Query 000050
Match_columns 2622
No_of_seqs 750 out of 3872
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 3.6E-49 1.2E-53 592.2 88.2 1014 1420-2606 6-1115(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 6.5E-49 2.2E-53 589.3 79.5 1089 1338-2616 7-1209(1230)
3 2bpt_A Importin beta-1 subunit 100.0 1.3E-33 4.6E-38 410.3 75.6 742 1132-1994 6-857 (861)
4 4fdd_A Transportin-1; heat rep 100.0 5.2E-33 1.8E-37 401.0 72.8 727 1133-1947 16-819 (852)
5 2bpt_A Importin beta-1 subunit 100.0 1.5E-31 5E-36 388.9 80.3 751 1509-2342 15-857 (861)
6 4fdd_A Transportin-1; heat rep 100.0 5E-32 1.7E-36 390.7 72.8 707 1508-2358 22-801 (852)
7 1qgr_A Protein (importin beta 100.0 4.1E-32 1.4E-36 395.4 70.7 749 1505-2345 7-874 (876)
8 1qgr_A Protein (importin beta 100.0 1.2E-31 4.1E-36 390.5 73.0 734 1584-2423 9-874 (876)
9 1b3u_A Protein (protein phosph 100.0 1.2E-31 4.2E-36 371.8 51.1 566 1337-1992 10-585 (588)
10 1b3u_A Protein (protein phosph 100.0 3.4E-29 1.2E-33 347.2 52.5 566 1501-2181 12-586 (588)
11 2iw3_A Elongation factor 3A; a 99.9 7.9E-22 2.7E-26 269.6 29.5 310 1338-1652 15-328 (986)
12 1wa5_C Importin alpha RE-expor 99.9 7.4E-18 2.5E-22 244.9 57.7 645 1057-1765 5-790 (960)
13 2x19_B Importin-13; nuclear tr 99.8 1.1E-16 3.9E-21 234.2 64.8 726 1056-1896 23-875 (963)
14 2x1g_F Cadmus; transport prote 99.8 2.3E-17 7.9E-22 241.2 53.8 717 1057-1915 7-859 (971)
15 1wa5_C Importin alpha RE-expor 99.8 4.3E-16 1.5E-20 226.4 63.4 709 1133-1975 8-868 (960)
16 1ibr_B P95, importin beta-1 su 99.8 2.7E-17 9.1E-22 220.2 34.5 391 1583-2012 8-460 (462)
17 1ibr_B P95, importin beta-1 su 99.8 3.8E-17 1.3E-21 218.7 35.8 395 1132-1546 3-460 (462)
18 3m1i_C Exportin-1; heat repeat 99.8 7.8E-15 2.7E-19 215.0 53.6 753 1048-1954 7-880 (1049)
19 3now_A UNC-45 protein, SD10334 99.7 3.5E-14 1.2E-18 192.9 54.9 675 1708-2504 20-785 (810)
20 2x19_B Importin-13; nuclear tr 99.7 6.9E-13 2.4E-17 194.1 69.4 696 1576-2423 25-849 (963)
21 3now_A UNC-45 protein, SD10334 99.7 1.5E-13 5E-18 186.8 52.5 677 1855-2590 19-786 (810)
22 2x1g_F Cadmus; transport prote 99.7 1.4E-13 4.7E-18 201.2 56.4 696 1588-2421 19-859 (971)
23 2vgl_B AP-2 complex subunit be 99.7 5.2E-14 1.8E-18 192.5 46.5 508 1889-2545 17-532 (591)
24 2vgl_B AP-2 complex subunit be 99.7 2.2E-14 7.4E-19 196.3 42.7 470 1381-1948 52-528 (591)
25 4hat_C Exportin-1; heat repeat 99.7 1.1E-12 3.6E-17 186.8 60.9 784 1047-1977 6-911 (1023)
26 3ibv_A Exportin-T; karyopherin 99.7 2.3E-12 7.7E-17 183.6 62.2 757 1056-1920 5-930 (980)
27 2z6g_A B-catenin; FULL-length, 99.6 8.4E-14 2.9E-18 195.9 37.1 540 1887-2564 117-683 (780)
28 3m1i_C Exportin-1; heat repeat 99.6 1.5E-11 5.1E-16 180.3 60.2 702 1588-2342 28-878 (1049)
29 2jdq_A Importin alpha-1 subuni 99.6 1.3E-13 4.6E-18 183.5 34.5 393 1501-1993 22-442 (450)
30 2jdq_A Importin alpha-1 subuni 99.6 2.6E-13 9E-18 180.6 34.0 344 1380-1727 22-392 (450)
31 3gjx_A Exportin-1; transport, 99.6 6.4E-11 2.2E-15 167.0 58.2 761 1047-1954 18-906 (1073)
32 3ibv_A Exportin-T; karyopherin 99.6 6.5E-10 2.2E-14 158.5 69.3 810 1577-2555 8-934 (980)
33 2z6g_A B-catenin; FULL-length, 99.6 1.8E-12 6.3E-17 182.3 41.8 506 1421-1997 116-666 (780)
34 4b8j_A Importin subunit alpha- 99.6 1.7E-12 5.8E-17 176.4 38.1 387 1339-1764 76-494 (528)
35 1wa5_B Importin alpha subunit; 99.6 6.1E-13 2.1E-17 180.6 33.2 383 1418-1803 85-509 (530)
36 2qk1_A Protein STU2; STU2P, XM 99.5 1.3E-13 4.6E-18 165.0 21.4 195 1348-1542 26-234 (249)
37 1wa5_B Importin alpha subunit; 99.5 1.6E-12 5.3E-17 176.6 34.3 389 1576-1993 87-509 (530)
38 2qk2_A LP04448P; mini spindles 99.5 2.5E-13 8.4E-18 163.7 21.6 194 1342-1540 20-217 (242)
39 4b8j_A Importin subunit alpha- 99.5 5.6E-12 1.9E-16 171.2 36.9 384 1380-1802 76-494 (528)
40 2z6h_A Catenin beta-1, beta-ca 99.5 1.1E-11 3.6E-16 172.3 39.5 460 1301-1803 15-526 (644)
41 4hat_C Exportin-1; heat repeat 99.5 7.1E-09 2.4E-13 147.7 68.2 771 1421-2285 17-913 (1023)
42 2z6h_A Catenin beta-1, beta-ca 99.5 2.9E-11 9.9E-16 167.9 42.9 466 1378-1878 14-532 (644)
43 1w63_A Adapter-related protein 99.5 8.5E-12 2.9E-16 171.0 36.9 504 1426-1992 40-575 (618)
44 1jdh_A Beta-catenin; beta-cate 99.5 1.2E-11 4.2E-16 168.2 37.9 458 1301-1802 18-528 (529)
45 1jdh_A Beta-catenin; beta-cate 99.5 2.7E-11 9.2E-16 164.9 40.1 466 1460-1992 19-528 (529)
46 1w63_A Adapter-related protein 99.5 1.3E-10 4.4E-15 159.3 43.3 476 1332-1873 65-577 (618)
47 3ul1_B Importin subunit alpha- 99.4 8.5E-11 2.9E-15 157.7 33.5 393 1422-1873 59-478 (510)
48 2vgl_A Adaptor protein complex 99.4 6.1E-10 2.1E-14 151.8 40.7 525 1887-2545 37-589 (621)
49 3tpo_A Importin subunit alpha- 99.4 2E-10 6.9E-15 155.1 34.8 394 1421-1873 77-497 (529)
50 2vgl_A Adaptor protein complex 99.4 3.7E-10 1.3E-14 153.8 36.6 479 1453-1992 69-587 (621)
51 3ul1_B Importin subunit alpha- 99.3 1.9E-10 6.6E-15 154.3 32.5 383 1340-1762 60-474 (510)
52 2qk2_A LP04448P; mini spindles 99.3 1.9E-11 6.4E-16 147.2 20.4 203 1774-2007 14-218 (242)
53 3tpo_A Importin subunit alpha- 99.3 5E-10 1.7E-14 151.2 35.1 383 1340-1762 79-493 (529)
54 2qk1_A Protein STU2; STU2P, XM 99.3 3.3E-11 1.1E-15 144.3 18.5 200 1462-1662 20-234 (249)
55 3gjx_A Exportin-1; transport, 99.3 1E-06 3.5E-11 124.7 65.7 384 1855-2285 490-937 (1073)
56 1oyz_A Hypothetical protein YI 99.2 2E-09 6.8E-14 132.8 25.4 244 1380-1675 25-270 (280)
57 4ady_A RPN2, 26S proteasome re 99.1 3.4E-06 1.2E-10 114.6 56.3 306 2076-2456 394-717 (963)
58 1oyz_A Hypothetical protein YI 99.1 2.4E-09 8.1E-14 132.1 23.6 250 1421-1719 24-276 (280)
59 2iw3_A Elongation factor 3A; a 99.1 1.5E-09 5.3E-14 149.2 23.5 285 1674-1997 30-327 (986)
60 3a6p_A Exportin-5; exportin-5, 99.1 1.1E-07 3.7E-12 139.7 42.1 534 1057-1668 11-682 (1204)
61 4ady_A RPN2, 26S proteasome re 99.1 7.8E-06 2.7E-10 111.1 54.5 261 1858-2180 451-717 (963)
62 3ltj_A Alpharep-4; protein eng 99.0 1.3E-08 4.4E-13 118.5 20.0 189 1414-1647 8-197 (201)
63 3ltm_A Alpha-REP4; protein eng 98.9 2E-08 6.8E-13 117.9 20.3 185 1420-1649 19-204 (211)
64 3opb_A SWI5-dependent HO expre 98.9 5.3E-06 1.8E-10 110.6 44.1 474 1121-1650 160-730 (778)
65 4gmo_A Putative uncharacterize 98.9 3.7E-09 1.3E-13 146.1 14.9 220 1922-2152 34-270 (684)
66 2db0_A 253AA long hypothetical 98.9 1E-07 3.5E-12 99.7 20.0 215 2111-2378 31-246 (253)
67 3opb_A SWI5-dependent HO expre 98.9 2.8E-05 9.4E-10 103.8 48.4 554 1378-1994 132-728 (778)
68 4hxt_A De novo protein OR329; 98.8 2.3E-07 7.8E-12 112.1 24.3 237 1379-1653 3-246 (252)
69 1vsy_5 Proteasome activator BL 98.8 7.5E-06 2.6E-10 115.1 42.1 764 1412-2342 125-966 (997)
70 4db8_A Armadillo-repeat protei 98.8 1.1E-07 3.7E-12 115.1 20.5 231 1379-1647 13-250 (252)
71 3ltj_A Alpharep-4; protein eng 98.8 1.1E-07 3.7E-12 110.7 19.1 184 1378-1605 14-198 (201)
72 3ltm_A Alpha-REP4; protein eng 98.8 9.4E-08 3.2E-12 112.1 18.7 185 1378-1606 19-204 (211)
73 1xm9_A Plakophilin 1; armadill 98.8 2.5E-07 8.7E-12 121.9 24.9 339 1459-1802 3-447 (457)
74 3l6x_A Catenin delta-1; cateni 98.7 3.1E-06 1.1E-10 111.7 31.7 351 1301-1687 49-476 (584)
75 1xm9_A Plakophilin 1; armadill 98.7 1.4E-06 4.6E-11 114.9 28.6 342 1380-1724 4-448 (457)
76 4hxt_A De novo protein OR329; 98.7 7.6E-07 2.6E-11 107.5 23.2 234 1698-1997 4-244 (252)
77 3l6x_A Catenin delta-1; cateni 98.7 2.1E-06 7.1E-11 113.4 28.5 343 1459-1803 49-475 (584)
78 4db8_A Armadillo-repeat protei 98.7 1.2E-07 4.1E-12 114.7 15.3 225 1302-1528 14-251 (252)
79 3a6p_A Exportin-5; exportin-5, 98.7 5.1E-05 1.7E-09 111.5 45.5 545 1589-2201 26-681 (1204)
80 3oc3_A Helicase MOT1, MOT1; re 98.6 4.2E-07 1.4E-11 111.2 17.1 249 1338-1675 175-424 (800)
81 1vsy_5 Proteasome activator BL 98.6 9.7E-06 3.3E-10 113.9 32.3 692 1847-2590 136-970 (997)
82 3nmz_A APC variant protein; pr 98.6 5.5E-06 1.9E-10 107.1 27.6 339 1460-1804 34-450 (458)
83 2of3_A ZYG-9; multifunctional 98.6 2.3E-06 8E-11 100.4 20.8 174 1349-1533 57-241 (266)
84 4ffb_C Protein STU2; tubulin f 98.5 9.7E-07 3.3E-11 108.1 18.3 194 1780-1998 14-216 (278)
85 3nmz_A APC variant protein; pr 98.5 3.3E-06 1.1E-10 109.1 23.3 309 1457-1768 69-452 (458)
86 4db6_A Armadillo repeat protei 98.5 2.1E-06 7E-11 100.5 18.9 192 1420-1648 12-209 (210)
87 3oc3_A Helicase MOT1, MOT1; re 98.5 2E-06 7E-11 105.4 18.6 211 1301-1527 175-403 (800)
88 4db6_A Armadillo repeat protei 98.5 1.9E-06 6.4E-11 100.8 16.8 186 1342-1528 16-209 (210)
89 2of3_A ZYG-9; multifunctional 98.4 9.8E-06 3.3E-10 95.2 21.9 189 1778-2002 49-244 (266)
90 4ffb_C Protein STU2; tubulin f 98.4 4.1E-06 1.4E-10 102.5 17.9 187 1463-1653 14-217 (278)
91 2db0_A 253AA long hypothetical 98.3 0.00012 3.9E-09 77.2 24.1 215 1299-1527 31-245 (253)
92 3b2a_A TON_1937, putative unch 98.1 0.00015 5.2E-09 80.4 21.3 219 1737-1990 33-257 (265)
93 1xqr_A HSPBP1 protein; armadil 98.1 8.8E-05 3E-09 90.4 21.1 177 1394-1606 55-239 (296)
94 3nmw_A APC variant protein; AR 98.1 0.0001 3.4E-09 92.5 21.8 257 1473-1768 47-336 (354)
95 3nmw_A APC variant protein; AR 98.0 9.6E-05 3.3E-09 92.7 19.6 218 1313-1531 97-337 (354)
96 3b2a_A TON_1937, putative unch 98.0 0.0025 8.7E-08 70.9 27.0 218 1378-1642 33-255 (265)
97 1xqr_A HSPBP1 protein; armadil 98.0 7.4E-05 2.5E-09 91.1 16.8 174 1354-1529 56-239 (296)
98 3tjz_B Coatomer subunit gamma; 97.8 0.00016 5.4E-09 89.3 15.2 279 1883-2177 66-348 (355)
99 3tjz_B Coatomer subunit gamma; 97.7 0.0012 4.2E-08 81.4 21.3 269 1346-1643 76-348 (355)
100 1te4_A Conserved protein MTH18 97.4 1.4E-05 4.7E-10 85.4 -1.1 119 1378-1525 12-130 (131)
101 3grl_A General vesicular trans 97.3 0.054 1.8E-06 70.7 29.8 70 2230-2301 312-394 (651)
102 3grl_A General vesicular trans 97.3 0.32 1.1E-05 63.7 36.6 211 1335-1547 19-264 (651)
103 4gmo_A Putative uncharacterize 97.3 0.51 1.7E-05 64.9 41.7 88 1458-1546 35-128 (684)
104 1te4_A Conserved protein MTH18 97.2 5.9E-05 2E-09 80.4 1.0 111 1419-1554 11-121 (131)
105 1lrv_A LRV, leucine-rich repea 97.1 5.5E-05 1.9E-09 88.7 -0.7 184 1346-1644 58-242 (244)
106 3u0r_A Apoptosis inhibitor 5; 97.1 0.33 1.1E-05 60.4 31.0 297 2240-2551 39-364 (507)
107 1lrv_A LRV, leucine-rich repea 97.0 0.0002 7E-09 83.9 2.8 185 1506-1800 57-242 (244)
108 3tt9_A Plakophilin-2; cell adh 96.6 0.012 4.2E-07 68.3 13.5 192 1457-1649 7-230 (233)
109 3l9t_A Putative uncharacterize 96.6 0.057 1.9E-06 61.2 18.0 185 2345-2557 33-219 (240)
110 3tt9_A Plakophilin-2; cell adh 96.1 0.22 7.5E-06 57.8 20.2 185 2155-2377 10-228 (233)
111 3l9t_A Putative uncharacterize 95.9 0.086 2.9E-06 59.8 14.3 142 1617-1769 69-210 (240)
112 3u0r_A Apoptosis inhibitor 5; 95.6 2.2 7.6E-05 53.2 26.3 262 2087-2401 41-322 (507)
113 3o2t_A Symplekin; heat repeat, 94.5 3.5 0.00012 51.1 24.0 237 2364-2609 40-324 (386)
114 3o2t_A Symplekin; heat repeat, 92.5 15 0.00052 45.4 25.0 144 2090-2259 41-184 (386)
115 3gs3_A Symplekin, LD45768P; he 92.1 18 0.00061 42.3 23.7 141 2089-2258 30-173 (257)
116 1lsh_A Lipovitellin (LV-1N, LV 92.1 3.4 0.00012 59.5 21.5 154 1432-1606 407-577 (1056)
117 4atg_A TAF6; transcription, TF 89.6 2.4 8.1E-05 47.1 12.4 116 2225-2341 36-161 (196)
118 4atg_A TAF6; transcription, TF 86.9 28 0.00097 38.6 18.7 105 1591-1701 61-173 (196)
119 3gs3_A Symplekin, LD45768P; he 85.3 62 0.0021 37.7 24.0 192 2354-2550 20-248 (257)
120 1vsy_4 Proteasome activator BL 85.2 34 0.0012 47.0 22.6 265 2227-2502 337-688 (799)
121 1vsy_4 Proteasome activator BL 84.7 43 0.0015 46.0 23.2 277 1456-1746 337-666 (799)
122 3jxy_A Alkylpurine DNA glycosy 82.9 9.6 0.00033 44.1 13.6 143 2394-2557 64-207 (232)
123 1lsh_A Lipovitellin (LV-1N, LV 82.8 53 0.0018 47.1 24.1 174 2152-2378 390-576 (1056)
124 2b6c_A Hypothetical protein EF 78.2 11 0.00037 43.2 11.8 141 2394-2555 58-198 (220)
125 3fga_B Serine/threonine-protei 77.2 79 0.0027 39.2 19.4 98 2248-2346 270-370 (403)
126 1upk_A MO25 protein; transfera 75.2 1.5E+02 0.0051 35.7 22.5 191 1619-1875 78-285 (341)
127 1ho8_A Vacuolar ATP synthase s 69.6 2.4E+02 0.0083 35.7 21.4 55 1898-1952 418-476 (480)
128 2npp_B PP2A, B subunit, serine 69.2 96 0.0033 39.1 17.8 228 2349-2589 162-402 (449)
129 1w9c_A CRM1 protein, exportin 66.6 58 0.002 39.0 14.4 136 2244-2381 44-199 (321)
130 2b6c_A Hypothetical protein EF 66.2 46 0.0016 38.0 13.3 139 1341-1495 58-196 (220)
131 3ldz_A STAM-1, signal transduc 65.1 33 0.0011 36.0 10.7 73 1377-1450 41-115 (140)
132 3ldz_A STAM-1, signal transduc 63.9 53 0.0018 34.4 12.0 80 2107-2186 37-118 (140)
133 2npp_B PP2A, B subunit, serine 63.8 1.3E+02 0.0046 37.8 17.6 103 2248-2358 303-412 (449)
134 1mhq_A ADP-ribosylation factor 60.5 50 0.0017 35.0 11.1 74 1377-1451 37-118 (148)
135 1x5b_A Signal transducing adap 60.1 48 0.0016 35.8 11.1 72 1378-1450 52-126 (163)
136 3g2s_A C-terminal fragment of 58.8 58 0.002 34.5 11.2 74 1377-1451 47-128 (149)
137 1w9c_A CRM1 protein, exportin 58.1 1.1E+02 0.0038 36.7 14.7 102 1705-1806 82-198 (321)
138 1upk_A MO25 protein; transfera 55.3 3.4E+02 0.012 32.6 20.6 149 1378-1529 78-239 (341)
139 1juq_A ADP-ribosylation factor 52.1 69 0.0024 34.8 10.7 73 1378-1451 50-130 (171)
140 1elk_A Target of MYB1; superhe 51.6 89 0.003 33.4 11.4 106 1338-1450 16-131 (157)
141 1x5b_A Signal transducing adap 51.1 79 0.0027 34.1 10.9 80 2107-2186 47-129 (163)
142 3dad_A FH1/FH2 domain-containi 50.2 2.1E+02 0.0072 34.4 15.2 140 2285-2425 131-291 (339)
143 4flb_A Regulation of nuclear P 49.2 1.3E+02 0.0043 31.1 12.0 107 2315-2425 10-119 (132)
144 1juq_A ADP-ribosylation factor 45.3 82 0.0028 34.2 10.0 80 2107-2186 45-132 (171)
145 3zyq_A Hepatocyte growth facto 44.5 1.3E+02 0.0044 34.4 12.0 105 1339-1451 9-120 (226)
146 3g2s_A C-terminal fragment of 43.1 2.2E+02 0.0077 30.0 12.6 74 1459-1532 49-130 (149)
147 3ut4_A CTHE_2751, putative unc 42.2 1.1E+02 0.0039 31.4 9.6 87 1450-1550 23-109 (134)
148 1mhq_A ADP-ribosylation factor 42.1 1.7E+02 0.0059 30.8 11.7 88 1680-1768 23-118 (148)
149 3s4w_B Protein FACD2, fanconi 41.1 1E+03 0.036 34.2 33.7 141 2356-2503 407-551 (1323)
150 3zyq_A Hepatocyte growth facto 39.1 2.3E+02 0.0079 32.3 13.1 82 2106-2187 39-123 (226)
151 3dad_A FH1/FH2 domain-containi 36.4 6.4E+02 0.022 30.3 19.1 141 1392-1532 131-290 (339)
152 1vdy_A Hypothetical protein (R 35.7 1.1E+02 0.0039 31.8 8.7 59 1682-1740 35-93 (140)
153 1dvp_A HRS, hepatocyte growth 34.9 1.5E+02 0.005 33.8 10.5 102 1340-1449 7-115 (220)
154 1vdy_A Hypothetical protein (R 34.6 1E+02 0.0035 32.1 8.1 75 2108-2182 45-130 (140)
155 1elk_A Target of MYB1; superhe 34.3 4.4E+02 0.015 28.0 13.5 79 2107-2185 48-133 (157)
156 1ho8_A Vacuolar ATP synthase s 33.9 8.3E+02 0.028 30.9 28.3 28 2393-2420 449-476 (480)
157 3jxy_A Alkylpurine DNA glycosy 33.7 3E+02 0.01 31.4 13.1 131 1304-1450 65-196 (232)
158 2jak_A Serine/threonine-protei 30.9 3.4E+02 0.012 33.4 13.3 211 2348-2567 173-391 (392)
159 3s4w_B Protein FACD2, fanconi 29.9 1.5E+03 0.051 32.7 34.5 113 1413-1527 393-506 (1323)
160 2kw3_C Regulatory factor X-ass 29.7 16 0.00053 30.7 0.8 17 252-268 20-36 (62)
161 1sz9_A PCF11 protein; RNA poly 29.4 3.8E+02 0.013 28.0 11.7 76 2346-2421 40-115 (144)
162 1dvp_A HRS, hepatocyte growth 27.3 5.9E+02 0.02 28.6 13.9 79 2107-2185 37-118 (220)
163 4flb_A Regulation of nuclear P 24.7 3.8E+02 0.013 27.3 10.8 85 2072-2162 6-94 (132)
164 3fga_B Serine/threonine-protei 23.6 1.1E+03 0.038 29.0 23.8 247 1935-2186 96-370 (403)
165 1sz9_A PCF11 protein; RNA poly 21.0 5.5E+02 0.019 26.8 11.0 73 1921-1993 41-113 (144)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.6e-49 Score=592.18 Aligned_cols=1014 Identities=17% Similarity=0.186 Sum_probs=760.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
.-++.++..+.++++.+|..|...+...... +++...+.+++.+++.+.+++|.+|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999987776655431 22234578899999999999999999999999999987665 4
Q ss_pred hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhh
Q 000050 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. +. ........
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5688999999999999999999999999999877653210 00 00112345
Q ss_pred hHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000050 1576 LLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~ 1654 (2622)
.++|.+.+.+.+ .++.+|..++.+++.++...+ +.+.||++.+++.+...+.++++.||..|+.+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 677888888874 778999999999999998654 47889999999999999999999999999999999999988888
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcch
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 1731 (2622)
++.+++.+++.+.++.....|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 89999999999987654446778899999999988764 347889999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhhcCCC-------------------------------------ChHHHHHHHHHHHHHHHHhhh---c
Q 000050 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2622)
Q Consensus 1732 ~p~l~~ii~~ll~~L~d~-------------------------------------~~~VR~~al~al~~lv~~~~~---~ 1771 (2622)
.||++.++|.++..+.++ ...+|.+|..++..+....+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888887765543 2
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC-CCCcccHHHHHHHHHHHhChhhHHHHHHHHH
Q 000050 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS-DDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~-dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~ 1850 (2622)
.++.++|.+...+.|.++.+|..++..++.++...+...+ ...+.. -....+. ...+. ...+.+++.+.
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~-----~~l~~ll~~l~ 440 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS--WLCDPDAMEQGETP---LTMLQ-----SQVPNIVKALH 440 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------------CCCH---HHHHH-----HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc--cccCccccccccch---HHHHH-----HHhhHHHHHHH
Confidence 4556778888888888888999999998888766532110 000000 0000000 01111 12345666666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhccc----hhhhH
Q 000050 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSI 1924 (2622)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~--~~R~~A~~~L~~lv~~~~~~----~l~~l 1924 (2622)
..+.|.++.+|..++..++.++...+..+.++++.+++.+...+.+++. .+|..++..++.++...|.. +++.+
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 520 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH
Confidence 6688999999999999999999988877888999999999999998764 89999999999998877665 56789
Q ss_pred HHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh------hhHHHhHHhHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHh
Q 000050 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSA 1996 (2622)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~d~~VR~~A~~al~~l~~~~ 1996 (2622)
+|.+...+.|+++.+|..++.+++.++...+. ..+.+|++.++|.+...+ .|.++++|..|..+++.+....
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654 367789999999999999 7889999999999999999988
Q ss_pred Chhh---hhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHH-hCCChhhhH
Q 000050 1997 GMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFHL 2072 (2622)
Q Consensus 1997 g~~~---~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~-~g~~l~~~l 2072 (2622)
|... +..++|.|.+.+.++..+..++.+ ++.++.. .+.++.+++
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~a--------------------------------l~~i~~~~~~~~~~~~~ 648 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKA--------------------------------LTLIAGSPLKIDLRPVL 648 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHHHH--------------------------------HHHHTTCSSCCCCHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHHHH--------------------------------HHHHHhCccccchHHHH
Confidence 8643 344455555555544433333333 3333321 123578999
Q ss_pred hhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh----hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccccc
Q 000050 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2622)
Q Consensus 2073 ~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~ 2148 (2622)
+.++|.+.+.+.++++.+|..+..+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+.
T Consensus 649 ~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~ 728 (1230)
T 1u6g_C 649 GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728 (1230)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH
Confidence 99999999999999999999999999999987753 34555555555667788899999999999999987777777
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCch
Q 000050 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2622)
Q Consensus 2149 ~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 2228 (2622)
++.+.+++.++..+.++. +...+..++..+.+.. .. . + ++ +....
T Consensus 729 ~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~~ 773 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGYM 773 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSHH
T ss_pred HhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCHH
Confidence 778888888888886543 1112222222222110 00 0 0 00 11223
Q ss_pred hhHHHHHHHHcc-----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcC-CCCHhhHHHHHHHHHHHHHh
Q 000050 2229 PLLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2622)
Q Consensus 2229 ~ilp~ll~~L~~-----~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2622)
.+++.+.+.+.. .....+..++.+++.++..+++ .....+..+ +..+.+ ......+..++.+++.++..
T Consensus 774 ~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~ 848 (1230)
T 1u6g_C 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHH 848 (1230)
T ss_dssp HHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhccc
Confidence 333333322221 1234577889999999988873 233333332 333332 13566788888999988775
Q ss_pred cCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCC
Q 000050 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2622)
Q Consensus 2303 ~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2622)
.+ +.+ .|++++++++++.|+++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++...+.
T Consensus 849 ~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 849 ID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp SC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCS
T ss_pred CC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCCh
Confidence 43 344 48899999999999999999999999999975 56778999999999754 67799999999999998776
Q ss_pred CCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCc
Q 000050 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462 (2622)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~ 2462 (2622)
....++...|++.|...+.+.++++|..+++|+|.++...++ ++++.
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p~----------------------------- 969 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLPR----------------------------- 969 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHHH-----------------------------
T ss_pred hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHHH-----------------------------
Confidence 666899999999999999888889999999999999977543 12222
Q ss_pred cccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000050 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS 2542 (2622)
Q Consensus 2463 ~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~ 2542 (2622)
+.+.+.++++.+|..++.++++++..+. +....++..+++.++.+++|++.+||++|+.++++
T Consensus 970 --------------l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 970 --------------LKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp --------------HTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred --------------HHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2233344455566666666665554432 22234667788888899999999999999999999
Q ss_pred HHhhCchhhhhhHhhHHHHHHhhhcCC------------------cchhhchhHHHHHHHhcccccc-hhHHHHHHHhhc
Q 000050 2543 VAKANPSAIMVHVALFGPALAECLKDG------------------STPVRLAAERCAVHAFQLTRGS-EYIQGAQKFITG 2603 (2622)
Q Consensus 2543 ~a~~~~~~v~~~l~~l~p~l~~~~~~~------------------~~~vk~aae~a~~~~~~~~~~~-~~~~~~~~~l~~ 2603 (2622)
+++++|+.+.++++.++|.||+.++.+ +..+|.+|..|+..+++.+.+. +-.+.+..|+.|
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~g 1112 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDG 1112 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHT
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence 999999999999999999999998644 4489999999999999987543 235677789888
Q ss_pred hhh
Q 000050 2604 LDA 2606 (2622)
Q Consensus 2604 ~~~ 2606 (2622)
++-
T Consensus 1113 l~d 1115 (1230)
T 1u6g_C 1113 LKD 1115 (1230)
T ss_dssp TSS
T ss_pred cCc
Confidence 873
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=6.5e-49 Score=589.33 Aligned_cols=1089 Identities=17% Similarity=0.181 Sum_probs=793.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccc--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
.+..+++.+.+ .|...|..|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 7 ~l~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH---
Confidence 45566666543 456778888777766554321111 11225778888888876 899999999999999987764
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhhHHHHHhhcc-CCChhhHHHHHHHHHHH
Q 000050 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 1485 (2622)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~l 1485 (2622)
+++..+++.++..+.|+++.||.++..+++.++..+++. .+..++|.+++.+. +++|.+|.+++.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 58899999999999999
Q ss_pred HhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCC-hhHH-HHHHHHHhc
Q 000050 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 1563 (2622)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~-~~~r-~al~~L~~~ 1563 (2622)
+...+..+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..++|.++..+.+++ ..+| .+++.+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 98888888888999999999999999999999999999999998876666777888877775432 2233 334433321
Q ss_pred -cccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-------------
Q 000050 1564 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 1629 (2622)
Q Consensus 1564 -~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------- 1629 (2622)
......-.+.+..++|.+...+.|.++++|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111112235677899999999999999999999999999998654 4788999999999877663
Q ss_pred ------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhhhcCChHHHHHHHHHH
Q 000050 1630 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2622)
Q Consensus 1630 ------------------------d~~~~vR~~a~~aL~~L~~~~g~---~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L 1682 (2622)
|..|.+|..|+.+++.++...|+ .+++.++|.+...+.+. ...+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKER-EENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCS-SSHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 12467899999999999987664 25677788877776544 356898999999
Q ss_pred HHHHHHhch------------------h----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1683 SEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1683 ~~i~~~~g~------------------~----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
+.++...|. . .++.++|.+.+.+.+.++.+|.+++.+++.++..++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 888876642 1 234556666666899999999999999999999988888999999999
Q ss_pred HHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000050 1741 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2622)
Q Consensus 1741 ~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~----~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2622)
.++..+.|... .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..++....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--- 555 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ--- 555 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS---
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc---
Confidence 99999999865 89999999998888766655 4667899999999999999999999999998866542100
Q ss_pred ccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 000050 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1815 ~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~ 1892 (2622)
...... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 556 ----~~~~~~--------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 556 ----PSSFDA--------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----CCCCCC--------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----ccccch--------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 000000 023345666665555 788999999999999999999988888899999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhc----cchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHH
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1968 (2622)
.+.+. ..|..+..+++.++...+ ..+.+.++|.+...+.++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 88754 478889999998875432 235788999999999999999999999999999887764333334444444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhh
Q 000050 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2622)
Q Consensus 1969 ~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~ 2045 (2622)
.+...+.+.|.+++..+..++..+++..+.. ..+.++|.++..+++...++.+++++..++.
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~--------------- 760 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ--------------- 760 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHH---------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHH---------------
Confidence 4445567888999999999999887655432 2456677777666654433333333322221
Q ss_pred cCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhh
Q 000050 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2622)
Q Consensus 2046 ~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~-----~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~ 2120 (2622)
.+... +.. .+.+..+++.++..+.. .++..+..+..+++.++...++.. ..+++.+...
T Consensus 761 -------------~l~~~-~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~~ 824 (1230)
T 1u6g_C 761 -------------ALVVT-GTN-NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQD 824 (1230)
T ss_dssp -------------HHHTT-CCT-TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTTT
T ss_pred -------------HHHhc-CCC-CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHHH
Confidence 11110 110 23556666666655432 234567778888888887665433 2677777777
Q ss_pred cCC--CChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHH
Q 000050 2121 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2622)
Q Consensus 2121 l~d--~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2622)
+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.||+.++..
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~--------------- 886 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG--------------- 886 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------------
T ss_pred hCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc---------------
Confidence 765 4567788888888887653 23444 367889999999999999999999999998631
Q ss_pred HHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHH
Q 000050 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2622)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~ 2278 (2622)
++..++|.+++++.++ ++.|...+.+|..++...+.+.+.||+.+|++.|
T Consensus 887 ---------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L-- 936 (1230)
T 1u6g_C 887 ---------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALL-- 936 (1230)
T ss_dssp ---------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHH--
T ss_pred ---------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHH--
Confidence 1234567777777654 5567777788888776554444555555444444
Q ss_pred hhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhh
Q 000050 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l 2358 (2622)
++.+.+.++.+|..++.|||.+....+ +.++|.+.+.+
T Consensus 937 ----------------------------------------~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 937 ----------------------------------------LKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp ----------------------------------------TTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred ----------------------------------------HHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 444444455677777777777765443 56777777777
Q ss_pred hcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHH
Q 000050 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 2435 (2622)
Q Consensus 2359 ~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll 2435 (2622)
+++++.+|..++.+++.++...+... .++.+.++..+...+.|++..+|.++..+++.+++..|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 77777788888888877776666554 4567777777778889999999999999999999887752 2333333333
Q ss_pred hhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhH
Q 000050 2436 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2622)
Q Consensus 2436 ~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2622)
+.....+...| ....+ -++|..+++.++|++|+.|+++++.++.+. -.+.
T Consensus 1054 ~~~~~~~~~~~-----------------~v~~g--------p~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR-----------------EVEMG--------PFKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE-----------------EEEET--------TEEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe-----------------eeccC--------CcccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 32111111000 00010 135667788899999999999999997543 2478
Q ss_pred hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHHhhhcC--Ccchh----------hchhHHHHHH
Q 000050 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPV----------RLAAERCAVH 2583 (2622)
Q Consensus 2516 ~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~v----------k~aae~a~~~ 2583 (2622)
++++.++.++.|+ .|+|..+..+|..++..+|..+.++++.+++++.+.+.. +...| ++++.||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999997533 34444 5566699999
Q ss_pred HhcccccchhHHHHHHHhhchhhhhhccCCCcc
Q 000050 2584 AFQLTRGSEYIQGAQKFITGLDARRLSKFPEHR 2616 (2622)
Q Consensus 2584 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 2616 (2622)
+.++++.+ ..+.|.+|+ +++.++|++.
T Consensus 1183 l~~~~~~~-~~~~~~~~~-----~~~~~~~~~~ 1209 (1230)
T 1u6g_C 1183 LLTIPEAE-KSPLMSEFQ-----SQISSNPELA 1209 (1230)
T ss_dssp TTSSCSCS-SSSSCCCCC-----HHHHHHHHHT
T ss_pred HHhCCCcc-cChHHHHHH-----HHHHhCHHHH
Confidence 99888754 334455555 4455555443
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.3e-33 Score=410.29 Aligned_cols=742 Identities=13% Similarity=0.152 Sum_probs=569.5
Q ss_pred hHhHHHHh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000050 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2622)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~--- 1206 (2622)
+..++... .++|..+|+.|.+.|..+.+. .|+.+..++..+.+ . ..+.++|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-------E-----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-------T-----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-------C-----CCChHHHHHHHHHHHhhccCcC
Confidence 35667777 889999999999999886654 24444444333321 0 1245789998888887642
Q ss_pred ------------h-hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhh
Q 000050 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2622)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~ 1272 (2622)
. ++++....+...++ .++.+.++.||..+..++..+....+. ..|+.++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-----~ 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----Q 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----S
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-----C
Confidence 1 44444445666665 567888999999999999888887655 48999999999888652 1
Q ss_pred hhhhhhHHHHHHHHHhhhhccC----CcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhccch------HHHHH
Q 000050 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2622)
Q Consensus 1273 ~~~vr~~~~~~~~~la~~l~~~----~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~~~~------~~~i~ 1340 (2622)
+..+|+.++..++.+.+.+... .+....+++.+...+.++ +++||.++.+|+..++....... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3467889999999998766433 456788999999999998 89999999999998765543221 22444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~------- 1411 (2622)
.+.+ +..++++..|..+..+|..++...+..... .. .+++.+...+.+. +..+|..++..+..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345667899999999999999877643221 11 5677777777776 78999999999999887632
Q ss_pred ----------ccchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
..+.+++..++|.++..+.+ .+..+|.++..++..++..+++..+..++|.+.+.+.+++|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999999874 3458999999999999998887777889999999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhH
Q 000050 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~ 1553 (2622)
|.+++.+++.++.++. +.+..+++.++|.+...+.|+++.||.++++++++++..++...
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------- 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI------------------- 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------------
Confidence 9999999999998764 77888899999999999999999999999999999987654200
Q ss_pred HHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCC--CCcccchHhhhHHHHHHHhcC-
Q 000050 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2622)
Q Consensus 1554 r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2622)
...+.+..++|.+...+.+. +++|..++.++++++...++ +..+.||++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 01123345666677777665 88999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhc--------------CChHHHHHHHHHHHHHHHHhchh
Q 000050 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2622)
Q Consensus 1631 -~~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~--------------~~~~~r~~a~~~L~~i~~~~g~~ 1692 (2622)
.++.+|..++.+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777776532 12235667888899999988874
Q ss_pred ---HHHhHhHHHHHhccCCCh-hhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1693 ---~l~~llp~l~~~l~~~~~-~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
+.+.+++.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.++..+.+++..+|..+..++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888887777 8999999999999999999999999999999999998877788888777776665544
Q ss_pred hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHH
Q 000050 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2622)
Q Consensus 1769 ~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~ 1848 (2622)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11122223
Q ss_pred HHHhccCC--CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000050 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2622)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~-----------~~~R~~A~~~L~~lv~~ 1915 (2622)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999999899999999999999999887432 45789999999999988
Q ss_pred hcc---c---hhhhHHHHHhhhcCCC----ChhhHHhHHHHHHHHHHhhChhhHHHhHH-hHHHHHHHHhc---CCcHHH
Q 000050 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2622)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~d~~V 1981 (2622)
+|. . +.+.+++.+...+.|. +..+|..++.+++.++...++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 3566777777777664 88999999999999998884556777888 88888888765 567899
Q ss_pred HHHHHHHHHHHHH
Q 000050 1982 RESAGLAFSTLFK 1994 (2622)
Q Consensus 1982 R~~A~~al~~l~~ 1994 (2622)
++.|..+.+.+.+
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5.2e-33 Score=400.97 Aligned_cols=727 Identities=15% Similarity=0.187 Sum_probs=557.2
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h---
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~--- 1208 (2622)
..++....++|..+|+.|.+.+..+ ...|+.+..+...+... . +.+..+|..++..|+..... +
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----~------~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----K------SEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----T------TSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----C------CCChHHHHHHHHHHHHHHHHccCCC
Confidence 4455555689999999999998654 44555444443333210 1 23458999999999877642 2
Q ss_pred CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHHHHHHHh
Q 000050 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2622)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~~~~~la 1288 (2622)
+++....+.+.++ .+++|+++.||..+..++..+++..+.+.|++++|.+.+.+... +..+|++++..++.+.
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 2222334555554 67899999999999999999988878889999999999988752 2467889998888888
Q ss_pred hhhccC------CcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc----chHHHHHHHHHHHhcCCChHHHHHH
Q 000050 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRGA 1358 (2622)
Q Consensus 1289 ~~l~~~------~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~----~~~~~i~~Ll~~L~~~~~~~~r~~A 1358 (2622)
+..... ...+..+++.+++.+++++++||..+.+++..++..... ..+.+++.++..+. +++..+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 654321 234778899999999999999999999999887754332 23456666666543 4567899999
Q ss_pred HHHHHHHHhhhCccchh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHc------
Q 000050 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2622)
Q Consensus 1359 a~~L~~l~~~lg~~~l~-~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~--~~~~~~~~v~~ilp~ll~~l------ 1429 (2622)
+.+|..++...+..... -..+++.+.+.+.+. ++.+|..|+..+..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865422111 125788888888876 789999999988888763 23446789999999999988
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1430 -----~D-----------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
+| .+..||.++..+++.++...++..+..++|.+.+.+.+++|+.|.+++.+++.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 45 33468999999999999988877778899999999999999999999999999999998888
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhh
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~ 1573 (2622)
..+++.++|.+...++|+++.||.+|+++++.+++.++.. ...+.
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-----------------------------------PPDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-----------------------------------CTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHH
Confidence 8999999999999999999999999999999998754310 01123
Q ss_pred hhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1574 l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
+..+++.+.+.+.|.++.+|..|+.+++++++..+. .+.||++.+++.+...+.+........+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 345677777788888899999999999999987653 689999999999999999887788888999999999888754
Q ss_pred -----CchhhHHHHHHH---hhhcCChHHHHHHHHHHHHHHHHhchhH---HHhHhHHHHHhcc----------------
Q 000050 1654 -----NFPDLVSWLLDA---LKSDNSNVERSGAAQGLSEVLAALGTVY---FEHILPDIIRNCS---------------- 1706 (2622)
Q Consensus 1654 -----~~~~ll~~Ll~~---L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l~~llp~l~~~l~---------------- 1706 (2622)
+++.++|.+++. +.++... .+ .+..+++.++..+|... ++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~-~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKD-LF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTT-HH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHH-HH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 566777777743 3333333 33 67888999999888753 3455554443321
Q ss_pred -CCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc---hhhhhHHHH
Q 000050 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2622)
Q Consensus 1707 -~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~---~i~~llp~l 1780 (2622)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++.++.|+..+||..+..+++.+...++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12567889999999999999999999998 789999999999999999999999999999877754 456789999
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCH
Q 000050 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSL 1858 (2622)
Q Consensus 1781 ~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~ 1858 (2622)
.+.+.+++..+|..++..+|.+...++.. + .++...+++.++..+. +...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~-----------------------~-----~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE-----------------------M-----QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG-----------------------G-----GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh-----------------------H-----HHHHHHHHHHHHHHhCCCCCCc
Confidence 99998888899999999999987654210 0 0123345555555443 3466
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhh--cCCC
Q 000050 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2622)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~--L~d~ 1935 (2622)
.+++.|+.+++.+....|..+.++++.+++..+..+.. .+.+.|..+.++++.++..-+....+.+..++... ..++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999998899999999999999974 56678999999999999987776666665443332 3345
Q ss_pred ChhhHHhHHHHH
Q 000050 1936 SASRRQGVCIGL 1947 (2622)
Q Consensus 1936 ~~~vR~~a~~~L 1947 (2622)
.++.+......|
T Consensus 808 ~~~l~~~~~~~l 819 (852)
T 4fdd_A 808 KDDLRDMFCKIL 819 (852)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555444433
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.5e-31 Score=388.87 Aligned_cols=751 Identities=12% Similarity=0.121 Sum_probs=562.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHHH-HHHHHHhccc--------------ccc-CC
Q 000050 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQTTF--------------VNT-VD 1570 (2622)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r~-al~~L~~~~~--------------~~~-~~ 1570 (2622)
.++++.+|..|.+.|..+.+. ....+.+.+...+.+. +..+|. |...+-. .+ ... +.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~-~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKN-ELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHT-TTCCSSHHHHHHHHHHHHHHSC
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh-hccCcChHHHHHHHHhHhhhCC
Confidence 567889999999999887542 1234555666666543 456673 3333322 11 111 45
Q ss_pred hhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Q 000050 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1571 ~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.....+.+.+...+.+.+..+|..++.+++.++.... + ...++.+++.+.+.+.++ ++.+|..+..+++.+.+.
T Consensus 90 ~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~ 165 (861)
T 2bpt_A 90 PEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL-P---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCES 165 (861)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-G---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-c---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 55566777888888989899999999999999887521 1 114678999999999988 999999999999999997
Q ss_pred hCCC------CchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHH
Q 000050 1650 MGEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYL 1717 (2622)
Q Consensus 1650 ~g~~------~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al 1717 (2622)
++++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ....+++.+.+.+.+.++.+|..++
T Consensus 166 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~ 245 (861)
T 2bpt_A 166 ADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAF 245 (861)
T ss_dssp SSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7654 45567777777776652 5668888888888765433321 1245677777778889999999999
Q ss_pred HHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh--------------------hchhhhh
Q 000050 1718 TLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLL 1776 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~--------------------~~~i~~l 1776 (2622)
.++..++...+..|.+|+. .+++.+...+.|.++.+|..++..+..++.... ...+..+
T Consensus 246 ~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 325 (861)
T 2bpt_A 246 GCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325 (861)
T ss_dssp HHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999988876531 1123446
Q ss_pred HHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH
Q 000050 1777 LPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2622)
Q Consensus 1777 lp~l~~~l~-------d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L 1849 (2622)
+|.+...+. |++|.+|..+.+.++.+... +|.+....+++.+
T Consensus 326 l~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l 374 (861)
T 2bpt_A 326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHH
Confidence 666655543 34577777777777766433 2222334455555
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----chhhh
Q 000050 1850 YMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPS 1923 (2622)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~-----~~l~~ 1923 (2622)
...+.+.++.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 556678899999999999999998764 778889999999999999999999999999999999998764 35788
Q ss_pred HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC---hhhHHHhHHhHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
++|.+...+.++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 999999999886 9999999999999988765 35677899999999999997 44588999999999999988775
Q ss_pred h---hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhh
Q 000050 1999 Q---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2622)
Q Consensus 1999 ~---~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~i 2075 (2622)
. .+..++|.+++.+.+... .. ..++..- ..-....+......+++.+....|..+.+|++.+
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~-------------~~-~~i~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 598 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMS-------------VD-ENQLTLE-DAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTT-------------SC-GGGCCHH-HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-------------hh-cccCChh-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3 234555655555432100 00 0000000 0000000112345677888888888899999999
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH
Q 000050 2076 LPALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2622)
Q Consensus 2076 l~~Ll~~l~~~~~-~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~ 2151 (2622)
++.++..+.+.+. .+|+.+..+++.++...+. .++..+++.+...++++++.+|..++.+++.+++..+..+.+|+
T Consensus 599 ~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 678 (861)
T 2bpt_A 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS 678 (861)
T ss_dssp HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH
Confidence 9999999977766 8999999999988877654 45788999999999888899999999999999998888899999
Q ss_pred HHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---hhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcC
Q 000050 2152 PNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226 (2622)
Q Consensus 2152 ~~il~~L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~ 2226 (2622)
+.+++.++..+++++ .++|..+..+++.++...+... ++.+++.+.+.+.... +. +
T Consensus 679 ~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~----~ 739 (861)
T 2bpt_A 679 DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---------------EN----G 739 (861)
T ss_dssp HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---------------SS----S
T ss_pred HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC---------------CC----C
Confidence 999999999998764 8899999999999988765533 2333333333221100 00 0
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHhhcCC--C-CHhhHHHHHHHHHHHHH
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~~~--~-~~~vk~~al~~L~~L~~ 2301 (2622)
..-.. .....+|..++.+++.++...+ +..+.+|+..++..+.+.+.+. . ++.+|.+++.+++.++.
T Consensus 740 -d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 740 -TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp -SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred -ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 00000 0013578899999999998876 3579999999999998888663 1 78899999999999999
Q ss_pred hc-CCCccCchH-HHHHHHHHHhCC---CCHHHHHHHHHHHHHHHh
Q 000050 2302 KG-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2302 ~~-~~~l~p~l~-~L~~~llk~L~d---~~~~vR~~Aa~aLg~L~~ 2342 (2622)
.. |..+.+|++ ++.+.+++.+.. .+..++..|.+|+|.+..
T Consensus 812 ~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 812 MFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99 889999999 999999998873 478899999999998753
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=5e-32 Score=390.66 Aligned_cols=707 Identities=15% Similarity=0.175 Sum_probs=538.5
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhc---cccccCChhhhhhHHHHHHhh
Q 000050 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT---TFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~---~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
..++++.+|+.|.+.|.++.. +|.+...+-.++..+.+.+..+|...-.+.+. .....+++.....+.+.+.++
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 346799999999999988743 46655555555555456667788432222221 222345666777888999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--------~~~ 1656 (2622)
+.+.++.+|..++.+++.++..- . ...++.+++.+.+.+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2356789999999999999999999999999999987643 256
Q ss_pred hhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
.++|.+++.+.+ .+..+|..++.+++.++...+.. .++.+++.+.+.++++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 678888777764 45668999999988776544433 24678888888889999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-----hhhchhhhhHHHHhhccC-----------C-----------
Q 000050 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2622)
Q Consensus 1734 ~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~-----~~~~~i~~llp~l~~~l~-----------d----------- 1786 (2622)
|++.+++.++..+.|.++.||..|++++..+.+. +-...+..++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999988876532 122344556777765552 2
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHH
Q 000050 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1787 ~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~ 1866 (2622)
.+|.+|..+...++.+.. .+|.+....+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la~-------------------------------~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLAN-------------------------------VYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHHH-------------------------------HHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH-------------------------------hccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456666666666666543 2333334455555555667889999999999
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc----chhhhHHHHHhhhcCCCChhhHHh
Q 000050 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2622)
Q Consensus 1867 ~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2622)
+++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.+....+. ...+.+++.+.+.+.|+++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987654 256788899999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHH
Q 000050 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 2022 (2622)
Q Consensus 1943 a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL 2022 (2622)
++.+++.++...+.. +.+|++.+++.+...+.+.+......+..+++.+....|....
