Query 000051
Match_columns 2612
No_of_seqs 721 out of 3903
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 1.8E-55 3.9E-60 539.1 41.9 561 1201-1767 3-565 (569)
2 KOG1824 TATA-binding protein-i 100.0 6.4E-46 1.4E-50 458.6 85.4 1013 1497-2604 45-1204(1233)
3 KOG2171 Karyopherin (importin) 100.0 7.7E-45 1.7E-49 469.2 77.5 907 1057-2032 4-1003(1075)
4 KOG2171 Karyopherin (importin) 100.0 3.9E-40 8.4E-45 425.8 87.7 866 1132-2166 6-939 (1075)
5 KOG1824 TATA-binding protein-i 100.0 3.5E-35 7.5E-40 364.1 88.1 1084 1295-2502 42-1187(1233)
6 PF12074 DUF3554: Domain of un 100.0 2.4E-35 5.3E-40 372.1 27.2 318 346-692 1-339 (339)
7 KOG1241 Karyopherin (importin) 100.0 2.3E-32 4.9E-37 335.6 48.2 661 1058-1769 2-766 (859)
8 KOG2023 Nuclear transport rece 100.0 7.3E-29 1.6E-33 298.6 54.5 767 1508-2417 22-854 (885)
9 KOG2023 Nuclear transport rece 100.0 3.9E-27 8.6E-32 283.8 50.2 747 1134-1966 17-871 (885)
10 PLN03200 cellulose synthase-in 100.0 2E-22 4.4E-27 282.9 104.6 1314 1133-2553 16-1606(2102)
11 KOG1241 Karyopherin (importin) 100.0 6.1E-25 1.3E-29 270.7 61.6 737 1510-2425 12-816 (859)
12 PLN03200 cellulose synthase-in 100.0 9.3E-21 2E-25 266.4 107.0 1350 1132-2547 101-1681(2102)
13 KOG0915 Uncharacterized conser 100.0 1.7E-22 3.7E-27 264.7 67.8 589 1921-2568 816-1451(1702)
14 COG5215 KAP95 Karyopherin (imp 99.9 2E-22 4.3E-27 239.0 56.6 644 1055-1745 2-731 (858)
15 KOG0213 Splicing factor 3b, su 99.9 1.1E-20 2.5E-25 229.4 59.5 675 1216-1993 365-1064(1172)
16 KOG0915 Uncharacterized conser 99.9 1.3E-19 2.9E-24 238.0 73.9 825 1384-2340 540-1508(1702)
17 KOG0213 Splicing factor 3b, su 99.9 2.8E-20 6E-25 226.1 55.0 719 1428-2269 371-1118(1172)
18 KOG1242 Protein containing ada 99.9 2.3E-21 5E-26 239.8 35.7 471 1591-2097 71-558 (569)
19 COG5215 KAP95 Karyopherin (imp 99.9 1.3E-17 2.7E-22 198.7 62.1 665 1620-2428 95-817 (858)
20 COG5181 HSH155 U2 snRNP splice 99.9 4.2E-18 9.1E-23 203.8 48.7 666 1225-1992 177-868 (975)
21 COG5181 HSH155 U2 snRNP splice 99.9 5.5E-18 1.2E-22 202.8 49.3 749 1428-2312 176-958 (975)
22 KOG0211 Protein phosphatase 2A 99.8 6.5E-17 1.4E-21 212.3 43.1 558 1349-1995 93-665 (759)
23 KOG0211 Protein phosphatase 2A 99.6 4.4E-13 9.4E-18 176.7 40.3 530 1252-1802 119-662 (759)
24 KOG0212 Uncharacterized conser 99.6 1.2E-12 2.6E-17 158.1 37.0 424 1425-1918 5-448 (675)
25 KOG1943 Beta-tubulin folding c 99.6 2.3E-08 5E-13 130.8 72.8 627 1295-1996 67-789 (1133)
26 KOG0212 Uncharacterized conser 99.6 1.4E-11 3.1E-16 149.0 39.9 419 1624-2141 5-444 (675)
27 KOG1248 Uncharacterized conser 99.5 8E-08 1.7E-12 127.6 74.0 763 1283-2159 74-917 (1176)
28 KOG1248 Uncharacterized conser 99.5 1.8E-07 4E-12 124.3 69.5 776 1654-2558 90-912 (1176)
29 KOG1943 Beta-tubulin folding c 99.5 1.2E-07 2.6E-12 124.4 65.0 461 1843-2423 340-840 (1133)
30 PF01602 Adaptin_N: Adaptin N 99.4 1.2E-09 2.6E-14 149.7 47.6 468 1379-1949 43-521 (526)
31 PF01602 Adaptin_N: Adaptin N 99.4 8.2E-10 1.8E-14 151.3 45.2 460 1852-2418 50-522 (526)
32 PTZ00429 beta-adaptin; Provisi 99.4 1.7E-08 3.7E-13 136.1 51.5 501 1892-2545 39-546 (746)
33 PTZ00429 beta-adaptin; Provisi 99.3 2.4E-07 5.3E-12 125.2 52.2 493 1225-1762 41-542 (746)
34 PRK09687 putative lyase; Provi 99.3 4.9E-10 1.1E-14 136.1 24.1 253 1302-1644 25-278 (280)
35 KOG1991 Nuclear transport rece 99.2 1.6E-06 3.4E-11 113.6 55.1 639 1055-1748 2-780 (1010)
36 PRK13800 putative oxidoreducta 99.2 1E-09 2.2E-14 156.0 27.5 273 1421-1762 622-895 (897)
37 KOG0166 Karyopherin (importin) 99.2 6.6E-09 1.4E-13 130.1 30.5 382 1382-1802 70-484 (514)
38 PRK09687 putative lyase; Provi 99.2 1.6E-09 3.6E-14 131.5 24.0 222 1380-1646 25-248 (280)
39 PRK13800 putative oxidoreducta 99.2 2.4E-09 5.2E-14 152.2 29.2 274 1301-1645 622-896 (897)
40 KOG0166 Karyopherin (importin) 99.1 6E-09 1.3E-13 130.4 26.3 343 1303-1649 69-437 (514)
41 KOG2274 Predicted importin 9 [ 99.0 3.2E-05 7E-10 100.3 50.3 563 1057-1649 4-690 (1005)
42 KOG1992 Nuclear export recepto 99.0 4.5E-05 9.8E-10 97.9 49.2 116 1057-1176 5-135 (960)
43 KOG1992 Nuclear export recepto 98.9 0.00039 8.6E-09 89.7 54.6 683 1511-2315 17-808 (960)
44 KOG1060 Vesicle coat complex A 98.8 1.2E-05 2.6E-10 102.3 38.1 490 1890-2503 40-535 (968)
45 KOG1991 Nuclear transport rece 98.8 0.0024 5.3E-08 84.8 70.5 336 2052-2423 437-803 (1010)
46 PF10508 Proteasom_PSMB: Prote 98.8 1.1E-05 2.4E-10 107.4 40.7 401 1425-1913 43-461 (503)
47 KOG1059 Vesicle coat complex A 98.8 0.00014 3E-09 92.2 46.3 238 1417-1671 141-385 (877)
48 KOG0392 SNF2 family DNA-depend 98.8 8.2E-05 1.8E-09 99.2 46.4 178 2245-2424 749-929 (1549)
49 COG5064 SRP1 Karyopherin (impo 98.8 9.5E-08 2.1E-12 109.1 16.2 308 1338-1647 115-442 (526)
50 PF12348 CLASP_N: CLASP N term 98.8 1.6E-07 3.5E-12 113.0 19.4 200 1775-1999 7-211 (228)
51 PF12348 CLASP_N: CLASP N term 98.8 2.6E-07 5.7E-12 111.1 19.4 183 1347-1532 16-210 (228)
52 PF10508 Proteasom_PSMB: Prote 98.7 7.2E-06 1.6E-10 109.2 31.9 352 2234-2594 43-428 (503)
53 KOG1967 DNA repair/transcripti 98.7 0.0059 1.3E-07 80.4 60.0 212 2287-2501 789-1024(1030)
54 KOG1060 Vesicle coat complex A 98.7 0.00012 2.6E-09 93.5 39.1 479 1433-1985 49-562 (968)
55 KOG1062 Vesicle coat complex A 98.7 0.00018 3.8E-09 92.9 40.8 338 1348-1771 80-419 (866)
56 KOG1822 Uncharacterized conser 98.6 0.014 3.1E-07 82.3 78.5 463 1887-2379 878-1443(2067)
57 KOG0392 SNF2 family DNA-depend 98.6 0.00067 1.4E-08 91.0 45.9 132 2054-2186 797-929 (1549)
58 KOG1062 Vesicle coat complex A 98.6 3.1E-05 6.8E-10 99.4 32.8 385 2075-2494 108-574 (866)
59 KOG1020 Sister chromatid cohes 98.6 0.014 3.1E-07 80.7 60.7 154 1395-1554 793-948 (1692)
60 KOG1020 Sister chromatid cohes 98.6 0.012 2.6E-07 81.4 57.0 260 2287-2555 1095-1415(1692)
61 KOG0891 DNA-dependent protein 98.6 0.02 4.4E-07 85.6 64.0 459 1844-2384 565-1047(2341)
62 KOG1967 DNA repair/transcripti 98.6 0.011 2.4E-07 77.9 63.7 194 2110-2340 813-1022(1030)
63 KOG4224 Armadillo repeat prote 98.6 5.8E-06 1.3E-10 95.8 22.1 341 1459-1803 86-445 (550)
64 COG5064 SRP1 Karyopherin (impo 98.6 1.7E-06 3.7E-11 99.1 17.6 319 1338-1662 72-410 (526)
65 KOG2274 Predicted importin 9 [ 98.6 0.013 2.7E-07 77.3 64.5 268 2054-2359 509-795 (1005)
66 KOG4224 Armadillo repeat prote 98.5 5.8E-06 1.3E-10 95.8 20.0 392 2074-2551 85-499 (550)
67 KOG1240 Protein kinase contain 98.5 8.6E-06 1.9E-10 107.9 23.6 302 1577-1929 423-745 (1431)
68 KOG2021 Nuclear mRNA export fa 98.5 0.014 3.1E-07 75.0 51.2 276 1435-1747 414-748 (980)
69 KOG1240 Protein kinase contain 98.5 1.3E-05 2.7E-10 106.4 24.6 303 1379-1771 423-730 (1431)
70 KOG1993 Nuclear transport rece 98.5 0.016 3.6E-07 75.0 53.7 220 1394-1653 412-649 (978)
71 KOG1820 Microtubule-associated 98.4 6.5E-06 1.4E-10 110.9 20.5 340 1620-2007 99-456 (815)
72 KOG1059 Vesicle coat complex A 98.4 0.0058 1.3E-07 78.2 43.5 257 2107-2380 139-403 (877)
73 COG5240 SEC21 Vesicle coat com 98.4 0.0036 7.9E-08 77.4 39.0 289 1841-2181 261-554 (898)
74 PF12755 Vac14_Fab1_bd: Vacuol 98.4 2.3E-06 4.9E-11 85.4 10.1 93 1395-1526 2-94 (97)
75 PF12460 MMS19_C: RNAPII trans 98.3 0.00087 1.9E-08 87.8 36.5 225 2071-2320 186-413 (415)
76 KOG1061 Vesicle coat complex A 98.3 0.00094 2E-08 87.0 35.3 460 1420-1985 13-480 (734)
77 PF12460 MMS19_C: RNAPII trans 98.3 0.00064 1.4E-08 89.0 34.3 360 1340-1745 2-414 (415)
78 KOG0891 DNA-dependent protein 98.3 0.17 3.6E-06 76.4 60.4 602 1677-2343 112-764 (2341)
79 KOG4535 HEAT and armadillo rep 98.2 0.0026 5.6E-08 77.1 33.8 509 1857-2420 9-603 (728)
80 COG5240 SEC21 Vesicle coat com 98.2 0.018 3.9E-07 71.6 41.0 289 1572-1950 260-553 (898)
81 KOG0413 Uncharacterized conser 98.2 0.068 1.5E-06 70.3 50.2 133 2283-2424 942-1077(1529)
82 KOG0414 Chromosome condensatio 98.2 0.092 2E-06 71.7 59.3 636 1888-2557 315-1075(1251)
83 COG5656 SXM1 Importin, protein 98.2 0.071 1.5E-06 68.9 46.2 338 1357-1699 389-769 (970)
84 KOG1061 Vesicle coat complex A 98.2 0.0028 6E-08 82.8 34.5 435 1252-1763 47-486 (734)
85 KOG1820 Microtubule-associated 98.2 8.1E-05 1.8E-09 100.6 21.8 348 1419-1781 62-458 (815)
86 PF12755 Vac14_Fab1_bd: Vacuol 98.1 1.3E-05 2.8E-10 80.1 9.1 87 1474-1560 2-91 (97)
87 KOG4535 HEAT and armadillo rep 98.1 0.0096 2.1E-07 72.5 33.9 488 1751-2297 10-599 (728)
88 KOG1077 Vesicle coat complex A 98.0 0.032 6.9E-07 71.4 38.8 249 2110-2416 327-583 (938)
89 KOG2062 26S proteasome regulat 98.0 0.13 2.7E-06 66.8 48.8 287 1633-1982 393-682 (929)
90 KOG2259 Uncharacterized conser 98.0 0.0016 3.4E-08 82.3 26.2 244 1738-2016 199-459 (823)
91 KOG1077 Vesicle coat complex A 98.0 0.045 9.7E-07 70.1 38.6 351 1347-1742 83-450 (938)
92 KOG2259 Uncharacterized conser 97.9 0.00036 7.8E-09 87.8 19.7 227 1701-1949 203-472 (823)
93 KOG0414 Chromosome condensatio 97.9 0.35 7.7E-06 66.4 61.4 182 2227-2420 917-1103(1251)
94 PF05804 KAP: Kinesin-associat 97.9 0.017 3.6E-07 78.3 34.8 370 1382-1766 254-649 (708)
95 KOG2956 CLIP-associating prote 97.9 0.00076 1.6E-08 82.5 20.0 198 1335-1536 284-485 (516)
96 KOG2062 26S proteasome regulat 97.8 0.28 6E-06 63.8 41.8 163 2236-2416 526-690 (929)
97 TIGR02270 conserved hypothetic 97.8 0.0032 7E-08 80.6 25.4 239 1379-1685 55-294 (410)
98 TIGR02270 conserved hypothetic 97.8 0.0024 5.1E-08 81.8 24.2 242 1338-1648 55-296 (410)
99 COG1413 FOG: HEAT repeat [Ener 97.8 0.002 4.3E-08 82.7 24.1 235 1351-1648 56-304 (335)
100 KOG2032 Uncharacterized conser 97.8 0.018 3.8E-07 71.5 29.8 141 1844-1984 258-406 (533)
101 COG1413 FOG: HEAT repeat [Ener 97.7 0.0062 1.3E-07 78.1 26.3 184 1420-1646 43-240 (335)
102 KOG1078 Vesicle coat complex C 97.7 0.16 3.4E-06 66.7 37.1 314 1382-1729 68-387 (865)
103 COG5096 Vesicle coat complex, 97.7 0.46 1E-05 64.3 42.8 166 1467-1649 28-196 (757)
104 KOG1058 Vesicle coat complex C 97.6 0.096 2.1E-06 67.9 33.9 93 1855-1952 370-463 (948)
105 KOG2032 Uncharacterized conser 97.6 0.0088 1.9E-07 74.1 24.0 232 1296-1528 254-531 (533)
106 PF13513 HEAT_EZ: HEAT-like re 97.6 6.8E-05 1.5E-09 67.2 4.4 55 1472-1526 1-55 (55)
107 COG5096 Vesicle coat complex, 97.6 0.82 1.8E-05 62.0 44.3 127 1854-1994 29-156 (757)
108 KOG1078 Vesicle coat complex C 97.5 0.18 3.9E-06 66.1 34.4 298 1288-1647 233-531 (865)
109 PF05804 KAP: Kinesin-associat 97.5 0.39 8.5E-06 65.5 39.2 160 1474-1637 265-430 (708)
110 KOG2956 CLIP-associating prote 97.5 0.0048 1E-07 75.7 18.6 200 2233-2434 290-491 (516)
111 KOG4413 26S proteasome regulat 97.4 0.16 3.5E-06 59.4 29.0 252 1904-2183 62-334 (524)
112 PF12717 Cnd1: non-SMC mitotic 97.4 0.0055 1.2E-07 70.1 17.1 110 2242-2360 1-112 (178)
113 KOG2022 Nuclear transport rece 97.3 1.3 2.9E-05 59.3 58.8 265 1436-1747 440-756 (982)
114 KOG1058 Vesicle coat complex C 97.3 0.41 9E-06 62.4 33.7 426 1223-1728 27-466 (948)
115 KOG0946 ER-Golgi vesicle-tethe 97.3 1.3 2.9E-05 58.3 41.3 360 1335-1721 20-433 (970)
116 KOG4653 Uncharacterized conser 97.2 0.02 4.4E-07 75.0 21.8 220 1698-1950 729-962 (982)
117 KOG0168 Putative ubiquitin fus 97.2 0.18 4E-06 66.3 29.5 196 1336-1531 166-367 (1051)
118 PF05004 IFRD: Interferon-rela 97.2 0.022 4.9E-07 70.8 20.6 190 2231-2421 45-258 (309)
119 KOG4653 Uncharacterized conser 97.1 0.032 7E-07 73.3 22.1 224 1928-2182 732-964 (982)
120 KOG0168 Putative ubiquitin fus 97.1 0.11 2.5E-06 68.1 26.7 210 1298-1509 209-436 (1051)
121 PF10274 ParcG: Parkin co-regu 97.1 0.0022 4.7E-08 71.1 9.8 92 2227-2319 36-130 (183)
122 PF05004 IFRD: Interferon-rela 97.1 0.025 5.4E-07 70.3 20.2 191 1460-1651 45-260 (309)
123 cd00020 ARM Armadillo/beta-cat 97.1 0.003 6.4E-08 67.3 10.5 108 1420-1527 7-119 (120)
124 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00047 1E-08 61.8 3.6 55 1393-1447 1-55 (55)
125 PF08623 TIP120: TATA-binding 97.0 0.0016 3.5E-08 71.4 8.0 118 2478-2601 33-164 (169)
126 KOG1993 Nuclear transport rece 97.0 2.3 5.1E-05 56.3 59.8 305 1855-2164 408-751 (978)
127 KOG1822 Uncharacterized conser 97.0 4.2 9.2E-05 59.1 77.1 191 1338-1530 52-250 (2067)
128 PF12717 Cnd1: non-SMC mitotic 97.0 0.024 5.3E-07 64.9 17.6 108 2326-2437 1-109 (178)
129 KOG1293 Proteins containing ar 97.0 2.4 5.3E-05 55.3 35.9 425 1393-1878 67-538 (678)
130 PF13646 HEAT_2: HEAT repeats; 96.9 0.0031 6.7E-08 63.0 8.2 86 1422-1524 1-88 (88)
131 KOG0567 HEAT repeat-containing 96.8 0.036 7.8E-07 63.8 16.6 201 1498-1732 66-287 (289)
132 KOG4524 Uncharacterized conser 96.8 3.9 8.4E-05 55.8 37.8 89 1846-1934 805-900 (1014)
133 KOG0567 HEAT repeat-containing 96.8 0.12 2.6E-06 59.7 20.6 237 1888-2184 39-282 (289)
134 PF05918 API5: Apoptosis inhib 96.8 0.33 7.3E-06 63.7 27.3 292 2240-2549 33-349 (556)
135 KOG4413 26S proteasome regulat 96.8 0.62 1.3E-05 54.8 26.2 211 1757-1992 63-284 (524)
136 PF12719 Cnd3: Nuclear condens 96.7 0.21 4.6E-06 62.5 24.5 127 2294-2420 5-143 (298)
137 PF13646 HEAT_2: HEAT repeats; 96.7 0.008 1.7E-07 60.0 9.4 87 1578-1683 1-88 (88)
138 PF04826 Arm_2: Armadillo-like 96.6 0.076 1.7E-06 63.7 18.3 146 1379-1528 13-163 (254)
139 COG5116 RPN2 26S proteasome re 96.6 0.07 1.5E-06 66.4 17.8 226 1299-1550 445-675 (926)
140 cd00020 ARM Armadillo/beta-cat 96.5 0.011 2.3E-07 62.9 9.7 107 1886-1993 8-119 (120)
141 KOG1525 Sister chromatid cohes 96.4 9.8 0.00021 55.3 52.2 180 1453-1636 254-441 (1266)
142 KOG2933 Uncharacterized conser 96.4 0.033 7.2E-07 65.5 13.1 180 1458-1642 88-271 (334)
143 KOG2025 Chromosome condensatio 96.4 0.27 5.9E-06 63.6 21.4 205 1295-1525 80-291 (892)
144 KOG2025 Chromosome condensatio 96.3 6.2 0.00013 51.9 44.5 212 1415-1651 80-298 (892)
145 PF08506 Cse1: Cse1; InterPro 96.3 0.19 4.2E-06 63.9 20.3 130 1349-1481 222-369 (370)
146 PF14500 MMS19_N: Dos2-interac 96.2 0.53 1.1E-05 57.1 22.2 241 2116-2400 3-259 (262)
147 KOG1525 Sister chromatid cohes 96.1 14 0.00031 53.8 51.8 179 2107-2289 254-441 (1266)
148 PF14500 MMS19_N: Dos2-interac 96.0 0.55 1.2E-05 56.9 21.4 200 1742-1972 4-257 (262)
149 KOG1293 Proteins containing ar 96.0 2.2 4.8E-05 55.7 27.1 139 2240-2379 388-534 (678)
150 PF05918 API5: Apoptosis inhib 95.9 2.3 5E-05 56.2 27.2 273 1672-1974 36-319 (556)
151 PF13001 Ecm29: Proteasome sta 95.9 3.8 8.3E-05 55.1 30.4 97 1611-1707 15-113 (501)
152 PF04826 Arm_2: Armadillo-like 95.8 0.27 5.9E-06 59.1 17.3 193 1337-1533 12-210 (254)
153 PF02985 HEAT: HEAT repeat; I 95.8 0.013 2.7E-07 45.4 4.0 30 1500-1529 1-30 (31)
154 COG5218 YCG1 Chromosome conden 95.6 11 0.00023 48.6 44.6 175 1573-1763 88-263 (885)
155 KOG1243 Protein kinase [Genera 95.6 0.13 2.8E-06 67.3 14.2 188 1573-1767 327-516 (690)
156 PF12719 Cnd3: Nuclear condens 95.5 0.69 1.5E-05 57.9 20.1 114 2391-2505 26-147 (298)
157 PF08506 Cse1: Cse1; InterPro 95.5 0.37 8E-06 61.4 17.6 128 1857-1989 224-370 (370)
158 PF13001 Ecm29: Proteasome sta 95.4 10 0.00023 51.0 31.9 422 1490-1949 14-485 (501)
159 COG5218 YCG1 Chromosome conden 95.4 13 0.00027 47.9 44.6 253 1877-2146 41-302 (885)
160 PF03378 CAS_CSE1: CAS/CSE pro 95.4 6.7 0.00015 51.4 28.8 115 1862-1976 218-350 (435)
161 COG5116 RPN2 26S proteasome re 95.3 0.4 8.6E-06 60.2 16.3 116 1853-1980 561-677 (926)
162 PF13251 DUF4042: Domain of un 95.3 0.19 4.2E-06 56.7 12.7 136 1859-1994 1-174 (182)
163 KOG1243 Protein kinase [Genera 95.3 0.17 3.7E-06 66.3 13.7 243 1672-1950 268-513 (690)
164 PLN03076 ARF guanine nucleotid 95.2 6.3 0.00014 59.6 31.0 310 1890-2200 1142-1507(1780)
165 PF10274 ParcG: Parkin co-regu 95.2 0.23 5.1E-06 55.4 12.7 117 1884-2000 37-170 (183)
166 PF13251 DUF4042: Domain of un 95.2 0.18 3.9E-06 56.9 11.9 126 1505-1650 46-176 (182)
167 PF03378 CAS_CSE1: CAS/CSE pro 95.2 4.7 0.0001 52.8 26.5 224 2066-2301 18-272 (435)
168 cd00256 VATPase_H VATPase_H, r 95.1 2.7 5.9E-05 54.1 23.5 68 1885-1952 353-425 (429)
169 PLN03076 ARF guanine nucleotid 95.0 5.4 0.00012 60.3 29.2 297 2289-2586 1109-1489(1780)
170 KOG2160 Armadillo/beta-catenin 94.9 0.49 1.1E-05 57.8 15.3 176 2284-2459 95-283 (342)
171 PF11864 DUF3384: Domain of un 94.8 22 0.00047 47.7 34.2 290 1352-1652 4-335 (464)
172 PF12231 Rif1_N: Rap1-interact 94.8 15 0.00032 47.6 29.7 276 1352-1653 7-308 (372)
173 PF01347 Vitellogenin_N: Lipop 94.8 1.1 2.3E-05 63.0 21.1 168 1379-1562 396-586 (618)
174 PF02985 HEAT: HEAT repeat; I 94.7 0.05 1.1E-06 42.1 4.3 30 1620-1649 1-30 (31)
175 KOG2022 Nuclear transport rece 94.6 26 0.00057 47.8 58.1 276 2224-2502 544-868 (982)
176 KOG2021 Nuclear mRNA export fa 94.6 23 0.00051 47.2 60.9 343 1589-1974 206-585 (980)
177 PF12054 DUF3535: Domain of un 94.6 1.6 3.4E-05 57.3 20.3 77 1434-1510 101-179 (441)
178 KOG2933 Uncharacterized conser 94.5 0.55 1.2E-05 55.8 13.9 139 1386-1531 96-237 (334)
179 KOG1949 Uncharacterized conser 94.3 3.7 8.1E-05 53.5 21.4 144 1847-1993 177-330 (1005)
180 KOG1517 Guanine nucleotide bin 94.3 0.75 1.6E-05 62.2 15.8 218 2328-2547 485-734 (1387)
181 PF12231 Rif1_N: Rap1-interact 94.1 26 0.00056 45.4 32.8 242 1613-1873 33-303 (372)
182 PF11865 DUF3385: Domain of un 94.1 0.51 1.1E-05 52.7 12.1 108 2312-2420 9-157 (160)
183 PF08167 RIX1: rRNA processing 94.0 1 2.2E-05 50.8 14.6 76 2108-2183 21-98 (165)
184 KOG1949 Uncharacterized conser 93.9 1.3 2.8E-05 57.4 16.2 149 1576-1725 174-331 (1005)
185 KOG1517 Guanine nucleotide bin 93.5 2.5 5.5E-05 57.5 18.5 152 1845-1996 513-673 (1387)
186 PF12054 DUF3535: Domain of un 93.5 1.6 3.5E-05 57.2 17.1 77 1900-1976 102-179 (441)
187 COG5234 CIN1 Beta-tubulin fold 93.1 39 0.00086 44.7 27.1 183 1591-1803 211-415 (993)
188 smart00638 LPD_N Lipoprotein N 93.1 5.9 0.00013 55.0 22.9 168 1379-1562 358-542 (574)
189 KOG1851 Uncharacterized conser 93.1 66 0.0014 47.0 31.6 151 1378-1530 1526-1680(1710)
190 cd00256 VATPase_H VATPase_H, r 93.0 22 0.00048 46.1 25.7 295 1462-1765 105-424 (429)
191 KOG0946 ER-Golgi vesicle-tethe 93.0 45 0.00098 45.0 35.0 190 1753-1954 39-243 (970)
192 COG5095 TAF6 Transcription ini 92.7 1.2 2.5E-05 52.0 12.2 111 2247-2359 254-382 (450)
193 PF11865 DUF3385: Domain of un 92.6 0.96 2.1E-05 50.6 11.4 146 1497-1649 8-158 (160)
194 cd08050 TAF6 TATA Binding Prot 92.6 1.3 2.8E-05 56.2 14.0 88 1596-1685 237-338 (343)
195 KOG0413 Uncharacterized conser 92.6 55 0.0012 44.9 68.1 139 2053-2196 948-1088(1529)
196 KOG2081 Nuclear transport regu 92.3 47 0.001 43.5 41.1 148 1843-1997 290-460 (559)
197 PF04118 Dopey_N: Dopey, N-ter 92.3 20 0.00043 44.6 23.1 219 1337-1562 10-251 (307)
198 PF12530 DUF3730: Protein of u 92.1 26 0.00057 42.1 23.5 204 2275-2491 4-222 (234)
199 PF01347 Vitellogenin_N: Lipop 91.9 3.6 7.7E-05 57.8 18.6 207 2351-2587 364-587 (618)
200 KOG1851 Uncharacterized conser 91.7 94 0.002 45.6 34.8 149 1770-1949 1521-1675(1710)
201 KOG2549 Transcription initiati 91.5 4.9 0.00011 51.8 16.6 112 1864-1975 267-393 (576)
202 KOG2137 Protein kinase [Signal 91.4 5 0.00011 53.5 17.3 168 1575-1746 348-517 (700)
203 PF08167 RIX1: rRNA processing 91.4 2.5 5.5E-05 47.6 13.1 129 1616-1746 22-164 (165)
204 PF12074 DUF3554: Domain of un 91.3 9.5 0.00021 48.9 20.0 97 1883-1979 20-121 (339)
205 COG5095 TAF6 Transcription ini 90.9 5.8 0.00013 46.5 15.1 149 1335-1487 195-359 (450)
206 KOG2122 Beta-catenin-binding p 90.6 34 0.00073 49.1 23.9 73 2515-2588 529-603 (2195)
207 KOG2137 Protein kinase [Signal 90.5 12 0.00026 50.1 19.4 166 1338-1508 350-517 (700)
208 COG5656 SXM1 Importin, protein 90.2 84 0.0018 42.4 63.8 292 2075-2397 461-776 (970)
209 smart00638 LPD_N Lipoprotein N 90.0 25 0.00053 48.9 23.7 129 2285-2426 410-548 (574)
210 PF08623 TIP120: TATA-binding 89.5 1.6 3.5E-05 48.5 9.0 116 1414-1530 3-149 (169)
211 PF05536 Neurochondrin: Neuroc 89.5 99 0.0021 42.2 37.1 190 1393-1653 71-266 (543)
212 cd08050 TAF6 TATA Binding Prot 89.4 5 0.00011 51.0 14.8 115 2225-2340 206-338 (343)
213 KOG1837 Uncharacterized conser 89.3 1.4E+02 0.003 44.1 28.8 77 2514-2591 1539-1615(1621)
214 KOG2549 Transcription initiati 89.1 13 0.00029 48.0 17.6 130 2247-2377 265-421 (576)
215 KOG1048 Neural adherens juncti 89.0 40 0.00086 45.9 22.6 110 2074-2183 233-350 (717)
216 KOG1048 Neural adherens juncti 89.0 27 0.00059 47.4 21.1 149 1379-1528 519-684 (717)
217 KOG2081 Nuclear transport regu 89.0 90 0.002 41.1 40.8 264 1620-1953 200-496 (559)
218 PF11864 DUF3384: Domain of un 88.8 1E+02 0.0022 41.4 38.5 264 2072-2376 174-464 (464)
219 PF10363 DUF2435: Protein of u 88.6 2.2 4.7E-05 42.7 8.4 81 2113-2194 4-84 (92)
220 KOG2160 Armadillo/beta-catenin 88.6 6.3 0.00014 48.6 13.9 112 2231-2342 126-240 (342)
221 KOG0803 Predicted E3 ubiquitin 88.4 14 0.0003 54.0 19.2 108 1883-1991 39-150 (1312)
222 PF08064 UME: UME (NUC010) dom 87.9 4.5 9.7E-05 41.9 10.6 86 1378-1465 11-99 (107)
223 PF04118 Dopey_N: Dopey, N-ter 87.8 83 0.0018 39.3 23.9 197 1657-1873 54-254 (307)
224 PF10363 DUF2435: Protein of u 87.7 4.4 9.4E-05 40.6 9.9 84 2350-2435 4-87 (92)
225 KOG1837 Uncharacterized conser 87.2 1.9E+02 0.0041 42.8 33.7 66 2110-2175 1539-1604(1621)
226 PF10521 DUF2454: Protein of u 87.0 10 0.00022 47.1 15.1 151 2251-2403 98-277 (282)
227 KOG1222 Kinesin associated pro 86.6 1E+02 0.0023 39.1 29.3 114 1398-1511 282-398 (791)
228 COG5657 CSE1 CAS/CSE protein i 86.4 1.6E+02 0.0035 41.0 39.0 107 1062-1176 9-132 (947)
229 PF12726 SEN1_N: SEN1 N termin 85.7 1.9E+02 0.0041 41.4 30.1 115 2468-2586 437-553 (727)
230 PF01603 B56: Protein phosphat 85.7 43 0.00092 44.0 20.5 252 1188-1449 101-370 (409)
231 PF01603 B56: Protein phosphat 85.6 19 0.00042 47.1 17.3 109 2232-2345 258-373 (409)
232 KOG4524 Uncharacterized conser 85.3 1.8E+02 0.004 40.8 47.5 276 2053-2345 568-879 (1014)
233 KOG3961 Uncharacterized conser 85.3 1.8 3.9E-05 48.4 6.3 90 2227-2318 112-204 (262)
234 PF10521 DUF2454: Protein of u 84.4 18 0.00038 45.0 15.4 142 1609-1750 109-278 (282)
235 KOG4199 Uncharacterized conser 84.3 1.1E+02 0.0024 37.4 26.5 148 2394-2582 286-440 (461)
236 KOG2149 Uncharacterized conser 83.5 11 0.00024 47.2 12.6 114 1888-2001 61-177 (393)
237 KOG2213 Apoptosis inhibitor 5/ 83.3 1.3E+02 0.0029 37.6 26.3 272 2115-2421 28-315 (460)
238 smart00802 UME Domain in UVSB 83.3 11 0.00023 39.0 10.5 85 1378-1464 11-98 (107)
239 PF08064 UME: UME (NUC010) dom 83.0 18 0.00038 37.6 12.1 77 1896-1974 26-105 (107)
240 smart00802 UME Domain in UVSB 82.9 5.6 0.00012 41.0 8.3 91 2307-2397 5-102 (107)
241 KOG2213 Apoptosis inhibitor 5/ 82.6 1.4E+02 0.0031 37.4 20.8 210 1736-1974 60-292 (460)
242 KOG4500 Rho/Rac GTPase guanine 82.2 1.5E+02 0.0033 37.5 28.4 153 2430-2586 316-475 (604)
243 PF12530 DUF3730: Protein of u 82.2 1.2E+02 0.0027 36.4 21.1 137 2318-2457 5-150 (234)
244 PF14225 MOR2-PAG1_C: Cell mor 82.0 1.3E+02 0.0029 36.7 21.0 169 1573-1750 61-241 (262)
245 PF14664 RICTOR_N: Rapamycin-i 81.9 94 0.002 40.1 20.7 182 2404-2590 81-273 (371)
246 KOG2149 Uncharacterized conser 81.5 23 0.0005 44.5 14.3 124 1848-1972 62-189 (393)
247 KOG2973 Uncharacterized conser 80.7 85 0.0018 38.1 17.7 101 1503-1605 7-111 (353)
248 KOG2759 Vacuolar H+-ATPase V1 80.7 1.3E+02 0.0027 38.4 19.9 69 2472-2545 366-438 (442)
249 KOG1848 Uncharacterized conser 80.6 60 0.0013 46.7 18.9 217 1310-1528 852-1132(1610)
250 PF00514 Arm: Armadillo/beta-c 77.7 3.5 7.6E-05 34.3 4.1 30 1498-1527 11-40 (41)
251 PF11229 DUF3028: Protein of u 77.7 2.3E+02 0.0051 37.0 22.6 256 2053-2343 17-307 (589)
252 KOG0803 Predicted E3 ubiquitin 77.7 1.7E+02 0.0037 43.4 22.9 111 2072-2182 39-153 (1312)
253 PF08569 Mo25: Mo25-like; Int 77.0 2.2E+02 0.0047 36.2 22.9 109 1743-1875 170-285 (335)
254 KOG4199 Uncharacterized conser 75.9 2E+02 0.0044 35.3 21.5 156 1339-1529 285-445 (461)
255 PF08161 NUC173: NUC173 domain 75.4 18 0.00039 42.0 10.4 168 1592-1764 16-197 (198)
256 PF05536 Neurochondrin: Neuroc 74.7 3.3E+02 0.0072 37.2 38.0 186 2088-2305 71-265 (543)
257 PF03224 V-ATPase_H_N: V-ATPas 73.5 93 0.002 39.4 17.3 169 1301-1472 106-296 (312)
258 PF11698 V-ATPase_H_C: V-ATPas 73.3 12 0.00027 39.0 7.4 57 1936-1994 57-115 (119)
259 KOG1877 Putative transmembrane 73.0 70 0.0015 44.3 16.2 173 1841-2015 14-205 (819)
260 cd03568 VHS_STAM VHS domain fa 72.1 56 0.0012 36.0 12.7 94 2107-2200 32-128 (144)
261 PF14225 MOR2-PAG1_C: Cell mor 70.9 2.6E+02 0.0056 34.3 21.7 184 2108-2305 60-258 (262)
262 cd03568 VHS_STAM VHS domain fa 70.2 41 0.00089 36.9 11.1 74 1378-1452 37-113 (144)
263 KOG2973 Uncharacterized conser 69.4 2.8E+02 0.006 34.0 20.1 101 1700-1802 7-109 (353)
264 PF12830 Nipped-B_C: Sister ch 68.6 31 0.00066 40.0 10.4 77 2471-2554 7-83 (187)
265 KOG3961 Uncharacterized conser 68.3 20 0.00044 40.5 8.2 87 1886-1972 115-206 (262)
266 PF08713 DNA_alkylation: DNA a 67.9 89 0.0019 36.9 14.7 146 2390-2557 50-196 (213)
267 PF08767 CRM1_C: CRM1 C termin 67.7 2.3E+02 0.005 35.9 18.7 121 1858-1978 90-227 (319)
268 PF14664 RICTOR_N: Rapamycin-i 67.6 3.7E+02 0.008 34.8 22.8 219 2321-2550 34-274 (371)
269 PF08767 CRM1_C: CRM1 C termin 67.4 3.4E+02 0.0075 34.4 20.9 165 2090-2285 43-228 (319)
270 PF12726 SEN1_N: SEN1 N termin 66.9 5.7E+02 0.012 36.7 35.3 112 2068-2183 435-554 (727)
271 PF08161 NUC173: NUC173 domain 66.7 83 0.0018 36.7 13.3 71 1395-1465 16-86 (198)
272 PF03224 V-ATPase_H_N: V-ATPas 66.7 1.3E+02 0.0027 38.2 16.3 100 1588-1687 69-179 (312)
