---HHHHHHHHhHH--------------hhc--hhHHHHHHHHHHHH-HHHHHHHHcCCcccccc
Confidence 111111111111 11111111100 000 01111222211111 11222222222222222
Q ss_pred ---HHHHHHHHHHHHHh------hChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--ccchhhhHHHHH
Q 000050 1860 ---VRQAALHVWKTIVA------NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLPSIIPIL 1928 (2622)
Q Consensus 1860 ---VR~aA~~~l~~l~~------~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L 1928 (2622)
-.-+|..++.++.. +.|.-++.....+.|.+--.+.+.-.+.-..|+..+....-.. =.+++..+...+
T Consensus 607 vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell 686 (970)
T COG5656 607 VDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELL 686 (970)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Confidence 22344444444332 4555555555555555433343333333333444333222111 113455666667
Q ss_pred hhhcCCCCh-hhHHhHHHHHHHHHHhhChhhH--HHhHHhHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHhChhhhhh
Q 000050 1929 SRGLKDPSA-SRRQGVCIGLSEVMASAGKSQL--LSFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDE 2003 (2622)
Q Consensus 1929 ~~~L~d~~~-~vR~~a~~~L~~li~~~~~~~l--~~~l~~ll~~l~~~L~d~d~--~VR~~A~~al~~l~~~~g~~~~~~ 2003 (2622)
.+.+.++.. .--..+..++..++...+.+.. ..|..-+......+++..+. +-+..+++....+.-+.+....++
T Consensus 687 ~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~q 766 (970)
T COG5656 687 LNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQ 766 (970)
T ss_pred HhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHh
Confidence 777777664 3344566777777664433221 23445566666677776654 445567777777777777777788
Q ss_pred hHHHHHHhcc
Q 000050 2004 IVPTLLHALE 2013 (2622)
Q Consensus 2004 ilp~Ll~~L~ 2013 (2622)
++|.+.+...
T Consensus 767 y~plfi~vag 776 (970)
T COG5656 767 YLPLFISVAG 776 (970)
T ss_pred hhHHHHHHHh
Confidence 8886665543
No 250
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=75.67 E-value=18 Score=42.03 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHH
Q 000050 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2622)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~ 1660 (2622)
..-.....+++.+...++. ...|++..++..+-++-.+++...|..+-.++|+.++.+|++.+-.++|
T Consensus 15 ~aw~~vl~v~s~lf~~lg~--~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGE--RSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 3444555666666665554 2456777788888887778888999999999999999999875444444
No 251
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.82 E-value=2.1e+02 Score=34.97 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC-----CC-cccchHhhhHHHHHHHhcCCC-----HHHHHHHHH
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-----PK-DMIPYIGLLLPEVKKVLVDPI-----PEVRSVAAR 1641 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~-~l~~~l~~ll~~L~~~L~d~~-----~~vR~~a~~ 1641 (2622)
....+.+.+.+|+.+.+ .-..+.+.+..+.....+ .+ -+.-.+-..+|.+...+.++. +.++ .++.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 34457888889987653 344466667666654222 11 111123345666777676665 3333 4456
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHH-HHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHH
Q 000050 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG-AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2622)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~-a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l 1720 (2622)
.|+.+++..|...+..++..+.+ ... ..+.. ..+.+..+...+.+++.-+.+..++..+.++.+.+|...+.++
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~---~~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAK---GRF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHh---cCC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 67777655444434443332221 111 01111 1122233333343333334444555556666666677777666
Q ss_pred HHhhhhhCcchhhhHHhHHHHHHhhcCCC
Q 000050 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADE 1749 (2622)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~ii~~ll~~L~d~ 1749 (2622)
..+.....-. .|+..+++.++++.+..+
T Consensus 213 ~~ll~~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 213 KVLLPHVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred HHHhccccCC-CCcchHHHHHHHHHhCCc
Confidence 6666554322 345555666666666544
No 252
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.15 E-value=12 Score=39.11 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=37.6
Q ss_pred ChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000050 1936 SASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1936 ~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~ 1994 (2622)
++.+-.-||.-||+++..++.. .+.. --..-..++.++.++|++||..|..|+..+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~-~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIE-KLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHH-HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHH-hcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566666777777777655321 1111 12345667889999999999999999887753
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.94 E-value=46 Score=36.53 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=75.1
Q ss_pred HHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhcC-CChhHHH
Q 000050 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVA 2171 (2622)
Q Consensus 2095 ~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~d-~d~~V~~ 2171 (2622)
+..++.+-. +..+....+..|.+++.+.++.+...|+.++..+.+++|..+...+ .+++..|..++.+ .+..|+.
T Consensus 22 l~icD~I~~--~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ 99 (144)
T cd03568 22 LDVCDKVKS--DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKE 99 (144)
T ss_pred HHHHHHHhc--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence 344444432 2456788899999999999999999999999999999986654333 5677888888877 7889999
Q ss_pred HHHHHHHHHHhhcCccchhhHHHHHHHHH
Q 000050 2172 AAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2622)
Q Consensus 2172 ~a~~aL~~l~~~~~~~~l~~lv~~l~~~l 2200 (2622)
.+.+.+.......+.+.....+..+.+.+
T Consensus 100 kil~li~~W~~~f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 100 KLREVVKQWADEFKNDPSLSLMSDLYKKL 128 (144)
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 98888888876665433223344444444
No 254
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=72.18 E-value=2.7e+02 Score=35.08 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.2
Q ss_pred HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000050 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2622)
Q Consensus 1736 ~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~ 1767 (2622)
...+..-+....|++-.||..|++.+..+++.
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 34667777888899999999999888777653
No 255
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.82 E-value=45 Score=36.62 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhc
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQLS 1452 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~ 1452 (2622)
+.+..|.+-+.++ |+++..-|+..++.+.+.+|..|...+. .++..+...+.+ .++.|++.+...+..-...+.
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 6777888888876 8999999999999999999987776654 566667777776 678899888777766655544
No 256
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.60 E-value=2.5e+02 Score=34.40 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH--hhhchhhhhH
Q 000050 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSLPLLL 1777 (2622)
Q Consensus 1700 ~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~--~~~~~i~~ll 1777 (2622)
.+...+.+.+|.||..++..+..+...-+..|..|-...++.+.+.+.+..+ .+. |..++..+.+. .....+..++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~-a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEP-AATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566677889999999987777766664456777777788888888888766 232 33333333221 1122233355
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1778 PAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1778 p~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..+...+.|..|..-...+.++..+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHh
Confidence 5555566677676655555555554
No 257
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.57 E-value=85 Score=39.70 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchH----HHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHhhhCccc
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAP----TLVSRLLDQLMKSDK---YGERRGAAFGLAGVVKGFGISS 1373 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~----~~i~~Ll~~L~~~~~---~~~r~~Aa~~L~~l~~~lg~~~ 1373 (2622)
.+..++..+..++.-++..++..+..++...+.... +.++.+++.+.+.-. .+....+..+|..++..-.-..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 455666788888999999999999888866554332 567777777765332 2344788888888885432111
Q ss_pred h-hhhcHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHHcCC-CCHHHHHHHHH
Q 000050 1374 L-KKYGIAATLREGL------ADRNSAKRREGALLAFECLCE---KLGRLFEPYVIQMLPLLLVAFSD-QVVAVREAAEC 1442 (2622)
Q Consensus 1374 l-~~~~i~~~L~~~l------~~~~~~~~R~~al~al~~La~---~~~~~~~~~v~~ilp~ll~~l~D-~~~~VR~aa~~ 1442 (2622)
. -..+.++.+...+ .+..+......+++++-.++= ..+.....+ ++|.+...+++ ....|-+-+..
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHH
Confidence 1 1124555566666 223244555566666655541 111111122 66666666653 34445455566
Q ss_pred HHHHHHHhhc
Q 000050 1443 AARAMMSQLS 1452 (2622)
Q Consensus 1443 al~~i~~~l~ 1452 (2622)
+++.+++.-.
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 6666655443
No 258
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=70.49 E-value=3.4e+02 Score=35.55 Aligned_cols=253 Identities=19% Similarity=0.218 Sum_probs=125.9
Q ss_pred HHHHHHHHH---HhCCC-hhhhHhhhHHHHHHhc-CCCC-HHHHHHHHHHHHHhhhccC---------------hhcHHH
Q 000050 2054 AHALGALAE---VAGPG-LNFHLGTILPALLSAM-GDDD-MDVQSLAKEAAETVTLVID---------------EEGVES 2112 (2622)
Q Consensus 2054 ~~aL~sLa~---~~g~~-l~~~l~~il~~Ll~~l-~~~~-~~vr~~a~~al~~l~~~~~---------------~~~l~~ 2112 (2622)
+-|+|.+.. ++|+. -...-+.++|.-++.+ .... ...|-++...+-.++.+-+ ...+++
T Consensus 18 alalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lne 97 (589)
T PF11229_consen 18 ALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNE 97 (589)
T ss_pred HHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHH
Confidence 345555543 23432 2223345666666654 3333 3345555554444433211 013677
Q ss_pred HHHHHHhhcCC-CChhHHHHHHHHHHHHHhhc----------cccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2113 LVSELLKGVGD-NQASIRRSSAYLIGYFYKNS----------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2113 ll~~Ll~~l~d-~~~~vR~~A~~~L~~l~~~~----------~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
++..+.+.+.. +.-..+..++..+|.+.-.+ +.||+ |+ ++..+..++..-+-.-.
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~s-YL-------------pE~S~iRaai~f~i~~G 163 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFS-YL-------------PESSFIRAAIDFLIEAG 163 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccc-cC-------------cchhHHHHHHHHHHHcc
Confidence 77777777753 55678888999999884221 12222 22 22334444444444444
Q ss_pred hhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC
Q 000050 2182 ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2622)
Q Consensus 2182 ~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~ 2261 (2622)
++-+...-+.+++.+...+..++.. ..+|.. .-..++..+.. +.. .++++..+.+....=+...
T Consensus 164 kkGpe~vpp~lvkvvl~~ia~vgeS---------~qyPPV----NWaalLsPLMR-lnf-GeEvq~lCLeiAvtQaqSS- 227 (589)
T PF11229_consen 164 KKGPESVPPSLVKVVLKPIATVGES---------YQYPPV----NWAALLSPLMR-LNF-GEEVQQLCLEIAVTQAQSS- 227 (589)
T ss_pred ccCCccCCHHHHHHHHHHhhhcCCC---------CCCCCc----cHHHHhhHHHh-ccc-cHHHHHHHHHHHHHhcccc-
Confidence 4444445566666655555443211 123322 23334433332 122 3555554443222222222
Q ss_pred hhhhhhhhh-hhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCC-CccCchHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 000050 2262 EQSLKEFVI-PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQD-STRTVRSSAALALG 2338 (2622)
Q Consensus 2262 ~~~l~p~v~-~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~-~l~p~l~~L~~~llk~L~d-~~~~vR~~Aa~aLg 2338 (2622)
++...++. -+.+|++..+. ...|...+..+.......+. .++.|+..+.-..++..+. .++++...+...|.
T Consensus 228 -qsAa~fLg~WlsPpli~sLs----~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLs 302 (589)
T PF11229_consen 228 -QSAAMFLGSWLSPPLIHSLS----VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLS 302 (589)
T ss_pred -ccHHHHHHhhcCcchhhhhh----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Confidence 23334442 34567887764 45788888888888776653 3455665444444444333 36677776666666
Q ss_pred HHH
Q 000050 2339 KLS 2341 (2622)
Q Consensus 2339 ~L~ 2341 (2622)
.-+
T Consensus 303 qAM 305 (589)
T PF11229_consen 303 QAM 305 (589)
T ss_pred HHh
Confidence 543
No 259
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=69.21 E-value=53 Score=38.84 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcC-CCCchhhHhH-HHHHHHHHhhCCccccCC
Q 000050 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS-SPSWAARHGS-VLVFATFLRHNPSAISMS 2467 (2622)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~-~~~~~~r~~~-~~~L~~~l~~~~~~i~~~ 2467 (2622)
......+..+..+...+.|..+..+++........ . .++.+..++. -++|...-.. ...+...+...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-E---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-H---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-H---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 44556666777788778888877777665543332 1 2333334443 3455332211 12222222211
Q ss_pred hhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000050 2468 PLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2622)
Q Consensus 2468 ~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~ 2547 (2622)
+.+.+.+.+.+.++++..|..++.++-..... .....++..+...+.|++.-||.....+|+.++.++
T Consensus 119 ---~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ---GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 23566777888999999999998776544333 245667777777889999999999999999999999
Q ss_pred chhhhhhHhh
Q 000050 2548 PSAIMVHVAL 2557 (2622)
Q Consensus 2548 ~~~v~~~l~~ 2557 (2622)
|+.+.+++..
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 260
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.07 E-value=20 Score=40.54 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC--hhhHHHh
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG--KSQLLSF 1962 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~--~~~l~~~ 1962 (2622)
+.+...|.+.+...|..|...+.+++...|+. ++|+++..+..++...|.++...++..|..+....+ +.++.+|
T Consensus 117 p~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPf 196 (262)
T KOG3961|consen 117 PLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPF 196 (262)
T ss_pred HHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhH
Confidence 33444455666667888999999999988876 578999999999999999988888888877765443 5678899
Q ss_pred HHhHHHHHHH
Q 000050 1963 MDELIPTIRT 1972 (2622)
Q Consensus 1963 l~~ll~~l~~ 1972 (2622)
+.+++|.+..
T Consensus 197 YRQlLp~~n~ 206 (262)
T KOG3961|consen 197 YRQLLPVLNT 206 (262)
T ss_pred HHHhhhhhhh
Confidence 9999988764
No 261
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=68.74 E-value=81 Score=43.68 Aligned_cols=171 Identities=14% Similarity=0.141 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc--
Q 000050 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-- 1919 (2622)
Q Consensus 1842 ~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-- 1919 (2622)
..+++..+|....|....-|. +.-|...+...|..+..+-..|.....+-+.......-..|..++..++.++.+.
T Consensus 15 yKkLV~~iFPr~~e~gpn~s~--m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n 92 (819)
T KOG1877|consen 15 YKKLVDNIFPRSPEDGPNKSK--MEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQIN 92 (819)
T ss_pred HHHHHHHhCCCCCCCCccccc--HHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhH
Confidence 345555566543333222222 3334455555666665555555555555555444444567888999998888776
Q ss_pred -hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcC-Cc----HHHHHHHHHHHHHH
Q 000050 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCD-SI----LEVRESAGLAFSTL 1992 (2622)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d-~d----~~VR~~A~~al~~l 1992 (2622)
+...++..+...|.+..++.+..+|..+...+...... ...-.++.+++.+..+... .+ ..+|.+..+++..+
T Consensus 93 ~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~ 172 (819)
T KOG1877|consen 93 LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAV 172 (819)
T ss_pred HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHH
Confidence 45677788888888888999999999888876433221 2222235555555544332 22 23444444444444
Q ss_pred HH---------HhCh-hhhhhhHHHHHHhccc
Q 000050 1993 FK---------SAGM-QAIDEIVPTLLHALED 2014 (2622)
Q Consensus 1993 ~~---------~~g~-~~~~~ilp~Ll~~L~~ 2014 (2622)
.. ..+. ...+.++|.++..+..