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~--------------------- 519 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN--------------------- 519 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC---------------------
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 999999998877654 7889999999999888766555555555566655544332110
Q ss_pred HHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHH---hcCCCCHHHHHHHHHHHH
Q 000050 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS---AMGDDDMDVQSLAKEAAE 2099 (2622)
Q Consensus 2023 ~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~---~l~~~~~~vr~~a~~al~ 2099 (2622)
-.+|++.++|.+++ .+.+.+++++ .+.++++
T Consensus 520 ---------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~ 553 (852)
T 4fdd_A 520 ---------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLS 553 (852)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHH
Confidence 02244455555552 3344455554 4566666
Q ss_pred HhhhccCh---hcHHHHHHHHHhhc-----------------CCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHH
Q 000050 2100 TVTLVIDE---EGVESLVSELLKGV-----------------GDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST 2157 (2622)
Q Consensus 2100 ~l~~~~~~---~~l~~ll~~Ll~~l-----------------~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~ 2157 (2622)
.++..++. +++..+++.++..+ ..++...|..++.+++.+++..+..+.+|+ +.+++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 66665543 22333333222222 233677899999999999998888888887 789999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHH
Q 000050 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237 (2622)
Q Consensus 2158 L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~ 2237 (2622)
++..++|++..||..+..+++.++...+... .+++..++|.+.+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~ 678 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTN 678 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHT
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999986543221 13556688888888
Q ss_pred HccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000050 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2622)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~ 2316 (2622)
+..+..++|..|+.++|.++...+ ..+.||+..++++|++++++. .+..++..+..++|.++...+..+.||++++++
T Consensus 679 l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 679 LNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHH
Confidence 877788999999999999999998 579999999999999999764 245799999999999999988889999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHhcccC-hhhHHHHHHHhh
Q 000050 2317 TFIKCLQD-STRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL 2358 (2622)
Q Consensus 2317 ~llk~L~d-~~~~vR~~Aa~aLg~L~~~~~~-~~~ll~~Ll~~l 2358 (2622)
.+++.|.+ .+.+.|..|..+|..++..+|. +.+.+..++..+
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~ 801 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV 801 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999987 4677899999999999876654 344444444444
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.1e-32 Score=395.44 Aligned_cols=749 Identities=15% Similarity=0.154 Sum_probs=552.2
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHHH-HH---HHHHhc----------ccccc
Q 000050 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SL---DILLQT----------TFVNT 1568 (2622)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r~-al---~~L~~~----------~~~~~ 1568 (2622)
+..+.++++.+|..|...|..+... ....+.+.|+..+.++ +..+|. |. +..+.. .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887642 2345666666666553 456673 22 222210 01123
Q ss_pred CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000050 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2622)
Q Consensus 1569 ~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L 1646 (2622)
+.+.....+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455566677777888888877778 889999999887531 1245788999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHHhchhH----H-HhHhHHHHHhccCCChhhHHHH
Q 000050 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2622)
Q Consensus 1647 ~~~~g~----~~~~~ll~~Ll~~L~~~~-~~~~r~~a~~~L~~i~~~~g~~~----l-~~llp~l~~~l~~~~~~vR~~a 1716 (2622)
+..+++ .+.+.+++.+...+.+++ +..+|..++.+++.++..++... . ..+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987643 356778888888887663 46688889999988776544321 1 2467777777788899999999
Q ss_pred HHHHHHhhhhhCcchhhhHH-hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh------------------------c
Q 000050 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2622)
Q Consensus 1717 l~~l~~L~~~~g~~f~p~l~-~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~------------------------~ 1771 (2622)
+.++..++...+..|.||+. .+++.++..+.+.++.+|..++..+..+.+.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999988877654210 0
Q ss_pred hhhhhHHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHH
Q 000050 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2622)
Q Consensus 1772 ~i~~llp~l~~~l~-------d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~ 1844 (2622)
.+..++|.+.+.+. |++|++|.++..+++.+.... |.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~-------------------------------~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------------------------------EDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------------------------------GGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC-------------------------------cHhhHHH
Confidence 12345555544432 456777777777777664332 2223345
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000050 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2622)
Q Consensus 1845 il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~----- 1918 (2622)
+++.+...+.|.++.+|.+|+.+++.++.+.+ ..+.++++.+++.++..+.++++.+|..|+.+++.+++..+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 56656566788999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred chhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-------------hhhHHHhHHhHHHHHHHHhcCC---cHHHH
Q 000050 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2622)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---d~~VR 1982 (2622)
..++.+++.+...+.++ +.+|..++.+++.++...+ .+.+.+|++.+++.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35778889888888885 8999999999999987654 1346789999999999998765 45789
Q ss_pred HHHHHHHHHHHHHhChhh---hhhhHHHHHHhcccC---------CchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1983 ESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1983 ~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
..+.++++.+....|... ...++|.+++.+... +...... +. +.
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~-------------------~~-----~~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQF-------------------ND-----LQ 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHH-------------------HH-----HH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHH-------------------HH-----HH
Confidence 999999999998877532 234455555444320 0000000 00 01
Q ss_pred hHHHHHHHHHHHHhC-CChhhhHhhhHHHHHHhcCCCC--HHHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcCCC
Q 000050 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g-~~l~~~l~~il~~Ll~~l~~~~--~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~d~ 2124 (2622)
.....+++.+....| ..+.+|++.++|.++..+.+.. +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456777777778 8899999999999999997664 47899999999998876543 45788999999988876
Q ss_pred -ChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc---hhhHHHHHHH
Q 000050 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRD 2198 (2622)
Q Consensus 2125 -~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~ 2198 (2622)
++.+|..++.+++.++...+..+.++.+.+++.++..+.+ .+.+++..+..+++.++...+.+. ++.+++.+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 8999999999999999888888999999999999999986 467899999999999987655432 3333333322
Q ss_pred HHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh---------hhhhhhh
Q 000050 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFV 2269 (2622)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~---------~~l~p~v 2269 (2622)
.+.... + +.. .-...+ ...+|..+..+++.++...+. ..+.||+
T Consensus 742 ~~~~~~---------------~---~~d--~~~~~~-------~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 742 ASQAQV---------------D---KSD--YDMVDY-------LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHTCCC---------------C---TTC--HHHHHH-------HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHhccC---------------C---CCC--hHHHHH-------HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 221000 0 000 000000 126788888889888877653 4688999
Q ss_pred hhhhHHHHHhhcCCC-CHhhHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhccc
Q 000050 2270 IPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALST 2345 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-l~~L~~~llk-~L~d~~~~vR~~Aa~aLg~L~~~~~ 2345 (2622)
..+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.+
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhc
Confidence 999877766666543 678999999999999999988 78888 5678888888 9999999999999999999976543
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.2e-31 Score=390.51 Aligned_cols=734 Identities=16% Similarity=0.187 Sum_probs=559.8
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000050 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2622)
Q Consensus 1584 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~----------- 1650 (2622)
.+.+.+.++|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|...+...
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34566789999999999876541 134456666666655 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch-hHHHhHhHHHHHhccCC--ChhhHHHHHHHHHHh
Q 000050 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2622)
Q Consensus 1651 ----g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-~~l~~llp~l~~~l~~~--~~~vR~~al~~l~~L 1723 (2622)
.++....+.+.+++.+.++.+. . ..++++++.++...+. ..+++++|.+.+.+.++ ++.+|.+++.+++.+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112234455577777765544 4 7788899998887654 67889999999999888 899999999999999
Q ss_pred hhhh-CcchhhhHHhHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhch-----hhhhHHHHhhccCCCchHHHHHH
Q 000050 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSS 1795 (2622)
Q Consensus 1724 ~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~lv~~~~~~~-----i~~llp~l~~~l~d~~~rvR~~a 1795 (2622)
+..+ +..|.+|++.+++.+...+.++ +..+|..+++++..++..++... .+.+++.+.+.+.+.++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4567889999999999999987 68899999999988765433221 12467777777888899999999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC
Q 000050 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2622)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2622)
++.++.++...+.. +...+. ..+++.+.....|.+..||..|++.|..++...
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~~~~----~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~ 290 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------METYMG----PALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHHHHT----TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHHHHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999987543210 111111 134555555567888999999999999998642
Q ss_pred h---------------------hhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhccchhhhHHHH
Q 000050 1876 P---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2622)
Q Consensus 1876 p---------------------~~l~~~l~~ll~~L~~~L~-------s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1927 (2622)
. ...+++++.+++.++..+. +.++..|..|..+++.++...|+.+.+.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~ 370 (876)
T 1qgr_A 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (876)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHH
Confidence 1 1233456778888888775 34678999999999999999998888999999
Q ss_pred HhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhhh
Q 000050 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2622)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-----~~~~ 2002 (2622)
+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..++
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 99999999999999999999998776665667789999999999999999999999999999999887654 3456
Q ss_pred hhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhC--------------CCh
Q 000050 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PGL 2068 (2622)
Q Consensus 2003 ~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g--------------~~l 2068 (2622)
.++|.++..|.++ .. +....+.+++.+...++ ..+
T Consensus 451 ~~l~~l~~~l~~~-~~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l 499 (876)
T 1qgr_A 451 PLLQCLIEGLSAE-PR------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499 (876)
T ss_dssp HHHHHHHHHTTSC-HH------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred HHHHHHHHHHcCC-HH------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence 6777777777553 10 01123345555555443 458
Q ss_pred hhhHhhhHHHHHHhcCCC---CHHHHHHHHHHHHHhhhccCh---hcHHHHHHHHHhhcC-----------CCC----hh
Q 000050 2069 NFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----AS 2127 (2622)
Q Consensus 2069 ~~~l~~il~~Ll~~l~~~---~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~-----------d~~----~~ 2127 (2622)
.||++.++|.|+..+.+. +..+|..+.++++.++...+. ..+..+++.++..+. +++ +.
T Consensus 500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~ 579 (876)
T 1qgr_A 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579 (876)
T ss_dssp TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 899999999999998654 467899999999999987764 335667776665543 222 45
Q ss_pred HHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhch
Q 000050 2128 IRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 2204 (2622)
Q Consensus 2128 vR~~A~~~L~~l~~~~~-~~l~~~~~~il~~L~~~l~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~ 2204 (2622)
+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~---------------- 643 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF---------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG----------------
T ss_pred HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH----------------
Confidence 78899999999999888 8899999999999999998764 4788888888888765432111
Q ss_pred hhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC
Q 000050 2205 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 2283 (2622)
Q Consensus 2205 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2622)
..++..++|.+...+.+. ++++|..++.+++.++...+ ..+.||+..+++.++..+.+.
T Consensus 644 -------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 644 -------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp -------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCT
T ss_pred -------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCc
Confidence 134456778888888876 78999999999999999888 689999999999999999762
Q ss_pred -CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhc-c------
Q 000050 2284 -FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S------ 2344 (2622)
Q Consensus 2284 -~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~-----------~~vR~~Aa~aLg~L~~~-~------ 2344 (2622)
.+.++|..++.+++.++...|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. +
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3578999999999999999999999999999999999887642 28999999999877432 1
Q ss_pred ----cChhhHHHHHHHhh----hcC--CHhHHHHHHHHHHHHHhhcCC-CCChHH-HHHHHHHHHH-hhcCCCHHHHHHH
Q 000050 2345 ----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVSA 2411 (2622)
Q Consensus 2345 ----~~~~~ll~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~a 2411 (2622)
..+.++++.++..+ .++ +..+|..++.+|..++...|. .+ .++ .+.++..+.. .+.++++.+|.+|
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~a 862 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTLA 862 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHHH
Confidence 24566777766554 444 678999999999999998877 44 334 4455555555 8889999999999
Q ss_pred HHHHHHHHhhcC
Q 000050 2412 ASILGIMSQCME 2423 (2622)
Q Consensus 2412 a~~Lg~L~~~~~ 2423 (2622)
+.++|.+++..+
T Consensus 863 ~~a~~~~~~~~~ 874 (876)
T 1qgr_A 863 RWATKELRKLKN 874 (876)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999986543
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.2e-31 Score=371.83 Aligned_cols=566 Identities=18% Similarity=0.215 Sum_probs=450.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1337 ~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
..+..+++.+.+ +++..|..|+..++.++..+|+.... ..+++.+.+.+ ++ ++.+|..+..+++.+....+. ..
T Consensus 10 ~~i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~ 83 (588)
T 1b3u_A 10 YPIAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PE 83 (588)
T ss_dssp HHHHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GG
T ss_pred CcHHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HH
Confidence 346677777654 45789999999999988877765442 36888888776 44 688999888888776655442 24
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.+...+++|..|..++.+++.++...+..
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 5667888888888999999999999999999998887765 455666656666778899999999999988766543
Q ss_pred hhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhh
Q 000050 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2622)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~ 1575 (2622)
..+.++|.+..+++|+++.||.+|+.+|+.+++.++.+.. ..
T Consensus 161 ~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~ 202 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KS 202 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HH
Confidence 3567889999999999999999999999999987653211 12
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-C
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-N 1654 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~-~ 1654 (2622)
.++|.+...++|.++.+|..|..+++.++...+. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~ 278 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccc
Confidence 3455555556666777888888888887775432 1245567888888888888999999999999988877755 3
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-----HHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-----~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 1729 (2622)
.+.++|.+...+.++ ...+|..++.+++.++..+|.+ .++.++|.+...++++++.+|..++.+++.++..+|.
T Consensus 279 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 357 (588)
T 1b3u_A 279 KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH
T ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 456778777777644 4568888888888888887754 4678889898889999999999999999999999987
Q ss_pred chhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcC
Q 000050 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2622)
Q Consensus 1730 ~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~ 1808 (2622)
.. +.+.++|.+...+.|++++||..+..++..+...++.. ..+.++|.+.+.+.|.+|++|..+++.++.+...++
T Consensus 358 ~~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~- 434 (588)
T 1b3u_A 358 DN--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG- 434 (588)
T ss_dssp HH--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-
T ss_pred hH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC-
Confidence 43 45678899999999999999999999999998877654 346789999999999999999999999998764432
Q ss_pred CcccccccCCCCCCcccHHHHHHHHHHHhChhh-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 000050 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2622)
Q Consensus 1809 ~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~-~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll 1887 (2622)
.+. .+.+++.+...+.|.+..||..|+.+++.++...+.. .+++.++
T Consensus 435 ------------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~ll 482 (588)
T 1b3u_A 435 ------------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATII 482 (588)
T ss_dssp ------------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTH
T ss_pred ------------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHH
Confidence 111 1245566666788999999999999999999876543 3467788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhH
Q 000050 1888 NTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2622)
Q Consensus 1888 ~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~l 1966 (2622)
|.+...+.++++.+|..++.+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.+
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~ 559 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEV 559 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHH
Confidence 88888888999999999999999999988765 5788999999999999999999999999999877765432 2577
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000050 1967 IPTIRTALCDSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1967 l~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2622)
+|.+...+.|.|++||..|+.+++.+
T Consensus 560 ~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 560 KPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 88888888999999999999998865
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.98 E-value=3.4e-29 Score=347.23 Aligned_cols=566 Identities=18% Similarity=0.220 Sum_probs=447.6
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p 1579 (2622)
+..++..+.++++.+|..|.++++.++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456777889999999999999999887654321 1222 444
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000050 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2622)
Q Consensus 1580 ~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~-~~l 1658 (2622)
.+.... +.++++|..+...++.++..++. ..|...+++.+...+.|+++.||..|..+++.++...+++.+ +.+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444444 45678888888888877765543 236677888888888899999999999999999987765432 345
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~i 1738 (2622)
+|.+.... .++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~-~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLA-GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHH-TCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHh-cCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 55554443 344566788888888888887777667888898889899999999999999999999988863 466789
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000050 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2622)
Q Consensus 1739 i~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~-~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2622)
+|.+...+.|+++.||..|..++..+....+.+ ..+.++|.+...+.|++|++|..+++.++.+....+
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---------- 274 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---------- 274 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----------
Confidence 999999999999999999999999988877654 345688888888999999999999999998864321
Q ss_pred CCCCCcccHHHHHHHHHHHhChh-hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHHHHh
Q 000050 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2622)
Q Consensus 1818 ~~dde~~~~~~~~~~l~~~Lg~e-~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~--~~l~~ll~~L~~~L 1894 (2622)
.+ ..+.+++.+...+.|.++.||..|...++.++...+.... .+++.+++.+...+
T Consensus 275 ---------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 275 ---------------------PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp ---------------------HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred ---------------------cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 11 1223555566667899999999999999999987765432 57888889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHH
Q 000050 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2622)
Q Consensus 1895 ~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2622)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.++...+.+. +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988876 467899999999999999999999999999887766543 346788888888
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchH
Q 000050 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2622)
Q Consensus 1974 L~d~d~~VR~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~ 2052 (2622)
+.|++..+|..++.+++.+....|...+ +.++|.++..|.++... +...
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999988887543 45678777777665421 1112
Q ss_pred HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-hcHHHHHHHHHhhcCCCChhHHHH
Q 000050 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2622)
Q Consensus 2053 ~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~d~~~~vR~~ 2131 (2622)
+..+++.+....|.. .+++.++|.+...+.+++..+|..+..+++.+...++. .....+++.+...++|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 345566666666653 34688999999888889999999999999999887654 346789999999999999999999
Q ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000050 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2622)
Q Consensus 2132 A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~ 2181 (2622)
++.+++.++...+.++. .+.+++.+..+++|+|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999987654432 2567777777889999999999999998763
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=7.9e-22 Score=269.65 Aligned_cols=310 Identities=26% Similarity=0.476 Sum_probs=280.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~--~~~~ 1415 (2622)
.++.+++.+..++ ...++.++..++.++.+-+........+++.+.+.+.+++++ ++|+.++..+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 4445666665544 567899999999998865433332347899999999988655 999999999997665 4689
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
||+..++|.++..++|....||++|..++..++..++++.++.++|.+++.|.+. .|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999754 799999999999999999999999
Q ss_pred hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
.++|+++|.+.+++.|.+++|+.+|..++..++..+.|+++.+++|.|++++.+| +.+.+|++.|..|+|+..+++|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchhH
Confidence 9999999999999999999999999999999999999999999999999999999 458899999999999999999999
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
+.++|.|.++|.+++..++++++.+++|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998763 5899999999999999887554
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=7.4e-18 Score=244.91 Aligned_cols=645 Identities=12% Similarity=0.115 Sum_probs=400.7
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcC--C
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~--~ 1126 (2622)
+++.++|.+++|||+.+| |+++|++.. +.|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 478899999999999999 999998763 11333333333322 2334566777763 4675321 1
Q ss_pred CCCCC----h-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000050 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2622)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2622)
.++++ + ..+++.+.+++..+|+.++++++.++. .||+.|++++..+.+.. .. .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23332 3 667888877779999999999999975 57888888888887542 11 123578899999
Q ss_pred HHHhhhhhCC--C--Ch-hH-----------HHHHHH--hhhcCCCCH---HHH--HHHHHHHHHHHHHh-----c---c
Q 000050 1201 LHSAADVLRT--K--DL-PV-----------IMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH-----G---R 1249 (2622)
Q Consensus 1201 l~~~~~~~~~--~--~~-~~-----------i~~~li--~~~l~d~~~---~VR--~~a~~a~~~~i~~~-----g---~ 1249 (2622)
+.++++.+.. . +. .. +++.+. ..++.+... .+| ..++.++..++... . .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 1 11 11 112111 123444322 244 12222222222211 1 1
Q ss_pred chhhhhHHHHHHHhcCCCC----C--h---hhhhhhhhHHHHHHHHHhh-hhccCCcchHHHHHHHHHHcC-----CCCH
Q 000050 1250 DNVSLLFPIFENYLNKKAS----D--E---EKYDLVREGVVIFTGALAK-HLAKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2622)
Q Consensus 1250 ~~~~~llp~~~~~l~~~~~----~--~---~~~~~vr~~~~~~~~~la~-~l~~~~~~v~~i~~~L~~~l~-----~~~~ 1314 (2622)
++....++.|.+++....+ + + ...+.+|..++..+..+.. |.+.-.+.++.+++.+...+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 2345567777777754211 0 0 0113456666666665553 221123456666666666553 3356
Q ss_pred HHHHHHHhhhHhhHhhhc--cch--HHHHHHHH-----HHHh----------------------cCCChHHHHHHHHHHH
Q 000050 1315 AVQRAVSSCLSPLMQSMQ--DEA--PTLVSRLL-----DQLM----------------------KSDKYGERRGAAFGLA 1363 (2622)
Q Consensus 1315 ~Vq~~a~~~L~~lv~~~~--~~~--~~~i~~Ll-----~~L~----------------------~~~~~~~r~~Aa~~L~ 1363 (2622)
.++..+.+.+..++.... ... ...++.++ ..+. .++.+..|+.|...|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 777777766665542211 111 12333333 2221 1223467899999999
Q ss_pred HHHhhhCccchhhhcHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHh-----c-c------cchhHHHHHHHHHH
Q 000050 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2622)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~l~~-----~~~~~~R~~al~al~~La~~~-----~-~------~~~~~v~~ilp~ll 1426 (2622)
.++...|...+. .+++++.+.+.. ..+|+.|++|+++++.++++. | . .+.+++. ..++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~---~~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT---KEIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH---HHTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH---HHhH
Confidence 999988844443 577887777761 337999999999999998752 1 1 2333322 3344
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh-----------Cchh
Q 000050 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2622)
Q Consensus 1427 ~~l~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~-----------~p~~ 1492 (2622)
..+.|+ ++.||.+|+.+++.+.+.+++.....++|.++..|.+++.+++..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 455666 89999999999999999888777899999999999988899999999999998873 2456
Q ss_pred hhhhhhhhHHHHhhhhcCCC---HH--HHHHHHHHHHHHhhhcCC---hhHHhHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 000050 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2622)
Q Consensus 1493 l~~~L~~ivp~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2622)
+.++++.+++.++.+++... +. ....+..+|+.++...++ |++..+++.|...+
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l------------------ 603 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV------------------ 603 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH------------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------
Confidence 88999999999999987641 12 446778888888776653 33333443333322
Q ss_pred ccccCChhhhhhHHHHHHhhhc-CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1565 ~~~~~~~~~l~~i~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
....+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...+
T Consensus 604 -----------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 604 -----------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp -----------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred -----------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 11111 23456667788889888876 344667888999999999999877778888899999
Q ss_pred HHHHhhhC--CCCchhhHHHHH--HHhhhcCChHHHHHHHHHHHHHHHHhchhHH--HhHhHHHHHhccCCChhhHHHHH
Q 000050 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2622)
Q Consensus 1644 ~~L~~~~g--~~~~~~ll~~Ll--~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l--~~llp~l~~~l~~~~~~vR~~al 1717 (2622)
+.+..... .+++..++|.+. ..+.... ........+...+...+.... +.++..+.+.+.+.. .++.++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 99887652 125667777776 5444332 112333334444433322211 222222222233333 358899
Q ss_pred HHHHHhhhhhCcc-hhhhHHhHHHHHHhhcCCC-ChHHHHHHHHHHHHHH
Q 000050 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1765 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~-f~p~l~~ii~~ll~~L~d~-~~~VR~~al~al~~lv 1765 (2622)
.+++.++..+|.. |.||++.+++.++..+... .+..+...+..+..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999999999988 9999999999999998765 3555544444444443
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.84 E-value=1.1e-16 Score=234.24 Aligned_cols=726 Identities=14% Similarity=0.157 Sum_probs=437.7
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCC
Q 000050 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2622)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2622)
.+++.++|++ ..++|+..|++|++.|++.... |....+...+. ..+.+..+|-+|. ..|.....
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 3567788888 4579999999999999875311 22222332322 2355666676654 35765432
Q ss_pred CCCCCh-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHH
Q 000050 1127 DFGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201 (2622)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al 1201 (2622)
+-.+.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++++..+.+...... +. ..+...+..+...|
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~----~~-~~~~~~~~~~l~iL 170 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAED----SP-VDGQGRCLALLELL 170 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhc----cC-CCcHHHHHHHHHHH
Confidence 222224 566766654 368999999999999875 688888888888876541100 00 00223566677777
Q ss_pred HHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHH
Q 000050 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 1281 (2622)
Q Consensus 1202 ~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~ 1281 (2622)
..+++.+.+... ...-|... +..=....+.+++.+..++..... .+.++..+.
T Consensus 171 ~~l~ee~~~~~~---------------~~~~r~~~--------~~~l~~~~~~i~~ll~~~l~~~~~----~~~~~~~~l 223 (963)
T 2x19_B 171 TVLPEEFQTSRL---------------PQYRKGLV--------RTSLAVECGAVFPLLEQLLQQPSS----PSCVRQKVL 223 (963)
T ss_dssp HHHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTC----CHHHHHHHH
T ss_pred HhCHHHHhcccC---------------cHHHHHHH--------HHHHHHHHHHHHHHHHHHHhCCCC----chHHHHHHH
Confidence 776653221110 00001000 000012345667777777754221 112444444
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhc-cchHHHHHHHHHHHh----------cCC
Q 000050 1282 IFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSD 1350 (2622)
Q Consensus 1282 ~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~-~~~~~~i~~Ll~~L~----------~~~ 1350 (2622)
.++..... +.........+++.++..+. +++++..+.+|+..++.... ......+..++..+. ..+
T Consensus 224 ~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (963)
T 2x19_B 224 KCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG 300 (963)
T ss_dssp HHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 44432222 11111112567777777774 45788889999988875421 112223333322221 122
Q ss_pred ChHHHHHHHHHHHHHHhhhC---------ccchhhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh-------
Q 000050 1351 KYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL------- 1410 (2622)
Q Consensus 1351 ~~~~r~~Aa~~L~~l~~~lg---------~~~l~~~~i~~~L~~~l~~----~~~~~~R~~al~al~~La~~~------- 1410 (2622)
|.......+..+..+..... ...+ ..+++.+.++..+ ..+..+...++..+..+++..
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 378 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK 378 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 33344444455554443211 1111 1455666666554 124455666666666666522
Q ss_pred ----cccchhHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhc----
Q 000050 1411 ----GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL---- 1467 (2622)
Q Consensus 1411 ----~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L---- 1467 (2622)
...+.+++.++++.++..+..++. ..|.++.+++..+....+...+..+++.+.+.+
T Consensus 379 ~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~ 458 (963)
T 2x19_B 379 QAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE 458 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
Confidence 234568888888888887753221 236677788888877777666666666666666
Q ss_pred cCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcC
Q 000050 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2622)
Q Consensus 1468 ~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~ 1547 (2622)
.+.+|+.+.+++.+++.++++........++.+++.+..+ .++++.||..++++++++++.+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~-------------- 523 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH-------------- 523 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC--------------
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 6789999999999999999987765556677888855544 4468999999999999998765310
Q ss_pred CCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHH
Q 000050 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2622)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2622)
...+..+++.+..++.+ +.++..|+.++.++++... +.+.||++.++..+...
T Consensus 524 -----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 524 -----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDV 576 (963)
T ss_dssp -----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHH
Confidence 01223344555555544 5788889999999997543 56899999999999998
Q ss_pred hcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhh----cCChHHHH---HHHHHHHHHHHHhch---
Q 000050 1628 LVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKS----DNSNVERS---GAAQGLSEVLAALGT--- 1691 (2622)
Q Consensus 1628 L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~----~~~~~~r~---~a~~~L~~i~~~~g~--- 1691 (2622)
+.. .....|..+.+++|.++...+++ ++..+++.+...+.. ..+...+. ....+++.++..++.
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 885 36789999999999999877622 455666655554432 21222222 455667788877652
Q ss_pred ------------------h----HHHhHhHHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1692 ------------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1692 ------------------~----~l~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
+ ..+.++|.+.+.+.. .+..+.+.++.++..++..+|+.|.||++.+++.++....
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS 736 (963)
T ss_dssp C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH
Confidence 1 235556665554432 4678999999999999999999999999999998877654
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhc----c---CCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000050 1748 DENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG----I---FNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~-----~i~~llp~l~~~----l---~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2622)
.... ...+..+..++..++.. .+..++..+... + .+++..+|.+...+++.++..++...
T Consensus 737 ~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----- 808 (963)
T 2x19_B 737 TIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----- 808 (963)
T ss_dssp HSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-----
T ss_pred cCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-----
Confidence 3211 12445556666644332 222222222221 1 22346688999999999887654221
Q ss_pred cCCCCCCcccHHHHHHHHHHHhChhh-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh--hh----HHHHHHHHHH
Q 000050 1816 EGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMN 1888 (2622)
Q Consensus 1816 ~~~~dde~~~~~~~~~~l~~~Lg~e~-~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p--~~----l~~~l~~ll~ 1888 (2622)
+.... +..++..+..++...+..+..+++..|..++...+ .. +.++.+.++.
T Consensus 809 ---------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 809 ---------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp ---------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred ---------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 00111 34455555556677888999999999999987543 22 2345666666
Q ss_pred HHHHHhcC
Q 000050 1889 TLISSLAS 1896 (2622)
Q Consensus 1889 ~L~~~L~s 1896 (2622)
.++..+.+
T Consensus 868 ~l~~~l~~ 875 (963)
T 2x19_B 868 AVLEAIGG 875 (963)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 66666654
No 14
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.83 E-value=2.3e-17 Score=241.22 Aligned_cols=717 Identities=13% Similarity=0.123 Sum_probs=414.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCCCC
Q 000050 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2622)
+++.++|+.+.+||+..|++|++.|++.... |....+...+. ..+.+..+|-+|. ..|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQLM--QLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHHT--CTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 4577788889999999999999999886411 22222333322 3355666676654 3465533222
Q ss_pred CCCh-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000050 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2622)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2622)
.+.+ ..+++.+.+ ....+|++.+.+++.++. .|| .|++.+..+.+....... +.. ++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---ccC-CCHHHHHHHHHHHHH
Confidence 2224 566666543 368999999999999875 577 788877777765432100 000 112356677777776
Q ss_pred hhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCC--ChhhhhhhhhHHH
Q 000050 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2622)
Q Consensus 1204 ~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~--~~~~~~~vr~~~~ 1281 (2622)
+++.+... . -.++...++..+ . ...+.+++++.+++..... .......++..+.
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~l--------~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAEI--------A----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHHH--------H----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHHH--------H----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 66421100 0 001111111111 1 2345556666666643211 1111224566666
Q ss_pred HHHHHHhh--hhccCCcchHHHHHHHHHHc----------------CCCCHHHHHHHHhhhHhhHhhhc-cc----hHHH
Q 000050 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2622)
Q Consensus 1282 ~~~~~la~--~l~~~~~~v~~i~~~L~~~l----------------~~~~~~Vq~~a~~~L~~lv~~~~-~~----~~~~ 1338 (2622)
.+++.... .++.. ....+++.+.. + .+++++++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66655444 23222 34556666665 4 12457899999999998886422 11 1223
Q ss_pred HHHHHHHH---h---cCCCh---HHHHHHHHHHHHHHhhhCc--------------cchhhhcHHHHHHHHHhC----CC
Q 000050 1339 VSRLLDQL---M---KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2622)
Q Consensus 1339 i~~Ll~~L---~---~~~~~---~~r~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~l~~----~~ 1391 (2622)
++.++... . ..+|. ......+..+..+...... ..+ ..+++.+.++... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 33333211 1 12232 3444455555554422110 111 1455555555533 22
Q ss_pred CHHHHHHHHHHHHHHHHHh------------cccchhHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHH
Q 000050 1392 SAKRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAA 1444 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~------------~~~~~~~v~~ilp~ll~~l~D~~---------------~~VR~aa~~al 1444 (2622)
+..++..++..+..+++.. ...+.+++.++++.++..+.-++ ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 5667777887777776622 12346788888888888773111 14678888888
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhccC-----CChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh-cCCCHHHHHH
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2622)
..++..++...+..+++.+-+.+.+ .+|+.+.+++.+++.+++++.......++.+++.+..+. .|.++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877756666667666666654 789999999999999999877766677888888444443 2679999999
Q ss_pred HHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
++++++++++.+... + ..+..++|.+..++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999876421 0 11223445555555 2 467888999
Q ss_pred HHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhh----h
Q 000050 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2622)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~----~ 1668 (2622)
++.++++..+ ..+.||++.++..+.+.+.. .....+..+.++++.++...+++ ++..+++.++..+. .
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 46889999999999999987 45789999999999999877633 45555555555443 2
Q ss_pred cC-ChHHHH---HHHHHHHHHHHHhchh----------------HHHhHhHHHHHhccC--CChhhHHHHHHHHHHhhhh
Q 000050 1669 DN-SNVERS---GAAQGLSEVLAALGTV----------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2622)
Q Consensus 1669 ~~-~~~~r~---~a~~~L~~i~~~~g~~----------------~l~~llp~l~~~l~~--~~~~vR~~al~~l~~L~~~ 1726 (2622)
.. +...+. .....++.++..++.. ..+.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 222233 3334455555555421 235567766665543 3668999999999999999
Q ss_pred hCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000050 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2622)
Q Consensus 1727 ~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~ 1806 (2622)
+|..|.||++.+++.++..+..... ..++..+..++..++.+. .++....+++..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHH---
Confidence 9999999999999999988875332 224444445444443310 00000000111110
Q ss_pred cCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHhhChhhHH--H
Q 000050 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2622)
Q Consensus 1807 ~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~p~~l~--~ 1881 (2622)
..++..+..+ ..+..+++++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0011111000 0122567999999999999999887765 6
Q ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000050 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2622)
Q Consensus 1882 ~-l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~ 1915 (2622)
. ++.+++..+..+..++......+..++..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888766666667778888877665
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.83 E-value=4.3e-16 Score=226.40 Aligned_cols=709 Identities=10% Similarity=0.101 Sum_probs=423.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-hC--
Q 000050 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2622)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~~-- 1209 (2622)
..++....++|..+| |.+.+..+ +..|+.+..++..+.+. ..+-++|..++..|+..... +.
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~------------~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST------------NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT------------TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 345555567788888 66666544 67787776665555311 12347899999999887642 22
Q ss_pred -------CCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCCChhhhhhhhhHHHH
Q 000050 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2622)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~~~~~~~~vr~~~~~ 1282 (2622)
+++...+.+.++ .++.+....||..+..++..+++....+.|++++|.+.+.+...+ ...++++..
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122233445554 444444589999999999888887666889999999998886532 234677777
Q ss_pred HHHHHhhhhcc--CC----cc----hHHHHHHH-------HHHcCCCCH---HHH------HHHHhhhHhhHhhh-c---
Q 000050 1283 FTGALAKHLAK--DD----PK----VHAVVDKL-------LDVLNTPSE---AVQ------RAVSSCLSPLMQSM-Q--- 1332 (2622)
Q Consensus 1283 ~~~~la~~l~~--~~----~~----v~~i~~~L-------~~~l~~~~~---~Vq------~~a~~~L~~lv~~~-~--- 1332 (2622)
.+..+.+.... .. +. +...++.+ ...+.++.. .++ ..+.+++..+.... .
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 77777765421 11 11 12222222 223554422 232 33444444332110 1
Q ss_pred -cchHHHHHHHHHHHhcC--------C--C----hHHHHHHHHHHHHHHhhhCccchhh--hcHHHHHHHHHhC----CC
Q 000050 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD----RN 1391 (2622)
Q Consensus 1333 -~~~~~~i~~Ll~~L~~~--------~--~----~~~r~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~l~~----~~ 1391 (2622)
+....+++.++..+... + + +..|+.+..++..++...+.. +.. ..+++.+.+.+.+ ..
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~-f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDV-FGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcC
Confidence 12234444444444221 0 0 345777888888877654421 111 1344444444431 22
Q ss_pred CHHHHHHHHHHHHHHHHHh--cccch--hHHHHHH-HHHHHHcC----C-------------------CCHHHHHHHHHH
Q 000050 1392 SAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS----D-------------------QVVAVREAAECA 1443 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~--~~~~~--~~v~~il-p~ll~~l~----D-------------------~~~~VR~aa~~a 1443 (2622)
+...+..++..+..+++.- ...|. +++.+++ +.++..+. | ....+|.+|..+
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4566667777666665422 23454 7888888 67776552 1 112578899999
Q ss_pred HHHHHHhhcHHhHHhhHHHHHhhcc------CCChhhHHHHHHHHHHHHhhC--ch-hhhh-----hhhhh-HHHHhhhh
Q 000050 1444 ARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVL 1508 (2622)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~la~~~--p~-~l~~-----~L~~i-vp~L~~~L 1508 (2622)
+..++...++..+..+++.+.+.+. +.+|+.|.+|+.++++++... +. .... .+..+ ...+...+
T Consensus 385 L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 385 LKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 9999988876666777777766665 678999999999999998632 11 1111 12222 23345556
Q ss_pred cCC---CHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhh
Q 000050 1509 TDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2622)
Q Consensus 1509 ~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l 1585 (2622)
.|+ ++.||..|+++++++++.+....+.. +++.+.+++
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L 505 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFL 505 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHh
Confidence 777 99999999999999998653222233 445555556
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcC---------CCCcccchHhhhHHHHHHHhcCCC---H--HHHHHHHHHHHHHHhhhC
Q 000050 1586 RERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMG 1651 (2622)
Q Consensus 1586 ~d~~~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~--~vR~~a~~aL~~L~~~~g 1651 (2622)
.+.+..+|..|+.++.+++.... ....+.||++.+++.+..++.... + .....+..+++.++...+
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 66667889999999999887432 124588999999999999988741 1 144688999999999888
Q ss_pred CC---CchhhHHHHHHHhhh----cCChHHHHHHHHHHHHHHHHhchh----HHHhHhHHHHHhccCCChhhHHHHHHHH
Q 000050 1652 EE---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2622)
Q Consensus 1652 ~~---~~~~ll~~Ll~~L~~----~~~~~~r~~a~~~L~~i~~~~g~~----~l~~llp~l~~~l~~~~~~vR~~al~~l 1720 (2622)
++ +++.+++.+...+.. .+....+.....+++.++...+.+ ..+.++|.+...+........+.++..+
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 76 455666666665543 233345556788888888875544 2356777777777666667888888888
Q ss_pred HHhhhhhCcchhhhHHhHHHHHH--hhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000050 1721 KYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2622)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~ii~~ll--~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~l 1798 (2622)
..+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...++. ++ . +.
T Consensus 666 ~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~~-------- 720 (960)
T 1wa5_C 666 AFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--LV-------- 720 (960)
T ss_dssp HHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--SH--------
T ss_pred HHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--HH--------
Confidence 8888766 778888888998888 6665432 22 12233333322221110 00 0 00
Q ss_pred HHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
.++..+.....+.. ....|..+++.++.+.|..
T Consensus 721 ---------------------------------------------~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~ 753 (960)
T 1wa5_C 721 ---------------------------------------------PVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMN 753 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHH
T ss_pred ---------------------------------------------HHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHH
Confidence 00000001111221 2367888999999988877
Q ss_pred -HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccch-h--------hhHHH----HHhhhcCC-CChhhHHh
Q 000050 1879 -LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQG 1942 (2622)
Q Consensus 1879 -l~~~l~~ll~~L~~~L~s~-~~~~R~~A~~~L~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~ 1942 (2622)
+.+|++.+++.++..+... ....+......++.++-..++.. . ..+.. .+...+.. .+...|.-
T Consensus 754 ~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~ 833 (960)
T 1wa5_C 754 RLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKI 833 (960)
T ss_dssp HHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHH
Confidence 9999999999999998755 45555455555555544444321 1 11122 22222222 34566777
Q ss_pred HHHHHHHHHHhhC--hhhHHHhHHhHHHHHHHHhc
Q 000050 1943 VCIGLSEVMASAG--KSQLLSFMDELIPTIRTALC 1975 (2622)
Q Consensus 1943 a~~~L~~li~~~~--~~~l~~~l~~ll~~l~~~L~ 1975 (2622)
++.++..++.... +....+.+..++..+...+.
T Consensus 834 ~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 834 ALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 8888888776430 22233445555555555443
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=2.7e-17 Score=220.20 Aligned_cols=391 Identities=16% Similarity=0.237 Sum_probs=297.4
Q ss_pred hhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh-----------
Q 000050 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 1649 (2622)
Q Consensus 1583 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~----------- 1649 (2622)
..+.+.+..+|+.|.+.+..+... + .+..+..+...+.+ ..+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 0 12344455555544 3689999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh-HHHhHhHHHHHhccCC--ChhhHHHHHHHHHH
Q 000050 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2622)
Q Consensus 1650 ----~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~-~l~~llp~l~~~l~~~--~~~vR~~al~~l~~ 1722 (2622)
++++....+...++..+.++.+. + ..++.+++.++...+.. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223344666677777766544 4 67888899998877654 6789999999999888 89999999999999
Q ss_pred hhhhh-CcchhhhHHhHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhc----h-hhhhHHHHhhccCCCchHHHHH
Q 000050 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1794 (2622)
Q Consensus 1723 L~~~~-g~~f~p~l~~ii~~ll~~L~d~--~~~VR~~al~al~~lv~~~~~~----~-i~~llp~l~~~l~d~~~rvR~~ 1794 (2622)
++... +..+.+|.+.+++.+..++.|+ +..||..|++++..++...... . .+.+++.+.+.+.+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6678899999999999999998 7899999999998765432211 1 1335777777788889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~-~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+++.++.+....+... + ++.. .+++.+.....|.+..||..|++.|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999999875532110 0 1112 344444445578889999999999999986
Q ss_pred hC---------------------hhhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhccchhhhHH
Q 000050 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2622)
Q Consensus 1874 ~~---------------------p~~l~~~l~~ll~~L~~~L~s-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1925 (2622)
.. ...++++++.++|.+++.+.+ .++..|..|..+|+.++...|+.+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123445678888888888853 34679999999999999999988889999
Q ss_pred HHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000050 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2622)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~-----~ 2000 (2622)
|.+...++++++.+|.+++.+++.+.....++.+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987755545566788999999999999999999999999999999887753 3
Q ss_pred hhhhHHHHHHhc
Q 000050 2001 IDEIVPTLLHAL 2012 (2622)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2622)
+++++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 445555555444
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=3.8e-17 Score=218.72 Aligned_cols=395 Identities=13% Similarity=0.144 Sum_probs=296.4
Q ss_pred hHhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000050 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2622)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~~la~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2622)
+..++..+.++|..+|+.|.+.|..+... .|+.+..++..+.+ . ..+..+|..++..|+.....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-------~-----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc-------C-----CCChHHHHHHHHHHHHhccccch
Confidence 34677778899999999999999886543 45555444444431 0 23568999999999987532
Q ss_pred ------------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhhhh
Q 000050 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2622)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~~~ 1274 (2622)
++++....+...++ ..+.+.++.| ..+..++..+....+. ..|+.++|.+.+.+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 23333334555554 5677777788 7788888887777655 479999999988887521 034
Q ss_pred hhhhHHHHHHHHHhhhhcc--CCcchHHHHHHHHHHcCCC--CHHHHHHHHhhhHhhHhhhccch-----HH-HHHHHHH
Q 000050 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLD 1344 (2622)
Q Consensus 1275 ~vr~~~~~~~~~la~~l~~--~~~~v~~i~~~L~~~l~~~--~~~Vq~~a~~~L~~lv~~~~~~~-----~~-~i~~Ll~ 1344 (2622)
.+|+++...++.+.+.... ..+....+++.+...+.++ +++||..+++|+..++....+.. .. +++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6789999999999875422 3566788999999999998 79999999999988765443211 12 233333
Q ss_pred HHhcCCChHHHHHHHHHHHHHHhhhCccchh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh------------
Q 000050 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2622)
Q Consensus 1345 ~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~------------ 1410 (2622)
.+..+.+...|..++.+|..++...+..... .. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445567789999999999999876532111 12 5778877778776 7899999999999988753
Q ss_pred ---------cccchhHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhh
Q 000050 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2622)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2622)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456778999999998853 2457999999999999998886667888899999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-----hhHHhHHHHHHhhc
Q 000050 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2622)
Q Consensus 1475 r~~a~~~L~~la~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~ilp~Ll~~l 1546 (2622)
|.+++.+++.+++++. +.+..+++.++|.+...++|+++.||.+|+++|+.+++.+++ +++..++|.|++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788899999999999999999999999999999988764 45667777776654
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.75 E-value=7.8e-15 Score=214.96 Aligned_cols=753 Identities=10% Similarity=0.082 Sum_probs=418.4
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------H
Q 000050 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------D 1119 (2622)
Q Consensus 1048 ~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~ 1119 (2622)
.++..-.+.+++.++|+++++|++..|++|++.|++.... |....+...+. ..+.+..+|-+|. .
T Consensus 7 ~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHh
Confidence 3444445567899999999999999999999999876311 22233333332 2345666776654 3
Q ss_pred HHHhcCCCCCCCh-HhHHHHhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCC
Q 000050 1120 IWDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2622)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 1188 (2622)
.|.....+.+..+ ..++..+.+. +..+|++.+++++.++. .||+.|++++..+.+... .
T Consensus 80 ~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------ 149 (1049)
T 3m1i_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------ 149 (1049)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T------
T ss_pred hCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c------
Confidence 5754332222224 5666666532 47899999999999975 588888888888887641 1
Q ss_pred CCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCCC
Q 000050 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS 1268 (2622)
Q Consensus 1189 ~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~~ 1268 (2622)
+-..+..+..+|..+++.+.+-.. .+....-|....+ .+. ...+.+++.+...+... .
T Consensus 150 -~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~-~ 207 (1049)
T 3m1i_C 150 -SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQG-S 207 (1049)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHC-C
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhc-C
Confidence 113466777788877754322100 0011111111111 111 12455566666666532 1
Q ss_pred ChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhh-ccc-------hHHHHH
Q 000050 1269 DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVS 1340 (2622)
Q Consensus 1269 ~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~-~~~-------~~~~i~ 1340 (2622)
...++..+...++....+.+........+++.+.+.+. .+++++..+.+|+..++... .+. ...+++
T Consensus 208 ----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~ 282 (1049)
T 3m1i_C 208 ----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1049)
T ss_dssp ----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Confidence 13455555555544433332100000113343442111 26889999999998887552 111 112223
Q ss_pred HHHHHHhc---------------C--CChHHHHHHHHHHHHHHhhhC-----ccchhh--hcHHHHHHHHHhCCCCHHHH
Q 000050 1341 RLLDQLMK---------------S--DKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRR 1396 (2622)
Q Consensus 1341 ~Ll~~L~~---------------~--~~~~~r~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~l~~~~~~~~R 1396 (2622)
.+++.+.. . .+.......+..+..+..... ...... ..+++.+....... +..++
T Consensus 283 ~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~ 361 (1049)
T 3m1i_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELF 361 (1049)
T ss_dssp HHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHH
T ss_pred HHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 33332211 1 122233344444443332211 000110 13566666666665 67778
Q ss_pred HHHHHHHHHHHHHh------cccchhHHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHH
Q 000050 1397 EGALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMM 1448 (2622)
Q Consensus 1397 ~~al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~ 1448 (2622)
..++..+..+++.. ...+.+++.++++.++..+.-+ + ...|.++.+++..+.
T Consensus 362 ~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~ 441 (1049)
T 3m1i_C 362 KTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLT 441 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHH
Confidence 88887777877732 2456788899999988876311 0 145677788888887
Q ss_pred HhhcHHhHHhhHHHHHhhcc--CCChhhHHHHHHHHHHHHhhCchhhh-hhhhhhHHHHhhhhc-----CCCHHHHHHHH
Q 000050 1449 SQLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQ 1520 (2622)
Q Consensus 1449 ~~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~ 1520 (2622)
...+...+..+++.+-+.+. +.+|+.+.+++.++|+++.+...... ..++.+++.+..+.. |+++.||..++
T Consensus 442 ~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~ 521 (1049)
T 3m1i_C 442 HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIM 521 (1049)
T ss_dssp HHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 55554455666666656664 46899999999999999987655533 447888888777543 46788888899
Q ss_pred HHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHH
Q 000050 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2622)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l 1600 (2622)
++++++++.+.+. ...+..+++.+..++.+.++.++..|+.++
T Consensus 522 ~~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al 564 (1049)
T 3m1i_C 522 YVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTF 564 (1049)
T ss_dssp HHHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 9999998765321 012233555566666777788889999999
Q ss_pred HHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhhhcCChH
Q 000050 1601 GNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNV 1673 (2622)
Q Consensus 1601 ~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~-~~~~~ll~~Ll~~L~~~~~~~ 1673 (2622)
.+++..... +.++.||++.++..+...+.+...+-+....++++.++...|+ +....++..++..+.
T Consensus 565 ~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------ 638 (1049)
T 3m1i_C 565 IKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------ 638 (1049)
T ss_dssp HHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH------
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH------
Confidence 888875421 1233599999999999999887777788889999999987763 222223322222111
Q ss_pred HHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC-Chh-hHH--HHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCC
Q 000050 1674 ERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749 (2622)
Q Consensus 1674 ~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~-~~~-vR~--~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~ 1749 (2622)
+.+..+.. ...+..... +++ .+. ..+.++..++..+|..|.|++..+++.++..+..
T Consensus 639 ------~~~~~~~~------------~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~- 699 (1049)
T 3m1i_C 639 ------MAWDTIVE------------QSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA- 699 (1049)
T ss_dssp ------HHHHHHHH------------HHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH-
T ss_pred ------HHHHHHHH------------HHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-
Confidence 00111110 000000000 111 121 3356778888999999999988777765432211
Q ss_pred ChHHHHHHHHHHHHHHHHhhhc--------hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC
Q 000050 1750 NESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1821 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~--------~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dd 1821 (2622)
. ...+...+...+.. ....+.|.+ ..++..+....
T Consensus 700 ------~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l---------------~~ll~~~~~~~--------------- 742 (1049)
T 3m1i_C 700 ------V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEI---------------LKLVETYISKA--------------- 742 (1049)
T ss_dssp ------H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH---------------HHHHHHHHHHC---------------
T ss_pred ------H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHH---------------HHHHHHHHHhC---------------
Confidence 0 00011101000110 001111111 11222222110
Q ss_pred CcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHh----c-
Q 000050 1822 EGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A- 1895 (2622)
Q Consensus 1822 e~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L----~- 1895 (2622)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 --~~l~~~---~~-----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~ 812 (1049)
T 3m1i_C 743 --RNLDDV---VK-----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK 812 (1049)
T ss_dssp --SCHHHH---HH-----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS
T ss_pred --CCHHHH---HH-----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 000000 00 0111121111111000000000 246677777777666667777777777766653 2
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh
Q 000050 1896 --SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1896 --s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~ 1954 (2622)
+.++++|......++.+++.....+ +..++.....++..+++.+...++..+.+++...