273 KOG2011 Sister chromatid cohes 65.7 6.2E+02 0.014 36.7 23.2 134 2401-2542 297-432 (1048)
274 PF14868 DUF4487: Domain of un 64.8 5.1E+02 0.011 35.4 24.7 87 1565-1651 468-555 (559)
275 PF08389 Xpo1: Exportin 1-like 64.6 39 0.00084 37.2 10.1 37 1633-1669 2-38 (148)
276 cd03567 VHS_GGA VHS domain fam 64.3 1.1E+02 0.0024 33.3 12.9 74 1378-1452 38-119 (139)
277 COG5098 Chromosome condensatio 64.1 5E+02 0.011 35.1 62.3 141 2230-2379 893-1038(1128)
278 KOG2122 Beta-catenin-binding p 64.0 7.3E+02 0.016 37.0 26.3 209 1555-1767 370-602 (2195)
279 PF08389 Xpo1: Exportin 1-like 63.4 70 0.0015 35.1 11.9 64 1961-2024 78-147 (148)
280 COG5098 Chromosome condensatio 62.7 5.3E+02 0.011 34.9 62.3 127 2284-2419 908-1036(1128)
281 cd03569 VHS_Hrs_Vps27p VHS dom 61.6 94 0.002 34.2 11.8 74 1378-1452 41-117 (142)
282 KOG0890 Protein kinase of the 61.5 8.6E+02 0.019 38.4 24.2 174 2241-2424 933-1117(2382)
283 KOG1848 Uncharacterized conser 61.3 6.6E+02 0.014 37.2 21.9 227 1393-1649 856-1133(1610)
284 cd03572 ENTH_epsin_related ENT 61.0 27 0.00058 36.9 7.1 74 2513-2586 35-119 (122)
285 cd03572 ENTH_epsin_related ENT 60.5 56 0.0012 34.6 9.3 75 2108-2182 34-119 (122)
286 cd07064 AlkD_like_1 A new stru 59.7 2.5E+02 0.0054 33.1 15.9 146 2390-2557 45-191 (208)
287 cd03561 VHS VHS domain family; 58.9 91 0.002 33.8 11.2 74 1378-1452 37-115 (133)
288 PF04388 Hamartin: Hamartin pr 58.7 61 0.0013 45.2 12.2 155 2155-2322 6-161 (668)
289 PF11698 V-ATPase_H_C: V-ATPas 58.3 38 0.00082 35.6 7.5 67 2313-2379 43-116 (119)
290 PF12765 Cohesin_HEAT: HEAT re 58.1 13 0.00028 31.2 3.4 40 1482-1523 3-42 (42)
291 PF00790 VHS: VHS domain; Int 57.7 78 0.0017 34.7 10.6 73 1378-1451 42-120 (140)
292 PF14868 DUF4487: Domain of un 57.0 6.7E+02 0.015 34.2 24.7 90 2097-2186 464-556 (559)
293 PF07571 DUF1546: Protein of u 56.2 39 0.00086 33.9 7.2 57 2284-2340 18-76 (92)
294 KOG1789 Endocytosis protein RM 55.6 3.4E+02 0.0073 38.3 16.9 146 2288-2435 1741-1903(2235)
295 PF08569 Mo25: Mo25-like; Int 55.3 5.5E+02 0.012 32.7 22.7 149 1378-1529 76-239 (335)
296 cd00197 VHS_ENTH_ANTH VHS, ENT 53.8 87 0.0019 33.0 9.8 68 1378-1446 37-112 (115)
297 PF07539 DRIM: Down-regulated 53.2 59 0.0013 35.6 8.5 81 1499-1585 17-97 (141)
298 PF09324 DUF1981: Domain of un 52.9 38 0.00083 33.6 6.4 69 2270-2338 16-84 (86)
299 PF00790 VHS: VHS domain; Int 52.8 1.5E+02 0.0033 32.5 11.8 92 2513-2604 39-137 (140)
300 cd03569 VHS_Hrs_Vps27p VHS dom 52.7 2.2E+02 0.0047 31.3 12.8 80 2107-2186 36-118 (142)
301 smart00288 VHS Domain present 52.3 1.2E+02 0.0025 33.0 10.6 73 1378-1451 37-113 (133)
302 PF14222 MOR2-PAG1_N: Cell mor 52.1 5.8E+02 0.013 35.0 19.4 211 2369-2585 12-248 (552)
303 KOG0889 Histone acetyltransfer 51.9 1.6E+03 0.035 37.2 78.7 1138 1227-2545 18-1343(3550)
304 KOG1877 Putative transmembrane 50.8 1.8E+02 0.0038 40.7 13.9 131 1414-1547 11-150 (819)
305 smart00288 VHS Domain present 50.2 1.2E+02 0.0027 32.8 10.4 89 2226-2317 34-125 (133)
306 KOG1789 Endocytosis protein RM 49.3 1E+03 0.022 34.1 22.3 170 2427-2604 2001-2182(2235)
307 PF00514 Arm: Armadillo/beta-c 49.3 29 0.00063 28.8 4.3 29 1619-1647 12-40 (41)
308 COG5234 CIN1 Beta-tubulin fold 49.3 8.6E+02 0.019 33.2 26.2 221 1298-1529 244-492 (993)
309 KOG2005 26S proteasome regulat 49.2 4.6E+02 0.01 35.4 16.4 321 1341-1689 418-745 (878)
310 cd03565 VHS_Tom1 VHS domain fa 49.1 2.1E+02 0.0045 31.5 11.9 74 1378-1451 38-117 (141)
311 PF12765 Cohesin_HEAT: HEAT re 47.9 30 0.00065 29.1 4.1 24 1420-1443 18-41 (42)
312 PF12333 Ipi1_N: Rix1 complex 46.7 1.2E+02 0.0025 31.3 9.0 58 282-339 5-65 (102)
313 PF14631 FancD2: Fanconi anaem 46.2 1.5E+03 0.032 35.1 33.6 151 2345-2502 431-584 (1426)
314 PF07571 DUF1546: Protein of u 46.1 54 0.0012 33.0 6.3 55 1896-1950 17-76 (92)
315 PF11701 UNC45-central: Myosin 45.6 83 0.0018 35.3 8.5 116 1432-1547 17-138 (157)
316 PF08713 DNA_alkylation: DNA a 44.7 1.8E+02 0.0039 34.3 11.9 69 1421-1492 121-189 (213)
317 smart00185 ARM Armadillo/beta- 44.3 28 0.0006 28.5 3.5 29 1499-1527 12-40 (41)
318 cd03567 VHS_GGA VHS domain fam 43.8 2.2E+02 0.0047 31.2 10.9 79 2107-2185 33-119 (139)
319 PF08146 BP28CT: BP28CT (NUC21 43.6 2.1E+02 0.0045 31.9 11.1 76 2089-2164 36-119 (153)
320 PF11701 UNC45-central: Myosin 42.9 55 0.0012 36.7 6.6 129 1313-1444 18-154 (157)
321 PF11919 DUF3437: Domain of un 42.7 37 0.0008 33.9 4.5 59 1473-1532 4-62 (90)
322 PF12333 Ipi1_N: Rix1 complex 42.3 90 0.0019 32.1 7.4 59 1611-1669 3-65 (102)
323 KOG0889 Histone acetyltransfer 42.3 2.2E+03 0.047 35.9 74.3 1031 1421-2594 985-2115(3550)
324 cd03561 VHS VHS domain family; 42.1 3.6E+02 0.0077 29.3 12.5 77 1922-1998 36-116 (133)
325 KOG3687 Tuberin - Rap/ran-GTPa 36.7 9.7E+02 0.021 33.9 16.8 75 1192-1266 445-523 (1697)
326 KOG1823 DRIM (Down-regulated i 36.2 1.8E+03 0.039 33.3 53.3 185 2141-2361 795-980 (1364)
327 KOG2011 Sister chromatid cohes 35.8 1.7E+03 0.036 32.7 22.2 236 1396-1645 172-432 (1048)
328 KOG2199 Signal transducing ada 34.6 3.2E+02 0.007 34.4 11.3 106 2094-2201 29-137 (462)
329 KOG3723 PH domain protein Melt 32.5 1.2E+03 0.025 31.1 15.8 226 2137-2376 18-264 (851)
330 PF09324 DUF1981: Domain of un 32.4 1.7E+02 0.0038 29.0 7.4 68 2111-2178 16-84 (86)
331 KOG3678 SARM protein (with ste 31.9 1.2E+03 0.027 30.0 21.7 28 1620-1647 424-451 (832)
332 KOG3915 Transcription regulato 31.7 11 0.00024 46.5 -1.1 18 842-859 561-578 (641)
333 PF07539 DRIM: Down-regulated 31.3 2.3E+02 0.0049 31.2 8.7 82 2312-2400 16-97 (141)
334 cd06561 AlkD_like A new struct 30.9 8.8E+02 0.019 28.0 17.7 79 2475-2561 108-186 (197)
335 PF12397 U3snoRNP10: U3 small 30.9 5.5E+02 0.012 27.2 11.6 69 1416-1486 2-73 (121)
336 cd03565 VHS_Tom1 VHS domain fa 30.7 7.2E+02 0.016 27.3 12.5 81 2106-2186 32-119 (141)
337 KOG2199 Signal transducing ada 29.5 5.1E+02 0.011 32.8 11.8 71 1378-1449 45-118 (462)
338 PF04510 DUF577: Family of unk 28.9 9E+02 0.019 27.4 12.6 90 1657-1750 3-97 (174)
339 PF14228 MOR2-PAG1_mid: Cell m 28.7 2.3E+03 0.049 32.1 28.4 120 2430-2558 504-624 (1120)
340 PF12612 TFCD_C: Tubulin foldi 27.3 5E+02 0.011 30.2 11.4 127 1416-1548 3-138 (193)
341 cd06561 AlkD_like A new struct 27.2 1E+03 0.022 27.5 16.7 66 1381-1452 108-173 (197)
342 KOG4500 Rho/Rac GTPase guanine 26.9 1.5E+03 0.032 29.3 34.7 147 2230-2379 316-476 (604)
343 COG5537 IRR1 Cohesin [Cell div 26.3 1.8E+03 0.038 30.0 21.6 63 1852-1914 322-386 (740)
344 PF12783 Sec7_N: Guanine nucle 26.0 7.9E+02 0.017 27.7 12.5 96 1392-1487 35-146 (168)
345 PF11935 DUF3453: Domain of un 25.4 1.3E+03 0.027 28.0 14.9 129 2473-2605 44-214 (239)
346 PF05997 Nop52: Nucleolar prot 24.4 1.2E+03 0.027 27.6 16.4 67 12-79 4-72 (217)
347 PF08146 BP28CT: BP28CT (NUC21 24.1 4E+02 0.0087 29.7 9.3 36 1713-1748 84-119 (153)
348 KOG3036 Protein involved in ce 24.1 1.1E+03 0.025 28.2 12.7 70 1379-1448 125-196 (293)
349 cd07064 AlkD_like_1 A new stru 24.0 1.1E+03 0.023 27.9 13.4 106 1380-1496 82-188 (208)
350 cd00197 VHS_ENTH_ANTH VHS, ENT 23.3 5.9E+02 0.013 26.6 10.1 73 2107-2179 32-112 (115)
351 PF03542 Tuberin: Tuberin; In 22.9 1.7E+03 0.037 28.7 15.5 126 1378-1509 141-286 (356)
352 PF14676 FANCI_S2: FANCI solen 22.8 3.9E+02 0.0086 29.9 8.8 104 208-312 51-156 (158)
353 KOG2759 Vacuolar H+-ATPase V1 22.7 1.8E+03 0.038 28.8 27.9 71 1578-1649 116-187 (442)
354 PF11841 DUF3361: Domain of un 22.6 5.3E+02 0.012 28.9 9.5 62 1857-1918 73-135 (160)
355 smart00185 ARM Armadillo/beta- 22.1 1.1E+02 0.0024 24.8 3.5 29 2517-2545 13-41 (41)
356 PF10350 DUF2428: Putative dea 22.0 1.3E+03 0.028 28.2 14.1 161 1589-1749 60-252 (255)
357 PF12397 U3snoRNP10: U3 small 21.7 3.9E+02 0.0084 28.4 8.4 78 2513-2593 3-81 (121)
358 KOG0929 Guanine nucleotide exc 21.4 3E+03 0.064 31.7 18.9 128 2234-2361 1179-1323(1514)
359 KOG3067 Translin family protei 21.0 1.8E+02 0.0039 32.5 5.5 35 842-876 11-45 (226)
360 PF11919 DUF3437: Domain of un 21.0 1.5E+02 0.0033 29.6 4.6 58 2532-2590 5-62 (90)
361 COG5537 IRR1 Cohesin [Cell div 20.1 2.3E+03 0.049 29.1 19.7 163 2396-2566 280-449 (740)
362 KOG1087 Cytosolic sorting prot 20.1 5E+02 0.011 34.5 10.2 72 1378-1450 38-113 (470)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-55 Score=539.07 Aligned_cols=561 Identities=50% Similarity=0.755 Sum_probs=523.6
Q ss_pred HHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHH
Q 000051 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2612)
Q Consensus 1201 l~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~ 1280 (2612)
++.+...+...+...++.|++..| .|+...||..|++++..++..||.+.+..++|.|++.++... .+.+|+++
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch-----hHHHhhhh
Confidence 334444444444444577887777 999999999999999999999999999999999999998732 78999999
Q ss_pred HHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHH
Q 000051 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2612)
Q Consensus 1281 i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~ 1360 (2612)
+++.|.++.|+...|++...+++.+++.+++|++.||++++.|++++...........+..++..+.+..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999877766555555555555555778999999999
Q ss_pred HHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 000051 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2612)
Q Consensus 1361 ~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa 1440 (2612)
++++++++.|...+....++..+.+.+.++++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHH
Q 000051 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2612)
Q Consensus 1441 ~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~ 1520 (2612)
..+.+.++..++.++++.++|+++..+.+..|++|.++++++|.|++++|+|++.++++++|.+.+.|.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000051 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2612)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l 1600 (2612)
.|+..+++.+.|++++.++|.|++++.||+.++.+|++.++.++|++++++++++.++|.+.+++.+++..+++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHH
Q 000051 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2612)
Q Consensus 1601 ~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~ 1680 (2612)
+++|..+.+++++.||++.++|.+...+.|+.|++|..+++++|.+.+.+|+..+++.+|++.+.+.++....+|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhChhhHHhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHH
Q 000051 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2612)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al 1758 (2612)
.+++++...|.+...+++|.++...... ++.+|++.+.++..++..+|..|.+|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887664 67799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 000051 1759 GAGHVLVEH 1767 (2612)
Q Consensus 1759 ~al~~lv~~ 1767 (2612)
++...++.+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887766544
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=6.4e-46 Score=458.65 Aligned_cols=1013 Identities=17% Similarity=0.199 Sum_probs=738.1
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhc--ccc-ccC
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQT--TFV-NTV 1569 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~--~~~-~~i 1569 (2612)
.++++..++++|.|.+++|++.|++|++.++..+++..+..++..|+..+-...+..|+ ++.+.+.. .+. ...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 46788899999999999999999999999999998888899999999886555555552 34443321 111 223
Q ss_pred ChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1570 DAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~--d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
.+.....+.|.+..++. +....++-.++++++.+....++ -+.++...++..+...+..+...||+.|..++|.++
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~--ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT--LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 44556677777777764 34556888899999888876654 455577778888888888999999999999999999
Q ss_pred hhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhc---cCCChhhHhHHHHHHH
Q 000051 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNC---SHQRASVRDGYLTLFK 1721 (2612)
Q Consensus 1648 ~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~---~~~~~~vR~~~~~~l~ 1721 (2612)
...+.+.+..++..+.+.|.+.......+..+++++.+++..|.. .++.++|.+.+.+ +..++++|+.++++++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 999988999999999999988776666678899999999999976 4578899998888 6678999999999999
Q ss_pred HhhhhhccchhhhHHhHHHHHHhhcCCCC---------------------h-------------hHHHHHHHHHHHHHHH
Q 000051 1722 YLPRSLGVQFQNYLQQVLPAILDGLADEN---------------------E-------------SVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1722 ~L~~~~g~~f~p~l~~iip~ll~~L~d~~---------------------~-------------~VR~~Al~al~~lv~~ 1767 (2612)
.+...++.+..||.+.++..++++++.+. + .||.+|++++..++..
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987210 0 2777777777766543
Q ss_pred hhh---chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHH
Q 000051 1768 YAT---TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2612)
Q Consensus 1768 ~~~---~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~ 1844 (2612)
-.+ .....+-|.+.....+....++...+...-.++.+.+....- ..+.+.-++ .+.......+.+ ....
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~-~~d~d~~e~-~g~~s~~~~L~~-----~~~~ 435 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEV-LADNDAMEQ-GGTPSDLSMLSD-----QVPL 435 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCccc-ccCchhhhc-cCCccchHHHHh-----hhHH
Confidence 211 112234455555555555566666666666666654433211 000000000 000000011111 1123
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhchh---
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGER--- 1919 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~--~~~R~~A~~aL~~lv~~~~~~--- 1919 (2612)
++.++-..+.+.+...|..++..+..++...|+.+.++++.++|.+...+.|.+ ...+..+...+.......++.
T Consensus 436 iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fh 515 (1233)
T KOG1824|consen 436 IVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFH 515 (1233)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcc
Confidence 445554445566666899999999999999999999999999999999999654 466777777776665555554
Q ss_pred -hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh------hhHHHhHhHHHHHHHHHh--cCCcHHHHHHHHHHHH
Q 000051 1920 -VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1920 -~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~D~d~~Vr~~A~~al~ 1990 (2612)
..+.+.|++..+..++.+.+-..+.....+++....+ -...+|..+++....+.+ .|.|.+||+.|+.+++
T Consensus 516 p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 516 PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3567778888888999988888777766666654433 234678888888887766 4889999999999999
Q ss_pred HHHHHhChh---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHH-hCC
Q 000051 1991 TLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGP 2066 (2612)
Q Consensus 1991 ~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~-~g~ 2066 (2612)
.+..++|.. ....++|.+++.|+++.++-. +.+|+.-++.. ..-
T Consensus 596 q~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~--------------------------------AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 596 QIIANFGDFLGNELPRTLPILLERLGNEITRLT--------------------------------AVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHH--------------------------------HHHHHHHHHhcccee
Confidence 998888742 234456666666666554333 33444444431 234
Q ss_pred ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 2067 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 2142 (2612)
Q Consensus 2067 ~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~ 2142 (2612)
++.+.+..+++.+.+.+....+..|.....++..++.+++. ..+..++.++...+.+.+.++-+.|+.++..++..
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999888888999999999999887643 44778888888888888999999999999999988
Q ss_pred cccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH----hhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccc
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV----ASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~----~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2612)
.+..+......+++.++.++..+- +...+..++-.+. .+... .++ +.. +...+.. + +
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~-~l~-y~~-l~s~lt~------------P--V 784 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEP-DLD-YIS-LLSLLTA------------P--V 784 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCC-Ccc-HHH-HHHHHcC------------C--c
Confidence 877777788889999999887653 3333333333322 22111 111 111 1111100 0 0
Q ss_pred cCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHh-cCCCCHhHHHHHHHHH
Q 000051 2219 PGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRII-GDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2219 ~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l-~~~~~~~vk~~al~~L 2296 (2612)
.+- ...| +.......|.|.+.++..++ +.-++.+. -|+.-+ ..+.+..+|..++.+|
T Consensus 785 ~~~----------------~~~~l~kqa~~siA~cvA~Lt~~~~-~~s~s~a~----kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 785 YEQ----------------VTDGLHKQAYYSIAKCVAALTCACP-QKSKSLAT----KLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred ccc----------------cccchhHHHHHHHHHHHHHHHHhcc-ccchhHHH----HHHHHHhCCCCchhHHHHHHhhh
Confidence 000 0001 11223345677777776665 22233333 334333 3445778999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGV 2376 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~v 2376 (2612)
|++++..+.. ..+.+-.+++++++.++++|+.+|+.|||.+.. +++..|+|+++..+.+ ++.-++..+++|+++
T Consensus 844 GElgr~~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkev 917 (1233)
T KOG1824|consen 844 GELGRRKDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEV 917 (1233)
T ss_pred hhhccCCCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHH
Confidence 9999877653 345666789999999999999999999999966 7889999999999975 567789999999999
Q ss_pred HHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhH------------------------------
Q 000051 2377 LKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ------------------------------ 2426 (2612)
Q Consensus 2377 i~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~------------------------------ 2426 (2612)
+........-++.+.||.+|.+.+.+.++++|+.+|+|||+|+.+.|+.-
T Consensus 918 i~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~ 997 (1233)
T KOG1824|consen 918 IVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ 997 (1233)
T ss_pred HHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence 99877665578999999999999999999999999999999998777521
Q ss_pred -------HHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHH------------------hhh
Q 000051 2427 -------LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLK------------------SSL 2481 (2612)
Q Consensus 2427 -------~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~------------------~~~ 2481 (2612)
..+.+.+++..+.+++..+|+-+..+++++....|.-+ .++.+++.+.+. +|.
T Consensus 998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~ 1075 (1233)
T KOG1824|consen 998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHT 1075 (1233)
T ss_pred CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCcccc
Confidence 11222234444567777778777778888888777665 356666666654 455
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHH
Q 000051 2482 KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPA 2561 (2612)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~ 2561 (2612)
.|++..+|+.|..|+..++..|... ..+.+|+..+..++.|+ .|+|.++..++..+|..+|+.|...++.++.+
T Consensus 1076 VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~Ep 1149 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEP 1149 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 6677899999999999999998654 35788999888899887 89999999999999999999999999999999
Q ss_pred HHhhhc------------CCcchhhhhHHHHHHHHhcccccchhhhHhhhhhccC
Q 000051 2562 LAECLK------------DGSTPVRLAAERCAVHAFQLTRGIIYSRSTKIYNRLG 2604 (2612)
Q Consensus 2562 l~~~~~------------~~~~~vk~aae~~~~~~~~~~~~~~~~~~~~~~~~~~ 2604 (2612)
|-+.+. |+....|++|.||+.+++++++-+..-++.+++++.+
T Consensus 1150 Lr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~~np~~~df~sqik 1204 (1233)
T KOG1824|consen 1150 LRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVEKNPQFSDFESQIK 1204 (1233)
T ss_pred HHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhh
Confidence 998753 3556678888899999999988888777888877654
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-45 Score=469.15 Aligned_cols=907 Identities=17% Similarity=0.192 Sum_probs=643.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCCCC
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2612)
..+.+|+++++||||.+|++|+++|++.+... + .......+..+..++++|++|. ++|...+.+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~----~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE----P---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc----c---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46899999999999999999999999887432 1 1223334566777778777754 6899888788
Q ss_pred CCCh-HhHHHhhc-CCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhh
Q 000051 1129 GTDY-SGLFKALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2612)
Q Consensus 1129 ~~~~-~~Ll~~l~-~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~ 1205 (2612)
++.+ ..||..+. ++...||++.|+++|++++. .|+.||++++.|+++.. +.+-..|+.+.+.|..++
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7778 78887554 67889999999999999875 56689999999998742 223478999999999999
Q ss_pred hhhCCCChhHHHHH--HHhhhcCCCcHHHHHHHHHHHHHHHHhhC--cc---hhhhhHHHHHHHhccC--CCChHHhhhH
Q 000051 1206 DVLRTKDLPVIMTF--LISRALADTNADVRGRMLNAGIMIIDKHG--RD---NVSLLFPIFENYLNKK--ASDEEKYDLV 1276 (2612)
Q Consensus 1206 ~~~~~~~~~~i~~~--li~~~l~d~~~~VR~~~~~a~~~~i~~~g--~~---~~~~Llp~~~~~l~~~--~~~~~~~d~v 1276 (2612)
..++....+.+-.+ +..++++|++..||..+++|...++.... +. ....++|.+...+... ..+++..+.+
T Consensus 147 ~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~ 226 (1075)
T KOG2171|consen 147 ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSA 226 (1075)
T ss_pred hhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHH
Confidence 99998776643333 23699999988899999999999999885 22 2345556444433321 1222222333
Q ss_pred HhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcch-------hHHHHHHHHHHhh
Q 000051 1277 REGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-------APTLVSRLLDQLM 1347 (2612)
Q Consensus 1277 r~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~-------~~~li~~ll~~L~ 1347 (2612)
-+..+.++....+.+ .|.+..|+...+...++. .+.+|..+.+++..++...... ...+++.++..+.
T Consensus 227 l~~l~El~e~~pk~l---~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 227 LEALIELLESEPKLL---RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHhhchHHH---HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 333333333322222 456788888888877766 5789999999987777653211 1345555555544
Q ss_pred cC---C-----------C-hHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1348 KS---D-----------K-YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1348 ~~---~-----------~-~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
.. + + ....+.|.++|+.++.++|++.+.+ .+++.+..++++. +|..|++|+++++.+++|+++
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p-~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~ 381 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP-PLFEALEAMLQST-EWKERHAALLALSVIAEGCSD 381 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHH
Confidence 21 1 1 2356789999999999999988854 7999999999998 799999999999999999999
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHh
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~ 1487 (2612)
.+.+.+.+++|.++.++.|++|.||.+|+.+++++...+.++ ....++|.|+..+++. +.++...|+.++..+.+
T Consensus 382 ~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 382 VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776 3466777888888764 56888888888777765
Q ss_pred -hCchhhhhhhchhHH-HHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hhHhhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000051 1488 -CAPQQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2612)
Q Consensus 1488 -~~p~~l~~~L~~ivp-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2612)
+..+.+.+||+.++. .+..+++...+.||+.++.+|+.++...++ ||++.++|.|...+...+++
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~---------- 531 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK---------- 531 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch----------
Confidence 556689999999999 555556677899999999999999988775 57788888888887655421
Q ss_pred ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHH---hcCCCHHHHHHH
Q 000051 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSVA 1639 (2612)
Q Consensus 1563 ~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~---L~d~~~~VR~~A 1639 (2612)
.....|.+..++++.++..++. +.|.|+..+++..+... ..+.+...|...