T Consensus 173 v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 173 VWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred HHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 22 1222 2256667777766644
No 262
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=67.93 E-value=73 Score=37.10 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHh
Q 000050 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465 (2622)
Q Consensus 1396 R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~ 1465 (2622)
-...+..++.+.+.+|....|++..++..+-+.-.+++...|+.+..+++..+..++++.+-.++|.-++
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 3456677777888888777888888888888888888888999999999999999999988888885444
No 263
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.79 E-value=16 Score=38.58 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=58.5
Q ss_pred hhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhc-----------CCcchhhchhHHHH
Q 000050 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLK-----------DGSTPVRLAAERCA 2581 (2622)
Q Consensus 2513 ~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~-----------~~~~~vk~aae~a~ 2581 (2622)
...+++..+..-++++++.||.-++.+|..++++++..++..+..-...+..+.. +.+..||.+|..++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 4567888888899999999999999999999999988877666655555555432 23667899999998
Q ss_pred HHHhc
Q 000050 2582 VHAFQ 2586 (2622)
Q Consensus 2582 ~~~~~ 2586 (2622)
..+|.
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 88875
No 264
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=66.74 E-value=3.7e+02 Score=34.48 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhhcCCCCchhhH--hHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000050 2472 SILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVV--DILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2472 ~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~--~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~ 2545 (2622)
+++..|...+...+ |.+-.-|..=+|.++.+..+. ...+. ..=..++..+++++++||..|+.++..+--
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g----k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG----KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH----hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 46667777666554 666666777788887775321 11111 123578888999999999999999887654
No 265
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.35 E-value=61 Score=35.61 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh---------------hhHHHhHHhH
Q 000050 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------SQLLSFMDEL 1966 (2622)
Q Consensus 1902 R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~---------------~~l~~~l~~l 1966 (2622)
|...+.++..++....+..+|.+++-+.+.++. ++......+..|..+.+.... ..+....+.+
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i 83 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDI 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444555555555554443 233333333333333222210 1123344555
Q ss_pred HHHHHHHhcCCc----HHHHHHHHHHHHHHHHHhChhhh--hhhHHHHHHhcccCCchhHHHHH
Q 000050 1967 IPTIRTALCDSI----LEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTALDG 2024 (2622)
Q Consensus 1967 l~~l~~~L~d~d----~~VR~~A~~al~~l~~~~g~~~~--~~ilp~Ll~~L~~~~~~~~aL~~ 2024 (2622)
++.+...+.... .++...+.+++...........+ .++++.+++.|.++.....|.+.
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~c 147 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666554322 67777788888877664443322 34677777777666655555443
No 266
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.70 E-value=4.9e+02 Score=35.17 Aligned_cols=102 Identities=22% Similarity=0.333 Sum_probs=72.2
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC
Q 000050 2231 LPIFLQGLI-SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP 2309 (2622)
Q Consensus 2231 lp~ll~~L~-~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p 2309 (2622)
+|.++..+. .+.|..|.+|..++|++.-. +..+++..+..|.|-++|. +.+||..++.++.-+.-.....++.
T Consensus 935 lpllIt~mek~p~P~IR~NaVvglgD~~vc-----fN~~~de~t~yLyrrL~De-~~~V~rtclmti~fLilagq~KVKG 1008 (1128)
T COG5098 935 LPLLITSMEKHPIPRIRANAVVGLGDFLVC-----FNTTADEHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQLKVKG 1008 (1128)
T ss_pred HHHHHHHHhhCCCcceeccceeecccccee-----hhhhhHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccceeecc
Confidence 344444333 34566777777777777633 4456677788899999985 8889999999999887766556666
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2310 FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2310 ~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
+++ .+.++|.|++..+...|-.-+-.++.
T Consensus 1009 qlg----~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 1009 QLG----KMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred chh----hhHhhccCCcchHHHHHHHHHHHHHh
Confidence 655 45678999988888777766666543
No 267
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=64.35 E-value=2.7e+02 Score=35.33 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhcc-------chhhhHHHH
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGE-------RVLPSIIPI 1927 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s---~~~~~R~~A~~~L~~lv~~~~~-------~~l~~llp~ 1927 (2622)
++|-.....++..+-......+..++..++...+.++.+ ..++.|..-...|..+++.+.+ .....++..
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444555666666666666663 4689999988888888877533 334567777
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhCh---hh----HHHhHHhHHHHHHHHhcCCc
Q 000050 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGK---SQ----LLSFMDELIPTIRTALCDSI 1978 (2622)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~~L~~li~~~~~---~~----l~~~l~~ll~~l~~~L~d~d 1978 (2622)
+.-++++++.++...++..+.+++..... +. ...|+-.++..+...+.|++
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 88889999999999999999999887654 22 23444555555556666653
No 268
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.05 E-value=5.8e+02 Score=35.83 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=147.5
Q ss_pred CcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcC-CCCHhhHHHHHHHHHHHHHh
Q 000050 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2622)
Q Consensus 2224 ~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2622)
|-++++.+|.+++++.++ +.-.++...+..+++.+. ..+.||.+++....-.++.. ......|..++.++|-+...
T Consensus 544 P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 578889999999999754 344567777999998887 88999999887666665543 23556888899999988775
Q ss_pred cC-CCccCchHHHHHHHHH----HhCCC--CHHHHHHHHHHHHHHHhcc--------------cCh----------hhHH
Q 000050 2303 GG-IALKPFLPQLQTTFIK----CLQDS--TRTVRSSAALALGKLSALS--------------TRV----------DPLV 2351 (2622)
Q Consensus 2303 ~~-~~l~p~l~~L~~~llk----~L~d~--~~~vR~~Aa~aLg~L~~~~--------------~~~----------~~ll 2351 (2622)
.. ...-.|+-+|...++. ++... +.+-+.+.+.-++.+..+- |-. -.+.
T Consensus 621 ~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 53 2222344444444443 32222 4555555555555553320 101 1122
Q ss_pred HHHHHhhhc------CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhh--c
Q 000050 2352 GDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL-GIMSQC--M 2422 (2622)
Q Consensus 2352 ~~Ll~~l~~------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~L-g~L~~~--~ 2422 (2622)
.+++..++. .+.++-+..+.....-+...+..+..++.+.+...+........-.+-...+.|+ ...... .
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~ 780 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCK 780 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcccccc
Confidence 233332221 2344445544444444444555566788888888887743332211111111111 111110 0
Q ss_pred C--chHHHHHHHHHH---h-hcCCCCchhhHhHHHHHHHHHhhCCccccC-ChhHHH-HHHHHHhhhccCChhHHHhHHH
Q 000050 2423 E--DGQLADLLQELL---N-LASSPSWAARHGSVLVFATFLRHNPSAISM-SPLFLS-ILDRLKSSLKDEKFPLREASTK 2494 (2622)
Q Consensus 2423 ~--~~~~~~~l~~ll---~-~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~-~~~~~~-i~~~l~~~~~~~~~~ir~~a~~ 2494 (2622)
| ...+...++..+ + ..-.++..........+..+++..|.-... ..-+.. +.......+.+..+..-.++..
T Consensus 781 ~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 781 PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 0 011233333311 1 121334334444555777888888876532 223334 3335566677766665555555
Q ss_pred HHHHHHhhh
Q 000050 2495 ALGRLLLHQ 2503 (2622)
Q Consensus 2495 alg~ll~~~ 2503 (2622)
-+..+...+
T Consensus 861 F~t~~~~~~ 869 (982)
T KOG2022|consen 861 FLTALATYA 869 (982)
T ss_pred HHHHHHhhc
Confidence 555554443
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=63.87 E-value=43 Score=38.70 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCch
Q 000050 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549 (2622)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~ 2549 (2622)
....++.+.+.+.+.+..+|..|+..++.++..+. ..+...++.++....|++..+|..|...++.+..++|+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL-------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 34455566667888999999999999999887654 24578999999998999999999999999999999998
Q ss_pred hhhhhH
Q 000050 2550 AIMVHV 2555 (2622)
Q Consensus 2550 ~v~~~l 2555 (2622)
.+...+
T Consensus 79 ~v~~~~ 84 (187)
T PF12830_consen 79 LVESRY 84 (187)
T ss_pred HHHHHH
Confidence 875443
No 270
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.71 E-value=25 Score=36.81 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhhHHH------HHHHhhhcCCHhHHHHHHHHHHHHHhh
Q 000050 2313 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVG------DLLSSLQVSDAGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2313 ~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~ll~------~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2622)
++...+++.|..+ ++.+-..|+.=+|.++...|+-..++. .++..+..+|++||+.+|.|+..++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4666677777554 778888899999999998887666654 366777788999999999999887753
No 271
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.08 E-value=1.6e+02 Score=37.31 Aligned_cols=100 Identities=17% Similarity=0.072 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCc-ccchH----hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch---hhH
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKD-MIPYI----GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP---DLV 1659 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~-l~~~l----~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~---~ll 1659 (2622)
.+.++.+.....++.++..-....+ +..+. +.....+.+.+..+++.++..|+..++.++...+..... +.+
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 3457777777777777763211100 11111 013445556888889999999999999999876655444 677
Q ss_pred HHHHHHhhhcCCh---HHHHHHHHHHHHHHH
Q 000050 1660 SWLLDALKSDNSN---VERSGAAQGLSEVLA 1687 (2622)
Q Consensus 1660 ~~Ll~~L~~~~~~---~~r~~a~~~L~~i~~ 1687 (2622)
+.+++.+.+.... ..+..++++++.++.
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 8888777754322 123456677777764
No 272
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.85 E-value=88 Score=34.30 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc----------------chhH
Q 000050 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FEPY 1417 (2622)
Q Consensus 1354 ~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~----------------~~~~ 1417 (2622)
.|...+.+++.++...-+.... ++++.+.+.++. ++...+..+..+..+.+...+. +...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 4566677777777766555543 577777777765 3677777888888877765430 1112
Q ss_pred HHHHHHHHHHHcCC---CC-HHHHHHHHHHHHHHHHhhcHHhH--HhhHHHHHhhccCCChhhHHHHHHHH
Q 000050 1418 VIQMLPLLLVAFSD---QV-VAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQLL 1482 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D---~~-~~VR~aa~~al~~i~~~l~~~~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L 1482 (2622)
...++..+...+.. .. ..+...+..+++..+...+...+ ..+++.+++.+.+++- +..|+++|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 22344444444432 22 67778888888888776665544 3578888887765543 55555543
No 273
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.47 E-value=1e+02 Score=33.73 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2622)
..+..+.+-++++ |+++..-|+..++.+.+.||..|...+. ..+.-+++.+.+ .+..|++.....+..-..
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677777778877 7999999999999999999987766554 455556666642 467888877666655544
Q ss_pred hh
Q 000050 1450 QL 1451 (2622)
Q Consensus 1450 ~l 1451 (2622)
.+
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 33
No 274
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=62.45 E-value=4.2e+02 Score=33.61 Aligned_cols=166 Identities=11% Similarity=0.176 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhhccCh------hcHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHH-
Q 000050 2090 VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIVL- 2161 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~d~~~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~- 2161 (2622)
+|...+.-+...+...++ .-+++++..++.-.++..|..|. ..+.++..+++..+..+.++++.++..++..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344455555555554432 12455555555555555666665 4566777788777777778888777776653
Q ss_pred ---hcC---CChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHH
Q 000050 2162 ---LSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235 (2622)
Q Consensus 2162 ---l~d---~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll 2235 (2622)
+.+ .-++.|..-..-|..+...+.... -. +| |.....++..+.
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l------------~~---------------lp----~~~f~~~idsi~ 171 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPAL------------LQ---------------LP----PEQFKLVIDSIV 171 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHH------------HH---------------S-----HHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHH------------Hc---------------CC----HHHHHHHHHHHH
Confidence 332 236777777766666665443211 00 11 123445777788
Q ss_pred HHHccCCHHHHHHHHHHHHHHHhhcCh---hh----hhhhhhhhhHHHHHhhcCCCCH
Q 000050 2236 QGLISGSAELREQAALGLGELIEVTSE---QS----LKEFVIPITGPLIRIIGDRFPW 2286 (2622)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~l~~~~~~---~~----l~p~v~~i~~~Li~~l~~~~~~ 2286 (2622)
.|+.+...++-+.++.++..+...... +. ++.|.-.+..-++.++.|..+.
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 888888999999999999998876543 22 3344444455555666665433
No 275
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.41 E-value=1.1e+02 Score=33.67 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=55.3
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhc
Q 000050 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLS 1452 (2622)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~ 1452 (2622)
.+.+..|.+-+.++ |+++..-|+..++.+...+|..|...+. .++.-+...+. ..++.|++.+...+..-...+.
T Consensus 40 k~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 40 KYAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 36777888888876 8999999999999999999987766543 45555555554 5677888887777666655443
No 276
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=61.89 E-value=5.5e+02 Score=34.84 Aligned_cols=220 Identities=17% Similarity=0.171 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchH----HHHHHHHHHHh----cC--C----ChHHHHHHHHHHH
Q 000050 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAP----TLVSRLLDQLM----KS--D----KYGERRGAAFGLA 1363 (2622)
Q Consensus 1298 v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~----~~i~~Ll~~L~----~~--~----~~~~r~~Aa~~L~ 1363 (2622)
.+.+++.+...+++.+..+|..+++.+.......+.... ++++-+.+.|. +. + +.-.-.++..-++
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 456777777777888889999999988877766654332 22222222211 11 0 1123344444444
Q ss_pred HHHhhhCccchhhhcHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhcccchhHHHHH-HHHHHH-HcCCCCH
Q 000050 1364 GVVKGFGISSLKKYGIAATLREGLAD-------RNSAKRREGALLAFECLCEKLGRLFEPYVIQM-LPLLLV-AFSDQVV 1434 (2622)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~~-------~~~~~~R~~al~al~~La~~~~~~~~~~v~~i-lp~ll~-~l~D~~~ 1434 (2622)
++...+.+..+. -+.+.+.+.+.- -+....|+++++.+-.+.....+.+.+-+... ...++. .+-|++-
T Consensus 324 -la~~~~id~~d~-~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel 401 (993)
T COG5234 324 -LAGAGLIDYSDC-LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL 401 (993)
T ss_pred -Hhhccccchhhh-hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence 444444433321 134444433321 12346788888877777666444454444433 334444 6789999
Q ss_pred HHHHHHHHHHHHHHHh-hcHHhHHhhHHHHHhhccCCChhh--HHHHHH-HHHHHHhhCchhhhhhhhhhHHH-Hhhhhc
Q 000050 1435 AVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAWRT--KQSSVQ-LLGAMAYCAPQQLSQCLPKIVPK-LTEVLT 1509 (2622)
Q Consensus 1435 ~VR~aa~~al~~i~~~-l~~~~v~~ilp~Ll~~L~~~~w~~--r~~a~~-~L~~la~~~p~~l~~~L~~ivp~-L~~~L~ 1509 (2622)
.||.+|..++-..... .+.......+ .++ +|.. |...|. .+.......| .+..+- +++.. |++-|.
T Consensus 402 ~vRr~a~Aal~E~iGR~~s~a~g~~lI-slI------N~~sv~r~s~csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~ 472 (993)
T COG5234 402 NVRRAATAALFEVIGRHASIADGLSLI-SLI------NYVSVTRISNCSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQ 472 (993)
T ss_pred hhhhHHHHHHHHHhccCCCcccchhhh-hhc------cceecchhhhcchHHHHHhcCcc-ccchHH-HHHHHHHHhhhh
Confidence 9999998888776654 2211111111 122 3311 111111 1111111222 222222 22222 555566
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 000050 1510 DTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~ 1528 (2622)
+-+++|+-....+|.++.+
T Consensus 473 H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 473 HWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred ccchhhhhhccccHHHHhc
Confidence 7788899998999988865
No 277
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.74 E-value=72 Score=34.95 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCC--C
Q 000050 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQ--V 1433 (2622)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~--~ 1433 (2622)
....+...++.- ... ....+..|.+-+.+. ++++..-|+..+..+...+|..|...+. .++..+...+.++ .