T Consensus 813 ~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 813 DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4578999999999999998765443 2334444555677788888888888777776643
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=3.5e-14 Score=192.87 Aligned_cols=675 Identities=12% Similarity=0.085 Sum_probs=423.5
Q ss_pred CChhhHHHHHHHHHHhhhh-hCcchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhchh---hh-hHHHHh
Q 000050 1708 QRASVRDGYLTLFKYLPRS-LGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL---PL-LLPAVE 1781 (2622)
Q Consensus 1708 ~~~~vR~~al~~l~~L~~~-~g~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~i---~~-llp~l~ 1781 (2622)
.+.+-|+.|+.-+..|++. .|.+. =|-..-+..+.+.+.. .++++.-+|++.+..+++....... .. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 4556677777777666643 22211 1112234556666666 6789999999999988876533321 11 245666
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc--CCCHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~--D~~~~ 1859 (2622)
+.+..++..+-.+++.++..++..++|...+.. .-.|+ +++..- ....+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPDK--------ELCTRN-NREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCCH--------HHHHHT-HHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCcH--------HHHhhh-hhHHHHHHHHHHHHhhccccChh
Confidence 777777888888888899998888765422111 00111 121111 1122344444444433 35788
Q ss_pred HHHHHHHHHHHHHhhCh-hhHHHHHH-HHHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHHHhc-----cchh
Q 000050 1860 VRQAALHVWKTIVANTP-KTLKEIMP-VLMNTLISSLA---SS--------SSERRQVAGRALGELVRKLG-----ERVL 1921 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p-~~l~~~l~-~ll~~L~~~L~---s~--------~~~~R~~A~~~L~~lv~~~~-----~~~l 1921 (2622)
.|.++++.+-.-+.... +....++. .-+..++.... +. ..+.|..+.-++.++.+.++ +.+.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 245 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT 245 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999877664331 11111111 11222222222 11 45799999999999998887 3344
Q ss_pred hhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000050 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2622)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~ 2000 (2622)
..+-..+...+...+.+.+..++.++..++.......-.-+ ....++.+..++..+++.++..|..+++.+... ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~ 323 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDK 323 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHH
Confidence 44555555566677888888899999988653322111122 257889999999999999999999999886432 211
Q ss_pred h----hhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCC-----Chh-h
Q 000050 2001 I----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGP-----GLN-F 2070 (2622)
Q Consensus 2001 ~----~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~-----~l~-~ 2070 (2622)
. +.-+|.|...+.+++.. ++.+++.+|..++...+. .+. .
T Consensus 324 R~~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 324 AKALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHTTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHHHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhc
Confidence 1 11235555555433311 011222333333321121 111 1
Q ss_pred hHhhhHHHHHHhcCCC--CHHHHHHHHHHHHHhhhccCh-hc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 000050 2071 HLGTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2622)
Q Consensus 2071 ~l~~il~~Ll~~l~~~--~~~vr~~a~~al~~l~~~~~~-~~-l--~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~ 2144 (2622)
-+..+++.+.+.|.++ +++++..+.+++..+....+. .. . ..+++.|++.+++++..++..++.+|+.++....
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 2467788888888766 789999999999988653321 11 2 3588888999888899999999999999987431
Q ss_pred c-----------cccc-------------cH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhh
Q 000050 2145 L-----------YLVD-------------EA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 2191 (2622)
Q Consensus 2145 ~-----------~l~~-------------~~---------~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~ 2191 (2622)
. .+.. +. ...++.|+.++..+++.++..|..+|..++... +
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~---- 527 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E---- 527 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H----
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H----
Confidence 0 0100 11 146888999999999999999999999997431 1
Q ss_pred HHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhh--hhh
Q 000050 2192 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK--EFV 2269 (2622)
Q Consensus 2192 lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~--p~v 2269 (2622)
.++.+.. ...+|.|+..+.++++..|+.|+.+|+.++....++..- ..+
T Consensus 528 ----~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 528 ----LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp ----HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred ----HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 1121111 115778888888899999999999999999776543321 123
Q ss_pred hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccC-ch-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC-
Q 000050 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR- 2346 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~- 2346 (2622)
...++||+..+....+...+..++.+|..|+...+. .+. .+ ...++.+...+.++++.+|..|+.+++.|+.....
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 457899999997533334456789999988753211 110 00 12355677777888999999999999999653211
Q ss_pred ---h--hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000050 2347 ---V--DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2622)
Q Consensus 2347 ---~--~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2622)
+ ...++.|+..+...+..+|..+.+||..+........ .... ...++.|..++.+.+..++..++.+++.++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1 2467788888888889999999999999986321111 1222 246678888899999999999999999988
Q ss_pred hhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhcc---CChhHHHhHHHHH
Q 000050 2420 QCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD---EKFPLREASTKAL 2496 (2622)
Q Consensus 2420 ~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~---~~~~ir~~a~~al 2496 (2622)
... + +.. ..+.+ . .+++.|+..++. .+..+++.|..|+
T Consensus 737 ~~s-~-e~~---~~l~e------------------------------~----G~i~~L~~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 737 NAG-E-EIA---KKLFE------------------------------T----DIMELLSGLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp TTC-H-HHH---HHHHT------------------------------S----THHHHHTTSCCCTTSTTHHHHHHHHHHH
T ss_pred hCC-H-HHH---HHHHH------------------------------C----CCHHHHHHHHhCcccCcHHHHHHHHHHH
Confidence 632 1 111 11110 1 123444444433 3688999999999
Q ss_pred HHHHhhhh
Q 000050 2497 GRLLLHQI 2504 (2622)
Q Consensus 2497 g~ll~~~~ 2504 (2622)
..++....
T Consensus 778 ~~ll~~g~ 785 (810)
T 3now_A 778 AAAERYRI 785 (810)
T ss_dssp HHHHHHHT
T ss_pred HHHHhCCC
Confidence 99988864
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.73 E-value=6.9e-13 Score=194.11 Aligned_cols=696 Identities=11% Similarity=0.078 Sum_probs=406.8
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----h
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----M 1650 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~----~ 1650 (2622)
.+...+.....+.+++.|+.|.+.+..+-.. | + ..+.+..++. +.++.+|..|+..|...+.. +
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 3444444434456788999999999887552 1 1 2233334443 56789999999999998864 2
Q ss_pred CCCCchhhHHHHHHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-----CChhhHHHHHHHHHHh
Q 000050 1651 GEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKYL 1723 (2622)
Q Consensus 1651 g~~~~~~ll~~Ll~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-----~~~~vR~~al~~l~~L 1723 (2622)
.++....+-..+++.+... .+..+|...+.+++.++.....+.|+++++.+++.+++ +++..++.++.+|..+
T Consensus 94 ~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 94 PTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 3333444555556655442 24668889999999999887666788899999988765 3566788999999888
Q ss_pred hhhh-------------CcchhhhHHhHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCC
Q 000050 1724 PRSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFN 1786 (2622)
Q Consensus 1724 ~~~~-------------g~~f~p~l~~ii~~ll~~L~d~~~--~VR~~al~al~~lv~~~~~~~i--~~llp~l~~~l~d 1786 (2622)
+... ...+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+.
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~- 251 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ- 251 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT-
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC-
Confidence 8533 122344556666666666554322 245555554433322 111111 223333333331
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHH
Q 000050 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1787 ~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~ 1866 (2622)
+|..|..+++++..
T Consensus 252 -~~~~~~~a~~~l~~----------------------------------------------------------------- 265 (963)
T 2x19_B 252 -DSELFDSSVEAIVN----------------------------------------------------------------- 265 (963)
T ss_dssp -STTTHHHHHHHHHH-----------------------------------------------------------------
T ss_pred -CchHHHHHHHHHHH-----------------------------------------------------------------
Confidence 34444444444444
Q ss_pred HHHHHHhhC-hhhHHHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHHhc---------cchhhhHHHHHh
Q 000050 1867 VWKTIVANT-PKTLKEIMPVLMNTLIS-------SLASSSSERRQVAGRALGELVRKLG---------ERVLPSIIPILS 1929 (2622)
Q Consensus 1867 ~l~~l~~~~-p~~l~~~l~~ll~~L~~-------~L~s~~~~~R~~A~~~L~~lv~~~~---------~~~l~~llp~L~ 1929 (2622)
++... +....+++..+++.++. .+...+.+.....++.+..+.+... ...+..+++.+.
T Consensus 266 ----i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll 341 (963)
T 2x19_B 266 ----AISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIM 341 (963)
T ss_dssp ----HHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ----HHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHH
Confidence 44321 11111122222221111 1122233322233333333332111 112334555555
Q ss_pred hhcCC-----CChhhHHhHHHHHHHHHHhh----------ChhhHHHhHHhHHHHHHHHhcCCcH---------------
Q 000050 1930 RGLKD-----PSASRRQGVCIGLSEVMASA----------GKSQLLSFMDELIPTIRTALCDSIL--------------- 1979 (2622)
Q Consensus 1930 ~~L~d-----~~~~vR~~a~~~L~~li~~~----------~~~~l~~~l~~ll~~l~~~L~d~d~--------------- 1979 (2622)
..... .+.++...++.....++... ....+.+++..+++.+...+..++.
T Consensus 342 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~ 421 (963)
T 2x19_B 342 FCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR 421 (963)
T ss_dssp HHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence 54443 34556666665555544421 1233456777788877776642211
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC--CchHHHHHH
Q 000050 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP--LSAFNAHAL 2057 (2622)
Q Consensus 1980 ~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~--~~~~~~~aL 2057 (2622)
+.|..+..++..+....|....+.+++.+-..+.... .... .......++
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------------------~~~~w~~~eaal~al 473 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE----------------------------EPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC----------------------------CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC----------------------------CCCchHHHHHHHHHH
Confidence 1234444555555544443333333333222221000 0000 011234567
Q ss_pred HHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCCCChhHHHHHHHH
Q 000050 2058 GALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYL 2135 (2622)
Q Consensus 2058 ~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~ 2135 (2622)
+++++.......++++.+++.+. .+.++++.+|..++++++.+...+. .+.+..+++.++..+.+ +.+|..|+.+
T Consensus 474 ~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~a 550 (963)
T 2x19_B 474 QSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVST 550 (963)
T ss_dssp HHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHH
T ss_pred HHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHH
Confidence 77776555555677788887544 4455678899999999998876543 35688889999988865 8999999999
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCcc----chhhHHHHHHHHHhhchhhhhh
Q 000050 2136 IGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKE----VQPSYIKVIRDAISTSRDKERR 2209 (2622)
Q Consensus 2136 L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~----~l~~lv~~l~~~l~~~~~~~~~ 2209 (2622)
+..+++..+..+.+|+++++..+...++. .+...+..+.++++.++...+.+ ++..++.++.+.+...
T Consensus 551 l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~------ 624 (963)
T 2x19_B 551 LKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL------ 624 (963)
T ss_dssp HHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999988888999999999999998874 45788999999999998766521 2222333332222211
Q ss_pred hhcCCccccccCCCCcCchhhHHHHHHHHccC-CHHHH---HHHHHHHHHHHhhcCh---------------------hh
Q 000050 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELR---EQAALGLGELIEVTSE---------------------QS 2264 (2622)
Q Consensus 2210 ~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~-~~~~r---~~aa~~L~~l~~~~~~---------------------~~ 2264 (2622)
..+. +++.+ .....+|+.++...+. ..
T Consensus 625 ----------------------------~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (963)
T 2x19_B 625 ----------------------------AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP 676 (963)
T ss_dssp ----------------------------HSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH
T ss_pred ----------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc
Confidence 1111 22222 2455666666665441 12
Q ss_pred hhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHh
Q 000050 2265 LKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~-~~~vR~~Aa~aLg~L~~ 2342 (2622)
+.++...+.+.+.+++... .+..+...++.+++.++...|..+.||+|.+.+.++...... ... ....++.++.
T Consensus 677 ~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~ 752 (963)
T 2x19_B 677 VVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH----HHHHHHHHHH
Confidence 4556667777766666431 256789999999999999999999999999998888766542 222 2233343322
Q ss_pred ---ccc----ChhhHHHHHHHh----hh-c--CCHhHHHHHHHHHHHHHhhcCCCC-ChHH-HHHHHHHHHHhhcCCCHH
Q 000050 2343 ---LST----RVDPLVGDLLSS----LQ-V--SDAGIREAILTALKGVLKHAGKSV-SSAV-KIRVYSVLKDLVYHDDDH 2406 (2622)
Q Consensus 2343 ---~~~----~~~~ll~~Ll~~----l~-~--~d~~vr~~~l~AL~~vi~~~g~~~-~~~~-~~~i~~~L~~~l~~~~~~ 2406 (2622)
..+ .++.++..++.. ++ + .+++++...+..+..++..+...+ ..+. ...++..+...+.+.+..
T Consensus 753 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 832 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAP 832 (963)
T ss_dssp HHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHH
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHH
Confidence 122 233333333332 22 2 258999999999999998876543 2343 677888888888888888
Q ss_pred HHHHHHHHHHHHHhhcC
Q 000050 2407 VRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~ 2423 (2622)
+...+...+..+....+
T Consensus 833 ~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 833 TVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 88888888888776543
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.71 E-value=1.5e-13 Score=186.78 Aligned_cols=677 Identities=13% Similarity=0.057 Sum_probs=425.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccch---h-hhHHHHH
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV---L-PSIIPIL 1928 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~-~ll~~L~~~L~s-~~~~~R~~A~~~L~~lv~~~~~~~---l-~~llp~L 1928 (2622)
..+.+-|+.|+.-+-.++..... -..++. ..+..+...+.+ .+++....|.++|+++|....... + .-=.|.+
T Consensus 19 ~~~~~~~~~a~~nl~vl~re~ag-a~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~ 97 (810)
T 3now_A 19 ATPIDKRRAAANNLVVLAKEQTG-AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWF 97 (810)
T ss_dssp CCSSHHHHHHHHHHHHHSSCHHH-HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred ccCHHHHHHHHhhceeeeccccc-hHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHH
Confidence 44556788888877777653221 122222 224455555665 789999999999999997643332 1 1224566
Q ss_pred hhhcCCCChhhHHhHHHHHHHHHHhhChh--------------hHHHhHHhHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Q 000050 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKS--------------QLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1929 ~~~L~d~~~~vR~~a~~~L~~li~~~~~~--------------~l~~~l~~ll~~l~~~L~d~--d~~VR~~A~~al~~l 1992 (2622)
...+..++++.-.++|..+..++....+. .-...++.++..+...+.+. ....|+++...+-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~-- 175 (810)
T 3now_A 98 MRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT-- 175 (810)
T ss_dssp HHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH--
Confidence 66777788888889998888877655321 11235677888888888776 5778888766554
Q ss_pred HHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCC-hhhh
Q 000050 1993 FKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFH 2071 (2622)
Q Consensus 1993 ~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~-l~~~ 2071 (2622)
++........ ...+.. ...+..+-.+.+.-.+...+.-+| .....+...+-++..+-+..+.+ -...
T Consensus 176 -~~~~~~~~~~-~~~~~~--------~~g~~~~l~v~~~~~~~~~~~~~~--~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 176 -RNVHYTALEW-AERLVE--------IRGLCRLLDVCSELEDYKYESAMD--ITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp -HHTTCTTTTH-HHHHHH--------TTHHHHHHHHHTCCSSSCCSSCCC--CCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred -HhCCcccccc-ccchhh--------HhhHHHHHHHHhcCccccccccCC--CChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 3333221110 001111 123444444443211111111111 01122223444555555544422 1233
Q ss_pred HhhhHHHHHHh-cCCCCHHHHHHHHHHHHHhhhccChhc-----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 000050 2072 LGTILPALLSA-MGDDDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL 2145 (2622)
Q Consensus 2072 l~~il~~Ll~~-l~~~~~~vr~~a~~al~~l~~~~~~~~-----l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~ 2145 (2622)
+...+..++.. +...+.+....+.+++..++....+.+ -...++.++..+.+++..++..|+++++..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~-- 321 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-- 321 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH--
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc--
Confidence 44444444443 456666667778888888876443211 2357788888888999999999999999986542
Q ss_pred cccccH-HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCC
Q 000050 2146 YLVDEA-PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2622)
Q Consensus 2146 ~l~~~~-~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~ 2224 (2622)
+...++ ..-++.|..++.+.+..++..|..+|..+......+. ..+.|. .
T Consensus 322 ~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~----------------------------~~~~~~-~ 372 (810)
T 3now_A 322 DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA----------------------------AIRPFG-D 372 (810)
T ss_dssp HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT----------------------------SCCSST-T
T ss_pred HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCc----------------------------cccchh-h
Confidence 111111 1223788888888888888888888877753211000 011111 1
Q ss_pred cCchhhHHHHHHHHccC--CHHHHHHHHHHHHHHHhhcChhhhhhh-h--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHH
Q 000050 2225 KALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEF-V--IPITGPLIRIIGDRFPWQVKSAILSTLSII 2299 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~-v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L 2299 (2622)
..+.+++|.|.+.|.++ +.+++..|+.+|+.++... ..+.. + ..++++|+..+... +..+...++.+|+.|
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~---~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NL 448 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA---ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNL 448 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH---HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHH
Confidence 23567889999999887 7899999999999998643 22222 2 35778899998864 678999999999999
Q ss_pred HHhcCCC------------ccC------------chH---------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC
Q 000050 2300 IRKGGIA------------LKP------------FLP---------QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR 2346 (2622)
Q Consensus 2300 ~~~~~~~------------l~p------------~l~---------~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~ 2346 (2622)
....+.. .+. +.. ...+.|+..+.++++.+|..|+.+|+.++.....
T Consensus 449 t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~ 528 (810)
T 3now_A 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKEL 528 (810)
T ss_dssp TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHH
T ss_pred cCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 8743210 001 111 3577899999999999999999999999753222
Q ss_pred h-----hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHH
Q 000050 2347 V-----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGIM 2418 (2622)
Q Consensus 2347 ~-----~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~L 2418 (2622)
. ...++.|+..+++++...|..+.+||..+........ .......+++.|..++.+. +...+..++.+|+.|
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 1 2357888999988888999999999999886533211 1111233677777888754 434455788899998
Q ss_pred HhhcCchHHHH-----HHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhH--HHHHHHHHhhhccCChhHHHh
Q 000050 2419 SQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF--LSILDRLKSSLKDEKFPLREA 2491 (2622)
Q Consensus 2419 ~~~~~~~~~~~-----~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~--~~i~~~l~~~~~~~~~~ir~~ 2491 (2622)
+...+ +.... .++.+.+.+.+++...+..++.+++.+... ++.. ..+. ...++.|...+.+++..+|..
T Consensus 609 a~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~--~~~v~~~g~l~~Lv~LL~s~d~~vq~~ 684 (810)
T 3now_A 609 ASMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVI--KMFEGNNDRVKFLALLCEDEDEETATA 684 (810)
T ss_dssp TTSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHH--HHHHSSSSHHHHHHHGGGCSSHHHHHH
T ss_pred hcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHH--HHHHhccCcHHHHHHHhcCCCHHHHHH
Confidence 86532 22111 122232322344445666667777766542 2211 0111 146778888899999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCchhh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hhHHHHHHhhh
Q 000050 2492 STKALGRLLLHQIQSGPANTTVV---VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECL 2566 (2622)
Q Consensus 2492 a~~alg~ll~~~~~~~~~~~~~l---~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~ 2566 (2622)
|..|++.+..+.... ...+ ...+++++..+.+++.++|..|+.+|..++...++. ..++ ...+|+|.+.+
T Consensus 685 Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 685 CAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSC
T ss_pred HHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHH
Confidence 999999998742211 0122 247889999999999999999999999999865543 3333 45899999998
Q ss_pred cCC---cchhhchhHHHHHHHhccccc
Q 000050 2567 KDG---STPVRLAAERCAVHAFQLTRG 2590 (2622)
Q Consensus 2567 ~~~---~~~vk~aae~a~~~~~~~~~~ 2590 (2622)
+.+ +..+...|..|+-.+++.-.-
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred hCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 755 678888888888888776554
No 22
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.71 E-value=1.4e-13 Score=201.24 Aligned_cols=696 Identities=10% Similarity=0.057 Sum_probs=393.8
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~~----~g~~~~~~ll~~L 1662 (2622)
.+...|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 3455677787777765331 122333444443 46789999999999988864 2333334445555
Q ss_pred HHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC------ChhhHHHHHHHHHHhhhhhC-cc---
Q 000050 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2622)
Q Consensus 1663 l~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~------~~~vR~~al~~l~~L~~~~g-~~--- 1730 (2622)
++.+... .+..+|...+.+++.++..... .|.++++.+.+.+++. ++..++.++..|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5555442 2456888999999999888766 7888888888887654 56678888888887774321 10
Q ss_pred --------hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000050 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2622)
Q Consensus 1731 --------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~-~l~d~~~rvR~~a~~ll~~ 1801 (2622)
+..+++.+++.+...+. .... ...+.+|.++..++++++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~-------------------------------~~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLK-------------------------------LQMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHH-------------------------------HHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------cccCCCCCccchhHHHHHHHHHHH
Confidence 01111111111111110 0000 0011135677777777777
Q ss_pred HHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHH---------------hccCCCHHHHHHHHH
Q 000050 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2622)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2622)
++.. .+.. .+ .. ..+++.++. +..+.+..+|+.|++
T Consensus 216 ~~~~-~~ip-----------~~-~~----------------~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-GC----------------VTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-GH----------------HHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-cc----------------ccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6642 0000 00 00 112222221 012245689999999
Q ss_pred HHHHHHhhCh-----hhHHHHHHHHHHHHH---HHhcCCCH---HHHHHHHHHHHHHHHHh----c----------cchh
Q 000050 1867 VWKTIVANTP-----KTLKEIMPVLMNTLI---SSLASSSS---ERRQVAGRALGELVRKL----G----------ERVL 1921 (2622)
Q Consensus 1867 ~l~~l~~~~p-----~~l~~~l~~ll~~L~---~~L~s~~~---~~R~~A~~~L~~lv~~~----~----------~~~l 1921 (2622)
++..++...+ ..+..+++.++...- ....+.+. +.....++.+..+.+.. . ...+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999997432 123333333333221 12233342 55555566666555321 1 1123
Q ss_pred hhHHHHHhhhcC-----CCChhhHHhHHHHHHHHHHhh-----------ChhhHHHhHHhHHHHHHHHhcCC--------
Q 000050 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALCDS-------- 1977 (2622)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~~L~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~d~-------- 1977 (2622)
..+++.+..... ..+.++...++..+..+.... ....+.+++..+++.+...+.-+
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 345555555432 246778888887766654421 11344677788888877766311
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCc
Q 000050 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2622)
Q Consensus 1978 d~-------~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~ 2050 (2622)
++ ..|..+..++..++...|...++.+++.+-+.+.... .+ + .+....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~---~------~~w~~~ 481 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH---P------THWTKL 481 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC---T------TCCHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC---C------CcHHHH
Confidence 11 3455566666665555553333333333332221100 00 0 000011
Q ss_pred hHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcC--CCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCCCCh
Q 000050 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQA 2126 (2622)
Q Consensus 2051 ~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~--~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d~~~ 2126 (2622)
..+..+++++++.......++++.+++ ++..+. +.++.+|..++++++.+...+. .+.+..+++.++..+ + +
T Consensus 482 eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--h
Confidence 123455666666544444577888888 444444 4589999999999999887654 367899999999988 4 8
Q ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc----hhhHHHHHHHHH
Q 000050 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAI 2200 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~~a~~aL~~l~~~~~~~~----l~~lv~~l~~~l 2200 (2622)
.++..|+.++..+++..+..+.+|++.++..+...++. .+...+..+.++++.++...+.+. +..++.++.+.+
T Consensus 558 ~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l 637 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEEL 637 (971)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988888999999999999999986 467889999999999988765322 222333333322
Q ss_pred hhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccC--CHHHHHH---HHHHHHHHHhhcC------------hh
Q 000050 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQ---AALGLGELIEVTS------------EQ 2263 (2622)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~--~~~~r~~---aa~~L~~l~~~~~------------~~ 2263 (2622)
... +.+. +++.+.. +..+|+.++...+ .+
T Consensus 638 ~~~----------------------------------~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~ 683 (971)
T 2x1g_F 638 QAI----------------------------------CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ 683 (971)
T ss_dssp HHH----------------------------------HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHH----------------------------------HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence 211 1111 1222222 2333333333222 23
Q ss_pred hhhhhhhhhhHHHHHhhcCC-CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2264 SLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2264 ~l~p~v~~i~~~Li~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
.+.++...+.+.+..++... .+..+...++.+++.++...|..+.||+|++.+.++..++.... ..+...++.++.
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~ 760 (971)
T 2x1g_F 684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIV 760 (971)
T ss_dssp CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHH
Confidence 56778888888877777543 25689999999999999999999999999999999998877422 235566666643
Q ss_pred -ccc------ChhhHHHHHHH----hhhc-------CCHhHHHHHHHHHHHHHhhcCCCCC-hHH-HHHHHHHHHHhhcC
Q 000050 2343 -LST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYH 2402 (2622)
Q Consensus 2343 -~~~------~~~~ll~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l~~ 2402 (2622)
++. .+..++..+.. .+.. .+++++...+.-+..++.++...+. .+. ...++......+..
T Consensus 761 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~ 840 (971)
T 2x1g_F 761 MFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTL 840 (971)
T ss_dssp TCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTS
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 221 23344443333 2222 2578899999888888887665432 244 67777777777766
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000050 2403 DDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
++....+++..++..+...
T Consensus 841 ~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 841 PESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6555666677777666544
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=5.2e-14 Score=192.48 Aligned_cols=508 Identities=15% Similarity=0.144 Sum_probs=346.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHH
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1968 (2622)
.+.+.+.+++...|..+..-+-.+ ...|.++ +.+.+.+.+.+.+++..+|+.+..++..+... .+ +...-+++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~----e~~~l~~n 89 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QP----DMAIMAVN 89 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SH----HHHHTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Cc----hHHHHHHH
Confidence 345556777766665544433322 2345543 34455555677888888888887777765442 11 22344566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCC
Q 000050 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2622)
Q Consensus 1969 ~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~ 2048 (2622)
.+.+.+.|+++.+|..|..+++.+. .+
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~---~~-------------------------------------------------- 116 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIR---VD-------------------------------------------------- 116 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCC---SG--------------------------------------------------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC---hH--------------------------------------------------
Confidence 7777788888888887766665431 11
Q ss_pred CchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHH--HHHHHHHhhcCCCCh
Q 000050 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQA 2126 (2622)
Q Consensus 2049 ~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~~l~d~~~ 2126 (2622)
...+.++|.+.+.+.++++.+|..|..|+..+.... ++.+. .+++.+...+.|+++
T Consensus 117 ---------------------~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~ 174 (591)
T 2vgl_B 117 ---------------------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNP 174 (591)
T ss_dssp ---------------------GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCH
T ss_pred ---------------------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCCh
Confidence 112334566777788899999999999999998743 34444 688999999999999
Q ss_pred hHHHHHHHHHHHHHhhcccc-ccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchh
Q 000050 2127 SIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD 2205 (2622)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~-l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~ 2205 (2622)
.+|.+|+.+++.++...+.. +....+..+..|+..+.+.++-.+.....+++.+.. .+
T Consensus 175 ~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~------------------ 233 (591)
T 2vgl_B 175 MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD------------------ 233 (591)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS------------------
T ss_pred hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC------------------
Confidence 99999999999998876533 344556777888887777666555544444433321 10
Q ss_pred hhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhc--ChhhhhhhhhhhhHHHHHhhcCC
Q 000050 2206 KERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT--SEQSLKEFVIPITGPLIRIIGDR 2283 (2622)
Q Consensus 2206 ~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~--~~~~l~p~v~~i~~~Li~~l~~~ 2283 (2622)
+.....+++.+...+.+.++.++..|+.++..+.... +++.++..+..+.++|+..+.
T Consensus 234 ------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-- 293 (591)
T 2vgl_B 234 ------------------DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-- 293 (591)
T ss_dssp ------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--
T ss_pred ------------------hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--
Confidence 0112235555555667778899999999999887543 334566666778888887664
Q ss_pred CCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCH
Q 000050 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2622)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~ 2363 (2622)
.+.++|..++.+|+.+....+..+.+++..+ + ++.+.+..+|..|...++.++. ..+++.++++|...+++.|.
T Consensus 294 ~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~ 367 (591)
T 2vgl_B 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDV 367 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCH
Confidence 3789999999999999998887776655432 2 3334349999999999998754 34688899999999988899
Q ss_pred hHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCC-CC
Q 000050 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS-PS 2442 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~-~~ 2442 (2622)
++|..+++++..+..+. ++....+++.|.+.+.+..+.++..+...++.+....|+.. ...+..+...+.+ .+
T Consensus 368 ~~r~~~v~aI~~la~~~-----~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~-~~~v~~L~~~l~~~~~ 441 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKV-----EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKY-ESIIATLCENLDSLDE 441 (591)
T ss_dssp HHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSC-CTTHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHhC-----hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchH-HHHHHHHHHHHHhccC
Confidence 99999999999988763 34567788888899999999999888899999988777521 1222333333322 22
Q ss_pred chhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHH
Q 000050 2443 WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVV 2522 (2622)
Q Consensus 2443 ~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~ 2522 (2622)
...+. +...++.+.+..+.. ..++++.+.+...+.++.+|..++.|+.++..... + ...+.+..++
T Consensus 442 ~~~~~----~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p----~---~~~~~i~~ll 507 (591)
T 2vgl_B 442 PDARA----AMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP----S---ETQELVQQVL 507 (591)
T ss_dssp HHHHH----HHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC----S---TTHHHHHHHH
T ss_pred HHHHH----HHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc----h---HHHHHHHHHH
Confidence 22232 333445554444422 35677778887888889999999999999987642 1 1234455555
Q ss_pred hh-cCC-CCHHHHHHHHHHHHHHHh
Q 000050 2523 SA-LHD-DSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2523 ~~-l~d-~s~dvr~~a~~~l~~~a~ 2545 (2622)
.. ..| .+.|||..|...++-+..
T Consensus 508 ~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 508 SLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHhhhcCCChHHHHHHHHHHHHHCc
Confidence 44 344 788999999988877654
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=2.2e-14 Score=196.27 Aligned_cols=470 Identities=13% Similarity=0.130 Sum_probs=301.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhH
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2622)
..+.+++.++ +...|+.+..++..+++..+ ....-+++.+.+.+.|+++.+|..|..++..+ ..+.-...++
T Consensus 52 ~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l~ 123 (591)
T 2vgl_B 52 PDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYLC 123 (591)
T ss_dssp HHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHHH
Confidence 3344566665 68888887777777766432 22334556777778888888887776665544 2444556777
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh----hHH
Q 000050 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIA 1536 (2622)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~ 1536 (2622)
|.+.+.+.++++.+|+.|+.+++.+....|+.+.. +.+++.+.++++|+++.|+.+|+.+|+.++..-++. ...
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 88888888888888888889888888776664432 467888899999999999999999999998754322 113
Q ss_pred hHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc-CCCCccc
Q 000050 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMI 1614 (2622)
Q Consensus 1537 ~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~l~ 1614 (2622)
..++.|++.+.+.++..+ ..++.+.. +. ..+.+....+++.+...+++.++.++..|+.++..+...+ .+++.+.
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~ 278 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN 278 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 445666666655555444 34444432 22 1233445678888888899999999999999999887543 1223344
Q ss_pred chHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH
Q 000050 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2622)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l 1694 (2622)
...+.+.+.+..++ ++++++|..+..+++.++...++ .+...+..++ .+.+++ ..+|..+...+..++ ..+..
T Consensus 279 ~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~nv 351 (591)
T 2vgl_B 279 MLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQANI 351 (591)
T ss_dssp HHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSSTH
T ss_pred HHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---ChhhH
Confidence 44566777777655 47899999999999999886443 2222221111 222333 567777776655543 23345
Q ss_pred HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh
Q 000050 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2622)
Q Consensus 1695 ~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~ 1774 (2622)
+.+++.+...+.+.++++|..++..++.++..++ +....+++.+++.+.+..+.++..+..++..++..++.. ..
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~ 426 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YE 426 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HH
Confidence 6778888888888899999999999988887654 344557777888888888888887777776666554321 01
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
..++.+.+.+. .
T Consensus 427 ~~v~~L~~~l~--------------------------------------------------------------------~ 438 (591)
T 2vgl_B 427 SIIATLCENLD--------------------------------------------------------------------S 438 (591)
T ss_dssp TTHHHHHHTTT--------------------------------------------------------------------T
T ss_pred HHHHHHHHHHH--------------------------------------------------------------------h
Confidence 11222222111 1
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCC
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD 1934 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d 1934 (2622)
+....+|..++-++|.+....+. .+.++..+.+.+.+.+..+|..+..++.++....++...+.+...+.....|
T Consensus 439 ~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d 513 (591)
T 2vgl_B 439 LDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQD 513 (591)
T ss_dssp CCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhc
Confidence 23344555555555555443322 2334444455555666777777777777776654433323333344444444
Q ss_pred -CChhhHHhHHHHHH
Q 000050 1935 -PSASRRQGVCIGLS 1948 (2622)
Q Consensus 1935 -~~~~vR~~a~~~L~ 1948 (2622)
.++++|..|+..+.
T Consensus 514 ~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 514 SDNPDLRDRGYIYWR 528 (591)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHH
Confidence 67888888876554
No 25
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.70 E-value=1.1e-12 Score=186.79 Aligned_cols=784 Identities=11% Similarity=0.087 Sum_probs=425.6
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------
Q 000050 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2622)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2622)
+.++.+.++-+.++++++.+.+|++..|.+|++.|++.... |....+...+. ..+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 44556667778999999999999999999999999875421 22222222322 2344556666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHHhc----CC-----CHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000050 1119 DIWDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2622)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~----~~-----~~~vR~~aa~~la~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2622)
..|.....+-...+ ..+++.+. ++ ...+|++.+++++.++ ..||+.|+..+..+.+...
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~---------- 148 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS---------- 148 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----------
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----------
Confidence 46865432222223 45555443 22 4678999999999986 4689999988888876531
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCC
Q 000050 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2622)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~ 1267 (2622)
.+-..+......|..+++.+.+ + .-.+-...-|....++.. ...+.+++.+...+....
T Consensus 149 -~~~~~~~~~L~iL~~L~EEV~~--------~----~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 149 -SSVNVCENNMIVLKLLSEEVFD--------F----SAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHT--------S----CTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCS
T ss_pred -CCHHHHHHHHHHHHHHHHHHHH--------h----hhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCC
Confidence 1112345555555555543211 0 000111122222222221 124556666666665421
Q ss_pred CChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHH-HHcCCCCHHHHHHHHhhhHhhHhhh--cc--chHH----H
Q 000050 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAPT----L 1338 (2622)
Q Consensus 1268 ~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~-~~l~~~~~~Vq~~a~~~L~~lv~~~--~~--~~~~----~ 1338 (2622)
...+...+...++.....++-..-.-..+++.++ ..+. +++.+.++++|+..++..- ++ ...+ +
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1223334444444444333211000012556666 5553 5689999999999988632 22 1222 2
Q ss_pred HHHHHHHH---------------hcCC--ChHHHHHHHHHHHHHHhhhCccch--hh-hcHHH----HHHHHHhCCCCHH
Q 000050 1339 VSRLLDQL---------------MKSD--KYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2622)
Q Consensus 1339 i~~Ll~~L---------------~~~~--~~~~r~~Aa~~L~~l~~~lg~~~l--~~-~~i~~----~L~~~l~~~~~~~ 1394 (2622)
++..++.+ ..++ |.....+-+..+..+......-.. .. .+++. .+..+.... +..
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 22333222 1111 122222333333333332211000 00 12332 444444443 454
Q ss_pred HHHHHHHHHHHHHHHh------cccchhHHHHHHHHHHHHcCCCC---------------------HHHH-HHHHHHHHH
Q 000050 1395 RREGALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQV---------------------VAVR-EAAECAARA 1446 (2622)
Q Consensus 1395 ~R~~al~al~~La~~~------~~~~~~~v~~ilp~ll~~l~D~~---------------------~~VR-~aa~~al~~ 1446 (2622)
.=..++.....+++.+ ...+.|++.++++.++..+.-|. .... +..-+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 4334444444455532 23578889999999998775332 0000 111255555
Q ss_pred HHHhhcHHhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhhc-----CCCHHHHHH
Q 000050 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2622)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR~a 1518 (2622)
+....+++.+..+++.+-+.+.+ .+|+.+.+++.++|+++.+... .....++.++|.|+.++. |.+..||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 55445555566677777666654 6899999999999999987554 477889999999999886 467788999
Q ss_pred HHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHH
Q 000050 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2622)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~ 1598 (2622)
+++++|++++.+... ...+..++..+.+++.+.++++...|+.
T Consensus 520 ~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp HHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999998876310 1122334555566666666778888888
Q ss_pred HHHHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhhhcCC
Q 000050 1599 IVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNS 1671 (2622)
Q Consensus 1599 ~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~-~~~ll~~Ll~~L~~~~~ 1671 (2622)
++..+|+.... +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. .+.++..|+..+..
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~--- 639 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM--- 639 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH---
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH---
Confidence 88888875331 234468999999999998888788889999999999999887542 33333333322211
Q ss_pred hHHHHHHHHHHHHHHHH--hchhHHH--hHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcC
Q 000050 1672 NVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2622)
Q Consensus 1672 ~~~r~~a~~~L~~i~~~--~g~~~l~--~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~ 1747 (2622)
.+..+... -+...+. +-...+ -..+.++..++..+|..|.||+..+.+.+++..+
T Consensus 640 ---------~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 640 ---------AWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp ---------HHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 11111110 0111110 000111 1235577788899999999999999998876543
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHH
Q 000050 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2622)
Q Consensus 1748 d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~ 1827 (2622)
-.... +...+..-|....+. | ..+++ -.+|.+.++++...+.+.. + .+
T Consensus 699 ~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~----~~ 746 (1023)
T 4hat_C 699 AVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N----LD 746 (1023)
T ss_dssp HHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----HH
T ss_pred HHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----HH
Confidence 21111 111111111110000 0 00000 1145566666666654321 0 01
Q ss_pred HHHHHHHHHhChhhHHHHHHHHH---Hhc--cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcC---CCH
Q 000050 1828 AHGRAIIEVLGRDKRNEVLAALY---MVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSS 1899 (2622)
Q Consensus 1828 ~~~~~l~~~Lg~e~~~~il~~L~---~~~--~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s---~~~ 1899 (2622)
.....++ +.++..+. ... .-..++|-.....++..+.......+..++..++..-+++++. ..+
T Consensus 747 ~~~~~~~--------~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 747 DVVKVLV--------EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HHHHHTH--------HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred HHHHHhH--------HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 1111111 11111111 111 0112344333333343333333333444444444445556653 678
Q ss_pred HHHHHHHHHHHHHHHHhccc-------hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChh--------hHHHhHH
Q 000050 1900 ERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--------QLLSFMD 1964 (2622)
Q Consensus 1900 ~~R~~A~~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~--------~l~~~l~ 1964 (2622)
+.|..-.+.+..+...+... ....++..+.-+++.+..++-..++..+.+++.+.... -...|+.
T Consensus 819 e~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFF 898 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999988876543 23445555666788888888888887777777654321 1123444
Q ss_pred hHHHHHHHHhcCC
Q 000050 1965 ELIPTIRTALCDS 1977 (2622)
Q Consensus 1965 ~ll~~l~~~L~d~ 1977 (2622)
.++..+...+.|.
T Consensus 899 ~~~~~~~~v~td~ 911 (1023)
T 4hat_C 899 IFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCc
Confidence 4444445555554
No 26
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.69 E-value=2.3e-12 Score=183.64 Aligned_cols=757 Identities=11% Similarity=0.098 Sum_probs=414.4
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCC--chHHHHHHHHHHHhcCCCCCCC
Q 000050 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDRYGYDFGTD 1131 (2622)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~w~~~~~~~~~~ 1131 (2622)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+. ..+. +..++-.|....+..=..++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF--SEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35666777666777 688999999998876421 11122222222 1222 5666666654433210023322
Q ss_pred --------h-HhHHHHhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000050 1132 --------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2622)
Q Consensus 1132 --------~-~~Ll~~l~-----~~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2622)
+ ..++..+. .....+|.+.+.+++.++. .||+.|+..+..+.+..... +.-..-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 2 44555443 2457899999999999864 68888888888887765321 01011122
Q ss_pred HHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHhcCCCCChhhhhh
Q 000050 1197 IALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2622)
Q Consensus 1197 ~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~-~~~~~llp~~~~~l~~~~~~~~~~~~ 1275 (2622)
....+..+.+.+.+.... . +....-|..- ....+....- ...+..+.++..+... ..+.
T Consensus 149 ~LriL~~i~EEv~~~~~~----------~-~~~~~~r~~~---lkd~m~~~~~~~i~~~~~~iL~~~~~~------~~~~ 208 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVL----------K-TDVQIQKDNL---VKDAIRANDMSDIVSFVYEMMLAYSNA------KNYG 208 (980)
T ss_dssp HHHHHHHHHHHHCCCCSC----------C-CHHHHHHHHH---HHHHHHHHTHHHHHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHhHHHHHhcccc----------c-CHHHHhhhHH---HHHHHHhccHHHHHHHHHHHHHHHhcc------CCHH
Confidence 233333333333221100 0 0000112111 0111111100 0122223333333321 1223
Q ss_pred hhhHHHHHHHHHhhhhccCCcch---HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch--HHHHHHH--HHHH--
Q 000050 1276 VREGVVIFTGALAKHLAKDDPKV---HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRL--LDQL-- 1346 (2622)
Q Consensus 1276 vr~~~~~~~~~la~~l~~~~~~v---~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~--~~~i~~L--l~~L-- 1346 (2622)
++..+ +..+..++.-.+... ..+++.+...+.+ +++|.++++||..++....+.. ..++..+ .+.+
T Consensus 209 l~~~~---L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~ 283 (980)
T 3ibv_A 209 TVGLC---LQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK 283 (980)
T ss_dssp HHHHH---HHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHH---HHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence 34344 444444443222211 4677888888876 7999999999998886643311 1222221 1111
Q ss_pred -hc-CCChHHHHHHHHHHHHHHhh---h--Ccc--------c--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000050 1347 -MK-SDKYGERRGAAFGLAGVVKG---F--GIS--------S--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2622)
Q Consensus 1347 -~~-~~~~~~r~~Aa~~L~~l~~~---l--g~~--------~--l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~ 1409 (2622)
.. .+|.+.+++-+..+..+... + .+. . -.-..+++.+..+..++ +..+-..++..+..+.+.
T Consensus 284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~ 362 (980)
T 3ibv_A 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVS 362 (980)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHH
Confidence 11 34444444333333222211 0 110 0 00125677777777776 455544444444444332
Q ss_pred h---------cccchhHHHHHHHHHHHHcCCC-----------C-----HHHHHHHHHHHHHHHHhhcHHhH-H----hh
Q 000050 1410 L---------GRLFEPYVIQMLPLLLVAFSDQ-----------V-----VAVREAAECAARAMMSQLSAQGV-K----LV 1459 (2622)
Q Consensus 1410 ~---------~~~~~~~v~~ilp~ll~~l~D~-----------~-----~~VR~aa~~al~~i~~~l~~~~v-~----~i 1459 (2622)
. ...+.+++.++++.++..+.-+ + ...|+... .+..++..+.+..+ . .+
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 363 LRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 1 2345678888888888876421 1 13566555 55555555555543 3 33
Q ss_pred HHHHHhhcc---CCChhhHHHHHHHHHHHHhhCchhh------hhhhhhhHHHHhhhhc-----CCCHHHHHHHHHHHHH
Q 000050 1460 LPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1460 lp~Ll~~L~---~~~w~~r~~a~~~L~~la~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~ 1525 (2622)
.+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|+.||..+++++++
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 343434453 4579999999999999999876522 2567888888888866 8999999999999999
Q ss_pred HhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHh--hhcCCCHHHHHHHHHHHHHh
Q 000050 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1526 l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~--~l~d~~~~vr~~a~~~l~~l 1603 (2622)
.++.+... | ..+..+++.+.. ++.+.+.++|..|+.++.++
T Consensus 522 ys~~~~~~---------------~----------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f 564 (980)
T 3ibv_A 522 YASFFDYE---------------S----------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRF 564 (980)
T ss_dssp TGGGGGTC---------------C----------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHH
T ss_pred HHHHHhcC---------------c----------------------hhHHHHHHHHhccccccCCChhHHHHHHHHHHHH
Confidence 99887521 0 112233444444 66666778899999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCC--C----Cch
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE--E----NFP 1656 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~vR~~a~~aL~~L~~~~g~--~----~~~ 1656 (2622)
|+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+. + ++.
T Consensus 565 ~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~ 642 (980)
T 3ibv_A 565 VKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD 642 (980)
T ss_dssp HHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 98753 46889999999988887762 1 012466789999999987663 1 455
Q ss_pred hhHHHHHHHhh----hcCCh-HHH---HHHHHHHHHHHHHhch---------hHHHhHhHHHHHhcc--CCChhhHHHHH
Q 000050 1657 DLVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYL 1717 (2622)
Q Consensus 1657 ~ll~~Ll~~L~----~~~~~-~~r---~~a~~~L~~i~~~~g~---------~~l~~llp~l~~~l~--~~~~~vR~~al 1717 (2622)
.+++.+++.+. ..... ..+ .....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.+.
T Consensus 643 ~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~ 722 (980)
T 3ibv_A 643 SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVR 722 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 66655554443 22111 111 1345567888776631 234566666666665 46789999999
Q ss_pred HHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhch---hhhhHHHHhh----ccCCC---
Q 000050 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS---LPLLLPAVED----GIFND--- 1787 (2622)
Q Consensus 1718 ~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~---i~~llp~l~~----~l~d~--- 1787 (2622)
.+|..+..++|.++.|+++.++..++...+-.. . ...+..+..++..|+.+. ++.+++.+.. .+...
T Consensus 723 ~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e--~-~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~ 799 (980)
T 3ibv_A 723 FTSGRIINVVGPDMLPKVPQLISILLNSIDMNE--L-VDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQG 799 (980)
T ss_dssp HHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT--H-HHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999996544221 1 235677778888887662 2233333322 11110
Q ss_pred --c----hHHHHHHHHHHHHHHHH-hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccC-CCHH
Q 000050 1788 --N----WRIRQSSVELLGDLLFK-VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLS 1859 (2622)
Q Consensus 1788 --~----~rvR~~a~~ll~~ll~~-~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D-~~~~ 1859 (2622)
. ..++.+-+..+..++.. +++ . +...-+...++.++..++.+-.+ .+..
T Consensus 800 td~~r~~~~l~r~~~~fl~~i~~~~~~~----v-------------------~~s~~n~~~l~~~l~~l~~~a~~~~d~~ 856 (980)
T 3ibv_A 800 TDDAVKQNDLRKSYISFILQLLNKGFGS----I-------------------LFTEENQVYFDPLINSILHFANLVGEPA 856 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCTG----G-------------------GGSHHHHTTHHHHHHHHHHHC-----CH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCchh----h-------------------hcCCcchHHHHHHHHHHHHHhccCCChH
Confidence 0 01233333333333321 000 0 00000112445667767655433 4567
Q ss_pred HHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHHHHhcCCCHHHHH--------HHHHHHHHHHHHhccch
Q 000050 1860 VRQAALHVWKTIVANTP-----KTLKEIMPVLMNTLISSLASSSSERRQ--------VAGRALGELVRKLGERV 1920 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p-----~~l~~~l~~ll~~L~~~L~s~~~~~R~--------~A~~~L~~lv~~~~~~~ 1920 (2622)
+++.|+.++..++...+ ..|.+++=.++|.......+++.+.+- ..+.++..+..+.|+.+
T Consensus 857 ~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~ 930 (980)
T 3ibv_A 857 TQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIY 930 (980)
T ss_dssp HHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 89999999999988542 125554433777777776665544332 23334444445555543
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.63 E-value=8.4e-14 Score=195.90 Aligned_cols=540 Identities=12% Similarity=0.072 Sum_probs=327.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhH
Q 000050 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2622)
Q Consensus 1887 l~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~l 1966 (2622)
++.++..|.+++...|..+.+.+...-+ ..+....+|.|...+.++++.+|..++.+|+.+.............+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5567777888888888888877764422 1233566777777778889999999999999986532211111112467
Q ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCh-h--hhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhh
Q 000050 1967 IPTIRTALCD-SILEVRESAGLAFSTLFKSAGM-Q--AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2622)
Q Consensus 1967 l~~l~~~L~d-~d~~VR~~A~~al~~l~~~~g~-~--~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip 2042 (2622)
++.+...|.+ .++++|..|+.+|..+...... . .-...+|.|++.|++++..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~------------------------ 249 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDS------------------------ 249 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHH------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHH------------------------
Confidence 8888888864 4899999999999887532111 0 1124566777766654321
Q ss_pred hhhcCCCchHHHHHHHHHHHHhCCChhhh-HhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChh--c--HHHHHHHH
Q 000050 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFH-LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--G--VESLVSEL 2117 (2622)
Q Consensus 2043 ~L~~~~~~~~~~~aL~sLa~~~g~~l~~~-l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~--~--l~~ll~~L 2117 (2622)
+...++.+|..|+......-... -..++|.|+..+.+.+..++..+..++..+.....+. . -...++.|
T Consensus 250 ------v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 250 ------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323 (780)
T ss_dssp ------HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 01123344444443222111111 1467899999998888889988888887665321110 0 01235566
Q ss_pred HhhcCCCChh-HHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHH
Q 000050 2118 LKGVGDNQAS-IRRSSAYLIGYFYKNSKLYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2622)
Q Consensus 2118 l~~l~d~~~~-vR~~A~~~L~~l~~~~~~~l~~~-~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2622)
+..+++.+.. .+..++.++..++.... ..... -...++.|+.++.+.+..++..+..+|..++....+.
T Consensus 324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------- 394 (780)
T 2z6g_A 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------- 394 (780)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--------
Confidence 6666665544 45577888888875321 11111 1245788899999989999999999988887543210
Q ss_pred HHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh-hhhhH
Q 000050 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITG 2274 (2622)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v-~~i~~ 2274 (2622)
.....++|.+++.+.+.++++|..|+.+|+.++.... +.....+ ...++
T Consensus 395 -----------------------------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 395 -----------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIE 444 (780)
T ss_dssp -----------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHH
T ss_pred -----------------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHH
Confidence 1234578888888888999999999999999986532 2222221 34567
Q ss_pred HHHHhhcCCC-CHhhHHHHHHHHHHHHHhcCCC--ccCc--hHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhcccCh-
Q 000050 2275 PLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIA--LKPF--LPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRV- 2347 (2622)
Q Consensus 2275 ~Li~~l~~~~-~~~vk~~al~~L~~L~~~~~~~--l~p~--l~~L~~~llk~L~d~~-~~vR~~Aa~aLg~L~~~~~~~- 2347 (2622)
+|++.+.+.. ..+++..++.+|+.|....+.. .+.. .....+.+++.|.+++ +.+|..|+.+|+.++......