T Consensus 532 -------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 532 -------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred -------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHH
Confidence 1125677778888888887765 67899999999998888 445567789999
Q ss_pred HHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHH
Q 000051 1640 ARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1640 ~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
..+++.+++.+|++ +++.++|.++.+.+.+.....--. ....+....-|.+.. ++=..=.-.....--.-|+.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A 662 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETA 662 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccccchhh-ccCCceeeeeeehhHHHHHHH
Confidence 99999999999987 567788888877654432200000 000000000000000 000000000112233457889
Q ss_pred HHHHHHhhhhhccchhhhHHhHHHH-HHhhcCCCChhHHHHHHHHHHHHHHHhhh------c----hhhhhHHHHhhccC
Q 000051 1717 LTLFKYLPRSLGVQFQNYLQQVLPA-ILDGLADENESVRDAALGAGHVLVEHYAT------T----SLPLLLPAVEDGIF 1785 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~~iip~-ll~~L~d~~~~VR~~Al~al~~lv~~~~~------~----~i~~llp~L~~~l~ 1785 (2612)
+.+++.++...+..|.||+.++++. +....-+.++.||.+|..++..++...-. . .+..+.|.+...+.
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~ 742 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALE 742 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999994 34444467889999999999988765322 1 33456777777776
Q ss_pred CCchH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCccc-hHHHHHHHHHHh-------ChhhHHHHHHHHHHHccCC
Q 000051 1786 NDNWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS-TEAHGRAIIEVL-------GRDKRNEVLAALYMVRSDV 1856 (2612)
Q Consensus 1786 d~~w~-vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~-~~~~~~~l~~~L-------g~~~~~~vl~~L~~~~~D~ 1856 (2612)
++... +-.+.++.++..+..++...- .++.... .......+.... ..+.-.+.-..-.....+.
T Consensus 743 ~E~e~~vl~~vl~~f~~~i~~~G~~~L-------~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~ 815 (1075)
T KOG2171|consen 743 EEPETEVLSEILESFAECIEVMGDNCL-------NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQ 815 (1075)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCcccC-------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhh
Confidence 66555 555566667766665542210 0000000 000000000000 0000000000000011244
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcC
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLK 1933 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~ 1933 (2612)
+...-..+.+++..++...++.|.+.+..+.|.+++.+.+.....|.+|..++++++..+|+. +.+.++|.+...+.
T Consensus 816 d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~ 895 (1075)
T KOG2171|consen 816 DAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQ 895 (1075)
T ss_pred hHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcC
Confidence 455667788889999999999999999999999999999877777999999999999999876 57889999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhCh-hhhhhhHH
Q 000051 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI------LEVRESAGLAFSTLFKSAGM-QAIDEIVP 2006 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d------~~Vr~~A~~al~~l~~~~g~-~~~~~ilp 2006 (2612)
|++|+||+++.+++|.+. ..++..+.+.+...+|.+...+..++ ...+++|+.|+++++.+... ..+++++|
T Consensus 896 d~~pEVRqaAsYGiGvla-q~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~ 974 (1075)
T KOG2171|consen 896 DSDPEVRQAAAYGMGVLA-QFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLP 974 (1075)
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHH
Confidence 999999999999999864 45666677778888888888776543 34678899999999776432 34899999
Q ss_pred HHHHhccCC---CcchHHHHHHHHHhhhc
Q 000051 2007 TLLHALEDD---QTSDTALDGLKQILSVR 2032 (2612)
Q Consensus 2007 ~Ll~~L~~~---~~~~~al~~L~~il~~~ 2032 (2612)
.|+.+|.-. +.+....+.|..++...
T Consensus 975 ~~l~~LPl~~D~eEa~~iy~~l~~L~e~n 1003 (1075)
T KOG2171|consen 975 AWLSWLPLKEDKEEAVPIYTFLSDLYESN 1003 (1075)
T ss_pred HHHHhCCCccchhhhhhHHHHHHHHHHhC
Confidence 999998433 33345556666666443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-40 Score=425.80 Aligned_cols=866 Identities=18% Similarity=0.222 Sum_probs=617.1
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h--
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L-- 1208 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~-- 1208 (2612)
+..|+..|.++|..+|+.|.+++......-+ ..+.+ ..+... ..+-++|+.++.-++.++.. +
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l~~L-~~i~~~------------~~~p~~Rq~aaVl~Rkl~~~~w~~ 71 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LLPAL-AHILAT------------SADPQVRQLAAVLLRKLLTKHWSR 71 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hHHHH-HHHHhc------------CCChHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999976654444 22222 222211 12337999999999988753 2
Q ss_pred -CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHH
Q 000051 1209 -RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2612)
Q Consensus 1209 -~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~L 1287 (2612)
..+....+..-++......+.+.||.+..+++.++.+....+.|+++++.+.++.+.++ ...||.++..+..+
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSSL 145 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHhh
Confidence 22333345555554556788999999999999999999887899999999999988743 35789999999888
Q ss_pred hhhhccC-CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc------hhHHHHHHHHHHhhcC---CChHHHHH
Q 000051 1288 AKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD------EAPTLVSRLLDQLMKS---DKYGERRG 1357 (2612)
Q Consensus 1288 a~~l~~~-~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~------~~~~li~~ll~~L~~~---~~~~~R~~ 1357 (2612)
...+... .+++..+...+.+++.|++..||..++++++.++..... ....++|.+++.+... +|...-..
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~ 225 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS 225 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence 8777654 468899999999999999988999999999998877631 2356778777776543 23333455
Q ss_pred HHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHcCC
Q 000051 1358 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRN-SAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSD 1431 (2612)
Q Consensus 1358 Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~~~-~~~~R~~Al~al~~L~~~~~---~~~~~~v~~ilp~ll~~l~D 1431 (2612)
+..+|..++...+. .+.+ ..++.+..+...++. +...|+.|+..+..+++..+ +...+|...++|.++..+.|
T Consensus 226 ~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte 304 (1075)
T KOG2171|consen 226 ALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE 304 (1075)
T ss_pred HHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC
Confidence 55566666654332 2211 156666666666543 78899999999999999855 55667888999999998864
Q ss_pred CCH----------------HHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1432 QVV----------------AVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1432 ~~~----------------~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
... .-...|..+++.++..+++..+ ..+++.+-..+.+.+|+.|++++.+|+.+++++++++.
T Consensus 305 ~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 305 EEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred cccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 321 2445678899999999987654 67777777888999999999999999999999999999
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
..+++|++.+++.++|+||+||.+|+.|+|++...+. |+++. .+.
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~~ 429 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KHH 429 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HHH
Confidence 9999999999999999999999999999999998775 32221 011
Q ss_pred hhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1575 ALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~-~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
..+.|.+...+++. +.++..+|+.++.++.... ..+.+.||++.+|. .+..+++++.+.||+.+..+||+++...++
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22333344444432 4688888888888888754 33678999999999 677777788999999999999999999987
Q ss_pred C---CchhhHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhChhhHHh----HhHHHHHh---ccCCChhhHhHHHHH
Q 000051 1653 E---NFPDLVSWLLDALKSDN---SNVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRN---CSHQRASVRDGYLTL 1719 (2612)
Q Consensus 1653 ~---~~~~ll~~L~~~L~~~~---~~~~R~~aa~~L~~i~~~~g~~~l~~----llp~l~~~---~~~~~~~vR~~~~~~ 1719 (2612)
. |++.++|.|...|.+.. ....|.....|++-+..++|++.+.+ ++..+... ..+.+...|...+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 6 89999999999987654 23456677889999999999887644 44444444 334578899999999
Q ss_pred HHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHH
Q 000051 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1799 (2612)
Q Consensus 1720 l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll 1799 (2612)
|+.+|+.+|++|.||++.++|+++....-..+.. ....+ ...+.-.++.|....
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~-------------~~d~~-------d~e~~~~~~~~e~~~------ 642 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVA-------------LSDEE-------DEEEEQDLDGWEVVE------ 642 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCccc-------------CcCch-------hhhhccccccchhhc------
Confidence 9999999999999999999999998765322110 00000 000000111221100
Q ss_pred HHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH
Q 000051 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1879 (2612)
Q Consensus 1800 ~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l 1879 (2612)
..+++.. | ..-....-+..|+..++.++......|
T Consensus 643 ------------------~~~~e~~-------------~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~~F 677 (1075)
T KOG2171|consen 643 ------------------LGDKENI-------------G--------------IRTSVLDEKETACEALGEYAKELKEAF 677 (1075)
T ss_pred ------------------cCCceee-------------e--------------eeehhHHHHHHHHHHHHHHHHhhhhhh
Confidence 0000000 0 011122346778899999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHh------chh----hhhhHHHHHhhhcC-CCChhHHHHHHHHH
Q 000051 1880 KEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKL------GER----VLPSIIPILSRGLK-DPSASRRQGVCIGL 1947 (2612)
Q Consensus 1880 ~~~l~~ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~------~~~----~l~~llp~L~~~L~-d~~~~vR~~a~~aL 1947 (2612)
.+|+...++..+.. .-..+..+|.+|+.++..+++.. ++. .+..+.|.+...++ .+++++-.....++
T Consensus 678 ~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f 757 (1075)
T KOG2171|consen 678 APYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESF 757 (1075)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 99999988844433 34778899999999999888654 222 34566777777666 46788889999999
Q ss_pred HHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHH
Q 000051 1948 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLK 2026 (2612)
Q Consensus 1948 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~ 2026 (2612)
++.+..+|+..+ .++...++..+...+.+...+.+. ....+.-++..-.--+.+. +...+.++
T Consensus 758 ~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~-----------r~~~~~eed~d~~eee~~~--e~d~~ll~--- 821 (1075)
T KOG2171|consen 758 AECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD-----------RQEEDDEEDDDIEEEEDLD--EQDAYLLD--- 821 (1075)
T ss_pred HHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHHHHHHh--hhhHHHHH---
Confidence 999888875443 233334433333322211111111 0000000000000000000 00011111
Q ss_pred HHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcc
Q 000051 2027 QILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID 2106 (2612)
Q Consensus 2027 ~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~ 2106 (2612)
.....+.+++...+.++.|++..+.|.++..+....+.-|..+..+++.++..++
T Consensus 822 -------------------------~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~ 876 (1075)
T KOG2171|consen 822 -------------------------AISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCG 876 (1075)
T ss_pred -------------------------HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 2335667777888999999999999999999977766559999999999999876
Q ss_pred c---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC
Q 000051 2107 E---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD 2166 (2612)
Q Consensus 2107 ~---~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d 2166 (2612)
+ .+...+++.++..+.|.+|.||++|.+.+|.+++..+.+|.+.....++.|...+..++
T Consensus 877 ~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ 939 (1075)
T KOG2171|consen 877 EASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPL 939 (1075)
T ss_pred cccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChh
Confidence 5 55889999999999999999999999999999999998888887787877777776443
No 5
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=364.09 Aligned_cols=1084 Identities=18% Similarity=0.210 Sum_probs=718.9
Q ss_pred CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
+...+.++..+++.|+|.+.+||..|.+|+++++.++++. .+.+++.+...+.... .+.|..+..+|..++..+++..
T Consensus 42 ~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 42 DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccch-hhhccHHHHHHHHHHhcCCCcc
Confidence 4456778999999999999999999999999999988764 5778888888877665 4789999999999998887522
Q ss_pred hh------hhcHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000051 1374 LK------KYGIAATLREGLADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446 (2612)
Q Consensus 1374 l~------~~~i~~~L~~~i~~~~-~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~ 1446 (2612)
-. -..+.+.+.+.+.... ....+-.++..++.+...+|..+.++...++..++..++-+...||+.|..+++.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 11 1245666666665432 3447778888888888889988888888899999999999999999999999999
Q ss_pred HHHhhcHHhHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh---cCCCHHHHHHHHHH
Q 000051 1447 MMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTA 1522 (2612)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L---~D~~~~VR~aA~~a 1522 (2612)
++...+.+.+..++..++++|... +...-+..+.+|++++..+...+..+++.++|.+.+++ +..+.+.|+.+.++
T Consensus 201 la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 201 LASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQA 280 (1233)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHH
Confidence 999999999999999999999754 45556678899999999999999999999999999999 66688999999999
Q ss_pred HHHHHhhcCC---hhHhhHHHHHHhhcC-CCChhHH----HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000051 1523 LQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2612)
Q Consensus 1523 L~~l~~~~~~---~~i~~ivp~Ll~~l~-d~~~~~r----~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~ 1594 (2612)
++.|....+. |++..++..+++.+. ||+.... +--+.+-.... ..+ ...-..-+|.+|.||+
T Consensus 281 le~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eD-----de~-----~deYsDDeD~SWkVRR 350 (1233)
T KOG1824|consen 281 LESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEED-----DEQ-----DDEYSDDEDMSWKVRR 350 (1233)
T ss_pred HHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhcccc-----chh-----ccccccccchhHHHHH
Confidence 9999987752 455666666666653 7753211 00000000000 000 0000011345899999
Q ss_pred HHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH--HhccCCCH
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSN 1672 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~--~L~~~~~~ 1672 (2612)
+|++++..+... ..+-+..++..+-|.+...+++....|+...+.++-.+....+. ..+++.+ ........
T Consensus 351 aAaKcl~a~IsS--R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 351 AAAKCLEAVISS--RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTP 423 (1233)
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCc
Confidence 999999988763 33445567778889999999999999999999999888876542 2222210 00000000
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC--
Q 000051 1673 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-- 1750 (2612)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~-- 1750 (2612)
..+....+.. ..++..+-+.+.+.+-..|.+++..+..+...+++...+|++.++|.+...+.|.+
T Consensus 424 s~~~~L~~~~------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 424 SDLSMLSDQV------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cchHHHHhhh------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 0111111111 12233333334455556899999999999999999999999999999999999875
Q ss_pred hhHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1751 ESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
...+..++..+...+...+++ .++.+.|.+.....|..+++-.+++-..+.++..+.+....... |...+
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~----d~~~~-- 565 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSF----DASPY-- 565 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccC----CCChh--
Confidence 356777777777776666665 34567788888899999999999999999998776443221111 00000
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~ 1906 (2612)
+...+ +-.++.+ ...|.+.+||+.|+.+++.++.+++..++..+|..++.++++++ ++-.|..|.
T Consensus 566 --v~~m~---------~~tl~rL--~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Av 630 (1233)
T KOG1824|consen 566 --VKTMY---------DCTLQRL--KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAV 630 (1233)
T ss_pred --HHHHH---------HHHHHHH--hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHH
Confidence 11111 1111111 24788999999999999999999999899999999999999996 567899999
Q ss_pred HHHHHHHHHhc----hhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHH
Q 000051 1907 RALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2612)
Q Consensus 1907 ~aL~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr 1982 (2612)
+++..++...- ...+..++|.+...++......|.+...++-+++...++..-...++.++..+-..+.+.|-.+.
T Consensus 631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt 710 (1233)
T KOG1824|consen 631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVT 710 (1233)
T ss_pred HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99998875431 22567778888877776677788999999999888776554455567777788888889999999
Q ss_pred HHHHHHHHHHHHHhCh---hhhhhhHHHHHHhccCCCcchHHHHHHHHHhh----hccccc-ccccchhhccCCcchhHH
Q 000051 1983 ESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQILS----VRTTAV-LPHILPKLVHLPLSAFNA 2054 (2612)
Q Consensus 1983 ~~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~----~~~~~v-lp~Lip~L~~~~~~~~~~ 2054 (2612)
+.|...+..+...... ...+.+++.++..++++--.+.++.++...+. ++.... .-.++..+..+-.....
T Consensus 711 ~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~- 789 (1233)
T KOG1824|consen 711 QLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVT- 789 (1233)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccc-
Confidence 9998888777654332 23467899999999988777777666554332 111100 11111111111100000
Q ss_pred HHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc---HHHHHHHHHhhcCCCChhHHHH
Q 000051 2055 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2055 ~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~---l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
.. -+...-...+.|.+.+...+++.. ...++..+.. ...+...|.-
T Consensus 790 -----------~~------------------l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvf 838 (1233)
T KOG1824|consen 790 -----------DG------------------LHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVF 838 (1233)
T ss_pred -----------cc------------------hhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHH
Confidence 00 001111223334444444443221 2222222222 1344566677
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh--
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR-- 2209 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~-- 2209 (2612)
|...+|.+..+.+....+ ++-..++..|+.++++|+.+|..|||.+....-..++|.+...+ .+...+...
T Consensus 839 a~LslGElgr~~~~s~~~---e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi----~sqpk~QyLLL 911 (1233)
T KOG1824|consen 839 ALLSLGELGRRKDLSPQN---ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI----ESQPKRQYLLL 911 (1233)
T ss_pred HHhhhhhhccCCCCCcch---hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH----hcchHhHHHHH
Confidence 777777776654332222 33335666777777777777777777776544444444433322 111000000
Q ss_pred -hhcC--CcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000051 2210 -KKKG--GPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2612)
Q Consensus 2210 -~~~~--~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~ 2286 (2612)
.-+. ....+.++ -.++..|...+.+-......-.|...++|||.++-.-+ +.+-|- |-..+.. ..+
T Consensus 912 hSlkevi~~~svd~~--~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-esLlpk-------L~~~~~S-~a~ 980 (1233)
T KOG1824|consen 912 HSLKEVIVSASVDGL--KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-ESLLPK-------LKLLLRS-EAS 980 (1233)
T ss_pred HHHHHHHHHhccchh--hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-HHHHHH-------HHHHhcC-CCc
Confidence 0000 00001111 13445566666665555555668899999999996655 444443 2222322 366
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC-hhHHHHHHHHhhhcCCHHH
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSDAGI 2365 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~Ll~~l~~~d~~v 2365 (2612)
..|..++.++.-.+.--+..+.+++.+-+.-|++.++|++..||..|..++...+...|. +..++|+|+.++.+. ..+
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e-Tkv 1059 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE-TKV 1059 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh-hhh
Confidence 778888887776666667788889999999999999999999999999999988766554 667889999988653 234
Q ss_pred HHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHhhcCCCCch
Q 000051 2366 REAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED-GQLADLLQELLNLASSPSWA 2444 (2612)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~-~~~~~~l~~ll~~~~~~~~~ 2444 (2612)
|...++ +| .+|+ +++--|+.-+.|.+|-+|+-.|....-+ -+..+|++.+-..+.+. ..
T Consensus 1060 rkelIr---eV--eMGP--------------FKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-yd 1119 (1233)
T KOG1824|consen 1060 RKELIR---EV--EMGP--------------FKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YD 1119 (1233)
T ss_pred hHhhhh---hh--cccC--------------ccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hH
Confidence 432211 11 1121 0222244557899999999888765332 24667777554444444 55
Q ss_pred hhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhcc------------CChhHHHhHHHHHHHHHhh
Q 000051 2445 ARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKD------------EKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2445 ~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~------------~~~~ir~~a~~alg~ll~~ 2502 (2612)
.+.-..+.+..+..-+|+.+.+ ..+.+++.+.+-+.- ...+..+.|.+|+..++.-
T Consensus 1120 iKmlt~l~l~rLa~lcPs~Vlq--rlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1120 IKMLTFLMLARLADLCPSAVLQ--RLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred HHHHHHHHHHHHHhhCcHHHHH--HHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 6776777777777788888753 355666665543321 1347788899999888554
No 6
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=2.4e-35 Score=372.12 Aligned_cols=318 Identities=26% Similarity=0.366 Sum_probs=246.6
Q ss_pred hHHHhHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhccch
Q 000051 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2612)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~kE~~e~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2612)
||||+.+++||..++. . .+|.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred h-HHHHHHHHHHHHHHh---hchhhhhhhhhHHHHHHHHHHhhhccccc-----hhHHHHHHHHHHHhhhhhhhHhhhhH
Q 000051 426 E-ALRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2612)
Q Consensus 426 ~-~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~ 496 (2612)
+ ++||+|+.++|.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++.... .+ ..+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~-~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LD-KIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-ch-hhhh--hh
Confidence 8 499999999999999 55677888999999999999999999765 45555555521111 11 2222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhhhhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000051 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2612)
Q Consensus 497 ~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vr~~a~~ 572 (2612)
..+|.++.++||+| +++|+|+| .++||.+|.+++++.++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47898888888885 56999999 6677888889999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-hHHHHHHHHHHhHhhhhhHhhccCCCCCCcccCCCCCCCCCHHHHHHHHHHhhccccc--c-----CC
Q 000051 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA--R-----GP 644 (2612)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-----~~ 644 (2612)
.+++++.++|+ +...++.++++|+....... ...+.+....... .....+++ ....... + .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~~~~---~~s~~~~~~~~~~------~~v~~ai~-~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSETGD---KESSAENSSDKNL------SPVLSAIC-LAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhccccc---ccccccccccccc------ccchHHHH-hhhHhhhccccchhHHH
Confidence 99999999998 78889999999997653111 0000110111111 11222221 1111111 0 34
Q ss_pred cchhhhhhhccCCccccccccccchhhhHHhHHhhCCChHHHHhhcHH
Q 000051 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2612)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~~~~~~~dp~~lv~~~~~ 692 (2612)
+.++++|++||||.|.. +++|+++| +| +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~--~~-~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLC--QR-AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHH--HH-cCCCHHHHHHhcCC
Confidence 67899999999999976 37899995 33 99999999999964
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=335.57 Aligned_cols=661 Identities=17% Similarity=0.223 Sum_probs=465.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheee-----------------cC-CchHHHHHHHH
Q 000051 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV-----------------HD-PEKSVAEAAED 1119 (2612)
Q Consensus 1058 ~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~la~~ 1119 (2612)
++.++|..++|||.++|+.|+.+|.+.. ..+++..+..+.++...- .+ .+++...-...
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 5678888899999999999999998864 345555554444443321 12 22333333456
Q ss_pred HHHhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1120 IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1120 ~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
.|-....+.++.+ ..++.+|+++.+..+..|++++|.++. +-| +.||+++..+.+.. .. ..+..+|++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv----~~-----~~~~~~k~~ 149 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV----GE-----EQASMVKES 149 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc----cc-----ccchHHHHH
Confidence 8987777777777 778899999999999999999999864 333 36677666665432 11 112258999
Q ss_pred HHHHHHHhhhhhCCCCh----hHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhCcc-----hhhhhHHH-HHHHhcc
Q 000051 1197 IALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHGRD-----NVSLLFPI-FENYLNK 1265 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~~~~----~~i~~~li~~~l-~d~~~~VR~~~~~a~~~~i~~~g~~-----~~~~Llp~-~~~~l~~ 1265 (2612)
+..+++|+++.+.++.. +.++..++.++. ..++..||.++.+|+...++.-+.+ .++.+|.+ +|.+..
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~- 228 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS- 228 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC-
Confidence 99999999998887654 346666665554 3578999999999987766654432 24555554 344333
Q ss_pred CCCChHHhhhHHhHHHHHHHHHhh-hhccCCcchHh-HHHHHHHhcCCCCHHHHHHHHhhhHHhHhh-------------
Q 000051 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------------- 1330 (2612)
Q Consensus 1266 ~~~~~~~~d~vr~~~i~~l~~La~-~l~~~~~~~~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~------------- 1330 (2612)
.+.+++.+++.++..|.. |++.-.+++.. ++..-+..++.++++|...+.+--+.+...
T Consensus 229 ------~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 229 ------PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 245788899888887773 33322355544 777788888888888876665543322210
Q ss_pred ----------hcchhHHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHH
Q 000051 1331 ----------MQDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2612)
Q Consensus 1331 ----------~~~~~~~li~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~ 1394 (2612)
.+.....++|.+++.|.++ ++|...++|..||..+++..|+..+. ++++++++.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 1112347899999999873 47999999999999999999999886 8999999999998 899
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-----HhHHHHHHhhhc
Q 000051 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-----~~ilp~Ll~~L~ 1468 (2612)
.|++|.++||++.++.. ..+.|++.+.+|.++..+.|+...||+++..+++.+.+.++.... ..+++.++++|.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999865 568899999999999999999999999999999999887764432 334444555554
Q ss_pred CCChhhHHHHHHHHHHHHhhCchhh---------hhhhchhHHHHhhhhc--C-CCHHHHHHHHHHHHHHHhhcCChhH-
Q 000051 1469 DKAWRTKQSSVQLLGAMAYCAPQQL---------SQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEI- 1535 (2612)
Q Consensus 1469 ~~~w~~r~~a~~~L~~ia~~~p~~l---------~~~L~~ivp~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2612)
+ ..++-..+|+++..+++.+++.. .++++.|+..|++.-+ | .....|.+|..||+.+.+...+...
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 35566667777776665543321 2345556666665543 2 3456777777777777766543221
Q ss_pred --hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1536 --ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1536 --~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
..+.+..+..+ ..++. .......+.. .-.++....|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl-------~q~i~----~~~l~~~dr~---------------q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKL-------DQTIS----SQILSLADRA---------------QLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHH-------HHHHH----HHhccHhhHH---------------HHHHHHHHHHHHHHHHHHHccc--cc
Confidence 11222211111 01111 0000000000 1125566677778887777654 88
Q ss_pred hhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000051 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2612)
.++.+.+|..+.+.++. .+..+.+.|+-+++.++..+|+. |++.+.|+|...|++..++.+-..+.--+|.+++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998 56678999999999999999976 789999999999987765655444444478899999
Q ss_pred ChhhH---HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC---CC--C------hhH
Q 000051 1690 GTVYF---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA---DE--N------ESV 1753 (2612)
Q Consensus 1690 g~~~l---~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~---d~--~------~~V 1753 (2612)
+.+.. ++++..+++.++++ +..+|...+++|+.++...|.+|.||++.+++.+.+.-+ |. + +.+
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 88743 78899999999886 677999999999999999999999999999998876542 22 1 235
Q ss_pred HHHHHHHHHHHHHHhh
Q 000051 1754 RDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~ 1769 (2612)
|++++++...++..+.
T Consensus 751 Re~~leay~gi~qglk 766 (859)
T KOG1241|consen 751 REGILEAYTGIIQGLK 766 (859)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666665555443
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-29 Score=298.57 Aligned_cols=767 Identities=18% Similarity=0.209 Sum_probs=509.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc---cccCChhhHhhHHHHHHHh
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~---~~~i~~~~l~~iip~L~~~ 1584 (2612)
...+++.+|+++...+.++-. -|++...+-.++-.....+..+|.+...+.+... ........+..+-..+.++
T Consensus 22 s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~ 98 (885)
T KOG2023|consen 22 SQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHG 98 (885)
T ss_pred ccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhh
Confidence 345789999999999998865 2444333333332333334445644444443211 1223345666777788889
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC--------CCch
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENFP 1656 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~--------~~~~ 1656 (2612)
+.|.++-+|....-++..++.. .-....+.++|.|.++|..++....+.|+.||..+++-..+ ..++
T Consensus 99 lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~ 173 (885)
T KOG2023|consen 99 LGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN 173 (885)
T ss_pred ccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH
Confidence 9999988887665555555442 22344588999999999999999999999999999874332 2456
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
-++|.+++..+.. +...|..+..|+-.++..-... .++.++..+....++.+++||...+.+|..+...-++.+.|
T Consensus 174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p 252 (885)
T KOG2023|consen 174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP 252 (885)
T ss_pred HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc
Confidence 7889999888776 4568998888887765443332 45778888899999999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH--Hh
Q 000051 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF--KV 1806 (2612)
Q Consensus 1734 ~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-----~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~--~~ 1806 (2612)
|+..++..++....|.+++|--.|.+....+.+.- -..+++.++|.|.++|.-.+..+ -+++.-=. .+
T Consensus 253 hl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~-----~LL~~~eeD~~v 327 (885)
T KOG2023|consen 253 HLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI-----ILLKNNEEDESV 327 (885)
T ss_pred chHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH-----HHhcCccccccC
Confidence 99999999999999999998777766666554321 12256778888887773221111 01110000 00
Q ss_pred cCC-------c--ccc----cc-cCCC-CCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 000051 1807 AGT-------S--GKA----LL-EGGS-DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2612)
Q Consensus 1807 ~~~-------~--~~~----~~-~~~~-ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2612)
++. - ++. .. ++++ |||+++. ...+..|+.|..++..+..+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD-------------------------dD~~~dWNLRkCSAAaLDVL 382 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD-------------------------DDAFSDWNLRKCSAAALDVL 382 (885)
T ss_pred CchhhhccchhhhchhccCcccccccccccccccc-------------------------ccccccccHhhccHHHHHHH
Confidence 000 0 000 00 0000 0000000 01345689999888888888
Q ss_pred HhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHH
Q 000051 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2612)
Q Consensus 1872 ~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~ 1948 (2612)
+.-.+. +.++.++|.+-..|.+.+|.+|.++.-++|.+++.+-.. .+|.++|.+.+.|.|+.+-||.-+|+.|+
T Consensus 383 anvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 383 ANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 776665 678999999999999999999999999999999887554 47889999999999999999999999998
Q ss_pred HHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHH
Q 000051 1949 EVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2612)
Q Consensus 1949 ~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~i 2028 (2612)
........+.-..|+..++..+++.+-|.+..|+++|+.||..+-+..|. +++|
T Consensus 460 Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp---------------------- 513 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVP---------------------- 513 (885)
T ss_pred hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHH----------------------
Confidence 86554443444567788888888888899999999999999888665443 3333
Q ss_pred hhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-CCHHHHHHHHHHHHHhhhhcc-
Q 000051 2029 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVID- 2106 (2612)
Q Consensus 2029 l~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~~- 2106 (2612)
|+..|+..|+.++.. ....+ ...-.|+++++.+++
T Consensus 514 ------------------------------------------~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 514 ------------------------------------------YLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGH 550 (885)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHH
Confidence 333333333333211 00000 011223344444332
Q ss_pred ----cccHHHHHHHHHhh---cCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 000051 2107 ----EEGVESLVSELLKG---VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 2179 (2612)
Q Consensus 2107 ----~~~l~~ll~~Ll~~---l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~ 2179 (2612)
..+++-+||.|++. ++|+|... ---++|+..++...+..|.||.+.+....+..+.. ++..
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~-----------t~q~ 618 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK-----------TLQL 618 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH-----------HHHH
Confidence 24567777777654 45555443 34567888888888888999988888887776632 1222
Q ss_pred HHhhcCcccc--c--cHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc------hhhHHHHHHHHhcCCHHHHHHH
Q 000051 2180 VVASVPKEVQ--P--SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL------QPLLPIFLQGLISGSAELREQA 2249 (2612)
Q Consensus 2180 l~~~~~~~~l--~--~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l------~~ilp~l~~~L~~~~~~~r~~a 2249 (2612)
+.+....... | .++-...+.+..... + ++.++ +.++..+++++.+..+++|+.+
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLae-----g-----------Lg~~ie~Lva~snl~~lll~C~~D~~peVRQS~ 682 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAE-----G-----------LGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSA 682 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHH-----H-----------hhhchHHHhhhccHHHHHHHHhccCChHHHHHH
Confidence 2232221100 0 000000011111000 0 01111 1277889999999999999999
Q ss_pred HHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CH
Q 000051 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TR 2327 (2612)
Q Consensus 2250 a~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~ 2327 (2612)
...+|++++... +.+.|+...+...+-..+.. ..-.+...|.+++|+++.++|...++|+..++..++..++.+ +.
T Consensus 683 FALLGDltk~c~-~~v~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~ 760 (885)
T KOG2023|consen 683 FALLGDLTKACF-EHVIPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPK 760 (885)
T ss_pred HHHHHHHHHHHH-HhccchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchH
Confidence 999999999986 78999988887655544432 245688899999999999999999999998888887777765 67
Q ss_pred HHHHHHHHHHHHHHhc-----cCChhHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc
Q 000051 2328 TVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2612)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~-----~~~~~~~l~~Ll~~l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2612)
++-.+.+-++|+|..+ .|+++.++...+..+++ .|.+-++++...+..++...+.... .....+...+-+. .
T Consensus 761 tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv-~~~~f~c~aiAsw-~ 838 (885)
T KOG2023|consen 761 TLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV-SSFIFICDAIASW-S 838 (885)
T ss_pred HHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh-hhhHHHHHHHhcc-c
Confidence 8889999999999554 36777788888777765 3567789999999998876544331 1122222333222 2
Q ss_pred CCCHHHHHHHHHHHHH
Q 000051 2402 HDDDHVRVSAASILGI 2417 (2612)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~ 2417 (2612)
+.++.+|....+.|..