T Consensus 25 ~~l~icD~i~~~-~~~--~kea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~ 100 (140)
T PF00790_consen 25 LILEICDLINSS-PDG--AKEAARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTD 100 (140)
T ss_dssp HHHHHHHHHHTS-TTH--HHHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHcC-Ccc--HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCC
Confidence 334455555433 112 236788888888886 8999999999999999999987766542 4555555544432 2
Q ss_pred HH--HHHHHHHHHHHHHHhh
Q 000050 1434 VA--VREAAECAARAMMSQL 1451 (2622)
Q Consensus 1434 ~~--VR~aa~~al~~i~~~l 1451 (2622)
+. ||+.+...+..-...+
T Consensus 101 ~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 101 PETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHSHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 22 8887776666655544
No 278
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=61.41 E-value=4.7e+02 Score=33.88 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=66.8
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHH-HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhc-c-chhhhHHH
Q 000050 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLA--SSSSERRQVAGRALGELVRKLG-E-RVLPSIIP 1926 (2622)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~-ll~~L~~~L~--s~~~~~R~~A~~~L~~lv~~~~-~-~~l~~llp 1926 (2622)
.++|. .+||.++..++..+.... ..+..+... +--.++..+. ..+...|..|.+.+..+++.-+ . .+-..++.
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 45665 999999999998887643 333333321 1122344444 3467899999999999988732 2 23456666
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
.+.....+++...|..+...+.+++-
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELAL 137 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHh
Confidence 67766677888888888888888754
No 279
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=61.00 E-value=67 Score=44.83 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHH
Q 000050 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPI 2233 (2622)
Q Consensus 2154 il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ 2233 (2622)
-+..|+..++.+|..+.+.+-..+...+...... -++..+.+..-..+.... ...+.++..| +-..++..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~y~~~t~s~~~------~~il~~~~~P-~~K~~~~~ 74 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---WLVNGLVDYYLSTNSQRA------LEILVGVQEP-HDKHLFDK 74 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---HHHHHHHHHHhhcCcHHH------HHHHHhcCCc-cHHHHHHH
Confidence 3556777888888888877777777766543222 223333222221111100 0122233333 11234444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh-hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchH
Q 000050 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2622)
Q Consensus 2234 ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~ 2312 (2622)
+-+.+. .+..|..++..|+.++..-+ ..+...+ ..++.-|++.|....+..+...|+.+|..|+-.++..+.+|+|
T Consensus 75 l~~~~~--~~~~Rl~~L~Ll~~~v~~qp-~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 75 LNDYFV--KPSYRLQALTLLGHFVRSQP-PWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred HHHHHc--CchhHHHHHHHHHHHHhcCC-chHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 444444 45788999999999997765 3333333 3556667777776567788899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000050 2313 QLQTTFIKCL 2322 (2622)
Q Consensus 2313 ~L~~~llk~L 2322 (2622)
.|..+|.+.+
T Consensus 152 ~Lf~If~Rl~ 161 (668)
T PF04388_consen 152 DLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 280
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=60.88 E-value=8.2e+02 Score=36.50 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=109.2
Q ss_pred HHHHHHHhccccccCChh---hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHh---hhHHHHHHHh
Q 000050 1555 YSLDILLQTTFVNTVDAP---SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG---LLLPEVKKVL 1628 (2622)
Q Consensus 1555 ~al~~L~~~~~~~~~~~~---~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~---~ll~~L~~~L 1628 (2622)
++..+|.+.+|....... .....|..+...+.+...++....+.+|.|+.-.... .+...+. .+.....-.+
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~--nmKkvLrE~GsVtaLa~~al 447 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS--NMKKVLRETGSVTALAACAL 447 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc--cHHHHHHhhhhHHHHHHHHH
Confidence 455555444443322111 1234566666666666656666666666666543211 1111111 1112222223
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHhhhcCChHHHHHHH-------HHHHHHHHHhchh--HH
Q 000050 1629 VDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAA-------QGLSEVLAALGTV--YF 1694 (2622)
Q Consensus 1629 ~d~~~~vR~~a~~aL~~L~~~~g~~-----~~~~ll~~Ll~~L~~~~~~~~r~~a~-------~~L~~i~~~~g~~--~l 1694 (2622)
.......-.....+|-.|...+-+. ..+..+.+|...|..+... .-...+ ..++..+.....- .+
T Consensus 448 ~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs-~tLaIIEsaGGILRNVSS~IAt~E~yRQIL 526 (2195)
T KOG2122|consen 448 RNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQS-NTLAIIESAGGILRNVSSLIATCEDYRQIL 526 (2195)
T ss_pred HhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCc-chhhhhhcCccHHHHHHhHhhccchHHHHH
Confidence 3444455566777777777766554 3566677777777654221 111111 2222222222211 11
Q ss_pred --HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHH--hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1695 --EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1695 --~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~--~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
..++..+++.+.+..-.+-..++-.|-.|....+.+ ..|+- ..++.+...+...+..+-..+..+++.++..-
T Consensus 527 R~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 527 RRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 456677777777665555555565666665554433 23332 26777888887777777788888888776543
No 281
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=60.05 E-value=6e+02 Score=34.66 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=55.8
Q ss_pred HHHHHHhccchhhhHHHHHhhhcC-CCChhhHHhHHHHHHHHHHhhChhhHH-HhHHhHHHHHHHHhcCCcHHHHHHHHH
Q 000050 1910 GELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALCDSILEVRESAGL 1987 (2622)
Q Consensus 1910 ~~lv~~~~~~~l~~llp~L~~~L~-d~~~~vR~~a~~~L~~li~~~~~~~l~-~~l~~ll~~l~~~L~d~d~~VR~~A~~ 1987 (2622)
+.++..+.+..+.+++-.+...+. .+...+|..++..++.+.....++... +..+.+...+...|.|.+.-+...|.+
T Consensus 466 ~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALe 545 (559)
T PF14868_consen 466 SFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALE 545 (559)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 334444444455566666666553 444558888888777765544333332 344555555666789999999999999
Q ss_pred HHHHHHHH
Q 000050 1988 AFSTLFKS 1995 (2622)
Q Consensus 1988 al~~l~~~ 1995 (2622)
+|+.+.+.
T Consensus 546 AF~~FAe~ 553 (559)
T PF14868_consen 546 AFGQFAER 553 (559)
T ss_pred HHHHHhcc
Confidence 99988654
No 282
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.94 E-value=1e+02 Score=33.35 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=55.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhc
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD---QVVAVREAAECAARAMMSQLS 1452 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D---~~~~VR~aa~~al~~i~~~l~ 1452 (2622)
..+..|.+-+.+. +++++.-|+..+..+...+|..|...+. ..+..+...+.. .++.||+.+...+..-...++
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6778888888887 8999999999999999999987765543 344445565554 467888887777766655444
No 283
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=59.73 E-value=12 Score=31.31 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=28.8
Q ss_pred HHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHH
Q 000050 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523 (2622)
Q Consensus 1482 L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL 1523 (2622)
|+.+....|..+.. +.+...+...+.|+++.||++|...+
T Consensus 3 l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45555555554432 47778888899999999999998753
No 284
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=59.35 E-value=2.4e+02 Score=33.29 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHh-HHHHHHHHHhhCCccccCChh
Q 000050 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHG-SVLVFATFLRHNPSAISMSPL 2469 (2622)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~-~~~~L~~~l~~~~~~i~~~~~ 2469 (2622)
....++..+.+++.-+.|-.+...+...-....++. .+.+..++.. -+.|...-. +...++..+...
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-~~~~~~~l~~--~~~Wd~vD~~~~~i~g~~~~~~--------- 113 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-LPLLEELITT--KSWWDTVDSLAKVVGGILLADY--------- 113 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHcC--CchHHHHHHHHHHHhHHHHhCC---------
Confidence 344445555555555567666666666554444433 2333333332 345543221 111222222221
Q ss_pred HHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCch
Q 000050 2470 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 2549 (2622)
Q Consensus 2470 ~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~ 2549 (2622)
+...+.+.+...+++...|..|+.+.-..... . ....+...+...++|+..=|+.+.-.+|+.+++.+|+
T Consensus 114 -~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 114 -PEFEPVMDEWSTDENFWLRRTAILHQLKYKEK---T------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred -hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---c------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 12345667778899999999998764332222 1 2233444455567788888999999999999999999
Q ss_pred hhhhhHhh
Q 000050 2550 AIMVHVAL 2557 (2622)
Q Consensus 2550 ~v~~~l~~ 2557 (2622)
.|.+|+..
T Consensus 184 ~V~~fl~~ 191 (208)
T cd07064 184 WVRDFVAA 191 (208)
T ss_pred HHHHHHHH
Confidence 99998854
No 285
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.35 E-value=71 Score=33.60 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHH--
Q 000050 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ-- 1420 (2622)
Q Consensus 1343 l~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~-- 1420 (2622)
++..+..+.+..-......+..++..- .... ..++..|.+-+.++ +|++..-|+..+..+...+|..|..++..
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~-~~~~--~~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~ 80 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINET-NVGP--KEAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASND 80 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCC-CccH--HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhH
Confidence 344444333333333444444444332 2222 26888898888887 89999999999999999999877776642
Q ss_pred HHHHHHH-----Hc-CCCCHHHHHHHHHHHH
Q 000050 1421 MLPLLLV-----AF-SDQVVAVREAAECAAR 1445 (2622)
Q Consensus 1421 ilp~ll~-----~l-~D~~~~VR~aa~~al~ 1445 (2622)
.+..++. .. .+.+..||+.+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 81 FAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 2222222 11 2456788887765554
No 286
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.01 E-value=27 Score=34.56 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=55.8
Q ss_pred hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000050 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg 2338 (2622)
..+..|+..++....+.++|..++.++..++...+..++..-+.+..++-....|.++.+-..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345566677766656889999999999999998888888888989998888888888877777776654
No 287
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=57.39 E-value=6.6e+02 Score=34.30 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=65.6
Q ss_pred ccccCChhhhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
+.+..+...+..++..+...+. +....+|-..++.++.+.+....+.+-.+..+.+...+..+|.|.+|-++..|.+++
T Consensus 468 ~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF 547 (559)
T PF14868_consen 468 FIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAF 547 (559)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4555666677777777777774 344568999999999998765433333456777777778888999999999999999
Q ss_pred HHHHhhhC
Q 000050 1644 GSLIRGMG 1651 (2622)
Q Consensus 1644 ~~L~~~~g 1651 (2622)
+.+++...
T Consensus 548 ~~FAe~T~ 555 (559)
T PF14868_consen 548 GQFAERTS 555 (559)
T ss_pred HHHhccCC
Confidence 99998643
No 288
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=56.85 E-value=2.9e+02 Score=37.15 Aligned_cols=323 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ 1420 (2622)
..++.-..+++....-+|..+++-.-.+...+.. +.+-.|..++++. +...|.++++.++....+..+ .+
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d---palALLsdyv~~~-~s~~ri~aIlGLglayaGsq~------e~ 487 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNECD---PALALLSDYLQSS-SSIHRIGAILGLGLAYAGSQR------EE 487 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccccC---HHHHHHHHhccCC-CceeehHHhhhhHHhhcCCch------HH
Q ss_pred HHHHHHHHcCCCCHH--HHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1421 MLPLLLVAFSDQVVA--VREAAECAARAMMSQLSAQGV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~--VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
++..+...+.|.+.. |.--|.-+++.++-..-...+ ..++..+++.-+ +..-.--+--...|+-+-.+.
T Consensus 488 V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgk------- 560 (878)
T KOG2005|consen 488 VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGK------- 560 (878)
T ss_pred HHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcc-------
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhh
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
.+-+......+..-....|+.+-..+..++-.-......---..+.....++...-. +.=-++.....+..-++-..+
T Consensus 561 -qe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e 639 (878)
T KOG2005|consen 561 -QESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE 639 (878)
T ss_pred -cchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 1655 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~ 1655 (2622)
..+..+...+.-.++.+|+..--+++-++- .+|+. .++..|-+...|.+.+|-..++-++|-+........+
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl 711 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL 711 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH
Q ss_pred hhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh
Q 000050 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2622)
Q Consensus 1656 ~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~ 1689 (2622)
..++..+...--.+...---...+|+|..+.++.
T Consensus 712 a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGt 745 (878)
T KOG2005|consen 712 AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGT 745 (878)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCc
No 289
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.60 E-value=1e+02 Score=33.41 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=53.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQV--VAVREAAECAARAMMSQL 1451 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~--~~VR~aa~~al~~i~~~l 1451 (2622)
..+..|.+-+.++ ++++..-|+..++.+...+|..|...+. .++..+...+.++. +.||+.+...+..-...+
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 6788888888876 7999999999999999999987766553 45666666665542 347877766665554444
No 290
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=56.49 E-value=38 Score=34.03 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=48.3
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L 2340 (2622)
.+|.+|..|...|+.++++.+......-|.+..++.+.+.|+ +...+--|..+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999988776667789999999999987 566777777777766
No 291
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=55.75 E-value=3.6e+02 Score=37.68 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHhhhhhCCCChhHHHHHHH----hhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCC
Q 000050 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLI----SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK 1266 (2622)
Q Consensus 1192 ~~R~~~~~al~~~~~~~~~~~~~~i~~~li----~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~ 1266 (2622)
.+|.-...+|..+......-..++|+.-++ .+.--|++..||..+..++..+..-+...+...++.++|.+.+..
T Consensus 445 ~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs 523 (1697)
T KOG3687|consen 445 AVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARS 523 (1697)
T ss_pred eEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcc
Confidence 456555556655544333222233443322 233457788999999999999998888888888888888888763
No 292
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=55.57 E-value=1.6e+02 Score=32.31 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=63.2
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
..+....+..|.+.+++.++.+...|+.++..+.++++..+...+ ..++..|..++. ..+..|++.+.+.+......
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999876554332 456777777765 56788999888888877766
Q ss_pred cCcc
Q 000050 2184 VPKE 2187 (2622)
Q Consensus 2184 ~~~~ 2187 (2622)
...+
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 5543
No 293
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.35 E-value=1.4e+02 Score=34.56 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh
Q 000050 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2622)
Q Consensus 1884 ~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~ 1956 (2622)
...++.+++..-+++..+|..|.+.+..+.+. |--.-.+.+|.+.....|+++.+|..|...+.++.+.++.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 34455555666788999999999999888764 3223346788888888899999999999988888766543
No 294
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.17 E-value=95 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=38.6
Q ss_pred hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHh
Q 000050 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2622)
Q Consensus 1692 ~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ 1737 (2622)
..+.+++..+.+.+++.+++||--++.++..++..-++.|...+..
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3467788888899999999999999999999998877778777654
No 295
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.12 E-value=5e+02 Score=32.19 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhHHH--HHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYVI--QMLPLLLVAFS--DQVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~~~v~--~ilp~ll~~l~--D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
++.+..++.+.++...|..+-.++..+....| +...+.+. +-++.+...+. ..+|.|-+.+..++..+.-.-+++
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 34566677776566778788888888877777 33444332 22333332221 233567777777777776665555
Q ss_pred hH----HhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1455 GV----KLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1455 ~v----~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.- ...-...++.+.. ....+++.+|+++.+|+....++-...+..-+..|+..-...|+.++.+|-.+|..++-
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 21 1122233444432 34578899999999999876665555566666777777777899999999999998875
Q ss_pred h
Q 000050 1529 V 1529 (2622)
Q Consensus 1529 ~ 1529 (2622)
.