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888886532 3489999999999885422210 0000 0123566778888875 599999999999996522111
Q ss_pred ----hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhc
Q 000050 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2622)
Q Consensus 2348 ----~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2622)
...++.|+..+.+.+..+|..+.+++.. + .... ...+.++..++.+|+.++..
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n--q-------------------~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--Q-------------------QFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC---------------------------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhcccc--c-------------------hhhcccChHHHHHHHHHHHHHHhcC-
Confidence 1345666666655444444443333222 0 0011 12356777888888887631
Q ss_pred CchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2423 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2423 ~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
. .. +. .+... .+++.|++.+.+.++.++.+|..+++.+...
T Consensus 583 -~-~~------------------~~--------~l~~~-----------~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 583 -I-HN------------------RI--------VIRGL-----------NTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp -H-HH------------------HH--------HHHHT-----------CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred -h-hh------------------HH--------HHHHC-----------CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 1 10 00 00000 1244566677788899999999999988643
Q ss_pred hhhcCCCCchhhHh--HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh-HHHHHHh
Q 000050 2503 QIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL-FGPALAE 2564 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~--~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~-l~p~l~~ 2564 (2622)
.. ....+.+ .++.+...+++++.+||+.|+.+|..+++..|..++..+.. +++.+|.
T Consensus 624 ~~-----~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 624 KE-----AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683 (780)
T ss_dssp HH-----HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC--
T ss_pred HH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHh
Confidence 21 1112222 57788888899999999999999999999998777665522 4454443
No 28
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.62 E-value=1.5e-11 Score=180.27 Aligned_cols=702 Identities=11% Similarity=0.087 Sum_probs=406.4
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh----CCCCchhhHHHHH
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM----GEENFPDLVSWLL 1663 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~----g~~~~~~ll~~Ll 1663 (2622)
.+...|+.|.+.+..+-.. + + ++..+...+.. +.++.+|..|+..|...+... +++....+-..++
T Consensus 28 p~~~~r~~Ae~~L~~~~~~---p-~---~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll 97 (1049)
T 3m1i_C 28 GSGVQQKQAQEILTKFQDN---P-D---AWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVV 97 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHS---T-T---GGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC---c-h---HHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHH
Confidence 3456888999999877542 1 2 22223333222 567899999999999988642 2222333444455
Q ss_pred HHhhhcC--------ChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhC-------
Q 000050 1664 DALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------- 1728 (2622)
Q Consensus 1664 ~~L~~~~--------~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g------- 1728 (2622)
..+.+.. ...+|...++.++.++.....+.|+++++.+++.++ .++..++.++.++..++....
T Consensus 98 ~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~ 176 (1049)
T 3m1i_C 98 GMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQM 176 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTS
T ss_pred HHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 5544321 245788888999999888767778899999998886 566678888888888885443
Q ss_pred ---------cchhhhHHhHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhch--hhhhHHHHhhccCCCchHHHHHHH
Q 000050 1729 ---------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2622)
Q Consensus 1729 ---------~~f~p~l~~ii~~ll~~L~d-~~~~VR~~al~al~~lv~~~~~~~--i~~llp~l~~~l~d~~~rvR~~a~ 1796 (2622)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..++
T Consensus 177 ~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~ 255 (1049)
T 3m1i_C 177 TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITL 255 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHH
Confidence 23556677777777777754 346788888888877654332111 0123333331111 1455667777
Q ss_pred HHHHHHHHHhcCCc-----cc---------------c---------cccCCCCCCcccHHHHHHHHH-------HHhC--
Q 000050 1797 ELLGDLLFKVAGTS-----GK---------------A---------LLEGGSDDEGASTEAHGRAII-------EVLG-- 1838 (2622)
Q Consensus 1797 ~ll~~ll~~~~~~~-----~~---------------~---------~~~~~~dde~~~~~~~~~~l~-------~~Lg-- 1838 (2622)
+++..++..-.+.. .+ . .....++++.+-.....+.+. +.+.
T Consensus 256 ~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 335 (1049)
T 3m1i_C 256 KCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESD 335 (1049)
T ss_dssp HHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77666654310000 00 0 000011111111111111111 1110
Q ss_pred ---hhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh------ChhhHHHHHHHHHHHHHHHhcCC------------
Q 000050 1839 ---RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN------TPKTLKEIMPVLMNTLISSLASS------------ 1897 (2622)
Q Consensus 1839 ---~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~------~p~~l~~~l~~ll~~L~~~L~s~------------ 1897 (2622)
.+....++..+..+....+..|+..+++.|..++.. ....+.++++.+++.++..+.-+
T Consensus 336 ~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 336 ESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 112233455555544555889999999999999872 23456788999999988877421
Q ss_pred -------C---HHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC--CCChhhHHhHHHHHHHHHHhhChhhHHHhHHh
Q 000050 1898 -------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2622)
Q Consensus 1898 -------~---~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ 1965 (2622)
+ +..|..+..+|..++...+..+++.+.+.+.+.+. ..+|..|.+++.++|.+...+....-.++++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~ 495 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT 495 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHH
Confidence 0 13366777888888877666678888888887775 36789999999999987665544333345777
Q ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhcccccc
Q 000050 1966 LIPTIRTALC-----DSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2622)
Q Consensus 1966 ll~~l~~~L~-----d~d~~VR~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp 2038 (2622)
+++.+..... |+.+.+|..++.+++++.+.+. +..+..+++.+++.+.++..
T Consensus 496 v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~--------------------- 554 (1049)
T 3m1i_C 496 VIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHE--------------------- 554 (1049)
T ss_dssp HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCH---------------------
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH---------------------
Confidence 7777766432 3566777778888887765433 23455566666665544321
Q ss_pred chhhhhhcCCCchHHHHHHHHHHHHhCCChh--------hhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccCh-h-
Q 000050 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E- 2108 (2622)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~--------~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~-~- 2108 (2622)
++...++.++..+++.++..+. ||++.++..+...+..-+.+......++++.++...+. +
T Consensus 555 ---------~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 555 ---------GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1222355566666665555443 99999999988888766666677788899998877652 2
Q ss_pred ---cHHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHH
Q 000050 2109 ---GVESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2622)
Q Consensus 2109 ---~l~~ll~~Ll~~l~--------d----~~~~-vR~--~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~ 2170 (2622)
.+..+++.+...+. + .++. .+. ..+.++..++...+..+.++.+.++..++..+.... ...
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~~~ 704 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-SMI 704 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 24444444332221 0 0222 222 334566677777777888888777766654442110 001
Q ss_pred HHHHHHHHHHHhhcC-ccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHH-HH
Q 000050 2171 AAAWEALSRVVASVP-KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR-EQ 2248 (2622)
Q Consensus 2171 ~~a~~aL~~l~~~~~-~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r-~~ 2248 (2622)
+.+..+-+......+ ...+..+.+.+.+.+...... .. .+... ....+.+++..++..+.+.....| ..
T Consensus 705 ~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~------~~--~l~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~ 775 (1049)
T 3m1i_C 705 SAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK------AR--NLDDV-VKVLVEPLLNAVLEDYMNNVPDARDAE 775 (1049)
T ss_dssp HHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH------CS--CHHHH-HHHTHHHHHHHHHHHHHHSCGGGCCTH
T ss_pred HHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHh------CC--CHHHH-HHHHHHHHHHHHHHHHHhCCcccccHH
Confidence 111100000000000 011222222222222222111 00 00000 001122233333333322212111 34
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHh----hcC--CCCHhhHHHHHHHHHHHHHhcCCCccCc----hHHHHHHH
Q 000050 2249 AALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF----LPQLQTTF 2318 (2622)
Q Consensus 2249 aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~----l~~L~~~l 2318 (2622)
++.+++.++...| +.+.|++..+...+... +.+ ...++++...+..++.++.+++..+.+. +..+....
T Consensus 776 ~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~ 854 (1049)
T 3m1i_C 776 VLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854 (1049)
T ss_dssp HHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHH
Confidence 7788999998887 67888888887666654 322 3468899999999999999887655331 34455566
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2319 IKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2319 lk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
+.++..+++.+...+...+-.+..
T Consensus 855 ~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 855 CWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHH
Confidence 678888888988888888887744
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.62 E-value=1.3e-13 Score=183.47 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=266.8
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHH
Q 000050 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2622)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~ 1580 (2622)
+|.+++.++++++.+|..|+.+|..+.....++.+..++ . -..++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 677888888999999999999999886532222211100 0 0035667
Q ss_pred HHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000050 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2622)
Q Consensus 1581 L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--~-- 1654 (2622)
+.+.+.+. ++.+|..++.++.+++.. .++....+ -..++|.+.+++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777776 788999999999998762 21111111 2458999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc----hhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g----~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
-...+|.++..+.++.+..+|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865567788899999999886431 2234678899999999999999999999999887643221
Q ss_pred hhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000050 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2622)
Q Consensus 1731 f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~ 1809 (2622)
..... ..++|.++..+.+.++.+|..++.++..+....+.
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 11111 22555555555555555555555544443211000
Q ss_pred cccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHH-HHHHH
Q 000050 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2622)
Q Consensus 1810 ~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l-~~ll~ 1888 (2622)
..+.+.+ ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000110 01344444456677889999999999999876665555444 36778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-----
Q 000050 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2622)
Q Consensus 1889 ~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~----- 1958 (2622)
.++..+.+.++.+|..|+.+|+.++....+. .-..++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888889999999999999998763322 124688899999999999999999999999876433211
Q ss_pred -HHHhHHhH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
..+|...+ ++.+...+.+++.++++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12333333 566777777788889998888777664
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.59 E-value=2.6e-13 Score=180.61 Aligned_cols=344 Identities=13% Similarity=0.076 Sum_probs=253.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhHHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHh
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQG 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~-~~~~~~~~v~--~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~ 1455 (2622)
++.+.+.+++. ++..|..|+.++..+... ........+. .++|.++..+.++ ++.+|..+..++..++..-+...
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55566677766 789999999999887652 2222334444 5899999999988 89999999999998876432221
Q ss_pred ---H-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhh
Q 000050 1456 ---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 ---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2622)
+ ...+|.+++.+.++++.+|..++.+|+.++...+......+ ..++|.+..++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 46899999999999999999999999999987654322222 4688999999985 7899999999999999965
Q ss_pred c-CC---hhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccc--cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 000050 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2622)
Q Consensus 1530 ~-~~---~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~--~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~ 1602 (2622)
. +. ..+..++|.|.+.+.+++..++ .++..+....... ....-....++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 21 2347889999999988887776 4555554311100 00001113478889999999999999999999999
Q ss_pred hhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHHHHhhhcCChHHHHH
Q 000050 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2622)
Q Consensus 1603 l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---~~-~~ll~~Ll~~L~~~~~~~~r~~ 1677 (2622)
++.. .+....... ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.++..+.+.. ..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence 9863 211111112 258899999999999999999999999998632211 11 367888888887654 568889
Q ss_pred HHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhh
Q 000050 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2622)
Q Consensus 1678 a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~ 1727 (2622)
++.+++.++.....+.. ..++|.+++.+.+.++.+|..++.++..++...
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876433322 357899999999999999999999999988754
No 31
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.59 E-value=6.4e-11 Score=167.03 Aligned_cols=761 Identities=9% Similarity=0.069 Sum_probs=400.8
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------
Q 000050 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2622)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2622)
+.++.+.++-+.+++++..+.+|++..|.+|++.|.+.... |........+ -..+.+..+|-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHH
Confidence 44555566678899999999999999999999999876421 2222222222 23344566666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHHhc----C-----CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000050 1119 DIWDRYGYDFGTDY-SGLFKALS----H-----SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2622)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~----~-----~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2622)
..|.....+-...+ ..+++.+. + +++.++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 45765332222223 55555443 1 367899999999999975 5888888888888775421
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCCC
Q 000050 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2622)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~~ 1267 (2622)
+-..+......|..+++.+.+-. ..-+ ...-|....++. . ...+.+++.+..++...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~---------~~~l---~~~r~~~lk~~L----~----~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFS---------SGQI---TQVKAKHLKDSM----C----NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSH---------HHHB---CHHHHHHHHHHH----H----HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcc---------cccc---cHHHHHHHHHHH----H----HHHHHHHHHHHHHhccc-
Confidence 11345556666666665432110 0001 011122222221 1 13667777777777642
Q ss_pred CChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHH-HHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHH
Q 000050 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL 1346 (2622)
Q Consensus 1268 ~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L-~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L 1346 (2622)
. ...+...+...++....+++-+.-.-..+++.+ ...+ +++++|.++++||..++..-.+...+.+..+++.+
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 123334444555555554422100002245555 4555 35789999999999888653222223333333221
Q ss_pred h--------cCCChHH--------HHHHHHHHHHHHhhhCccch---------hh--hcHHHHHHHHHhCCCCHHHHHHH
Q 000050 1347 M--------KSDKYGE--------RRGAAFGLAGVVKGFGISSL---------KK--YGIAATLREGLADRNSAKRREGA 1399 (2622)
Q Consensus 1347 ~--------~~~~~~~--------r~~Aa~~L~~l~~~lg~~~l---------~~--~~i~~~L~~~l~~~~~~~~R~~a 1399 (2622)
. ...+... -..-..+++.+....|.... .. ...+..+..+.... +...-.-.
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 0101100 01223334443333221111 00 01233344444443 34333333
Q ss_pred HHHHHHHHHHhc-------------------------ccchhHHHHHHHHHHHHcCCCCH--------------------
Q 000050 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2622)
Q Consensus 1400 l~al~~La~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2622)
+.....+.+.+- ..+.|++.++...++..+.-|++
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 333333333211 12566777777777776653211
Q ss_pred --HHHHHHHHHHHHHHHhhcH-HhHHhhHHHHHhhccC--CChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhh
Q 000050 1435 --AVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2622)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~~-~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L 1508 (2622)
.+++..-+++..+. ++.+ +....+++.+-+.++. .+|....+.|.++|+|+.+... .-...+|.+++.|+.+.
T Consensus 452 ~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 13333334443332 3333 3345555655555443 4699999999999999876553 45678999999999888
Q ss_pred cCC-----CHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1509 TDT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1509 ~D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
..+ .+.|+...+..+|+..+.+.+ + .+..++. .+
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~---------------------------------------~L 571 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN---------------------------------------KL 571 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH---------------------------------------HH
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH---------------------------------------HH
Confidence 654 456777778899998877642 1 2233333 34
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhhhcCC------CCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-
Q 000050 1582 HRGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN- 1654 (2622)
Q Consensus 1582 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~- 1654 (2622)
.+.+.+.++.++.+|+.++..+|..... +.+..||++.++..+.....+=.++-...-..++|.++...|.+.
T Consensus 572 ~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~ 651 (1073)
T 3gjx_A 572 FEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTV 651 (1073)
T ss_dssp HHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcch
Confidence 4445555567777788888777765432 123568999999988888887778888899999999999887642
Q ss_pred chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh--chhHHHhHhHHHHHhccCCChhhHH--HHHHHHHHhhhhhCcc
Q 000050 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVRD--GYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1655 ~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~--g~~~l~~llp~l~~~l~~~~~~vR~--~al~~l~~L~~~~g~~ 1730 (2622)
.+.++..++..... .+..+.... +.+.+ .+++ .++. ..+.+...++..+|..
T Consensus 652 ~~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~~~-----------~d~~-~i~~l~~il~~n~~v~~~~g~~ 707 (1073)
T 3gjx_A 652 QEHLIEKYMLLPNQ------------VWDSIIQQATKNVDIL-----------KDPE-TVKQLGSILKTNVRACKAVGHP 707 (1073)
T ss_dssp HHHHHHHHTHHHHH------------HHHHHHHHHHHCGGGG-----------GCHH-HHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHhhcCchhc-----------cChH-HHHHHHHHHhhhHHHHhhcchh
Confidence 23333333322110 111121110 11110 0100 0111 2345677888999999
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCc
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~ 1810 (2622)
|.|++..+.+-++..-+ ..-..+...+..-|....+. ...+++ -.+|.+.+.++...+.+
T Consensus 708 f~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~----- 767 (1073)
T 3gjx_A 708 FVIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR----- 767 (1073)
T ss_dssp GHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc-----
Confidence 99999998887664321 11111111111111110000 000110 01455555666555421
Q ss_pred ccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHh-c-cCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 000050 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-R-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2622)
Q Consensus 1811 ~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~-~-~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~ 1888 (2622)
.+| .+. +.+.+-+.-.+.++.. |.. . .-..++|-.....++..+....+..+..++..++.
T Consensus 768 --------~~~----~~~----v~~~~i~pl~~~vl~d-Y~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~ 830 (1073)
T 3gjx_A 768 --------SND----PQM----VAENFVPPLLDAVLID-YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 830 (1073)
T ss_dssp --------CSC----HHH----HHHHTSHHHHHHTHHH-HHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHH
T ss_pred --------CCC----HHH----HHHHhHHHHHHHHHHH-HhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 011 111 1111111111111111 111 0 01233444444444444444444444555555555
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHHHHHHHhccch-------hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhh
Q 000050 1889 TLISSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2622)
Q Consensus 1889 ~L~~~L~---s~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~ 1954 (2622)
.-+++++ +..++.|..-.+.+..+...+.... ...++..+.-+++++.+++-..+...+.+++.+.
T Consensus 831 ~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~ 906 (1073)
T 3gjx_A 831 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 906 (1073)
T ss_dssp HHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHh
Confidence 5566665 4689999999999999998865542 2345555566677777777766666666666543
No 32
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.58 E-value=6.5e-10 Score=158.49 Aligned_cols=810 Identities=12% Similarity=0.097 Sum_probs=429.6
Q ss_pred HHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCC
Q 000050 1577 LVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGE 1652 (2622)
Q Consensus 1577 i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~vR~~a~~aL~~L~~~~g~ 1652 (2622)
+...+...+.. .++..|+.|.+.+..+-+. . .........+.++ ++.+|-.|+..|...+..+++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSS-S----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-T----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-h----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 34444333332 3688999999999887652 1 1334444555543 689999999999988886666
Q ss_pred C----CchhhHHHHHHHhhh----cCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCCh-hhHHHHHHHHHHh
Q 000050 1653 E----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKYL 1723 (2622)
Q Consensus 1653 ~----~~~~ll~~Ll~~L~~----~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~-~vR~~al~~l~~L 1723 (2622)
+ ....+-..++..+.. ..+..+|...+..++.++....++.|+.+++.+++.++..+. ..-...+..+..+
T Consensus 77 e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 77 ESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 5 445555556555543 234557888888888888877777777777777776543322 1111122222222
Q ss_pred hhhhCcchhhhHHhHHHHHHhhcCCCCh-HHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1724 PRSLGVQFQNYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1724 ~~~~g~~f~p~l~~ii~~ll~~L~d~~~-~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
...+... .+....+ .-|...+ +.. +|... +..+
T Consensus 157 ~EEv~~~--------------~~~~~~~~~~r~~~l---kd~--------------------------m~~~~---~~~i 190 (980)
T 3ibv_A 157 GDEIADS--------------LVLKTDVQIQKDNLV---KDA--------------------------IRAND---MSDI 190 (980)
T ss_dssp HHHHCCC--------------CSCCCHHHHHHHHHH---HHH--------------------------HHHHT---HHHH
T ss_pred HHHHHhc--------------ccccCHHHHhhhHHH---HHH--------------------------HHhcc---HHHH
Confidence 1111110 0000000 0000000 000 00000 0000
Q ss_pred HHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHH
Q 000050 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI 1882 (2622)
Q Consensus 1803 l~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~ 1882 (2622)
. +.++..+..+....+..++..++++++..+.-.|-.+--
T Consensus 191 -------------------------------~--------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~- 230 (980)
T 3ibv_A 191 -------------------------------V--------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV- 230 (980)
T ss_dssp -------------------------------H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH-
T ss_pred -------------------------------H--------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh-
Confidence 0 001111111112245678889999999888754432211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhH------HHHHhhhcC-CCChhhHHhHHHHHHHHHHh-
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSI------IPILSRGLK-DPSASRRQGVCIGLSEVMAS- 1953 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~l------lp~L~~~L~-d~~~~vR~~a~~~L~~li~~- 1953 (2622)
-+.+++.+.+.+.+ +..|..|+.||.+++.+.... ..-.+ .+.+..... +.|.+...+.|..+.++...
T Consensus 231 ~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l 308 (980)
T 3ibv_A 231 NEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVEL 308 (980)
T ss_dssp CHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 15677888888865 789999999999999875331 11111 122222222 45677665555443322211
Q ss_pred --h--Ch--------hhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh---C-----hhhhhhhHHHHHHhc-
Q 000050 1954 --A--GK--------SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA---G-----MQAIDEIVPTLLHAL- 2012 (2622)
Q Consensus 1954 --~--~~--------~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~---g-----~~~~~~ilp~Ll~~L- 2012 (2622)
. .+ ....+++..+++.+..++.+++.+|-..+...+..+.... . .....++++.|++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li 388 (980)
T 3ibv_A 309 VAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAII 388 (980)
T ss_dssp HHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHH
Confidence 1 11 1233667889999999999988888877776666554321 1 122334444444333
Q ss_pred ---ccCC----------chhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCC-hhhhHh-hhHH
Q 000050 2013 ---EDDQ----------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFHLG-TILP 2077 (2622)
Q Consensus 2013 ---~~~~----------~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~-l~~~l~-~il~ 2077 (2622)
+-++ +.+.....++.-+ ..+-....+.|.+ +..++- .+.+
T Consensus 389 ~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l-------------------------~~l~d~~~~l~~~~~l~~~~~~i~~ 443 (980)
T 3ibv_A 389 KKMKYDESQEWDDDPDSEEEAEFQEMRKKL-------------------------KIFQDTINSIDSSLFSSYMYSAITS 443 (980)
T ss_dssp HTTSCCTTCCCCCCSSSSTHHHHHHHHHHH-------------------------HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHccCCCccccccccchhHHHHHHHHHHHH-------------------------HHHHHHHHhcChHHHHHHHHHHHHH
Confidence 2111 1111111121111 1121122222322 223222 3333
Q ss_pred HHHHhcC---CCCHHHHHHHHHHHHHhhhccCh---------hcHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHHH
Q 000050 2078 ALLSAMG---DDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKGVG-----DNQASIRRSSAYLIGYFY 2140 (2622)
Q Consensus 2078 ~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll~~l~-----d~~~~vR~~A~~~L~~l~ 2140 (2622)
.+-+.+. +.++..++.++.++..+...+.. +.++.+++.+...+. ++.+.+|..++.+++.+.
T Consensus 444 ~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys 523 (980)
T 3ibv_A 444 SLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYA 523 (980)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTG
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3334442 24578899999999988876532 234455555555543 677999999999999887
Q ss_pred hhccccccccHHHHHHHHHH--HhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCcccc
Q 000050 2141 KNSKLYLVDEAPNMISTLIV--LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2622)
Q Consensus 2141 ~~~~~~l~~~~~~il~~L~~--~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2622)
+-... -..+++.+++.++. .+.+++..|+.+|+.++.++++.+++...+ +++.+.+.+...-.. . ..
T Consensus 524 ~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~-~~~~il~~l~~lL~~------~---~~ 592 (980)
T 3ibv_A 524 SFFDY-ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN-YTESSLAMLGDLLNI------S---VS 592 (980)
T ss_dssp GGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS-SHHHHHHHTTGGGCC------C---CC
T ss_pred HHHhc-CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHhhcC------c---CC
Confidence 64422 23678888888888 777889999999999999999988765433 333333333221000 0 00
Q ss_pred ccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHhhc----CCCCH-hhHH-
Q 000050 2219 PGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIG----DRFPW-QVKS- 2290 (2622)
Q Consensus 2219 ~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~--~~~l~p~v~~i~~~Li~~l~----~~~~~-~vk~- 2290 (2622)
+.- .+++....+..+ ..++..+.+....+++|.++...+ ++.-..++..+.+|++..+. ..... +-+.
T Consensus 593 ~~~-~~~~~~~~~~~~---~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 593 PVT-DMDAPVPTLNSS---IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCC-C--CSSCCHHHH---HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred CCC-cccccccchhhh---cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence 000 000111111111 112234566778899999997754 45567788888888776543 21111 1111
Q ss_pred --HHHHHHHHHHHhcCCC---ccC---chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHh-cccChhhHHHHHHHhhh
Q 000050 2291 --AILSTLSIIIRKGGIA---LKP---FLPQLQTTFIKCLQD--STRTVRSSAALALGKLSA-LSTRVDPLVGDLLSSLQ 2359 (2622)
Q Consensus 2291 --~al~~L~~L~~~~~~~---l~p---~l~~L~~~llk~L~d--~~~~vR~~Aa~aLg~L~~-~~~~~~~ll~~Ll~~l~ 2359 (2622)
..+.+++.+++..+.. ..| .+.+..+.++..+.. .+..||.++..++.+++. +++.+.|++|.+++.+-
T Consensus 669 i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 4566677777765321 122 233566677777763 489999999999999954 46667778887777663
Q ss_pred c-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Q 000050 2360 V-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVL----KDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2622)
Q Consensus 2360 ~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L----~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2622)
. -+..--...+..+..++...|..+ .+....++..+ ...+..+.. +.+.+.. ...
T Consensus 749 ~~~~~~e~~~fL~l~~qli~~f~~~~-~~~l~~ll~~l~~~if~~l~~~~~-----------------~td~~r~--~~~ 808 (980)
T 3ibv_A 749 NSIDMNELVDVLSFISQLIHIYKDNM-MEITNRMLPTLLMRIFSSLSAAPQ-----------------GTDDAVK--QND 808 (980)
T ss_dssp HHCCTTTHHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTC---------------------CCHHHH--HHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC-----------------CcHHHHH--HHH
Confidence 2 233335567899999999998875 33333333332 223322210 0011110 000
Q ss_pred HhhcCCCCchhhHhHHHHHHHHHhhCCcccc-C---ChhHHHHHHHHHhhhcc-CChhHHHhHHHHHHHHHhhhhh-c-C
Q 000050 2435 LNLASSPSWAARHGSVLVFATFLRHNPSAIS-M---SPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQ-S-G 2507 (2622)
Q Consensus 2435 l~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~-~---~~~~~~i~~~l~~~~~~-~~~~ir~~a~~alg~ll~~~~~-~-~ 2507 (2622)
.++.....+..+++..-..++ . .+..+.++..+.....+ .++..++.|+..+.+++...+. . .
T Consensus 809 ----------l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~ 878 (980)
T 3ibv_A 809 ----------LRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGI 878 (980)
T ss_dssp ----------HHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------
T ss_pred ----------HHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcc
Confidence 122233334445543322332 1 23466777777755444 6789999999999999888643 2 3
Q ss_pred CCCchhhHhHHHHHHhhcCCCCHHHHHH--------HHHHHHHHHhhCchhhhhhH
Q 000050 2508 PANTTVVVDILASVVSALHDDSSEVRRR--------ALSALKSVAKANPSAIMVHV 2555 (2622)
Q Consensus 2508 ~~~~~~l~~~l~~l~~~l~d~s~dvr~~--------a~~~l~~~a~~~~~~v~~~l 2555 (2622)
|++...+-++++.+...+.+++-|.+-+ ....++.+-.+.++....||
T Consensus 879 ~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 879 AGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5566666557777777766666655443 33444444444444444444
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.58 E-value=1.8e-12 Score=182.29 Aligned_cols=506 Identities=11% Similarity=0.057 Sum_probs=324.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh-hhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ 1499 (2622)
-+|.++..+.+++..+|.++...++..-.. .-....+|.++..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 367788888888889998887777644211 112567888888888889999999999999998743322 1112357
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHH
Q 000050 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
+++.|++.|.+ .++.+|..|+.+|..++..-. .. .. +. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~---~~---~~------------------i~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE---GL---LA------------------IF------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH---HH---HH------------------HH------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch---hH---HH------------------HH------------HcCCH
Confidence 88999988875 489999999999999875311 00 00 00 01256
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~---- 1653 (2622)
|.|.+.+.+.+..+|..|+.+|.+++..... ....+. ...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777788888889999999999999875211 111121 468899999999999999999999999887521110
Q ss_pred CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch-hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcc
Q 000050 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2622)
Q Consensus 1654 ~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 1730 (2622)
.-...++.|+..+++......+..++..+..++..-.. ..+ ...++.++..+.+.+..++..++.++..++...+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11256778888887665543333445555555431111 111 346788888888888999999999999998765431
Q ss_pred hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc--h-h-hhhHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000050 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--S-L-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1731 f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~--~-i-~~llp~l~~~l~d-~~~-rvR~~a~~ll~~ll~ 1804 (2622)
.....++|.+.+.+.+.+..+|..|..++..+....... . + ...+|.+.+.+.+ .++ .+|..++.+++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568999999999999999999999998875422110 0 0 1245555555544 233 788888888887621
Q ss_pred HhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHhhChhhHHHHH
Q 000050 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2622)
Q Consensus 1805 ~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~p~~l~~~l 1883 (2622)
...+ .+.....+... ..++.+...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 --------------~~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 --------------RHQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp --------------SSTT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred --------------cCch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 0001 01011112111 12344444444444 58999999999999863322 12222
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhccc---hhhhHHHHHhhhcCCCCh
Q 000050 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2622)
Q Consensus 1884 -~~ll~~L~~~L~s~~----------------------~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2622)
..+++.++..+.+.+ .+++..++.+|+.++...... .-...+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 124455555544322 346667778887765311100 124568888899999999
Q ss_pred hhHHhHHHHHHHHHHhhChhhHHHhH--HhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000050 1938 SRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1938 ~vR~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2622)
+++..++.+|+.+... + .....+ ...++.+..++.+++++||..|..++..+....+
T Consensus 608 ~v~~~a~~aL~~L~~~--~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC--H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999987532 2 222223 2368888899999999999999999999876544
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.56 E-value=1.7e-12 Score=176.36 Aligned_cols=387 Identities=14% Similarity=0.107 Sum_probs=278.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCc---cchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1339 i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~---~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
++.+++.|. +++...|..|+..|..++.+... ..+....+++.|.+++.+..++..|..|+.+++.++.+.+....
T Consensus 76 l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 556666664 44678888899998888765431 12223467888889998874599999999999999875332122
Q ss_pred hHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhc-cCCChhhHHHHHHHHHHHHhhC
Q 000050 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCA 1489 (2622)
Q Consensus 1416 ~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~la~~~ 1489 (2622)
..+. ..+|.++..+.++++.||..|..++..++..-+.. .+ ...+|.++..+ .+.++.++..++.+|+.++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 2222 58999999999999999999999999997643322 11 35789999999 6788999999999999999875
Q ss_pred chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccC
Q 000050 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569 (2622)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~ 1569 (2622)
|.........++|.|..++.+.++.|+..|+++|+.++.... ...+. +.
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~----------------------~~-------- 283 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQA----------------------VI-------- 283 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHH----------------------HH--------
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHH----------------------HH--------
Confidence 544344457889999999999999999999999999985321 10010 00
Q ss_pred ChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Q 000050 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1570 ~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~ 1647 (2622)
-..++|.|...+.+.++.++..|+.++++++.. .+......+ ..+++.|..++.++ ++.+|..|+.+|+.++
T Consensus 284 ----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 284 ----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp ----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred ----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 012466777777777889999999999999863 211111111 35788899999988 9999999999999998
Q ss_pred hhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHHHHHH
Q 000050 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLT 1718 (2622)
Q Consensus 1648 ~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~~al~ 1718 (2622)
....+. .-..++|.|+..+.+. ...+|..++.+|+.++.....+.. ...++.++..+.+.++.++..++.
T Consensus 358 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 358 AGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 632211 1236788888888776 456888999999998876434322 356889999999999999999999
Q ss_pred HHHHhhhhhCc-------chhhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHHHH
Q 000050 1719 LFKYLPRSLGV-------QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2622)
Q Consensus 1719 ~l~~L~~~~g~-------~f~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~~l 1764 (2622)
++..+....+. ...+| +.. .++.+.....+++++++..|...+..+
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999875433 11223 222 355666667777778877776666543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.56 E-value=6.1e-13 Score=180.59 Aligned_cols=383 Identities=13% Similarity=0.093 Sum_probs=283.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccCC-ChhhHHHHHHHHHHHHhhCch
Q 000050 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
....+|.++..+.++++.+|..|..+++.++..-.. ..+ ..++|.+++.|.++ ++.++..++.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 334578888888988999999999999888654211 111 46899999999987 899999999999999986554
Q ss_pred hhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-h-h-H-HhHHHHHHhhcCCCChhHH-HHHHHHHhcc-
Q 000050 1492 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT- 1564 (2622)
Q Consensus 1492 ~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~-i-~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~- 1564 (2622)
..... -..++|.|+.++.++++.||..|+++|+.++..-.. . . + ...+|.|+..+.+++..++ .++.++....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43222 157889999999999999999999999999864211 1 1 1 4678999999988777666 4555554321
Q ss_pred cc-ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000050 1565 FV-NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 1642 (2622)
Q Consensus 1565 ~~-~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~a 1642 (2622)
.. ..........++|.|...+.+.++.++..++.++++++.. .+....... ..+++.+..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 11 2223344567889999999999999999999999999863 211122222 2678999999999999999999999
Q ss_pred HHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh---HH-HhHhHHHHHhccCCChhhHH
Q 000050 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1643 L~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~---~l-~~llp~l~~~l~~~~~~vR~ 1714 (2622)
|+.++...+.. .-..++|.++..+.+. ...+|..++.+|+.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998643211 1136788888888766 4668889999999887532211 11 45788899888889999999
Q ss_pred HHHHHHHHhhhhhCc--chhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhc----------hhh-----h
Q 000050 1715 GYLTLFKYLPRSLGV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1775 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~--~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~----------~i~-----~ 1775 (2622)
.++.+++.++...+. ....++.. ++|.+...+.+.++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999886544 44444433 8999999999999999999999999888654321 111 1
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1776 llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
.++.+.....+.+..++..+...+..++
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3566777778888889888888887763
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-13 Score=164.96 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=170.0
Q ss_pred cCCChHHHHHHHHHHHH-HHhhhCcc---chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hHHHHH
Q 000050 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2622)
Q Consensus 1348 ~~~~~~~r~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~-~~v~~i 1421 (2622)
.+.+|.+|+.|...|.. ++.+.+.- ......+++.+.+.+.++.|..+|..|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 57789999999999999 88663321 112236888999999433489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p---~~l~ 1494 (2622)
+|.++..++|..+.||+++..++..++..+++.. ...+++.++..+.+++|++|.+++.+|+.++...+ ..+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 9999999999999999999999999999885432 45899999999999999999999999999998766 6788
Q ss_pred hhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHH
Q 000050 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2622)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~L 1542 (2622)
.++ +.++|.+.++++|+++.||.+|..+++.++..+++..+.++++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777776665
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.54 E-value=1.6e-12 Score=176.60 Aligned_cols=389 Identities=14% Similarity=0.112 Sum_probs=284.6
Q ss_pred hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000050 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1576 ~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
..+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.|.+.+.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35677788888888999999999999887642121 1111 1235889999999987 8999999999999998632211
Q ss_pred --C--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc--hhH-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1654 --~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g--~~~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
. -...+|.|+..+.+. +..+|..++.+|+.++.... .+. . ...+|.++..+.+.++.+|..++.++..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 146788888888765 45688889999998875321 111 1 4578899999998999999999999999997
Q ss_pred hh-CcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---chh-hhhHHHHhhccCCCchHHHHHHHHHHH
Q 000050 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2622)
Q Consensus 1726 ~~-g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~---~~i-~~llp~l~~~l~d~~~rvR~~a~~ll~ 1800 (2622)
.. +..-..+...++|.++..+.+.++.+|..++.++..+....+. ..+ ..++|.+...+.+.+|.+|..++..++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345677999999999999999999999999888743221 111 247788888889999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHH
Q 000050 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2622)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~ 1880 (2622)
.+... + + .....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+....
T Consensus 325 ~l~~~---------------~-~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG---------------N-D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS---------------C-H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC---------------C-H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87411 0 0 11111111 12555666667788999999999999999987665554
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc--c-----hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1881 ~~l-~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
.++ ..+++.++..+.+.++.+|..|+.+|+.++...+. . ....++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 35677888888888999999999999999886443 2 123578888888999999999999999999876
Q ss_pred hhChh---------hHHHhH--HhHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1953 SAGKS---------QLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1953 ~~~~~---------~l~~~l--~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
..... .....+ ...++.+..++.++++++++.|..++..+.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 54321 111112 234677777888999999999888877664
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.5e-13 Score=163.69 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=166.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhCc-cchhhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhHHH
Q 000050 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2622)
Q Consensus 1342 Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~l~-~~~~~~~R~~al~al~~La~~~~~~~~~~v~ 1419 (2622)
+++.+ ++.+|..|++|+.+|..++.+.+. .......+++.+...+. +. +..+|.+|+.+++.++..+|..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 567899999999999999987432 11112378899999995 66 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC-ch-hhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~-p~-~l~~~L 1497 (2622)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+.+++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5788999999999999999999999999977654 55 357789
Q ss_pred hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHH
Q 000050 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2622)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp 1540 (2622)
+.++|.+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999988654554443
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.52 E-value=5.6e-12 Score=171.19 Aligned_cols=384 Identities=15% Similarity=0.128 Sum_probs=281.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhHH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHHh-
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQG- 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~-~~~~~~v-~~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~~- 1455 (2622)
++.+.+.+.+. ++..|..|+.++..++...+ ......+ ..++|.++.++.+++ +.+|..|..++..++...+...
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 55666677766 79999999999988876543 2122222 257999999999886 9999999999999987433321
Q ss_pred -H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhc
Q 000050 1456 -V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1456 -v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
+ ...+|.++..|.+++..++..++.+|+.++...+......+ ..++|.|+.++ .+.++.|+..|+++|..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 1 35899999999999999999999999999976554221111 35788899999 6789999999999999998643
Q ss_pred CChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCC
Q 000050 1531 KNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2622)
Q Consensus 1531 ~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 1610 (2622)
+++.. .....++|.|...+.+.+++++..++.++++++.. ..
T Consensus 235 ~~~~~------------------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~ 276 (528)
T 4b8j_A 235 PQPSF------------------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TN 276 (528)
T ss_dssp SCCCH------------------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CH
T ss_pred CCCcH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CH
Confidence 22110 01123566667777777888999999999988753 21
Q ss_pred Ccccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHH
Q 000050 1611 KDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2622)
Q Consensus 1611 ~~l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i 1685 (2622)
...... -..+++.+..++.++++.+|..|+.+|+.++...... .-..++|.|...+.+.....+|..++.+|+.+
T Consensus 277 ~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 277 DKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 111111 2357899999999999999999999999998632211 12457888888887663566888999999998
Q ss_pred HHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHH
Q 000050 1686 LAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2622)
Q Consensus 1686 ~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~ 1759 (2622)
+...... . . ..++|.++..+.+.++.+|..++.+++.++.........|+ ..+++.+...+.+.++.++..++.
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~ 436 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 436 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 7632211 1 1 36788999998888999999999999999987555555665 358999999999999999999999
Q ss_pred HHHHHHHHhhhc-------------hhh--hhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1760 AGHVLVEHYATT-------------SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1760 al~~lv~~~~~~-------------~i~--~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
++..++...... .+. ..++.+.....+.+..++..+..++..+
T Consensus 437 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 437 GLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999988654321 111 1345566666777888888888877765
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=1.1e-11 Score=172.28 Aligned_cols=460 Identities=11% Similarity=0.073 Sum_probs=314.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-ccch
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg-~~~l 1374 (2622)
.++.|+..++++++.||..++.+|..+....... ....++.++..|..+++...|..|+..|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4677788888999999999999998887543221 235788888888876678899999999987765321 1112
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
.....++.|.+++++. ++..|..|+.++..++.........++ ...+|.++..+.++++.++..+..++..++..-+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 2236788899999887 789999999999999976543222332 36899999999999999999888888888653222
Q ss_pred H--h--HHhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1454 Q--G--VKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1454 ~--~--v~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
. . -...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.+..++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 1 1356778888777654 455677888888887643221111113578999999999999999999999999976
Q ss_pred hcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC
Q 000050 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2622)
Q Consensus 1529 ~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2622)
...+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432100 0113566667777777888899999999888763
Q ss_pred CCCcccc-hHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCChHHHHHH
Q 000050 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2622)
Q Consensus 1609 ~~~~l~~-~l~~ll~~L~~~L~d~--~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~r~~a 1678 (2622)
.+..... .-...++.|..++.+. .+.+|..|+.+|+.++...++. .....+|.|.+.|.+.....++..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 1111000 1123677777777652 3799999999999997543321 0135688888888876555678888
Q ss_pred HHHHHHHHHHhchh-HH--HhHhHHHHHhccCC----------------------ChhhHHHHHHHHHHhhhhhCcchhh
Q 000050 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~----------------------~~~vR~~al~~l~~L~~~~g~~f~p 1733 (2622)
+..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..... ..
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~ 451 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RI 451 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 88888876422111 11 34566666655443 245666777777777653321 22
Q ss_pred hH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000050 1734 YL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1734 ~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~-~~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~ll 1803 (2622)
.+ ...+|.+...+.+.+++++..+..++..+...-. ...+ ...++.+.+.+.+++..+|..+...++.+.
T Consensus 452 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 3478999999999999999999988877653200 0111 124667778888999999999999998873
No 41
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.50 E-value=7.1e-09 Score=147.69 Aligned_cols=771 Identities=11% Similarity=0.076 Sum_probs=407.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhh----Cchhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQC 1496 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~----~p~~l~~~ 1496 (2622)
.+..++..+.+++...|+.|..-+..+-.. +..+.... .++. .+.+..+|..|+..|...... .|..-...
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~-~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKAD-QILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHH-HHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHH-HHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 344444445455556888888888777443 23333322 2332 234568899888888766542 22222222
Q ss_pred h-hhhHHHHhhhhcCC-----CHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000050 1497 L-PKIVPKLTEVLTDT-----HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2622)
Q Consensus 1497 L-~~ivp~L~~~L~D~-----~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~ 1570 (2622)
+ ..++..+.....++ .+.|+...+.++..++...-...+..+++.+...+..........+..+..
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~-------- 163 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL-------- 163 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Confidence 2 33445544444332 466778888889888876533445677888887775432222112221110
Q ss_pred hhhhhhHHHHHHhhhcCC-CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 000050 1571 APSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1571 ~~~l~~i~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~vR~~a~~aL~~L~~ 1648 (2622)
+...+...-.+. ...-|...-+.+ . ...+.+++.+...+. ...+.+...+.+++++...
T Consensus 164 ------L~EEV~~~~~~~l~~~r~~~lk~~l---~----------~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~ 224 (1023)
T 4hat_C 164 ------LSEEVFDFSAEQMTQAKALHLKNSM---S----------KEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLH 224 (1023)
T ss_dssp ------HHHHHHTSCTTTSCHHHHHHHHHHH---H----------HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHhhhccchHHHHHHHHHHH---H----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 000111000000 111111111111 1 112334444444443 2345666667777777665
Q ss_pred hhCCCC--chhhHHHHH-HHhhhcCChHHHHHHHHHHHHHHH-Hh-ch-----hHHHhHhHHHHHhc-------------
Q 000050 1649 GMGEEN--FPDLVSWLL-DALKSDNSNVERSGAAQGLSEVLA-AL-GT-----VYFEHILPDIIRNC------------- 1705 (2622)
Q Consensus 1649 ~~g~~~--~~~ll~~Ll-~~L~~~~~~~~r~~a~~~L~~i~~-~~-g~-----~~l~~llp~l~~~l------------- 1705 (2622)
-+.-.+ -..+++.++ ..+.+ ...|..++.++.+++. .. +. +.+..+++.++..+
T Consensus 225 WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~ 301 (1023)
T 4hat_C 225 WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKA 301 (1023)
T ss_dssp TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHH
T ss_pred hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 443221 235666666 44432 2356667777777664 11 11 11111112221111
Q ss_pred -----cCCChhhHHHHHHHHHHhhhhhC------cchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh
Q 000050 1706 -----SHQRASVRDGYLTLFKYLPRSLG------VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774 (2622)
Q Consensus 1706 -----~~~~~~vR~~al~~l~~L~~~~g------~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~ 1774 (2622)
.+.+.+.-++...+|..+..... +.+.+.+...+..++.+-..++.++-..++..+..+.+..-.+
T Consensus 302 ~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e--- 378 (1023)
T 4hat_C 302 TYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--- 378 (1023)
T ss_dssp HHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS---
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc---
Confidence 11223333444444444443322 2334444445556777766777777777777776665432111
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC-------CcccHHH---HHHHH---HHHhChhh
Q 000050 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD-------EGASTEA---HGRAI---IEVLGRDK 1841 (2622)
Q Consensus 1775 ~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dd-------e~~~~~~---~~~~l---~~~Lg~e~ 1841 (2622)
| ......+-...+++..++.++.-...-...++++++ +.+..+. .+..| ....+.+.
T Consensus 379 ---~-------~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~ 448 (1023)
T 4hat_C 379 ---P-------LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1023)
T ss_dssp ---T-------TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---h-------HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 0 000012222334555555554322110001111000 1111111 11111 11122222
Q ss_pred HHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHH
Q 000050 1842 RNEVLAALYMVRS--DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGELV 1913 (2622)
Q Consensus 1842 ~~~il~~L~~~~~--D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s-----~~~~~R~~A~~~L~~lv 1913 (2622)
...+++.+..... +.+|..|++++-++|+++.+... ...++++.+++.++..+.+ +...+|..++.++|+..
T Consensus 449 ~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 2223333322222 36899999999999999986543 4678999999999988752 34456777889999887
Q ss_pred HHhcc--chhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhH-------HHhHHhHHHHHHHHhcCCcHHHHHH
Q 000050 1914 RKLGE--RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRES 1984 (2622)
Q Consensus 1914 ~~~~~--~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~d~~VR~~ 1984 (2622)
+.+.. ..++.+++.+.+++.++++.+...||.++..++..++.... .+|++.++..+.....+-++.-+..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 76643 36888888888999888999999999999999988765432 4688999998888887778888888
Q ss_pred HHHHHHHHHHHhChhh-hhhhHHHHHHhcccCCchhHHHHHHHHHHhh--hcccccc--chhhhhhcCCCchHHHHHHHH
Q 000050 1985 AGLAFSTLFKSAGMQA-IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVLP--HILPKLVHLPLSAFNAHALGA 2059 (2622)
Q Consensus 1985 A~~al~~l~~~~g~~~-~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~--~~~~ilp--~Lip~L~~~~~~~~~~~aL~s 2059 (2622)
+.++++.+.+..+... ..+++..|+..+ ...+.+++.. ....++. .-+..+ ....+++++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~---------~~~~~~l~~~~~~~~~~~~d~~~~~~l------~~il~~~~~ 673 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLP---------NMAWDTIVEQSTANPTLLLDSETVKII------ANIIKTNVA 673 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHCTTGGGCHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhH---------HHHHHHHHHHHhcCchhhcCHHHHHHH------HHHHHHHHH
Confidence 9999999988876432 333443333222 1112222211 0000000 000000 012346667
Q ss_pred HHHHhCCChhhhHhhhHHHHHHhcCC-----------------CCHHH------HHHHHHHHHHhhhccCh------hcH
Q 000050 2060 LAEVAGPGLNFHLGTILPALLSAMGD-----------------DDMDV------QSLAKEAAETVTLVIDE------EGV 2110 (2622)
Q Consensus 2060 La~~~g~~l~~~l~~il~~Ll~~l~~-----------------~~~~v------r~~a~~al~~l~~~~~~------~~l 2110 (2622)
++...|..+.|++..+++.+++..+. +.+.+ |...+.-+...+....+ .-+
T Consensus 674 v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~ 753 (1023)
T 4hat_C 674 VCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV 753 (1023)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence 77778999999999999888865321 11222 22233333333333221 124
Q ss_pred HHHHHHHHhhcCCCChhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHH----HhcC---CChhHHHHHHHHHHHHHh
Q 000050 2111 ESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~----~l~d---~d~~V~~~a~~aL~~l~~ 2182 (2622)
++++..++.-.....+..|- ..+.+...++...+..+.+.++.++..++. ++++ ..++.|..-..-+.++..
T Consensus 754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~ 833 (1023)
T 4hat_C 754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1023)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 55555555555444455554 345555666776666677777777777654 3443 457778777777777766
Q ss_pred hcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh
Q 000050 2183 SVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE 2262 (2622)
Q Consensus 2183 ~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~ 2262 (2622)
+++...+. +| +.....++..++-++.....++-..+...+.++......
T Consensus 834 ~~f~~~~~---------------------------~~----~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~ 882 (1023)
T 4hat_C 834 KSFAAFLE---------------------------LP----PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER 882 (1023)
T ss_dssp HCTHHHHT---------------------------SC----HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HChHHHHc---------------------------CC----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 65432110 00 122344566666677777777777777777666654321
Q ss_pred --------hhhhhhhhhhhHHHHHhhcCCCC
Q 000050 2263 --------QSLKEFVIPITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2263 --------~~l~p~v~~i~~~Li~~l~~~~~ 2285 (2622)
.-++.|...+..-++.++.|..+
T Consensus 883 ~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 883 MGNVPFANEFHKNYFFIFVSETFFVLTDSDH 913 (1023)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 11334445555555566666533
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.50 E-value=2.9e-11 Score=167.85 Aligned_cols=466 Identities=14% Similarity=0.079 Sum_probs=315.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH--HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~--v~~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~~~ 1454 (2622)
..++.|.+.+.+. ++.+|..|+.++..++...... ... ...+++.++..+.+ +++.+|..|..++..+...-...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 5677788888876 7999999999999998754311 111 13678888888875 48899999999988765432211
Q ss_pred -hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc
Q 000050 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
.+ ...+|.+++.+.+++..++..++.+|..++...+...... -..++|.|++++.+.+++++..++.+|..++...