T Consensus 839 np~~~l~~~f~kiL~g 854 (885)
T KOG2023|consen 839 NPEDDLRDEFYKILQG 854 (885)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3445566555544433
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-27 Score=283.75 Aligned_cols=747 Identities=17% Similarity=0.225 Sum_probs=512.6
Q ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhhCCCCh
Q 000051 1134 GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDL 1213 (2612)
Q Consensus 1134 ~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~~~~~~~ 1213 (2612)
.|++.-.++|..+|+.+-..+-..- .+|+.-..+.=.|.. ++ .+....|..+...|+.-...-....-
T Consensus 17 ~lLk~s~Spn~~~~~~~~~~leq~~-~~pdfnnYL~~IL~~-----~~------~~d~~~Rs~aGLlLKNnvr~~~~~~~ 84 (885)
T KOG2023|consen 17 QLLKNSQSPNSETRNNVQEKLEQFN-LFPDFNNYLIYILIR-----AK------SEDVPTRSLAGLLLKNNVRGHYNSIP 84 (885)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHh-cccchhceeeEEEec-----cc------ccchhHHHHhhhhHhccccccccCCC
Confidence 4445556789999998887764333 255543222211111 01 22345788888877755432111111
Q ss_pred hHHHHHHH---hhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhh
Q 000051 1214 PVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKH 1290 (2612)
Q Consensus 1214 ~~i~~~li---~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~ 1290 (2612)
++...|+- .++++|.++.+|......+..++...|-.+|++++|.+-++|..++. +..|+++..+..+++.
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICED 158 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHhh
Confidence 22333332 38899999999999888888898989999999999999999987443 3457777677666642
Q ss_pred ----hccC--CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhh---cCCChHHHHHHHHH
Q 000051 1291 ----LAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGAAFG 1361 (2612)
Q Consensus 1291 ----l~~~--~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~---~~~~~~~R~~Aa~~ 1361 (2612)
++.+ +..++.++++++++++++++.+|..+..|+..++....+..-..++..++.++ ++++..+|+..+.+
T Consensus 159 sa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~a 238 (885)
T KOG2023|consen 159 SAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRA 238 (885)
T ss_pred hHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 2222 34578899999999999999999999999998876655544344455555443 45567899999999
Q ss_pred HHHHHhhhCcchhh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHcCC-------
Q 000051 1362 LAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSD------- 1431 (2612)
Q Consensus 1362 L~~l~~~lg~~~l~-~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~--~~~~~~~~v~~ilp~ll~~l~D------- 1431 (2612)
+..+....+.+... -..+++++.+..++. |.++--.|+.....+++. +...+.||+.+++|.++..|.-
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99998766554332 126778877777777 566777788878888874 4467889999999999885421
Q ss_pred ----C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHHhHHhHHHH
Q 000051 1432 ----Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2612)
Q Consensus 1432 ----~---------------------------------------------~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2612)
. +.+.|+..+.+++.++..++.+....++|.
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 135788888899999988888888999999
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHH
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~L 1542 (2612)
+-+.|.+++|.+|.+++.+||+||+++-+.+-++||.++|.++.+|+|..+-||...|++|.+++..+-+..-
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~------- 470 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR------- 470 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999987642110
Q ss_pred HhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHH
Q 000051 1543 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622 (2612)
Q Consensus 1543 l~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~ 1622 (2612)
..++.-++.-+.+.+-|.+.+|+.+||.++..+-+..+ .++.||+..++.
T Consensus 471 ----------------------------~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~--~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 471 ----------------------------DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG--EELVPYLEYILD 520 (885)
T ss_pred ----------------------------HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHH
Confidence 01111223333444556677888889988888877543 488999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000051 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL---KSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2612)
Q Consensus 1623 ~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-----~~~~ll~~L~~~L---~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2612)
.+..++.--...--..-..|+|.++..+|.. |..-++|.|++.. ++++ .+---...|++.++.++|..++
T Consensus 521 ~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D--KdLfPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD--KDLFPLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc--chHHHHHHHHHHHHHHHhcccc
Confidence 8888775321111224566788888888753 6777888887654 3332 2445667888888888876533
Q ss_pred -------Hh---HhHHHHHhc---cC------CChhhHhHHHHHHHHhhhhhccchhhhHHh--HHHHHHhhcCCCChhH
Q 000051 1695 -------EH---ILPDIIRNC---SH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESV 1753 (2612)
Q Consensus 1695 -------~~---llp~l~~~~---~~------~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~--iip~ll~~L~d~~~~V 1753 (2612)
.. ++....+.. .. ++...--.++.++.-+++.+|...++.+.. +...++.++.|+.++|
T Consensus 599 P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peV 678 (885)
T KOG2023|consen 599 PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEV 678 (885)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHH
Confidence 11 111111111 11 122222357889999999999888887654 8999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1754 RDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~~~---~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
|..+..-++.+.+.+.+. .+..++|.+...+.-++-.+...|+-.+|++..++... .
T Consensus 679 RQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~----------------~---- 738 (885)
T KOG2023|consen 679 RQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK----------------M---- 738 (885)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh----------------h----
Confidence 999999999888776544 23457777776666666667778888888876443100 0
Q ss_pred HHHHHHhChhhHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGR 1907 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~ 1907 (2612)
..+...++..|+.. .......+-+...-++|.+.-..|..+.++++..+..-+..+.. .+.+.+..|.+
T Consensus 739 --------~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFr 810 (885)
T KOG2023|consen 739 --------KQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFR 810 (885)
T ss_pred --------hhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHH
Confidence 01223344444443 34445567777777889998889999999999888776666653 34567888999
Q ss_pred HHHHHHHHhchhhhhhHHHHH--hhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHH
Q 000051 1908 ALGELVRKLGERVLPSIIPIL--SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2612)
Q Consensus 1908 aL~~lv~~~~~~~l~~llp~L--~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2612)
.+..++...+..+...+.-+. .....++..+.|......|-..-...|......+..++
T Consensus 811 G~c~mi~vNp~~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf 871 (885)
T KOG2023|consen 811 GLCNMINVNPSGVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQF 871 (885)
T ss_pred HHHHheeeCchhhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcC
Confidence 999888766555433322221 12233444556655554444333333443444343333
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=2e-22 Score=282.88 Aligned_cols=1314 Identities=16% Similarity=0.150 Sum_probs=756.6
Q ss_pred HhHHHhhcCC--CHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000051 1133 SGLFKALSHS--NYNVRLAAAEALATALDEYPD----------SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2612)
Q Consensus 1133 ~~Ll~~l~~~--~~~vR~~aa~ala~~~~~~~~----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2612)
..+++.|.+. +...|+.+...|..+.+..++ .++.++..|. ..+..+|.-++.+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~--------------sg~~~vk~nAaaa 81 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR--------------SGTLGAKVNAAAV 81 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc--------------CCCHHHHHHHHHH
Confidence 4566666644 567777777777777655443 3333333331 1123566666666
Q ss_pred HHHhhhh-------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhC-cch------hhhhHHHHHHHhccC
Q 000051 1201 LHSAADV-------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDN------VSLLFPIFENYLNKK 1266 (2612)
Q Consensus 1201 l~~~~~~-------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g-~~~------~~~Llp~~~~~l~~~ 1266 (2612)
+..++.. .....++.++ ..+.+.+...|..+..++..+..... ++. ....+|.+...+...
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g 156 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC
Confidence 6666542 1122223333 33455678899998888877654321 111 145567777777653
Q ss_pred CCChHHhhhHHhHHHHHHHHHhhhhccCCcc-h-HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHH
Q 000051 1267 ASDEEKYDLVREGVVIFTGALAKHLAKDDPK-V-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLV 1339 (2612)
Q Consensus 1267 ~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~-~-~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li 1339 (2612)
.. .+..+++.++..+..|+.+-+..... + ...++.++..++++++.+|..++.++..++....+.. ...+
T Consensus 157 sk---~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaV 233 (2102)
T PLN03200 157 NK---QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAV 233 (2102)
T ss_pred ch---hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 22 22235666666777777644321111 1 2368889999999999999999888766654322211 2357
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cchhhhhcHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHH
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADR--------NSAKRREGALLAFECLCEK 1409 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~l~~~~i~~~L~~~i~~~--------~~~~~R~~Al~al~~L~~~ 1409 (2612)
+.+++.|..+++...|..|+.+|..++.+-. ...+...+.++.|.+.+... .+...++.|+.+++.++.+
T Consensus 234 P~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 234 KQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 7888877665556889999999999997421 11122234566666666532 1234477888999988865
Q ss_pred hcccchhhHH---------------------------------------HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHH
Q 000051 1410 LGRLFEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMS 1449 (2612)
Q Consensus 1410 ~~~~~~~~v~---------------------------------------~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~ 1449 (2612)
... +-+++. .+.+.+.+++.++++. +.+.+..++..++.
T Consensus 314 ~~~-ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 314 MSA-LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred chh-hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 322 111111 1123444444444333 24444444433322
Q ss_pred hhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1450 QLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1450 ~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
+..-. ......+.|+..+...+-..+..++..|..++.+..+....-. ...+|.|+++|.+.+..+|..|+++++.
T Consensus 393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~n 472 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAI 472 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 21000 0123345556666666678889999999998876554332221 3468999999999999999999999999
Q ss_pred HHhhcCC-h-hH--hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1526 VGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1526 l~~~~~~-~-~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
++..-.+ . .+ ...+|.|.+.+..++..++ +|+.++.+......--...+ ...+|.|...+++.+++.+..++.
T Consensus 473 La~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 9863221 1 11 4679999999998888776 67777765322110001111 246788888999999999999999
Q ss_pred HHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-------chhhHHHHHHHhccCCC
Q 000051 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-------~~~ll~~L~~~L~~~~~ 1671 (2612)
++.++... ++.+ .++.+..++..+++.++..+.++++.+......+. ...-+|.|.+.+.++.
T Consensus 553 AL~nLi~~-~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs- 622 (2102)
T PLN03200 553 TLTKLVRT-ADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK- 622 (2102)
T ss_pred HHHHHHhc-cchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-
Confidence 99999764 3321 33556677888889999999999999877444321 2356788888887764
Q ss_pred HHHHHHHHHHHHHHHHHhChh----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHH-hHHHHHHhh
Q 000051 1672 NVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDG 1745 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~-~iip~ll~~ 1745 (2612)
...+..++..++.++..-... .....+|.++..+.+.+..++..+..++..+.......- ..++. .++|++.+.
T Consensus 623 ~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 623 EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 557888888888887633221 125678999999999999999999999999997433221 12233 389999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhc---hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000051 1746 LADENESVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2612)
Q Consensus 1746 L~d~~~~VR~~Al~al~~lv~~~~~~---~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd 1822 (2612)
+.+.+..+++.++.++..++..-... .-...+|.+.+.+.+.+.+.|..++..+..+....+ -++
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hhH
Confidence 99999999999999998887643211 112367888888989999999999999988875421 000
Q ss_pred ccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHH--HHHHHHHHHhc--------ChhhHHHHHHHHHHHHHH
Q 000051 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVAN--------TPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~a--A~~~l~~l~~~--------~~~~l~~~l~~ll~~L~~ 1892 (2612)
.........| .+..|...+.-.+.+.-.. |++++..++.. .|+...--.|.-+..++.
T Consensus 771 ------~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~ 838 (2102)
T PLN03200 771 ------VLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVR 838 (2102)
T ss_pred ------HHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHH
Confidence 0000111111 3344444454444444443 88888888763 123222234555777888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHh----chhh--hhhHHHHHh-hhcCCCChhHHHHHHHHHHHHHHhhChhhH-----H
Q 000051 1893 SLASSSSERRQVAGRALGELVRKL----GERV--LPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----L 1960 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~----~~~~--l~~llp~L~-~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-----~ 1960 (2612)
++.+.++.+...|...|..+|+.- |+-+ .+..+..+. +.+++.+.++|.+.+..|-.-...+....+ .
T Consensus 839 ~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (2102)
T PLN03200 839 CLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDES 918 (2102)
T ss_pred HHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhh
Confidence 889999999999999999999642 2211 233333343 346677888888766554333332222111 2
Q ss_pred HhHhHHHHHHHHHhcCCc------HHHH----------------------------HHHHHHHHHHHHHhChhh--h--h
Q 000051 1961 SFMDELIPTIRTALCDSI------LEVR----------------------------ESAGLAFSTLFKSAGMQA--I--D 2002 (2612)
Q Consensus 1961 ~~l~~ll~~l~~~L~D~d------~~Vr----------------------------~~A~~al~~l~~~~g~~~--~--~ 2002 (2612)
.|+..++..+..++...+ .+++ ..|...+..++.+.+..- + .
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~ 998 (2102)
T PLN03200 919 GYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEA 998 (2102)
T ss_pred ccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhc
Confidence 355666666666553210 0000 012333333332211100 0 0
Q ss_pred hhHHHHHH----hccC-----CCcchHHHHH-HHHHh-hh----c---ccccccccchhhccCCc--chhHHHHHHHHHH
Q 000051 2003 EIVPTLLH----ALED-----DQTSDTALDG-LKQIL-SV----R---TTAVLPHILPKLVHLPL--SAFNAHALGALAE 2062 (2612)
Q Consensus 2003 ~ilp~Ll~----~L~~-----~~~~~~al~~-L~~il-~~----~---~~~vlp~Lip~L~~~~~--~~~~~~al~~La~ 2062 (2612)
.-+..+.+ .+.. ++..+.+... |..++ +. + .-..+|.|-+.+.+..+ ..+++++++++..
T Consensus 999 ~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~ 1078 (2102)
T PLN03200 999 GGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVC 1078 (2102)
T ss_pred ccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00111111 1110 1111222222 11111 11 0 11122322222222211 1134444443322
Q ss_pred Hh---------------------C-----------------------------------CChhhhHhhHHHHHHHhcCCC
Q 000051 2063 VA---------------------G-----------------------------------PGLNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2063 ~~---------------------g-----------------------------------~~l~~~l~~il~~Ll~~L~~~ 2086 (2612)
.- | -.....-.+.+|.|++.|+..
T Consensus 1079 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~ 1158 (2102)
T PLN03200 1079 NGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPI 1158 (2102)
T ss_pred cCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 00 0 000111234577777777644
Q ss_pred C--HHHHHHHHHHHHHhhhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh--ccHHHHH
Q 000051 2087 D--MDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV--DEAPNMI 2155 (2612)
Q Consensus 2087 ~--~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~--~~~~~il 2155 (2612)
+ +.+|..++..+..+....+ +.+.-+.+-..+....+ ......+..++..++.. .+.. .-....+
T Consensus 1159 ~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s--~s~e~a~~ElL~IL~~~--~e~~~~l~a~~~v 1234 (2102)
T PLN03200 1159 PDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQ--DSTEEAASELLRILFSS--PELRRHESAFGAV 1234 (2102)
T ss_pred cccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCc--cchhHHHHHHHHHHhCC--HHHHHHhhhhhHH
Confidence 3 3567777776666664221 11211222222222211 11233444455544411 1111 1123466
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHH
Q 000051 2156 STLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235 (2612)
Q Consensus 2156 ~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~ 2235 (2612)
..|+.++...+...|.+|..+|..+..... .+... .-...+|.|.
T Consensus 1235 ~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~----------~~~~~-------------------------~a~~ai~pLv 1279 (2102)
T PLN03200 1235 NQLVAVLRLGSRSARYSAARALQELFSAEH----------IRDSE-------------------------LARQAVQPLV 1279 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhhh----------hhhhh-------------------------hhhccchHHH
Confidence 677777777777777777777777654310 00000 0112356667
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhh--chhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKE--FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p--~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpq 2313 (2612)
..+.++....+..+..+|-.+++.-....... .=...+..++++|.+..+.+.+..++..+..+........++---.
T Consensus 1280 ~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~ag 1359 (2102)
T PLN03200 1280 EMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAAR 1359 (2102)
T ss_pred HHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhC
Confidence 77777777788888888888875432111100 0114456677888887667788877777654432111111122223
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc
Q 000051 2314 LQTTFIKCLQDSTRTVRSSAALALGKLSAL---------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV 2384 (2612)
Q Consensus 2314 L~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~---------~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~ 2384 (2612)
.+..++..|.|+...++..|..+|..|... ++-..|++. .+-.......+.++.+|..+....+...
T Consensus 1360 aV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~~~~~~v~ 1435 (2102)
T PLN03200 1360 CIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLGKDRPPCK 1435 (2102)
T ss_pred CHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHhCCChHHH
Confidence 566677777777677789999999998543 222333333 2222345567888888877763322222
Q ss_pred ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh--------HHHHHHHHHHhhcCCCCchhhHHHHHHHHHH
Q 000051 2385 SSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG--------QLADLLQELLNLASSPSWAARHGSVLVFATF 2456 (2612)
Q Consensus 2385 ~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~--------~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~ 2456 (2612)
.+....-+++.+.-.++...+.++..+++.+.-+.-+ +.- ...|++-.++ +.....| ..|++..+|..+
T Consensus 1436 ~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~al~~l~~i 1512 (2102)
T PLN03200 1436 LDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNN-SSIAKGQSAAKVVEPLFLLLT-RPDLGTW-GQHSALQALVNI 1512 (2102)
T ss_pred HHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-hhhccccchhhhhHHHHHHHh-ccCccee-cHHHHHHHHHHH
Confidence 2333445556565566656788889898887655422 110 1233333333 2223333 356677777766
Q ss_pred HhhCCccccCCc-hhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHH
Q 000051 2457 LRHNPSAISMSP-LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRR 2535 (2612)
Q Consensus 2457 l~~~p~~~~~~~-~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~ 2535 (2612)
+.. |....... -....++.++..+.+.++.+++.|.++++.++....-.. +..-...++++++.+.+++...|+.
T Consensus 1513 ~e~-~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~~~~~~~ 1588 (2102)
T PLN03200 1513 LEK-PQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGILSLQQR 1588 (2102)
T ss_pred HhC-cchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCChhHHHH
Confidence 653 32221111 123568888899999999999999999999887653110 0223458899999999999999999
Q ss_pred HHHHHHHHHhhCchhhhh
Q 000051 2536 ALSALKSVAKANPSAIMV 2553 (2612)
Q Consensus 2536 a~~~l~~~a~~~~~~v~~ 2553 (2612)
|+.+|......-|..|.+
T Consensus 1589 A~~aL~~~~~~w~~~v~~ 1606 (2102)
T PLN03200 1589 AVKALESISLSWPKAVAD 1606 (2102)
T ss_pred HHHHHHHhhcccHHHHHH
Confidence 999998777766666544
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.1e-25 Score=270.71 Aligned_cols=737 Identities=16% Similarity=0.267 Sum_probs=488.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChh--HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
.+++.+|..|-.-|.++.. ..+..++..|-+.+.|++.. .|.+... .|...+..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL--------------------~LKN~L~a 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGL--------------------QLKNSLTA 67 (859)
T ss_pred CCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhH--------------------HHhhhhcc
Confidence 4578889999888888764 34555666666666555432 3322111 12233444
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHh
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDAL 1666 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~-~g~~~~~~ll~~L~~~L 1666 (2612)
++++.+....+-+-.+-. +.. .++-..+...|..+.|..+..|+.+++.++.. ++...++++++.+....
T Consensus 68 kd~~~k~~~~qRWl~l~~------e~r---eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 KDPERKQQYQQRWLQLPA------EIR---EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred CCHHHHHHHHHHHHcCCH------HHH---HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 555555554443322211 222 23555667888889999999999999999874 33447899999998888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhChhhH----HhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHH--hH
Q 000051 1667 KSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QV 1738 (2612)
Q Consensus 1667 ~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~--~i 1738 (2612)
.++.+..++.++.+++|-++....++.+ ..++..+++.... ++..||-++..+|..--...+..|..-.+ .+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 7777667889999999999999988755 4566777776543 57889988888776655555555543322 26
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---h-hhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000051 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT---S-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2612)
Q Consensus 1739 ip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~-i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2612)
+.........++..|+.+|+.++-.++..|-.. + .+.+++.....+++++..+...+++.-..+..
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice---------- 288 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE---------- 288 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----------
Confidence 666677777788999999999999888765432 1 12244444444555555554444433332210
Q ss_pred ccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChh---h-HHHHHHHHHHHH
Q 000051 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK---T-LKEIMPVLMNTL 1890 (2612)
Q Consensus 1815 ~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~---~-l~~~l~~ll~~L 1890 (2612)
..+ +.. .+.=...-.+.|. . -+.-++.++|.|
T Consensus 289 ----------------EEi-D~~---------------------------~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 289 ----------------EEI-DLA---------------------------IEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred ----------------HHH-HHH---------------------------HHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 000 000 0000000001110 0 012233444555
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH
Q 000051 1891 ISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2612)
Q Consensus 1891 ~~~L~-------~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2612)
++.|. +.+|..-.+|..||.-+.+.+|+.++++++|++.+.+++|+|.-|..+..++|.++..-.+..+.+..
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV 404 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV 404 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence 54444 34678889999999999999999999999999999999999999999999999999877778889999
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh-----hhHHHHHHhccCCCcchHHHHHHHHHhhhccccccc
Q 000051 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID-----EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2612)
Q Consensus 1964 ~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~-----~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp 2038 (2612)
.+.+|.+...++|+.--||+.++.+|+++.+........ ..++.+++.|.++.
T Consensus 405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP---------------------- 462 (859)
T KOG1241|consen 405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP---------------------- 462 (859)
T ss_pred hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc----------------------
Confidence 999999999999999999999999999998765432221 12222222222221
Q ss_pred ccchhhccCCcchhHHHHHHHHHHHhCC---------ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc
Q 000051 2039 HILPKLVHLPLSAFNAHALGALAEVAGP---------GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG 2109 (2612)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~al~~La~~~g~---------~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~ 2109 (2612)
.+....+.++-+|++.+-. -..|+
T Consensus 463 ---------rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~-------------------------------------- 495 (859)
T KOG1241|consen 463 ---------RVASNVCWAFISLAEAAYEAAVSNGQTDPATPF-------------------------------------- 495 (859)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhccCCCCCCccchh--------------------------------------
Confidence 1222344555555553211 11223
Q ss_pred HHHHHHHHHhhcC--C-CChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2110 VESLVSELLKGVG--D-NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~--~-~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
+..++..|++... | .+...|.+|..+|+.+.++++.+..+.+..+......-++. + .+ +.+.....+
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q----~----i~--~~~l~~~dr 565 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ----T----IS--SQILSLADR 565 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH----H----HH--HHhccHhhH
Confidence 3334444443332 1 34567777777777777777666555443333333322210 0 00 011111111
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcChhhh
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSL 2265 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~-~~~~~r~~aa~~L~~li~~~~~~~l 2265 (2612)
+.+..+-..+...++..... + |-..+.....+|..|++.+.+ .+.-+.+.|..+++.++...| ..|
T Consensus 566 ~q~~eLQs~Lc~~Lq~i~rk-----------~-~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg-~~F 632 (859)
T KOG1241|consen 566 AQLNELQSLLCNTLQSIIRK-----------V-GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG-KGF 632 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------c-cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh-HhH
Confidence 11111111112222211100 1 112334556678888887776 456678899999999999999 789
Q ss_pred hhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-Hh
Q 000051 2266 KEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SA 2342 (2612)
Q Consensus 2266 ~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L-~~ 2342 (2612)
..|++.+.+-|.+.++...+..|..++....|.+++.++..+.||...+++.++++|+++ +++||.....++|.+ ..
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 999999999999999766677899999999999999999999999999999999999998 899999999999999 56
Q ss_pred ccCChhHHHHHHHHhhhcC-----C----------HHHHHHHHHHHHHHHHhcCC---C-cChHHHHHHHHHHHHhhcCC
Q 000051 2343 LSTRVDPLVGDLLSSLQVS-----D----------AGIREAILTALKGVLKHAGK---S-VSSAVKIRVYSVLKDLVYHD 2403 (2612)
Q Consensus 2343 ~~~~~~~~l~~Ll~~l~~~-----d----------~~vr~~~l~AL~~vi~~~g~---~-~~~~~~~~i~~~L~~~l~~~ 2403 (2612)
++.++++|+..++..++.. | .++|+++++|...++...+. . ...++.+.|++++...-.++
T Consensus 713 Ig~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~ 792 (859)
T KOG1241|consen 713 IGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEP 792 (859)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCc
Confidence 7888999988877766421 1 57899999999999998773 2 23589999999998877665
Q ss_pred --CHHHHHHHHHHHHHHHhhCChh
Q 000051 2404 --DDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2404 --~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
++.+...++.+||.|+..+|.+
T Consensus 793 ~~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 793 DVSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred ccchHHHHHHHHHHHHHHHHcccc
Confidence 4778889999999999999864
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=9.3e-21 Score=266.42 Aligned_cols=1350 Identities=16% Similarity=0.144 Sum_probs=735.8
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHhCC-Cc-------HHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2612)
++.|+..|.+.+...|+.+|.+|..+..... |. -...+..|....... + ...--++..+..+|..
T Consensus 101 IppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--s-----k~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 101 IPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--N-----KQDKVVEGLLTGALRN 173 (2102)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--c-----hhhHHHHHHHHHHHHH
Confidence 4678888988899999999999998865321 11 022233444332110 0 0011134445667777
Q ss_pred hhhhhCCCCh----hHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc--ch--hhhhHHHHHHHhccCCCChHHhhh
Q 000051 1204 AADVLRTKDL----PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DN--VSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1204 ~~~~~~~~~~----~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~--~~--~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
++..-++... ...+..++ ..+.+.++.++..+..++.......+. .. -...+|.|-+++... ....
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg-----~~~~ 247 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG-----NEVS 247 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC-----CChH
Confidence 7754332110 01223332 455678888888887776555443322 11 134578888888641 1236
Q ss_pred HHhHHHHHHHHHhhhhccCCcch--HhHHHHHHHhcCCCCHH---------HHHHHHhhhHHhHhhhcchhHHHHHHHHH
Q 000051 1276 VREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRLLD 1344 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~~~~~--~~i~~~L~~~L~~~~~~---------Vq~~~~~~L~~lv~~~~~~~~~li~~ll~ 1344 (2612)
+|+.+.-.++.|+.+-......+ ...++.|+..+..++.+ .|+.+.-+|+.+.... ..+++.+-+
T Consensus 248 VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L~~ 323 (2102)
T PLN03200 248 VRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYLGE 323 (2102)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHHHH
Confidence 78888888888886421100000 12456677777666543 4777878887776432 345555555
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhCcc-----hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhh-
Q 000051 1345 QLMKSDKYGERRGAAFGLAGVVKGFGIS-----SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPY- 1417 (2612)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~-----~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~-~~~~- 1417 (2612)
.+....+...--.+..++..++...... .+....+.+.|.+++++++..-+.+.+..++..+. |.. +...
T Consensus 324 ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~---gN~~l~~~L 400 (2102)
T PLN03200 324 LSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY---GNAYLSRKL 400 (2102)
T ss_pred hhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc---CChHHHHHH
Confidence 4433334443344556666664433221 12223456788888888754434555565554422 211 1111
Q ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh
Q 000051 1418 -VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2612)
Q Consensus 1418 -v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~ 1492 (2612)
-.+..+.++..+...+.+++..+..++..+...-... .-...+|.|++.|.+++-..+..++..++.++...+++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1256778888888888899999999998887542222 11457899999999888889999999999998765543
Q ss_pred hhh-hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-h-hH--hhHHHHHHhhcCCCChhHH-HHHHHHHhcccc
Q 000051 1493 LSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFV 1566 (2612)
Q Consensus 1493 l~~-~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~-~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~ 1566 (2612)
... .-...+|.|.++|..++.++|+.|+++|++++..-.+ . .+ ...+|.|++.+.+.+...+ .++.++... .
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL--i 558 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL--V 558 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH--H
Confidence 221 1257889999999999999999999999999874211 1 12 3578889999988776665 566665542 1
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch-hh--HhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PY--IGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~-~~--l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2612)
..-+. ..++.+...+...++.++..+.+.++++...... ++.. .. ....++.|.+++.++++.+++.|+.+|
T Consensus 559 ~~~d~----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 559 RTADA----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred hccch----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122 2335566677777889999999999998775432 2211 10 135789999999999999999999999
Q ss_pred HHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh---H--HhHhHHHHHhccCCChhhHh
Q 000051 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRD 1714 (2612)
Q Consensus 1644 ~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l--~~llp~l~~~~~~~~~~vR~ 1714 (2612)
..++..-.+. ...+.+|.++..+.+.+ ...+..++++|+.+......+. + ...+|.+++.+.+.+..+++
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e 712 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAE 712 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence 9998743221 23567888888887655 4478899999999886433221 1 34688899999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-h------hhhHHHHhhccCCC
Q 000051 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFND 1787 (2612)
Q Consensus 1715 ~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~-i------~~llp~L~~~l~d~ 1787 (2612)
.++.++..++..-...-.-.-...++++...+.+.++..|+.|..++..++...+.+. + ...+..+...+...
T Consensus 713 ~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~ 792 (2102)
T PLN03200 713 QAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST 792 (2102)
T ss_pred HHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999999988754321111124578999999999999999999999999887765332 1 12444555555554
Q ss_pred chHHHH--HHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHH
Q 000051 1788 NWRIRQ--SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865 (2612)
Q Consensus 1788 ~w~vR~--~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~ 1865 (2612)
+-+... .+++.+..+...=.+... .. .-+..+.+.-+ -+..+..++.+.++.+.+.|+
T Consensus 793 ~~~~~~~~~al~~l~~l~~~~~~~~~-----------~~---~~~~~~~e~p~------~l~~l~~~l~~~~p~~~~kai 852 (2102)
T PLN03200 793 DLDSSATSEALEALALLARTKGGANF-----------SH---PPWAVLAEVPS------SLEPLVRCLAEGHPLVQDKAI 852 (2102)
T ss_pred CcchhhHHHHHHHHHHHHhhcccCCC-----------CC---CchhhHHhccC------chHHHHHHHHcCChHHHHHHH
Confidence 444333 366666666542111000 00 00011111111 123333455666777777777
Q ss_pred HHHHHHHhcChhhHHHHHH---HHHHHHHHH-hcCCCHHHH---------------HHHHHHHH-------------HHH
Q 000051 1866 HVWKTIVANTPKTLKEIMP---VLMNTLISS-LASSSSERR---------------QVAGRALG-------------ELV 1913 (2612)
Q Consensus 1866 ~~l~~l~~~~~~~l~~~l~---~ll~~L~~~-L~~~~~~~R---------------~~A~~aL~-------------~lv 1913 (2612)
+++..++...|.-+..++. ..+..+..+ +++++.++| +....++. ++.
T Consensus 853 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (2102)
T PLN03200 853 EILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDML 932 (2102)
T ss_pred HHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7777777665544433332 122222221 122222222 11111111 111
Q ss_pred HHhc------------------------hh--------h-hhhHHHHHhhhcCCCChhHH-----HHHHHHHHHHHHhhC
Q 000051 1914 RKLG------------------------ER--------V-LPSIIPILSRGLKDPSASRR-----QGVCIGLSEVMASAG 1955 (2612)
Q Consensus 1914 ~~~~------------------------~~--------~-l~~llp~L~~~L~d~~~~vR-----~~a~~aL~~li~~~~ 1955 (2612)
+.-. +. . -+.+-=.|...+.+.++..| .++..++.+-+..+.
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~ 1012 (2102)
T PLN03200 933 KQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYT 1012 (2102)
T ss_pred hccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhc
Confidence 1000 00 0 00111111111111111111 122222222111110
Q ss_pred ---hhhH------------------------HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh-----hh
Q 000051 1956 ---KSQL------------------------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-----DE 2003 (2612)
Q Consensus 1956 ---~~~l------------------------~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~-----~~ 2003 (2612)
...+ .+-....+|.+-..+...+.--|.-|+++++++..+.+.... ..
T Consensus 1013 ~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~ 1092 (2102)
T PLN03200 1013 SNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSG 1092 (2102)
T ss_pred cCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhccc
Confidence 0000 111122333333444433444456666666655443221100 01
Q ss_pred hHHHHHHhccCCCc------------------chHHHHHHHHHh----hhcccccccccchhhccCCcch-hHHHHHHHH
Q 000051 2004 IVPTLLHALEDDQT------------------SDTALDGLKQIL----SVRTTAVLPHILPKLVHLPLSA-FNAHALGAL 2060 (2612)
Q Consensus 2004 ilp~Ll~~L~~~~~------------------~~~al~~L~~il----~~~~~~vlp~Lip~L~~~~~~~-~~~~al~~L 2060 (2612)
.++-++..+...+. +..+|+.|-.+= +......+|.++..|...+-+. ....|+..|
T Consensus 1093 ~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kL 1172 (2102)
T PLN03200 1093 AVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLL 1172 (2102)
T ss_pred ccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHH
Confidence 11222222211111 122333331111 1113445666666666443211 233344333
Q ss_pred HHHh-CCChhh-h--HhhHHHHHHHhcCCC-CHHHHHHHHHHHHHhhhhcccc-----cHHHHHHHHHhhcCCCChhHHH
Q 000051 2061 AEVA-GPGLNF-H--LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDEE-----GVESLVSELLKGVGDNQASIRR 2130 (2612)
Q Consensus 2061 a~~~-g~~l~~-~--l~~il~~Ll~~L~~~-~~~vr~~a~~al~~l~~~~~~~-----~l~~ll~~Ll~~l~~~~~~vR~ 2130 (2612)
...+ +..-++ . -...++.|...+... .......+.+.+..+. .+++ .-...++.|...++.++...|.