T Consensus 445 ~ 445 (461)
T KOG4199|consen 445 D 445 (461)
T ss_pred c
Confidence 4
No 296
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=54.34 E-value=62 Score=35.35 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=53.7
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000050 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
.+...+..+|.+.+++||..|.+||-..- +|.+.++-+.|...+.|. ..|+.+..+....-.+.+.+..-+.++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 44555678899999999999999998864 466666666677766553 344444443322222235566667788
Q ss_pred HHHHhhh
Q 000050 1579 PIVHRGL 1585 (2622)
Q Consensus 1579 p~L~~~l 1585 (2622)
|.+.+.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 8888765
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=53.95 E-value=1.8e+02 Score=31.85 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=51.9
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHH-HHHHcCC---CCHHHHHHHHHHHHHHHHh
Q 000050 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFSD---QVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~-ll~~l~D---~~~~VR~aa~~al~~i~~~ 1450 (2622)
.+.+..|++-+...+|+++..-|+..++.+.+.+|..|...+. +.+.- +...+.+ ....|++.....+..-...
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 3677778877765447888888999999999999987776553 45554 5555542 3457887776666655544
Q ss_pred h
Q 000050 1451 L 1451 (2622)
Q Consensus 1451 l 1451 (2622)
+
T Consensus 117 f 117 (141)
T cd03565 117 F 117 (141)
T ss_pred h
Confidence 4
No 298
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=53.74 E-value=1.2e+02 Score=33.14 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH-HhHHHHHHHHhcCC--cHH-
Q 000050 1905 AGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDS--ILE- 1980 (2622)
Q Consensus 1905 A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L~d~--d~~- 1980 (2622)
..--+.++++.- +......+..|.+.+.++++.+...++..|..++.++|......+. ..++..+...+.+. .+.
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 333445555443 2334567777888888999999999999998888887654332211 33455555544322 333
Q ss_pred -HHHHHHHHHHHHHHHhCh
Q 000050 1981 -VRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1981 -VR~~A~~al~~l~~~~g~ 1998 (2622)
||+.+...+......++.
T Consensus 104 ~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 899988888777766643
No 299
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=53.71 E-value=5.8e+02 Score=32.52 Aligned_cols=190 Identities=12% Similarity=0.136 Sum_probs=111.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccc---hhHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEK-LGRLF---EPYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~-~~~~~---~~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~ 1449 (2622)
+++..|...+..- +...|..+...+..+... .+..+ ..|+ .+++..++.+.++++. --.+...++.|+.
T Consensus 76 dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIK 152 (335)
T ss_dssp THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHh
Confidence 5566666666555 688888888888888765 33322 2344 4677788888776642 2222333333322
Q ss_pred hhcHHhH------HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc----hhhhhhhhhhHHHHhhhhcCCCHHHHHHH
Q 000050 1450 QLSAQGV------KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519 (2622)
Q Consensus 1450 ~l~~~~v------~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p----~~l~~~L~~ivp~L~~~L~D~~~~VR~aA 1519 (2622)
.+.+ ...+-.+++..+.++..+-..|...+..+....+ +.+..++..++....+++..++--.|..+
T Consensus 153 ---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 153 ---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp ---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred ---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 1111 2233335667777888888888888887766443 34566677888888888988888889999
Q ss_pred HHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHH
Q 000050 1520 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQI 1599 (2622)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~ 1599 (2622)
.+-|+.+...-.|- ....+.+.+| .-+..+...++|++..++-.|..+
T Consensus 230 lkLL~ellldr~n~------~vm~~yi~~~--------------------------~nLkl~M~lL~d~sk~Iq~eAFhv 277 (335)
T PF08569_consen 230 LKLLGELLLDRSNF------NVMTRYISSP--------------------------ENLKLMMNLLRDKSKNIQFEAFHV 277 (335)
T ss_dssp HHHHHHHHHSGGGH------HHHHHHTT-H--------------------------HHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHchhHH------HHHHHHHCCH--------------------------HHHHHHHHHhcCcchhhhHHHHHH
Confidence 99998886432221 1111112111 123344556667777777777777
Q ss_pred HHHhhh
Q 000050 1600 VGNMCS 1605 (2622)
Q Consensus 1600 l~~l~~ 1605 (2622)
..-+..
T Consensus 278 FKvFVA 283 (335)
T PF08569_consen 278 FKVFVA 283 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 300
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.58 E-value=1.5e+03 Score=37.44 Aligned_cols=1054 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----------hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----------GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----------~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~ 1489 (2622)
.++.+..+++..+..++.+...+++.+......- -+..+++.+.....++.|+.|.|.+..++.+....
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Q ss_pred chh-hhhhhhhhHHHHhhhhcCCCHHHHH----HHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 000050 1490 PQQ-LSQCLPKIVPKLTEVLTDTHPKVQS----AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2622)
Q Consensus 1490 p~~-l~~~L~~ivp~L~~~L~D~~~~VR~----aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2622)
|.. +-...-+++..++..+.|...++.. .+-..+..+...+.+.+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~------------------------------ 1114 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDE------------------------------ 1114 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHh------------------------------
Q ss_pred ccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC--CcccchHhhh-HHHHHHHhcCCCHHHHHHHHH
Q 000050 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--KDMIPYIGLL-LPEVKKVLVDPIPEVRSVAAR 1641 (2622)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~l~~~l~~l-l~~L~~~L~d~~~~vR~~a~~ 1641 (2622)
............+...+...+.+.+..||..+...+.++....+.+ +-+.||.+-+ .|.+..-+......++..-..
T Consensus 1115 ~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd 1194 (3550)
T KOG0889|consen 1115 LAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLD 1194 (3550)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHH
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHH
Q 000050 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2622)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~ 1721 (2622)
++.-.+. .|++.++. .........-++.++.....+..- +.+..........-.+|..+..+++
T Consensus 1195 ~~~fC~~-l~p~~f~~--------------~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~ 1258 (3550)
T KOG0889|consen 1195 AITFCLS-LGPCLFDF--------------TEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLA 1258 (3550)
T ss_pred HHHHHHH-cCCcccCc--------------hHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHH
Q ss_pred HhhhhhC---cchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH---hhhchhhhhHHHHhhccCCCchHHHHHH
Q 000050 1722 YLPRSLG---VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNWRIRQSS 1795 (2622)
Q Consensus 1722 ~L~~~~g---~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~---~~~~~i~~llp~l~~~l~d~~~rvR~~a 1795 (2622)
....... ....+|.+.++.++++.+.....++-..+..+++.+... ++.+.+...+..+...+.|..- .-...
T Consensus 1259 ~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~ 1337 (3550)
T KOG0889|consen 1259 ACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPG 1337 (3550)
T ss_pred HHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHH
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC
Q 000050 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2622)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2622)
++.++.++.-+. .+-..+.++.+.+.+..-..++++......+..........++.-+-.+....
T Consensus 1338 l~~ls~l~~ll~---------------~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~~ 1402 (3550)
T KOG0889|consen 1338 LEGLSRLLRLLI---------------NYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPPA 1402 (3550)
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccHH
Q ss_pred hhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccch-----hhhHHHHHhhhcC-CCChhhHHhHHHHHH
Q 000050 1876 PKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERV-----LPSIIPILSRGLK-DPSASRRQGVCIGLS 1948 (2622)
Q Consensus 1876 p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~-----l~~llp~L~~~L~-d~~~~vR~~a~~~L~ 1948 (2622)
...+-..+-..+-.+-..+. +.+...|..-...+.......-..+ .+.....+...++ ++....|...+.-..
T Consensus 1403 ~~~~~~~Ll~~v~~~e~~L~~~~~sp~r~pl~kfl~r~~~~tv~~f~~~~~~~~~~~~f~~~~~~~~~~~l~e~~~~~~~ 1482 (3550)
T KOG0889|consen 1403 ADKFLDELLLCVVLLEEVLRKEENSPFREPLLKFLNRFANPTVDYFLAQLDEPDLYRMFVYALRIDDLLPLREVLAKEWL 1482 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHccCchHHHHHHHcchHHHHHHHHHHHcccchhHHHHHHhhhHH
Q ss_pred HHHHhhChhhHHHhHH--------hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC------------hhhhhhhHHHH
Q 000050 1949 EVMASAGKSQLLSFMD--------ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG------------MQAIDEIVPTL 2008 (2622)
Q Consensus 1949 ~li~~~~~~~l~~~l~--------~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g------------~~~~~~ilp~L 2008 (2622)
+...-..+..-....+ +.++.+.... ..+++.-.........+....+ .-....+.-.+
T Consensus 1483 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v-k~~~e~~~s~~~iv~~l~~v~~~~~~~~~~~~~~~l~~~~~~~~l 1561 (3550)
T KOG0889|consen 1483 EFYTLLDPEISSYTVPNMASDIQFQMVPLISTMV-KNDDEWLLSSQFIVLALRRIWKLESILERLFLEDRLCLNSIVKCL 1561 (3550)
T ss_pred HHHHhccCccCccccchhhcchhhhhhHHHHHHH-hccHHHhhccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCH
Q 000050 2009 LHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088 (2622)
Q Consensus 2009 l~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~ 2088 (2622)
++.++....+..-+-.+-..+......-++.+...+. .++...--.......+-..++...+.+.
T Consensus 1562 L~~~~~~~~~~~l~~~il~~~~~~~~~d~~~l~~~l~---------------~~vi~~~~~~~kr~~f~~~l~~f~~~~~ 1626 (3550)
T KOG0889|consen 1562 LEYLSLNKYDLELLLQILSFFEGNDNIDLTFLKEFLE---------------HEVIKSYSYNMKRNLFLVFLNLFGDKDL 1626 (3550)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCccHHHHHHHHH---------------HHHhhcCCHHHHHHHHHHHHhhcCCccc
Q ss_pred HHHHHHHHHHHHhhh--------------ccChhcHHHHHHHHHhhcCC----CChhHHHHHHHHHHHHHhhcccccccc
Q 000050 2089 DVQSLAKEAAETVTL--------------VIDEEGVESLVSELLKGVGD----NQASIRRSSAYLIGYFYKNSKLYLVDE 2150 (2622)
Q Consensus 2089 ~vr~~a~~al~~l~~--------------~~~~~~l~~ll~~Ll~~l~d----~~~~vR~~A~~~L~~l~~~~~~~l~~~ 2150 (2622)
.....+.. +..++. -.+++....+.+.+.....+ .+...|.........+++..+....++
T Consensus 1627 ~~~~~~~~-l~~li~p~l~~~~~kge~~~i~~~d~~~~~~~~~~~~~~~~~~~~dd~~~i~~lqL~t~~ik~ase~i~d~ 1705 (3550)
T KOG0889|consen 1627 GADHKAQV-LQGLINPCLNYSFEKGETNEILGPDIVKKIDEVFVNKPLDPSYAYDDGLRIELLQLATLLIKYASEHIHDQ 1705 (3550)
T ss_pred chhHHHHH-HHHhhhHHHhhcccccccccccCCccchhhhhhhccCCCchhhhccchHHHHHHHHHHHHHhccHHHHHHh
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhh
Q 000050 2151 APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPL 2230 (2622)
Q Consensus 2151 ~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~i 2230 (2622)
.+.++...-.++...|+.++.++.-.+..++.... -...-+
T Consensus 1706 ~~~li~f~w~cl~~eD~~~k~~~~~~i~~fI~~~~---------------------------------------~~~kiV 1746 (3550)
T KOG0889|consen 1706 RKSLIKFAWNCLKSEDPMIKQSAYLVIAHFIERFQ---------------------------------------IPPKIV 1746 (3550)
T ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhc---------------------------------------cChhHh
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC-
Q 000050 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP- 2309 (2622)
Q Consensus 2231 lp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p- 2309 (2622)
++.+...+.+...|.|..+..+|..+..... ....+-=..+.--.-+++.+ +...-...+....-+++..+..+..
T Consensus 1747 ~qvf~~LlkT~~~E~R~~vk~aLdil~p~l~-~rm~~g~~~~~~w~kkiive--e~~~i~~~~~i~qliv~h~~~~~~~r 1823 (3550)
T KOG0889|consen 1747 LQVFVALLKTYQPEARAIVKQALDILTPALP-ARMELGDSKIPIWVKKIIVE--EGHSISQLLHVYQLIVRHSDLFYSSR 1823 (3550)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhchhhh-hhccCcccchHHHHHHHHHH--hhhhhHHHHHHHHHHHHhhhhhhhHH
Q ss_pred --chHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCC
Q 000050 2310 --FLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS 2385 (2622)
Q Consensus 2310 --~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~ 2385 (2622)
|++.++..+-+...-+ +.+-|..|..-.|.++. =++...-.+ .++.......+.....+..+.
T Consensus 1824 ~~fv~~lv~~~~rl~~~pn~~~e~r~laiel~~~ii~---------We~~rl~~~----~~e~~~~~~~e~~~~~s~~~~ 1890 (3550)
T KOG0889|consen 1824 VRFVTPLVNSLPRLGSMPNSNSENRKLALELAGVIIK---------WELKRLKDT----DSETTLFSDSESLMSLSASIK 1890 (3550)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH---------HHHHHhhhh----hhhhhhcccchhhhhhhhcch
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH------HHHHHH-hhcCCCCchhhHhHHHHHHHHHh
Q 000050 2386 SAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD------LLQELL-NLASSPSWAARHGSVLVFATFLR 2458 (2622)
Q Consensus 2386 ~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~------~l~~ll-~~~~~~~~~~r~~~~~~L~~~l~ 2458 (2622)
. ..........++-+...+.|+..+......+.... ++..++ ....+........-.+-...++.
T Consensus 1891 r--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~kL~~~eK~lt~~d~~~~~~~~~~~~ld~l~~v~ 1962 (3550)
T KOG0889|consen 1891 R--------GFSAIPKRYTPGPTNHEGRCVNLDLVSLRPETWPSVNVKLNYFEKVLTDMDLPENNLGNYANGLDVLSVVL 1962 (3550)
T ss_pred h--------HHHhccCCCCCCcchhhhhHHhHHHHhccccchhhcchHHHHHHHHhcCCCCcccHHHHHHhhHHHHHHHH
Q ss_pred hCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcC------CCCHHH
Q 000050 2459 HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALH------DDSSEV 2532 (2622)
Q Consensus 2459 ~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~------d~s~dv 2532 (2622)
..-..-........+-..+-..+++++..+-+.--..+..++.......++........-..+...+. -.....