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~ 171 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence 11 3578999999999999999999999999998754332222 2578999999999999999999999999998531
Q ss_pred CC-h-hH--HhHHHHHHhhcCCCCh-hHH-HHHHHHHhccccccCChhh-hhhHHHHHHhhhcCCCHHHHHHHHHHHHHh
Q 000050 1531 KN-P-EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2622)
Q Consensus 1531 ~~-~-~i--~~ilp~Ll~~l~d~~~-~~r-~al~~L~~~~~~~~~~~~~-l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l 1603 (2622)
.. . .+ ...++.|.+.+.+++. ..+ .++..+............. -...+|.+.+.+.+.+..++..++.++.++
T Consensus 172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 1 11 3567888888876643 333 3444443222211111111 124688889999888999999999999999
Q ss_pred hhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcC-ChHHHHHH
Q 000050 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSGA 1678 (2622)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~-~~~~r~~a 1678 (2622)
+..... . .....+++.|..++.++++++|..++.+|+.++..-.+. .-...++.|+..+.+.. ...++..+
T Consensus 252 ~~~~~~-~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a 327 (644)
T 2z6h_A 252 SDAATK-Q---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327 (644)
T ss_dssp GGGCTT-C---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcchh-h---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHH
Confidence 875322 1 223468999999999999999999999999997642111 11346788888887643 25678888
Q ss_pred HHHHHHHHHHhchh-----HH--HhHhHHHHHhccCCC-hhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCC
Q 000050 1679 AQGLSEVLAALGTV-----YF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADE 1749 (2622)
Q Consensus 1679 ~~~L~~i~~~~g~~-----~l--~~llp~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~ 1749 (2622)
+.+|+.+....+.. .+ ...+|.+++.+.+.+ +.+|..++.+++.++..-... .... ..++|.+...+.+.
T Consensus 328 ~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~ 406 (644)
T 2z6h_A 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRA 406 (644)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhcc
Confidence 88888886432321 11 356888898888764 799999999999988643221 1111 23666666665542
Q ss_pred ----------------------ChHHHHHHHHHHHHHHHHhhh-chh--hhhHHHHhhccCCCchHHHHHHHHHHHHHHH
Q 000050 1750 ----------------------NESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1750 ----------------------~~~VR~~al~al~~lv~~~~~-~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~ 1804 (2622)
++.++..+..++..+...... ..+ ...+|.+.+.+.+.+..++..++..+..+..
T Consensus 407 ~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 407 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 345666777777765432111 111 2367888888888899999998888887641
Q ss_pred HhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhh
Q 000050 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2622)
Q Consensus 1805 ~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~ 1878 (2622)
. .+....+ ...| .+..+.....+.+..||+.|..+++.+....+..
T Consensus 487 ~---------------------~~~~~~i-~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 487 D---------------------KEAAEAI-EAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp S---------------------HHHHHHH-HHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred C---------------------HHHHHHH-HHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 0 0111122 2222 2334445568889999999999999998766543
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.50 E-value=8.5e-12 Score=170.98 Aligned_cols=504 Identities=14% Similarity=0.085 Sum_probs=311.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
-..|.+++...|..+. .+.+.-.+.++.+....+.+++.+.+++...|+-+...+..++...++. ..-++..+.
T Consensus 40 r~~l~~~~~~~k~~~l--~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~----~~l~in~l~ 113 (618)
T 1w63_A 40 RSSFREEDNTYRCRNV--AKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV----HLLMTNCIK 113 (618)
T ss_dssp HHHHTTTCTTTHHHHH--HHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHH--HHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH----HHHHHHHHH
Confidence 3344444444444432 2222223334445667777888888888888887777777776554432 234567777
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
+-++|+++.||..|.++|+.++. ..-...++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHH
Confidence 88899999999999999999873 12346778889999999999988 344444331 00 1122334567777888
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhh
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~---------------d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.|+++.++..|..++..++.. +++ ...++..++|.+...|. .+++-.+....++++.+...
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~--~~~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCER--SPD-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCS--HHH-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHhHHHHHHHHHHHHHHh--ChH-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 8999999999999999988753 211 12233344555544433 24688888889999887753
Q ss_pred hCC--CCchhhHHHHHHHhhhc--CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhh
Q 000050 1650 MGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2622)
Q Consensus 1650 ~g~--~~~~~ll~~Ll~~L~~~--~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~ 1725 (2622)
-.+ +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.+.++.+|..++.+++.++.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~ 342 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ 342 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 111 02223333333221111 112344455554443211 111123345666677788899999999999999998
Q ss_pred hhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000050 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2622)
Q Consensus 1726 ~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~ 1805 (2622)
..+..|.+|. +.++.++.|++.+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+...
T Consensus 343 ~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 343 TDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 8776666654 456777889999999999888776643 333566777777777777888999999999988643
Q ss_pred hcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 000050 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2622)
Q Consensus 1806 ~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ 1885 (2622)
.++ ..+.. +..+...+.+....++..++..+..++...|......++.
T Consensus 416 ~~~----------------~~~~~----------------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~ 463 (618)
T 1w63_A 416 YAP----------------SKRWH----------------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQR 463 (618)
T ss_dssp SCC----------------CHHHH----------------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH
T ss_pred hCc----------------cHHHH----------------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHH
Confidence 211 01111 1112112222223455556777777877777544444555
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc---------hh-hhHHHHHhhhcC--CCChhhHHhHHHHHHHHHHh
Q 000050 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMAS 1953 (2622)
Q Consensus 1886 ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~~L~~li~~ 1953 (2622)
+...+.... ........+++++|+....+... +. ..+++.+...++ ..++.+|..++.++..+...
T Consensus 464 L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 464 LYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 544443211 22333446899999998765321 11 223444444443 56889999999999888665
Q ss_pred hChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000050 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1954 ~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l 1992 (2622)
.+. ..+.+...+.....|.|.+||+.|...+.-+
T Consensus 542 ~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 542 FTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp CSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred Ccc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 432 1234444555567788999999998866554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.50 E-value=1.2e-11 Score=168.24 Aligned_cols=458 Identities=12% Similarity=0.076 Sum_probs=305.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc-----hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC-ccch
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~-----~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg-~~~l 1374 (2622)
.++.++..++++++.+|..++.+|..+....... ....++.+++.|..++++..|..|+.+|..+..... ...+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 5778888888999999999999998876432211 135788888888777678899999999998765321 1112
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2622)
...+.++.+.+.+.+. ++..|..|+.++..++...+.. ...+ ...+|.++..+.++++.+|..+..++..+...-+
T Consensus 98 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 2336788888999887 7899999999999998764432 2222 3689999999999999999999888887764221
Q ss_pred HH----hHHhhHHHHHhhccCCC-hhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1453 AQ----GVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1453 ~~----~v~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.. .-...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 11345777777776544 44555677788888764321111111467899999999999999999999999998
Q ss_pred hhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc
Q 000050 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2622)
Q Consensus 1528 ~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~ 1607 (2622)
...+... ....++|.+.+.+.+.++++|..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6432100 0123566677777777888899999999888752
Q ss_pred CCCCcccch-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhhhcCChHHHHH
Q 000050 1608 TEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2622)
Q Consensus 1608 ~~~~~l~~~-l~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~g~~-------~~~~ll~~Ll~~L~~~~~~~~r~~ 1677 (2622)
.++..... -...++.+.+.+.+ ..+.+|..+..+|+.++...++. .-...+|.+.+.+.++....+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 11111111 12356777777764 34899999999999997543221 012467888888887665567888
Q ss_pred HHHHHHHHHHHhchh-HH--HhHhHHHHHhccCCChhhHHHH----------------------HHHHHHhhhhhCcchh
Q 000050 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGY----------------------LTLFKYLPRSLGVQFQ 1732 (2622)
Q Consensus 1678 a~~~L~~i~~~~g~~-~l--~~llp~l~~~l~~~~~~vR~~a----------------------l~~l~~L~~~~g~~f~ 1732 (2622)
++..++.++..-... .+ ..++|.+++.+.+.++.+|..+ +.++..++... ...
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 888888876522111 11 3567777777766666666543 34444443321 101
Q ss_pred hhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000050 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1733 p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~-~~~~i--~~llp~l~~~l~d~~~rvR~~a~~ll~~l 1802 (2622)
..+ ...++.+...+.+.+++++..+..++..+...- ....+ ...++.+.+.+.+.+..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 236789999999999999999988887765210 00111 12457777778888888888887776543
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=2.7e-11 Score=164.87 Aligned_cols=466 Identities=12% Similarity=0.075 Sum_probs=289.0
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
+|.+++.+.+++..+|..++.+|+.++...+... ....+..++.+++.+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 4444444444444444445555555543222110 00124567788888864 4899999999999998653 110
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch-
Q 000050 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2622)
+. .+. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~---~i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HH---HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HH---HHH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 00 000 013567777778888889999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc-h
Q 000050 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-T 1691 (2622)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g-~ 1691 (2622)
-...+|.+.+++.++++.+|..+..++..++....+. .-...++.++..+++......+..+...+..+...-. .
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2467899999999999999999999999887521110 1124677788888776655444444555555442111 1
Q ss_pred hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1692 ~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
..+ ...++.++..+.+.++.++..++.++..++...+.. .....++|.+.+.+.++++++|..+..++..+.....
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 356888888888889999999999999998765431 2345789999999999999999999999888754311
Q ss_pred h--ch-h-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHH
Q 000050 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2622)
Q Consensus 1770 ~--~~-i-~~llp~l~~~l~d--~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~ 1843 (2622)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~------- 354 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH------- 354 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-------
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-------
Confidence 1 00 1 1245555555543 4578999999999887311 001 11111122221
Q ss_pred HHHHHHHHhccCCC-HHHHHHHHHHHHHHHhhChhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH--------------
Q 000050 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGR-------------- 1907 (2622)
Q Consensus 1844 ~il~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~p~~l~~~l-~~ll~~L~~~L~s~~~~~R~~A~~-------------- 1907 (2622)
..++.+...+.+.+ +.+|..++.+++.++.+... ...+. ..+++.++..+.+.++++|..|+.
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 12444444555554 68999999999998864332 22222 245677777777666666654444
Q ss_pred --------HHHHHHHHhccc---hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhc
Q 000050 1908 --------ALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALC 1975 (2622)
Q Consensus 1908 --------~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~ 1975 (2622)
+|..++...... .-...+|.+...+.+++++++..++.+++.+... ++..... -...++.+..++.
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhc
Confidence 333333211000 1235678888889999999999999999987532 1111111 1356788889999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 000050 1976 DSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1976 d~d~~VR~~A~~al~~l 1992 (2622)
+++++|+..|..++..+
T Consensus 512 ~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 512 SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988765
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=1.3e-10 Score=159.27 Aligned_cols=476 Identities=14% Similarity=0.107 Sum_probs=310.9
Q ss_pred ccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000050 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2622)
Q Consensus 1332 ~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~ 1411 (2622)
+.+........++.+. ++++..|+.+...+..++..- ++.. .-+++.+.+-++++ |+..|-.|+.+++.+..
T Consensus 65 G~d~~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~-~e~~--~l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~--- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDER-QDVH--LLMTNCIKNDLNHS-TQFVQGLALCTLGCMGS--- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCC-HHHH--HHHHHHHHHHHSCS-SSHHHHHHHHHHHHHCC---
T ss_pred CCCCcchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCC-cHHH--HHHHHHHHHhcCCC-CHhHHHHHHHHHHhcCC---
Confidence 4333334444555444 667888888888777666432 1111 14667788888887 78999888888877652
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCch
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~ 1491 (2622)
......++|.+..++.|+++.||++|..|+..+.... ++.++.+++.+.+.+.+++..++.+|+.+|+.++...|+
T Consensus 137 ---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 137 ---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 2345678899999999999999999999999998754 445677888888889999999999999999999876554
Q ss_pred hhhhhhhhhHHHHhhhhcC---------------CCHHHHHHHHHHHHHHhhhcCChhH-HhHHHHHHhhcC------CC
Q 000050 1492 QLSQCLPKIVPKLTEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLT------DP 1549 (2622)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L~D---------------~~~~VR~aA~~aL~~l~~~~~~~~i-~~ilp~Ll~~l~------d~ 1549 (2622)
. ...+..++|.+++.|.+ +++..+....++|+.++.. +|.. +.+.+.|...+. +.
T Consensus 213 ~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 213 M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTH
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccch
Confidence 2 22344556666555442 4788999999999988753 3332 333333333321 11
Q ss_pred ChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHh
Q 000050 1550 NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2622)
Q Consensus 1550 ~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2622)
+..+. +|+..+..... ........++.+.+.+.+.++++|..+...++.++.. .+..+.+| .+.+...+
T Consensus 290 ~~aV~~ea~~~i~~l~~----~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~~----~~~i~~~l 359 (618)
T 1w63_A 290 GNAILYETVLTIMDIKS----ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQRH----RSTIVDCL 359 (618)
T ss_dssp HHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGGG----HHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHHH----HHHHHHHc
Confidence 12233 56666654211 1222234667777888888889999999999999874 23334444 45666778
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCC
Q 000050 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ 1708 (2622)
Q Consensus 1629 ~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~ 1708 (2622)
.|++..+|..|+..+..++. +.....+++.++..+.+.+ ...|..++.+++.++..+... ....++.+++.+.+.
T Consensus 360 ~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 360 KDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCE-PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTA 434 (618)
T ss_dssp GSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhc
Confidence 89999999999999988865 4457788888888887654 558889999999998876433 355667777777766
Q ss_pred ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCC--CChHHHHHHHHHHHHHHHHhhhc----------hhhhh
Q 000050 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2622)
Q Consensus 1709 ~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d--~~~~VR~~al~al~~lv~~~~~~----------~i~~l 1776 (2622)
...++..+...+..+....++. .. .+++.+...+.+ ..+.+...++..++.+....... ....+
T Consensus 435 ~~~v~~~~~~~l~~ii~~~p~l-~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~ 510 (618)
T 1w63_A 435 GSYVRDDAVPNLIQLITNSVEM-HA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEV 510 (618)
T ss_dssp GGGSCSSHHHHHHHHHHHSCST-HH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHH
T ss_pred cchhHHHHHHHHHHHHhcChhH-HH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHH
Confidence 6677777777777777655432 22 234444444442 23444456677776665443210 00123
Q ss_pred HHHHhhccC--CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhcc
Q 000050 1777 LPAVEDGIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2622)
Q Consensus 1777 lp~l~~~l~--d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~ 1854 (2622)
.+.+...+. .++..+|..++..+..+..+.+ +. . ..+. .+ +-.+..
T Consensus 511 ~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~--------------~~--~----~~l~---------~~---L~~~~~ 558 (618)
T 1w63_A 511 LDILESVLISNMSTSVTRGYALTAIMKLSTRFT--------------CT--V----NRIK---------KV---VSIYGS 558 (618)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCS--------------SC--H----HHHH---------HH---HHHHTT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCc--------------ch--H----HHHH---------HH---HHHhcC
Confidence 333333221 4567788888888877753321 00 0 1111 11 222357
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 000050 1855 DVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~ 1873 (2622)
|.+.+||+.|...|.-+..
T Consensus 559 ~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 559 SIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 8899999999999987664
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.39 E-value=8.5e-11 Score=157.75 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=269.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
++.++..+...++.++-.|..+++.+.+.-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56677788888899999998898888653221 122 4579999999975 45788999999999999877665433
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2622)
.. ...+|.|+.+|.++++.||+.|+++|+.++... ++. ...++.|...+..++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 32 357899999999999999999999999998542 221 22344444444433211
Q ss_pred CChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1569 ~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
.......+.+...+.+++..- .+..-......++|.|..++.+++++++..++.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 112345666778888887642 2222223456789999999999999999999999999876
Q ss_pred hhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhH---H-HhHhHHHHHhccCCChhhHHHHHHHH
Q 000050 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2622)
Q Consensus 1649 ~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~---l-~~llp~l~~~l~~~~~~vR~~al~~l 1720 (2622)
...+. ....++|.|.+.+.+.. ..++..++.+++.++....... . ...++.+...+.++++.+|..++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457888888887654 5577788888888764322111 1 34566777778889999999999999
Q ss_pred HHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHHH
Q 000050 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2622)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~-----~llp~l~~~l~d~~~rvR~~ 1794 (2622)
+.++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+.+.+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999865433222222 248899999999999999999999998877654333221 26788888888999999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
+++.+..++...... . ..+.. ..+++..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999887542110 0 01111 12233332 12223333567788999999999877654
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.37 E-value=6.1e-10 Score=151.78 Aligned_cols=525 Identities=13% Similarity=0.072 Sum_probs=315.9
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH
Q 000050 1887 MNTLISSLAS---SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2622)
Q Consensus 1887 l~~L~~~L~s---~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l 1963 (2622)
+..+-+.+.+ .+...|..+..-+-.+ ...|.++. ...+.+.+.+.+++...|..+..++..+.... + +..
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~----e~~ 109 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S----ELI 109 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H----HHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c----HHH
Confidence 3344444442 2444444444333222 22465543 34455555778889999988887777654321 1 233
Q ss_pred HhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhh
Q 000050 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2622)
Q Consensus 1964 ~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~ 2043 (2622)
--+++.+.+-+.|+++.+|..|..+++.+.. + +
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~----e---------------------------------------- 142 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGS---R----E---------------------------------------- 142 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H----H----------------------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H----H----------------------------------------
Confidence 4567778888889999999888888776521 1 0
Q ss_pred hhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHHHHHHhc--CCCCHHHHHHHHHHHHHhhhccChhcHH--HHHHHHHh
Q 000050 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLK 2119 (2622)
Q Consensus 2044 L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l--~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~ 2119 (2622)
..+.++|.+.+.+ .+.++.||..|+-|+..+.... ++.++ .+++.+.+
T Consensus 143 ---------------------------~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~ 194 (621)
T 2vgl_A 143 ---------------------------MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVH 194 (621)
T ss_dssp ---------------------------HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHH
Confidence 1233455566667 7888999999999999888743 33333 67788888
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCc
Q 000050 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2120 ~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~-------------d~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
.+.|.++.++.+|+.++..++...+..+.++.+.+++.|..++.+. ++=.+-.....+..+......
T Consensus 195 lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~ 274 (621)
T 2vgl_A 195 LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP 274 (621)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH
T ss_pred HhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH
Confidence 8899999999999999999998776667777777777776665432 233333333333332211000
Q ss_pred cchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCC--HHHHHHHHHHHHHHHhhcChhh
Q 000050 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQS 2264 (2622)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~--~~~r~~aa~~L~~l~~~~~~~~ 2264 (2622)
+....+.+.+.+.+....+ . |+.- .+.+.+ ..+...++.++..+ .+
T Consensus 275 ~~~~~l~~~L~~il~~~~~------------~-----~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~--- 322 (621)
T 2vgl_A 275 AVRGRLTECLETILNKAQE------------P-----PKSK---------KVQHSNAKNAVLFEAISLIIHH---DS--- 322 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHS------------C-----CSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---
T ss_pred HHHHHHHHHHHHHHHhhcc------------C-----cccc---------cccccchHHHHHHHHHHHHHhc---CC---
Confidence 1111111111111111000 0 0000 001111 13333444444433 22
Q ss_pred hhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhc
Q 000050 2265 LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSAL 2343 (2622)
Q Consensus 2265 l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~-d~~~~vR~~Aa~aLg~L~~~ 2343 (2622)
..++......+|.+.+.+. +.++|..++.+|..++...+. .+++......++.++. |++..+|..|...|..++.
T Consensus 323 ~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~- 398 (621)
T 2vgl_A 323 EPNLLVRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD- 398 (621)
T ss_dssp CHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-
Confidence 2234455667777887654 789999999999999765431 1234455678889999 9999999999999988864
Q ss_pred ccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000050 2344 STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2344 ~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
..+++.++.+|...+.+.|.+.|..++.+++.+..+..... .-+.+.++.++... .+.+...+...+..+....|
T Consensus 399 ~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 399 RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-TWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGC
T ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCCh
Confidence 34688999999999988899999999999999988776544 44555555554332 21222333444555555555
Q ss_pred chHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChh--HHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000050 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2622)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2622)
+-. ...+..+...+.++.. +...+.....++.+.++.+...+. ..+++..+.+......+.+|..++.|+.++..
T Consensus 474 ~~~-~~~~~~l~~~l~~~~~--~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 474 DVQ-GYAAKTVFEALQAPAC--HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp SCH-HHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHcCccc--hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 322 1223333333333332 222332333555555544432211 13566777777888899999999999999876
Q ss_pred hhhhcCCCCchhhHhHHHHHHh-hcC--CCCHHHHHHHHHHHHHHHh
Q 000050 2502 HQIQSGPANTTVVVDILASVVS-ALH--DDSSEVRRRALSALKSVAK 2545 (2622)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~-~l~--d~s~dvr~~a~~~l~~~a~ 2545 (2622)
... ...+.+..++. ... |.+.|||+.|..-.+-+..
T Consensus 551 ~~p--------~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 551 LFP--------EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTV 589 (621)
T ss_dssp HCG--------GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred HCh--------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence 542 12344444443 334 8999999999998887754
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.36 E-value=2e-10 Score=155.14 Aligned_cols=394 Identities=15% Similarity=0.162 Sum_probs=270.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhhHHHHHhhccC-CChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
.++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.+++.|.. ++...+..|+.+|..++.+.+.+..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456777788888888988888888877643221 122 5689999999964 5578999999999999987766533
Q ss_pred hh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH------HhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000050 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2622)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2622)
.. -...+|.|+.++.++++.||..|+++|+.++..- ++. ...++.|+..+.+++..
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~~~~~--------------- 219 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAVPDLS--------------- 219 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCSSCGG---------------
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhccchh---------------
Confidence 22 2468899999999999999999999999998532 222 22345555554433211
Q ss_pred cCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1568 ~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
.......+.++..+.+++..- .+..-......++|.|..++.+++++++..++.+|+.++
T Consensus 220 -------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 220 -------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp -------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred -------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 012345666777888887642 222222345678999999999999999999999999988
Q ss_pred hhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchh--H-H-HhHhHHHHHhccCCChhhHHHHHHH
Q 000050 1648 RGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTL 1719 (2622)
Q Consensus 1648 ~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~--~-l-~~llp~l~~~l~~~~~~vR~~al~~ 1719 (2622)
....+. ....++|.|+..+.+.+ ..++..++.+++.++.+.... . . ...++.+...+.++++.+|..++.+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 643211 12467888888887654 557778888888876432211 1 1 3567888888999999999999999
Q ss_pred HHHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHH
Q 000050 1720 FKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQ 1793 (2622)
Q Consensus 1720 l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~-----~llp~l~~~l~d~~~rvR~ 1793 (2622)
++.++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9999864433222222 248899999999999999999999998887654333221 2678888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Q 000050 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2622)
Q Consensus 1794 ~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2622)
.+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++.
T Consensus 439 ~~L~aL~nil~~~~~~-------------~-~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 439 VILDAISNIFQAAEKL-------------G-ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHHHHTT-------------T-CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhHhc-------------c-ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999887542110 0 0111212 2222221 2222233467789999999999877654
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.35 E-value=3.7e-10 Score=153.85 Aligned_cols=479 Identities=13% Similarity=0.104 Sum_probs=302.0
Q ss_pred HHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --++..+.+-++|+++.+|..|.++|+.+..
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---- 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----
Confidence 44556778888899999999999988888888887666543 3456677788899999999999999999853
Q ss_pred hh-HHhHHHHHHhhc--CCCChhHH-HHHHHHHhccccccCChhhhh--hHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1533 PE-IASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1533 ~~-i~~ilp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~~~~~~l~--~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
++ .+.++|.+.+.+ .|++..+| .|+-++... .. ..+.... .+++.+.+.+.|+++.++..|...+..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 44 478889999999 89999998 344433321 11 1122222 5788889999999999999999999998874
Q ss_pred cCCCCcccchHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhhhcC
Q 000050 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2622)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~vR~~a~~aL~~L~~~~g~~---~~~~ll~~Ll~~L~~~~ 1670 (2622)
+++.+.++.+.++..+.+++.+. +|-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 34456677777777777776432 4667777777776654311111 12233444443322111
Q ss_pred ----------ChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1671 ----------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1671 ----------~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
...+..+++.++-.+. ...+.....+..+...+.+.++++|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0012222222222211 11233455666777777888999999999999999876542 124455566
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000050 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2622)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~ 1819 (2622)
.++.++. |++.+||..+++.+..++ .++.++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 7777888 999999998888776654 33456677788877777777778888888888876543211
Q ss_pred CCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCC-
Q 000050 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2622)
Q Consensus 1820 dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~- 1898 (2622)
.+.....+.+.+. +....+...+...+..++...|.. +.+ .+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll~----------------~~~~~v~~ev~~~l~~ii~~~~~~-~~~---~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIR----------------IAGDYVSEEVWYRVIQIVINRDDV-QGY---AAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHH----------------HHGGGSCSHHHHHHHHHHGGGCSC-HHH---HHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHH----------------hhcccchHHHHHHHHHHHhCChhH-HHH---HHHHHHHHHcCccc
Confidence 0111112222211 111113333444555555554432 221 2334455566543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--hhh-hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh
Q 000050 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2622)
Q Consensus 1899 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2622)
...-..+++++|+........ ..| .++..+...+.+.++.+|..++.++..+....+ + . .+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 234445668999887765432 222 556667666778889999999999888765432 2 1 133333444445
Q ss_pred c--CCcHHHHHHHHHHHHHH
Q 000050 1975 C--DSILEVRESAGLAFSTL 1992 (2622)
Q Consensus 1975 ~--d~d~~VR~~A~~al~~l 1992 (2622)
. |.|.+||+.|...+.-+
T Consensus 568 ~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 5 88999999998765443
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.34 E-value=1.9e-10 Score=154.31 Aligned_cols=383 Identities=14% Similarity=0.135 Sum_probs=254.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
+.+++.+ .++|...+..|...+..+...-. ...+...+++|.|.+++.+..++..+..|..++..++.+-...-..
T Consensus 60 ~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344444 34455666777777766654221 2223334788999999987667889999999999998654332222
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h-H-HhhHHHHHhhccCCCh-----hhHHHHHHHHHHHH
Q 000050 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2622)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~-v-~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2622)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. . . ...++.++..+...+. ...+.++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 222 47999999999999999999999999997643322 1 1 4568888888876543 34567788888888
Q ss_pred hhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000050 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2622)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2622)
... +.........++|.|.+++.+.+++|+..|+++|..++..-. +.. ..+.
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i~---- 271 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 271 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHHH----
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHHH----
Confidence 653 222223346788999999999999999999999999975321 100 0000
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
-..++|.|...+.+.+..++..++.++++++.. +. .... .-...++.|..++.++++.+|..|+.+|
T Consensus 272 --------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~-~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CH-HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred --------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CH-HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456667777777888999999999988753 21 1111 1123566777788899999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~ 1714 (2622)
+.++....+. .-..++|.++..+.+.+ ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997632211 12357888888887664 56888999999998876544432 35688899999999999999
Q ss_pred HHHHHHHHhhhhhC---c--chhhhHHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1715 GYLTLFKYLPRSLG---V--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g---~--~f~p~l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
.++.++..+..... . .+..++.. .+..+-....+++++|++.|...+.
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999888765432 1 11111211 2334444444556666655544443
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.9e-11 Score=147.21 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=168.6
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhc
Q 000050 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2622)
Q Consensus 1774 ~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~ 1853 (2622)
..+-|.+.+.+.+.+|+.|.+++..+..++...++.. ... +.+++..+...+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----------~~~------------------~~~i~~~L~~~l 65 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----------NGE------------------YGALVSALKKVI 65 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----------CCC------------------CHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----------CCC------------------HHHHHHHHHHHh
Confidence 3455567788899999999999999999886532210 000 123444444556
Q ss_pred c-CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000050 1854 S-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2622)
Q Consensus 1854 ~-D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2622)
. |.+..||..|+.+++.++...+..+.+|++.+++.++..+.+++..+|..+..++..++...+ .+.++|.+...+
T Consensus 66 ~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l 142 (242)
T 2qk2_A 66 TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESL 142 (242)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 4 999999999999999999988888999999999999999999999999999999999987643 567889999999
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChh-hHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2622)
+++++.+|..++.+|+.++..++++ ...++++.++|.+..++.|++++||..|..+++.+....|...+.++++.
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999988877654 35778999999999999999999999999999999999998666665543
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.32 E-value=5e-10 Score=151.24 Aligned_cols=383 Identities=14% Similarity=0.134 Sum_probs=254.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000050 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2622)
Q Consensus 1340 ~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~ 1416 (2622)
+.+++.+. +++...+..|...+..+...-. ...+...+++|.|.+++....++..+..|+.++..++.+.......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444433 3445666666666665553221 1222234788999999976667889999999999998654322222
Q ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h-H-HhhHHHHHhhccCCCh-----hhHHHHHHHHHHHH
Q 000050 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2622)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~-v-~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~la 1486 (2622)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. . + ...+|.++..+...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 57999999999999999999999999987643222 1 1 4568888888876543 34567788888887
Q ss_pred hhC-chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000050 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2622)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2622)
... +.........++|.|..++.+.+++|+..|+++|..++..-. +.. ..+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHHH----
Confidence 653 222223346788999999999999999999999999985321 100 0000
Q ss_pred cccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc--hHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1566 ~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~--~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
-..++|.|...+.+.++.++..++.++++++.. +. .... .-...++.|..++.++++.+|..|+.+|
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~-~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--ch-HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 012456667777778888999999999998752 21 1111 1234677888899999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHH-----HhHhHHHHHhccCCChhhHH
Q 000050 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2622)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l-----~~llp~l~~~l~~~~~~vR~ 1714 (2622)
+.++...... .-..++|.++..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.+.++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998632211 12357888888887664 55888899999998876544432 34688999999999999999
Q ss_pred HHHHHHHHhhhhhCc--chhhh---HHh--HHHHHHhhcCCCChHHHHHHHHHHH
Q 000050 1715 GYLTLFKYLPRSLGV--QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGH 1762 (2622)
Q Consensus 1715 ~al~~l~~L~~~~g~--~f~p~---l~~--ii~~ll~~L~d~~~~VR~~al~al~ 1762 (2622)
.++.++..+...... ...+| +.. .+..+-....+++++|++.|...+.
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999988887654321 11111 111 2334444444556666655544443
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.3e-11 Score=144.26 Aligned_cols=200 Identities=10% Similarity=0.196 Sum_probs=163.1
Q ss_pred HHHhhccCCChhhHHHHHHHHHH-HHhhCchhh--hhhhhhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhcC-C----
Q 000050 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 1532 (2622)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~-la~~~p~~l--~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~-~---- 1532 (2622)
.+.+.+.+++|..|+.+++.|.. +++++++.. ...+..++..+.+.+ +|+|..||..|+++|+.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34567789999999999999999 987777655 455678899999999 89999999999999999999886 2
Q ss_pred hhHHhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcC
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~ 1608 (2622)
++...++|.++..+.|....+++ |++.+... .......+++..+++.+...+++.+|.+|..++.+++.++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 56678999999999998887763 44444431 11111112377899999999999999999999999999998654
Q ss_pred CC-CcccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000050 1609 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2622)
Q Consensus 1609 ~~-~~l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~L 1662 (2622)
.. ..+.+|+ +.++|.+.+.+.|.++.||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666544
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.28 E-value=1e-06 Score=124.68 Aligned_cols=384 Identities=11% Similarity=0.121 Sum_probs=227.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHhcc--chhhhHHH
Q 000050 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLGE--RVLPSIIP 1926 (2622)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~p~-~l~~~l~~ll~~L~~~L~s~~-----~~~R~~A~~~L~~lv~~~~~--~~l~~llp 1926 (2622)
..+|..+++++=++++++..... .-++++|.+++.++.....+. ..++...+.++|+..+.+.. ..++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 45799999999999999765543 345889999999988775431 22344444577776665543 36778888
Q ss_pred HHhhhcCCCChhhHHhHHHHHHHHHHhhChhh-------HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000050 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2622)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~-------l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~ 1999 (2622)
.+.+++.++++.++..||.++..+...++..- ..+|+..++..+.....+-.++-...-.++++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88888999999999999999999988876542 24578888888877777767776666777888888777653
Q ss_pred h-hhhhHHHHHHhcccCCchhHHHHHHHHHHhhh--ccccccc--hhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhh
Q 000050 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVR--TTAVLPH--ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGT 2074 (2622)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~--~~~ilp~--Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~ 2074 (2622)
. ...++..|+..+ ...+.+++... ...++.. .+..+. .-.+...+++...|..+.+++..
T Consensus 650 ~~~~~~i~~Lm~~~---------~~~w~~l~~~~~~~~~~~~d~~~i~~l~------~il~~n~~v~~~~g~~f~~~~~~ 714 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLP---------NQVWDSIIQQATKNVDILKDPETVKQLG------SILKTNVRACKAVGHPFVIQLGR 714 (1073)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHHCGGGGGCHHHHHHHH------HHHHHHHHHHHHHCGGGHHHHHH
T ss_pred chHHHHHHHHHHHH---------HHHHHHHHHHhhcCchhccChHHHHHHH------HHHhhhHHHHhhcchhHHHHHHH
Confidence 3 233333322211 11222222110 0000000 000000 11234556667789999999998
Q ss_pred hHHHHHHhcCC-----------------CCHH------HHHHHHHHHHHhhhccCh------hcHHHHHHHHHhhcCCCC
Q 000050 2075 ILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQ 2125 (2622)
Q Consensus 2075 il~~Ll~~l~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~d~~ 2125 (2622)
+.+.+++..+. ..+. +|...+..+...+...++ .-+++++..++.-.....
T Consensus 715 i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~ 794 (1073)
T 3gjx_A 715 IYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV 794 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 88877754211 1122 333444444444433321 113444544444444444
Q ss_pred hhHHH-HHHHHHHHHHhhccccccccHHHHHHHHHH----Hhc---CCChhHHHHHHHHHHHHHhhcCccchhhHHHHHH
Q 000050 2126 ASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR 2197 (2622)
Q Consensus 2126 ~~vR~-~A~~~L~~l~~~~~~~l~~~~~~il~~L~~----~l~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~ 2197 (2622)
|..|- ..+.++..++...+..+.+.++.++..++. +++ +..++.|..-..-+.++..++....+
T Consensus 795 p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~-------- 866 (1073)
T 3gjx_A 795 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL-------- 866 (1073)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTT--------
T ss_pred cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHH--------
Confidence 44454 455666677777777788888888887765 344 34567777777777776665433211
Q ss_pred HHHhhchhhhhhhhcCCccccccCCCC-cCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcCh------hhhhhhhh
Q 000050 2198 DAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVI 2270 (2622)
Q Consensus 2198 ~~l~~~~~~~~~~~~~~~~~l~g~~~~-~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~------~~l~p~v~ 2270 (2622)
.+| .....++..++-++.+...++-+.+...+-.+...... .-++.|.-
T Consensus 867 ------------------------~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~ 922 (1073)
T 3gjx_A 867 ------------------------AIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFC 922 (1073)
T ss_dssp ------------------------TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 111 12344556666667677777767777776666654221 22445555
Q ss_pred hhhHHHHHhhcCCCC
Q 000050 2271 PITGPLIRIIGDRFP 2285 (2622)
Q Consensus 2271 ~i~~~Li~~l~~~~~ 2285 (2622)
.+..-++.++.|..+
T Consensus 923 ~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 923 DILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhCchH
Confidence 555556666766543
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=2e-09 Score=132.81 Aligned_cols=244 Identities=17% Similarity=0.121 Sum_probs=162.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhh
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2622)
++.+.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..|..++..+.. .+..+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 45566677766 7888888888777653 1 3567778888888889999888888876632 12234445
Q ss_pred HHHHHh-hccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhH
Q 000050 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2622)
Q Consensus 1460 lp~Ll~-~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2622)
++.+.+ .+.++++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555543 35677888888888888888754432 234667788888888888999888888887764 235
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchH
Q 000050 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2622)
Q Consensus 1539 lp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2622)
+|.|...+.|++..+| .++..+.... . .-..++|.+...+.|.++.+|..++..++.+..
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------ 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------
Confidence 6777777788877777 3555554311 0 012456777777777788888888888777641
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHH
Q 000050 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r 1675 (2622)
+..++.+...+.|++ ||..++.+++.+.. +..+|.|.+.+.++.....+
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHH
Confidence 135666666776643 77777777777532 35677777777654433333
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.13 E-value=3.4e-06 Score=114.55 Aligned_cols=306 Identities=15% Similarity=0.101 Sum_probs=185.8
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCC--------hhHHHHHHHHHHHHHhhcc
Q 000050 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ--------ASIRRSSAYLIGYFYKNSK 2144 (2622)
Q Consensus 2076 l~~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~--------~~vR~~A~~~L~~l~~~~~ 2144 (2622)
+..|-+++. ..++.+|..++-+++.+......+ .+..|...+.+.+ +.+|..|+..||..+-.++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444444443 345666666666666654433322 2333333333222 4566666666666543332
Q ss_pred ccccccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCC
Q 000050 2145 LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2622)
Q Consensus 2145 ~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~ 2224 (2622)
-++++..|...+.|++..++..|..+|+-+.-...
T Consensus 470 ------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg--------------------------------------- 504 (963)
T 4ady_A 470 ------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG--------------------------------------- 504 (963)
T ss_dssp ------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC---------------------------------------
T ss_pred ------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC---------------------------------------
Confidence 13455555665555555555555555554422111
Q ss_pred cCchhhHHHHHHHH-ccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhc
Q 000050 2225 KALQPLLPIFLQGL-ISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L-~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2622)
-..++..+++.+ .+.+..+|..++.+||-+.-... + ....+++.+....++-+|..+..+++.-....
T Consensus 505 --n~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~-e--------~~~~li~~L~~~~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 505 --KPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ-E--------LADDLITKMLASDESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp --CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG-G--------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS
T ss_pred --CHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh-H--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 111222222222 23467889999999998864332 1 23445666665568889999988888554443
Q ss_pred CCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhh-hcCCHhHHHHHHHHHHHHHhhcCC
Q 000050 2304 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTALKGVLKHAGK 2382 (2622)
Q Consensus 2304 ~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l-~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2622)
|. ...++..+-.+..|++..||..|+.+||.+..-.+ ..++.++..+ ++.++.+|..+..||+.+....|.
T Consensus 574 Gn-----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 574 GN-----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp CC-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred CC-----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence 33 12334444456678899999999999998744233 3577777765 557899999999999887643222
Q ss_pred CCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHhhcCC--CCchhhHhHHHHHHHH
Q 000050 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNLASS--PSWAARHGSVLVFATF 2456 (2622)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~~~~--~~~~~r~~~~~~L~~~ 2456 (2622)
..+++.|.....|+++.||..|+..||.+..-..+. .+..+++.+.....+ .+...+.++..+.+-+
T Consensus 646 -------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 646 -------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp -------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456777888889999999999999999998766655 577777776654432 3444555555555443
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=2.4e-09 Score=132.11 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=185.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
.++.++..+.|+++.||..|..++..+. -...+|.+++.+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4677888999999999999999988773 2457888899999999999999999998875321 123455
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
++.+. .+++|+++.||..|+++|+.++...+ ......++.|...+.|++..+| .++..+.... . ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------D---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC------C---HHHH
Confidence 66665 35789999999999999999985432 2235678999999999999888 5666665321 1 2357
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~l 1658 (2622)
|.|...+.|.++.+|..++..++.+... -+..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 8888889999999999999999887421 1357788889999999999999999998864 2467
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccC-CChhhHHHHHHH
Q 000050 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTL 1719 (2622)
Q Consensus 1659 l~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~-~~~~vR~~al~~ 1719 (2622)
+|.|...+.+++ +|..++.+++.+ |. +..+|.+.+.+.+ .++.++..++..
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 788888876543 677777777765 33 3566777776654 455555444443
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.12 E-value=1.5e-09 Score=149.21 Aligned_cols=285 Identities=16% Similarity=0.273 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHhchhH-H-HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--chhhhHHhHHHHHHhhcCCC
Q 000050 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2622)
Q Consensus 1674 ~r~~a~~~L~~i~~~~g~~~-l-~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~p~l~~ii~~ll~~L~d~ 1749 (2622)
.+..++..++.++..-+... . ..++..+.+.+.+.... ++++.++..++...+. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45666777777665332211 1 24566667776665444 9999999999988764 78999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHH
Q 000050 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2622)
Q Consensus 1750 ~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~-~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~ 1828 (2622)
...||.+|..+...++..+++.++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999874321
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000050 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2622)
Q Consensus 1829 ~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p-~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~ 1907 (2622)
..+. ..+.++++.+..+..|+..+|..+|..++..++.... .++.+++|. +++++.+++.. -.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~----~~~~~~~p~~~-----~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS----LIQCIADPTEV-----PE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH----HHHHHHCTTHH-----HH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH----HHHHhcChhhh-----HH
Confidence 1111 1345788888889999999999999999999887433 445555555 55666777541 12
Q ss_pred HHHHHH-----HHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhC-hhhHHHhHHhHHHHHHHHhc-CCcHH
Q 000050 1908 ALGELV-----RKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2622)
Q Consensus 1908 ~L~~lv-----~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~-~~~l~~~l~~ll~~l~~~L~-d~d~~ 1980 (2622)
|+..+. ..+....+.-+.|.|.++|+++...+++.++..+.++.+-.. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 222221 112233577899999999999998888888888888776553 56778999999999998764 45999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000050 1981 VRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1981 VR~~A~~al~~l~~~~g 1997 (2622)
+|+.|.+|+..+.+..+
T Consensus 311 ~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999977644
No 60
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.08 E-value=1.1e-07 Score=139.67 Aligned_cols=534 Identities=13% Similarity=0.110 Sum_probs=292.5
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCccccchhhheeeecCCchHHHHHHH--------HHHHhcCC
Q 000050 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2622)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2622)
+++.++|..+++| |+++|++|++.|++.... |........+. ...+.+..+|.+|. ..|.....
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3588889999998 778899999999876311 11111111111 12344566666654 35755332
Q ss_pred CCCCCh-HhHHHHhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000050 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2622)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~~la~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2622)
+.++.+ ..++..+.+ +...+|++.+++++.++. .||+.|++++..+.+.... +...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 222224 566766542 468999999999999874 6888888888888765421 12457788
Q ss_pred HHHHHHhhhhh-CCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHhcCC----------
Q 000050 1198 ALALHSAADVL-RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK---------- 1266 (2622)
Q Consensus 1198 ~~al~~~~~~~-~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~~~~~llp~~~~~l~~~---------- 1266 (2622)
..+|..+++.+ ..++ ... .|..-+. ..+. +..+.+++.+...+...
T Consensus 154 L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQT---------------LPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp HHHHHHHHHHHHTSCC---------------SCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccccc---------------hHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888887632 2111 111 1111111 0011 11333333333333210
Q ss_pred CCC---hhhhhhhhhHHHHHHHHHhhhhccCCcc-h----HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc--c--
Q 000050 1267 ASD---EEKYDLVREGVVIFTGALAKHLAKDDPK-V----HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E-- 1334 (2622)
Q Consensus 1267 ~~~---~~~~~~vr~~~~~~~~~la~~l~~~~~~-v----~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~--~-- 1334 (2622)
..+ .+....++..+.. .+..++.-.+.. + ..+++.+...+.+ +++|.+|.+||..++..... .
T Consensus 211 ~~~~~~~~~~~~l~~~aL~---~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~ 285 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALN---TLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRK 285 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHH---HHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHG
T ss_pred ccchhhhhhhHHHHHHHHH---HHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHH
Confidence 000 0112223333333 333333221110 0 1356666666654 57899999999988864321 1
Q ss_pred -h-----HHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHHhhh-----------CccchhhhcHHHHHHHHHhCC
Q 000050 1335 -A-----PTLVSRLLDQLMK-------SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADR 1390 (2622)
Q Consensus 1335 -~-----~~~i~~Ll~~L~~-------~~~~~~r~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~l~~~ 1390 (2622)
. ...+..++..+.. .+++..++.-+..+..+...+ ....+ ..+++.+..+..+.
T Consensus 286 ~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 286 PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS
T ss_pred HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc
Confidence 0 1123344544321 112344444444444333111 11122 26788888888776
Q ss_pred CCHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHH---HHHcCCCC------------------------HHHHHH
Q 000050 1391 NSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREA 1439 (2622)
Q Consensus 1391 ~~~~~R~~al~al~~La~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~a 1439 (2622)
+..+-..++.....+.+.. ...+.+++.++++.+ +..+.-+. ...|+.
T Consensus 364 -~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~ 442 (1204)
T 3a6p_A 364 -SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ 442 (1204)
T ss_dssp -CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred -cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH
Confidence 4544444444444344332 134667888888887 44332111 134666
Q ss_pred HHHHHHHHHHhhcHHhHHhhHHHHHhhccC-------------------------CChhhHHHHHHHHHHHHhhCchhh-
Q 000050 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL- 1493 (2622)
Q Consensus 1440 a~~al~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~la~~~p~~l- 1493 (2622)
..+.++.++...+..++..+.+.+.+.+.+ ..|....+....++++++......
T Consensus 443 ~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e 522 (1204)
T 3a6p_A 443 QGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN 522 (1204)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777788887777666666666666443321 235555555666666665432211
Q ss_pred hhhhh-hhHHHHhhhh---cCCCHHHHHHHHHHHHHHhhhcCC-h-hHHhHHHHHHhhcCCCCh-hHHHHHHHHHhcccc
Q 000050 1494 SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFV 1566 (2622)
Q Consensus 1494 ~~~L~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ilp~Ll~~l~d~~~-~~r~al~~L~~~~~~ 1566 (2622)
..+++ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+
T Consensus 523 ~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~------------ 590 (1204)
T 3a6p_A 523 REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK------------ 590 (1204)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT------------
T ss_pred cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc------------
Confidence 12333 2445555543 446899999999999999887652 3 345555555555433110 000
Q ss_pred ccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCC---HHHHHHHHHHH
Q 000050 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAI 1643 (2622)
Q Consensus 1567 ~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~vR~~a~~aL 1643 (2622)
.. -.+.+.++|..|+..+..+|... ++.+.||++.+...+...+.... ..-+..-..++
T Consensus 591 ---~~-------------~~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal 652 (1204)
T 3a6p_A 591 ---AP-------------RTRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEAL 652 (1204)
T ss_dssp ---SC-------------CCHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHH
T ss_pred ---cc-------------ccHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHH
Confidence 00 00012478999999999999865 35789999999999988886443 56667777888
Q ss_pred HHHHhhhCCC-----CchhhHHHHHHHhhh
Q 000050 1644 GSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2622)
Q Consensus 1644 ~~L~~~~g~~-----~~~~ll~~Ll~~L~~ 1668 (2622)
+.++..+++. ++..+++.+++.+.+
T Consensus 653 ~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 653 VLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 8886655543 355566666665543
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.05 E-value=7.8e-06 Score=111.09 Aligned_cols=261 Identities=14% Similarity=0.145 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCC
Q 000050 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~ 1936 (2622)
..+|..|+-.+|.+..++.+ . .+.+.|...+.+.+...|..|+.+||.+.-..|.. +...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--I----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--H----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888888899887655543 1 23444455556667778888888998775444432 4455555444 3557
Q ss_pred hhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccC
Q 000050 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L-~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2622)
.++|..++.+||.+. .+.. ..++.+.+.| .+.++.+|..++-+++--+...|.. ..+..|+..+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 789999999999763 2221 1223333333 4789999999888777554434431 2233333333221
Q ss_pred CchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHh-CCChhhhHhhhHHHHHHhc-CCCCHHHHHH
Q 000050 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2622)
Q Consensus 2016 ~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~-g~~l~~~l~~il~~Ll~~l-~~~~~~vr~~ 2093 (2622)
.. ...+..|+-+|+.+. |. +..++.++..+ .+.++.+|..
T Consensus 590 ~~--------------------------------d~VRraAViaLGlI~~g~------~e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SN--------------------------------DDVRRAAVIALGFVLLRD------YTTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SC--------------------------------HHHHHHHHHHHHHHTSSS------CSSHHHHTTTGGGCSCHHHHHH
T ss_pred Cc--------------------------------HHHHHHHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHH
Confidence 11 011223444444432 33 23456666655 5678999999
Q ss_pred HHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC--CChhHHH
Q 000050 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2622)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d--~d~~V~~ 2171 (2622)
+..+++.+....+ ...++..|.....|.+..||+.|+.++|.+...+.....+.+.++++.|.....| .|..++-
T Consensus 632 AalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999988754332 3456666777778999999999999999998877777778889999999988865 4566777
Q ss_pred HHHHHHHHH
Q 000050 2172 AAWEALSRV 2180 (2622)
Q Consensus 2172 ~a~~aL~~l 2180 (2622)
.+.-|.+-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.97 E-value=1.3e-08 Score=118.49 Aligned_cols=189 Identities=19% Similarity=0.205 Sum_probs=153.7
Q ss_pred chhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh
Q 000050 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2622)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l 1493 (2622)
+.++.....+.++..+.|+++.||..|..++..+. ....+|.+++.+.++++.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG-------DERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC-------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34455678899999999999999999999988762 23568889999999999999999999988742
Q ss_pred hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChh
Q 000050 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2622)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~ 1572 (2622)
+..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..+.... .
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT------C-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------C-
Confidence 3567888889999999999999999999864 2467888888899998888 5666665321 1
Q ss_pred hhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1573 ~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
...++.|...+.|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2467888889999999999999999998732 347788888889999999999999998753
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.94 E-value=2e-08 Score=117.94 Aligned_cols=185 Identities=19% Similarity=0.214 Sum_probs=127.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ 1499 (2622)
..++.++..+.|+++.+|..+..++..+. ....+|.+++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-------DERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 45777888889999999999888887662 24567888888888889999999998887642 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHH
Q 000050 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2622)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~ 1578 (2622)
.++.+.+.++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..+.... . ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~---~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D---ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------C---GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------C---HHHH
Confidence 66778888899999999999999988864 2355667777777776666 4455544311 0 1245
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000050 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1579 p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
+.|...++|.++.+|..+...++.+.. +..++.+...+.|+++.||..|..+|+.+...
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 566666666677777777777666522 23556666666666777777777777665543
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=5.3e-06 Score=110.62 Aligned_cols=474 Identities=13% Similarity=0.099 Sum_probs=286.7
Q ss_pred HHhcCCCCCCChHhHHHHhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHH
Q 000050 1121 WDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2622)
Q Consensus 1121 w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~~la~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~ 1198 (2622)
....++.+++ +.-|+.++. .....+|..+--+++...+.+++.+...+....+........ +..-.--..+.
T Consensus 160 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~-----~~~~~~~~~~~ 233 (778)
T 3opb_A 160 LNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEI-----DVGNDPLSIIV 233 (778)
T ss_dssp HHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSCHHHHHH
T ss_pred HHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhcc-----CCCCccHHHHH
Confidence 3445566654 556666664 578899999999998888888877777666666543211100 00011122333
Q ss_pred HHHHHhhhh--------hCCCChhHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHhccc-h----hhhhHHHHHHHhcC
Q 000050 1199 LALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-N----VSLLFPIFENYLNK 1265 (2622)
Q Consensus 1199 ~al~~~~~~--------~~~~~~~~i~~~li~~~l~d~~~~VR~~a~~a~~~~i~~~g~~-~----~~~llp~~~~~l~~ 1265 (2622)
.++..+.+. |-.+. +.+.+....-..++..+..++++.+... +..+ . .+..+|.+++.+..