T Consensus 1173 r~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~--~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~ 1250 (2102)
T PLN03200 1173 TQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILF--SSPELRRHESAFGAVNQLVAVLRLGSRSARY 1250 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHh--CCHHHHHHhhhhhHHHHHHHHHhcCCHHHHH
Confidence 3322 111111 0 112334443333211 1112233333444332 2221 1234677888888999999999
Q ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccc-c-----cHHHHHHHHHHhhh
Q 000051 2131 SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQ-P-----SYIKVIRDAISTSR 2204 (2612)
Q Consensus 2131 ~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l-~-----~lv~~l~~~l~~~~ 2204 (2612)
.|+.+|..++......-.....+.++.|..++..........++++|-.+++....... . ..+..+.+.+....
T Consensus 1251 ~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~ 1330 (2102)
T PLN03200 1251 SAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDS 1330 (2102)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhccccc
Confidence 99999998876522111112234556666666666666666666666666654321100 0 11111111111110
Q ss_pred hhhhhhhcCCcccccC--CCCC----cCc-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-hhhhhhchhhhhHHH
Q 000051 2205 DKERRKKKGGPILIPG--FCLP----KAL-QPLLPIFLQGLISGSAELREQAALGLGELIEVTS-EQSLKEFVIPITGPL 2276 (2612)
Q Consensus 2205 ~~~~~~~~~~~~~l~g--~~~p----~~l-~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~-~~~l~p~v~~i~~pL 2276 (2612)
..+.. .....+-. |..+ +.+ ...++.+++.+.++.....+.++..|..++..-. .+.+..| ....|+
T Consensus 1331 ~~~l~---~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h--~a~vpl 1405 (2102)
T PLN03200 1331 SLELK---EDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAH--GAVVPL 1405 (2102)
T ss_pred chhHH---HHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHc--CChhhH
Confidence 00000 00000000 0000 000 1256777777777666667888888888875421 1122222 233355
Q ss_pred HHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-----cCChhHH
Q 000051 2277 IRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-----STRVDPL 2350 (2612)
Q Consensus 2277 i~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-----~~~~~~~ 2350 (2612)
+..+.. .+......|+.+|..++..-+......+ -..+..++-.|+......+..|+..|..+... ++...+.
T Consensus 1406 V~~ilr-vS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~ 1484 (2102)
T PLN03200 1406 VGLVVG-TNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKV 1484 (2102)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhh
Confidence 543332 3666677788888777622211111100 11233444456667789999999988776221 2334445
Q ss_pred HHHHHHhhhcCC--HHHHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh---
Q 000051 2351 VGDLLSSLQVSD--AGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED--- 2424 (2612)
Q Consensus 2351 l~~Ll~~l~~~d--~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~--- 2424 (2612)
+..++-.+-.+| ...+.+++++|-.+..+-...-.. --...+++.|...+++++..+++.++++++.+.....-
T Consensus 1485 ~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~ 1564 (2102)
T PLN03200 1485 VEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQD 1564 (2102)
T ss_pred hHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhh
Confidence 555554443333 456788999999998763221111 12356778888999999999999999999987643211
Q ss_pred ----hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHH
Q 000051 2425 ----GQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLL 2500 (2612)
Q Consensus 2425 ----~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll 2500 (2612)
..+.|+. +++ .......++.++.+|...-..+|..+...+..-++...+...--...-.+-+.|...+..++
T Consensus 1565 ~~~~~aI~pLv-~~l---~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~ 1640 (2102)
T PLN03200 1565 ITTQNAVVPLV-RLA---GIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNIL 1640 (2102)
T ss_pred hhcccchHHHH-HHh---cCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHh
Confidence 1122322 233 34445568888889988878888888777776666665554110022245666777777766
Q ss_pred hhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000051 2501 LHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2612)
Q Consensus 2501 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~ 2547 (2612)
...... +..=-++.|++.+++.+-.++..|+.+|-.++...
T Consensus 1641 ~~~~~~------~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~~d 1681 (2102)
T PLN03200 1641 RFSSEY------YFEVPVAVLVKLLRSTSESTVVVALNALLVLERDD 1681 (2102)
T ss_pred ccCcee------EEEeeHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 654321 11125566777777777778888888887777643
No 13
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.7e-22 Score=264.66 Aligned_cols=589 Identities=17% Similarity=0.231 Sum_probs=423.2
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-hhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
...+...+...+.+++|..|++.|.||-.++..++ .....-..++|...+...|.|.|+-+++.|.+.++-+++..+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34566777788889999999999999999998887 34455677889999999999999999999999999888877666
Q ss_pred hhhhhHHHHHHhccCC---------C------------cchHHHHHHHHHhhhcccccccccchhhccCC-------cch
Q 000051 2000 AIDEIVPTLLHALEDD---------Q------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLP-------LSA 2051 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~---------~------------~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-------~~~ 2051 (2612)
.-..++..|++.|..+ + ..++.+..++++|.-.++.--|.++.+..+-. -.-
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 6677888888777321 1 12457889999998889999999998876521 111
Q ss_pred hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhh---cccccHHHHHHHHHhhcCCCChhH
Q 000051 2052 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASI 2128 (2612)
Q Consensus 2052 ~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~---~~~~~l~~ll~~Ll~~l~~~~~~v 2128 (2612)
.++..++.|++-+|..+.||+++++|.|.++--|++..++.++...++.++.- +.++++++++.+|+..+.+..|++
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 36778899999999999999999999999999999999999999999999863 345789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhh
Q 000051 2129 RRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKE 2207 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~ 2207 (2612)
|.++|.++..+.+..+ .++.+.++++|..+++.+||-.+.||.++-.+...+.+-+-+.. ..+
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~------------d~~---- 1119 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC------------DVT---- 1119 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------------ccC----
Confidence 9999999999998765 45778999999999999999999999998877776654321100 000
Q ss_pred hhhhcCCcccccCCCCCcCchhhHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCH
Q 000051 2208 RRKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPW 2286 (2612)
Q Consensus 2208 ~~~~~~~~~~l~g~~~p~~l~~ilp~l~-~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~ 2286 (2612)
-|..-.+.+..++|.++ +|+++..+++|..+..++.++++..| ..++||.+.+++.|++..+.-.+.
T Consensus 1120 -----------~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1120 -----------NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred -----------CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchH
Confidence 00000134556788876 57778889999999999999999998 799999999999999888764322
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHH------HHHHHhc--cCChhHHHHHHHHhh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA------LGKLSAL--STRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~a------Lg~L~~~--~~~~~~~l~~Ll~~l 2358 (2612)
-.-..++.+.+.=... + ++.|..+++. ++.++.+ ...+.+++|.+.+.+
T Consensus 1188 vLnYls~r~~~~e~ea------------l-----------Dt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEA------------L-----------DTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred HHHHHHHhhhhhHHHH------------H-----------HHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1212222221110000 0 2233333332 2222211 023456778888887
Q ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 000051 2359 QVS-DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2612)
Q Consensus 2359 ~~~-d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2612)
+.+ .-+.|.+....+.-++..+|..+ .||....+..+...+.|+++.+|...+.+.|.|++.-.++....++..++.+
T Consensus 1245 R~sVgl~Tkvg~A~fI~~L~~r~~~em-tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~ 1323 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEM-TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLAD 1323 (1702)
T ss_pred hccCCCCcchhHHHHHHHHHHHhcccc-CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 654 24456677777777888888888 6799999999999999999999999999999999999988999999988776
Q ss_pred cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHH-HHhhhhccCCCCch-hhH
Q 000051 2438 ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGR-LLLHQIQSGPANTT-VVV 2515 (2612)
Q Consensus 2438 ~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~-ll~~~~~~~~~~~~-~l~ 2515 (2612)
+..+....+..+..++..+..+.++.+ .++...+++.++=.+.++ +.+.+-+-+ +.....+.+.+..+ +..
T Consensus 1324 ~l~k~es~~siscatis~Ian~s~e~L--kn~asaILPLiFLa~~ee-----~Ka~q~Lw~dvW~e~vsggagtvrl~~~ 1396 (1702)
T KOG0915|consen 1324 LLGKDESLKSISCATISNIANYSQEML--KNYASAILPLIFLAMHEE-----EKANQELWNDVWAELVSGGAGTVRLYLL 1396 (1702)
T ss_pred HhccCCCccchhHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHhCCCCcchhhhhHH
Confidence 544333323222222323666666655 356777888776544433 122222222 11111111222111 334
Q ss_pred HHHHHHH-hhcCCCCHHHHHHHHHHHHHHHhhCchhhh-hhHhHHHHHHHhhhcC
Q 000051 2516 DILASVV-SALHDDSSEVRRRALSALKSVAKANPSAIM-VHVALFGPALAECLKD 2568 (2612)
Q Consensus 2516 ~~l~~~~-~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~-~~l~~l~p~l~~~~~~ 2568 (2612)
+.+.... ...++.++-+|..++.+++..|..-...+. |....+.+.+..++..
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~G 1451 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNG 1451 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhc
Confidence 4444444 456788899999999999999987554443 5666666766666654
No 14
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=2e-22 Score=238.95 Aligned_cols=644 Identities=14% Similarity=0.155 Sum_probs=431.6
Q ss_pred ChHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCcchh-----------------hhhhhheee-cCCchHHHH
Q 000051 1055 QPNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIE-----------------VSTSLWIAV-HDPEKSVAE 1115 (2612)
Q Consensus 1055 ~~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~ 1115 (2612)
+..|+.+|.++ .+|||+++|..++.+|.+.... ++..++. ....+.++. |..+++..+
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~---dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~ 78 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSG---DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQK 78 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccc---cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 34578888877 6999999999999999886521 1111222 222223333 333444444
Q ss_pred HHHHHHHhcCCCCCCCh-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCC-CcHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 000051 1116 AAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD-EYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2612)
Q Consensus 1116 la~~~w~~~~~~~~~~~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 1192 (2612)
-+...|.....+.++.. ...+.+|.++.+..-.+||+.++++++ +-| ..||+++..+.... ++ ..+..
T Consensus 79 ~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv----g~-----eqp~~ 149 (858)
T COG5215 79 GCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV----GD-----EQPVS 149 (858)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc----cc-----cCchH
Confidence 46788988777776666 566789999999999999999999875 333 37787777766432 22 23445
Q ss_pred hhhHHHHHHHHhhhhhCCCChh----HHHHHHHhhhcC-CCcHHHHHHHHHHHHH-HHHhhCc----chhhhhHHHH-HH
Q 000051 1193 GRQGIALALHSAADVLRTKDLP----VIMTFLISRALA-DTNADVRGRMLNAGIM-IIDKHGR----DNVSLLFPIF-EN 1261 (2612)
Q Consensus 1193 ~R~~~~~al~~~~~~~~~~~~~----~i~~~li~~~l~-d~~~~VR~~~~~a~~~-~i~~~g~----~~~~~Llp~~-~~ 1261 (2612)
++.....+++|.++.-.++++. .++-.++.+++. .++..||.+++.|+.. .+-..|. ..++.+|.+. +.
T Consensus 150 ~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvcea 229 (858)
T COG5215 150 GKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEA 229 (858)
T ss_pred hHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehh
Confidence 6777888899998876664432 233334445654 4688999999999876 2222222 2345555543 33
Q ss_pred HhccCCCChHHhhhHHhHHHHHHHHHhh-hhccCCcchHh-HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhh--------
Q 000051 1262 YLNKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-------- 1331 (2612)
Q Consensus 1262 ~l~~~~~~~~~~d~vr~~~i~~l~~La~-~l~~~~~~~~~-i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~-------- 1331 (2612)
+-. .+.++..+++.++..|-. |+.--.+++.. +......+++.++++|...+.+--+.+....
T Consensus 230 tq~-------~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 230 TQG-------NDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred ccC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 222 234567777766666542 22111233333 4455567888999999887776543333211
Q ss_pred --c-----------chhHHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCC
Q 000051 1332 --Q-----------DEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNS 1392 (2612)
Q Consensus 1332 --~-----------~~~~~li~~ll~~L~~~------~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~ 1392 (2612)
+ ....+.+|.+++.|.++ ++|...+.|+.||...++..|...+. ++..++.+.++++ +
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~ 379 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-S 379 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-h
Confidence 1 01246889999999873 47999999999999999999999887 6999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----Hh-HHhHHHHHHhh
Q 000051 1393 AKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----QG-VKLVLPSLLKG 1466 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~-~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~----~~-v~~ilp~Ll~~ 1466 (2612)
|+.|++|+++||.+.++.. ....+++.+.+|.++..+.|+.-.|++.+..|++.+++.++. .+ +.......+.+
T Consensus 380 w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 380 WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 9999999999999998765 446788999999999999999999999999999999876543 22 12333334444
Q ss_pred hcCCChhhHHHHHHHHHHHHhh-------CchhhhhhhchhHHHHhhhh--cCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1467 LEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~ia~~-------~p~~l~~~L~~ivp~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+.+. .+.-..+++....++.+ .+..+.+.++.|+..|++.- .+.+...|.++..+|+.+....++. +.+
T Consensus 460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~-V~~ 537 (858)
T COG5215 460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA-VSD 537 (858)
T ss_pred hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh-HHH
Confidence 4432 22222333333333333 24456677788888777653 3556778999999999998876532 222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++-.+..... ++..+|+..+.+. ...-+... -.++...-+..+..+.+. .+.++.+.-
T Consensus 538 ~~a~~~~~~~---~kl~~~isv~~q~--l~~eD~~~---------------~~elqSN~~~vl~aiir~--~~~~ie~v~ 595 (858)
T COG5215 538 ILAGFYDYTS---KKLDECISVLGQI--LATEDQLL---------------VEELQSNYIGVLEAIIRT--RRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhhh--hhhHHHHH---------------HHHHHHHHHHHHHHHHHh--cCCCcccHH
Confidence 2222222111 1122333332210 00000000 124555556666666663 345788888
Q ss_pred hhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh
Q 000051 1618 GLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2612)
+++|..+.+.+... ...+-.....+++++...+|+. |.+.++|++...+.. .+..+-..+.--++.+...+|.+.
T Consensus 596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 596 DQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999876 3456678889999999988865 778999999998843 334344455555788899999874
Q ss_pred H---HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1694 F---EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1694 l---~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
. +.++..+.+.++++ +..+|...+++|+.++..+|..|.+|++.++-.+.+.
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3 67788888888775 6779999999999999999999999999988776654
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-20 Score=229.37 Aligned_cols=675 Identities=18% Similarity=0.243 Sum_probs=469.8
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcc-hhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC
Q 000051 1216 IMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2612)
Q Consensus 1216 i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~-~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~ 1294 (2612)
+++.|+ -..+..+..|..+++.+..-...+|.. .++.++|++.+ .. -+|.-|+..+..+.++--.++..
T Consensus 365 i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs------~t--LeDqerhllVkvidriLyklDdl 434 (1172)
T KOG0213|consen 365 IMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMS------PT--LEDQERHLLVKVIDRILYKLDDL 434 (1172)
T ss_pred HHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcC------cc--ccchhhhhHHHHHHHHHHhhccc
Confidence 444442 246677888999999888777777765 35666665432 11 12334666666666665555432
Q ss_pred -CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch
Q 000051 1295 -DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1295 -~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
.|++..|+-.+-..+-+++.-.|...-+.++.+....+ ....+..+-..+. ..|.-+|...+.+.+.+++.+|...
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDid-n~deYVRnttarafavvasalgip~ 511 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDID-NKDEYVRNTTARAFAVVASALGIPA 511 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCcc-cccHHHHHHHHHHHHHHHHHhCcHH
Confidence 57777766666667778877777777677776665544 2222222222222 2244579999999999999999764
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2612)
+.++|+..+.++++|..|+.++.+...++.-.|...-||+..++..+-.++.|....||-.++.++..+++...+
T Consensus 512 -----llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P 586 (1172)
T KOG0213|consen 512 -----LLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP 586 (1172)
T ss_pred -----HHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC
Confidence 578899999999899999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhH---HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCch---hhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1454 QGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ---QLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1454 ~~v---~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~---~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+++ ..++.+|.+++....- ++-..+|.++.+.+|. ....++ ..++-.+.+-.+.++.+.++...+.+.++
T Consensus 587 ygie~fDsVlkpLwkgir~hrg---k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qc 663 (1172)
T KOG0213|consen 587 YGIEQFDSVLKPLWKGIRQHRG---KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQC 663 (1172)
T ss_pred cchHHHHHHHHHHHHHHHHccC---hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 864 7788888877653221 1123445566665543 222222 35555666777788888888888888888
Q ss_pred HhhcC-Chh-H-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000051 1527 GSVIK-NPE-I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2612)
Q Consensus 1527 ~~~~~-~~~-i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l 1603 (2612)
+...+ ++. + ..++|.++... +.-|.|++ .++ -+...+.-..+
T Consensus 664 c~t~Gv~~~y~r~dilp~ff~~f----w~rrmA~d----------------------------rr~---ykqlv~ttv~i 708 (1172)
T KOG0213|consen 664 CATDGVEPAYIRFDILPEFFFSF----WGRRMALD----------------------------RRN---YKQLVDTTVEI 708 (1172)
T ss_pred hcccCCCHHHHhhhhhHHHHhhh----hhhhhhcc----------------------------ccc---hhhHHHHHHHH
Confidence 76544 232 2 45555555432 11111110 011 01111222334
Q ss_pred hhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHH
Q 000051 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGA 1678 (2612)
Q Consensus 1604 ~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~a 1678 (2612)
|..++. +.++..+..-+.|..+..|...+.++..+...+|..-+ ..++..++..++.++.. + .-.
T Consensus 709 a~KvG~--------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~-d-~vm 778 (1172)
T KOG0213|consen 709 AAKVGS--------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE-D-SVM 778 (1172)
T ss_pred HHHhCc--------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc-h-hhh
Confidence 544444 23555556666788888999999999999888885422 35566666666654432 1 234
Q ss_pred HHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcCCCChhHH
Q 000051 1679 AQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLADENESVR 1754 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~d~~~~VR 1754 (2612)
..+++.+...+|.. ++..+...++..++++.+.+|+.+..+++.++..+...- ...+..+=-.++.+|..+.++|-
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHH
Confidence 56788888888863 667888888899999999999999999999987665320 12334444567889999999999
Q ss_pred HHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1755 DAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1755 ~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
-..+.|+..++...+-+ .+..++|.+.-.+.+.+.++...++.++|.+...-+ + +
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp--------------E-~------ 917 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP--------------E-Y------ 917 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc--------------c-c------
Confidence 99999999998877543 456788998888899999999999999998853311 1 1
Q ss_pred HHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~ 1910 (2612)
.+...+-++.-.|...+...+..+|++|...++.++..-+. ..++..|++.|+..+...|....-+++
T Consensus 918 ------v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 918 ------VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 11111223333333445556788999999999999986654 134555666677667777877777777
Q ss_pred HHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000051 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1911 ~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~ 1990 (2612)
-+.+.+|+. .++|.|..-.+.|+.+|++|++.+++-+.+..+ +.-.+|+-.+.|.+..++.|.|..-|..|..++.
T Consensus 986 IVaE~c~pF---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 986 IVAETCGPF---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred hhhhhcCch---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHH
Confidence 777776653 567788877888999999999999998887765 4456788999999999999999999999887776
Q ss_pred HHH
Q 000051 1991 TLF 1993 (2612)
Q Consensus 1991 ~l~ 1993 (2612)
.+.
T Consensus 1062 Hl~ 1064 (1172)
T KOG0213|consen 1062 HLA 1064 (1172)
T ss_pred HHh
Confidence 553
No 16
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=1.3e-19 Score=237.98 Aligned_cols=825 Identities=17% Similarity=0.226 Sum_probs=511.6
Q ss_pred HHHHhCCCCHHHHH-HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHH
Q 000051 1384 REGLADRNSAKRRE-GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~-~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~ 1462 (2612)
....++. .|.+|- .++.++-.+....+..+..+..+.+-.+...+.+.....|..+...................+-.
T Consensus 540 ~~~~q~~-~~~vr~~~~l~~~~~~~s~~pE~~~~~~~~~~~~~~sll~~~~~~mr~~~a~~y~~~~~~~~~~e~~~~l~~ 618 (1702)
T KOG0915|consen 540 TSAEQHA-VASVRIVSALECLYTVVSYAPEMVALKFSDKIEWLRSLLSNTSESMRESVAQLYGMASCALSDAESCSELSN 618 (1702)
T ss_pred HHHHHHH-HHHhhhhHHHHHHHHHHhhhhHHhhHhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3334433 344554 34555555666677777777788888888899999999999988887777665555544333333
Q ss_pred HHh-hhcCCChhhHHHHHHHHHHHHhhC----chhhhhhhchhHHHHhhhhcCCC--HHHHHHHHHHHHHHHhhcC----
Q 000051 1463 LLK-GLEDKAWRTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLTDTH--PKVQSAGQTALQQVGSVIK---- 1531 (2612)
Q Consensus 1463 Ll~-~L~~~~w~~r~~a~~~L~~ia~~~----p~~l~~~L~~ivp~L~~~L~D~~--~~VR~aA~~aL~~l~~~~~---- 1531 (2612)
++. .++.+....+++.+..+|-...++ +......=...+|.+.+.+++-. +-+..++..++..+...-.
T Consensus 619 ~i~~~~~~~~le~~hg~l~~~g~~~~~~la~~~t~~~~i~~~a~~~~v~~v~~le~a~~l~s~~~~~~~~id~~~~i~~~ 698 (1702)
T KOG0915|consen 619 LISNILQPKKLEAQHGGLLAVGFTSARCLARIKTVSKAITQIALPYLVNVVNSLEEAPLLASAAVEALSHIDKTGAIPNL 698 (1702)
T ss_pred HHHhhccccccchhhheeeeeecccccchhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHhhhccccccchh
Confidence 333 334444556666665554332211 11000000112233333333211 1355555555554443210
Q ss_pred --------------Chh----H--h--hHHHHHHhhcCCCChh--HH-HHHHHH--------------------------
Q 000051 1532 --------------NPE----I--A--SLVPTLLMGLTDPNDH--TK-YSLDIL-------------------------- 1560 (2612)
Q Consensus 1532 --------------~~~----i--~--~ivp~Ll~~l~d~~~~--~r-~al~~L-------------------------- 1560 (2612)
.+. . + ..+..+++.+.++... .+ .++..+
T Consensus 699 ~~~~~~~~~~~~~~~~~~sk~~s~~kv~~~glll~~i~s~~~~~~~~e~~l~yl~~g~g~~~~~~l~~~~l~~s~~~k~~ 778 (1702)
T KOG0915|consen 699 VADSSLGTQVREDSQERLSKLLSGDKVQKFGLLLQHICSSKASSKILEIALGYLFSGSGDKAEEILFAAGLALSFLWKQV 778 (1702)
T ss_pred HhhhcccccccCCCccccccccccchhhhHHHHHhhhcChhhhhhHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 000 0 0 1222333333222110 00 011000
Q ss_pred --------------Hhc--cccc--------cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1561 --------------LQT--TFVN--------TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1561 --------------~~~--~~~~--------~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
+.+ .+.. ...+.....+...+.+.+.++++..|.+.+-++-.+...++..+.....
T Consensus 779 ~l~~~i~e~~~~~~~~~ds~~le~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~ 858 (1702)
T KOG0915|consen 779 PLTFDIGEAINYTALGTDSNFLEEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLM 858 (1702)
T ss_pred chHHHHHHHhhhhhcccchhhcccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhc
Confidence 000 0000 0112333446666777888999999999999998888887766777778
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHH---------------------HH
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV---------------------ER 1675 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~---------------------~R 1675 (2612)
.+.+...+...|.|++.-++..|.+.+|-+.+.-+.+.-..++..|+++|....... -.
T Consensus 859 ~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~ 938 (1702)
T KOG0915|consen 859 LKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGK 938 (1702)
T ss_pred cHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCc
Confidence 888999999999999999999999999987775555556778888888776422110 00
Q ss_pred HHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHH
Q 000051 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754 (2612)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR 1754 (2612)
....+.|..++..+|. ++++-.+++.+++ ..|..|.|+..-|+.++...|...+||+.+++|.++.+=-|++..|+
T Consensus 939 isTYKELc~LASdl~q---PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq 1015 (1702)
T KOG0915|consen 939 ISTYKELCNLASDLGQ---PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQ 1015 (1702)
T ss_pred chHHHHHHHHHhhcCC---hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHH
Confidence 1111223333333333 3456667777775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1755 DAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1755 ~~Al~al~~lv~~---~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
.+.......++.. .-+++...++.+|..++.+.-||+|.+++-.+.+++..- +-+
T Consensus 1016 ~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~-------------~~~--------- 1073 (1702)
T KOG0915|consen 1016 DAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGR-------------PFD--------- 1073 (1702)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC-------------ChH---------
Confidence 8877666666532 233456668888888999999999999999999998431 000
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~ 1911 (2612)
.+. +...+++..+|..++|....||++|-.....+ ..++-++.|...
T Consensus 1074 ~~~-----e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~l----------------sKl~vr~~d~~~------------ 1120 (1702)
T KOG0915|consen 1074 QVK-----EKLPELWEAAFRVMDDIKESVREAADKAARAL----------------SKLCVRICDVTN------------ 1120 (1702)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhhcccCC------------
Confidence 111 23457888888888998888988876654322 122222222210
Q ss_pred HHHHhchhhhhhHHHHHhh-hcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHH-H----
Q 000051 1912 LVRKLGERVLPSIIPILSR-GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES-A---- 1985 (2612)
Q Consensus 1912 lv~~~~~~~l~~llp~L~~-~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~-A---- 1985 (2612)
..-|..++..++|.+.. ++-+..+++|..++..+..+..+.| ..+.+|.+.++|.+..+...-.+.|-.. +
T Consensus 1121 --~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~ 1197 (1702)
T KOG0915|consen 1121 --GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLI 1197 (1702)
T ss_pred --cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchHHHHHHHHhhh
Confidence 00123356777887764 5558889999999999999876554 5789999999999999887655544321 2
Q ss_pred ---HHHHHHHH-----------------HHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhc
Q 000051 1986 ---GLAFSTLF-----------------KSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2612)
Q Consensus 1986 ---~~al~~l~-----------------~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~ 2045 (2612)
..++++.- .+.....+++++|.+.+.++.+- .
T Consensus 1198 ~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-------------------g--------- 1249 (1702)
T KOG0915|consen 1198 NIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-------------------G--------- 1249 (1702)
T ss_pred hhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-------------------C---------
Confidence 22222221 11112222222222222222111 0
Q ss_pred cCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCC
Q 000051 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQ 2125 (2612)
Q Consensus 2046 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~ 2125 (2612)
-+.....+..+..|+.-.|.++.||.+.++..++..+.|.++.+|..-..|++.++..-.++....++..+...+-.+.
T Consensus 1250 -l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~ 1328 (1702)
T KOG0915|consen 1250 -LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKD 1328 (1702)
T ss_pred -CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccC
Confidence 1122346777888888899999999999999999999999999999999999999987777778888888887775555
Q ss_pred hhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST---TVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~---V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
+..+..+|..+..|..+....+..|...++|..+-...+.+.+ .....|.. +
T Consensus 1329 es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e-----------------------~-- 1383 (1702)
T KOG0915|consen 1329 ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAE-----------------------L-- 1383 (1702)
T ss_pred CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------------h--
Confidence 5555777777777888888888899999999887766543211 11111110 0
Q ss_pred hhhhhhhhhcCCcccccCCC--CCcCchhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH
Q 000051 2203 SRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 2279 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~--~p~~l~~ilp~l~~~L~~-~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~ 2279 (2612)
++|-. ++-+...++-.+++...+ ..+..|.+++.++..++..+....-.|+...+...+...
T Consensus 1384 ---------------vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~ 1448 (1702)
T KOG0915|consen 1384 ---------------VSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDT 1448 (1702)
T ss_pred ---------------CCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHH
Confidence 11111 011223344444444444 458899999999999887776333447777777667777
Q ss_pred hcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 2280 IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKL 2340 (2612)
Q Consensus 2280 l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L 2340 (2612)
+..+ .|+-|...+.++.....++...+..-.|.+.....+.....+...+..+..+.|..
T Consensus 1449 L~GR-iwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~sr~~~~y~~~ala~~~~~ 1508 (1702)
T KOG0915|consen 1449 LNGR-IWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVSRREAKYKIMALAGAGLA 1508 (1702)
T ss_pred hhcc-ccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 7776 78888888888887666655544443443333333333333344444444444443
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.8e-20 Score=226.11 Aligned_cols=719 Identities=15% Similarity=0.221 Sum_probs=489.5
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
..++..+..|..+...+..=...+... -+++++|.+++. |+++ .|+--+.++..+.+...+...++..+|+-.+-
T Consensus 371 kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDq---erhllVkvidriLyklDdlvrpYVhkILvVie 447 (1172)
T KOG0213|consen 371 KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQ---ERHLLVKVIDRILYKLDDLVRPYVHKILVVIE 447 (1172)
T ss_pred hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccch---hhhhHHHHHHHHHHhhcccchhceeeeEEEee
Confidence 446777888888766665555555443 458888887763 5443 46777888888888877777777777766666
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
.++-|.+...|....+.|.++++..+ +..++..+-.-+.+.++++|+ +...+. ++--.+.+.|.|
T Consensus 448 pllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafavva--------salgip~llpfL 516 (1172)
T KOG0213|consen 448 PLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAVVA--------SALGIPALLPFL 516 (1172)
T ss_pred cceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHHHH--------HHhCcHHHHHHH
Confidence 78889999999998888888887655 223333333333444566763 222221 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000051 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2612)
Q Consensus 1582 ~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ 1657 (2612)
.....++ +|+-|..+..++..+|..++- ...||+..++..+...+.|....||..++.+++.+++..++ +.|+.
T Consensus 517 kavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDs 594 (1172)
T KOG0213|consen 517 KAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDS 594 (1172)
T ss_pred HHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHH
Confidence 8877776 999999999999999988765 68899999999999999999999999999999999998765 46888
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh----HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
++..|.+....+.+. .-.....+++-++.-...++ -.++|-.+..-.++++.+.+...+..+...|..-|-+ ..