T Consensus 1963 ~~~~~~~i~~n~~~vq~~le~cl~~~~~~v~~~~~~~l~~~~~~~~~~~~e~e~~~~~v~~~i~~~l~s~~~~~~~~~~~ 2042 (3550)
T KOG0889|consen 1963 ENVPKEWIRENLNQIQALLEKCLKSGNLKVTEALNQLLSRLLSIFPNTHESLELLYQVVSKLIDELLTSVTTVPLQLASN 2042 (3550)
T ss_pred hcCCcHHHHHhHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhcCCCchhHHHHhhHHHHHHHhhhhheecccccchHH
Q ss_pred HHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcch-----------hhchhHHHHHHHhcccccchhHHHHHHHh
Q 000050 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTP-----------VRLAAERCAVHAFQLTRGSEYIQGAQKFI 2601 (2622)
Q Consensus 2533 r~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~-----------vk~aae~a~~~~~~~~~~~~~~~~~~~~l 2601 (2622)
-..++..++.++.++|+.+...+..+++.+-+..+|.-.+ +|..+|--+.++..++.....+..-..|+
T Consensus 2043 ~~~~~~~l~~~~~~~~~~~drLl~~~~r~~~k~a~dhl~~~~~~~~~~~~a~k~~~ell~~slel~~~ri~~l~~~~r~~ 2122 (3550)
T KOG0889|consen 2043 VFGTLTLLKTLCSNNPDYLDRLLPGFMRCFSKAAKDHLSCGAVLNSQLGDASKGRSELLIKSVELGRERIFYLGDSRRKS 2122 (3550)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcccchhhHHHHHHHHHHHhHHHHHHHHHHHhhh
Q ss_pred hc--hhhhhhccCCCcc
Q 000050 2602 TG--LDARRLSKFPEHR 2616 (2622)
Q Consensus 2602 ~~--~~~~~~~~~~~~~ 2616 (2622)
-. +-.--|.++++.+
T Consensus 2123 ~~~~~l~~lieks~d~~ 2139 (3550)
T KOG0889|consen 2123 LSQSVLVLLIEKSSDAS 2139 (3550)
T ss_pred hHHHHHHHHHhhcchHH
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.53 E-value=1.2e+03 Score=36.84 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhh-hhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000050 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~-i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~ll 2319 (2622)
..++.+..+..+...++..+......+..+. ++.++...+.+. ........++.+..--...-..+++..+
T Consensus 933 ~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~-~~~~v~~i~~~i~~~~~d~i~~~~~~~~------- 1004 (2382)
T KOG0890|consen 933 FKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLEHI-ELNLVSSILDFISLDNRDNIQILKSDIP------- 1004 (2382)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhccc-cHHHHHHHHHHHHHhhHHHHHhhhcccc-------
Confidence 4678888999999999988876666777666 577777776432 3444555555443211111001111111
Q ss_pred HHhCCCCHHHHHHHH-HHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhc--------CCCCC-hHHH
Q 000050 2320 KCLQDSTRTVRSSAA-LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA--------GKSVS-SAVK 2389 (2622)
Q Consensus 2320 k~L~d~~~~vR~~Aa-~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~--------g~~~~-~~~~ 2389 (2622)
.+.+..+--+..++ .-.-.+...+ .++..++.++..+......+|...+.-|...+.+. +..++ ++..
T Consensus 1005 -~l~~~p~~~~~~~~~~~~r~~~~~~-~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l 1082 (2382)
T KOG0890|consen 1005 -ILPSIPELGNLKAAIQEARGLLSED-DLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDL 1082 (2382)
T ss_pred -ccCCchHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhH
Confidence 11111111111111 1111111111 34556666777776666778877777777766521 11111 3556
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
.+++..|...+.+.+......+|+|||.++...|.
T Consensus 1083 ~ql~~~Ll~gc~k~~~~~~~~~akcLg~lgaidp~ 1117 (2382)
T KOG0890|consen 1083 SQLLTVLLDGCQKKTSQLEELCAKCLGELGAIDPS 1117 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence 77777777777766667889999999999988875
No 302
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=51.55 E-value=1.3e+02 Score=32.60 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=64.7
Q ss_pred CchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh--hhhhHHHHHhhcCCCCHh-hHHHHHHHHHHHHHh
Q 000050 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRK 2302 (2622)
Q Consensus 2226 ~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~-vk~~al~~L~~L~~~ 2302 (2622)
+....+..+.+.|.++++.+...|...+..+++.+| ..+...+ ..++..|.+.+....+.. |+..++..+......
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344567778888999999999999999999999998 4444333 345677888888766555 999999999888776
Q ss_pred cCCCccCchHHHHH
Q 000050 2303 GGIALKPFLPQLQT 2316 (2622)
Q Consensus 2303 ~~~~l~p~l~~L~~ 2316 (2622)
.+. .|-++.+..
T Consensus 113 f~~--~~~~~~i~~ 124 (133)
T smart00288 113 FKN--DPDLSQIVD 124 (133)
T ss_pred HcC--CCCchHHHH
Confidence 643 344444444
No 303
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=51.32 E-value=1.1e+03 Score=35.11 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHH
Q 000050 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2622)
Q Consensus 2430 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2622)
+++..+++....+.....+++.++..++...+...+ + ..+++....-.+.+++.+||..|+.-|..+-
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~--~-~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le 571 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPC--P-FWELLNLVLFKLGDESSEIRSKAMQLLRALE 571 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCC--C-HHHhHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 555555555455555556677788877754433221 2 3367777777789999999999999888764
No 304
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=49.80 E-value=1e+03 Score=34.18 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=59.2
Q ss_pred hhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhcc--Chhc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 000050 2069 NFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2622)
Q Consensus 2069 ~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~--~~~~----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~ 2142 (2622)
..+.+.+...+...+..++...-..++.++..+..-. .... ........-. .-..++......++.+...
T Consensus 436 ~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~----~~~~~~~~~~~il~rls~~ 511 (727)
T PF12726_consen 436 SRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNK----SLGQITDLISQILERLSDF 511 (727)
T ss_pred hhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence 3456666666666666666666666666666554311 1111 1111111100 0122333444555555443
Q ss_pred ccccccccH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000050 2143 SKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2622)
Q Consensus 2143 ~~~~l~~~~--~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~ 2184 (2622)
.+.++...+ ++....++.++=.++.+++++|.+.+.......
T Consensus 512 ~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 512 DPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred CHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 333322222 255566677777888899999999888887643
No 305
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.39 E-value=32 Score=28.46 Aligned_cols=29 Identities=38% Similarity=0.557 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1620 ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
.+|.|.+++.++++++|+.|+.+|+.++.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999998863
No 306
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.11 E-value=24 Score=28.86 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.5
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
..+|.+.+++++.+++++..|+++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888898889999999999999886
No 307
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.02 E-value=1.1e+03 Score=34.47 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=50.1
Q ss_pred HHhhHHHHHhhc-----cCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1456 VKLVLPSLLKGL-----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 v~~ilp~Ll~~L-----~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
+..++..++++. .+-....|..+++-||-|....|..+-. ...+..+.=.|.|.+..||..+.++|..+.+.
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 345555555542 4556788899999999999888876432 12223333367899999999999999888764
No 308
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=46.87 E-value=5.2e+02 Score=29.95 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=64.2
Q ss_pred HHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhh
Q 000050 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554 (2622)
Q Consensus 2475 ~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~ 2554 (2622)
+.+.....+++...|..|..++....... .+...++..+-..+.|++.-||.+...+|+.++...|+.+.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--------TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 56677788999999999988887765541 2456778888888888999999999999999999999999888
Q ss_pred HhhHHHH
Q 000050 2555 VALFGPA 2561 (2622)
Q Consensus 2555 l~~l~p~ 2561 (2622)
+......
T Consensus 180 l~~~~~~ 186 (197)
T cd06561 180 LEKNGLS 186 (197)
T ss_pred HHHHHHh
Confidence 8765443
No 309
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=46.69 E-value=48 Score=33.28 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCC--ChhhHHhHHHHHHHH
Q 000050 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRRQGVCIGLSEV 1950 (2622)
Q Consensus 1896 s~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~--~~~vR~~a~~~L~~l 1950 (2622)
+.++..|..|+..|+.++++.+.. ..+.+...+.+.+.|+ ...++.||..+|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998864 5688888888888865 456789999998876
No 310
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=46.64 E-value=1.2e+02 Score=31.22 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCC
Q 000050 282 LSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP---DALEAMFYAIKAVIGGS 339 (2622)
Q Consensus 282 ls~~~~~l~~~~~s~lkS~~~~~R~~a~~~~~~l~~~~~d~---~~~~~~~~~i~~~l~~~ 339 (2622)
+..++..++--+.+.+-+-.+.||..|+.++..|...|.+. ....+++++.++.++..
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 44456778889999999999999999999999999998776 34558999999998874
No 311
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.75 E-value=3.3e+02 Score=29.52 Aligned_cols=92 Identities=16% Similarity=0.052 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHH-hHHHHHHHHhcC---CcHHH
Q 000050 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALCD---SILEV 1981 (2622)
Q Consensus 1906 ~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~d---~d~~V 1981 (2622)
.--+.++++.- +..-...+..|.+.++++++.+...++..|..++.++|......+.. ..+..+.+.+.. .++.|
T Consensus 21 il~icd~I~~~-~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~V 99 (133)
T cd03561 21 NLELCDLINLK-PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKV 99 (133)
T ss_pred HHHHHHHHhCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHH
Confidence 33444444432 22334566677777888999999999999999999887643333322 444445555543 58899
Q ss_pred HHHHHHHHHHHHHHhCh
Q 000050 1982 RESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1982 R~~A~~al~~l~~~~g~ 1998 (2622)
+..+...+......++.
T Consensus 100 k~kil~ll~~W~~~f~~ 116 (133)
T cd03561 100 REKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99998888887766654
No 312
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=42.74 E-value=34 Score=34.10 Aligned_cols=58 Identities=16% Similarity=0.321 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
..|++++..|+++....|-.+...+|+++..|....+| ...|+..+-++|..|-+.-.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 46899999999999999988888999999888888887 66799999999999976544
No 313
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=42.37 E-value=44 Score=28.05 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000050 2296 LSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA 2336 (2622)
Q Consensus 2296 L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~a 2336 (2622)
|+.+...-+.-+. .+.++..+.+.+.|++..||.+|...
T Consensus 3 l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4455554443222 36788899999999999999998764
No 314
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.37 E-value=2e+02 Score=31.42 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=61.0
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~d------~d~~V~~~a~~aL~ 2178 (2622)
+.+....+..+.+++.+.++.+...|+.++..+.+++|..+-..+ .+.+..|..++.+ .+..|++.....+.
T Consensus 33 ~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 33 PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999887664433 4566677777742 56788888887777
Q ss_pred HHHhhcC
Q 000050 2179 RVVASVP 2185 (2622)
Q Consensus 2179 ~l~~~~~ 2185 (2622)
......+
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 7665544
No 315
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.09 E-value=2.1e+02 Score=33.83 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2622)
..+.+.....++++-+|.+++.++-..... .....++..+...+.+++..++.+...+|..++...|+.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 344444455555555555543332211111 222333333334444555555555555555555444443
No 316
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=41.15 E-value=1.1e+02 Score=34.15 Aligned_cols=115 Identities=15% Similarity=0.016 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhhc
Q 000050 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT 1509 (2622)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L~ 1509 (2622)
..+++|..+.-++..+++.......+.+-..+-..+.+........++.++..+.-..|+....-+ +++++.+...+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 456789888888888764444333344444444445544444666677777777666665543332 456777777777
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcC--ChhHHhHHHHHHhhc
Q 000050 1510 --DTHPKVQSAGQTALQQVGSVIK--NPEIASLVPTLLMGL 1546 (2622)
Q Consensus 1510 --D~~~~VR~aA~~aL~~l~~~~~--~~~i~~ilp~Ll~~l 1546 (2622)
..+..++.+++++|..-+..-. +--.+..++.|.+..
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888876653211 112245555555555
No 317
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.31 E-value=6.8e+02 Score=37.04 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhc-CCCCch-hhHhHHHHHHhhcCC---CCHHHH-------HHH
Q 000050 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTT-VVVDILASVVSALHD---DSSEVR-------RRA 2536 (2622)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~-~l~~~l~~l~~~l~d---~s~dvr-------~~a 2536 (2622)
+|--+...|.+.+.|+++++|..|++.+-.++..++.. ++..+. -.-+++-+++.+-.+ +.+..+ ...
T Consensus 994 lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 994 LWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred HHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence 34445567778889999999999999999998888765 332221 122333444431110 222222 235
Q ss_pred HHHHHHHHhhCchhhhh---------hHhhHHHHHHhhhcCCcchhhchhHHHHHHHh
Q 000050 2537 LSALKSVAKANPSAIMV---------HVALFGPALAECLKDGSTPVRLAAERCAVHAF 2585 (2622)
Q Consensus 2537 ~~~l~~~a~~~~~~v~~---------~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~ 2585 (2622)
..+++.+++-.++.... ....++.-+....-+.+..++.||-+|+-.++
T Consensus 1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 66677777654443322 22234444444455678888999988886654
No 318
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=39.47 E-value=3.3e+02 Score=38.14 Aligned_cols=81 Identities=6% Similarity=0.167 Sum_probs=59.9
Q ss_pred ccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-----hHHhHHHH
Q 000050 1467 LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPT 1541 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~ilp~ 1541 (2622)
+.......-.-+++++..+.-.|.+++...-..++..+.++|.+.+++++-.++.++-.|+..-.+. .++.+++.
T Consensus 65 l~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~k 144 (819)
T KOG1877|consen 65 LRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISK 144 (819)
T ss_pred HHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHH
Confidence 3344444455678888888888888876666778888888999999999999999999999655431 24667777
Q ss_pred HHhhcC
Q 000050 1542 LLMGLT 1547 (2622)
Q Consensus 1542 Ll~~l~ 1547 (2622)
+.+...
T Consensus 145 f~~l~h 150 (819)
T KOG1877|consen 145 FSSLCH 150 (819)
T ss_pred HHHHhh
Confidence 776653
No 319
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=39.31 E-value=1.1e+02 Score=34.15 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc---c--hhhhHHHHHhhh
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE---R--VLPSIIPILSRG 1931 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~---~--~l~~llp~L~~~ 1931 (2622)
..++|..+.-++..+....+..+.+.+...+... +.+.+.+....+..++..+....++ . ..+.+++.+...
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~---~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESL---LDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 4468888888888886655555555555544443 4443444566677777766543221 1 124555555555
Q ss_pred cC--CCChhhHHhHHHHHHHHHHhhChhhHH-HhHHhHHHHHHHHhc-CCcHH-HHHHHHHHHH
Q 000050 1932 LK--DPSASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALC-DSILE-VRESAGLAFS 1990 (2622)
Q Consensus 1932 L~--d~~~~vR~~a~~~L~~li~~~~~~~l~-~~l~~ll~~l~~~L~-d~d~~-VR~~A~~al~ 1990 (2622)
.. .++..+...++..+.. .+..+... ......++.+..... +++.. +|..|+-++.
T Consensus 95 ~~~~~~~~~~~~~~lell~a---Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSA---ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHH---HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 54 4566666666666553 23333332 234566777777774 44555 7777766554
No 320
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=39.01 E-value=1e+03 Score=33.75 Aligned_cols=136 Identities=16% Similarity=0.181 Sum_probs=89.7
Q ss_pred hCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhc--CCHhHHHHHHHHHHHHHhhc-----CCCCChHHHHHHHH
Q 000050 2322 LQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV--SDAGIREAILTALKGVLKHA-----GKSVSSAVKIRVYS 2394 (2622)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~--~d~~vr~~~l~AL~~vi~~~-----g~~~~~~~~~~i~~ 2394 (2622)
.++.++..+..|-..|-.+-+.++ +.-.|....-+ .+...|..++-=++.-|.+. |..+.+.....|-.