T Consensus 234 ~~l~~lfPi~p~~~s~lfl~e~---~~~~l~~~~~~~~~~~~~~a~L~lLsaA---Ci~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 234 KTLSELYPSLTTLCSEIFLTKG---LSKLFKKRVFEEQDLQFTKELLRLLSSA---CIDETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHTTTTHHHHHHHHSTTT---HHHHHHHHHHSSCCHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCHHHHHHHHcccc---HHHHHHHHHhcccchHHHHHHHHHHHHH---hCCcHHHHHHHHhHHHHHHHHhcc
Confidence 333333332 22222 2222322222346666766666665432 1111 2 23344555555432
Q ss_pred CCCChhhhhhhhhHHHHHHHHHhhhhccCCcchHHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhh--hccc---hHHHHH
Q 000050 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVS 1340 (2622)
Q Consensus 1266 ~~~~~~~~~~vr~~~~~~~~~la~~l~~~~~~v~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~--~~~~---~~~~i~ 1340 (2622)
+.+|..+...+..+...-...+..+..+.+.+...+.++..+.|..+.+.|.-+... +++. .+..+.
T Consensus 308 --------~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~ 379 (778)
T 3opb_A 308 --------EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTE 379 (778)
T ss_dssp --------GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHH
Confidence 355665555555555433334556788999999999998766677788887655321 1111 245567
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCcc----------------------------------------chhhhcHH
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS----------------------------------------SLKKYGIA 1380 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~----------------------------------------~l~~~~i~ 1380 (2622)
.|++.+....+...-.++...|+.+....... .+...+++
T Consensus 380 ~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI 459 (778)
T 3opb_A 380 ILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI 459 (778)
T ss_dssp HHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH
Confidence 77777764344455666666666666532210 00112567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh
Q 000050 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG 1455 (2622)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~ 1455 (2622)
+.|...+.+. ++..|+.++.++..++... .....+. ..++.++..+.+.... +|..|..++..+.....+..
T Consensus 460 p~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 460 SFLKREMHNL-SPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 7777777776 7899999999999998542 2233332 5788999998876544 89999999988876554332
Q ss_pred ------HHhhHHHHHhhccC-CCh-------------hhHHHHHHHHHHHHhhCc---hhhhh-hhh--hhHHHHhhhhc
Q 000050 1456 ------VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLT 1509 (2622)
Q Consensus 1456 ------v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~la~~~p---~~l~~-~L~--~ivp~L~~~L~ 1509 (2622)
....+|+|++.|.. +.- ..+..|+.+|.+++.... +.... -+. ..+|.+.+++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 13678999988872 221 227789999999998652 22222 232 48899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCChhH--HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcC
Q 000050 1510 DTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2622)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d 1587 (2622)
+.+..||.+|++++.+++.. ++. +.+ ....+ +.-..-++.+...++.
T Consensus 617 s~n~~VrrAA~elI~NL~~~---~e~i~~k~-------~~~~~---------------------~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSH---PLTIAAKF-------FNLEN---------------------PQSLRNFNILVKLLQL 665 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTS---GGGTGGGT-------SCCSS---------------------HHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHHhCC---cHHHHHHH-------HhhcC---------------------chhhccHHHHHHHHcC
Confidence 99999999999999999852 221 111 00000 1101124566677777
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh
Q 000050 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM 1650 (2622)
Q Consensus 1588 ~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~vR~~a~~aL~~L~~~~ 1650 (2622)
.+.++|+.|+.++.++... .+......+ +..++.+...+.+ +++++|..++.++..++...
T Consensus 666 ~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 8899999999999988642 111111111 2467777777777 89999999999999999743
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.92 E-value=3.7e-09 Score=146.13 Aligned_cols=220 Identities=14% Similarity=0.047 Sum_probs=118.0
Q ss_pred hhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000050 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2622)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~ 2001 (2622)
..++|++.. |++++++.|..||.+|++++.......+.-+...+.+.+..++.|++.+||.+|+.+|..++...|....
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467777765 8899999999999999999864322222222234455667789999999999999999999887777655
Q ss_pred hh-----hHHHHHHhcccCCchhHHHHHHHHHHhhhccccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhH-hhh
Q 000050 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTI 2075 (2622)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~aL~~L~~il~~~~~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l-~~i 2075 (2622)
+. ++|.|+..|+.......................++.+.+ ....++.+|++.....+.... ...
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~lL~~L~e~s~~~~~~v~~~~~ 183 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITG---------SLLVLIGLLALARDEIHEAVATKQT 183 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHTCHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHhccc
Confidence 43 677777666431110000000000000000000000000 112344444443222222111 345
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHhhhccC-------hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHH-Hhhcc
Q 000050 2076 LPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF-YKNSK 2144 (2622)
Q Consensus 2076 l~~Ll~~l~---~~~~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l-~~~~~ 2144 (2622)
+|.++..+. ....+++..+..|+..+...-. .++...++..++...++.++. |..++..+..+ +....
T Consensus 184 l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~~~ 262 (684)
T 4gmo_A 184 ILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSLQW 262 (684)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhhhh
Confidence 666666652 2346789999999887765321 122223445555544454444 45555555544 44444
Q ss_pred ccccccHH
Q 000050 2145 LYLVDEAP 2152 (2622)
Q Consensus 2145 ~~l~~~~~ 2152 (2622)
.+++.+..
T Consensus 263 ~d~s~~~~ 270 (684)
T 4gmo_A 263 MDHSPGKD 270 (684)
T ss_dssp BTTBCCGG
T ss_pred hhcchhhH
Confidence 55555443
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.88 E-value=1e-07 Score=99.65 Aligned_cols=215 Identities=18% Similarity=0.291 Sum_probs=165.7
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccch
Q 000050 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2622)
Q Consensus 2111 ~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2622)
.+++..+...+.|+-|.||..|+..+..+.+..+ .....++..|+.++. +..-...+....+++.+....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888989999999999999999887543 344566777777755 444455555566666654322
Q ss_pred hhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000050 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2622)
Q Consensus 2190 ~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v 2269 (2622)
|+.+.+++|++.....-|++..|.+...+|+.+....+ ..+..
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~~-- 144 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMAS-- 144 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHHH--
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHHH--
Confidence 34456788889888888999999999999999997765 33333
Q ss_pred hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhh
Q 000050 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2622)
Q Consensus 2270 ~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ 2349 (2622)
+..-+...+.+. +..-|.+++..++.++......+.||+|.|. ..|.|.|+-||.+|..+|++++...|.+.+
T Consensus 145 --v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~----aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 145 --IVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRII----NLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp --HHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH----GGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred --HHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHH----HHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 333345556654 6778999999999888776667778888765 478899999999999999999999998999
Q ss_pred HHHHHHHhhhcCCHhHHHHHHHHHHHHHh
Q 000050 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2622)
Q Consensus 2350 ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2622)
.+...++.+++++..++..+-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888877653
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.87 E-value=2.8e-05 Score=103.82 Aligned_cols=554 Identities=13% Similarity=0.099 Sum_probs=293.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 1456 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v- 1456 (2622)
.++..++..+...++. ...--+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+.....+..+...-
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 5666666666533344 3334444555555555544433 22222222 23456778998887776666555543322
Q ss_pred --HhhHHHHH-hhccCCChhhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhh-cCCCHHHHHHHHHHHHHHhhhc
Q 000050 1457 --KLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1457 --~~ilp~Ll-~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
..++..++ +.=.+..-..-..++.++.++.-..|.....-+ ....+.+.+.+ ......+..++.+.|...+..-
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 23333222 110111122233334444444333443322211 23455555555 3345666677766666655322
Q ss_pred CChh--HHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhc
Q 000050 1531 KNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2622)
Q Consensus 1531 ~~~~--i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~ 1607 (2622)
..++ .+..++.|...+.+ ..+| .|+-.|.+..........+...+.+.+.+.+.+...+.+..|.+.+..+.-.
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 1122 26677888877765 3445 3444444422222222345566888899999887766788888888877431
Q ss_pred CCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh-hhcCChHHHHHHHH
Q 000050 1608 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL-KSDNSNVERSGAAQ 1680 (2622)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~-----~~~~ll~~Ll~~L-~~~~~~~~r~~a~~ 1680 (2622)
.+.++....-+.+++.|.+.+.+ .+..+-..+...|+.+....... .+..+.+..-... ..+...... ....
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11111111224567778888874 56677788888888887754321 1112211111100 000000000 0001
Q ss_pred HHHH-HHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhh-H-HhHHHHHHhhcCCCChH---HH
Q 000050 1681 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-L-QQVLPAILDGLADENES---VR 1754 (2622)
Q Consensus 1681 ~L~~-i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~-l-~~ii~~ll~~L~d~~~~---VR 1754 (2622)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..- ..... + ...+++++..+....+. +|
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~--~~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSK--NFIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG--GGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 1111 1111111 357888889898999999999999999998542 22222 2 23788888888876543 78
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHH
Q 000050 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2622)
Q Consensus 1755 ~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~ 1834 (2622)
..|..++..+.....+.. +++ . .. +...++.++.-+.... +.+.. .
T Consensus 519 ~~AA~ALArLlis~np~~---~f~--------~-~~----~~~aI~pLv~LL~~~~-------~~~~~-~---------- 564 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGL---IFK--------K-YS----ALNAIPFLFELLPRST-------PVDDN-P---------- 564 (778)
T ss_dssp HHHHHHHHHHHHTSCHHH---HSS--------S-SC----STTHHHHHHHTSCCSS-------SCSSC-C----------
T ss_pred HHHHHHHHHHHhcCCHHH---HcC--------C-Cc----cccchHHHHHHcCCCC-------Ccccc-c----------
Confidence 888888887764322110 000 0 00 0012222221111000 00000 0
Q ss_pred HHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhCh---hhH-HHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000050 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2622)
Q Consensus 1835 ~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p---~~l-~~~l~--~ll~~L~~~L~s~~~~~R~~A~~~ 1908 (2622)
++ .+......-+..|+.+|..++.... +.. ..++. ..++.+...+.+.+..+|..|+.+
T Consensus 565 --------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 565 --------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred --------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0000111235567777777877541 222 33454 478889999999999999999999
Q ss_pred HHHHHHHhcc---chh----hh---HHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhH--HhHHHHHHHHhcC
Q 000050 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2622)
Q Consensus 1909 L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d 1976 (2622)
++.++..-.. .+. +. =++.|...+...+.++|.+++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999863321 221 12 2678888888899999999999998864322 22112222 3466777777777
Q ss_pred --CcHHHHHHHHHHHHHHHH
Q 000050 1977 --SILEVRESAGLAFSTLFK 1994 (2622)
Q Consensus 1977 --~d~~VR~~A~~al~~l~~ 1994 (2622)
.++++|..++.++..|.+
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999976
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.82 E-value=2.3e-07 Score=112.12 Aligned_cols=237 Identities=19% Similarity=0.125 Sum_probs=175.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2622)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-+...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 466777888877 6899999999999988654422222222 589999999999999999999999998875422221
Q ss_pred -H-HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 -V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 -v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+ ...+|.++..+.+++..++..++.+|+.++...+...... -...+|.+.+++.++++.||..|+++|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 3578999999999999999999999999997555432211 2468899999999999999999999999998532
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
+... ..+. -..++|.+...+.+.++.+|..++.++++++.. .+..
T Consensus 160 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAI---------------------KAIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHH---------------------HHHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHH---------------------HHHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 1110 0000 013567777777788889999999999998862 2111
Q ss_pred ccch-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
.... -...++.+.+.+.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2357899999999999999999999999999865544
No 69
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.81 E-value=7.5e-06 Score=115.07 Aligned_cols=764 Identities=13% Similarity=0.107 Sum_probs=382.8
Q ss_pred ccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhcc----CCChhhHHHHHHHHH--HH
Q 000050 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AM 1485 (2622)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~--~l 1485 (2622)
+.+.+.-..++..++......-..||..|+.++..++..++. ....++|.+++.|+ +.+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 346666778888888888888999999999999999988743 45677888887764 456677788888774 44
Q ss_pred HhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH-----HhHHHHHHhhcCCCChhHHHHHHHH
Q 000050 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2622)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~ilp~Ll~~l~d~~~~~r~al~~L 1560 (2622)
..... .--..++.+++.++++....+|.|+..+..+...+...+..|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~-~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLM-TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGG-GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHh-cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 33222 12244678899999988878899988888777777765543321 1111 22222222111111110
Q ss_pred Hhc--cccccCChhhhhhHHHHHHhhh-cCCC--HHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHH
Q 000050 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2622)
Q Consensus 1561 ~~~--~~~~~~~~~~l~~i~p~L~~~l-~d~~--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~v 1635 (2622)
-.. .-... -...+..+...+.... ++.. |+....++..+-++.... -.|+-+.++..+.+.+.+++|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~-----d~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNL-----ESKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCS-----SCCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0011122332333333 3345 888888777755554332 13456789999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCC-----CchhhHHH--HHHHhh----hcCChHHHHHHHHHHHHHHHHhch-h-HHH-h-----
Q 000050 1636 RSVAARAIGSLIRGMGEE-----NFPDLVSW--LLDALK----SDNSNVERSGAAQGLSEVLAALGT-V-YFE-H----- 1696 (2622)
Q Consensus 1636 R~~a~~aL~~L~~~~g~~-----~~~~ll~~--Ll~~L~----~~~~~~~r~~a~~~L~~i~~~~g~-~-~l~-~----- 1696 (2622)
|..|..++..+....... ....+... .-..+. .+...... ...++ ..... . +++ .
T Consensus 353 R~~a~~~l~~il~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~-----~~~~~-~~~~~~~yfid~~~~~Gw 426 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKT-----FTEEM-NNFDNPKYFIDLRAYVGW 426 (997)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHH-----HHHHH-SCCSSCCCBCCSCCCSBT
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHH-----HHHHH-hcccCCccceeCCCCCeE
Confidence 999999998888863210 00000000 000000 00000000 00000 00000 0 000 0
Q ss_pred Hh-HHHHHhccC--CChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHH----HHhh
Q 000050 1697 IL-PDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV----EHYA 1769 (2622)
Q Consensus 1697 ll-p~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv----~~~~ 1769 (2622)
+. |.-+..... +.-+..+.--.++..+..... ..++.+++..+.+- ++..+.-+..-...+..++ .+++
T Consensus 427 l~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~---~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~ 502 (997)
T 1vsy_5 427 LCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLT---REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFC 502 (997)
T ss_dssp TBCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCC---HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTC
T ss_pred eeeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcC---HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccc
Confidence 00 000000000 000011111111222222122 23455555554322 1111111223333334444 3456
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHH
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L 1849 (2622)
...++.+.|.++....|++-.-...+++.++.++.... .+
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK-----~w----------------------------------- 542 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSK-----FM----------------------------------- 542 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCS-----SC-----------------------------------
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccC-----CC-----------------------------------
Confidence 66666777777665555443344455555555532100 00
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 000050 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928 (2622)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~-s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L 1928 (2622)
..........-+.|.+-+.+. +-.++....-..|+.-+....+++-.+.++..+
T Consensus 543 -------------------------~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l 597 (997)
T 1vsy_5 543 -------------------------SVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHF 597 (997)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHH
Confidence 011122233334444555555 344444444444555555555555556666655
Q ss_pred hh--h-c--CCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000050 1929 SR--G-L--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2622)
Q Consensus 1929 ~~--~-L--~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ 2003 (2622)
.. . + .+...-....-...|..++...+-. ... ...++..+. +..+...||++....+..+....-......
T Consensus 598 ~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~ 673 (997)
T 1vsy_5 598 INADGMFDRESDAATHQTSKIYMLRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD 673 (997)
T ss_dssp TCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 32 1 1 1111111111222333333333211 111 233333333 777889999999988888865532111111
Q ss_pred hHHHHHHhcccC---------CchhHHHHHHHHHHhhh---ccccccchhhhhhcCCCchH----HHHHHHHHHHHhCCC
Q 000050 2004 IVPTLLHALEDD---------QTSDTALDGLKQILSVR---TTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG 2067 (2622)
Q Consensus 2004 ilp~Ll~~L~~~---------~~~~~aL~~L~~il~~~---~~~ilp~Lip~L~~~~~~~~----~~~aL~sLa~~~g~~ 2067 (2622)
+..+++.-... .........+..++..- ...+- ...|. ...... ....+..|...++..
T Consensus 674 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~ 748 (997)
T 1vsy_5 674 -PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGP 748 (997)
T ss_dssp -HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGG
T ss_pred -HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCC
Confidence 12233221111 00122222233322110 00000 00000 000011 123444555555554
Q ss_pred ----hhhhHhh-hHHHHHHhcCCCCH-HHHHH-HHHHHHHhhhc-cChhcHHHHHHHHHhhcC-CCChhHHHHHHHHHHH
Q 000050 2068 ----LNFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLV-IDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGY 2138 (2622)
Q Consensus 2068 ----l~~~l~~-il~~Ll~~l~~~~~-~vr~~-a~~al~~l~~~-~~~~~l~~ll~~Ll~~l~-d~~~~vR~~A~~~L~~ 2138 (2622)
+.++++. ++|.++.....++. ++... +..++..+... +..+.++.++..+.+..+ +.+| +|.+++..+..
T Consensus 749 ~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 749 NKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp GHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 7788887 88888777665544 55444 44455555332 244567778888877666 6789 99999999877
Q ss_pred H-HhhccccccccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CccchhhHHHHHHHHHhhchhhhhhhhcCCc
Q 000050 2139 F-YKNSKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGP 2215 (2622)
Q Consensus 2139 l-~~~~~~~l~~~~~~il~~L~~~l~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~ 2215 (2622)
+ +.+.-.--......++..++.+|.|+. .+||+.|..+|+.++... +......++..++..
T Consensus 828 ~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~---------------- 891 (997)
T 1vsy_5 828 FLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG---------------- 891 (997)
T ss_dssp HHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS----------------
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH----------------
Confidence 7 444322122334577888888999999 999999999999998765 322221222111110
Q ss_pred cccccCCCCcCchhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHH
Q 000050 2216 ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILST 2295 (2622)
Q Consensus 2216 ~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~ 2295 (2622)
+.-.+.. ...+.. .. . +...|-++...
T Consensus 892 -----~~~~~~~---------------~~~~~~-----------~~-~---------------------~~~~rH~aVLg 918 (997)
T 1vsy_5 892 -----LDVNKYT---------------SKERQK-----------LS-K---------------------TDIKIHGNVLG 918 (997)
T ss_dssp -----STTTSSC---------------HHHHHH-----------HH-H---------------------HCHHHHHHHHH
T ss_pred -----Hhhcccc---------------cccccc-----------cc-h---------------------HHHHHHHHHHH
Confidence 0000000 000000 00 0 00245677777
Q ss_pred HHHHHHhcCCCc--cCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 000050 2296 LSIIIRKGGIAL--KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2622)
Q Consensus 2296 L~~L~~~~~~~l--~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2622)
|+.++...|..+ -+++|++...+.+...|+.+ ++..+-++|+..-+
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 888888888776 67999999888888888654 99999999998855
No 70
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.80 E-value=1.1e-07 Score=115.11 Aligned_cols=231 Identities=16% Similarity=0.122 Sum_probs=168.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2622)
.++.+.+.+.+. ++..|..|+.++..+...........+ ...+|.++..+.++++.+|..|..++..+...-+...
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677777776 688899999999655543222122222 2578999999999999999999999998876332221
Q ss_pred H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh-hhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+ ...+|.+++.+.++++.++..++.+|+.++...+.. ..-.-..++|.+.+++.++++.||..|+++|+.++..-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-- 169 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 357899999999999999999999999999876654 22223468899999999999999999999999998532
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCc
Q 000050 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2622)
Q Consensus 1533 ~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2622)
+... ..+. -..++|.|.+.+.+.++.++..++.++++++.. .+..
T Consensus 170 ~~~~---------------------~~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 214 (252)
T 4db8_A 170 NEQI---------------------QAVI------------DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 214 (252)
T ss_dssp HHHH---------------------HHHH------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hHHH---------------------HHHH------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHH
Confidence 1100 0000 012466777777777889999999999999852 2211
Q ss_pred ccchH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000050 1613 MIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2622)
Q Consensus 1613 l~~~l-~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~ 1647 (2622)
...+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 11222 247888999999999999999999998765
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.79 E-value=1.1e-07 Score=110.68 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=148.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
...+.+.+.+.+. ++.+|..|+.+++.+.. ...++.++..+.|+++.||..+..++..+. -.
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------~~ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------DE 75 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CG
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------CH
Confidence 4567778888887 89999999998876432 245678888999999999999999887762 23
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
..+|.+.+.+.++++.+|..++.+|+.+.. +..++.+..+++|+++.||..|+++|+.++. ..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 138 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 138 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HH
Confidence 567888899999999999999999998743 3567888889999999999999999999964 35
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhh
Q 000050 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 1605 (2622)
.++.|...+.|++..+| .++.++... . -...++.|...+++.++.+|..|...++.+..
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~------~---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEI------G---GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH------C---SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh------C---chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 67888899999998888 566666542 1 13467888888889999999999999987654
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.79 E-value=9.4e-08 Score=112.12 Aligned_cols=185 Identities=22% Similarity=0.194 Sum_probs=147.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
..++.+.+.+.+. ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+. ..
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------~~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------DE 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------CG
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------CH
Confidence 4567778888876 89999999988776432 245788888999999999999999988772 24
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHh
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2622)
..+|.+++.+.++++.+|..++..|+.+.. +..++.|.++++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 577888899999999999999999998743 3567888899999999999999999999864 24
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1538 ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
.++.|...+.|++..+| .++.+|.... -...++.|...+++.++.+|..|...++.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888888999999888 5666665321 135678888888899999999999999887653
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.78 E-value=2.5e-07 Score=121.88 Aligned_cols=339 Identities=14% Similarity=0.131 Sum_probs=221.4
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCch-hhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh-cCCh-hH
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-EI 1535 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~-~~~~-~i 1535 (2622)
.+|.++..|.++++..+..|+.+|..++...+. ...-.-...+|.|+++|.++++.++..|+++|..++.. -.+. .+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 367788888888888899999999988865443 11222356789999999999999999999999999874 1111 12
Q ss_pred --HhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh--------cC--------CCHHHHHH
Q 000050 1536 --ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKK 1595 (2622)
Q Consensus 1536 --~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l--------~d--------~~~~vr~~ 1595 (2622)
...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 356899999998 6666666 4555554422222222222236778888877 22 23566679
Q ss_pred HHHHHHHhhhhcCCCCcccchH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh-----------------
Q 000050 1596 AAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM----------------- 1650 (2622)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~vR~~a~~aL~~L~~~~----------------- 1650 (2622)
|+.++.+++.. ++...... +..++.|..++.+ ++..+.+.+..++..+....
T Consensus 163 a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 163 ATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 99999999863 21111111 2466666666653 34456666666666553110
Q ss_pred -----------------------------------CCC--CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch--
Q 000050 1651 -----------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-- 1691 (2622)
Q Consensus 1651 -----------------------------------g~~--~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~-- 1691 (2622)
|-+ .....++.+...|.+......+..++.+|+.++.+-+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 000 12345777778887766666777788889888764332
Q ss_pred -----hHH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCCC------hHHHHHH
Q 000050 1692 -----VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADEN------ESVRDAA 1757 (2622)
Q Consensus 1692 -----~~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~------~~VR~~a 1757 (2622)
..+ ...+|.+++.+.+++..+|..++.++..++.. ......+ ...+|++.+.|...+ +++...+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 112 35689999999999999999999999999863 2222222 458999999998753 3566677
Q ss_pred HHHHHHHHHHhhhc--hh--hhhHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000050 1758 LGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2622)
Q Consensus 1758 l~al~~lv~~~~~~--~i--~~llp~l~~~l~d~-~~rvR~~a~~ll~~l 1802 (2622)
+.++..++..-+.. .+ ...+|.+.+.+.+. +.+++..|..++..+
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 77777766432211 11 12567777777777 788888888777654
No 74
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.72 E-value=3.1e-06 Score=111.72 Aligned_cols=351 Identities=16% Similarity=0.087 Sum_probs=223.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccc---h--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhh---Ccc
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GIS 1372 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~---~--~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~l---g~~ 1372 (2622)
-++.|+..|.++++++|..++.+|..+.....+. . ...++.|++.|. +.+...+..|+.+|..++.+- ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~-s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHC-CCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3567888889999999999999987765322111 1 235677777665 456789999999999998641 222
Q ss_pred chhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHc------------------CCCCH
Q 000050 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2622)
Q Consensus 1373 ~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l------------------~D~~~ 1434 (2622)
.+.....++.|.+.+.+..+...++.+..++..|+.. ...-...+...+|.|+..+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 3334467888888888644677888888888888762 2111122344567766654 11257
Q ss_pred HHHHHHHHHHHHHHHhhcH--HhH---HhhHHHHHhhccC------CChhhHHHHHHHHHHHHhhCchhhh---------
Q 000050 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLS--------- 1494 (2622)
Q Consensus 1435 ~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~la~~~p~~l~--------- 1494 (2622)
.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+......++.+|.++++.......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999988653222 111 3455666666542 4556778899999888875321110
Q ss_pred ---------------h--hhhhhHHHHhhhhcC-CCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH
Q 000050 1495 ---------------Q--CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2622)
Q Consensus 1495 ---------------~--~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a 1556 (2622)
. .-+.+++.++.++.+ .++.++++|+.||..++..-. +.-.. .+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~-~~~~~---------------~~-- 348 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW-TYGRY---------------IR-- 348 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS-HHHHH---------------HH--
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc-cccHH---------------HH--
Confidence 0 123566778888853 578999999999999975211 10000 00
Q ss_pred HHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC-----
Q 000050 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP----- 1631 (2622)
Q Consensus 1557 l~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~----- 1631 (2622)
..+ .....+|.|.+.+...+.+++..|+.++.+++... ..+. ..-...+|.|.++|.+.
T Consensus 349 --~~v-----------~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~--~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 349 --SAL-----------RQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKE--LIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp --HHH-----------TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCHH--HHHHHHHHHHHHTSSSSSCSGG
T ss_pred --HHH-----------HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHHH--HHHhCCHHHHHHHhcCCccccc
Confidence 000 00235778888888888999999999999998742 2122 22456889999998865
Q ss_pred ---CHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhhhc-CChHHHHHHHHHHHHHHH
Q 000050 1632 ---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLA 1687 (2622)
Q Consensus 1632 ---~~~vR~~a~~aL~~L~~~~g~~----~~~~ll~~Ll~~L~~~-~~~~~r~~a~~~L~~i~~ 1687 (2622)
..+++..|..+|+.++..-.+. .-...+|.|...+.+. .+..++..++..|..+..
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 4577888888888877432111 1234667777777653 244455566666666543
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.72 E-value=1.4e-06 Score=114.93 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=220.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000050 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2622)
Q Consensus 1380 ~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2622)
++.+..++.+. ++..+..|+.++..++..-.. ....+ ...+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566677776 688899999999888743221 22122 257999999999999999999999999997642222 1
Q ss_pred H--HhhHHHHHhhcc-CCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhh--------cCC--------CHHHH
Q 000050 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2622)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2622)
+ ...+|.+++.|. +++...+..++.+|..++.+..... .-....+|.|++++ .++ ++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 456899999998 7788999999999999998722211 11237888899888 322 45666
Q ss_pred HHHHHHHHHHhhhcCCh-hH---HhHHHHHHhhcCC------CChh-HHHHHHHHHhcccc-------------------
Q 000050 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTFV------------------- 1566 (2622)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~ilp~Ll~~l~d------~~~~-~r~al~~L~~~~~~------------------- 1566 (2622)
..|+++|.+++..-.+. .+ ...+|.|...+.+ ++.. +..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999998751111 12 1567777776642 3322 22333322211000
Q ss_pred -----------c----------------------cCChhhhhhHHHHHHhhhcC-CCHHHHHHHHHHHHHhhhhcCCC-C
Q 000050 1567 -----------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2622)
Q Consensus 1567 -----------~----------------------~~~~~~l~~i~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2622)
. ....-....+++.+...+.+ .++.++..|+.++.+++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 00000012345666666654 46899999999999998631110 0
Q ss_pred cc-cchH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhhhcCC-----hHHHHHHHHH
Q 000050 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2622)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~--~~~~ll~~Ll~~L~~~~~-----~~~r~~a~~~ 1681 (2622)
.+ .... ...+|.|.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 124577888888876533 1234455666
Q ss_pred HHHHHHHhchh--HH--HhHhHHHHHhccCC-ChhhHHHHHHHHHHhh
Q 000050 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2622)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~l~~~-~~~vR~~al~~l~~L~ 1724 (2622)
++.++..-... .+ ...++.+.+.+.+. +..+++.+...+..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77766433221 12 35678888888888 8889998888887654
No 76
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.69 E-value=7.6e-07 Score=107.49 Aligned_cols=234 Identities=14% Similarity=0.151 Sum_probs=163.1
Q ss_pred hHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH-HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhh
Q 000050 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2622)
Q Consensus 1698 lp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l-~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~l 1776 (2622)
+|.+++.+.++++.+|..++.++..++...+....... ..+++.+++.+.++++.+|..+..++..+......
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE------ 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH------
Confidence 56777888888888888888888888765432222222 24788888888888888888777776654321000
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCC
Q 000050 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2622)
Q Consensus 1777 lp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~ 1856 (2622)
.+ ..+.+ ...++.+...+.+.
T Consensus 78 --------------~~--------------------------------------~~~~~-------~~~i~~l~~ll~~~ 98 (252)
T 4hxt_A 78 --------------AI--------------------------------------KAIVD-------AGGVEVLVKLLTST 98 (252)
T ss_dssp --------------HH--------------------------------------HHHHH-------TTHHHHHHHHTTCS
T ss_pred --------------HH--------------------------------------HHHHH-------CCCHHHHHHHHcCC
Confidence 00 00000 01233334445677
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc----hhhhHHHHHhhh
Q 000050 1857 SLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRG 1931 (2622)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~p~~l~~~l~-~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~ 1931 (2622)
+..+|..|+.+++.++...+.....+.. ..++.+++.+.+.++.+|..++.+|+.++...... .....+|.+...
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 7889999999999998655543333332 46888889999999999999999999997643221 235688889999
Q ss_pred cCCCChhhHHhHHHHHHHHHHhhChhhHHHh-HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000050 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2622)
Q Consensus 1932 L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~-l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g 1997 (2622)
+.++++.+|..++.+|+.+... .+...... -..+++.+...+.++++++|..|..+++.+....+
T Consensus 179 l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998652 22222222 25688999999999999999999999999976543
No 77
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.68 E-value=2.1e-06 Score=113.36 Aligned_cols=343 Identities=13% Similarity=0.089 Sum_probs=210.2
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh--cCCh-h
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-E 1534 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~ 1534 (2622)
-+|.+++.|.+++...+..|+..|..++...+..- .-.-...+|.|+++|.+.++.||..|+++|..++.. -.+. .
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 34455555555555555555555555554322211 111235679999999999999999999999999863 2222 1
Q ss_pred H--HhHHHHHHhhcCC-CChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh------------------cCCCHHH
Q 000050 1535 I--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAET 1592 (2622)
Q Consensus 1535 i--~~ilp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l------------------~d~~~~v 1592 (2622)
+ ...+|.|++.+.. ++..++ .+..+|.................+|.|.+.+ ...+.++
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 2 3578888888875 455554 3443443321111111112223355555543 1124689
Q ss_pred HHHHHHHHHHhhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCCC------------
Q 000050 1593 KKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGEE------------ 1653 (2622)
Q Consensus 1593 r~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~vR~~a~~aL~~L~~~~g~~------------ 1653 (2622)
+..|+.+|.+++..-.+ .+.+.. .+.+++.|...+. +++....+.|+.+|..|......+
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 99999999999863111 011111 1234445555543 355678888888888877543100
Q ss_pred -----------------CchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhch------hHH--HhHhHHHHHhccCC
Q 000050 1654 -----------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT------VYF--EHILPDIIRNCSHQ 1708 (2622)
Q Consensus 1654 -----------------~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~------~~l--~~llp~l~~~l~~~ 1708 (2622)
.-+..++.|+..+.......++..++.+|..++.+-+. ..+ +..+|.+++.+.++
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~ 367 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence 11245677788887655566777888888888753221 122 45689999999999
Q ss_pred ChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCC--------ChHHHHHHHHHHHHHHHHhhh--ch-hh-hh
Q 000050 1709 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYAT--TS-LP-LL 1776 (2622)
Q Consensus 1709 ~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~--------~~~VR~~al~al~~lv~~~~~--~~-i~-~l 1776 (2622)
+..+++.+..++..|+...... ...-...+|.+...|.+. .+++...++.++..++..-.. .. ++ ..
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 9999999999999999764421 122345899999999875 356778888888776632111 11 11 26
Q ss_pred HHHHhhccCCC--chHHHHHHHHHHHHHH
Q 000050 1777 LPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2622)
Q Consensus 1777 lp~l~~~l~d~--~~rvR~~a~~ll~~ll 1803 (2622)
+|.+...+.+. ..+++..|..++..+.
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 77777777664 6677888888887764
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.67 E-value=1.2e-07 Score=114.72 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=168.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccch-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC--ccch
Q 000050 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSL 1374 (2622)
Q Consensus 1302 ~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~-----~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg--~~~l 1374 (2622)
++.+...+.++++++|..++.++..++....+.. ...++.+++.|... +...|..|+.+|..++.+.. ...+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566777778888999999999976654422111 23566677666544 47899999999999886322 1122
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000050 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2622)
Q Consensus 1375 ~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2622)
.....++.+.+.+.+. ++..|..|+.+++.++..........+ ...+|.++..+.++++.||..+..++..+...-+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 2336788899999887 799999999999999765432212222 25899999999999999999999999988764322
Q ss_pred Hh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1454 QG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1454 ~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.. -...+|.+++.+.+++..++..++.+|+.++...+....... ..+++.+.+++.+.++.||..|+++|.+++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 21 156789999999999999999999999999976665433322 3588999999999999999999999998864
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.67 E-value=5.1e-05 Score=111.47 Aligned_cols=545 Identities=11% Similarity=0.068 Sum_probs=271.8
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000050 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2622)
Q Consensus 1589 ~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L-~d~~~~vR~~a~~aL~~L~~~----~g~~~~~~ll~~Ll 1663 (2622)
+...|+.|.+.+..+-... + +...+ ...+. .+.++.+|..|+..|...+.. +.++....+-..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p-~------~~~~~---~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC-P------ICVPC---GLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC-T------THHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc-h------HHHHH---HHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5677888888887765421 1 11111 12222 355788999888888887754 22222334444555
Q ss_pred HHhhhc------CChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCc--c-----
Q 000050 1664 DALKSD------NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--Q----- 1730 (2622)
Q Consensus 1664 ~~L~~~------~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~----- 1730 (2622)
+.+.+. .+..+|...++.++.++.....+.|+++++.+++.++. ++..++.++.+|..++..... .
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r 174 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQR 174 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 555432 34567888888899988877667788888888887765 556688888888888754211 0
Q ss_pred -------hhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhcc--CCCchHHHHHHHHHHHH
Q 000050 1731 -------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI--FNDNWRIRQSSVELLGD 1801 (2622)
Q Consensus 1731 -------f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l--~d~~~rvR~~a~~ll~~ 1801 (2622)
+..+++.+++.+...+.+ .+..+... -+.. ... ...+-.++..+++++..
T Consensus 175 ~~~l~~~l~~~~~~I~~~~~~iL~~---------------~~~~~~~~-----~~~~-~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 175 RRDIQQTLTQNMERIFSFLLNTLQE---------------NVNKYQQV-----KTDT-SQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH---------------HHHHHHHH-----TTCS-TTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcc-----cccc-cchhhhhhhHHHHHHHHHHHHH
Confidence 111111122222111110 00000000 0000 000 01123355555555554
Q ss_pred HHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC--hhhH
Q 000050 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT--PKTL 1879 (2622)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~--p~~l 1879 (2622)
++.-++ . ..+.+ ..+.++..++....+ ..+|.+|++++..++... +...
T Consensus 234 ~l~Wi~------------------~----~~i~~-----~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 234 YIDWVS------------------M----SHITA-----ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp TTTTSC------------------H----HHHHT-----TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHhccC------------------H----HHHHh-----ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 321100 0 00000 001244444444443 468999999999998744 3332
Q ss_pred HHHHH----HHHHHHHHHhc--C------CCHHHHHHHHHHHHHHHHHh-----------ccchhhhHHHHHhhhcCCCC
Q 000050 1880 KEIMP----VLMNTLISSLA--S------SSSERRQVAGRALGELVRKL-----------GERVLPSIIPILSRGLKDPS 1936 (2622)
Q Consensus 1880 ~~~l~----~ll~~L~~~L~--s------~~~~~R~~A~~~L~~lv~~~-----------~~~~l~~llp~L~~~L~d~~ 1936 (2622)
.+++. ..+..++.... + .+.+.+...++.+..+.... ....+..+++.+.....+++
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~ 364 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPS 364 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCcc
Confidence 22222 22333444431 1 11222222232222222110 11235678888888888887
Q ss_pred hhhHHhHHHHHHHHHHhh---ChhhHHHhHHhHHHHHHH---HhcCC-----------------cH-------HHHHHHH
Q 000050 1937 ASRRQGVCIGLSEVMASA---GKSQLLSFMDELIPTIRT---ALCDS-----------------IL-------EVRESAG 1986 (2622)
Q Consensus 1937 ~~vR~~a~~~L~~li~~~---~~~~l~~~l~~ll~~l~~---~L~d~-----------------d~-------~VR~~A~ 1986 (2622)
..+-..++.....+++.. ....+.+++..+++.+.. .+.-+ ++ +.|....
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~ 444 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHH
Confidence 777777775555454432 224466788888888733 22111 00 1233333
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhcccCCchhHHHHHHHHHHhhh-ccc-cccchhhhhhcCCCchHHHHHHHHHHHHh
Q 000050 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR-TTA-VLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2622)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~aL~~L~~il~~~-~~~-ilp~Lip~L~~~~~~~~~~~aL~sLa~~~ 2064 (2622)
..+..++...+...++.+.+.+...+.+.-.....-..+ ... ++. .....-+.... ......++.++.+..
T Consensus 445 d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~s~~~~~---~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 445 EVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCS----AVGTGEGSLCSVFSPSFVQ---WEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCC---------------------CCSCSSSHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccccc----ccccccccccCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 333333332222233333344433332210000000000 000 000 00000000000 000112333333321
Q ss_pred -CCChhhhHh-hhHHHHHHhc---CCCCHHHHHHHHHHHHHhhhccC--hhcHHHHHHHHHhhcCC------------CC
Q 000050 2065 -GPGLNFHLG-TILPALLSAM---GDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGD------------NQ 2125 (2622)
Q Consensus 2065 -g~~l~~~l~-~il~~Ll~~l---~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~d------------~~ 2125 (2622)
...-.++++ .+++.++..+ ..+++.+|...+.+++.+...+. ++.+..+++.++..+.+ .+
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 000012222 3455555553 34688899999999988876553 45688888888877654 23
Q ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcCc-----cchhhHHHHHH
Q 000050 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPK-----EVQPSYIKVIR 2197 (2622)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d---~~V~~~a~~aL~~l~~~~~~-----~~l~~lv~~l~ 2197 (2622)
.++|.+|+.++..+++..+..+.+|++++...+-..+.... ..-+..-.+++..+....+. .++..++.++.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999998888776333 44455566777766544332 22455666665
Q ss_pred HHHh
Q 000050 2198 DAIS 2201 (2622)
Q Consensus 2198 ~~l~ 2201 (2622)
+.+.
T Consensus 678 ~~w~ 681 (1204)
T 3a6p_A 678 SIWL 681 (1204)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5544
No 80
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.61 E-value=4.2e-07 Score=111.23 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=163.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhH
Q 000050 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2622)
Q Consensus 1338 ~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~ 1417 (2622)
+.+.|+..|.+. +|+.|.||+.||..+++..|...-+. +..|. ..|+..+..++- +.|.+|
T Consensus 175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~------------~~~N~---DLAvRLLCVLAL---DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVDS---KLFSKIYEILVT---DKFNDF 235 (800)
T ss_dssp TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CC------------CCCCT---THHHHHHHHHHH---BCCBBC
T ss_pred HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCcee------------ccccH---HHHHHHHHHHHh---cccccc
Confidence 556666776654 59999999999999998876533221 11111 344444444432 234454
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000050 1418 VIQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2622)
Q Consensus 1418 v~~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~ 1496 (2622)
+ +|. ..-||++|+++++.+ ..+++. -.++-.++..+..+.|.+|+|++..|..+ ..+...
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 3 343 357999999999999 888877 46666777777889999999999999877 222222
Q ss_pred hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhh
Q 000050 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2622)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~ 1576 (2622)
++.+++.+...|+|.+.+||..|+.+|..++ ....+..++..+.+.+.+-++- .++...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDL------------------SASTgS 355 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELI------------------SVSKTS 355 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSC------------------CTTHHH
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhccc------------------chhhHH
Confidence 8999999999999999999999999999998 3356777888877776543210 011111
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000050 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2622)
Q Consensus 1577 i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~ 1656 (2622)
++ +.++.++..-.. .... +.++|.|...+.++...||.++.+++.++. ..
T Consensus 356 VM-------------------dLLAkL~s~p~~-a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~ 405 (800)
T 3oc3_A 356 NL-------------------SLLTKIYRENPE-LSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EE 405 (800)
T ss_dssp HH-------------------HHHHHHHHHCTT-CCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CH
T ss_pred HH-------------------HHHHHHHcCCcc-cccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hh
Confidence 22 223333332111 0111 268888888999999999999999887665 23
Q ss_pred hhHHHHHHHhhhcCChHHH
Q 000050 1657 DLVSWLLDALKSDNSNVER 1675 (2622)
Q Consensus 1657 ~ll~~Ll~~L~~~~~~~~r 1675 (2622)
.++..+++.+-=+....++
T Consensus 406 ~~LRLIFQNILLE~neeIl 424 (800)
T 3oc3_A 406 SIDFLVAEVVLIEEKDEIR 424 (800)
T ss_dssp HHHHHHHHHHHHCSCHHHH
T ss_pred hHHHHHHHHHHhCCcHHHH
Confidence 4555555555444434333
No 81
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.58 E-value=9.7e-06 Score=113.93 Aligned_cols=692 Identities=11% Similarity=0.063 Sum_probs=351.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHhccc--hhh
Q 000050 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG--ELVRKLGER--VLP 1922 (2622)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~~L~s~~~~~R~~A~~~L~--~lv~~~~~~--~l~ 1922 (2622)
..+...-...-..||..|-.++.......+.....++|.+++.+-..+.+.+.+.-..|..+|. .+...+..+ ..+
T Consensus 136 ~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~~~ 215 (997)
T 1vsy_5 136 VDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKDIG 215 (997)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHHHH
Confidence 3333333445678999999999999998888888888888888877666656555555666554 444444333 567
Q ss_pred hHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhCh-------------------------------------hhHHHhHHh
Q 000050 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-------------------------------------SQLLSFMDE 1965 (2622)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~-------------------------------------~~l~~~l~~ 1965 (2622)
.+++.+.++...+.+++..-+-.....++..... ......+..
T Consensus 216 ~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~ 295 (997)
T 1vsy_5 216 RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVD 295 (997)
T ss_dssp HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888876655666554333222333321110 001111123
Q ss_pred HHHHHHHHh-cCCc--HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHHHHHHHHhh-h--c----
Q 000050 1966 LIPTIRTAL-CDSI--LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSV-R--T---- 2033 (2622)
Q Consensus 1966 ll~~l~~~L-~d~d--~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~-~--~---- 2033 (2622)
+...+.... .+.+ ......++..+-.+........-.+++..+++.+.++.. +..++.++..++.. + +
T Consensus 296 L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~~~~ 375 (997)
T 1vsy_5 296 LQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSDYEY 375 (997)
T ss_dssp HHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 333333333 1223 444444444433333222222234556666666665543 35566555554432 0 0
Q ss_pred --cccccc-hhh-hhh--cCCCchHHHHHHHHHHHHhCCC-hh--h-hHhhhH-HHHHHhcC------CCCHHHHHHHHH
Q 000050 2034 --TAVLPH-ILP-KLV--HLPLSAFNAHALGALAEVAGPG-LN--F-HLGTIL-PALLSAMG------DDDMDVQSLAKE 2096 (2622)
Q Consensus 2034 --~~ilp~-Lip-~L~--~~~~~~~~~~aL~sLa~~~g~~-l~--~-~l~~il-~~Ll~~l~------~~~~~vr~~a~~ 2096 (2622)
+.+... ..| .+. ..+...+...-...+...-.+. +. + |.+-.. |.-+.... +-++..+.
T Consensus 376 d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~---- 451 (997)
T 1vsy_5 376 DITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELE---- 451 (997)
T ss_dssp CGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHH----
T ss_pred cHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHH----
Confidence 000000 000 000 0000011111111111100000 00 0 100000 00000000 11222211
Q ss_pred HHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHh----hccccccccHHHHHHHHHHHhcCCChhHHHH
Q 000050 2097 AAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK----NSKLYLVDEAPNMISTLIVLLSDSDSTTVAA 2172 (2622)
Q Consensus 2097 al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~----~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~ 2172 (2622)
++..+...++.+.+..++..+.+- ++++..-+..-+..+..+++ +.+.. .++.+.+.+-.++.|.|..-...
T Consensus 452 i~~~f~~~~~~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~~---~l~~l~~~~e~L~~~~dk~~qr~ 527 (997)
T 1vsy_5 452 VLKTAGHLLTREFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCEL---NMSDLFELCESYYNKDDKASMIM 527 (997)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCCC---CGGGHHHHHHHTCCSSCHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccchh---hHHHHHHHHHHHhccccHHHHHH
Confidence 223333334566677777766543 22222224445555555553 33332 34556666666778888888999
Q ss_pred HHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHc-cCCHHHHHHHHH
Q 000050 2173 AWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAELREQAAL 2251 (2622)
Q Consensus 2173 a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~-~~~~~~r~~aa~ 2251 (2622)
|.+.++.++.....-..... .+.-.-+.|.+...+. +-+++....-..
T Consensus 528 aaEi~aGll~gsK~w~~~~~-------------------------------~~~w~~l~p~l~~~l~~~lt~et~~~W~~ 576 (997)
T 1vsy_5 528 SVEIVAGLVCGSKFMSVSDL-------------------------------DKRDTFIENFLAKCLDYELNHDAFEIWST 576 (997)
T ss_dssp HHHHHHHHSSCCSSCCTTTH-------------------------------HHHHHHHHHHHHHHHSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHH-------------------------------HHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 99999998765432110000 0111235666667777 356776666677
Q ss_pred HHHHHHhhcChhhhhhhhhhhhHHHHHh-hc-CCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhCCCCHHH
Q 000050 2252 GLGELIEVTSEQSLKEFVIPITGPLIRI-IG-DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTV 2329 (2622)
Q Consensus 2252 ~L~~l~~~~~~~~l~p~v~~i~~~Li~~-l~-~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~L~d~~~~v 2329 (2622)
|+..+.....+..+.+.++-++. ++. +. ...+.-....-+..|..++...+-.+.. ...+...++ ++++...|
T Consensus 577 ~i~~~~~~~DprR~~~L~e~l~~--~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~V 651 (997)
T 1vsy_5 577 LAWWLPAVVDLRRSKTFFCHFIN--ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQV 651 (997)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHTC--CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHH--hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHH
Confidence 77777777665444433332200 000 00 0001111122344444444444433332 344555454 78889999
Q ss_pred HHHHHHHHHHHHhcc--c---ChhhH-------------------------HHHHHHhhhc---------CCH----h--
Q 000050 2330 RSSAALALGKLSALS--T---RVDPL-------------------------VGDLLSSLQV---------SDA----G-- 2364 (2622)
Q Consensus 2330 R~~Aa~aLg~L~~~~--~---~~~~l-------------------------l~~Ll~~l~~---------~d~----~-- 2364 (2622)
|...+..|..+.... | .++.+ +..+.+.+.. +.. .
T Consensus 652 Re~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~ 731 (997)
T 1vsy_5 652 RQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYF 731 (997)
T ss_dssp HHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHH
Confidence 999999998885433 2 11111 2222222210 000 0
Q ss_pred -HHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHHHHhhcCCCH-HHHHH-HHHHHHHHHhh-cCchHHHHHHHHHHhhcC
Q 000050 2365 -IREAILTALKGVLKHAGKSVSSAVKIR-VYSVLKDLVYHDDD-HVRVS-AASILGIMSQC-MEDGQLADLLQELLNLAS 2439 (2622)
Q Consensus 2365 -vr~~~l~AL~~vi~~~g~~~~~~~~~~-i~~~L~~~l~~~~~-~vr~~-aa~~Lg~L~~~-~~~~~~~~~l~~ll~~~~ 2439 (2622)
.-.+++.-|...+.........++... +++.+..+.+..++ +.... +..++..++.. .+++.+..++..+.....
T Consensus 732 ~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~ 811 (997)
T 1vsy_5 732 YRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNV 811 (997)
T ss_dssp HHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 011222222222211100001233333 44444444444443 45555 56677777544 344455556665544333
Q ss_pred -CCCchhhHhHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhH
Q 000050 2440 -SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVDI 2517 (2622)
Q Consensus 2440 -~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~ 2517 (2622)
+++| .|......+..+.-.+- -++...-...+.+.+.+.+.|.. .+||+.|..+++.++...... ....++
T Consensus 812 ~s~sW-~R~~~L~~lq~~~f~n~-f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~-----~~~~~l 884 (997)
T 1vsy_5 812 ALSSN-QTKLQLAFIQHFLSAEL-LQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE-----QPLLSL 884 (997)
T ss_dssp TSCSS-SHHHHHHHHHHHHHHHT-TTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH-----HHHHHH
T ss_pred cCCcH-HHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch-----hhHHHH
Confidence 5789 78644333333333222 12233344678899999999999 999999999999988653110 123355
Q ss_pred HHHHHhhcCC------------CCHHHHHHHHHHHHHHHhhCchhh--hhhHhhHHHHHHhhhcCCcchhhchhHHHHHH
Q 000050 2518 LASVVSALHD------------DSSEVRRRALSALKSVAKANPSAI--MVHVALFGPALAECLKDGSTPVRLAAERCAVH 2583 (2622)
Q Consensus 2518 l~~l~~~l~d------------~s~dvr~~a~~~l~~~a~~~~~~v--~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~ 2583 (2622)
+..+...... .+.-.|-.|+.+|+.+..-.|..+ .++++.++..|-.-..+ ..||+..+.+|+..