T Consensus 595 VlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 888888887766533 23334455565555444442 2456667777888999999999999999999887753 22
Q ss_pred hH-HhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1734 YL-QQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1734 ~l-~~iip~ll~~L~d~~~~VR~~Al---------~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
|+ .+++|.++.... .|..|+ ..-..++...| .+.++..+...+.|++...|.-.++.+..++
T Consensus 673 y~r~dilp~ff~~fw-----~rrmA~drr~ykqlv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFW-----GRRMALDRRNYKQLVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHhhhhhHHHHhhhh-----hhhhhccccchhhHHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHH
Confidence 33 457788776543 222222 11112222222 2234444555667788777777777766665
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
..++.. |-+ ..+.+ +++..++..+.+....+. ..+..++.++...+...++|+
T Consensus 745 ~~lg~~-----------did-------erleE--------~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpyl 797 (1172)
T KOG0213|consen 745 GRLGAA-----------DID-------ERLEE--------RLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYL 797 (1172)
T ss_pred hccccc-----------ccc-------HHHHH--------HHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccch
Confidence 433211 000 11111 122222222211111111 345677778887887788999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---chh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhH
Q 000051 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKL---GER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2612)
Q Consensus 1884 ~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~---~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l 1959 (2612)
|.+...++.+|+++.+.+|+.|+..++.++..+ ++. .+.++=-+|.+.+....+++--..+.++..|...++-..+
T Consensus 798 pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887654 333 6677777888899999999988888888887777665556
Q ss_pred HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccccccc
Q 000051 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLP 2038 (2612)
Q Consensus 1960 ~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp 2038 (2612)
.+-...++|.+...|.+.+..|.++....++.++...... ...+...... .-+..+.+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-------------eLlelLkahk------ 938 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-------------ELLELLKAHK------ 938 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-------------HHHHHHHHHH------
Confidence 6667888999999999999999999999999998753321 1122211111 1111111000
Q ss_pred ccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 000051 2039 HILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2612)
Q Consensus 2039 ~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2612)
..+.-.+...+|.|++..|+ ..++..|++.|+..+...|....-+++.+...++ .-.++|.|+
T Consensus 939 --------K~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~---pFtVLPalm 1001 (1172)
T KOG0213|consen 939 --------KEIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCG---PFTVLPALM 1001 (1172)
T ss_pred --------HHHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcC---chhhhHHHH
Confidence 11222356789999998887 3688888998887777777666656655554433 457899999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2119 ~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
.-.+-++..++...+.++..+|+..+..-.+|+-.+.+.|...+-|.|..-|+.|..++..+.-..+
T Consensus 1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~------------- 1068 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP------------- 1068 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC-------------
Confidence 9999999999999999999999998887788888899999999999999889888888777654422
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
|+.....+..++..+--.+...+|.+.....+|+..+....|+..+-.|+
T Consensus 1069 ---------------------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1069 ---------------------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred ---------------------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 22111112222333333344556666666777777777777766665553
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.3e-21 Score=239.81 Aligned_cols=471 Identities=22% Similarity=0.327 Sum_probs=355.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCC
Q 000051 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~ 1670 (2612)
.+|....-..|.++... ...+.. ...++..+...+..|.+.+|.+...|+..+........-..+.+.+.+.+. ..
T Consensus 71 ~~~~~~~v~~~~~a~~~-~~~d~~--~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~ 146 (569)
T KOG1242|consen 71 NLRNNVVVLEGTLAFHL-QIVDPR--PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT-ST 146 (569)
T ss_pred HHhhhhHHHHHHHHHhc-cccCcc--hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-cc
Confidence 44444444445555432 222323 335788888889999999999999999999887665555556666666666 34
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhccCCC-hhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1671 SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~~~~-~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
....|.+++.+++.+..+.|.+.+ ..++..+.....+.+ ...|++++.++......+|..|+||+..++|.++..+.
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFG 226 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhh
Confidence 466899999999999999888766 456777777777764 45566899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchH
Q 000051 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~ 1827 (2612)
|..+.||.++..+...++..+...+++.++|.+...+.+..||...++++++|.+.+..+
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap-------------------- 286 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP-------------------- 286 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch--------------------
Confidence 999999999999999999999999999999999999988899999999999998875532
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000051 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2612)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~ 1907 (2612)
..+. ....++++.+-..++|+..+||+++..++..+...... +-+..++|.++.++++++..+.. +..
T Consensus 287 ---~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~~~e-~~~ 354 (569)
T KOG1242|consen 287 ---KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCYTPE-CLD 354 (569)
T ss_pred ---HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccchHH-HHH
Confidence 1121 13456777777788999999999999998887763322 12455566777888887733332 222
Q ss_pred HHH--HHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhHHHhHhHHHHHHHHHhcCCcHHHHHH
Q 000051 1908 ALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEVRES 1984 (2612)
Q Consensus 1908 aL~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~-~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~ 1984 (2612)
.|+ .++..+.+..+.-++|++.+++.+.+...+..++..++.+.... .+..+.+|++.++|.+...+.|+.|+||..
T Consensus 355 ~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 355 SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 222 34444556678899999999999999999999999999887777 677889999999999999999999999999
Q ss_pred HHHHHHHHHHHhChhhhhhhHHHHHHhccCCC---cchHHHHHHHHHhhhcccccccccchhhccC--------CcchhH
Q 000051 1985 AGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLPHILPKLVHL--------PLSAFN 2053 (2612)
Q Consensus 1985 A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~al~~L~~il~~~~~~vlp~Lip~L~~~--------~~~~~~ 2053 (2612)
++++++.+.+..|...++..+|.+.+.+.++. ....+.+.+.+++...+.......+|..... .+....
T Consensus 435 aarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~ 514 (569)
T KOG1242|consen 435 AARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGV 514 (569)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCe
Confidence 99999999999999888999999999886543 2356677777777543333333333322210 111111
Q ss_pred HHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000051 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 2097 (2612)
Q Consensus 2054 ~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~a 2097 (2612)
...+..+....|..+.+|+..+++.+.+.+.+.++..+..+.++
T Consensus 515 ~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 515 IWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred eehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 22333344456777889999999999998888777776665544
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.3e-17 Score=198.68 Aligned_cols=665 Identities=14% Similarity=0.197 Sum_probs=422.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH----
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF---- 1694 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~-g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l---- 1694 (2612)
+-....+.|.++.|..-..|+..++.++..- +...+++++..+.....++.+...++.+...++..+....++.+
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 4455667888999999999999999999843 33467888888887777777777888888889999888877644
Q ss_pred HhHhHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhh--hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh
Q 000051 1695 EHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2612)
Q Consensus 1695 ~~llp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p--~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~ 1770 (2612)
..++-.+..... .++..+|-.++.++..-.....+.|.. -...++.........+++++..++..++..++..|-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~ 254 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK 254 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 334445555443 357789988888877644444433321 1233666666677778889999999999888765432
Q ss_pred c---hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHH
Q 000051 1771 T---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2612)
Q Consensus 1771 ~---~i~~-llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl 1846 (2612)
. +.+. +.....+++.+.+.++...+++.-..+... + ...+.....+
T Consensus 255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE--------------e----------------id~~~e~~~~ 304 (858)
T COG5215 255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE--------------E----------------IDGEMEDKYL 304 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--------------H----------------hhhHHHHhhc
Confidence 2 1111 222233444455555554444443333210 0 0000000000
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhcC---hhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchhh
Q 000051 1847 AALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGERV 1920 (2612)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~~---~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~~ 1920 (2612)
.... +.+. .......+|.++..+.+.=. +.+|.....|..||.-+.+..|+.+
T Consensus 305 -------pe~p--------------~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i 363 (858)
T COG5215 305 -------PEVP--------------AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKI 363 (858)
T ss_pred -------ccCc--------------hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHh
Confidence 0000 0000 01234456666666554322 3468889999999999999999999
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~ 2000 (2612)
+..++.++.+.+++++|.-|..+..++|.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+.+++...
T Consensus 364 ~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~- 442 (858)
T COG5215 364 MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI- 442 (858)
T ss_pred HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-
Confidence 8889999999999999999999999999998876667788899999999999999999999999999999997764321
Q ss_pred hhhh--HHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCc-chhHHHHHH----HHHHHh---CCChhh
Q 000051 2001 IDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-SAFNAHALG----ALAEVA---GPGLNF 2070 (2612)
Q Consensus 2001 ~~~i--lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~-~~~~~~al~----~La~~~---g~~l~~ 2070 (2612)
+++- ++... ...+.+ +.+.|. ......+.- -++++. .+-+.+
T Consensus 443 i~p~~Hl~~~v---------sa~liG-------------------l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 443 ISPCGHLVLEV---------SASLIG-------------------LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred cCccccccHHH---------HHHHhh-------------------hhccchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 1110 01000 011111 111221 111112222 233322 233566
Q ss_pred hHhhHHHHHHHhc--CCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2071 HLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2071 ~l~~il~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+...|+..|+..- ...+...|..+..+++.++.-..+ .+.+++..+.....
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d-~V~~~~a~~~~~~~-------------------------- 547 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD-AVSDILAGFYDYTS-------------------------- 547 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHH--------------------------
Confidence 6677777776643 344455676777777766653322 11111111111100
Q ss_pred ccHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCC
Q 000051 2149 DEAPNMISTLIVLLSDS----DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP 2224 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~----d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p 2224 (2612)
..+.+.+..+-..+.-. .++++.+-+..|..++.+.+.+. .
T Consensus 548 ~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i-----------------------------------e 592 (858)
T COG5215 548 KKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI-----------------------------------E 592 (858)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------------------------------c
Confidence 00111111111111111 12344444444444444333211 0
Q ss_pred cCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhc
Q 000051 2225 KALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKG 2303 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~ 2303 (2612)
..-..+|..|++.+.+. ..........+|+.+....+ +.|..|++.+++-|.+.++. .+..+...+...+|.|.+.+
T Consensus 593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl 670 (858)
T COG5215 593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHh
Confidence 11123566666666654 33445667888899888887 78999999999999999965 47779999999999999999
Q ss_pred CCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC-------C--------HHH
Q 000051 2304 GIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS-------D--------AGI 2365 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~Ll~~l~~~-------d--------~~v 2365 (2612)
+.++.+|...++..++++++++ +++++.....++|.+ ..++.++.+|+..++..++.. + ..+
T Consensus 671 ~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~ 750 (858)
T COG5215 671 GTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNA 750 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHH
Confidence 9999999999999999999997 899999999999999 456788899998887666431 1 234
Q ss_pred HHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhCChhHHH
Q 000051 2366 REAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLA 2428 (2612)
Q Consensus 2366 r~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~Lg~L~~~~~~~~~~ 2428 (2612)
+..+..|+-.+........ ..||.-+|+..+-....|++ +...+++..++|.|+..+|..++.
T Consensus 751 ~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk 817 (858)
T COG5215 751 VQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELK 817 (858)
T ss_pred HHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchh
Confidence 4555556555555444322 24888889988887777763 455578899999999999987544
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=4.2e-18 Score=203.77 Aligned_cols=666 Identities=16% Similarity=0.167 Sum_probs=436.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCcc-hhhhhHHHHHH-HhccCCCChHHhhhHHhHHHHHHHHHhhhhccC-CcchHhH
Q 000051 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAV 1301 (2612)
Q Consensus 1225 l~d~~~~VR~~~~~a~~~~i~~~g~~-~~~~Llp~~~~-~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~-~~~~~~i 1301 (2612)
..+.+..-|...++.+..-...+|.. ..+.++|++.. .|+ |.-|+.++.++.++--.++.. .|++..|
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeE
Confidence 35667778888888877666667765 46778887543 222 334666776776666555433 4666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000051 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2612)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2612)
+-..-..+-+++..+|...-+.+..++...+-. ..+..+-..+ ++.|.-+|...+.+.+.++..+|.. .+.+
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llp 319 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLP 319 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHH
Confidence 655566777788777776666666666544321 1111111111 2334457888899999999988875 4678
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---Hh
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KL 1458 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~ 1458 (2612)
+|...+.++++|..|+.++.+...+++-+|...-+|+..++..+-.++.|.+..||-.++.++..+++...++++ ..
T Consensus 320 fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 320 FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 898889988899999999999999999999989999999999999999999999999999999999998888864 67
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhh----CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC-Ch
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC----APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 1533 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~----~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~ 1533 (2612)
++.+|.++.....-.. -..+|.++.+. .|+...-+-...+..++..++.++.+....-........++-. .|
T Consensus 400 vl~pLw~g~~~hrgk~---l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp 476 (975)
T COG5181 400 VLCPLWEGASQHRGKE---LVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTP 476 (975)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCH
Confidence 7777777654321111 12233344332 2333222223444455555555555444333322222221111 11
Q ss_pred h--HhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC
Q 000051 1534 E--IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2612)
Q Consensus 1534 ~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~ 1611 (2612)
+ .+.+.|.++... +.-|.| .+.++.++-..+..+ +++..++
T Consensus 477 ~~lr~~v~pefF~~f----w~rr~A----------------------------~dr~~~k~v~~ttvi---lAk~~g~-- 519 (975)
T COG5181 477 WKLRDQVSPEFFSPF----WRRRSA----------------------------GDRRSYKQVVLTTVI---LAKMGGD-- 519 (975)
T ss_pred HHHHHhhcHHhhchH----HHhhhc----------------------------ccccccceeehhHHH---HHHHcCC--
Confidence 1 122333322211 000000 000111111111112 2232233
Q ss_pred cchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000051 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2612)
Q Consensus 1612 ~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2612)
+.+...+.+.+.|+..-.|..++.+...+...+|..-+ ..++..++..++.++.. + .-...|++.+.
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~ 591 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVL 591 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEeccccee
Confidence 23667777778888888899999998888888775433 34555555555544322 1 11123344443
Q ss_pred HH---hChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcCCCChhHHHHHHHHHH
Q 000051 1687 AA---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1687 ~~---~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
.. .|+.++..++..++..++++.+.+|+.+..+.+.++..+...= ..-+.++--.++..+..+.++|--..+.|+.
T Consensus 592 vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 592 VSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred eehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 33 3455778889999999999999999999999888887654210 1334555566788899999999888888888
Q ss_pred HHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhC
Q 000051 1763 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2612)
Q Consensus 1763 ~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg 1838 (2612)
.+....+-. .+..++|.+.-.+.+++.++....+.++|.+...-+ + ..|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p--------------e-------------yi~ 724 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP--------------E-------------YIG 724 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc--------------c-------------cCC
Confidence 887665443 456688888888888999999999999998753311 1 112
Q ss_pred hhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000051 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2612)
Q Consensus 1839 ~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~ 1918 (2612)
...+-++.-.|...+...+.++|++|...++.+...-+. ..++..+++.|+..+...|....-+++-..+.+|+
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 222223333344445667889999999999999886553 23455666777777777888888888888887776
Q ss_pred hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 000051 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
- .++|.+..-...|+.+|++|++.+++-+.+..+. .-.+|+-.+.|.+..++.|.|+.-|..|...+..+
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~-~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ-ASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH-HHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 4 5677788777889999999999999988777664 45678899999999999999999999887766554
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=5.5e-18 Score=202.77 Aligned_cols=749 Identities=15% Similarity=0.202 Sum_probs=479.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
..++..+..|..+...+..=...+.+.. +++++|.+++. |+++ .|+-.+.++..+.+...+...++..+|+-.+-
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDq---erhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQ---ERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhh---hhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 4567777888887777666555565554 48899988774 5543 46777888888888766666666666665556
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH----HHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~----al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
.++-|.++.+|....+.+.+++...+=. .++..+-.-+.+.++++|+ +...++ ++-..+.+.|.+
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~vva--------~algv~~llpfl 321 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGVVA--------DALGVEELLPFL 321 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHHHH--------HhhCcHHHHHHH
Confidence 6788999999988888888887765411 1111111122334556663 222222 122345678888
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC---CCchh
Q 000051 1582 HRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPD 1657 (2612)
Q Consensus 1582 ~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ 1657 (2612)
.....++ +|+-|..+..+...+|...+. ...+|+..++..+.+++.|....||..++.+++.+++..|+ +.|+.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 8887776 999999999999999988765 67889999999999999999999999999999999998776 36788
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH----HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc-hh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQ 1732 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~-f~ 1732 (2612)
++..|.+....+.+. +-.....+.|-++.-+.+++. .+.+..+...+++++.+.+...+. +...|...|.. -.
T Consensus 400 vl~pLw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~-v~~~C~~v~~~tp~ 477 (975)
T COG5181 400 VLCPLWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV-VERICDKVGTDTPW 477 (975)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH-HHHHHhccCCCCHH
Confidence 888887776655432 222333444555555555544 456667777788888877765543 44455544432 12
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHH---------HHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAAL---------GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al---------~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
-+..++.|.+++... .|..|. .+-..+.+..|. +.+...+.+...|+....|.-.+.+....+
T Consensus 478 ~lr~~v~pefF~~fw-----~rr~A~dr~~~k~v~~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 478 KLRDQVSPEFFSPFW-----RRRSAGDRRSYKQVVLTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred HHHHhhcHHhhchHH-----HhhhcccccccceeehhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHH
Confidence 234556666655432 121221 111112222222 223334445556666556655555555544
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKE 1881 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~ 1881 (2612)
..++ ..+ -| ..+. .+++..++... +|....+ .+.+++++.....--.++
T Consensus 550 ~~lg-~~~-------~d----------Erle--------erl~d~il~Afqeq~~t~~~---il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 550 SRLG-RLG-------FD----------ERLE--------ERLYDSILNAFQEQDTTVGL---ILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred Hhcc-ccc-------cc----------HHHH--------HHHHHHHHHHHHhccccccE---EEecccceeeehhhccCc
Confidence 3321 100 00 0011 11222222222 1211111 111122222222223358
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---hchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh
Q 000051 1882 IMPVLMNTLISSLASSSSERRQVAGRALGELVRK---LGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957 (2612)
Q Consensus 1882 ~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~---~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~ 1957 (2612)
|++.++..+++.|.++.+++|..|+..++.++.. +|+. .+..+-.+|.+.+....+++--..+.++..|...++-.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 8999999999999999999999999988877654 4543 57777788888999999999888888888887776666
Q ss_pred hHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-hhhhhHH---HHHHhccCCCcchHHHHHHHHHhhhcc
Q 000051 1958 QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVP---TLLHALEDDQTSDTALDGLKQILSVRT 2033 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-~~~~ilp---~Ll~~L~~~~~~~~al~~L~~il~~~~ 2033 (2612)
.+.+-...++|.+...|.+.+..|..+....++.++...... ...+... .|++.|.+-.
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n----------------- 743 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN----------------- 743 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh-----------------
Confidence 666777888899989998999999999998899887753321 1112111 1111111100
Q ss_pred cccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHH
Q 000051 2034 TAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113 (2612)
Q Consensus 2034 ~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~l 2113 (2612)
..+.-.+...+|.+++..|+ ..++..|++.|+..+...|....-+++.+...++ .-.+
T Consensus 744 -------------KeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg---pfsV 801 (975)
T COG5181 744 -------------KEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG---PFSV 801 (975)
T ss_pred -------------HHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC---chhh
Confidence 11222456789999998887 3788889999987777777766666666655433 4578
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2114 l~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+|.|+.-...++..+++..+.++..+|+..+..-.+|+-.+.+.|-..+.|.|+.-|+.|...+..+.-+++....+...
T Consensus 802 lP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~ 881 (975)
T COG5181 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAA 881 (975)
T ss_pred HHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHH
Confidence 89999999999999999999999999999988888899999999999999999998988887777766544322111111
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT 2273 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~ 2273 (2612)
-.++..+.-.+...+|.+....-+|+..+....|...+-.|+.+
T Consensus 882 ----------------------------------IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~q-- 925 (975)
T COG5181 882 ----------------------------------IHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQ-- 925 (975)
T ss_pred ----------------------------------HHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHH--
Confidence 11233333344556677777777788888888876666666443
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH
Q 000051 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 2312 (2612)
Q Consensus 2274 ~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp 2312 (2612)
.|-.. +..||..-...+..+-......+.||.|
T Consensus 926 -----GLFHP-s~~VRk~ywtvyn~myv~~~damvp~yp 958 (975)
T COG5181 926 -----GLFHP-SSTVRKRYWTVYNIMYVFDSDAMVPCYP 958 (975)
T ss_pred -----hccCc-hHHHHHHHHHHHhhhhhccccccccccc
Confidence 22222 4556665444444443333344555543
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.81 E-value=6.5e-17 Score=212.29 Aligned_cols=558 Identities=21% Similarity=0.252 Sum_probs=402.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
.++.+.|.....-+..+....|.... ...+++++.+.+ ++ +..+...+..-++.+....| ...|...++|.+...
T Consensus 93 ~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 93 NTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELL 167 (759)
T ss_pred chhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhh
Confidence 34567788888888888888887665 347999999998 54 46666666665665554433 123344566666667
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh-HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhh
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTE 1506 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~-r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~ 1506 (2612)
..+....||+.+.+.+..+...++.......+-+++..+...+|+. |..+|.+++...-..+ +.+.. ++-|....
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~ 244 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQS 244 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHh
Confidence 7788889999999999999998888877666666777777778876 4456666666655444 33333 44455667
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcCChhH-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhh
Q 000051 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2612)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l 1585 (2612)
+++|..+.||.++.+-++.++..+.+... ..++|.+.....|
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D------------------------------------- 287 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD------------------------------------- 287 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc-------------------------------------
Confidence 88999999999999999999988764322 3344444444444
Q ss_pred cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHH
Q 000051 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLD 1664 (2612)
Q Consensus 1586 ~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~~~ll~~L~~ 1664 (2612)
....+|..|...+.++...+..+. +....+.+.+.+...|++|.+|.........+...+|++. .....+....
T Consensus 288 --dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 362 (759)
T KOG0211|consen 288 --DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSN 362 (759)
T ss_pred --chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHH
Confidence 444566666666666666654321 4455688888899999999999999999999999998863 3455666666
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHH
Q 000051 1665 ALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2612)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ii 1739 (2612)
.++... ...|...+.-..++...+..+ ..+.++|.+...+.+.+.++|.........+...+|. ..-+....
T Consensus 363 l~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~ll 439 (759)
T KOG0211|consen 363 LLKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELL 439 (759)
T ss_pred Hhcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccC
Confidence 665443 435555555555555544421 2356778888889999999999888877777777773 34566788
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHHh---hhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000051 1740 PAILDGLADENESVRDAALGAGHVLVEHY---ATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2612)
Q Consensus 1740 p~ll~~L~d~~~~VR~~Al~al~~lv~~~---~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2612)
|..+..++|+...||......+....... |.. ..+.++|.+.+...|.+||+|.+.++.+..++.+
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---------- 509 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---------- 509 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh----------
Confidence 99999999999999988875554333322 222 2345888888888888999999999888877533
Q ss_pred cCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh
Q 000051 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2612)
Q Consensus 1816 ~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~-~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L 1894 (2612)
+|.+++++.+..++.. +.|....+|++|...+..++..++. .-....+++.++...
T Consensus 510 ---------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 510 ---------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMD 566 (759)
T ss_pred ---------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHh
Confidence 2223333334444433 6788889999999999999987772 223445556666666
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHH
Q 000051 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2612)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2612)
.++++..|.+...++..++..+|.. ....++|.+..+..|+.++||.+++..+..++......... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 7778999999999999999999987 57899999999999999999999999999987766554433 4566666666
Q ss_pred hcCCcHHHHHHHHHHHHHHHHH
Q 000051 1974 LCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
..|++.+||..|..+++.+...
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHH
Confidence 6799999999999999887544
No 23
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.64 E-value=4.4e-13 Score=176.73 Aligned_cols=530 Identities=18% Similarity=0.224 Sum_probs=379.3
Q ss_pred hhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCC-CCHHHHHHHHhhhHHhHhh
Q 000051 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQS 1330 (2612)
Q Consensus 1252 ~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~-~~~~Vq~~~~~~L~~lv~~ 1330 (2612)
...++|.+.+... ..+++.+.+..-+|.+..+. .-|.+..++...++.+.. ....||..+++++......
T Consensus 119 r~~lipf~~e~~~-------~~dev~~~~a~~~~~~~~~v--~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAED-------DEDEVLLDLAEQLGTFLPDV--GGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhcc-------chhHHHHHHHHHhcccchhc--cchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888887762 24566666655666555442 123444444334444433 3446899999988777665
Q ss_pred hcchh-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000051 1331 MQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 1409 (2612)
Q Consensus 1331 ~~~~~-~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~ 1409 (2612)
..+.. .+.+-.++..+...+....|..++...+..........++ ..+.+...+..++. ++.+|.++..-++.++..
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAKV 267 (759)
T ss_pred cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHHH
Confidence 54432 3555567777766632244555556666666666555554 36777777888887 799999999999999988
Q ss_pred hcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1410 ~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
.+. ..-...++|.......|....||.+|..++..++..+... ..+.+.+.+++..++..|+++.........+..
T Consensus 268 ~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 268 LES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred HHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 875 3334467888888889999999999999999999877655 458899999999999999999877766655554
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hh--HhhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2612)
....+ ..-+..++.....++|...++|.++..-.+.+...... +. .+.++|.+...+.|.+.++|.+....+.
T Consensus 346 ~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 346 AVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVIT 423 (759)
T ss_pred Hhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccc
Confidence 32221 22356678888899999999999999888888876652 22 2567899999999999998855432211
Q ss_pred --ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHH
Q 000051 1563 --TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2612)
Q Consensus 1563 --~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~ 1640 (2612)
..... .+.....+.|.+...++|..+.+|....+.+..+-.. .+..-+..+.+..+|.+..+-.|..|.+|.+..
T Consensus 424 ~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v-~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 424 GLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV-NDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred ccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhc-cCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 00111 2334556788888889999999999888766544333 333345567778999999998899999999999
Q ss_pred HHHHHHHhhhCCCCchhhHHH-HHHHhccCCCHHHHHHHHHHHHHHHHHhChhh-HHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1641 RAIGSLIRGMGEENFPDLVSW-LLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1641 ~aL~~L~~~~g~~~~~~ll~~-L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~-l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
..+..++...|..++++.+-. ++..+.+ ..+..|.+++..+..++..+|.+. ...++|.++....++++.+|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 999999998886655544333 3333333 335688999999999999999542 3678888888888888999999999
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhh-hHHHHhhccCCCchHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVE 1797 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~-llp~L~~~l~d~~w~vR~~a~~ 1797 (2612)
++..++..+|..+ +-..++|.+.....|..++||-.+++.+..++..+.....+. +.|.+.....|.+-.+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999854 457799999999999999999999999999988776655443 6666665555554444444445
Q ss_pred HHHHH
Q 000051 1798 LLGDL 1802 (2612)
Q Consensus 1798 ll~~l 1802 (2612)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 44443
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.2e-12 Score=158.14 Aligned_cols=424 Identities=18% Similarity=0.239 Sum_probs=308.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
+...++|+--+-|++|+.-+..++..+-.. .+..++..+... ..+.+...|+|++..+.+++-+-...-..++..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345667777777888877777777654332 456777755543 345566667798888887776544333348999
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hHhhHHHHHHhhcCCCChhHHH---HHHHHHhcccccc-CChh
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNT-VDAP 1572 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ivp~Ll~~l~d~~~~~r~---al~~L~~~~~~~~-i~~~ 1572 (2612)
++|.++.+++|++..||-.||.++-+++++.+.. ++..++..+.+...|++..+|. -++.+++. .+.. ...-
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikd-IVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKD-IVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHH-hcccccccc
Confidence 9999999999999999999999999999988753 5688999999999999888874 34555542 2222 2256
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+++.++|.+...+...++.+|.....++..+-.. + .-++..|++.+++++.+.+.|+.++||..+-.+++.+...+.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~- 240 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR- 240 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-
Confidence 7889999999999989999999999999887664 2 246889999999999999999999999999888887765432
Q ss_pred CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1653 ~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
++.... ..++..+.+...+.++++.++..++.++..+....|+++.
T Consensus 241 ---------------s~P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 241 ---------------SSPSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred ---------------cCcccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 111110 1233445566667788889999999999999999999999
Q ss_pred hhHHhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHHhhhc----hhh--hhHHHHhhccCCCchHHHHHHHHHHHHHHHH
Q 000051 1733 NYLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~-~VR~~Al~al~~lv~~~~~~----~i~--~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~ 1805 (2612)
+|+..++..++.++.|.++ .+++.+...-..+...++.. .++ .++..+.+.+.++....|.++++.+-.+...
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999877 47776655443444333322 133 5888888999999999999999999887655
Q ss_pred hcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChh-hHHHHHH
Q 000051 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMP 1884 (2612)
Q Consensus 1806 ~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~ 1884 (2612)
.+|.. . -+.+.++..+...++|.+..|-..++.++..++..... .+.+
T Consensus 367 ~p~ql-----------------------~-----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~--- 415 (675)
T KOG0212|consen 367 APGQL-----------------------L-----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRK--- 415 (675)
T ss_pred Ccchh-----------------------h-----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHH---
Confidence 44221 1 12345666777788999999999999999999874322 2333
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000051 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2612)
Q Consensus 1885 ~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~ 1918 (2612)
++..++.++.....-.+.-+.-.+..+|..+.+
T Consensus 416 -fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 416 -FLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred -HHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 333444445544444455555566666655543
No 25
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.3e-08 Score=130.83 Aligned_cols=627 Identities=17% Similarity=0.200 Sum_probs=337.1
Q ss_pred CcchHhHHHHHHHhcCCCCHHHH--HHHHhhhHHhHhhhcch--------hHHHHHHHHHHhhcC-----CChHHHHHHH
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQ--RAVSSCLSPLMQSMQDE--------APTLVSRLLDQLMKS-----DKYGERRGAA 1359 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq--~~~~~~L~~lv~~~~~~--------~~~li~~ll~~L~~~-----~~~~~R~~Aa 1359 (2612)
||.++.+++.+...+.......+ ..+.+-+..+....+.+ .-..++.+++.|..+ .+|..|..-.
T Consensus 67 Dp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilL 146 (1133)
T KOG1943|consen 67 DPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILL 146 (1133)
T ss_pred cchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 56666777776666655443333 23334444443332211 123556666666522 2578888888
Q ss_pred HHHHHHHhhh-Ccchhh------h----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1360 FGLAGVVKGF-GISSLK------K----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1360 ~~L~~l~~~l-g~~~l~------~----~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
.-|.-++... ..+.++ + ..++.+...++... +..|..|..+++.+.... ...+++...+..++.+
T Consensus 147 lWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~--~~~r~~aalllsk~~sR~--D~~~~~~~Fl~~~l~~ 222 (1133)
T KOG1943|consen 147 LWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS--GILRRSAALLLSKLFSRT--DVKDLLLSFLDWLLDC 222 (1133)
T ss_pred HHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHcccc--cHHHHHHHHHHHhhcc
Confidence 7777777542 112111 1 13445555555554 355666666555544221 1223344444444444
Q ss_pred cCCCCHH--HHHHHHHHHHHHHHhh---------------------cHH---hHHhHHHHHHhhh-------cCCChhhH
Q 000051 1429 FSDQVVA--VREAAECAARAMMSQL---------------------SAQ---GVKLVLPSLLKGL-------EDKAWRTK 1475 (2612)
Q Consensus 1429 l~D~~~~--VR~aa~~al~~i~~~l---------------------~~~---~v~~ilp~Ll~~L-------~~~~w~~r 1475 (2612)
-.+..++ +......++..+.... +.+ ...++++.+++.+ .+.+|+..
T Consensus 223 ~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~ 302 (1133)
T KOG1943|consen 223 PSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYS 302 (1133)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhh
Confidence 4443333 1122222222222211 111 2355677777743 25689888
Q ss_pred HHHHHHHHHHHhh--Cc-------------hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1476 QSSVQLLGAMAYC--AP-------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1476 ~~a~~~L~~ia~~--~p-------------~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
++.-.+.+++-.. +| +.....+..++..|+..++|.+..||..|++.++.+....+-.-.+..+.
T Consensus 303 rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~ 382 (1133)
T KOG1943|consen 303 RGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIG 382 (1133)
T ss_pred cccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHH
Confidence 7766555543321 11 11223345677788889999999999999999999998876322355555
Q ss_pred HHHhhcC---CCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC--------CCHHHHHHHHHHHHHHhhccCC
Q 000051 1541 TLLMGLT---DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE--------RSAETKKKAAQIVGNMCSLVTE 1609 (2612)
Q Consensus 1541 ~Ll~~l~---d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d--------~s~~vr~~a~~~l~~l~~~~~~ 1609 (2612)
..++.+. ++..-. .++-++......+-+....+..++|.+.+++.- ....+|.+||-++-.+++. -+
T Consensus 383 svid~~~p~e~~~aWH-gacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys 460 (1133)
T KOG1943|consen 383 SVIDLFNPAEDDSAWH-GACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YS 460 (1133)
T ss_pred HHHHhcCcCCchhHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CC
Confidence 5555332 111111 222223221222333445677899999988742 3567999999999999886 46
Q ss_pred CCcchhhHhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000051 1610 PKDMIPYIGLLLPEVK-KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1610 ~~~l~~~l~~ll~~L~-~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2612)
+.++.|++..+.+.+. ..+-|+.-..|.+|..|+-..+...|. ++.=++.+ .. .+.-+...|......+...++.
T Consensus 461 ~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n--~p~Gi~Li-s~-~dy~sV~~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 461 PSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN--FPHGISLI-ST-IDYFSVTNRSNCYLDLCVSIAE 536 (1133)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC--CCCchhhh-hh-cchhhhhhhhhHHHHHhHHHHh
Confidence 7889999997777665 567799999999999998877665443 22111111 10 1111223444444445554444
Q ss_pred hChhhHHhHhHHHHHh-ccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000051 1689 LGTVYFEHILPDIIRN-CSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1689 ~g~~~l~~llp~l~~~-~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~ 1767 (2612)
+. .+.+.++..++.. +.+-+..+|+.+..++..+....++.+..| .+|+++....-.+...|..+.-+++.++..