T Consensus 13 aqs~~p~s~k~AE~~Lrqwe~q~g----F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~ 88 (947)
T COG5657 13 AQSPDPPSVKCAEERLRQWEKQHG----FALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRD 88 (947)
T ss_pred hcCCCCchHhhHHHHHHhhhcccc----HHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHH
Confidence 455677888888888887755333 44444444422 35677888777777766543 33332222224444
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCC
Q 000050 2395 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNP 2461 (2622)
Q Consensus 2395 ~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~ 2461 (2622)
.+..++-..+.......|.|++.++...=+++...++++++..+.+.+..+-.++..+++.+++.-.
T Consensus 89 ~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 89 ELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 4555555566666678899999999987777888999999887777666556667778888877644
No 321
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=38.87 E-value=1.1e+03 Score=33.60 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccCchH-----HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcccChh-----hHHHHHHH
Q 000050 2288 VKSAILSTLSIIIRKGGIALKPFLP-----QLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVD-----PLVGDLLS 2356 (2622)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~l~-----~L~~~llk~L~d-~~~~vR~~Aa~aLg~L~~~~~~~~-----~ll~~Ll~ 2356 (2622)
....++.+|..++...|....-|-. .+.+.|...+.. .+..+...|...+..+...++-+. ..+..|++
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3456788888888776532111110 112222223322 355666667666665543332222 24455666
Q ss_pred hhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--cCch---HHHHH
Q 000050 2357 SLQVSDAGIREAILTALKGVLKHAGKSVSSAVK-IRVYSVLKDLVYHDDDHVRVSAASILGIMSQC--MEDG---QLADL 2430 (2622)
Q Consensus 2357 ~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~-~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~--~~~~---~~~~~ 2430 (2622)
.+.+ .+..|+.+++.|..+... +.-..+... ..+..++...+....+..|..+|+++|++... .++. .+..+
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 6654 467899999888876542 111111111 11233333345567788999999999998632 2322 25566
Q ss_pred HHHHH
Q 000050 2431 LQELL 2435 (2622)
Q Consensus 2431 l~~ll 2435 (2622)
+++.+
T Consensus 1899 LP~~f 1903 (2235)
T KOG1789|consen 1899 LPEIF 1903 (2235)
T ss_pred chHHH
Confidence 66644
No 322
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=38.86 E-value=3.3e+02 Score=38.31 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG 1455 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2622)
.++..|.+++.+ +..|..++..|+.+...-+..+...+. .+++.|++|+. |.+..+-..|..++-.+...++. .
T Consensus 70 ~~~~~l~~~~~~---~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~ 145 (668)
T PF04388_consen 70 HLFDKLNDYFVK---PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-S 145 (668)
T ss_pred HHHHHHHHHHcC---chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-h
Confidence 688888888875 468999999999988765543333222 57888999886 88888888888888888777653 3
Q ss_pred HHhhHHHHHh
Q 000050 1456 VKLVLPSLLK 1465 (2622)
Q Consensus 1456 v~~ilp~Ll~ 1465 (2622)
+...+|.|+.
T Consensus 146 l~~~L~~Lf~ 155 (668)
T PF04388_consen 146 LGPHLPDLFN 155 (668)
T ss_pred hhHHHHHHHH
Confidence 3555665554
No 323
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=36.40 E-value=2.7e+02 Score=35.00 Aligned_cols=105 Identities=11% Similarity=0.162 Sum_probs=70.6
Q ss_pred HHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhc-CCChhHH
Q 000050 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTV 2170 (2622)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~-d~d~~V~ 2170 (2622)
.+.+|+.+.. +.++-+..|..+++++.+.++.|...|+.+++.+..+++..+...+ .++...|..++. .....|+
T Consensus 29 IlDvCD~v~~--~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~ 106 (462)
T KOG2199|consen 29 ILDVCDKVGS--DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVC 106 (462)
T ss_pred HHHHHHhhcC--CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHH
Confidence 4555655543 2366788999999999999999999999999999988875543222 344455555555 5567777
Q ss_pred HHHHHHHHHHHhhcCccchhhHHHHHHHHH
Q 000050 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2622)
Q Consensus 2171 ~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l 2200 (2622)
......+........++---.++..+...+
T Consensus 107 ~k~~~lv~eWsee~K~Dp~lsLi~~l~~kl 136 (462)
T KOG2199|consen 107 EKMRDLVKEWSEEFKKDPSLSLISALYKKL 136 (462)
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 776666666666555554445555554444
No 324
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=36.34 E-value=1.1e+03 Score=30.61 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhhHHH------HHHHhhhcCCHhHHHHHHHHHHHHHhh
Q 000050 2313 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVG------DLLSSLQVSDAGIREAILTALKGVLKH 2379 (2622)
Q Consensus 2313 ~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~ll~------~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2622)
+|...+++.|+.+ ++.+=..|+.=+|.++.+.|+-..++. .++..+..+|++||..++.|+..++..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 5788888888887 588888999999999998887655554 366777788999999999999887753
No 325
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=35.84 E-value=1.1e+02 Score=31.49 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=48.1
Q ss_pred CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhc
Q 000050 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD 1669 (2622)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~ 1669 (2622)
+.+.||.+.++..+...+.+-.++||..+.+.|.-+.+.+++. +...+++.++..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4578899999999999999999999999999999999988865 3455666666655433
No 326
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.76 E-value=2.7e+03 Score=35.07 Aligned_cols=1109 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHH----hHHhhHHHHHhhc---------cCCChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000050 1431 DQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGL---------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2622)
Q Consensus 1431 D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L---------~~~~w~~r~~a~~~L~~la~~~p~~l~~~L 1497 (2622)
|.....|-....-+...++.+... .++.++|.+++.+ .++.-+.|...++++..+.. .+.+.++-
T Consensus 18 ~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~--~e~~~~~~ 95 (3550)
T KOG0889|consen 18 NLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPH--NEVFKPFS 95 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhccc--HHHHHHHH
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhH
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i 1577 (2622)
.+++..+..++...|.+.---|.+.+..+.+.++ +.++..+..++...-|-....+. ++...|......+.-..-
T Consensus 96 ~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~-~~~~~~v~~fl~~V~~ly~~~~~----~v~~~f~~p~~~~~~~~~ 170 (3550)
T KOG0889|consen 96 QELLKVLMRVLTNDNEENAILCLKIITDLFRQFK-SLVEQHVQPFLDIVIDLYKNMPN----LVNEGFIEPKSTEEEPLN 170 (3550)
T ss_pred HHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHhhhh----hcccccCCCCcCcCCCCC
Q ss_pred HHHHHhhhcCC----------------CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHH
Q 000050 1578 VPIVHRGLRER----------------SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2622)
Q Consensus 1578 ~p~L~~~l~d~----------------~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~ 1641 (2622)
.|.-....... +-++-...--++--+...... .+.+-++.++|...+.++=+.|
T Consensus 171 ~~~~~~~~~~~~~~~~~e~~~p~~~~~s~kvl~e~p~iv~~~~q~yk~--~i~~~i~~~~pL~~~~l~v~~~-------- 240 (3550)
T KOG0889|consen 171 HPESADSSLTEYHKIGVEQLLPSTYPQSFKVLAECPIIVVLLYQLYKQ--LIQTGIPELLPLILNFLSVRVP-------- 240 (3550)
T ss_pred chhhhhhhcCcccccCccccCcccccceeeeheeccHHHHHHHHHHHH--HhhhhhHHHHHHHHHHhCCCCC--------
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhhhcCCh--HHHHHHHHHHHHHHHHhchhHHHhHhHHHHH---hccCCChh---hH
Q 000050 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSN--VERSGAAQGLSEVLAALGTVYFEHILPDIIR---NCSHQRAS---VR 1713 (2622)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~--~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~---~l~~~~~~---vR 1713 (2622)
...+...+....++.+.+-.+. ..|.+...+.-.++..--...+=+.++.++. .++..-.. +|
T Consensus 241 ---------d~~~~~~~~~~~~~ll~~CP~el~~~RkElL~a~rhilst~~k~~f~P~id~L~de~iLiG~G~t~~e~lR 311 (3550)
T KOG0889|consen 241 ---------DSPYWMFLSDGTLQLLYDCPSELLSLRKELLVATRHILSTDLKRGFLPMIDKLLDERILIGTGFTAQESLR 311 (3550)
T ss_pred ---------CCccchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhHHHhccceeecCCcchhhhcc
Q ss_pred HHHHHHHHHhhhhhCcchhhh-HHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHH
Q 000050 1714 DGYLTLFKYLPRSLGVQFQNY-LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792 (2622)
Q Consensus 1714 ~~al~~l~~L~~~~g~~f~p~-l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR 1792 (2622)
.-+.+.+.++......++..- +..++....+.+-|+.-.+...++.| +.+-.+...+.+.-.++..+.|
T Consensus 312 plays~LAdllHhvR~~L~~~~i~~~i~l~s~~l~D~~l~~~iq~m~a----------kLllNlve~i~~~~~~s~~~~~ 381 (3550)
T KOG0889|consen 312 PLAYSMLADLLHHVRESLSLTQIIKVISLFSRNLHDSSLSSGIQTMSA----------KLLLNLVERIEELGCQSVDRAR 381 (3550)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCcchHHHHHHHHH----------HHHHHHHHHHHHhcCCchhHHH
Q ss_pred HHHHHHHHHHHHH------------------------hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHH
Q 000050 1793 QSSVELLGDLLFK------------------------VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2622)
Q Consensus 1793 ~~a~~ll~~ll~~------------------------~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~ 1848 (2622)
.--...+..+... ............+-+-.+....+....+-..++ ....++-+
T Consensus 382 ~lL~~il~~~v~kf~t~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~P~~~~~~~~kv~d~~~L~k~l~~--G~Kti~~~ 459 (3550)
T KOG0889|consen 382 DLLLRILESFVSKFKTFARYRDSAQFQKCKYEIKIGELKNSLPKIERPAEVPSFGSKVNDCRFLFKTLVS--GLKTIIWG 459 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhHhhhccccccCCCccccCcccccchhHHHHHHHHHh--hhHHhhHH
Q ss_pred HHHhcc------------------------------------------------C---CCHHHHHHHHHHHHHHHhhChh
Q 000050 1849 LYMVRS------------------------------------------------D---VSLSVRQAALHVWKTIVANTPK 1877 (2622)
Q Consensus 1849 L~~~~~------------------------------------------------D---~~~~VR~aA~~~l~~l~~~~p~ 1877 (2622)
+..+.. + ....-+++--..-.-+..-.|.
T Consensus 460 i~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~me~l~~~~~~~~~~~~~~~~~~s~r~keEke~lE~fa~vF~~i~~s 539 (3550)
T KOG0889|consen 460 IKVAKSPPPSGFVFNRLWKYVMHTCSYISLVRDAMEVLEIYPVNKEDNYDNPSNSSSPRTKEEKEALEEFATVFEMIDPS 539 (3550)
T ss_pred hhhccCCCccccccchhhhhhhHHHHHHHHHHHHHhHhhhhheeeccccccccccccccchhHHHHHHHHHHHHHHhCcH
Q ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------HHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHH
Q 000050 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGE------LVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2622)
Q Consensus 1878 ~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~------lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li 1951 (2622)
.+.+++..-+|.++.++.. +......+...+.. ++..+..-.++.+.......+.+...-+|.--+..-..
T Consensus 540 ~f~eIfe~~~p~iferi~~-n~~l~~i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~sv-- 616 (3550)
T KOG0889|consen 540 VFYEIFETNSPFIFERILK-NNALFHIANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFGSV-- 616 (3550)
T ss_pred hHHHHHHHhhHHHHHHHhc-cCcHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhhhh--
Q ss_pred HhhCh---hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHH
Q 000050 1952 ASAGK---SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2622)
Q Consensus 1952 ~~~~~---~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~i 2028 (2622)
...+. ..+.+|+..++..-.+...+.....-.. ..+-.+.+..|.-..+.....++..| ...++.+..+
T Consensus 617 ~~f~~~nervl~phv~~Ii~~smela~~a~eplnYf--~LLraLFRsigGg~~d~ly~e~lplL------~~lLe~ln~l 688 (3550)
T KOG0889|consen 617 SKFPSENERVLRPHVHDIISTSMELATTAPEPLNYF--QLLRALFRSIGGGAFDSLYREVLPLL------PNLLEILNHL 688 (3550)
T ss_pred hcccccchhhcccchhHHHHHHHHHHhcCCcchhHH--HHHHHHHHHhhccchHhHHHHHHHHH------HHHHHHHHHH
Q ss_pred H-hhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh
Q 000050 2029 L-SVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107 (2622)
Q Consensus 2029 l-~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~ 2107 (2622)
+ +.++...-...+....+.|++ =..+.||++-++.+++..++ ..+++......++...+.+..+
T Consensus 689 ~~~~~s~~mkdLfvELclTvPvR--------------LS~Llpylp~LM~PLv~aLk-gs~~lvsQgLRtlelcvDnltP 753 (3550)
T KOG0889|consen 689 LSSFHSQGMKDLFVELCLTLPVR--------------LSSLLPYLPLLMKPLVFALK-GSPELVSQGLRTLELCVDNLTP 753 (3550)
T ss_pred hhccCccchHHHHHHHHHhhhHH--------------HHHhhhhhhhhhhHHHHHhc-CCHHHHHHHHhHHHHHHhcCCh
Q ss_pred hc--------HHHHHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhcc-----------------------------ccccc
Q 000050 2108 EG--------VESLVSELLKGVGDN-QASIRRSSAYLIGYFYKNSK-----------------------------LYLVD 2149 (2622)
Q Consensus 2108 ~~--------l~~ll~~Ll~~l~d~-~~~vR~~A~~~L~~l~~~~~-----------------------------~~l~~ 2149 (2622)
++ ...+|..|...++.. +...-..|...+|.+..... ..+.-
T Consensus 754 efL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~l 833 (3550)
T KOG0889|consen 754 EFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLL 833 (3550)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCcchhhcccccccccccCccccceEEEeccccCccccC
Q ss_pred cHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCccc--hhhHHHHHHHHHh-----hchhhhhhhhcCCcccccc
Q 000050 2150 EAPNMISTLIVLLS--DSDSTTVAAAWEALSRVVASVPKEV--QPSYIKVIRDAIS-----TSRDKERRKKKGGPILIPG 2220 (2622)
Q Consensus 2150 ~~~~il~~L~~~l~--d~d~~V~~~a~~aL~~l~~~~~~~~--l~~lv~~l~~~l~-----~~~~~~~~~~~~~~~~l~g 2220 (2622)
.+.+.++.-+..+. ..|...+..++.-+.......-... ...-...+..... .........+.......+.