T Consensus 885 i~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~tvk~tlse 963 (997)
T 1vsy_5 885 IERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGNAAKNTISE 963 (997)
T ss_dssp HHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHH
T ss_pred HHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 5555554421 111467788899999999999887 67999999888777778 56799999999999
Q ss_pred Hhccccc
Q 000050 2584 AFQLTRG 2590 (2622)
Q Consensus 2584 ~~~~~~~ 2590 (2622)
--+.+++
T Consensus 964 FkrTH~D 970 (997)
T 1vsy_5 964 FKKVRAD 970 (997)
T ss_dssp HHHHTST
T ss_pred HHhccch
Confidence 8888874
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.58 E-value=5.5e-06 Score=107.07 Aligned_cols=339 Identities=12% Similarity=0.067 Sum_probs=205.8
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCC------------CHHHHHHHHHHHHHHh
Q 000050 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT------------HPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~------------~~~VR~aA~~aL~~l~ 1527 (2622)
+|.++..+.+.+.. ..+..|.++...+|.-....=...+|.|+++|++. ++++|..|.+||.+++
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 34444555443332 23445555655555311111256788888888753 2799999999999999
Q ss_pred hhcCChh--------------HHhHHHHHHhhcCCCC--hh-----HH--------HHHHHHHhccccccCChh-hhhhH
Q 000050 1528 SVIKNPE--------------IASLVPTLLMGLTDPN--DH-----TK--------YSLDILLQTTFVNTVDAP-SLALL 1577 (2622)
Q Consensus 1528 ~~~~~~~--------------i~~ilp~Ll~~l~d~~--~~-----~r--------~al~~L~~~~~~~~~~~~-~l~~i 1577 (2622)
..-++.. +....+.+++.+..+. .. ++ .|+.+|.+..+....... .-...
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~ 190 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 7654321 1222355555454331 00 21 355555543222111000 01234
Q ss_pred HHHHHhhhc-----------CCCHHHHHHHHHHHHHhhhhcCCCCcccch---HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1578 VPIVHRGLR-----------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1578 ~p~L~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~---l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
++.|.+.+. ..+..++..|+.+|.+++.. +. ..... ....+|.|..+|.+++++++..|+.+|
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~--~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG--DV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTT--CH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCC--Cc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555555552 12467899999999999863 21 11212 245689999999999999999999999
Q ss_pred HHHHhhhCCC---C--chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhc---hhHH--HhHhHHHHHhccCCCh---
Q 000050 1644 GSLIRGMGEE---N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG---TVYF--EHILPDIIRNCSHQRA--- 1710 (2622)
Q Consensus 1644 ~~L~~~~g~~---~--~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g---~~~l--~~llp~l~~~l~~~~~--- 1710 (2622)
+.++..-+++ . -...+|.|++.|....+...+..++.++..+..... .... ...+|.+++.+.+.+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 9997531111 1 135678888876554445567777777777765321 1121 4578888888876544
Q ss_pred -hhHHHHHHHHHHhhhh--hCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh--ch-hh-hhHHHHh
Q 000050 1711 -SVRDGYLTLFKYLPRS--LGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT--TS-LP-LLLPAVE 1781 (2622)
Q Consensus 1711 -~vR~~al~~l~~L~~~--~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~~--~~-i~-~llp~l~ 1781 (2622)
.+++.+..++..++.. .+......+ ...+|.++..|.+.+..+++.|..++..+...-.. .. ++ -.+|.|.
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 4888888899888863 122222222 23789999999999999999999999887632111 11 12 2688899
Q ss_pred hccCCCchHHHHHHHHHHHHHHH
Q 000050 1782 DGIFNDNWRIRQSSVELLGDLLF 1804 (2622)
Q Consensus 1782 ~~l~d~~~rvR~~a~~ll~~ll~ 1804 (2622)
+.+.+.+.++|..++..+..++.
T Consensus 428 ~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 428 NLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHc
Confidence 99988999999999999988863
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=2.3e-06 Score=100.44 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhH-HHH
Q 000050 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQ 1420 (2622)
Q Consensus 1349 ~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l----~~~~~~~~R~~al~al~~La~~~~~---~~~~~-v~~ 1420 (2622)
+.|+..|..|...|...+...+...+ ..++.+.+++ .++ |+.+-..++..+..+...+++ .+.+| ...
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 44788888888777776654322222 2233344443 355 888888899988888776653 36666 478
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~i 1500 (2622)
++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++|++|.+++..++.+.....-.. ...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~ 205 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKS 205 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccc
Confidence 999999999999999999999999888765544 4577888899999999999999999999886422221 335
Q ss_pred H---HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCCh
Q 000050 1501 V---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2622)
Q Consensus 1501 v---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2622)
+ |.+.+++.|++..||++|..|+..+-...++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6 88899999999999999999999988877653
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.55 E-value=9.7e-07 Score=108.14 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=143.9
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHH
Q 000050 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2622)
Q Consensus 1780 l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~ 1859 (2622)
+.+.+.+++|+.|..+++-+..++...+... .+++ ....+ ......+.....|.|..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~----------~~~~~-----~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDD----------NIQIY-----WRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCT-----TSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchh----------HHHHH-----HHHHHHHHHHhccchHH
Confidence 6678899999999999998888775422110 0000 00001 11222333456899999
Q ss_pred HHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhc
Q 000050 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2622)
Q Consensus 1860 VR~aA~~~l~~l~~~~p------~~l~~~l~~ll~~L~~~-L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1932 (2622)
|...+++++..++...+ ..+..++..+++.++.. +.+....+|..+..++..++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888875 7899999999999999888865432 345677788889
Q ss_pred CCCChhhHHhHHHHHHHHHHhhChhh--HHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000050 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2622)
Q Consensus 1933 ~d~~~~vR~~a~~~L~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~ 1998 (2622)
.+.+|.+|.+++.+|..++..+|... ..+.++.+++.+..++.|.|+.||++|..++..++..+|.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999877543 3456778888889999999999999999999999998885
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.52 E-value=3.3e-06 Score=109.07 Aligned_cols=309 Identities=11% Similarity=0.054 Sum_probs=199.2
Q ss_pred HhhHHHHHhhccCC------------ChhhHHHHHHHHHHHHhhCchhhhhh--------h---hhhHHHHhhhhcCCC-
Q 000050 1457 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQC--------L---PKIVPKLTEVLTDTH- 1512 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~~------------~w~~r~~a~~~L~~la~~~p~~l~~~--------L---~~ivp~L~~~L~D~~- 1512 (2622)
...+|.+++.|... +...+..|.++|.+++.+.|++.... | +...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 46788888877643 25788899999999999877654321 1 122244444444321
Q ss_pred -H-----HHHH-------HHHHHHHHHhhhcCChh-H--HhHHHHHHhhcC----------CC-ChhH-HHHHHHHHhcc
Q 000050 1513 -P-----KVQS-------AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2622)
Q Consensus 1513 -~-----~VR~-------aA~~aL~~l~~~~~~~~-i--~~ilp~Ll~~l~----------d~-~~~~-r~al~~L~~~~ 1564 (2622)
. .|++ .|+++|+.++..-.+.. + ...++.|...+. +. +..+ +.|..+|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1666 88999998875422221 1 345666666662 11 1222 34555554322
Q ss_pred ccccCChhh---hhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch--HhhhHHHHHHH-hcCCCHHHHHH
Q 000050 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2622)
Q Consensus 1565 ~~~~~~~~~---l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~-L~d~~~~vR~~ 1638 (2622)
+........ ....+|.|.+.+.+.+.+++..|+.+|.+++.. .+ ...... -...+|.|.++ +...++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 221101111 234689999999999999999999999998752 11 111111 12467888886 45678899999
Q ss_pred HHHHHHHHHhhhCC---CC--chhhHHHHHHHhhhcCCh---HHHHHHHHHHHHHHHH--hchh---HH--HhHhHHHHH
Q 000050 1639 AARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTV---YF--EHILPDIIR 1703 (2622)
Q Consensus 1639 a~~aL~~L~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~r~~a~~~L~~i~~~--~g~~---~l--~~llp~l~~ 1703 (2622)
++.+|+.++....+ .. ....+|.|.+.|.+.... ..+..++.+|..+... .+.+ .+ ...+|.+++
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 99999999873321 11 356788888888765432 3566677777777652 1222 11 356899999
Q ss_pred hccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
.+.+.+..+++.++.++..++.... +...++ ...+|++...+...++.+++.|..++..+..+-
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999974322 222333 247999999999999999999999999887543
No 86
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.50 E-value=2.1e-06 Score=100.51 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
...|.+..++.++++.+|..|..++..++..-+.. .+ ...+|.+++.|.++++.++..++.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 44567788889999999999999999987533222 11 367899999999999999999999999999765543222
Q ss_pred hh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhh
Q 000050 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l 1574 (2622)
.. ...+|.++.+++++++.||..|+++|+.++..- +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 22 468899999999999999999999999998532 1110 0000 0
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccc-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~ 1648 (2622)
...+|.|.+.+.+.+.+++..++.++++++.. .+..... .-...++.+.+++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777778878889999999999999863 1111111 123578999999999999999999999998753
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.50 E-value=2e-06 Score=105.39 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=159.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhcc-------chHHHHHHHHHHHhcC-------C--ChHHHHHHHHHHHH
Q 000050 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMKS-------D--KYGERRGAAFGLAG 1364 (2622)
Q Consensus 1301 i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~-------~~~~~i~~Ll~~L~~~-------~--~~~~r~~Aa~~L~~ 1364 (2622)
+++.|..-|-++..++|..|+-+|..+++..+. ...++.-.++..+.-+ + -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 889999999999999999999999999877642 1124455555555421 1 23789999999999
Q ss_pred HHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000050 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2622)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2622)
+ ..++.+ ..++..+...+... .|.+|++++.++.++.+.+ .. +..++|.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DLL----~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEFV----ED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGGC----CC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHHH----HH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777766 24555555555555 7999999999999982222 22 788899999999999999999999998
Q ss_pred HHHHHhhcHHhHHhhHHHHHhhccC-CChhhHHH-HHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHH
Q 000050 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQS-SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2622)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w~~r~~-a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2622)
.-++ .+..+..++..+++.|.+ ++-..-.+ .+.+|..+....+. ....|.++|.|+..+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 8776 455678888888887764 33333344 45567777765432 22346899999999999999999999999
Q ss_pred HHHHh
Q 000050 1523 LQQVG 1527 (2622)
Q Consensus 1523 L~~l~ 1527 (2622)
|..+.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 98776
No 88
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.45 E-value=1.9e-06 Score=100.84 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=139.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhhCc--cchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH-
Q 000050 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2622)
Q Consensus 1342 Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v- 1418 (2622)
.+..|..+++...|..|+.+|..++.+-.. ..+...+.++.+.+.+.+. ++..|..|+.+++.++...+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344444566678888888888888753221 1222336788899999887 799999999999998753332111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~ 1494 (2622)
...+|.++..+.++++.+|..|..++..+...-+... -...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 2478999999999999999999999999875433221 145789999999999999999999999999986554432
Q ss_pred hh-hhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q 000050 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2622)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2622)
.. -...++.|.+++.+.++.||+.|+++|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999999874
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.44 E-value=9.8e-06 Score=95.20 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=143.5
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCC
Q 000050 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2622)
Q Consensus 1778 p~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~ 1857 (2622)
+.+...+++.+|+.|..+++.+...+...+ ..+...+ +-++.-+.....|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~l-----Dll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSNS-----DLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHTH-----HHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHHH-----HHHHHHHHHHHhCCC
Confidence 455667788999999999988887653210 1122211 223333333457899
Q ss_pred HHHHHHHHHHHHHHHhhChh---hHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcC
Q 000050 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2622)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~p~---~l~~~-l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2622)
..|-..+++++..++....+ .+.++ ...++|.++..++++...+|..+...+..+....++ ..+++.+.++++
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999998764432 13333 578899999999999999999999998877765433 347777888999
Q ss_pred CCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh
Q 000050 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2622)
Q Consensus 1934 d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll---~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~ 2002 (2622)
+.++.+|.+++..++.++..+|... ...+ +.+..++.|+|..||++|..++..++...|.....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999988651 3356 88899999999999999999999999999986443
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.38 E-value=4.1e-06 Score=102.53 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.2
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHhhCchh-----hhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCC-----
Q 000050 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2622)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2622)
+-+.|.+++|..|..+++-+..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654432 2223556667778889999999999999999999876542
Q ss_pred ----hhHHhHHHHHHhh-cCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1533 ----~~i~~ilp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..+..++|.|+.. +.|+...++ .+++.+.. ++.... ....+++.+..++...++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346678888765 788887776 34554432 111111 2234678888899999999999999999998877
Q ss_pred cCCC-CcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000050 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2622)
Q Consensus 1607 ~~~~-~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~ 1653 (2622)
++.. -...+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 1234567778888999999999999999999999999999864
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.33 E-value=0.00012 Score=77.18 Aligned_cols=215 Identities=20% Similarity=0.175 Sum_probs=156.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhc
Q 000050 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2622)
Q Consensus 1299 ~~i~~~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2622)
+.+++.++..|.|.-+.||..+...+..+.....+-...++..++-.+.+++...--...+.+++.++...+ +.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-ELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-HHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-HHHH--h
Confidence 457888999999999999999988888887777776677788888777777655555667777777775433 3333 5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000050 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2622)
Q Consensus 1379 i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2622)
++|.+.....-. +++.|...-.+++.++..-|.. ...++.-++..+.+++..=|-++..-+..+..+ ....+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-CccccCc
Confidence 677777666555 7888888888888888776643 344555566677788866666665555444332 2234577
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHh
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2622)
.+|.++..|.+++--+|..+++.|+.++...|+ +..++...++-++|+...|......+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 888888888888888888899999988887665 3555666667788888888888888888775
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.14 E-value=0.00015 Score=80.37 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=161.3
Q ss_pred hHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000050 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2622)
Q Consensus 1737 ~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~----~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~ 1812 (2622)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.|+...|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 36677888889999999999999999999874 334677899999999999999999999999999984322
Q ss_pred ccccCCCCCCcccHHHHHHHHHHHhChhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHH
Q 000050 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2622)
Q Consensus 1813 ~~~~~~~dde~~~~~~~~~~l~~~Lg~e~~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~p~~l~~~l~~ll~~L~~ 1892 (2622)
++++.+..+..++.....+.+...+..|.+.++.+ . + ....+.++..+..
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k--v---~~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q--P---LEDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C--B---SCCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C--c---ccchHHHHHHHHH
Confidence 11122334444554455688889999999999988 2 1 1234567777888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHH
Q 000050 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2622)
Q Consensus 1893 ~L~s~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2622)
.+.|.+..++.++.+++.++....++. .+..++.-+...++++|+.++.-++..+.+++..--.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 889999999999999999998877654 5667777777788889999999999999887654322333333344444444
Q ss_pred HHh-cCCcHHHHHHHHHHHH
Q 000050 1972 TAL-CDSILEVRESAGLAFS 1990 (2622)
Q Consensus 1972 ~~L-~d~d~~VR~~A~~al~ 1990 (2622)
... -...|.+|..|...-.
T Consensus 238 ~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHH
Confidence 443 4567888887755433
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.11 E-value=8.8e-05 Score=90.42 Aligned_cols=177 Identities=17% Similarity=0.134 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhhHHHHHhhc
Q 000050 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2622)
Q Consensus 1394 ~~R~~al~al~~La~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2622)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|..+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4677777777777764431 11122 256889999 999999999999999999998754332 12 36789999988
Q ss_pred cC-CChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhh
Q 000050 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2622)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~ 1545 (2622)
.+ ++-.++..|+.+|+.++.+.+....... ...+|.|..+|++.++.||..|+++|..++..- ++.. ..+.+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~---~~vv~- 207 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHK---GTLCS- 207 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGH---HHHHH-
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHH---HHHHH-
Confidence 85 4678899999999999987665433222 368899999999999999999999999998652 2110 00000
Q ss_pred cCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1546 LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1546 l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..++|.|...+.+.+..++..++.+++++...
T Consensus 208 -----------------------------~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 -----------------------------MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp -----------------------------TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -----------------------------cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 12445555566666667777777777777653
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.10 E-value=0.0001 Score=92.52 Aligned_cols=257 Identities=11% Similarity=0.036 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhhc-----------CCCHHHHHHHHHHHHHHhhhcCChhHHhHH
Q 000050 1473 RTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT-----------DTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2622)
Q Consensus 1473 ~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L~-----------D~~~~VR~aA~~aL~~l~~~~~~~~i~~il 1539 (2622)
.....|+.+|+.++.. + .....+ ...++.|..++. ..++.+|..|+++|..++..- +..
T Consensus 47 ~~~~~A~~aL~nls~d-~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~--~~~---- 118 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-E-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VAN---- 118 (354)
T ss_dssp GTHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC--HHH----
T ss_pred HHHHHHHHHHHHHcCC-H-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC--HHH----
Confidence 3455678888888875 2 222221 245666776663 124789999999999997531 110
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccch--H
Q 000050 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--I 1617 (2622)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~--l 1617 (2622)
+..+. ....++|.|.+.+.+.+.+++..|+.++.+++.. .+ .+.... -
T Consensus 119 --------------k~~i~--------------~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~i~~ 168 (354)
T 3nmw_A 119 --------------KATLC--------------SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLRE 168 (354)
T ss_dssp --------------HHHHH--------------HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CC-HHHHHHHHH
T ss_pred --------------HHHHH--------------HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CC-HHHHHHHHH
Confidence 10000 0112467777777777888999999999998753 11 111111 1
Q ss_pred hhhHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhCC---CC--chhhHHHHHHHhhhcCCh---HHHHHHHHHHHHHHHH
Q 000050 1618 GLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA 1688 (2622)
Q Consensus 1618 ~~ll~~L~~~-L~d~~~~vR~~a~~aL~~L~~~~g~---~~--~~~ll~~Ll~~L~~~~~~---~~r~~a~~~L~~i~~~ 1688 (2622)
...+|.|.++ +...++.+++.|+.+|..++....+ .. ....+|.|.+.+.+..+. ..+..++.+|..+...
T Consensus 169 ~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 169 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 2467888886 4567889999999999999873221 11 356788898888765432 3566677777776642
Q ss_pred --hchh---HH--HhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCCCChHHHHHHHH
Q 000050 1689 --LGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALG 1759 (2622)
Q Consensus 1689 --~g~~---~l--~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d~~~~VR~~al~ 1759 (2622)
.+.+ .+ ...+|.+++.+.+.+..+++.+..++..++..... -...+ ...+|++...+...++.+|+.|..
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 1222 12 34689999999999999999999999999743222 22233 237999999999999999999999
Q ss_pred HHHHHHHHh
Q 000050 1760 AGHVLVEHY 1768 (2622)
Q Consensus 1760 al~~lv~~~ 1768 (2622)
++..+...-
T Consensus 328 aL~nL~~~~ 336 (354)
T 3nmw_A 328 ALRNLMANR 336 (354)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999887653
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.03 E-value=9.6e-05 Score=92.68 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=155.2
Q ss_pred CHHHHHHHHhhhHhhHhhhc---cc---hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhC---ccchhhhcHHHHH
Q 000050 1313 SEAVQRAVSSCLSPLMQSMQ---DE---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2622)
Q Consensus 1313 ~~~Vq~~a~~~L~~lv~~~~---~~---~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2622)
++++|..++.+|..+...-. .. ....++.|+..|. +.+...+..|+.+|..++.+-. ...+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46789999999887763221 11 1345777777765 4556889999999999986411 1222234677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--cHHh
Q 000050 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2622)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~l--~~~~ 1455 (2622)
.+.+....+...++.|+.++..++......-...+ ...+|.+...+.++++ .+++.|..++..+...+ .+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333688888899999998864322112222 3689999999986654 58888888888887521 2221
Q ss_pred ---H--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
+ ...+|.+++.|.+.+..++..|+.+|..++...+++...-. ...+|.|.+++.+.++.+|+.|+++|..+...
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 34689999999999999999999999999976555432222 46789999999999999999999999999976
Q ss_pred cC
Q 000050 1530 IK 1531 (2622)
Q Consensus 1530 ~~ 1531 (2622)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.99 E-value=0.0025 Score=70.86 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=158.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2622)
+.+..+...+.++ |+.++..++++++.+....+..+. ..+..++|.++..+.+++..|--.|..|++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566677778776 899999999999999998764443 45778999999999999999999999999999985 5667
Q ss_pred hHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChh
Q 000050 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2622)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2622)
++..+...+.+.+.+++--.+..+.+.+|.+ .+ ....+.++..+..++...+++|+.+|..++..++..-.+++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8899999998888888877788888888887 11 22246778888888888899999999999999987655443
Q ss_pred H-HhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhhhhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcc
Q 000050 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2622)
Q Consensus 1535 i-~~ilp~Ll~~l~d~~~~~r~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2622)
+ ..++..+ ...++..++.++..|.+.+..+.+. .-++.+
T Consensus 186 i~~~I~~eI---------------------------------------~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDEI---------------------------------------PSLLQNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTTH---------------------------------------HHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHHH---------------------------------------HHHHcCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 2222222 2234445667777777777777654 222344
Q ss_pred cchHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000050 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2622)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~vR~~a~~a 1642 (2622)
.+-+..+......+. -...|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 344444444444444 45667777776443
No 97
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.98 E-value=7.4e-05 Score=91.08 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhhhCcc-chhhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHc
Q 000050 1354 ERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAF 1429 (2622)
Q Consensus 1354 ~r~~Aa~~L~~l~~~lg~~-~l~~~~i~~~L~~-~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l 1429 (2622)
.|..|...|..++...... .+.....++.+.. ++.+. ++..|..|+.+++.++..-+. ....+. ..+|.|+.++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHHH
Confidence 4555555555555433211 1112245666667 78776 799999999999999865332 223333 5889999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh-hhhHHH
Q 000050 1430 S-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPK 1503 (2622)
Q Consensus 1430 ~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L-~~ivp~ 1503 (2622)
. +++..+|..|..++..++...++. .+ ...+|.++..|.+++..++..++.+|+.++.+.++...... ..++|.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 7 568999999999999987654432 22 35789999999999999999999999999987665433222 468899
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1504 LTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
|+.+|.++++.||+.|+.+|+.++..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999875
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.79 E-value=0.00016 Score=89.35 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHh
Q 000050 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2622)
Q Consensus 1883 l~~ll~~L~~~L~s~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~ 1962 (2622)
...++..+++.+.+++...|....-.+..+.+. .+.+. -+...+.+-++++++-+|..|+.+++.+.. + +.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~----~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---S----TM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---T----TT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---H----HH
Confidence 346677788899999999999988888776654 44454 677888888999999999999999998742 2 23
Q ss_pred HHhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhcccCCc--hhHHHHHHHHHHhhhccccccch
Q 000050 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2622)
Q Consensus 1963 l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~aL~~L~~il~~~~~~ilp~L 2040 (2622)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ..+++..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 467788899999999999999999988887643 344556677777777776553 24566666666532 23355667
Q ss_pred hhhhhcCCCc-hH-HHHHHHHHHHHhCCChhhhHhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHH
Q 000050 2041 LPKLVHLPLS-AF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2622)
Q Consensus 2041 ip~L~~~~~~-~~-~~~aL~sLa~~~g~~l~~~l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2622)
++.+....+. .+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+...+......+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 7777654331 22 222333222221111112235566777777788888887666666544322 22222333344455
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000050 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2622)
Q Consensus 2119 ~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V~~~a~~aL 2177 (2622)
..+.++++.+|..|+..+..+....+.-+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 55667889999999999998887655444433 34456677888888766555443
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.71 E-value=0.0012 Score=81.40 Aligned_cols=269 Identities=12% Similarity=0.114 Sum_probs=145.0
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 000050 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2622)
Q Consensus 1346 L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2622)
+..++|...|+-....+..+.+. ....+ -+...+.+-++++ |+-.|-.|+.+++.+. . ...+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~---~~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---D---STMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---C---TTTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---C---HHHHHHHHHHH
Confidence 44567888999888888777765 33333 4677788888887 7999988877666654 2 23466788889
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
-+++.|.++.||.+|.-+...+... .++.++.+++.+-+.+.+.+..+...|+.+|..+....+.. +..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a----~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA----VSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH----HHHHHHHHh
Confidence 9999999999999998887777654 45567888999989999999888888888888887654322 334444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCC--h-hHHhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhhhhHHHHH
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN--P-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i~~ilp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L 1581 (2622)
+. .-.++-.+- .-+..+....+. + .-..+++.+...+...+..+- +|+.++... .+ .....+...+..+
T Consensus 220 ~~-~l~~~~~q~---~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAYC---MMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHHH---HHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHHH---HHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 31 111233332 233333333322 2 236778888888887777766 677777642 11 1222233344556
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000050 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2622)
Q Consensus 1582 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL 1643 (2622)
...+.++++++|..|...+..+... .|..+.. .-..+..++.|++..++..|+..|
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6667777889999998888777663 3334333 334456677788877666555443
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.44 E-value=1.4e-05 Score=85.36 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=87.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2622)
...+.+...++++ ++.+|..|+.+++.+ +. + . ++.++..+.|+++.||..+..+++.+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 4456677778776 788898887766543 22 1 1 478888999999999999988887662 24
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2622)
..+|.++..+.+++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|.++|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888889999999999999998752 4567888889999999999999999865
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.33 E-value=0.054 Score=70.72 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=46.7
Q ss_pred hHHHHHHHHccC--CHHHHHHHHHHHHHHHhhcChhhhhhhhh-----------hhhHHHHHhhcCCCCHhhHHHHHHHH
Q 000050 2230 LLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVI-----------PITGPLIRIIGDRFPWQVKSAILSTL 2296 (2622)
Q Consensus 2230 ilp~ll~~L~~~--~~~~r~~aa~~L~~l~~~~~~~~l~p~v~-----------~i~~~Li~~l~~~~~~~vk~~al~~L 2296 (2622)
+++.+++.+... ...+|..|..++++++...+ ..+.++. .++..|+..+.+....++|.+++.++
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455566655544 67889999999999986543 2232222 23333445566667889999999999
Q ss_pred HHHHH
Q 000050 2297 SIIIR 2301 (2622)
Q Consensus 2297 ~~L~~ 2301 (2622)
..++.
T Consensus 390 ~ay~~ 394 (651)
T 3grl_A 390 QCFLY 394 (651)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87764
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.32 E-value=0.32 Score=63.65 Aligned_cols=211 Identities=17% Similarity=0.137 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcc-
Q 000050 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-RNSAKRREGALLAFECLCEKLGR- 1412 (2622)
Q Consensus 1335 ~~~~i~~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~-~~~~~~R~~al~al~~La~~~~~- 1412 (2622)
..+.++.|.+.+.++.-.+.||.|..+|..+++........ .-++.+...+++ ..|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 45678888888888777788999999999988766543322 224444444433 23444444454444333221110
Q ss_pred ---------------cchhHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhhHHHHHhhcc
Q 000050 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2622)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2622)
.+...+ .+-++.++.++...+..+|..+..++..+...-+... + ..-+|.+++.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999987655432 2 256788999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh-hhhhhhhHHHHhhhhcCCCH----HHHHHHHHHHHHHhhhcC-C-hhH--HhHH
Q 000050 1469 DKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-N-PEI--ASLV 1539 (2622)
Q Consensus 1469 ~~~w~~r~~a~~~L~~la~~~p~~l-~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~-~~i--~~il 1539 (2622)
++.-..|..++.+|.+++.+.++-. .-.+...++.++..+..... .|-.-|...|..+.+.-. | ..+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 9888899999999999998766532 22345677888887765433 677778888888876521 1 122 2345
Q ss_pred HHHHhhcC
Q 000050 1540 PTLLMGLT 1547 (2622)
Q Consensus 1540 p~Ll~~l~ 1547 (2622)
|.|...+.
T Consensus 257 ~~L~~LL~ 264 (651)
T 3grl_A 257 QRMKPWFE 264 (651)
T ss_dssp GGGGGGGC
T ss_pred HHHHHHhC
Confidence 55555543
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.31 E-value=0.51 Score=64.89 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred hhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhH-HHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhH-
Q 000050 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI- 1535 (2622)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2622)
.++| +++.|.+++...|.+||.+|..++......-.-.-..++ +.+..++.|++..||.+|..+|++++..-+....
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788888999999999999998642221111123344 5567789999999999999999999865332111
Q ss_pred ----HhHHHHHHhhc
Q 000050 1536 ----ASLVPTLLMGL 1546 (2622)
Q Consensus 1536 ----~~ilp~Ll~~l 1546 (2622)
..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 34566665554
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.24 E-value=5.9e-05 Score=80.41 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhh
Q 000050 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2622)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~ 1498 (2622)
..-.+.+...+.|+++.||..|..++..+. .. . +|.+++.+.+++|.+|..++.+|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----DE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----ST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 345677788889999999988877765441 11 1 4888888888999999999998887642 3
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHH
Q 000050 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2622)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r 1554 (2622)
..++.|...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 457778888889999999999999998863 2456667777767666666
No 105
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.14 E-value=5.5e-05 Score=88.70 Aligned_cols=184 Identities=19% Similarity=0.188 Sum_probs=101.3
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 000050 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2622)
Q Consensus 1346 L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~l 1425 (2622)
+..++++.+|..++..+ ++. .+..+++|+ ++.+|..+... ++. +.+
T Consensus 58 ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~~L 103 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------EQL 103 (244)
T ss_dssp GTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------GGG
T ss_pred HhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------HHH
Confidence 33455667777766642 111 133445555 67777766542 221 234
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHh
Q 000050 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2622)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~ 1505 (2622)
...++|++..||.++...+ +.. .+...+.+++|.+|..+..-+ + + +.+.
T Consensus 104 ~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~l~ 152 (244)
T 1lrv_A 104 SALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------P-------P---GRLF 152 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------C-------G---GGGG
T ss_pred HHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------C-------H---HHHH
Confidence 4556777777777665532 211 122335667777777665521 1 1 1234
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
.+++|+++.||..+...+ +. +.+...+.|++..+|.+ +..+ . .+.+...
T Consensus 153 ~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~~L 202 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL---------R-------GDDLLEL 202 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGGGG
T ss_pred HHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHHHH
Confidence 567788888887777641 11 23335567777777732 2221 0 1234556
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~ 1644 (2622)
+.|.+|.||..+...++ .+.+..+ .|++|.||..+...||
T Consensus 203 l~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 203 LHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 67788888887766532 1334444 7888888888776654
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.05 E-value=0.33 Score=60.42 Aligned_cols=297 Identities=12% Similarity=0.099 Sum_probs=187.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000050 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2240 ~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~ll 2319 (2622)
.|+...+.-|+..|....+..+ .....-+..++....|. +.++|..|+..|..++.. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4578889999999999987765 22233445567777765 888999999999888753 56899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHH
Q 000050 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKD 2398 (2622)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~ 2398 (2622)
+.|+..+..-+...-.+|-.+...+| ...+..+...+..++..+|+.++..|++-+...+... ..+.-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888899999988877654 3456667777766789999999999999888776554 45555667888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCch---HHHHHHHHHHhh---cCCCCchhhHhHHHHHHHHHhhCCccccCChhHHH
Q 000050 2399 LVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~---~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.+.|-...--.....+|+.+-..-... ++.+++.+.... ....+...-...+.++..++......+-...+..=
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 888876655566667776654333322 233444433221 11122222233455666555444433333333333
Q ss_pred HHHHHHhhhccCC-----hhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCC-----------------H
Q 000050 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS-----------------S 2530 (2622)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s-----------------~ 2530 (2622)
+...+...+..=. ...+-.-+.++..+..+++... .....+..+...|..-+.-.. .
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333333211 1256667777777777765321 011223333344443322111 1
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000050 2531 EVRRRALSALKSVAKANPSAI 2551 (2622)
Q Consensus 2531 dvr~~a~~~l~~~a~~~~~~v 2551 (2622)
.--...++++.+++++.|+.+
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 223678899999999999765
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.03 E-value=0.0002 Score=83.87 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=122.6
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCCChhHHHH-HHHHHhccccccCChhhhhhHHHHHHhh
Q 000050 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2622)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~~~~~r~a-l~~L~~~~~~~~~~~~~l~~i~p~L~~~ 1584 (2622)
.+++|+++.||..+...+. ...+...+.|++..+|.+ ...+ .. +.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L---------~~-------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRL---------PR-------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTS---------CS-------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHC---------CH-------HHHHHH
Confidence 4679999999999998541 123556678999999843 3221 11 245667
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000050 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2622)
Q Consensus 1585 l~d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~ 1664 (2622)
++|.++.||..+...+ .. . .+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--~----------~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--E----------QLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--G----------GGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH--H----------HHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887632 11 1 234557899999999998732 221 223
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHh
Q 000050 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2622)
Q Consensus 1665 ~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~ 1744 (2622)
.+.++.+..+|..++.. ++.+ .+...+.++++.||..+...+ +. +.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~~----------~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------RG----------DDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------CG----------GGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHH
Confidence 44556667788877654 2222 233456889999998887642 11 35666
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000050 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2622)
Q Consensus 1745 ~L~d~~~~VR~~al~al~~lv~~~~~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~ 1800 (2622)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999998877643 2344444 8999999998775543
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.64 E-value=0.012 Score=68.32 Aligned_cols=192 Identities=15% Similarity=0.092 Sum_probs=116.4
Q ss_pred HhhHHHHHhhccCCCh--hhHHHHHHHHHHHHhhCchhhh-hhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhhc-CC
Q 000050 1457 KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KN 1532 (2622)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~la~~~p~~l~-~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~~ 1532 (2622)
...+|.+++.|.+++. ..+..++..+..+++..+..-. -.-...+|.|+++|...+++||..|+++|..++..- .+
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3457888888888777 7777888888888876543211 112356799999999999999999999999998632 12
Q ss_pred h-hH--HhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhhhhHHHHHHhhh-------c---------CCCHH
Q 000050 1533 P-EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAE 1591 (2622)
Q Consensus 1533 ~-~i--~~ilp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~~~~~~l~~i~p~L~~~l-------~---------d~~~~ 1591 (2622)
. .+ ...+|.|.+.+. .++..++ .+..+|......+..........+|.|...+ . ..+.+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 2 12 357889999886 4566666 3444443322222111222223345554422 1 12668
Q ss_pred HHHHHHHHHHHhhhhcCC-CCcccchHhhhHHHHHHHhc------CCCHHHHHHHHHHHHHHHhh
Q 000050 1592 TKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRG 1649 (2622)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~vR~~a~~aL~~L~~~ 1649 (2622)
++..|..++.+++..-.+ .+.+... +.+++.|..++. +.+...++.+..+|..|...
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999763101 1112211 224444444433 23456777787777776543
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.61 E-value=0.057 Score=61.22 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=123.6
Q ss_pred cChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000050 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2622)
Q Consensus 2345 ~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2622)
+.+..|+..+++.+..-+.+.+. ..++-.++....+ .+.++.+...+.+++.+.+|..|+..||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 34667777777766443322222 1222233333211 456777777888888899999999999988 3 33
Q ss_pred hHHHHHHHHHHhh-cCCCCchhhHhHHHHHHHHHh-hCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2425 GQLADLLQELLNL-ASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2425 ~~~~~~l~~ll~~-~~~~~~~~r~~~~~~L~~~l~-~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
..+-+++. .+ ..++.|.++.-...++...+. ..|+. .++.+...+.|+++.+|..|+........
T Consensus 102 ~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~- 168 (240)
T 3l9t_A 102 KEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTN- 168 (240)
T ss_dssp HHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGG-
T ss_pred HHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhc-
Confidence 33334443 42 357789888877888888875 56653 23456677889999999999987643111
Q ss_pred hhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhh
Q 000050 2503 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2622)
Q Consensus 2503 ~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2622)
. |........+++.+-....|++.-||+...+.|+.+++.+|+.|+.++..
T Consensus 169 ---~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 169 ---R-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp ---S-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---c-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 1 22223456677777777889999999999999999999999999887763
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.14 E-value=0.22 Score=57.79 Aligned_cols=185 Identities=15% Similarity=0.136 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCCh--hHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHH
Q 000050 2155 ISTLIVLLSDSDS--TTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 2232 (2622)
Q Consensus 2155 l~~L~~~l~d~d~--~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp 2232 (2622)
++.++.++..+++ +++..|..++..++...+. .++.+.. ...+|
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~---------~r~~I~~-------------------------~G~Ip 55 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSE---------ARKRVNQ-------------------------LRGIL 55 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHH-------------------------TTHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH---------HHHHHHH-------------------------cCCHH
Confidence 5677888887766 8888887888877643211 1111110 01468
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhh--hhhhHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCc
Q 000050 2233 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2622)
Q Consensus 2233 ~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v--~~i~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2622)
.|++.|.++++++++.|+.+|..++.... .-+..+ ...+++|++.|....+.+++..+..+|..|...- ..++.
T Consensus 56 ~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~--~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--~~k~~ 131 (233)
T 3tt9_A 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDN--DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KLKNL 131 (233)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--GGHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--hhHHH
Confidence 89999999999999999999999986443 222222 3457889999974347889998888888775421 12211
Q ss_pred h-HHHHHHHHHHh-------C---------CCCHHHHHHHHHHHHHHHhccc-------ChhhHHHHHHHhhhc------
Q 000050 2311 L-PQLQTTFIKCL-------Q---------DSTRTVRSSAALALGKLSALST-------RVDPLVGDLLSSLQV------ 2360 (2622)
Q Consensus 2311 l-~~L~~~llk~L-------~---------d~~~~vR~~Aa~aLg~L~~~~~-------~~~~ll~~Ll~~l~~------ 2360 (2622)
+ ..-++.++..+ . ..+..++..|+.||..|+..++ .-+.+++.|+..++.
T Consensus 132 i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~ 211 (233)
T 3tt9_A 132 MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211 (233)
T ss_dssp HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhccc
Confidence 1 11122222211 1 1267999999999999954321 123455666655543
Q ss_pred CCHhHHHHHHHHHHHHH
Q 000050 2361 SDAGIREAILTALKGVL 2377 (2622)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi 2377 (2622)
.+...++.++.+|+.+.
T Consensus 212 ~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 212 PDDKATENCVCILHNLS 228 (233)
T ss_dssp TTCHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHH
Confidence 13456677777776654
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.85 E-value=0.086 Score=59.80 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=108.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHhchhHHHh
Q 000050 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2622)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~g~~~l~~ 1696 (2622)
.+.+++....+..++..+||..|+..||.+ . ...+.++.+...+..++...+|..++..+++++...+.+ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 455788888888899999999999988876 2 246788877766777888889988888999988766655 3
Q ss_pred HhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 000050 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2622)
Q Consensus 1697 llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~~ 1769 (2622)
.++.+..-+.+++..+|..+.....-.+.. ..|......++|.+-....|++.+||.+...+++.+.+..+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 556677788899999999888765433322 23444556688888889999999999999888887665443
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.57 E-value=2.2 Score=53.25 Aligned_cols=262 Identities=16% Similarity=0.126 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCC
Q 000050 2087 DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2622)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d 2166 (2622)
+...+..+...+......+. +..+..+..+++.+.|++..+|..|+..|..+|+. .+++.+...|.+++...+
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccc
Confidence 34555555555555554432 22345556666677788888888888888887764 456777777777777666
Q ss_pred hhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHH
Q 000050 2167 STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELR 2246 (2622)
Q Consensus 2167 ~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r 2246 (2622)
..-+...-.+|-.+.+..++..+ ..+...+.++++.+|
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl------------------------------------------~~lf~~i~~~~e~~R 151 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTL------------------------------------------GGLFSQILQGEDIVR 151 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHH------------------------------------------HHHHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHH------------------------------------------HHHHHHHcccchHHH
Confidence 66666666666666554433322 222333334556677
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhhh-hHHHHHhhcCCCCHhhHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH--h-
Q 000050 2247 EQAALGLGELIEVTSEQSLKEFVIPI-TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC--L- 2322 (2622)
Q Consensus 2247 ~~aa~~L~~l~~~~~~~~l~p~v~~i-~~~Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l~~L~~~llk~--L- 2322 (2622)
+.+...|..-+...+.+.+.+-+... +.-+..++.+- +.+--...+..|+.+ ++.... +...+|...+..- |
T Consensus 152 er~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~l--kl~~t~-~g~qeLv~ii~eQa~L~ 227 (507)
T 3u0r_A 152 ERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV-TGEEFVLFMKILSGL--KSLQTV-SGRQQLVELVAEQADLE 227 (507)
T ss_dssp HHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTS--GGGSSH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhc--ccccCc-hHHHHHHHHHHHHHhcc
Confidence 76666666655555544443333222 22233444432 222212222222111 111111 1123344444332 1
Q ss_pred ---CCCCHHHHHHHHHHHHHHHhc---ccChhhHHHHHHHh----hhcC-C----HhHHHHHHHHHHHHHhhcC-CCCCh
Q 000050 2323 ---QDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLSS----LQVS-D----AGIREAILTALKGVLKHAG-KSVSS 2386 (2622)
Q Consensus 2323 ---~d~~~~vR~~Aa~aLg~L~~~---~~~~~~ll~~Ll~~----l~~~-d----~~vr~~~l~AL~~vi~~~g-~~~~~ 2386 (2622)
.-.+.+.-.+...|+-.-.-+ +.+-.+++.-++.. +..- + .+.|...|++++++...+| .....
T Consensus 228 ~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~ 307 (507)
T 3u0r_A 228 QTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLE 307 (507)
T ss_dssp SCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHH
Confidence 112444444455555443221 22233444444433 3321 1 2378899999999999988 44435
Q ss_pred HHHHHHHHHHHHhhc
Q 000050 2387 AVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2387 ~~~~~i~~~L~~~l~ 2401 (2622)
.....|+..|...+=
T Consensus 308 ~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 308 TNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCC
Confidence 677888888876654
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.48 E-value=3.5 Score=51.05 Aligned_cols=237 Identities=11% Similarity=0.086 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCc
Q 000050 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2622)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2622)
+.|-..|.-+.|++-+-... ..+.+++.+.+...+++..+|+-+++.|+..+....+ .+...++.+...+.+++.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~~L~~LL~d~d~ 114 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIANLNMLLRDENV 114 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCH
Confidence 34555666666654432222 2344444444555566666777777777766654332 333333333222233333
Q ss_pred hhhHhHHHHHHHHHh-------hCCcc-ccCChhHHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhc--CC--
Q 000050 2444 AARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP-- 2508 (2622)
Q Consensus 2444 ~~r~~~~~~L~~~l~-------~~~~~-i~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~-- 2508 (2622)
.....++.+...+.. .++.. ......|+. +-..+...+.+++..+|-.++.-+-.++..+... ++
T Consensus 115 ~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~ 194 (386)
T 3o2t_A 115 NVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEI 194 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccc
Confidence 333334443333321 11110 000123433 3456667788888999999999888877655321 11
Q ss_pred --------------CCc---------hhhHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHhhHHHHHH
Q 000050 2509 --------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 2563 (2622)
Q Consensus 2509 --------------~~~---------~~l~~~l~~l~~~l~d--~s~dvr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~ 2563 (2622)
.++ .....++..++..+.+ -++-.-.+++..|..+++..|.. ...++|.+.
T Consensus 195 p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~----~~rIl~aL~ 270 (386)
T 3o2t_A 195 PRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMF----MSEVIQAYE 270 (386)
T ss_dssp CGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGG----HHHHHHHHH
T ss_pred ccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHH----HHHHHHHHH
Confidence 111 1123355666666553 23445567888899999998775 344555554
Q ss_pred hhh--------cCCcchhhchhHHHHHHHhcccccchhHHHHHHHhhchhhhhh
Q 000050 2564 ECL--------KDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 2609 (2622)
Q Consensus 2564 ~~~--------~~~~~~vk~aae~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 2609 (2622)
.-. +-..-.|+...-..++++++-+...+..+.+..+|..|-+++.
T Consensus 271 ~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~ 324 (386)
T 3o2t_A 271 TLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQA 324 (386)
T ss_dssp HHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHH
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHH
Confidence 321 1112235666778899999988888888899999877765543
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.55 E-value=15 Score=45.43 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChhH
Q 000050 2090 VQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169 (2622)
Q Consensus 2090 vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~V 2169 (2622)
.+-..+.-...++..-+..-++.+++.+++...+.+..+|...+..+...|.. -..+++.++..|..+++|.|..|
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHH
Confidence 34444445555544435566888999999998898999999999999888864 23456888889999999999999
Q ss_pred HHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHHHHHH
Q 000050 2170 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQA 2249 (2622)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~r~~a 2249 (2622)
.+.+..+.+.+.+. .+..+. ............+ ..+..+-..++..+.+++..+|..+
T Consensus 117 ~K~~I~~~tslYpl--------~f~~i~---~~~~~~~~~e~~W-----------~~m~~lK~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 117 VKKAILTMTQLYKV--------ALQWMV---KSRVISELQEACW-----------DMVSAMAGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHH---HC-CCCHHHHHHH-----------HHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHh---cCCCcchhHHHHH-----------HHHHHHHHHHHHHhccCCcchHHHH
Confidence 99988888876532 111111 1100000000000 0122233344555677788899999
Q ss_pred HHHHHHHHhh
Q 000050 2250 ALGLGELIEV 2259 (2622)
Q Consensus 2250 a~~L~~l~~~ 2259 (2622)
.+.+..++..
T Consensus 175 iKFle~VIl~ 184 (386)
T 3o2t_A 175 IKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988888843
No 115
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.12 E-value=18 Score=42.28 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCChh
Q 000050 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2622)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l~d~d~~ 2168 (2622)
+.+-..+.-...++..-++..++.+++.++....+.+..+|...+..+...|..- ..+.+.+++.|..+++|.|+.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 4555555555555444455678999999999888888999999999998888542 356788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchh-h--hhhhhcCCccccccCCCCcCchhhHHHHHHHHccCCHHH
Q 000050 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD-K--ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245 (2622)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~-~--~~~~~~~~~~~l~g~~~~~~l~~ilp~ll~~L~~~~~~~ 2245 (2622)
|.+.+..+.+.+.+.. + +.+..... . ....| ..+..+-..++..+.+++..+
T Consensus 106 V~K~~I~~~~~iY~~~--------l----~~i~~~~~~~~~~~~~W-------------~~m~~lK~~Il~~~~s~n~gv 160 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNG--------L----QYLCSLMEPGDSAEQAW-------------NILSLIKAQILDMIDNENDGI 160 (257)
T ss_dssp HHHHHHHHHHHHHHHH--------H----HHHTTSSSCCHHHHHHH-------------HHHHHHHHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHHHHHH--------H----HHHhcCCCCcchHHHHH-------------HHHHHHHHHHHHHHccCCcch
Confidence 9999988888775432 1 11110000 0 00000 011223333445566778889
Q ss_pred HHHHHHHHHHHHh
Q 000050 2246 REQAALGLGELIE 2258 (2622)
Q Consensus 2246 r~~aa~~L~~l~~ 2258 (2622)
|..+.+.+..++.
T Consensus 161 kl~~iKF~e~vIl 173 (257)
T 3gs3_A 161 RTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888874
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.07 E-value=3.4 Score=59.45 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHH
Q 000050 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2622)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L 1504 (2622)
.++.+|+.+.-+++.++... +...++.+...+.+.+...+...+..++.+||++.. |..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 35678888877777766532 222345555556666666676777888899998864 3344555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHhhhcCChhHHhHHHHHHhhcCCC--ChhHH-HHHHHHHhccccccCChhhh
Q 000050 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2622)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~ilp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~~~~~~l 1574 (2622)
.+++. +...+||.+|++||..++... | ..+-+.++....|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 224689999999999998532 2 22334455555333 34566 455555431 1233
Q ss_pred hhHHHHHHhhhcCCCHHHHHHHHHHHHHhhhh
Q 000050 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2622)
Q Consensus 1575 ~~i~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 1606 (2622)
..+.......-.+.+..|+......|.++++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 22333333333556778887777777777653
No 117
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.60 E-value=2.4 Score=47.10 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=88.2
Q ss_pred cCchhhHHHHHHHHccC------CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCC--CCHhhHHHHHHHH
Q 000050 2225 KALQPLLPIFLQGLISG------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR--FPWQVKSAILSTL 2296 (2622)
Q Consensus 2225 ~~l~~ilp~ll~~L~~~------~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~--~~~~vk~~al~~L 2296 (2622)
.++++++|-|.+-+.++ +...-......+..+...-. =.+.||+-+++++++..+-.+ .+..+|..|...|
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 46778888887655432 44555566777777776654 468999999999988875332 1237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHH
Q 000050 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLS 2341 (2622)
Q Consensus 2297 ~~L~~~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~ 2341 (2622)
+.++++.+......-|.+..++.+.+.|+ +....--|..+|..+.
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 99999999877777789999999999997 6777777777777663
No 118
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=86.92 E-value=28 Score=38.56 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHHH
Q 000050 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLD 1664 (2622)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~vR~~a~~aL~~L~~~~g~~~---~~~ll~~Ll~ 1664 (2622)
..-......+..+... ..-.+.||+..++|.+...+-.. ...+|+.|+..++.+++..|..+ .+.+...+.+
T Consensus 61 ~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 61 EVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 3333444455555542 22457899999999999987532 22799999999999999998753 2344444444
Q ss_pred Hhhhc-CChHHHHHHHHHHHHHHHHhchhHHHhHh-HHH
Q 000050 1665 ALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2622)
Q Consensus 1665 ~L~~~-~~~~~r~~a~~~L~~i~~~~g~~~l~~ll-p~l 1701 (2622)
.+.+. .+....-|+..++.. +|.+..+.++ |.+
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 44433 344566677777665 4666554433 554
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=85.35 E-value=62 Score=37.70 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=106.4
Q ss_pred HHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 000050 2354 LLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQE 2433 (2622)
Q Consensus 2354 Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ 2433 (2622)
|++..+....+.+-..|.-.++++-... +.+.+++++.+.....+++..+|+-.++.++..+...++ .+...++.
T Consensus 20 lln~A~~~~~~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l~~ 94 (257)
T 3gs3_A 20 WCNELVIASPSTKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVINV 94 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHH
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3443333222466666677777554422 234556666666666667777888888888777765542 44445554
Q ss_pred HHhhcCCCCchhhHhHHHHHHHHHh-------hCCcc-ccCChhHHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000050 2434 LLNLASSPSWAARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2434 ll~~~~~~~~~~r~~~~~~L~~~l~-------~~~~~-i~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
+...+.+++......++.+...+.. .+|.. -.....|+. +-..+...+.+.+..+|-.++.-+-.++..
T Consensus 95 L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 95 VSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 4333444444444445554444432 12110 000123444 345677778888999999999988887765
Q ss_pred hhhc---------------CCCCch---------hhHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchh
Q 000050 2503 QIQS---------------GPANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSA 2550 (2622)
Q Consensus 2503 ~~~~---------------~~~~~~---------~l~~~l~~l~~~l~d~--s~dvr~~a~~~l~~~a~~~~~~ 2550 (2622)
+... -|.+++ ....++..++..+.+. +.-.-.+++..|..+++..|..