T Consensus 537 ~~-~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~---~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 537 FS-GYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY---VLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred hh-hHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc---chhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 32 2345555555544 677889999999999999888877755533 677777776666777888777776665533
Q ss_pred hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHH
Q 000051 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLA 1847 (2612)
Q Consensus 1768 ~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~ 1847 (2612)
+-.- .-+.+.+ ...|.+ . ...+++
T Consensus 613 ~~~l--~~~~~~l--------~e~~i~------~----------------------------------------l~~ii~ 636 (1133)
T KOG1943|consen 613 LRKL--EPVIKGL--------DENRIA------G----------------------------------------LLSIIP 636 (1133)
T ss_pred hhhh--hhhhhhh--------HHHHhh------h----------------------------------------hhhhcc
Confidence 2110 0000000 000000 0 001111
Q ss_pred HHHHHccC--CCHHHHHHHHHHHHHHHhcChhhHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--chhhhh
Q 000051 1848 ALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKL--GERVLP 1922 (2612)
Q Consensus 1848 ~L~~~~~D--~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~-ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~--~~~~l~ 1922 (2612)
.++...-+ .....|.+....+..+..+.++.+.+++-. ....+.+.+.+++ .+|..|..++++++... ++....
T Consensus 637 ~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~ 715 (1133)
T KOG1943|consen 637 PICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEE 715 (1133)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhh
Confidence 11111101 013456666666666665555444443333 3334444455566 89999999999998654 222111
Q ss_pred -hHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH-HHHHHHh-cCCcHHHHHHHHHHHHHHHHHh
Q 000051 1923 -SIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELI-PTIRTAL-CDSILEVRESAGLAFSTLFKSA 1996 (2612)
Q Consensus 1923 -~llp~L~~~L~d~-~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll-~~l~~~L-~D~d~~Vr~~A~~al~~l~~~~ 1996 (2612)
.++......+.+. +..+|++...+++.+ ....+.-++.+.+ ..+.... .|..++-|.....++..+++..
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~l----p~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~ 789 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVL----PSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTV 789 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccC----cHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHH
Confidence 2434444445554 677888887777654 2222222222222 2222221 1224555665555555554443
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.4e-11 Score=148.98 Aligned_cols=419 Identities=19% Similarity=0.227 Sum_probs=306.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHh
Q 000051 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEH 1696 (2612)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~ 1696 (2612)
+.+.+.|+..+-|++|+--+..+++.+-.. .+..++..+............|.|...+++.+.-++|.+ +.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 455667888889999999999998865433 355666666555544444446778888888888888876 4789
Q ss_pred HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhh
Q 000051 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2612)
Q Consensus 1697 llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~l 1776 (2612)
++|.++..+++++..+|-.++..+..+++...+++-+|++.+...+.+..+|.+..||.+|- -+..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdR------------- 150 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDR------------- 150 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHH-------------
Confidence 99999999999999999999999999999999999999999999999999999988886651 1111
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCC
Q 000051 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2612)
Q Consensus 1777 lp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~ 1856 (2612)
++..+. .+++..++ .+.+++.+-....+.
T Consensus 151 -------------------------LikdIV----------te~~~tFs----------------L~~~ipLL~eriy~~ 179 (675)
T KOG0212|consen 151 -------------------------LIKDIV----------TESASTFS----------------LPEFIPLLRERIYVI 179 (675)
T ss_pred -------------------------HHHHhc----------cccccccC----------------HHHHHHHHHHHHhcC
Confidence 111110 00010111 122333333345667
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHHHhhhc
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGL 1932 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~L 1932 (2612)
+..+|+.-+.-+..+-...+..+-.|+|.+++.+++.|+|++.++|..+-.+++++....... -.+.+++++...+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l 259 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL 259 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc
Confidence 888899888888877777778888999999999999999999999999999999998776433 2578889999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhChhhh------hhhH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQAI------DEIV 2005 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~-~Vr~~A~~al~~l~~~~g~~~~------~~il 2005 (2612)
.++++.++..+..|+-+.+. .++.++..++..++..+.+++.|.++ ..++.|...-+.+...++.... ..++
T Consensus 260 ~ss~~~iq~~al~Wi~efV~-i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii 338 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVK-IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSII 338 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhc-CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHH
Confidence 99999999999999999865 45567778899999999999988776 5777776655555444433211 1233
Q ss_pred HHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHH---HHHHhCCChhhhHhhHHHHHHHh
Q 000051 2006 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGA---LAEVAGPGLNFHLGTILPALLSA 2082 (2612)
Q Consensus 2006 p~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~---La~~~g~~l~~~l~~il~~Ll~~ 2082 (2612)
..+...+.++. . ..+..++.. |-..++..+.-|...+.+.|+..
T Consensus 339 ~vl~~~l~~~~--------------------------------~-~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 339 EVLTKYLSDDR--------------------------------E-ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHhhcch--------------------------------H-HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHh
Confidence 33333332211 0 112233333 33446778888999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000051 2083 MGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2612)
Q Consensus 2083 L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~ 2141 (2612)
|.|.+++|-..+...+..++.+-...+...++..|++..+.+..-.+.-+...+..+|.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 99999999988998888888776666788888888888877655555555555555554
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=8e-08 Score=127.63 Aligned_cols=763 Identities=17% Similarity=0.162 Sum_probs=419.7
Q ss_pred HHHHHhhhhccC--CcchHhHHHHHHHhcC--CCCHHHHHHHHhhhHHhHhhhcchh------HHHHHHHHHHhhcCCCh
Q 000051 1283 FTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDEA------PTLVSRLLDQLMKSDKY 1352 (2612)
Q Consensus 1283 ~l~~La~~l~~~--~~~~~~i~~~L~~~L~--~~~~~Vq~~~~~~L~~lv~~~~~~~------~~li~~ll~~L~~~~~~ 1352 (2612)
++.-+-++.++. ..++.++...|...+. ..+..|...+..||..+++...... ...+..++....+ +..
T Consensus 74 LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~p 152 (1176)
T KOG1248|consen 74 LLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKP 152 (1176)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-Cch
Confidence 444444444331 3345666777777666 5677899999999999987743221 2233333333333 345
Q ss_pred HHHHHHHHHHHHHHhhhCcchhhh----hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1353 GERRGAAFGLAGVVKGFGISSLKK----YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~~~l~~----~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
..|..|..+++.++.+...-.... ..+..++...++....+......+..+..|-..+...-.+.+..+...++..
T Consensus 153 kvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i 232 (1176)
T KOG1248|consen 153 KVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNI 232 (1176)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Confidence 789999999999998643111100 0233334444443322222223333333333333333346788899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHH----hHHhHHHHHHhhhcC-CChhhHHHHHHH----HHHHHhhCchhhhhhhch
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLED-KAWRTKQSSVQL----LGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~----~v~~ilp~Ll~~L~~-~~w~~r~~a~~~----L~~ia~~~p~~l~~~L~~ 1499 (2612)
++..+..|+-.+.+++..++..-+.. ....++..+.+.--+ .+...-.+-+.+ ...++...++..-..++.
T Consensus 233 ~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~ 312 (1176)
T KOG1248|consen 233 TTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPR 312 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhh
Confidence 99999999999999999888754442 223344433332111 111111111112 222333334444445677
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+++.++.++...++++-.+|-+++..+.+.... +.+.++..
T Consensus 313 ~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~---------------------------------- 353 (1176)
T KOG1248|consen 313 LFSLFFTILESLIEELVQAASQSLKEILKESVT-----VIDALCSK---------------------------------- 353 (1176)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHH----------------------------------
Confidence 778777777788888888888888887753321 11111111
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll 1659 (2612)
.+..+++-+...+-..+.+++..+++.++. ...|++-..+..+-..=.+++..-+...-.|+|+-+.++|++.+-.++
T Consensus 354 ~~~~~l~~kf~~~~~~ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~l 431 (1176)
T KOG1248|consen 354 QLHSLLDYKFHAVWRFILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTIL 431 (1176)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHc
Confidence 112222223334555667777777776654 445665555555555445566666778889999999999998766666
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH----HhChhhH-HhHhHHHHHhc---------cCCChhhHhHHHHHHHHhhh
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLA----ALGTVYF-EHILPDIIRNC---------SHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~----~~g~~~l-~~llp~l~~~~---------~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
|.=+ ..+.....| ++ |--+++ +....++ +.++|-..+.- ++.....+.-..++|+-|+.
T Consensus 432 pLnl---~~~s~~~~R---sW-LLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~ 504 (1176)
T KOG1248|consen 432 PLNL---HAESLSFTR---SW-LLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPG 504 (1176)
T ss_pred chhc---cccccccch---hH-hHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChh
Confidence 6332 111111112 11 111111 1111122 44444433221 11122456667788888888
Q ss_pred hhc--cchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hhc-----------hhhhhHHHHhhccCC-----
Q 000051 1726 SLG--VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATT-----------SLPLLLPAVEDGIFN----- 1786 (2612)
Q Consensus 1726 ~~g--~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~~-----------~i~~llp~L~~~l~d----- 1786 (2612)
.|. .+...-+..+.|.+...+.... +.|.....+++.+++.- +.. ....++|.+.+.-..
T Consensus 505 FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~ 583 (1176)
T KOG1248|consen 505 FCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAG 583 (1176)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccc
Confidence 763 4555556777888877776654 89999999998888653 111 112244443322211
Q ss_pred -CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHH----H
Q 000051 1787 -DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV----R 1861 (2612)
Q Consensus 1787 -~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~V----R 1861 (2612)
+.-+.|..-++.+....++.+ +.+....+...+-....|.+..+ +
T Consensus 584 ~~~l~~~~~~L~~i~~~~~~~t------------------------------~~dv~~~l~~s~~e~as~~~~s~~~~~~ 633 (1176)
T KOG1248|consen 584 RKILASRSTVLEIIRVDYFTVT------------------------------PTDVVGSLKDSAGELASDLDESVASFKT 633 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhhcc------------------------------cHHHHHHHHHHHHhHhccchhhhhhHHH
Confidence 111122222222221111110 00000111111111112221122 2
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----chhhhhhHHHHHhhhcCCCC
Q 000051 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL-----GERVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~-----~~~~l~~llp~L~~~L~d~~ 1936 (2612)
..-++.+..++...+. ..+..+....-...++.+..++.-+.+.|.+++..- -......+...+...+++..
T Consensus 634 ~slLdl~~~~a~~~~e---~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~ 710 (1176)
T KOG1248|consen 634 LSLLDLLIALAPVQTE---SQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS 710 (1176)
T ss_pred HHHHHHHHhhhccccc---hhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence 2223333333332221 222222211112233457889999999999998761 11234566666677777777
Q ss_pred hhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-----HhChh----hhhhhHHH
Q 000051 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK-----SAGMQ----AIDEIVPT 2007 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~-----~~g~~----~~~~ilp~ 2007 (2612)
...|...+.++..++..++ .....+.+..++.+.-.+.+.+...|..|..++-.|.. ..|.. .++++++.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~-~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLS-AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 7788899999999888777 34445667777766666688889999998887766652 12211 22222222
Q ss_pred HHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-hhhhHhhHHHHHHHhcCCC
Q 000051 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-l~~~l~~il~~Ll~~L~~~ 2086 (2612)
+...+-.+... ..+...-+++.+..-.+.. -..++..++..+..++...
T Consensus 790 Isagl~gd~~~------------------------------~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 790 ISAGLVGDSTR------------------------------VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHhhhcccHHH------------------------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 22221111100 0000122333333222222 2367788888888889999
Q ss_pred CHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhccc-chhccHHHHHHHHH
Q 000051 2087 DMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL-YLVDEAPNMISTLI 2159 (2612)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~-~~~~~~~~il~~L~ 2159 (2612)
+++++..|+..+..++..+++ .+++.+|+.++.+..+....+|...-.++-.+++..+. ++..++|+....++
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL 917 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLL 917 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHH
Confidence 999999999999999988765 56778899999988888889999999999999887664 34455554444433
No 28
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.8e-07 Score=124.31 Aligned_cols=776 Identities=16% Similarity=0.144 Sum_probs=416.2
Q ss_pred CchhhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhChhhHH-----hHhHHHHHhccCCChhhHhHHHHHHHHhhhhh
Q 000051 1654 NFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFE-----HILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2612)
Q Consensus 1654 ~~~~ll~~L~~~L~-~~~~~~~R~~aa~~L~~i~~~~g~~~l~-----~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~ 1727 (2612)
.|.+++..+...+. +..+..++..+..||+.++..-+...|. ..+..++...-++.|.+|..+...+..+...-
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p 169 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGP 169 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCC
Confidence 35555555555554 2234457778888999998876665552 33445666667889999988888777665411
Q ss_pred ---ccchhhhHHhHHHHHHhhcCCCC-hhHHHHHHH---HHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1728 ---GVQFQNYLQQVLPAILDGLADEN-ESVRDAALG---AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1728 ---g~~f~p~l~~iip~ll~~L~d~~-~~VR~~Al~---al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
+..-.|-...+...++..+.-.. +..-...++ -++.++..++...++.+-..+...+...+-.++..+++++.
T Consensus 170 ~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~ 249 (1176)
T KOG1248|consen 170 PFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLH 249 (1176)
T ss_pred CCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 11112223333333443333211 111122222 23333334455566666666667777777778888888888
Q ss_pred HHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc---cCCCHHHH--HHHHHHHHHHHhcC
Q 000051 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLSVR--QAALHVWKTIVANT 1875 (2612)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~---~D~~~~VR--~aA~~~l~~l~~~~ 1875 (2612)
.+....++ ... .+....++..++... +|.-..+. ..-......++...
T Consensus 250 ~lf~~~~~---------------~l~------------a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q 302 (1176)
T KOG1248|consen 250 SLFKKHPT---------------ALA------------AELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQ 302 (1176)
T ss_pred HHHhcCCC---------------cch------------HHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhC
Confidence 87654221 000 111223444444332 22211110 00011111223334
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1876 ~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+..-....|.+++.++..+.+..+..-+.+.+++.++...... +.+.+-. .+..++.-+...+-..++..+..+...+
T Consensus 303 ~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~ 381 (1176)
T KOG1248|consen 303 EEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKC 381 (1176)
T ss_pred HHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHh
Confidence 4444566788888888888888888888888888877654322 1111111 2444454454455555556666666666
Q ss_pred ChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccc
Q 000051 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTT 2034 (2612)
Q Consensus 1955 ~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~ 2034 (2612)
|+ ...+++...+..+...=.+++..-+..--.++|.-....|+..+=.++|-=+. .+.. +
T Consensus 382 G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~---~~s~----------------~ 441 (1176)
T KOG1248|consen 382 GE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH---AESL----------------S 441 (1176)
T ss_pred hh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc---cccc----------------c
Confidence 64 33444444444444433344444444555677777788888766556664221 1110 0
Q ss_pred ccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHH
Q 000051 2035 AVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV 2114 (2612)
Q Consensus 2035 ~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll 2114 (2612)
..-..|+|.|.+. +.|..+.-|...|+|..++.... ...+.+.. ....-++.+.
T Consensus 442 ~~RsWLLPvLR~~---------------i~~A~La~F~~~ivpla~sl~~K-~~~l~~~~----------~~~~~~~tl~ 495 (1176)
T KOG1248|consen 442 FTRSWLLPVLRDY---------------IIGASLAFFTEYIVPLAMSLQLK-AKKLKEAG----------SQVSLYDTLV 495 (1176)
T ss_pred cchhHhHHHHHHh---------------hccCcHHHHHHHHHHHHHHHHHH-HHhhhhcc----------CcHHHHHHHH
Confidence 0001123333221 12555666666677665543210 00000000 0000112222
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHH
Q 000051 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2612)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~ 2194 (2612)
-+|.. +|..||+ .|.|...-++++.+.+...+.... +.|...+.+|..++.......
T Consensus 496 ~QLW~---------------LLP~FC~-~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~------ 552 (1176)
T KOG1248|consen 496 DQLWS---------------LLPGFCN-YPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSS------ 552 (1176)
T ss_pred HHHHH---------------hChhhhC-CCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcc------
Confidence 22222 2233443 355666656677777777665433 788888888888877642100
Q ss_pred HHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCC------HHHHHHHHHHHH-HHHHhcChhhhhh
Q 000051 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGS------AELREQAALGLG-ELIEVTSEQSLKE 2267 (2612)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~------~~~r~~aa~~L~-~li~~~~~~~l~p 2267 (2612)
+.-+... +. ..+...+||.+...-.+.. ...|....+.+. .++..++.
T Consensus 553 ---~a~e~~e-------------~~----s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~----- 607 (1176)
T KOG1248|consen 553 ---DAAENKE-------------VL----SNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPT----- 607 (1176)
T ss_pred ---hHHHHHH-------------HH----hhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccH-----
Confidence 0000000 00 0223345555554443322 233344444444 44444442
Q ss_pred chhhhhHHHHHHhcCC---CCHhHHHH-HHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 000051 2268 FVIPITGPLIRIIGDR---FPWQVKSA-ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2268 ~v~~i~~pLi~~l~~~---~~~~vk~~-al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~ 2343 (2612)
.+.+-|...+++. .+..++.. .+..|..+..-.+..-...+.++...+-...+..+..++..+...|+.++..
T Consensus 608 ---dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 608 ---DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred ---HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC
Confidence 1222222222211 11222221 1222222221111111122333332222233344889999999999999664
Q ss_pred -------cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2344 -------STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2344 -------~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
..+++.+...|.+.+++.+...|...+++|..++...+.....-....|.+.|... .+.++..|.++-+||-
T Consensus 685 ~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 685 PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLV 763 (1176)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHH
Confidence 23456666667777777777889999999999999877433334445566666655 7778899999999988
Q ss_pred HHH--hh---CC----hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChh
Q 000051 2417 IMS--QC---ME----DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFP 2487 (2612)
Q Consensus 2417 ~L~--~~---~~----~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ 2487 (2612)
.++ .. .+ .+.+.+++..+-..........+...+.++..++.+....+ +.++.+.+++.++..+.+.+++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l-d~~~l~~li~~V~~~L~s~sre 842 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL-DDETLEKLISMVCLYLASNSRE 842 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhcCCHH
Confidence 877 21 11 12344454444333222332222223667778877766544 6678899999999999999999
Q ss_pred HHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC-chhhhhhHhHH
Q 000051 2488 LREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN-PSAIMVHVALF 2558 (2612)
Q Consensus 2488 ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~-~~~v~~~l~~l 2558 (2612)
++.+|+..+..++......- -...+.++|+.+.....+....+|......+..+.+.. ++.+.++++..
T Consensus 843 I~kaAI~fikvlv~~~pe~~--l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee 912 (1176)
T KOG1248|consen 843 IAKAAIGFIKVLVYKFPEEC--LSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEE 912 (1176)
T ss_pred HHHHHHHHHHHHHHcCCHHH--HhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHH
Confidence 99999999888876653210 00245668888888888889999999999999999864 55566666543
No 29
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-07 Score=124.42 Aligned_cols=461 Identities=20% Similarity=0.219 Sum_probs=245.8
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh--chh
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GER 1919 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~-~~~R~~A~~aL~~lv~~~--~~~ 1919 (2612)
+.++..++..++|.+..||-.|++.++.+....|..+ ....+..++.++.--+ +..=..|+-+|+++...- -+.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3566777788899999999999999999999999644 4455555666554222 222235677777777541 233
Q ss_pred hhhhHHHHHhhhcCC--------CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH-HHhcCCcHHHHHHHHHHHH
Q 000051 1920 VLPSIIPILSRGLKD--------PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR-TALCDSILEVRESAGLAFS 1990 (2612)
Q Consensus 1920 ~l~~llp~L~~~L~d--------~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~-~~L~D~d~~Vr~~A~~al~ 1990 (2612)
.++.++|.+..++.- ....+|-++|+.+-.+....++..+.+++..+.+.+. .++=|++-.+|.+|..||.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 467888988887652 2356899999999888888888999999988888765 4667999999999887775
Q ss_pred HHHHHhChh-hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhC----
Q 000051 1991 TLFKSAGMQ-AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG---- 2065 (2612)
Q Consensus 1991 ~l~~~~g~~-~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g---- 2065 (2612)
. ++|.. .+ |.-++.... .+-.+++..+.+.+
T Consensus 497 E---~VGR~~n~------------------------------------p~Gi~Lis~-----~dy~sV~~rsNcy~~l~~ 532 (1133)
T KOG1943|consen 497 E---NVGRQGNF------------------------------------PHGISLIST-----IDYFSVTNRSNCYLDLCV 532 (1133)
T ss_pred H---HhccCCCC------------------------------------CCchhhhhh-----cchhhhhhhhhHHHHHhH
Confidence 4 34431 01 000000000 00111111111110
Q ss_pred --CChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhh-cCCCChhHHHHHHHHHHHHHHh
Q 000051 2066 --PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKN 2142 (2612)
Q Consensus 2066 --~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~-l~~~~~~vR~~A~~~L~~l~~~ 2142 (2612)
..+..|... +++.++.. +.+-|..+|..++++|..+...
T Consensus 533 ~ia~~~~y~~~--------------------------------------~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 533 SIAEFSGYREP--------------------------------------VFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHhhhhHHHH--------------------------------------HHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 012223333 33333333 3344455555555555554443
Q ss_pred cccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCC
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2612)
.+..+.. ..++.++......|...|.....+.+.++....+-. +.+...-.+. +
T Consensus 575 ~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~~~~~l~e~~------------------i---- 628 (1133)
T KOG1943|consen 575 EPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-PVIKGLDENR------------------I---- 628 (1133)
T ss_pred hHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-hhhhhhHHHH------------------h----
Confidence 3333322 123334444444555555555555555544332211 0000000000 0
Q ss_pred CCcCchhhHHHHHHHHhc-CC-HHHHHHHHHHHHHHHHhcChhh---hhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHH
Q 000051 2223 LPKALQPLLPIFLQGLIS-GS-AELREQAALGLGELIEVTSEQS---LKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2223 ~p~~l~~ilp~l~~~L~~-~~-~~~r~~aa~~L~~li~~~~~~~---l~p~v~~-i~~pLi~~l~~~~~~~vk~~al~~L 2296 (2612)
.++..++|.+...-.+ |. .-.|. ++...++...... +..++.. ....+...+.+ +..+|.++..++
T Consensus 629 --~~l~~ii~~~~~~~~~rg~~~lmr~----~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av 700 (1133)
T KOG1943|consen 629 --AGLLSIIPPICDRYFYRGQGTLMRQ----ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAV 700 (1133)
T ss_pred --hhhhhhccHHHHHHhccchHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHH
Confidence 0111122222211111 10 11122 2222332222111 1112211 11112223322 237899999999
Q ss_pred HHHHHhcCCCccCchH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHH--hccCChhHHHHHHH-HhhhcC-CHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLP-QLQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVDPLVGDLL-SSLQVS-DAGIREAIL 2370 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lp-qL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~--~~~~~~~~~l~~Ll-~~l~~~-d~~vr~~~l 2370 (2612)
+.++...-.. .+... .++...+..+.+. ++.+|.--..++|.+- .++.+....+-.++ ...... .++.|...+
T Consensus 701 ~~l~s~y~~~-d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V 779 (1133)
T KOG1943|consen 701 SDLVSTYVKA-DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNV 779 (1133)
T ss_pred HHHHHHHHhc-CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHH
Confidence 9988643111 11222 4777777888776 7899999999999872 23344444433222 222211 467888999
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC----C--C--HHHHHHHHHHHHHHHhhCC
Q 000051 2371 TALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH----D--D--DHVRVSAASILGIMSQCME 2423 (2612)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~----~--~--~~vr~~aa~~Lg~L~~~~~ 2423 (2612)
.|+..++...+...-.....++.+.|.+.++| . | ..||++|...+..+...++
T Consensus 780 ~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 780 KALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 99999988776322223344555555555543 2 2 4699999999998876655
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=1.2e-09 Score=149.68 Aligned_cols=468 Identities=16% Similarity=0.184 Sum_probs=316.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
....+.+.+.++ +...|..+-.++..+...-+ ....-+++.+.+-+.++++.+|-.|..++..+. +++-...
T Consensus 43 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~ 114 (526)
T PF01602_consen 43 LFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEP 114 (526)
T ss_dssp THHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhH
Confidence 344455666655 78888877776666554333 245567888888999999999988887777764 5666788
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC---hhH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i 1535 (2612)
++|.+.+.+.+++|.+|+.|+.++..+....|+..... +++.+.+++.|+++.|+.+|+.++..+ +.-.+ +.+
T Consensus 115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~ 190 (526)
T PF01602_consen 115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH
Confidence 89999999999999999999999999998888765432 688888899999999999999999988 21111 223
Q ss_pred hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
..+++.|.+.+.++++..+ ..++.+.. +. ....... ..+++.+...+.+.++.+...+...+..+...
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~-~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------ 261 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRR--YA-PMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------ 261 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTT--ST-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS------
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHh--cc-cCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc------
Confidence 5566666666677777665 45555442 11 1112222 45778888888877888888888877755431
Q ss_pred chhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh
Q 000051 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2612)
.+.+..+++.+..++.++++++|..+..++..++....+..+ . ....+..+..+++...|..+...+..++. .+
T Consensus 262 -~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~~ 335 (526)
T PF01602_consen 262 -PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN---ES 335 (526)
T ss_dssp -HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-----HH
T ss_pred -hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h-hhhhhheecCCCChhHHHHHHHHHhhccc---cc
Confidence 126677899999999999999999999999998876522212 1 11223355545556678777776665554 44
Q ss_pred hHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1693 YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1693 ~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
....+++.+.+.+.+ .+..+|..++..++.++..+++.+..|+.. +++.+....+.+...+...+..++...+..
T Consensus 336 n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~----l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 336 NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDT----LLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHH----HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHH----HHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 556788888888744 477899999999999998887765555444 444444444455444444444443332111
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~ 1851 (2612)
+...+..++.
T Consensus 412 ----------------------------------------------------------------------~~~~l~~L~~ 421 (526)
T PF01602_consen 412 ----------------------------------------------------------------------REKILKKLIE 421 (526)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------hHHHHHHHHH
Confidence 0111112222
Q ss_pred Hcc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHh
Q 000051 1852 VRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILS 1929 (2612)
Q Consensus 1852 ~~~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~ 1929 (2612)
... -.+..++..++-++|......+. .. ..+.++..+...+...+..+|.....++.++....+.. ..+.+.+.+.
T Consensus 422 ~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~ 499 (526)
T PF01602_consen 422 LLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLL 499 (526)
T ss_dssp HHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHH
Confidence 222 23445677777777776654433 11 56667777777777778889999999999999887653 5678888888
Q ss_pred hhcC--CCChhHHHHHHHHHHH
Q 000051 1930 RGLK--DPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1930 ~~L~--d~~~~vR~~a~~aL~~ 1949 (2612)
.... +.++++|+.++..+.-
T Consensus 500 ~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 500 SLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp CHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHH
Confidence 8877 7899999999876553
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.42 E-value=8.2e-10 Score=151.25 Aligned_cols=460 Identities=19% Similarity=0.248 Sum_probs=310.9
Q ss_pred HccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh
Q 000051 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2612)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2612)
.....+..+|+.+.-.|..+....+. .+.-..+.+.+-+.++++..|..|.++++.+. .+...+.+.|.+.+.
T Consensus 50 l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 50 LISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKL 122 (526)
T ss_dssp TCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHH
Confidence 44677888898888888888877665 33345667777789999999999999999876 556778899999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHh
Q 000051 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011 (2612)
Q Consensus 1932 L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~ 2011 (2612)
+.++++.||..|+.++..+... .++..... +++.+...+.|+++.|+.+|..++..+ + ..+.....+++.+...
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~-~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRK-DPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHH-CHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcc-CHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHH
Confidence 9999999999999999998765 33333221 688889999999999999999998888 2 1121111334443333
Q ss_pred c----cCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhH--hhHHHHHHHhcCC
Q 000051 2012 L----EDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGD 2085 (2612)
Q Consensus 2012 L----~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l--~~il~~Ll~~L~~ 2085 (2612)
| ...+.+ .....+..+....... ...- ..+++.+...+.+
T Consensus 197 L~~~l~~~~~~---------------------------------~q~~il~~l~~~~~~~-~~~~~~~~~i~~l~~~l~s 242 (526)
T PF01602_consen 197 LCQLLSDPDPW---------------------------------LQIKILRLLRRYAPME-PEDADKNRIIEPLLNLLQS 242 (526)
T ss_dssp HHHHHTCCSHH---------------------------------HHHHHHHHHTTSTSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchH---------------------------------HHHHHHHHHHhcccCC-hhhhhHHHHHHHHHHHhhc
Confidence 2 222211 1112222222211111 1111 3566666666666
Q ss_pred CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCC
Q 000051 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 2165 (2612)
.++.+.-.+..++-.+.. ..+.+..+++.|...+.++++.+|..++.++..++...+..+. .....+..+..++
T Consensus 243 ~~~~V~~e~~~~i~~l~~--~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~ 316 (526)
T PF01602_consen 243 SSPSVVYEAIRLIIKLSP--SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDD 316 (526)
T ss_dssp HHHHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSS
T ss_pred cccHHHHHHHHHHHHhhc--chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCC
Confidence 666666555555543322 1234678899999999999999999999999999876532222 1112233334488
Q ss_pred ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHh-cCCHH
Q 000051 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAE 2244 (2612)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~-~~~~~ 2244 (2612)
|..++..+.+.|..++.. +.+..+++.|...+. .++.+
T Consensus 317 d~~Ir~~~l~lL~~l~~~-----------------------------------------~n~~~Il~eL~~~l~~~~d~~ 355 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLANE-----------------------------------------SNVKEILDELLKYLSELSDPD 355 (526)
T ss_dssp SHHHHHHHHHHHHHH--H-----------------------------------------HHHHHHHHHHHHHHHHC--HH
T ss_pred ChhHHHHHHHHHhhcccc-----------------------------------------cchhhHHHHHHHHHHhccchh
Confidence 899999998888877642 122335555666663 34777
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcC
Q 000051 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD 2324 (2612)
Q Consensus 2245 ~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d 2324 (2612)
.+..+..+++.++...+ .....++.. ++..+... ...+...+...+..++...+.. -......+.+.+.+
T Consensus 356 ~~~~~i~~I~~la~~~~-~~~~~~v~~----l~~ll~~~-~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFP-PDAEWYVDT----LLKLLEIS-GDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHHHHHHHHG-SSHHHHHHH----HHHHHHCT-GGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTS
T ss_pred hhhhHHHHHHHHHhccC-chHHHHHHH----HHHhhhhc-cccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHH
Confidence 99999999999998775 344444433 45666643 4556777888888888775542 23356666777777
Q ss_pred -CCHHHHHHHHHHHHHHHhccCC---hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh
Q 000051 2325 -STRTVRSSAALALGKLSALSTR---VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2325 -~~~~vR~~Aa~aLg~L~~~~~~---~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2612)
.++.++..+++.+|......+. ...++..+.+.....+..+|..++.++..+....+.. ...+.+...+....
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~---~~~~~i~~~~~~~~ 502 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN---EVQNEILQFLLSLA 502 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST---THHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch---hhHHHHHHHHHHHh
Confidence 4889999999999999766555 6666777777776666789999999999998876542 23457888888888
Q ss_pred c--CCCHHHHHHHHHHHHHH
Q 000051 2401 Y--HDDDHVRVSAASILGIM 2418 (2612)
Q Consensus 2401 ~--~~~~~vr~~aa~~Lg~L 2418 (2612)
. +.+.++|..|.+.+.-+
T Consensus 503 ~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 503 TEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHS-SSHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHH
Confidence 7 77999999888776544
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=1.7e-08 Score=136.12 Aligned_cols=501 Identities=13% Similarity=0.109 Sum_probs=317.0
Q ss_pred HHhcCCCHHHHHHHHHHH-HHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRAL-GELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL-~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l 1970 (2612)
+.|.+.+...|..+.+.+ ..+. .|.+ ...+.+-+.+.+.+++.++|.-+...+...... .+ +..--.++.+
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt--~G~D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~p----elalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMT--MGRD-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QP----EKALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH--CCCC-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-Ch----HHHHHHHHHH
Confidence 334555555554443322 2221 2433 344555566677788888888877777654321 11 1223457778
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1971 RTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1971 ~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
.+-+.|+++.+|..|.++++.+.. .