T Consensus 834 p~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~ 913 (3550)
T KOG0889|consen 834 PLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQD 913 (3550)
T ss_pred chHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcchHHHhhHhhhccccccccccccc
Q ss_pred CCCCcCchhhHHHHHHHHccC-------CHHHHHHHHHHHHHHHhhcChhhhhhhhh-------------hhhHHHHHhh
Q 000050 2221 FCLPKALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVI-------------PITGPLIRII 2280 (2622)
Q Consensus 2221 ~~~~~~l~~ilp~ll~~L~~~-------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-------------~i~~~Li~~l 2280 (2622)
..........+-..+.+.... ....+...-.++..+...++....+.|-. .++..|+..+
T Consensus 914 ~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l 993 (3550)
T KOG0889|consen 914 YSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESL 993 (3550)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHH
Q ss_pred cCCCCHhhHHHHHHHHHHHHHhc--------CCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc------C
Q 000050 2281 GDRFPWQVKSAILSTLSIIIRKG--------GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALST------R 2346 (2622)
Q Consensus 2281 ~~~~~~~vk~~al~~L~~L~~~~--------~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~------~ 2346 (2622)
... +.+++.+...++..+.... .....|..+.|.+-+.++..++..--|.....+++.++..-+ +
T Consensus 994 ~~~-~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~ 1072 (3550)
T KOG0889|consen 994 SHE-NSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDF 1072 (3550)
T ss_pred hcc-chhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHH
Q ss_pred hhhHHHHHHHhhhcCCHhHHH----HHHHHHHHHHhhcCCCCCh-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000050 2347 VDPLVGDLLSSLQVSDAGIRE----AILTALKGVLKHAGKSVSS-----AVKIRVYSVLKDLVYHDDDHVRVSAASILGI 2417 (2622)
Q Consensus 2347 ~~~ll~~Ll~~l~~~d~~vr~----~~l~AL~~vi~~~g~~~~~-----~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~ 2417 (2622)
...++..++..+++...++.. .+-..+..+...+-..... .....++..+...+.+++..||+.+.++|..
T Consensus 1073 ~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~ 1152 (3550)
T KOG0889|consen 1073 QVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRL 1152 (3550)
T ss_pred HHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q ss_pred HHhhcCchHHHHHHHHHHhhc---------CCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCCh--
Q 000050 2418 MSQCMEDGQLADLLQELLNLA---------SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF-- 2486 (2622)
Q Consensus 2418 L~~~~~~~~~~~~l~~ll~~~---------~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~-- 2486 (2622)
++...+. .+.+++..+-+.+ .........+.+.++...+...|..+.-..-...+...+......+..
T Consensus 1153 i~~~s~~-~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~ 1231 (3550)
T KOG0889|consen 1153 ISELSGK-SVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDEL 1231 (3550)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhh
Q ss_pred ----------------hHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchh
Q 000050 2487 ----------------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA 2550 (2622)
Q Consensus 2487 ----------------~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~ 2550 (2622)
+.|.+++..++..+....-..|....+....+..+...+..++++.-..+...++.+-...+..
T Consensus 1232 ~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~ 1311 (3550)
T KOG0889|consen 1232 ATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKL 1311 (3550)
T ss_pred hhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccc
Q ss_pred hhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhcccccchhHHHHHHHhhchhh
Q 000050 2551 IMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDA 2606 (2622)
Q Consensus 2551 v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 2606 (2622)
-.+++...+-+++..+-|.+. .=.+....+..++++...--+.....+.++.+..
T Consensus 1312 ~ke~lq~~lrplL~~l~d~~~-lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~ 1366 (3550)
T KOG0889|consen 1312 PKELLQSHLRPLLMNLSDHNN-LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKK 1366 (3550)
T ss_pred cHHHHHhhHHHHHHhhhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
No 327
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=34.66 E-value=3.5e+02 Score=31.46 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhhHHHHHhhccC-----CChhhHHHHHHHHHHHHhh
Q 000050 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYC 1488 (2622)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~la~~ 1488 (2622)
+++.+++..+++...+.-+.||..|+.++..+.....+. .+. -.+.+.+.+.. -+|..-..+...+..+...
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 456677888888888888899999999999887433221 111 12333333321 2376665555554444321
Q ss_pred CchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc--CChhHHhHHHHHHhhcCC
Q 000050 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLTD 1548 (2622)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~--~~~~i~~ilp~Ll~~l~d 1548 (2622)
| .+...++..++--...-...+...+..+|-.+.... .......++..++..+.+
T Consensus 82 -~----~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 82 -P----EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred -H----HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 1 222334444444445556677777778887777532 223456666666666543
No 328
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.16 E-value=1.8e+03 Score=32.36 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=76.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhc-CCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHH
Q 000050 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK 2478 (2622)
Q Consensus 2400 l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~ 2478 (2622)
.+|-++.+|..+.+-||......|+--+..-.-.++.|. .+.+..+|..++.+|..+.........-..+...+-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 345688999999999999999998733322222345675 4556677888888888776542111111123344444555
Q ss_pred hhh-ccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000050 2479 SSL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK 2541 (2622)
Q Consensus 2479 ~~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~ 2541 (2622)
+.+ ++.++.+|..++.-+-.....+. .-..-+.++...+-|.+..++++|..-+.
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g~--------L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSGL--------LSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcccc--------cChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 544 55566666665443322211110 11234445555555778888888776655
No 329
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=32.56 E-value=2.2e+02 Score=31.24 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHh-hcCCCCChHHHH
Q 000050 2312 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK-HAGKSVSSAVKI 2390 (2622)
Q Consensus 2312 ~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~-~~g~~~~~~~~~ 2390 (2622)
+++...+...|.+++.+|+..|..|+...-. |.+.||-..|-..+.+ ...|+.+. .... ..+..+.+++++
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l~pY~d~L~~Lldd--~~frdeL~----~f~~~~~~~~I~~ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYLTPYKDNLENLLDD--KTFRDELT----TFNLSDESSVIEEEHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHcCc--chHHHHHH----hhcccCCcCCCCHHHHh
Confidence 6788888999999999999999999997633 5566676666666653 34454432 2222 222235567777
Q ss_pred HHHHHHHHhh
Q 000050 2391 RVYSVLKDLV 2400 (2622)
Q Consensus 2391 ~i~~~L~~~l 2400 (2622)
.+++++...+
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 330
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=32.41 E-value=5.6e+02 Score=28.11 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=62.5
Q ss_pred HHHHHHHhhhccChhcHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHhhccccccccH--HHHHHH-HHHHhcC---CC
Q 000050 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLSD---SD 2166 (2622)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d-~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~-L~~~l~d---~d 2166 (2622)
.++.++.+- + +..+....+..|.+++.+ .++.+...|+.++..+.+++|..+-..+ .+.+.. |..++.+ .+
T Consensus 22 ileicD~In-~-~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~ 99 (141)
T cd03565 22 NMEICDIIN-E-TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPP 99 (141)
T ss_pred HHHHHHHHh-C-CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCc
Confidence 344444442 2 345677888888888874 6899999999999999999886654332 355665 6666652 34
Q ss_pred hhHHHHHHHHHHHHHhhcCc
Q 000050 2167 STTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2167 ~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
..|+....+.+.......+.
T Consensus 100 ~~Vk~kil~li~~W~~~f~~ 119 (141)
T cd03565 100 TIVQEKVLALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 57888888777777665543
No 331
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=32.16 E-value=1.7e+03 Score=31.81 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000050 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2622)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~ 2548 (2622)
....+.+.+..+...+++......+.++..+.....-. |. + ..+-+.+-....|..=..++.....++..++...|
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP 513 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34556667777777888888888888888764443211 10 1 11122222222233333667778888999999988
Q ss_pred hhhhhhHh--hHHHHHHhhhcCCcchhhchhHHHHHHHhc
Q 000050 2549 SAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2622)
Q Consensus 2549 ~~v~~~l~--~l~p~l~~~~~~~~~~vk~aae~a~~~~~~ 2586 (2622)
+.+...+. ...-++..++=.++..+..||..=+-.++.
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 88877775 677888888888999999998877777776
No 332
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.46 E-value=2.8e+02 Score=34.86 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=64.0
Q ss_pred hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh--hhhhHHHHhhhhc-CCCHHHHHHHHHHHHHHhhhcC
Q 000050 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK 1531 (2622)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~--L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~ 1531 (2622)
+-+..+..+...|+..+..+..-|+.+++++...|.+.+... -..+...+..++. ..|+.|++.....+...++.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 446666777778888888888899999999998887765332 3456666677777 5789999988888888887766
Q ss_pred ChhHHhHHHHHHhh
Q 000050 1532 NPEIASLVPTLLMG 1545 (2622)
Q Consensus 1532 ~~~i~~ilp~Ll~~ 1545 (2622)
+.---.+++.+.+.
T Consensus 122 ~Dp~lsLi~~l~~k 135 (462)
T KOG2199|consen 122 KDPSLSLISALYKK 135 (462)
T ss_pred cCcchhHHHHHHHH
Confidence 43222344444443
No 333
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.34 E-value=11 Score=46.46 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000050 842 RELLLNEEASIREKVQGV 859 (2622)
Q Consensus 842 ~~~qL~kE~~IR~~v~~~ 859 (2622)
++++++||.++|.+.|+.
T Consensus 561 ~qkr~kkEkk~k~k~qe~ 578 (641)
T KOG3915|consen 561 VQKRLKKEKKAKRKLQEA 578 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466788888888887754
No 334
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=30.75 E-value=3.4e+02 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCC-------CChhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHH
Q 000050 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-------NQASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIVL 2161 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d-------~~~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~ 2161 (2622)
+-..+..++-.++....+...+++.-.+.++... ....-|. .-...+..+++..+.-+.+|...++......
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777777888899999999999843 2233444 4445566777777778889988888888777
Q ss_pred hc
Q 000050 2162 LS 2163 (2622)
Q Consensus 2162 l~ 2163 (2622)
|+
T Consensus 117 L~ 118 (153)
T PF08146_consen 117 LK 118 (153)
T ss_pred HH
Confidence 75
No 335
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.58 E-value=2.5e+02 Score=27.88 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000050 1843 NEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2622)
Q Consensus 1843 ~~il~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~ 1910 (2622)
.+++.++... .+..+..||+..++++..++.+.+..++.-++.++..+-....+.++..-..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3455544333 4556889999999999999998888888878888888777777666666666666553
No 336
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.52 E-value=2.7e+02 Score=29.53 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=55.3
Q ss_pred hhHhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcCCcchhhchhHHHHHHHhcccc
Q 000050 2513 VVVDILASVVSALH-DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTR 2589 (2622)
Q Consensus 2513 ~l~~~l~~l~~~l~-d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~~~~~~~ 2589 (2622)
.+..+++.+..+++ ....|.|-.++..+..++.+.|= -.+.+..++..+.+.....+. ...+.-|+..+++-.+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~ 77 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQE 77 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccc
Confidence 45678888888888 88899999999999999997642 244667777777776665554 4556777777776663
No 337
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=27.18 E-value=1.7e+03 Score=30.15 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=50.3
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000050 1852 VRSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2622)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~p--~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~ 1915 (2622)
.++|.+..||.....++..+..+.| ..++.++..+...+++.+.-...-+|..+.+.+..+-..
T Consensus 322 ~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRIL 387 (740)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh
Confidence 3689999999999999999998766 456778888888888877643334999999988877543
No 338
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=26.92 E-value=1.8e+03 Score=30.35 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhhcCCC-CChHHHHHHHHHHHHhhcCCCH------------HHHHHHHHHHHHHHhhcCchHHHHHHH
Q 000050 2366 REAILTALKGVLKHAGKS-VSSAVKIRVYSVLKDLVYHDDD------------HVRVSAASILGIMSQCMEDGQLADLLQ 2432 (2622)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~-~~~~~~~~i~~~L~~~l~~~~~------------~vr~~aa~~Lg~L~~~~~~~~~~~~l~ 2432 (2622)
-+-.+.+|-+++...+.+ +.++....+.+.....+...+. .+-+..|++||.++..-=...-..++.
T Consensus 9 ~yI~CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~ 88 (552)
T PF14222_consen 9 IYILCRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIA 88 (552)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 345678888888877643 5667777777777776654433 345778999999987633333445555
Q ss_pred HHHhhcCCCCchhhHhHHHHHHHH----HhhCCccccCChhHHHHHHHHHhh---h-cc-CChhHHHhHHHHHHHHHhhh
Q 000050 2433 ELLNLASSPSWAARHGSVLVFATF----LRHNPSAISMSPLFLSILDRLKSS---L-KD-EKFPLREASTKALGRLLLHQ 2503 (2622)
Q Consensus 2433 ~ll~~~~~~~~~~r~~~~~~L~~~----l~~~~~~i~~~~~~~~i~~~l~~~---~-~~-~~~~ir~~a~~alg~ll~~~ 2503 (2622)
++-....... .........+..+ ++..|.. -+++-.+++.+. . .. .+..++.+-...+..+|.--
T Consensus 89 eL~~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e-----~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPv 162 (552)
T PF14222_consen 89 ELEKLRKDSN-DAESKIELLIMGMRYLRLKMYPEE-----AFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPV 162 (552)
T ss_pred HHHHhcccCC-chHHHHHHHHhhcceeeecCCCHH-----HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 5543322111 1222122222111 2233322 233333333322 1 22 45567777777777766543
Q ss_pred hhc--CCCCchhhHhHHH----HHHhhcCCCCHHHHHHHHHHHH-HHHhhCchhhhhhHh-hHHHHHHhhhcCCcchhhc
Q 000050 2504 IQS--GPANTTVVVDILA----SVVSALHDDSSEVRRRALSALK-SVAKANPSAIMVHVA-LFGPALAECLKDGSTPVRL 2575 (2622)
Q Consensus 2504 ~~~--~~~~~~~l~~~l~----~l~~~l~d~s~dvr~~a~~~l~-~~a~~~~~~v~~~l~-~l~p~l~~~~~~~~~~vk~ 2575 (2622)
... ..-+.+...+++. ....... ++...- .+.-.+- .++--.++.+..+-. .++..+...+||+ +.|.
T Consensus 163 A~~~~~evn~P~W~~~v~~i~~~~~~~~~-K~khw~-~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~ 238 (552)
T PF14222_consen 163 AATATAEVNHPKWKEAVETIYPRAAKMMS-KPKHWN-VAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRP 238 (552)
T ss_pred hhcccccccccHHHHHHHHHHHHHHHHHh-Ccchhh-hHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhH
Confidence 221 1111222333332 2223222 222221 2333333 333334455677777 6888888889998 7788
Q ss_pred hhHHHHHHHh
Q 000050 2576 AAERCAVHAF 2585 (2622)
Q Consensus 2576 aae~a~~~~~ 2585 (2622)
.+..|+.+++
T Consensus 239 ~~l~~l~RLl 248 (552)
T PF14222_consen 239 VALECLSRLL 248 (552)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 339
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=26.42 E-value=2.5e+03 Score=31.88 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000050 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2622)
Q Consensus 1882 ~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2622)
.++.++--++..+.+...+.|..+-.+++.++..+|+.+...+++.+...+
T Consensus 561 ~L~~illkic~~l~~~s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl 611 (1364)
T KOG1823|consen 561 NLPSILLDICYLLRSRSAELRDASRKTLAKIIKILGPKYLYFVIKELQTTL 611 (1364)
T ss_pred cCcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 577777778888889999999999999999999999998777777766544
No 340
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=26.11 E-value=38 Score=25.28 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhcCChhHHhHHHHHHhhc
Q 000050 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546 (2622)
Q Consensus 1515 VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l 1546 (2622)
||.+|.++|+.++. ...+|.|++.+
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHh
Confidence 78999999999985 34455555544
No 341
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.00 E-value=1.1e+03 Score=27.31 Aligned_cols=65 Identities=23% Similarity=0.163 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2622)
+.+...+.+++.|..| .|..++...... ..+...++..+-....|++..||.+..-+++.+....
T Consensus 108 ~~~~~w~~s~~~~~rR-~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 108 DLLEEWAKSENEWVRR-AAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HHHHHHHhCCcHHHHH-HHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6777888887555555 444433332222 3456778888888888899999999999988887663
No 342
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.83 E-value=1.1e+03 Score=27.88 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1380 AATLREGLADRNSAKRREGALL-AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~-al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
++.+...+.+..+|..-..... .++.+.. .-....+.+.....+++.-+|.+|..+.-...... ....