T Consensus 175 qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 175 QSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp TSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred hcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 4321 111111 1123444444443332 4445668888899999988774
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=85.25 E-value=34 Score=46.97 Aligned_cols=265 Identities=11% Similarity=0.084 Sum_probs=145.6
Q ss_pred chhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcC---hhhhhhhhhhhhHHHHHhhcC--CCCHhhHHHHHHHHHHHHH
Q 000050 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTS---EQSLKEFVIPITGPLIRIIGD--RFPWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2227 l~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~---~~~l~p~v~~i~~~Li~~l~~--~~~~~vk~~al~~L~~L~~ 2301 (2622)
+..++|....|+-+.+..+...+..++..++.-.+ .-.+.+.+..+ ...|.. -.+..-..+++.+|..+++
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~----y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDL----YDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHH----HHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHH----HHHhccccccchhHHHHHHHHHHHHHH
Confidence 45578888899999999988999999999997554 22222222333 333433 2345556678888887776
Q ss_pred hc--CCCccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC---------------------------------
Q 000050 2302 KG--GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR--------------------------------- 2346 (2622)
Q Consensus 2302 ~~--~~~l~p~l~~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~--------------------------------- 2346 (2622)
-+ +..+++++..+...++..+.-++..--..+...+..++..-|-
T Consensus 413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESS 492 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCS
T ss_pred HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccc
Confidence 43 2346778888888888888767777777777777776442111
Q ss_pred ------------------------hhhHHHHHHHhhhc-CCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 000050 2347 ------------------------VDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2622)
Q Consensus 2347 ------------------------~~~ll~~Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2622)
+..++..++..++. .+..+-...-.++.-++.++ +++..+.++.-+.+...
T Consensus 493 ~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~l----S~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 493 KTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESM----DDKIFNYFASLLNRNFW 568 (799)
T ss_dssp SSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTB----CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHH
Confidence 01122223333321 12222233333333333333 33333444443333333
Q ss_pred CC-CHHHHHHHHHH----HHHHHhhcCchHHHHHHHHHHhh-------c-----CC----CCchhhHhHHHHHHHHHhhC
Q 000050 2402 HD-DDHVRVSAASI----LGIMSQCMEDGQLADLLQELLNL-------A-----SS----PSWAARHGSVLVFATFLRHN 2460 (2622)
Q Consensus 2402 ~~-~~~vr~~aa~~----Lg~L~~~~~~~~~~~~l~~ll~~-------~-----~~----~~~~~r~~~~~~L~~~l~~~ 2460 (2622)
+. .......++.. ++.+++..|+ .+..+++.+... . .. +......-....|+.++..+
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 22 11122344444 6788888887 766666654311 1 01 01112223455777778888
Q ss_pred CccccCChhHHHHHHHHHhhh-ccCChhHHHhHHHHHHHHHhh
Q 000050 2461 PSAISMSPLFLSILDRLKSSL-KDEKFPLREASTKALGRLLLH 2502 (2622)
Q Consensus 2461 ~~~i~~~~~~~~i~~~l~~~~-~~~~~~ir~~a~~alg~ll~~ 2502 (2622)
+..++ ++.+++.+.+.... +..+..+-..+..-+..++..
T Consensus 648 g~~lL--~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 648 HESLL--EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp GGGGG--TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred cHHHH--ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 77775 46777777666555 334555444444445554444
No 121
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=84.72 E-value=43 Score=46.00 Aligned_cols=277 Identities=13% Similarity=0.130 Sum_probs=139.6
Q ss_pred HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcC---CCHHHHHHHHHHHHHHhhhcCC
Q 000050 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
++.++|.++.++-+++-.+...+..++..+++..|......+|.++..+...|.. ..+.=-.+|.++|..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667788888888888888888889999999988833333456666666666655 3444445667777777755432
Q ss_pred -hhHH-hHHHHHHhhcC--CCChhHH--HHHHHHHhccccccC-----Ch--hhh---hhHHHHHHhhh---c-------
Q 000050 1533 -PEIA-SLVPTLLMGLT--DPNDHTK--YSLDILLQTTFVNTV-----DA--PSL---ALLVPIVHRGL---R------- 1586 (2622)
Q Consensus 1533 -~~i~-~ilp~Ll~~l~--d~~~~~r--~al~~L~~~~~~~~~-----~~--~~l---~~i~p~L~~~l---~------- 1586 (2622)
+.+. .+.|.|...+. |+++-.+ .+++.+.. +...+ .. ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKT 494 (799)
T ss_dssp STTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSS
T ss_pred CcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcccccccc
Confidence 2222 23333322221 4544322 23332221 11111 00 000 00011111110 0
Q ss_pred ---CCCHHHHHHHHHHHHHhhhhcCCCCcccchHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHHH
Q 000050 1587 ---ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2622)
Q Consensus 1587 ---d~~~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~vR~~a~~aL~~L~~~~g~~~~~~ll~~L 1662 (2622)
|.+.+.+ .++.. + ..+..++..++..+..++.. .+..+-.....++..+...+.++.++.++..+
T Consensus 495 ~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~ 563 (799)
T 1vsy_4 495 FRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLL 563 (799)
T ss_dssp CCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHH
T ss_pred ccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0111100 11111 1 13445566666777777663 33444455566677777777777677777766
Q ss_pred HHHhhhcCChHHHHHHHHH----HHHHHHHhchhHHHhHhHHHHHhcc----CC------Chhh--HH----HHHHHHHH
Q 000050 1663 LDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFKY 1722 (2622)
Q Consensus 1663 l~~L~~~~~~~~r~~a~~~----L~~i~~~~g~~~l~~llp~l~~~l~----~~------~~~v--R~----~al~~l~~ 1722 (2622)
.+...+............- +..++..-+. .+..++|.+...+. +. ..++ ++ -.+.++..
T Consensus 564 ~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~ 642 (799)
T 1vsy_4 564 NRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALND 642 (799)
T ss_dssp HHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHH
Confidence 6655443211100011111 2333344344 56666666553321 11 1111 22 34567777
Q ss_pred hhhhhCcchhhhHHhHHHHHHhhc
Q 000050 1723 LPRSLGVQFQNYLQQVLPAILDGL 1746 (2622)
Q Consensus 1723 L~~~~g~~f~p~l~~ii~~ll~~L 1746 (2622)
+....|..+.+|-.+++..+...+
T Consensus 643 ~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 643 VLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHccHHHHHHHHHHHH
Confidence 777788888899888777666555
No 122
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=82.87 E-value=9.6 Score=44.13 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=92.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhH-HHHHHHHHhhCCccccCChhHHH
Q 000050 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2622)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~-~~~L~~~l~~~~~~i~~~~~~~~ 2472 (2622)
.++..+..+...+.|-.|...+....+...++.+ +.+..++. .-++|...-.. ...++.+++..|+..
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHI-PFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-HHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 3455566666667888887777765544444333 34455544 24566543322 234456666666533
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000050 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2622)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~ 2552 (2622)
.+.+.+...|+++.+|..|+.++ +..... ......+..+...+.|++.=|+.+...+|+.+++++|+.+.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQK------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGG------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhC------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999998764 222211 12334555556678899999999999999999999999999
Q ss_pred hhHhh
Q 000050 2553 VHVAL 2557 (2622)
Q Consensus 2553 ~~l~~ 2557 (2622)
+|+..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98863
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.77 E-value=53 Score=47.10 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcC----CChhHHHHHHHHHHHHHhhcCccchhhHHHHHHHHHhhchhhhhhhhcCCccccccCCCCcCc
Q 000050 2152 PNMISTLIVLLSD----SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2622)
Q Consensus 2152 ~~il~~L~~~l~d----~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 2227 (2622)
++++..+..++.+ .++.++..++-+++.++...... ...|.++.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~-------------------------------~~~c~~~~v 438 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN-------------------------------TVSCPDELL 438 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT-------------------------------CSSCCGGGT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc-------------------------------CCCCCHHHH
Confidence 5667777777654 45678889999999887642110 011223445
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhc------CCCCHhhHHHHHHHHHHHHH
Q 000050 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DRFPWQVKSAILSTLSIIIR 2301 (2622)
Q Consensus 2228 ~~ilp~ll~~L~~~~~~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~------~~~~~~vk~~al~~L~~L~~ 2301 (2622)
.++...+.+++..++.+.+..++.+||.+..- ..+ ..|.+.+. ...+..+|.+|+.+|..+..
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~l--------~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NSI--------KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GGH--------HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hHH--------HHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 66777777788888888888899999988742 122 22233332 12245688889998876643
Q ss_pred hcCCCccCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhc-CCHhHHHHHHHHHHHHHh
Q 000050 2302 KGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLK 2378 (2622)
Q Consensus 2302 ~~~~~l~p~l~~L~~~llk~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~-~d~~vr~~~l~AL~~vi~ 2378 (2622)
. +-..+.+.+++.+.|. +.++|.+|...|= ...|. ...+..+...+.. ++..|+..+...|..+..
T Consensus 508 ~-------~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 508 R-------DPRKVQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp T-------CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred h-------chHHHHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 2 1135778888888664 8999999987763 32333 2356666666643 556676666666655554
No 124
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=78.21 E-value=11 Score=43.25 Aligned_cols=141 Identities=9% Similarity=0.047 Sum_probs=92.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHhhcCCCCchhhHhHHHHHHHHHhhCCccccCChhHHHH
Q 000050 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473 (2622)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~~~~i~~~~~~~~i 2473 (2622)
.++..+..++.-+.|..+..+++.......++ ..+++..++. .-+.|...-..+-++..++...|.. +
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~-~l~~~~~~l~--~~~nWd~~D~~a~~~~~~~~~~~~~---------~ 125 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE-EVVAFKAYVP--QKAWWDSVDAWRKFFGSWVALHLTE---------L 125 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-HHHHGGGGTT--TTCSHHHHHHHHHHHHHHHHHSGGG---------H
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH-HHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHChHH---------H
Confidence 55666666666677888888888776554432 2233333332 2455654433223345555554433 3
Q ss_pred HHHHHhhhccCChhHHHhHHHHHHHHHhhhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000050 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2622)
Q Consensus 2474 ~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~~a~~~~~~v~~ 2553 (2622)
.+.+.+...|++..+|..|+.++ +.. ... .+....+..+...++|++.=||++...+|+.+++.+|+.+.+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~---l~~-~~~-----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQ---LML-KEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTT---TTC-GGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH---HHH-HHC-----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 45567788899999999998854 222 111 234555666666889999999999999999999999999998
Q ss_pred hH
Q 000050 2554 HV 2555 (2622)
Q Consensus 2554 ~l 2555 (2622)
++
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=77.19 E-value=79 Score=39.19 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH--HHHHhcCCCccCchHHHHHHHHHHhCC-
Q 000050 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTFIKCLQD- 2324 (2622)
Q Consensus 2248 ~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~l~~L~~~llk~L~d- 2324 (2622)
.-..-+..+.+..++..+.+....+..-+.+.+... +.+|-..|+..+. .+..-+.......+|-+.+.+.+....
T Consensus 270 lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~H 348 (403)
T 3fga_B 270 MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTH 348 (403)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 334567888888888888888877777777777764 6777777776653 222221122223345555555554443
Q ss_pred CCHHHHHHHHHHHHHHHhcccC
Q 000050 2325 STRTVRSSAALALGKLSALSTR 2346 (2622)
Q Consensus 2325 ~~~~vR~~Aa~aLg~L~~~~~~ 2346 (2622)
-|..||..|..++..+..+++.
T Consensus 349 Wn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 349 WNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCC
T ss_pred cCHHHHHHHHHHHHHHHHhCHH
Confidence 3999999999999999887653
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=75.19 E-value=1.5e+02 Score=35.66 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=105.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhhhcCChHHHHHHHHHHHHHHHHh
Q 000050 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2622)
Q Consensus 1619 ~ll~~L~~~L~d~~~~vR~~a~~aL~~L~~~~g~~~---------~~~ll~~Ll~~L~~~~~~~~r~~a~~~L~~i~~~~ 1689 (2622)
.++..+...+..=+.+.|..+...++.+.+.-.... -++++..|+.+..+.+ .+...|.+++.+
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d-------iAl~~G~mLRec 150 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE-------IALNCGIMLREC 150 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT-------THHHHHHHHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch-------hHhHHHHHHHHH
Confidence 467777777877789999999999999887432221 2344444444433222 122223333322
Q ss_pred ch-hHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 000050 1690 GT-VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1690 g~-~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~L~d~~~~VR~~al~al~~lv~~~ 1768 (2622)
-. +.+.. .++. .+.|.. +++++..++-+|-..|..+.+.+...+
T Consensus 151 ir~e~la~---~iL~------------------------~~~f~~--------fF~yv~~~~FdiasDAf~TfkelLt~H 195 (341)
T 1upk_A 151 IRHEPLAK---IILW------------------------SEQFYD--------FFRYVEMSTFDIASDAFATFKDLLTRH 195 (341)
T ss_dssp HTSHHHHH---HHHH------------------------SGGGGH--------HHHHTTCSSHHHHHHHHHHHHHHHHSS
T ss_pred HHhHHHHH---HHhc------------------------cHHHHH--------HHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 11 10000 0000 011111 112333344444444444444443322
Q ss_pred h-------hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccHHHHHHHHHHHhChhh
Q 000050 1769 A-------TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2622)
Q Consensus 1769 ~-------~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~~~~~~~~~~~~~~dde~~~~~~~~~~l~~~Lg~e~ 1841 (2622)
. ....+.+...+.+.+.++++-+|+.++.++|+++..-+ ........++.
T Consensus 196 k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~---------------------N~~vM~~Yis~-- 252 (341)
T 1upk_A 196 KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH---------------------NFTIMTKYISK-- 252 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG---------------------GHHHHHHHTTC--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch---------------------HHHHHHHHhCC--
Confidence 1 11223455666677889999999999999999984311 01122333332
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhC
Q 000050 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2622)
Q Consensus 1842 ~~~il~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2622)
.+.+..+...+.|.+..++-.|.++++-++.+.
T Consensus 253 -~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 253 -PENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 234555556689999999999999999998753
No 127
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=69.57 E-value=2.4e+02 Score=35.70 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHhccc--hhh--hHHHHHhhhcCCCChhhHHhHHHHHHHHHH
Q 000050 1898 SSERRQVAGRALGELVRKLGER--VLP--SIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2622)
Q Consensus 1898 ~~~~R~~A~~~L~~lv~~~~~~--~l~--~llp~L~~~L~d~~~~vR~~a~~~L~~li~ 1952 (2622)
++.+-..|+.=+|++++..+.. +.. ..-..+++.+.++|++||..|+.++..++.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666777888899999887654 222 234556778889999999999999988764
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=69.17 E-value=96 Score=39.13 Aligned_cols=228 Identities=14% Similarity=0.159 Sum_probs=129.6
Q ss_pred hHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcC---
Q 000050 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCME--- 2423 (2622)
Q Consensus 2349 ~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L~~~~~--- 2423 (2622)
.++..|+..+.++|+.-|...-..|..+..+.... ..-.+..|-+.+.....+. -.++- -..+++|.+...+.
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R~~Irk~i~nif~~fi~e~e~~nGIa-eLLeilgSIinGfa~PL 239 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTT-HHHHHHHHHHHHHHHHHTCSCCSCHH-HHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCHH-HHHHHHHHHHhccCCCC
Confidence 47778888888888888887777777776554221 1223344444444443322 11121 23455566554432
Q ss_pred chHHHHHHHH-HHhhcCCCCchhhH-hHHHHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000050 2424 DGQLADLLQE-LLNLASSPSWAARH-GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2622)
Q Consensus 2424 ~~~~~~~l~~-ll~~~~~~~~~~r~-~~~~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2622)
.++...++.. ++.....+....-+ ..+.++...+...| .+.+.++..|..+|=..+..-.---+.-+..++.
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp------~L~~~vi~~LLk~WP~tns~KevlFL~eleeile 313 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS------TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG------GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc------HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 1234444444 34444444433222 13344455555444 3556788888888877665555555556666665
Q ss_pred hhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHHH-----HHhhCchhhhhhHhhHHHHHHhhhcCC-cchhhc
Q 000050 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS-----VAKANPSAIMVHVALFGPALAECLKDG-STPVRL 2575 (2622)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~~-----~a~~~~~~v~~~l~~l~p~l~~~~~~~-~~~vk~ 2575 (2622)
..... ++.+...++...+..++++.+..|-..|+...+. +...+. ...++.+.|+|++..+.. |..||.
T Consensus 314 ~~~~~--ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~---~~IlPii~p~L~~~s~~HWn~~V~~ 388 (449)
T 2npp_B 314 VIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA---AKILPIMFPSLYRNSKTHWNKTIHG 388 (449)
T ss_dssp TCCHH--HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH---HHHHHHHHHHHTSCTTCCSSTTHHH
T ss_pred hCCHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhch---hhhHHhhHHHHHHHHHHhcCHHHHH
Confidence 54321 1223455677777788899999998888876541 111121 123355666666665554 889999
Q ss_pred hhHHHHHHHhcccc
Q 000050 2576 AAERCAVHAFQLTR 2589 (2622)
Q Consensus 2576 aae~a~~~~~~~~~ 2589 (2622)
.+.+++-.+.++-.
T Consensus 389 la~~vlk~l~e~d~ 402 (449)
T 2npp_B 389 LIYNALKLFMEMNQ 402 (449)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCH
Confidence 99988876665544
No 129
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=66.59 E-value=58 Score=39.03 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHH-hhcCC--CCHhhH-HHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000050 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR-IIGDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2622)
Q Consensus 2244 ~~r~~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~-~l~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~l~~L~~~ll 2319 (2622)
.+|....+.+...++.+. ..+.....+++||+. +|+|. ..++.| ...|.++..++.+.+..+.|.+|.+...+.
T Consensus 44 ~vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VF 121 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 121 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567777888888887764 233344666777764 44431 223344 357788889999999999999998877655
Q ss_pred HH----hCC---CCHHHHHHHHHHHHHHHhc--------c-cChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcC
Q 000050 2320 KC----LQD---STRTVRSSAALALGKLSAL--------S-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2622)
Q Consensus 2320 k~----L~d---~~~~vR~~Aa~aLg~L~~~--------~-~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2622)
.| ..+ +.++.|..-.+-|..+... . ..+..++..++.+++.++..+.+..+..+.+++.+..
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 43 443 3799999998888887542 2 2355677888888988899999999999999988764
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=66.25 E-value=46 Score=37.97 Aligned_cols=139 Identities=7% Similarity=0.008 Sum_probs=83.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 000050 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2622)
Q Consensus 1341 ~Ll~~L~~~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ 1420 (2622)
.++..|..++-.+.|..|+..+....+.+. ...++.+...+....+|..-...+.+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 444555555556677777766654322211 134555666776666887666443333333222 2223
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000050 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2622)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~ 1495 (2622)
+.+.+.....|++..+|..|..+. +..........+++.+-..+.++++.++++....|..++...|+....
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 556677888899999998886644 222222234555665555778888999999999998888776665443
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.07 E-value=33 Score=36.04 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=51.6
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000050 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2622)
.+.+..+.+-+.++ ++++..-|+..++.+...+|..|...+ ...+.-+...+...++.|++.....+..-...
T Consensus 41 k~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 41 KDCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 36778888888876 899999999999999999998776544 23444444444446678888776666555443
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=63.92 E-value=53 Score=34.45 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=61.7
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~d~d~~V~~~a~~aL~~l~~~~ 2184 (2622)
+.+....+..+.+.+++.++.+...|+.++..+.++++..+...+ .+.+..+..++...++.|++.+.+.+.......
T Consensus 37 ~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 37 RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 456778888899999999999999999999999999886654333 456666666666678899998888777776554
Q ss_pred Cc
Q 000050 2185 PK 2186 (2622)
Q Consensus 2185 ~~ 2186 (2622)
+.
T Consensus 117 ~~ 118 (140)
T 3ldz_A 117 KN 118 (140)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 133
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=63.80 E-value=1.3e+02 Score=37.80 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHhhcCCCCHhhHHHHHHHHH--HHHHhcCCCccCchHHHHHHHHHHh---
Q 000050 2248 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTFIKCL--- 2322 (2622)
Q Consensus 2248 ~aa~~L~~l~~~~~~~~l~p~v~~i~~~Li~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~l~~L~~~llk~L--- 2322 (2622)
.-..-+..+.+.+++..+...+..+..-+.+.+... +.+|-..|+..+. .+..-+ ......+.+.+...+
T Consensus 303 lFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHHHHH
Confidence 344567888888888888888777777777888763 6777777776654 222211 122334445555444
Q ss_pred -CC-CCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhh
Q 000050 2323 -QD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 2358 (2622)
Q Consensus 2323 -~d-~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l 2358 (2622)
.. -|..||..|..++..+..+++ .++.+.....
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e~d~---~lf~~c~~~~ 412 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFMEMNQ---KLFDDCTQQF 412 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHH
Confidence 22 388999999999998877664 3444444433
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=60.52 E-value=50 Score=34.97 Aligned_cols=74 Identities=16% Similarity=0.059 Sum_probs=55.4
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHH
Q 000050 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMM 1448 (2622)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~ 1448 (2622)
.+.+..|.+-++++ |+++..-|+..++.+...+|..|...+. .++.-+...+.+ .+..||+.+...+..-.
T Consensus 37 k~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 36777788888876 8999999999999999999987866653 566666766654 36788887766665554
Q ss_pred Hhh
Q 000050 1449 SQL 1451 (2622)
Q Consensus 1449 ~~l 1451 (2622)
..+
T Consensus 116 ~~f 118 (148)
T 1mhq_A 116 VWF 118 (148)
T ss_dssp HHC
T ss_pred HHc
Confidence 433
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=60.11 E-value=48 Score=35.79 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=51.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~ 1450 (2622)
+.+..|.+-+.++ |+++..-|+..++.+...+|..|...+. .++.-+...+.. .++.||+.+...+..-...
T Consensus 52 eA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 52 DCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 6777888888876 8999999999999999999987765443 344444444433 5678888876665554443
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.76 E-value=58 Score=34.52 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=54.4
Q ss_pred hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHH
Q 000050 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMM 1448 (2622)
Q Consensus 1377 ~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~ 1448 (2622)
.+.+..|.+-+.++ |+++...|+..++.+...+|..|...+. .++.-+...+.+ .++.||+.....+..-.
T Consensus 47 k~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 36778888888876 8999999999999999999987765543 456666666654 45778877766665554
Q ss_pred Hhh
Q 000050 1449 SQL 1451 (2622)
Q Consensus 1449 ~~l 1451 (2622)
..+
T Consensus 126 ~~f 128 (149)
T 3g2s_A 126 VGL 128 (149)
T ss_dssp HHC
T ss_pred HHh
Confidence 433
No 137
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=58.11 E-value=1.1e+02 Score=36.66 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=76.8
Q ss_pred ccCCChhhHH-HHHHHHHHhhhhhCcchhhhHHhHHHHHHhh----cC---CCChHHHHHHHHHHHHHHHH-------hh
Q 000050 1705 CSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDG----LA---DENESVRDAALGAGHVLVEH-------YA 1769 (2622)
Q Consensus 1705 l~~~~~~vR~-~al~~l~~L~~~~g~~f~p~l~~ii~~ll~~----L~---d~~~~VR~~al~al~~lv~~-------~~ 1769 (2622)
.+...+..|+ ..+.++..+...+|..+.|+++.++..+..+ +. ++.++.|..=..-++.+..+ ++
T Consensus 82 Y~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp 161 (321)
T 1w9c_A 82 YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP 161 (321)
T ss_dssp HHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 3344455553 5678888888899988889988877776544 44 36688998888888777654 35
Q ss_pred hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000050 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2622)
Q Consensus 1770 ~~~i~~llp~l~~~l~d~~~rvR~~a~~ll~~ll~~~ 1806 (2622)
+.....++..+.-+..+....+-..+++.+-+++..+
T Consensus 162 ~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 162 PTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888999888888664
No 138
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=55.32 E-value=3.4e+02 Score=32.62 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-ccc--chhHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKL-GRL--FEPYVI---QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~-~~~--~~~~v~---~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2622)
+++..|...+..= ++..|.-+...|..+...- |.. ...|+. +++..++.+..+++. --.+...++.|+..-
T Consensus 78 dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di--Al~~G~mLRecir~e 154 (341)
T 1upk_A 78 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI--ALNCGIMLRECIRHE 154 (341)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT--HHHHHHHHHHHHTSH
T ss_pred CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh--HhHHHHHHHHHHHhH
Confidence 4555555555544 6777887777777766532 211 223443 677888888776632 222233333332210
Q ss_pred c--HHh-HHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhC----chhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000050 1452 S--AQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2622)
Q Consensus 1452 ~--~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~----p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2622)
. ..- ....+-.+++.++.++..+-..|...+..+.... .+.+...+..++...-+++..++--.|..+.+-||
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 0 000 0123335667778888888888888887776543 34456667788888888888888888999999998
Q ss_pred HHhhh
Q 000050 1525 QVGSV 1529 (2622)
Q Consensus 1525 ~l~~~ 1529 (2622)
.+.-.
T Consensus 235 elLld 239 (341)
T 1upk_A 235 ELLLD 239 (341)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88643
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=52.06 E-value=69 Score=34.83 Aligned_cols=73 Identities=18% Similarity=0.070 Sum_probs=54.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000050 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2622)
Q Consensus 1378 ~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2622)
+.+..|.+-+.++ |+++..-|+..++.+...||..|...+. .++.-+...+.. .+..||+.+...+..-..
T Consensus 50 ~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777888888877 8999999999999999999987765543 456666666642 357888887766665544
Q ss_pred hh
Q 000050 1450 QL 1451 (2622)
Q Consensus 1450 ~l 1451 (2622)
.+
T Consensus 129 ~f 130 (171)
T 1juq_A 129 AL 130 (171)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.59 E-value=89 Score=33.44 Aligned_cols=106 Identities=9% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000050 1338 LVSRLLDQLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2622)
Q Consensus 1338 ~i~~Ll~~L~~----~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~ 1413 (2622)
.++.+++..++ ++||.. ...+..+++.- ... ..+.+..|.+-+++..|+++..-|+..++.+...+|..
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~----~leicD~I~~~-~~~--~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~ 88 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWAL----NMEICDIINET-EEG--PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR 88 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHH----HHHHHHHHHHS-SSH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHcCCCCCCcCHHH----HHHHHHHHhCC-Ccc--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 34455555554 345543 33444444432 122 23677888888875448999999999999999999987
Q ss_pred chhHHH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHh
Q 000050 1414 FEPYVI--QMLPL-LLVAFS---DQVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1414 ~~~~v~--~ilp~-ll~~l~---D~~~~VR~aa~~al~~i~~~ 1450 (2622)
|...+. .++.- +...+. ++...||+.+...+..-...
T Consensus 89 fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 89 FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 766543 35554 455553 45568888876666555443
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.07 E-value=79 Score=34.06 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=61.3
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~d-~d~~V~~~a~~aL~~l~~~ 2183 (2622)
..+....+..|.+.+++.++.+...|+.++..+.++++..+...+ .+++..|..++.. .++.|+..+.+.+......
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 356778888899999999999999999999999999886554332 4466666666654 6789999988888777765
Q ss_pred cCc
Q 000050 2184 VPK 2186 (2622)
Q Consensus 2184 ~~~ 2186 (2622)
.+.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 554
No 142
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.21 E-value=2.1e+02 Score=34.41 Aligned_cols=140 Identities=12% Similarity=0.068 Sum_probs=85.7
Q ss_pred CHhhHHHHHHHHHHHHHhcCCCccCchH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccC------hhhHHHHHHHh
Q 000050 2285 PWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR------VDPLVGDLLSS 2357 (2622)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~l~-~L~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~------~~~ll~~Ll~~ 2357 (2622)
+...+.-++..|..+...-......|+. +=...+++...+.+.....-+..||+.++.+... -..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 4445666666676655432222222221 1244566777777889999999999999775211 23466677777
Q ss_pred hhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHH-----------HHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhcC
Q 000050 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR-----------VYSVLKDLVY---HDDDHVRVSAASILGIMSQCME 2423 (2622)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~-----------i~~~L~~~l~---~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2622)
+.+.+..|...+++-|..++.....+. .-.... .|..|...+. ..+..+...+..+|.++....|
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 776778888888888877776542221 111111 1445556665 4577777777777877777766
Q ss_pred ch
Q 000050 2424 DG 2425 (2622)
Q Consensus 2424 ~~ 2425 (2622)
+.
T Consensus 290 d~ 291 (339)
T 3dad_A 290 DQ 291 (339)
T ss_dssp SH
T ss_pred Ch
Confidence 53
No 143
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=49.16 E-value=1.3e+02 Score=31.07 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 000050 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 2394 (2622)
Q Consensus 2315 ~~~llk~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~ 2394 (2622)
....+..|+++.+.+...+..|+.+. ...+.++.-+.+.++...+..|-..+..+..+++.++......+.+.+..
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~----~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~ 85 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENK----KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD 85 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 33445567766778888888877643 34456677777778777888899999999999998876655667766666
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHHh--hcCch
Q 000050 2395 VLKDLVYH-DDDHVRVSAASILGIMSQ--CMEDG 2425 (2622)
Q Consensus 2395 ~L~~~l~~-~~~~vr~~aa~~Lg~L~~--~~~~~ 2425 (2622)
.+...+.. .+++.|.....++...-. ++|++
T Consensus 86 ~l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~~ 119 (132)
T 4flb_A 86 VLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEE 119 (132)
T ss_dssp THHHHHHTTCSTTTHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCCcCHH
Confidence 66555543 245566666677766653 45553
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.27 E-value=82 Score=34.23 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=62.7
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~d------~d~~V~~~a~~aL~ 2178 (2622)
..+....+..|.+.+++.++.+...|+.++..+.++++..+...+ .+++..|..++.. .+..|++.+.+.+.
T Consensus 45 ~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999876554322 4667777777752 36789999998888
Q ss_pred HHHhhcCc
Q 000050 2179 RVVASVPK 2186 (2622)
Q Consensus 2179 ~l~~~~~~ 2186 (2622)
......+.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 88776654
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.45 E-value=1.3e+02 Score=34.40 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=64.3
Q ss_pred HHHHHHHHhcC----CChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000050 1339 VSRLLDQLMKS----DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2622)
Q Consensus 1339 i~~Ll~~L~~~----~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~ 1414 (2622)
++.+++..++. +||. ....+..+++.- ... ..+.+..|.+-+.++ |+++...|+..++.+...+|..|
T Consensus 9 ~~~~i~kAT~~~~~~~dw~----~ileicD~I~~~-~~~--~k~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWE----SILQICDLIRQG-DTQ--AKYAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHH----HHHHHHHHHHTT-SSC--HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCcCHH----HHHHHHHHHhCC-Ccc--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHH
Confidence 34455555443 3554 344455555432 121 236788888888876 89999999999999999999766
Q ss_pred hhHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhh
Q 000050 1415 EPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQL 1451 (2622)
Q Consensus 1415 ~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l 1451 (2622)
...+. ..+..+...++ ..++.|++.+...+..-...+
T Consensus 81 ~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 55432 23333333332 345678887766665554433
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.13 E-value=2.2e+02 Score=29.98 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=52.6
Q ss_pred hHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhh--hhhHHHHhhhhcC------CCHHHHHHHHHHHHHHhhhc
Q 000050 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGSVI 1530 (2622)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L--~~ivp~L~~~L~D------~~~~VR~aA~~aL~~l~~~~ 1530 (2622)
.+..+...+.+.+..+..-|+.+|..+...|...+...+ ..++..|.+++.+ +++.||..+...+...+..+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334445556677778888888999888887776543222 3455666666653 57899999999999998877
Q ss_pred CC
Q 000050 1531 KN 1532 (2622)
Q Consensus 1531 ~~ 1532 (2622)
++
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 147
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=42.20 E-value=1.1e+02 Score=31.38 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=59.4
Q ss_pred hhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchhhhhhhhhhHHHHhhhhcCCCHHHHHHHHHHHHHHhhh
Q 000050 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2622)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2622)
.++...+..++|.|+..|++-+|.+....+..|..+- ..++|.+.++++..+..-. .+.|..+...
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 3455677899999999999999999888888876532 3566777777765555433 3455555555
Q ss_pred cCChhHHhHHHHHHhhcCCCC
Q 000050 1530 IKNPEIASLVPTLLMGLTDPN 1550 (2622)
Q Consensus 1530 ~~~~~i~~ilp~Ll~~l~d~~ 1550 (2622)
++..-...+.+.|.+....|+
T Consensus 89 ~~~~~~~~l~~eL~rl~~~pt 109 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSSLEI 109 (134)
T ss_dssp CCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 544445667777777776664
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.11 E-value=1.7e+02 Score=30.80 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhH--HhHHHHHHhhcCC------CCh
Q 000050 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENE 1751 (2622)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l--~~ii~~ll~~L~d------~~~ 1751 (2622)
..+.+++..-+ ..-.+.+..|.+.+++.++.+.-.++.++..+...+|..|...+ ..++..+.+.+.+ .+.
T Consensus 23 leicD~I~~~~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 23 QNFCEQVNTDP-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHSS-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHcCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 34444444322 22345566777778899999999999999999999999887665 3477777777764 367
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000050 1752 SVRDAALGAGHVLVEHY 1768 (2622)
Q Consensus 1752 ~VR~~al~al~~lv~~~ 1768 (2622)
.|+.-++..+..-...+
T Consensus 102 ~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 88887776665544444
No 149
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=41.10 E-value=1e+03 Score=34.19 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=87.0
Q ss_pred HhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCchHHHH---HHH
Q 000050 2356 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD---LLQ 2432 (2622)
Q Consensus 2356 ~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~---~l~ 2432 (2622)
..+++.++.++.........+.... +..+.+.|+..|....-+.+..-...|..+|..++...|. .+.+ ++.
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~-~l~~~a~~l~ 481 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFF----DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS-AMRLNAAFVK 481 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-HHhHHHHHHH
Confidence 3346778888888887777777654 2345777777776665555555566788889988876654 3333 455
Q ss_pred HHHhhcCCCCchhhHhHHHHHHHHHh-hCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000050 2433 ELLNLASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2622)
Q Consensus 2433 ~ll~~~~~~~~~~r~~~~~~L~~~l~-~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2622)
.++..+.+-+....+.....++.+.- ..+. -.....+++.=.+.+.+.+.+..++.-++.+.-.++.+-
T Consensus 482 giLD~l~~l~~~QiRklf~iL~~laf~~~~~--~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~ 551 (1323)
T 3s4w_B 482 GILDYLENMSPQQIRKIFCILSTLAFSQQPG--TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIM 551 (1323)
T ss_dssp GGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC--cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHH
Confidence 45544433333323334444444332 2222 122456778778888999999888888777666655543
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.10 E-value=2.3e+02 Score=32.25 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred ChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHh
Q 000050 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVA 2182 (2622)
Q Consensus 2106 ~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~ 2182 (2622)
++.+....+..|.+.+++.++.+...|+.++..+.++.+..+-..+ .+++..|..+++ ..+..|++.+.+.+.....
T Consensus 39 ~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 39 GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999998876443221 344555555554 4678899999888888776
Q ss_pred hcCcc
Q 000050 2183 SVPKE 2187 (2622)
Q Consensus 2183 ~~~~~ 2187 (2622)
..+.+
T Consensus 119 ~f~~~ 123 (226)
T 3zyq_A 119 AFRNE 123 (226)
T ss_dssp HTTTC
T ss_pred HhCCC
Confidence 65443
No 151
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.35 E-value=6.4e+02 Score=30.31 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hH---HhhHHHHHhh
Q 000050 1392 SAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV---KLVLPSLLKG 1466 (2622)
Q Consensus 1392 ~~~~R~~al~al~~La~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v---~~ilp~Ll~~ 1466 (2622)
+...+.-+++-|..+...-.+....++. +=+..++....+.+.+...-+..|+..+|...... ++ ..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 3455556666665533322222222332 34666777777778888888999999998864443 22 3344455555
Q ss_pred ccCCChhhHHHHHHHHHHHHhhCchhhh---hhhh--------hhHHHHhhhhc---CCCHHHHHHHHHHHHHHhhhcCC
Q 000050 1467 LEDKAWRTKQSSVQLLGAMAYCAPQQLS---QCLP--------KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKN 1532 (2622)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~la~~~p~~l~---~~L~--------~ivp~L~~~L~---D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2622)
+.+....+-+.|+.+|..++...+.... .... ..+..++..|+ ..+.+++..|..-+..+....++
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 6666677888899999888765432211 1011 12445666665 46778887777777666655544
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.74 E-value=1.1e+02 Score=31.77 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=42.9
Q ss_pred HHHHHHHhchhHHHhHhHHHHHhccCCChhhHHHHHHHHHHhhhhhCcchhhhHHhHHH
Q 000050 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2622)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~p~l~~ii~ 1740 (2622)
|+.+......+.+.++++.|.+.+++.++.++--++.++.+++..-.+.|...+..=+.
T Consensus 35 IA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 35 ICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 34433333334568899999999999999999999999999987766777666554333
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.94 E-value=1.5e+02 Score=33.77 Aligned_cols=102 Identities=9% Similarity=0.071 Sum_probs=62.5
Q ss_pred HHHHHHHhc----CCChHHHHHHHHHHHHHHhhhCccchhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000050 1340 SRLLDQLMK----SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2622)
Q Consensus 1340 ~~Ll~~L~~----~~~~~~r~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~ 1415 (2622)
+.+++..++ ++||.. ...+..+++.- +.. ..+.+..|.+-+.++ |+++..-|+..++.+...+|..|.
T Consensus 7 ~~~ie~AT~~~~~~~dw~~----~leicd~i~~~-~~~--~k~a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 7 CKNLENATSHLRLEPDWPS----ILLICDEINQK-DVT--PKNAFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp HHHHHHHHCTTCSSCCHHH----HHHHHHHHHTT-SSC--HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHcCCCCCCcCHHH----HHHHHHhhcCC-CcC--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHH
Confidence 444444443 346653 33344444422 222 336777888888876 899999999999999999997675
Q ss_pred hHHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Q 000050 1416 PYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMS 1449 (2622)
Q Consensus 1416 ~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~ 1449 (2622)
..+. .++..+...++ ..+..||+.+...+..-..
T Consensus 79 ~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 79 EEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5432 23333333333 4567888777666555443
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=34.64 E-value=1e+02 Score=32.10 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred hcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-----cCC------ChhHHHHHHHH
Q 000050 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL-----SDS------DSTTVAAAWEA 2176 (2622)
Q Consensus 2108 ~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~~~il~~L~~~l-----~d~------d~~V~~~a~~a 2176 (2622)
+..+.+|+.|.+++.+.++.+..-|+.+|..++.+....+...+..-...+-.+. .|+ ...||..|-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 4468999999999999999999999999999998776655544433332222221 121 14788888888
Q ss_pred HHHHHh
Q 000050 2177 LSRVVA 2182 (2622)
Q Consensus 2177 L~~l~~ 2182 (2622)
+..+..
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 777754
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.34 E-value=4.4e+02 Score=27.96 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=58.6
Q ss_pred hhcHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHhhccccccccH--HHHHHH-HHHHhc---CCChhHHHHHHHHHHH
Q 000050 2107 EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLS---DSDSTTVAAAWEALSR 2179 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~-d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~-L~~~l~---d~d~~V~~~a~~aL~~ 2179 (2622)
+.+....+..|.+.++ +.++.+...|+.++..+.++++..+...+ .+++.. |+..+. +++..|++.+.+.+..
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4567888889999997 58899999999999999999886654432 456666 566663 3456888888877777
Q ss_pred HHhhcC
Q 000050 2180 VVASVP 2185 (2622)
Q Consensus 2180 l~~~~~ 2185 (2622)
......
T Consensus 128 W~~~f~ 133 (157)
T 1elk_A 128 WADAFR 133 (157)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 665443
No 156
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=33.88 E-value=8.3e+02 Score=30.90 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000050 2393 YSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2622)
Q Consensus 2393 ~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2622)
-..+++++.++|+.||..|..|++++..
T Consensus 449 K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 449 KADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3445667778888888888888777653
No 157
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=33.71 E-value=3e+02 Score=31.36 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=76.7
Q ss_pred HHHHHcCCCCHHHHHHHHhhhHhhHhhhccchHHHHHHHHHHHhcCCChHHHHHHH-HHHHHHHhhhCccchhhhcHHHH
Q 000050 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA-FGLAGVVKGFGISSLKKYGIAAT 1382 (2622)
Q Consensus 1304 ~L~~~l~~~~~~Vq~~a~~~L~~lv~~~~~~~~~~i~~Ll~~L~~~~~~~~r~~Aa-~~L~~l~~~lg~~~l~~~~i~~~ 1382 (2622)
.+...+.++..|.|..+...+....+...+.....+..++ ...++|..-+..+ ..++.++...+. .+.+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l---~~~~nWd~~D~~a~~~~g~~~~~~p~------~~~~~ 135 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELI---VTKSWWDSVDSIVPTFLGDIFLKHPE------LISAY 135 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHH---TSSCCHHHHHHHTTTHHHHHHHHCGG------GGGGT
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---ccCCChHHHHHhhHHHHHHHHHHCHH------HHHHH
Confidence 4455666777888888887776443333322222333332 2456787765543 444555543221 24456
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000050 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2622)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~La~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~ 1450 (2622)
+.+++.+++.|. |..|+.++ ++.........+++.+...+.|++..||.+..-+++.+...
T Consensus 136 l~~W~~s~~~w~-rR~ai~~~------l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 136 IPKWIASDNIWL-QRAAILFQ------LKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp HHHHHHSSCHHH-HHHHHHTT------TTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCchHH-HHHHHHHH------HHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 778888884454 44454322 22112223345667777788999999999999999888655
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=30.86 E-value=3.4e+02 Score=33.45 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHhhcC---
Q 000050 2348 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS-AASILGIMSQCME--- 2423 (2622)
Q Consensus 2348 ~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~-aa~~Lg~L~~~~~--- 2423 (2622)
..++..|+..+.++|+.-|......|..+..+....- .-.+..|-+.+.....+.+.-.-.+ ..+++|.+...+.
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R-~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Q ss_pred chHHHHHHHH-HHhhcCCCCchhhHhHH-HHHHHHHhhCCccccCChhHHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000050 2424 DGQLADLLQE-LLNLASSPSWAARHGSV-LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2622)
Q Consensus 2424 ~~~~~~~l~~-ll~~~~~~~~~~r~~~~-~~L~~~l~~~~~~i~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2622)
.++...++.. ++.....+....-+.-. .++...+...| .+.+.++..+.++|=..+..-.---+.-+..++.
T Consensus 252 Keehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp------~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe 325 (392)
T 2jak_A 252 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS------TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 325 (392)
T ss_dssp CHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG------GGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc------hhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q ss_pred hhhhcCCCCchhhHhHHHHHHhhcCCCCHHHHHHHHHHHH--HHHhhCchhhhhhHhhHHHHHHhhhc
Q 000050 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK--SVAKANPSAIMVHVALFGPALAECLK 2567 (2622)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~l~~~l~d~s~dvr~~a~~~l~--~~a~~~~~~v~~~l~~l~p~l~~~~~ 2567 (2622)
.... .++.+...++...+.+++++.+..|-..|+...+ .+..--.+.....++.+.|+|+++.+
T Consensus 326 ~~~~--~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~ 391 (392)
T 2jak_A 326 VIEP--SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 391 (392)
T ss_dssp TCCH--HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC-------
T ss_pred hCCH--HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhc
No 159
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=29.92 E-value=1.5e+03 Score=32.65 Aligned_cols=113 Identities=9% Similarity=0.072 Sum_probs=83.3
Q ss_pred cchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhhHHHHHhhccCCChhhHHHHHHHHHHHHhhCchh
Q 000050 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2622)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~la~~~p~~ 1492 (2622)
.+.+|+..++...-.++...++.||+-+......++.....+.-..++..++....++.-.....|+.+|..++...|+.
T Consensus 393 vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~ 472 (1323)
T 3s4w_B 393 VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASA 472 (1323)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHH
Confidence 35677777777777788888999999999999999998877777889999988877776666677899999999887877
Q ss_pred hhhhhhhhHHHHhhhhcCCC-HHHHHHHHHHHHHHh
Q 000050 1493 LSQCLPKIVPKLTEVLTDTH-PKVQSAGQTALQQVG 1527 (2622)
Q Consensus 1493 l~~~L~~ivp~L~~~L~D~~-~~VR~aA~~aL~~l~ 1527 (2622)
+..+ ..++..++..+.+-+ ..+|.. ..-|..++
T Consensus 473 l~~~-a~~l~giLD~l~~l~~~QiRkl-f~iL~~la 506 (1323)
T 3s4w_B 473 MRLN-AAFVKGILDYLENMSPQQIRKI-FCILSTLA 506 (1323)
T ss_dssp HHHT-HHHHHGGGGGGGGCCHHHHHHH-HHHHHHHH
T ss_pred HhHH-HHHHHHHHHhhcCCCHHHHHHH-HHHHHHHH
Confidence 6553 334555666666644 345544 44454444
No 160
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=29.67 E-value=16 Score=30.68 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=12.2
Q ss_pred cchhhhHhhhcChhHHH
Q 000050 252 VLPASIKMLKRNPEIIL 268 (2622)
Q Consensus 252 ilP~~eKalLRsPE~~l 268 (2622)
||-.=.-+||||||++=
T Consensus 20 VLNqKk~SLLRsPEVI~ 36 (62)
T 2kw3_C 20 VLNQKRLSLLRSPEVVQ 36 (62)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCHHHHH
Confidence 44444568999999964
No 161
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.41 E-value=3.8e+02 Score=27.98 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHhhhcCCHhHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000050 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2622)
Q Consensus 2346 ~~~~ll~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2622)
....++..+-+.++...+..+-..+.-+..|+.++|......+...+.+.+.......++.+|....+++...-..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 3445666666677777888999999999999999987665555566667776666667889999999999888743
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.28 E-value=5.9e+02 Score=28.64 Aligned_cols=79 Identities=9% Similarity=0.041 Sum_probs=58.4
Q ss_pred hhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000050 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2622)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~l~~~~--~~il~~L~~~l~-d~d~~V~~~a~~aL~~l~~~ 2183 (2622)
+.+....+..|.+.+++.++.+...|+.++..+.++.+..+...+ .+.+..|..++. ..+..|++.+.+.+......
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999998875543221 345555555554 45788998888777776655
Q ss_pred cC
Q 000050 2184 VP 2185 (2622)
Q Consensus 2184 ~~ 2185 (2622)
..
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 44
No 163
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.65 E-value=3.8e+02 Score=27.35 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=56.2
Q ss_pred HhhhHHHHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc----c
Q 000050 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY----L 2147 (2622)
Q Consensus 2072 l~~il~~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~d~~~~vR~~A~~~L~~l~~~~~~~----l 2147 (2622)
+...+...++.|....+.++..+.+|+... ++...++..+.+.+....+..|...++++..++.++... +
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 445556666777766677888887777543 345566777777777777889999999999998876432 3
Q ss_pred cccHHHHHHHHHHHh
Q 000050 2148 VDEAPNMISTLIVLL 2162 (2622)
Q Consensus 2148 ~~~~~~il~~L~~~l 2162 (2622)
.+.+...++..+...
T Consensus 80 ~~~f~~~l~~~~~~~ 94 (132)
T 4flb_A 80 RESFADVLPEAAALV 94 (132)
T ss_dssp HHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444444
No 164
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=23.56 E-value=1.1e+03 Score=29.05 Aligned_cols=247 Identities=13% Similarity=0.120 Sum_probs=117.4
Q ss_pred CChhhHHhHHHHHHHHHHhh--ChhhHHHhHH-hHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-hh-hhhhH-HHH
Q 000050 1935 PSASRRQGVCIGLSEVMASA--GKSQLLSFMD-ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-QA-IDEIV-PTL 2008 (2622)
Q Consensus 1935 ~~~~vR~~a~~~L~~li~~~--~~~~l~~~l~-~ll~~l~~~L~d~d~~VR~~A~~al~~l~~~~g~-~~-~~~il-p~L 2008 (2622)
+.+..-+-+...+..++.+. .+.....|++ .++-.+...+..+|++-|+.....+.+++..+.. .. +...+ ..+
T Consensus 96 ~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif 175 (403)
T 3fga_B 96 AAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 175 (403)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444444555555555432 2222333443 3566677888889999999888888877654321 11 11111 111
Q ss_pred HHhccc-C--CchhHHHHHHHHHHhhhc--------cccccchhhhhhcCCCchHHHHHHHHHHHHhCCChhhhHhhhHH
Q 000050 2009 LHALED-D--QTSDTALDGLKQILSVRT--------TAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILP 2077 (2622)
Q Consensus 2009 l~~L~~-~--~~~~~aL~~L~~il~~~~--------~~ilp~Lip~L~~~~~~~~~~~aL~sLa~~~g~~l~~~l~~il~ 2077 (2622)
..-+-. + ..-...|+.+..++..-+ ......|+|.-..+........-..++......+ ......++.
T Consensus 176 ~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~L~~~vi~ 254 (403)
T 3fga_B 176 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-STLTEPVVM 254 (403)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GGGHHHHHH
T ss_pred HHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 111111 1 111334555555553311 0112334454443333322211111111110000 111233444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhhccChhcHH----HHHHHHHhhcCCCChhHHHHHHHHHHH--HHhhccccccccH
Q 000050 2078 ALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVE----SLVSELLKGVGDNQASIRRSSAYLIGY--FYKNSKLYLVDEA 2151 (2622)
Q Consensus 2078 ~Ll~~l~~~~~~vr~~a~~al~~l~~~~~~~~l~----~ll~~Ll~~l~d~~~~vR~~A~~~L~~--l~~~~~~~l~~~~ 2151 (2622)
.+++..-..+..-...-+.-+..++..+++..+. ++...+...+.+++..|-..|+..+.. +.. -+.++.
T Consensus 255 ~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~----li~~n~ 330 (403)
T 3fga_B 255 ALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMS----LISDNA 330 (403)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHH----HHHTTH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHH----HHHHhH
Confidence 4454443334333333444556666666655444 455555666677777776666644321 111 112333
Q ss_pred HHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHhhcCc
Q 000050 2152 PNMISTLIVLL-----SDSDSTTVAAAWEALSRVVASVPK 2186 (2622)
Q Consensus 2152 ~~il~~L~~~l-----~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2622)
..+++.++..+ ...+..|+..+..++..+....++
T Consensus 331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 44555544443 256899999999999988765544
No 165
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.02 E-value=5.5e+02 Score=26.76 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=52.8
Q ss_pred hhhHHHHHhhhcCCCChhhHHhHHHHHHHHHHhhChhhHHHhHHhHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000050 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2622)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~d~~VR~~A~~al~~l~ 1993 (2622)
.+.++..+.+.+....++.+..+++.+..++.++++.....|...+.+.+.......++.+|..-.+.+....
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4566666666666677899999999999999988876555555666666666666667888877666665554
Done!