T Consensus 82 ~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~--------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~---~~~~ 150 (208)
T cd07064 82 LPLLEELITTKSWWDTVDSLAKVVGGILLA--------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT---DTDL 150 (208)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHh--------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc---CHHH
Confidence 4455556666667765443211 1111111 11233566777778888888888865533332221 2344
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
++..+...+.++++.++++.-.+|..++...|+....+
T Consensus 151 l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 151 LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 45555556778888888888888888887776654433
No 343
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.28 E-value=4.6e+02 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHh
Q 000050 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2622)
Q Consensus 1693 ~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ 1737 (2622)
....++..+.+.+++++|.+.--++.++..+...+|..|..++..
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 445677777888888899999999999999999999988877644
No 344
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.22 E-value=1.7e+03 Score=29.56 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc-c-cChhhHHHHHHHhhhcCC-HhHHHH
Q 000050 2292 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-S-TRVDPLVGDLLSSLQVSD-AGIREA 2368 (2622)
Q Consensus 2292 al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~-~-~~~~~ll~~Ll~~l~~~d-~~vr~~ 2368 (2622)
.|..++...+..|..+-||+|.+...+.+ ..+.- ..+..-+-.|+.- + ..+...+|.|...+++.+ ...+..
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q----~~p~~-~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~ 256 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQ----LEPEQ-YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILN 256 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcC----CCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHH
Confidence 55667777888899999999988775533 23222 2333333333331 1 236678888888887654 344444
Q ss_pred HH
Q 000050 2369 IL 2370 (2622)
Q Consensus 2369 ~l 2370 (2622)
++
T Consensus 257 Il 258 (851)
T KOG3723|consen 257 IL 258 (851)
T ss_pred HH
Confidence 43
No 345
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=24.61 E-value=1.6e+03 Score=29.00 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHh
Q 000050 2112 SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2112 ~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-----d~d~~V~~~a~~aL~~l~~ 2182 (2622)
.+++.+..++.+.|......+..++|.|++.-..-..-.-.+++..|+.++. |.+.+++-+++.||..++-
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 3888999999999999999999999999876432221122567777777664 5566777888888888754
No 346
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=24.50 E-value=1.2e+03 Score=27.59 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=50.0
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcCC-C-CHHHHHHHHHHHhccccccCCcchHHHHHHHHHHhhC
Q 000050 12 SIAASVSTSSTKRRQRIFRHDVTSLIRNTE-M-SPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLG 79 (2622)
Q Consensus 12 ~~~~~~~~ss~~~R~~~l~~~l~~~~~~~~-~-~~~~~~~l~~~l~~T~~~Y~D~~Sr~~v~~~l~~l~~ 79 (2622)
.+...+.++-.+.|-..+ +.|...++... . ++.+...|.+-||-++=--+.+--+..+-+-|.+++.
T Consensus 4 ~~~k~LAs~d~~~R~~al-~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRAL-KSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHH-HHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 467788899999999999 89999997754 3 7899999999999887554444455555555544433
No 347
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=24.48 E-value=1.6e+02 Score=29.50 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcC
Q 000050 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 2185 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~ 2185 (2622)
..|.+++.+|+.+....+.++.+++|+++..|.....| ...++..+-.+|+.+-+...
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 46788999999999999999999999999999888886 66788888888888866553
No 348
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=24.36 E-value=9.1e+02 Score=27.22 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcccch------hHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHh
Q 000050 1392 SAKRREGALLAFECLCEKLGRLFE------PYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~~~~~~------~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ 1458 (2622)
+...|.-++..+..+.+..|..|. ++. ..+.|.+++.+..+++.+=..+...+..+...+..+ ..+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999988886665 222 267888888887666777777888877777766554 3466
Q ss_pred hHHHHHh-hccCCC--hhhHHHHHHHHHHHHh
Q 000050 1459 VLPSLLK-GLEDKA--WRTKQSSVQLLGAMAY 1487 (2622)
Q Consensus 1459 ilp~Ll~-~L~~~~--w~~r~~a~~~L~~la~ 1487 (2622)
+++.++. .++++. +..|..+++.+..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6676666 344333 3478888999888875
No 349
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.18 E-value=3.5e+02 Score=30.32 Aligned_cols=104 Identities=9% Similarity=0.089 Sum_probs=69.2
Q ss_pred hhhhhHHHHHHHHHHhcCCCCChhhHhhhhhhhcc--cChhhhhhccchhhhHhhhcChhHHHHHHHHhhhcCCCChHHH
Q 000050 208 KCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTH--MSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKY 285 (2622)
Q Consensus 208 ~~K~~~~~~y~k~vl~sK~~p~~~~~~~~~~f~~~--~t~~df~~~ilP~~eKalLRsPE~~l~~~~~l~~~~~~dls~~ 285 (2622)
...+.|++--.+.+++.++.|..+..+.+...... ++-.|..+.|-..++-...-.++++...+..+++=.++. -++
T Consensus 51 ~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s-~~l 129 (158)
T PF14676_consen 51 MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS-PSL 129 (158)
T ss_dssp GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-HHH
Confidence 34667888888889999998888889999999885 566678888888888888888888777666665433322 112
Q ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHH
Q 000050 286 ATEILSVVLSQVRHADEGRKTGALTII 312 (2622)
Q Consensus 286 ~~~l~~~~~s~lkS~~~~~R~~a~~~~ 312 (2622)
-..++..+=..+.|.+...|.-|+.-|
T Consensus 130 rd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 130 RDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 233566666677788888898888754
No 350
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=23.86 E-value=1.3e+03 Score=27.75 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHcc
Q 000050 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240 (2622)
Q Consensus 2161 ~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~ 2240 (2622)
+++|+|+.|.+.+..+.+.+.... +..+ ......... | ..+..+-..++..+.+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~--------~~~i---~~~~~~~~~--W-------------~~~~~lK~~Il~~~~~ 54 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLV--------FRWI---CVNPSDEQL--W-------------ESMNELKDRILSLWDS 54 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHH--------HHHH---S--HHHHHH--H-------------HHHHHHHHHHHHGGGS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHH--------HHHH---cCCchHHHH--H-------------HHHHHHHHHHHHHhcC
Confidence 467888999988888888775432 1111 000000000 0 0111222334445666
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhh-----------------------------hhhhhhhhhHHHHHhhcCCC-CHhhHH
Q 000050 2241 GSAELREQAALGLGELIEVTSEQS-----------------------------LKEFVIPITGPLIRIIGDRF-PWQVKS 2290 (2622)
Q Consensus 2241 ~~~~~r~~aa~~L~~l~~~~~~~~-----------------------------l~p~v~~i~~~Li~~l~~~~-~~~vk~ 2290 (2622)
+++.+|..+.+.+..++....... +..-...+.+-|+..+.+.. +...-.
T Consensus 55 ~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~ 134 (239)
T PF11935_consen 55 ENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLT 134 (239)
T ss_dssp SSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 777888888888888775422111 11112234455666666543 566777
Q ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHHH
Q 000050 2291 AILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320 (2622)
Q Consensus 2291 ~al~~L~~L~~~~~~~l~p~l~~L~~~llk 2320 (2622)
+++.+|+.|+++-|. |.+.+.+.+..
T Consensus 135 a~insL~~Iak~RP~----~~~~Il~~ll~ 160 (239)
T PF11935_consen 135 AIINSLSNIAKQRPQ----FMSRILPALLS 160 (239)
T ss_dssp HHHHHHHHHHHHSGG----GHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH----HHHHHHHHHHh
Confidence 888888888877553 34555554443
No 351
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=23.06 E-value=4.6e+02 Score=29.27 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC
Q 000050 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2622)
Q Consensus 1713 R~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d 1748 (2622)
+......+..+...++.-|.||...+++.....|..
T Consensus 84 ~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 84 LITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888899999999999887777653
No 352
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=22.40 E-value=9.5e+02 Score=29.31 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=78.6
Q ss_pred ChhhHHHHHHHHHHHHhhCchh--------hhhhhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcC---ChhH---
Q 000050 1471 AWRTKQSSVQLLGAMAYCAPQQ--------LSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIK---NPEI--- 1535 (2622)
Q Consensus 1471 ~w~~r~~a~~~L~~la~~~p~~--------l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~---~~~i--- 1535 (2622)
.|+.-+.+..+|+.++...+.. -...+..+-..++..|.. .|.-+-+.+..++..+++.+. ++.+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 4777788888888887543211 111223333333433322 355566667777777776654 3333
Q ss_pred -HhHHHHHHhhcCCC-Ch---hHH------HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCC--------HHHHHHH
Q 000050 1536 -ASLVPTLLMGLTDP-ND---HTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS--------AETKKKA 1596 (2622)
Q Consensus 1536 -~~ilp~Ll~~l~d~-~~---~~r------~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~--------~~vr~~a 1596 (2622)
..-+..+++.+..+ .. .+| .++..+....-. ...+.+...+..|.+..+.+. ...+-+|
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~--~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPS--NSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCC--cchhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 33444455555544 22 344 233333321111 111445555555555443321 2456666
Q ss_pred HHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCH
Q 000050 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633 (2622)
Q Consensus 1597 ~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~ 1633 (2622)
..++..+..-..=.....+|+...+..-.+.+.++.|
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~W 254 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDW 254 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 6666665542111134566666666555555555544
No 353
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=22.35 E-value=1.6e+02 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000050 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIA 876 (2622)
Q Consensus 842 ~~~qL~kE~~IR~~v~~~~~~l~~~~~~i~~l~~~ 876 (2622)
.+.+++||.+||++++.+...++...+.|+.+-.+
T Consensus 11 ~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~ 45 (226)
T KOG3067|consen 11 LQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQN 45 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998888887643
No 354
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=21.97 E-value=95 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC
Q 000050 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 1510 (2622)
Q Consensus 1472 w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D 1510 (2622)
|.+|+.++..|+.+.. +..++.|.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 6788889999988732 4455667777766
No 355
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.81 E-value=4.1e+02 Score=28.13 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccchHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhHhhcCCHHHH-HHHHHHHHH-
Q 000050 324 ALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVK-LAILSAVAS- 401 (2622)
Q Consensus 324 ~~~~~~~~i~~~l~~~~gkl~~~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l-~~~l~~l~~- 401 (2622)
.+..++-.+..-|+. + ..+|.|++-|-.+..|+...+ +++++++.+...+.+-.++... ...+-++..
T Consensus 3 ~l~~lLP~l~~~L~~--s--~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l 72 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKS--S--SSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETVQRQALICLIVL 72 (121)
T ss_pred HHHHHHHHHHHHHcc--C--CcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 344555556666664 2 445999999999999987664 4555556655544443333333 445555554
Q ss_pred HHHh-ccCcccHHHHHHHHh
Q 000050 402 WAKR-SADIIQSDLLSFFAS 420 (2622)
Q Consensus 402 ~~~~-~~~~~~~~~~~~~~k 420 (2622)
|=.+ ....+|+.+++.|.+
T Consensus 73 ~q~q~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 73 CQSQENVDSLPRKVFKALLK 92 (121)
T ss_pred HHcccccccCCHHHHHHHHc
Confidence 5444 445677777766554
No 356
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=21.79 E-value=1.1e+02 Score=24.73 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000050 2517 ILASVVSALHDDSSEVRRRALSALKSVA 2544 (2622)
Q Consensus 2517 ~l~~l~~~l~d~s~dvr~~a~~~l~~~a 2544 (2622)
.++.++..+++++.++++.++.+|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777777889999999999999876
No 357
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=20.96 E-value=1.8e+03 Score=28.19 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=76.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhhccC-------hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc--cc
Q 000050 2076 LPALLSAMGDDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK--LY 2146 (2622)
Q Consensus 2076 l~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~--~~ 2146 (2622)
+..+.++...++=++...+..++..++.... ..+.+.+.......+.+++--+|+.++.+||.+..... .-
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~v 245 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNV 245 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHH
Confidence 3335566667777777777777776655322 24467788888888999999999999999999975332 11
Q ss_pred ccccH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000050 2147 LVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2622)
Q Consensus 2147 l~~~~--~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~ 2184 (2622)
+..|+ ++-+..++.++.|....++-.|...+.-++..-
T Consensus 246 m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 246 MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 23333 677888999999999999999999888877653
No 358
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=2.8e+03 Score=30.17 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCCCch--hhHhHHHHHHHHHhhCCcccc---CChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000050 2427 LADLLQELLNLASSPSWA--ARHGSVLVFATFLRHNPSAIS---MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2622)
Q Consensus 2427 ~~~~l~~ll~~~~~~~~~--~r~~~~~~L~~~l~~~~~~i~---~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2622)
+..++++++.....+.+. .......++..+++..|...- ..++..+++.. +.-.+..+-..+++.+-.+-+
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A----m~~~n~s~P~SaiRVlH~Lse 2076 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA----MCLQNTSAPRSAIRVLHELSE 2076 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH----HHhcCCcCcHHHHHHHHHHhh
Confidence 445555554432222221 222344566677777775432 22344444443 333333333555555544433
Q ss_pred h--hhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc-hhhhhhH-hhHHHHHHhhhcCC---cchhh
Q 000050 2502 H--QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP-SAIMVHV-ALFGPALAECLKDG---STPVR 2574 (2622)
Q Consensus 2502 ~--~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~-~~v~~~l-~~l~p~l~~~~~~~---~~~vk 2574 (2622)
. |.+.- ...+.+..++.+++. -.+.--+|+.+++++-++.. +.|.+-| -.++|-|++.+... +..-.
T Consensus 2077 n~~C~~AM-----A~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~ 2150 (2235)
T KOG1789|consen 2077 NQFCCDAM-----AQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNG 2150 (2235)
T ss_pred ccHHHHHH-----hccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCch
Confidence 2 11110 001223334444332 22333488888988887654 4466655 45888888877642 33445
Q ss_pred chhHHHHHHHhcccc
Q 000050 2575 LAAERCAVHAFQLTR 2589 (2622)
Q Consensus 2575 ~aae~a~~~~~~~~~ 2589 (2622)
.|++.-++..++...
T Consensus 2151 aas~A~Iv~aLk~~~ 2165 (2235)
T KOG1789|consen 2151 AAARAEIVDALKSAI 2165 (2235)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566655655555443
No 359
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=20.27 E-value=1.9e+03 Score=28.31 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH--HHHHhcCC
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGI 2305 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~ 2305 (2622)
..++--+++.........+-.-..-|+++.+.+.+..++..+..+...+-+.++.. +-+|-.-|+..++ .+..-+..
T Consensus 298 ~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~-HFQVAEraL~~wnNe~i~~Li~~ 376 (457)
T KOG2085|consen 298 ETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP-HFQVAERALYLWNNEYIRSLISQ 376 (457)
T ss_pred HHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh-hHHHHHHHHHHHhhHHHHHHHHh
Confidence 33444444444333322222345668888888887778777766666666666543 5566666666554 23333334
Q ss_pred CccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhc
Q 000050 2306 ALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV 2360 (2622)
Q Consensus 2306 ~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~ 2360 (2622)
...-++|-+.+.+.+.-+.- |..+...+...+..++.+++ .++.++....+.
T Consensus 377 n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~---~LFeec~~~y~~ 429 (457)
T KOG2085|consen 377 NAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDP---KLFEECLALYKE 429 (457)
T ss_pred ccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHH
Confidence 44566777778777765543 88899889999988877664 466676666543
Done!