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~-------~------------------------------------------------ 135 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRV-------S------------------------------------------------ 135 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCc-------H------------------------------------------------
Confidence 888888999999888776654311 1
Q ss_pred hhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc-cHHHHHHHHHhhcCCCChhHH
Q 000051 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIR 2129 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~~~~~~vR 2129 (2612)
..++.+++.+.+.+.|.++-||..|+-|+..+.....+- .-..+++.|.+.+.|.|+.|.
T Consensus 136 -------------------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv 196 (746)
T PTZ00429 136 -------------------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA 196 (746)
T ss_pred -------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence 112334455666778889999999999988886533221 112466677777889999999
Q ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh
Q 000051 2130 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2612)
Q Consensus 2130 ~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2612)
.+|+.++..+.+..+..+ ......+..++..+.+-++-.+-...+.|.. ..|.+
T Consensus 197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~---------------------- 250 (746)
T PTZ00429 197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSD---------------------- 250 (746)
T ss_pred HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC----------------------
Confidence 999999999987655333 2344555666666655444333333333322 11110
Q ss_pred hhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000051 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2612)
Q Consensus 2210 ~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk 2289 (2612)
......++..+...+.+.++.+--.++.++-.+.....++.++..+..+..||+.++. .+++++
T Consensus 251 --------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s--s~~eiq 314 (746)
T PTZ00429 251 --------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR--RDAETQ 314 (746)
T ss_pred --------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC--CCccHH
Confidence 0111234555555667778888777888777766544334444555567788888754 367899
Q ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHH
Q 000051 2290 SAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAI 2369 (2612)
Q Consensus 2290 ~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~ 2369 (2612)
-.++..+..++...+..+.+ -...|.-..+|++. ||......|-.++. ..++..++.+|..-+.+.|.+.+..+
T Consensus 315 yvaLr~I~~i~~~~P~lf~~----~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 315 YIVCKNIHALLVIFPNLLRT----NLDSFYVRYSDPPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHHHHHHHHCHHHHHH----HHHhhhcccCCcHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999888876643332 25566666788775 89999888888754 46788999999998888888999999
Q ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhc---CCCCchhh
Q 000051 2370 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA---SSPSWAAR 2446 (2612)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~---~~~~~~~~ 2446 (2612)
+.|++.+..+. +...+.+++.|.+.+.+..+ +...+...+-.+....|+.. ++..+.... .-.+...+
T Consensus 389 IrAIg~lA~k~-----~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AK 459 (746)
T PTZ00429 389 VRAIASLAIKV-----DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAK 459 (746)
T ss_pred HHHHHHHHHhC-----hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHH
Confidence 99999987664 44667888888888876544 33346677777777777642 233333211 12333345
Q ss_pred HHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhc-
Q 000051 2447 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL- 2525 (2612)
Q Consensus 2447 ~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l- 2525 (2612)
...++.++.... .+- -...++..+.+...++.+.+|-..+.+..++...... .....+..++...
T Consensus 460 aaiiWILGEy~~----~I~---~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-------~~~~~l~~vL~~~t 525 (746)
T PTZ00429 460 VSLLWMLGEYCD----FIE---NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-------GMEPQLNRVLETVT 525 (746)
T ss_pred HHHHHHHHhhHh----hHh---hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHHHH
Confidence 555555555432 221 1234555555666677889999999999998876421 2344555566432
Q ss_pred -CCCCHHHHHHHHHHHHHHHh
Q 000051 2526 -HDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2526 -~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
.++++|||..|..-.+-+..
T Consensus 526 ~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 526 THSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred hcCCChhHHHHHHHHHHHHcC
Confidence 46888999999987665543
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.26 E-value=2.4e-07 Score=125.19 Aligned_cols=493 Identities=12% Similarity=0.078 Sum_probs=308.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcc-hHhHHH
Q 000051 1225 LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVD 1303 (2612)
Q Consensus 1225 l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~-~~~i~~ 1303 (2612)
+.+++...|..++.-+...+. .|.+ +..+++-+-+.+... +-.+|.-+..++..++ +.+|. .--.+.
T Consensus 41 L~s~~~~~kk~alKkvIa~mt-~G~D-vS~LF~dVvk~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaIN 108 (746)
T PTZ00429 41 LNGTDSYRKKAAVKRIIANMT-MGRD-VSYLFVDVVKLAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVN 108 (746)
T ss_pred HHCCCHHHHHHHHHHHHHHHH-CCCC-chHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHH
Confidence 345555555444444333322 3543 455555555555431 2345655555554443 33444 334578
Q ss_pred HHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHH
Q 000051 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL 1383 (2612)
Q Consensus 1304 ~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L 1383 (2612)
.+.+-+.++++.+|..+.++++.+. ..+-.+.++..+.+.+. +.+.-+|+.|+.|+..+....+. .+....+.+.|
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~pe-lv~~~~~~~~L 184 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDMQ-LFYQQDFKKDL 184 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCcc-cccccchHHHH
Confidence 8999999999999999998887542 11112334444444454 44567999999999998765442 22223577888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HHhHHhHHH
Q 000051 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLP 1461 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~--~~~v~~ilp 1461 (2612)
.+++.+. |+.+...|+.++..+.+..+..+. .....+..++..+.+-++--+-...+. +....+ ......++.
T Consensus 185 ~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~l---L~~y~P~~~~e~~~il~ 259 (746)
T PTZ00429 185 VELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILEL---LAAQRPSDKESAETLLT 259 (746)
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHH---HHhcCCCCcHHHHHHHH
Confidence 8888877 899999999999999876654332 234445556666665554444433333 333222 223467777
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
.+...|.+.+..+..+|+.++..+.... ++.....+..+.+.++.+ ..+.+++|-.+.+.+..+....+ ..+...+.
T Consensus 260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~ 337 (746)
T PTZ00429 260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLD 337 (746)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHH
Confidence 8888888888888888888887776432 333334444455555555 45678999999999988876442 23344455
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh
Q 000051 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2612)
.+.-..+||.. ++ ..++.+... .++.....++..|.....+.+.+.++.+..++|.++..+. ...+.
T Consensus 338 ~Ff~~~~Dp~y-IK~~KLeIL~~L-----ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~ 405 (746)
T PTZ00429 338 SFYVRYSDPPF-VKLEKLRLLLKL-----VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPD 405 (746)
T ss_pred hhhcccCCcHH-HHHHHHHHHHHH-----cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHH
Confidence 55556678765 55 567666531 2344566788888888889999999999999999987542 24556
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHhChhhHHhH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L--~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2612)
++..|.+++.+... +...++..+..+.+.....+ +++.+...+ ..-.....|...++.+|+.+..... ...+
T Consensus 406 cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~ 479 (746)
T PTZ00429 406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDI 479 (746)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHH
Confidence 77777777776544 34467788888877665432 455555433 2222344566667778887654422 2445
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhc-C-CCChhHHHHHHHHHH
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGH 1762 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L-~-d~~~~VR~~Al~al~ 1762 (2612)
+..++....+.++.||-..+.+...+.-..+.+.. ..+..++..+ . +++.+||+-|.--.+
T Consensus 480 L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 480 IQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 55555655667888998877777777666554333 3444455433 3 466799998865444
No 34
>PRK09687 putative lyase; Provisional
Probab=99.26 E-value=4.9e-10 Score=136.07 Aligned_cols=253 Identities=17% Similarity=0.148 Sum_probs=170.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH
Q 000051 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2612)
Q Consensus 1302 ~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~ 1381 (2612)
.+.|...|.|++..||..++..|..+ ++ +..++.+.. +.++++...|..|+++|+.+-..- ... ...++
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~~--~~~~~~l~~-ll~~~d~~vR~~A~~aLg~lg~~~--~~~--~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----GG--QDVFRLAIE-LCSSKNPIERDIGADILSQLGMAK--RCQ--DNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----Cc--chHHHHHHH-HHhCCCHHHHHHHHHHHHhcCCCc--cch--HHHHH
Confidence 56678888999999999998887643 21 223333333 455666789999999988753211 111 14667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHH
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2612)
.|...+.++.++.+|..|+.++|.++.... .+....++.+...+.|+++.||..+..+++.+ +-...++
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-------~~~~ai~ 162 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-------NDEAAIP 162 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------CCHHHHH
Confidence 777664444489999999998888753222 12335666677788888999999888888655 2245678
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~ 1541 (2612)
.|+..+.+++|.+|..|+..||.+.+.. +.+++.|...++|.+..||..|..+|+.+.. ...+|.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av~~ 227 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVLSV 227 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHHHH
Confidence 8888888888888888888888773322 4566778888888888888888888887643 134455
Q ss_pred HHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhH
Q 000051 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2612)
Q Consensus 1542 Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll 1621 (2612)
|++.+.++ + ++..++.++|.+.. +..+
T Consensus 228 Li~~L~~~---------------------------------------~--~~~~a~~ALg~ig~------------~~a~ 254 (280)
T PRK09687 228 LIKELKKG---------------------------------------T--VGDLIIEAAGELGD------------KTLL 254 (280)
T ss_pred HHHHHcCC---------------------------------------c--hHHHHHHHHHhcCC------------HhHH
Confidence 55444433 2 34556666666533 2366
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHH
Q 000051 1622 PEVKKVLV-DPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1622 ~~L~~~L~-d~~~~VR~~A~~aL~ 1644 (2612)
|.|..++. ++++.|+..|..++.
T Consensus 255 p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 255 PVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHh
Confidence 77777775 677888888777664
No 35
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.6e-06 Score=113.56 Aligned_cols=639 Identities=15% Similarity=0.172 Sum_probs=347.3
Q ss_pred ChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHH-HHHHH--------HHHHhcC
Q 000051 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAE--------DIWDRYG 1125 (2612)
Q Consensus 1055 ~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~--------~~w~~~~ 1125 (2612)
..+++.+.+.+++.+|+..|++|+++|.+.... |.... ..+.+..-|..+.+ |..|. +.|+...
T Consensus 2 d~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv~--~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 2 DLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFVS--SLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred ChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHHH--HHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 346788899999999999999999999976421 22222 23334445554444 33332 4587662
Q ss_pred -----CCCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000051 1126 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2612)
Q Consensus 1126 -----~~~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 1194 (2612)
+.++++ + ..++.++.+....+|-....++-.++ ..+|+.|+.++.......+ . .....-
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lq----s------~~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQ----S------QDANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhc----C------cchhhH
Confidence 223322 4 57888888889999999998887765 4688888888877765432 1 121234
Q ss_pred hHHHHHHHHhhhhhC--CC----ChhHH----HHHHHh---hhcCCCcHHHH---HHHHHHHHHHHHh-h-----Ccchh
Q 000051 1195 QGIALALHSAADVLR--TK----DLPVI----MTFLIS---RALADTNADVR---GRMLNAGIMIIDK-H-----GRDNV 1252 (2612)
Q Consensus 1195 ~~~~~al~~~~~~~~--~~----~~~~i----~~~li~---~~l~d~~~~VR---~~~~~a~~~~i~~-~-----g~~~~ 1252 (2612)
.++..++..++...+ .+ .+..+ +..+.. +-+.+.+.... ...+......+-. . ..+..
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 677888888876432 11 11111 122211 22334433322 2223322222211 1 12334
Q ss_pred hhhHHHHHHHhccCCCCh--HHhhh---------HHhHHHHHHHHHhhhhc-cCC--c------------chHhHHHHHH
Q 000051 1253 SLLFPIFENYLNKKASDE--EKYDL---------VREGVVIFTGALAKHLA-KDD--P------------KVHAVVDKLL 1306 (2612)
Q Consensus 1253 ~~Llp~~~~~l~~~~~~~--~~~d~---------vr~~~i~~l~~La~~l~-~~~--~------------~~~~i~~~L~ 1306 (2612)
..-+.+|-..++.+-+.+ +.+.. .+.=+...+.++..... ... + ..+.+.+.++
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555656665543322 11111 23333444444443322 111 1 1122222222
Q ss_pred Hhc---CC---CCHHHHHHHHhhhHHhH------hhhcchhHHHHHH-HHHHhhc---------CC--------------
Q 000051 1307 DVL---NT---PSEAVQRAVSSCLSPLM------QSMQDEAPTLVSR-LLDQLMK---------SD-------------- 1350 (2612)
Q Consensus 1307 ~~L---~~---~~~~Vq~~~~~~L~~lv------~~~~~~~~~li~~-ll~~L~~---------~~-------------- 1350 (2612)
+.+ +. -++.|-.-+..-+...+ +.++++..-++.. ++..+.- .+
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 222 22 12333222222221111 1111111111111 1111110 00
Q ss_pred ChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhhHH-H
Q 000051 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVI-Q 1420 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-------~~~~~~~R~~Al~al~~L~~~~~~--~~~~~v~-~ 1420 (2612)
-+..+-+|...+-.+++..|...+. .++.++.+.+. +.++++..+||+.+++.+++.+.+ .+...+. -
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f 462 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF 462 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH
Confidence 1233457778888888888888886 68888887775 234788999999999999987763 2334344 3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHHh-HHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~-~~l~~~~-v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p---~~l~ 1494 (2612)
+++++++.|.++.-..|..|+..+..+. ..++... ....+....+.|. +.+-.+|..|+.+|..+....+ ..++
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6778889999999999999999988887 4566554 3677777777777 7778999999999999888755 4488
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHH-HHHHhhcCC--hh-HhhHHHHHHhhcCC---CChhHH-HHHHHHH--hc-
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHTK-YSLDILL--QT- 1563 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~-i~~ivp~Ll~~l~d---~~~~~r-~al~~L~--~~- 1563 (2612)
+++|.++..++.+.++.+.+.-....+.+ +.+++.+.. .+ .+.+...+.+.+.+ .++... .++.+++ .+
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 99999999999999887666555544433 455554431 12 25566666666653 111111 1211111 00
Q ss_pred -ccccc------CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHH
Q 000051 1564 -TFVNT------VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2612)
Q Consensus 1564 -~~~~~------i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR 1636 (2612)
+.... +....-+.+.|.+...+...-.+.-..++.++..+.-. .+++.|-.=++++.+.+++.+.
T Consensus 623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~~----- 694 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQDD----- 694 (1010)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhhh-----
Confidence 01000 11111123334444444444344444444444433211 1233333333444444444332
Q ss_pred HHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC--CChhhHh
Q 000051 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRD 1714 (2612)
Q Consensus 1637 ~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~--~~~~vR~ 1714 (2612)
|-+|+++++|.+-+.+.-+.+. ... .+.+...++.-+.+.+.+ ....-.+
T Consensus 695 --------------~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~ 746 (1010)
T KOG1991|consen 695 --------------GIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDCE 746 (1010)
T ss_pred --------------hHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHHH
Confidence 2347788888776655544322 000 011122222222233333 3445567
Q ss_pred HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCC
Q 000051 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2612)
Q Consensus 1715 ~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d 1748 (2612)
+++.++..+...+++....|++..+...+..+..
T Consensus 747 ~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 747 SACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 8899999999999887778888877777777765
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21 E-value=1e-09 Score=156.04 Aligned_cols=273 Identities=22% Similarity=0.251 Sum_probs=200.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
.++.++..+.|+++.||..|..++..+. -...+|.|...|.++++.+|..|+..|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 4567778889999999999999988762 245678888889999999999999999887643221
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
.+.+...|+|+++.||.+|+.+|+.+... + ...+.+.+.|++..+| .++.+|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAG--D------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccC--C------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 24566778899999999999999987521 1 2356677889988888 577777641 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll 1659 (2612)
.+...+.|.++.+|..++..|+.+... . ....+.+..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999999887542 1 1135667788889999999999999988632 1 2233
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHH
Q 000051 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ii 1739 (2612)
+.+...+.++ +..+|..++++|+.+- . ++.++.+...+.++++.||..+..+|+.+. +. +...
T Consensus 810 ~~l~~aL~d~-d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALRAS-AWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhcCC-ChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 4455666554 4568888888887642 1 234567778888899999999998888851 11 3456
Q ss_pred HHHHhhcCCCChhHHHHHHHHHH
Q 000051 1740 PAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1740 p~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
+.+...+.|++..||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 67778888888999998888775
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=6.6e-09 Score=130.06 Aligned_cols=382 Identities=18% Similarity=0.172 Sum_probs=263.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-cchh-hHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHh---
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGR-LFEP-YVIQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG--- 1455 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~-~~~~-~v~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~--- 1455 (2612)
.+.+.+.+. +...+..+...|..+...-.. .... ....++|.+..++. +.++.++..|+.++..+++..+...
T Consensus 70 ~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 344444444 466666777767666544332 1111 12268999999996 7789999999999999988666552
Q ss_pred H-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCH-HHHHHHHHHHHHHHhhcC-
Q 000051 1456 V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIK- 1531 (2612)
Q Consensus 1456 v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~- 1531 (2612)
+ ...+|.++..+.+++-.++.-|+++||.++...|..-.-.+ ..+++.|+..+...++ .....+.++|.++++.-.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 1 56788899999999999999999999999987665322222 3567778888877665 567788999999987642
Q ss_pred ChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC
Q 000051 1532 NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2612)
Q Consensus 1532 ~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~ 1611 (2612)
.|.+. ....++|.|.+.+.+.+.++...|+.++..+... .++
T Consensus 229 ~P~~~------------------------------------~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne 270 (514)
T KOG0166|consen 229 SPPFD------------------------------------VVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNE 270 (514)
T ss_pred CCcHH------------------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChH
Confidence 12111 1233556666666777778888888888887763 222
Q ss_pred cchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000051 1612 DMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2612)
Q Consensus 1612 ~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~ 1686 (2612)
...-. -..++|.+..+|.++.+.++..|.+++|.++...+.. .-...+|.+...+........|..++..++.+.
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT 350 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh
Confidence 22211 2358899999999999999999999999987654432 124667888887875555557889999999998
Q ss_pred HHhChh---hH-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh--HHHHHHhhcCCCChhHHHHHHHH
Q 000051 1687 AALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGA 1760 (2612)
Q Consensus 1687 ~~~g~~---~l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~--iip~ll~~L~d~~~~VR~~Al~a 1760 (2612)
.+-... .+ ..++|.++..+...+..+|..+..+++.++.....+-..|+-. +++++...|.-.+..+-..++.+
T Consensus 351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 743322 11 4688999999999999999999999998887665655667544 89999999977777777777888
Q ss_pred HHHHHHHhhhch------hhh------hHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1761 GHVLVEHYATTS------LPL------LLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1761 l~~lv~~~~~~~------i~~------llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
+..+.+...... ... -+..++..-.+++..+...|...+...
T Consensus 431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 777665322111 111 122233333455656666666666665
No 38
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=1.6e-09 Score=131.53 Aligned_cols=222 Identities=19% Similarity=0.154 Sum_probs=128.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
++.|...+.++ |..+|..|+.+|+.+.. ..+++.+...+.|+++.+|..+..+++.+... .......
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~--~~~~~~a 91 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMA--KRCQDNV 91 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--ccchHHH
Confidence 34455566666 78888888887765431 34566677777888888888888888876321 1112345
Q ss_pred HHHHHhh-hcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhH
Q 000051 1460 LPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2612)
Q Consensus 1460 lp~Ll~~-L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2612)
+|.|... +++++|.+|..++.+||.+....+. ..+..++.+...+.|+++.||..++.+|+.+.. ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHH
Confidence 6666655 5677788888888888776432211 124455566667778888888888888865542 234
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1539 vp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++.|+..+.|++..+| .|+.+|+.... .-+.+.+.|...+.|.++.+|..|...|+.+..
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~-------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------ 221 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY-------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------ 221 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------
Confidence 5666666666655555 34444443100 012344555555555555555555555554321
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
+..+|.|.+.+.+++ +|..++.++|.+
T Consensus 222 ~~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 222 KRVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred hhHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 124455555555543 444455555543
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=2.4e-09 Score=152.24 Aligned_cols=274 Identities=22% Similarity=0.231 Sum_probs=203.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHH
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~ 1380 (2612)
.++.|.+.|.|+.+.||..+++.|+.+- .+..++.|...| ++++..+|..|+.+|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~--------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP--------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc--------h
Confidence 4567888899999999999999987652 234556666555 556688999999999887543221 1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHH
Q 000051 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2612)
Q Consensus 1381 ~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~il 1460 (2612)
+.+...++++ |+.+|..|+.+|+.+.. +. ...++..+.|+++.||.+|..++..+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 2345556665 89999999988887641 11 1245678899999999999999887511 1
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1461 p~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
+.+...+.++++.+|..++..|+.+....+ ..++.|..+++|+++.||.+|..+|+.++.. ....+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345677889999999999999988754322 2256678889999999999999999988642 22345
Q ss_pred HHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh
Q 000051 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ 1619 (2612)
.+...+.|+++.+| .|+.+|... .. ...++.|...++|+++.||..|..+|+.+. ++ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l------~~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA------AA---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc------cc---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 67788889988888 477777541 11 235688888899999999999999998751 12 23
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
..+.|...++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 67778888999999999999998864
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6e-09 Score=130.41 Aligned_cols=343 Identities=20% Similarity=0.246 Sum_probs=246.2
Q ss_pred HHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc-h-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chh
Q 000051 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-E-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2612)
Q Consensus 1303 ~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~-~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l 1374 (2612)
+.++..+....+..|..+..++..+...... . ....++.+.+.|...++...+..|+++|..++.+... ..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3444444444444466666665555433221 0 1246778888887666678899999999999987542 223
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHh
Q 000051 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVV--AVREAAECAARAMMSQ 1450 (2612)
Q Consensus 1375 ~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~--~VR~aa~~al~~i~~~ 1450 (2612)
.....++.+..++.+. +..+|+.|+.+++.++...+ .+..|+. .+++.++..+..+.. .+|.++|..-..|-..
T Consensus 149 v~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 3346777788888888 78999999999999985443 4667776 578888888876664 6776666555555333
Q ss_pred hc--H-HhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1451 LS--A-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1451 l~--~-~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
-+ + ..+..++|.|...+.+.+-.+...+|+++..++.+.++.+...+ ..++|.|.++|....+.|+..|.+++|++
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 12 2 25699999999999999999999999999999988887766554 47899999999999999999999999997
Q ss_pred HhhcCCh--hH--hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccc--cCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1527 GSVIKNP--EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1527 ~~~~~~~--~i--~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~--~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
+..-... .+ ...+|.|...+. .|.++.+ +|+.++.+.+... .++.-.-+.++|.|...+...+.++|+.|+.
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 7542211 11 457788888887 6666666 6888877632211 1222233578999999999999999999999
Q ss_pred HHHHHhhccCCCCcchhhH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1599 IVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
++++++.. +.+ +-..|+ ..+++.+..+|.-++..+-..+..++..+...
T Consensus 387 aIsN~ts~-g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 387 AISNLTSS-GTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHhhccc-CCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99999875 343 333443 34788888888777777777888888877664
No 41
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.99 E-value=3.2e-05 Score=100.30 Aligned_cols=563 Identities=17% Similarity=0.192 Sum_probs=285.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHH--------HHHHHhcC--C
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYG--Y 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--------~~~w~~~~--~ 1126 (2612)
+.+-.+|.|.+|||.++|.+|+.++....+.. .....+.++- +.++..-..|++| +.+|..+. +
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~-----~f~~aL~~va-~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELTE-----GFGVALAEVA-ANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccch-----HHHHHHHHHH-hCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 56788999999999999999999999875321 1112222322 1223333344443 46786532 2
Q ss_pred CCCC----C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1127 DFGT----D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1127 ~~~~----~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
..++ + + ..|+..+.+++..+|.+++.++..++. .||+.|++++..+..+... .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 2222 1 3 456677788999999999999998865 6999999999999876431 12235577
Q ss_pred HHHHHHHhhhhhCC--------CChhHHHHHH-HhhhcCCC--cHHHHHHHHHHHHHHHHhhCcc---h----hhhhHHH
Q 000051 1197 IALALHSAADVLRT--------KDLPVIMTFL-ISRALADT--NADVRGRMLNAGIMIIDKHGRD---N----VSLLFPI 1258 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~--------~~~~~i~~~l-i~~~l~d~--~~~VR~~~~~a~~~~i~~~g~~---~----~~~Llp~ 1258 (2612)
++.++..+...... -....+...+ +..-.++. -...|......+...+..++.- + +..+++.
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~ 227 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQ 227 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888877653321 1111211111 01111121 1122223333444444444431 2 2333444
Q ss_pred HHHHhccC---CCChHHhhhHHhHHHHHHHHHhhhhccC-CcchHhHH--------------------------------
Q 000051 1259 FENYLNKK---ASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV-------------------------------- 1302 (2612)
Q Consensus 1259 ~~~~l~~~---~~~~~~~d~vr~~~i~~l~~La~~l~~~-~~~~~~i~-------------------------------- 1302 (2612)
|-..+... ..+ .+-..|.....++..+...++.. .+.+...+
T Consensus 228 ~~~~l~h~l~~~~g--~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~ds 305 (1005)
T KOG2274|consen 228 FMDILEHPLQRNDG--SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDS 305 (1005)
T ss_pred HHHHHhhhhccccc--chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCC
Confidence 43333321 111 11122333333333333222211 11111000
Q ss_pred -----------HHHHHhcCCC--CHHHHHHHHhhhHHhHhh----h---cchhHHHHHHHHHHhhcCCC-hHHHHHHHHH
Q 000051 1303 -----------DKLLDVLNTP--SEAVQRAVSSCLSPLMQS----M---QDEAPTLVSRLLDQLMKSDK-YGERRGAAFG 1361 (2612)
Q Consensus 1303 -----------~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~----~---~~~~~~li~~ll~~L~~~~~-~~~R~~Aa~~ 1361 (2612)
-.++++++.- +..+..++.+.+++++.. . .+....+....-+...+.++ +..|..+...
T Consensus 306 d~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~ 385 (1005)
T KOG2274|consen 306 DPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDL 385 (1005)
T ss_pred chhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHH
Confidence 0000100000 000111111111111110 0 00001111111111112222 3566666666
Q ss_pred HHHHHhhhCcchhhhhcHHHH----HHH-----HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC-
Q 000051 1362 LAGVVKGFGISSLKKYGIAAT----LRE-----GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD- 1431 (2612)
Q Consensus 1362 L~~l~~~lg~~~l~~~~i~~~----L~~-----~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D- 1431 (2612)
+-.+....|...+. .+.+. +.. .......|...++-+.+.+... .++....+...+...+...+.-
T Consensus 386 ~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~ 461 (1005)
T KOG2274|consen 386 LLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQ 461 (1005)
T ss_pred HHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccc
Confidence 66777777765543 22222 221 1223334555554444444433 3333344555555555555542
Q ss_pred CCHHHHHHHHHHHHHHHHh--hcHHhHHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh
Q 000051 1432 QVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~--l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L 1508 (2612)
..|..--.+..++....+. ..+.-...++-..+..+. +.....|.+++.++..+ |.++.+.+.+|.|+..+.++.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~--~~~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGY--CKVKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhc--cCceeccccchHHHHHHHHHc
Confidence 2333333444444444433 222233444444455544 33445676777666543 467778888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCChhH-----hhHH----HHHHhhcCCCChh--HHHHHHHHHhccccccCChhhHhhH
Q 000051 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLV----PTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLALL 1577 (2612)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~iv----p~Ll~~l~d~~~~--~r~al~~L~~~~~~~~i~~~~l~~i 1577 (2612)
.+...+|-..-.++|...++.- |+. ..+. ..+.+...||.-. ..++++.+.+. .....+.....
T Consensus 540 s~~s~evl~llmE~Ls~vv~~d--pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~---~~~~g~m~e~~ 614 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLD--PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI---AANYGPMQERL 614 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccC--hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---HHhhcchHHHH
Confidence 9999999999999999888753 322 2334 4445556677321 12445544431 11123455667
Q ss_pred HHHHHHhhcCCC----HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh
Q 000051 1578 VPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1578 ip~L~~~l~d~s----~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+|.+..-+.... ...-..+.+++..+.+. +.+.--...+....|.+.++.- ..+..+-..+.+||.+++..
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 888888776554 56667788888888775 3322223345556777766644 45667778889999988875
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=4.5e-05 Score=97.89 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHH------HHHHHHhcCCC---
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD--- 1127 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------a~~~w~~~~~~--- 1127 (2612)
+.+...|..+++||+++|..+|++|.+...- ++. .+.++..+-....|.....++. .++.|....-.
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q--~~y--~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQ--QNY--PLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccC--CCc--hHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 5678889999999999999999999876421 222 3445555555555544443332 23578654322
Q ss_pred CCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Q 000051 1128 FGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLY 1176 (2612)
Q Consensus 1128 ~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~ 1176 (2612)
+.+. + ..++...-+....++....+|+.-+.+ .+|+.|+.++..|.+..
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~l 135 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARL 135 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhc
Confidence 2222 3 334444456678999999999988874 57888888888877653
No 43
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=0.00039 Score=89.65 Aligned_cols=683 Identities=15% Similarity=0.173 Sum_probs=326.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH--HHHHHHhcccc------ccCChhhHhhHHHHHH
Q 000051 1511 THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFV------NTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1511 ~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~--al~~L~~~~~~------~~i~~~~l~~iip~L~ 1582 (2612)
++|.+|+.|-++|.+.... ..+.-.++..+-+.-.|++-++-. +.+..++-... +.+.+..-..+-..+.
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv 94 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIV 94 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHH
Confidence 4578888888888877643 122233333333322232222111 12222221111 1222233334444555
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-----c--
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----F-- 1655 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-----~-- 1655 (2612)
..+-+....++....++++-+++. |+-.-.|.++|-+...++..+-.+-......-.++.+.....+ +
T Consensus 95 ~lMl~s~~~iQ~qlseal~~Ig~~-----DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~E 169 (960)
T KOG1992|consen 95 TLMLSSPFNIQKQLSEALSLIGKR-----DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLE 169 (960)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 555556677887777888777652 5555678899999999887666655555555555666554321 1
Q ss_pred ------------hhhHHHHHHHhccCCCHHH--H--HHHHHHHHHHHHHhC----h----hhHHhHhHHHHHhccCC---
Q 000051 1656 ------------PDLVSWLLDALKSDNSNVE--R--SGAAQGLSEVLAALG----T----VYFEHILPDIIRNCSHQ--- 1708 (2612)
Q Consensus 1656 ------------~~ll~~L~~~L~~~~~~~~--R--~~aa~~L~~i~~~~g----~----~~l~~llp~l~~~~~~~--- 1708 (2612)
.+++...++..+...+... + .++..-+..+.-.+. + +.++..|+.+.+.+...
T Consensus 170 IK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~ 249 (960)
T KOG1992|consen 170 IKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPL 249 (960)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcc
Confidence 1111122222222211110 0 011111122222221 1 23345566666655422
Q ss_pred ----------ChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh-----hHHHHHHHHHHHHHHH--hhhc
Q 000051 1709 ----------RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE-----SVRDAALGAGHVLVEH--YATT 1771 (2612)
Q Consensus 1709 ----------~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~-----~VR~~Al~al~~lv~~--~~~~ 1771 (2612)
-..+|...|..+.-.+....+.|.||+++++......+.+-.. .+...|+..+..+++. |..
T Consensus 250 le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~- 328 (960)
T KOG1992|consen 250 LESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAE- 328 (960)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHh-
Confidence 1346778888888888889999999999999888888765433 3444555555554432 110
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHH--hcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~--~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L 1849 (2612)
...++ ..+..+... +++.. .. ++|+|-+. ++.+.-+
T Consensus 329 -----------~F~~~---------~vl~~i~e~VvlpN~~----lR-~eDeElFE-----------------D~pleYi 366 (960)
T KOG1992|consen 329 -----------LFEGE---------NVLAQICEKVVLPNLI----LR-EEDEELFE-----------------DNPLEYI 366 (960)
T ss_pred -----------hhcch---------HHHHHHHHhhcccccc----cc-hhhHHHhc-----------------cCHHHHH
Confidence 00000 011111111 11110 00 00100000 0011111
Q ss_pred HHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchh-----
Q 000051 1850 YMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER----- 1919 (2612)
Q Consensus 1850 ~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~----- 1919 (2612)
-..+ +|. ..-|++|++.++.+..+.......++..-++.+++... +.+|..+..+...+..+..+.+..
T Consensus 367 RRDlEGsDv-dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 367 RRDLEGSDV-DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred HHhcccCCc-chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence 1111 232 23578899999999998866555666655555555443 456777777777666666543211
Q ss_pred -----------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHH
Q 000051 1920 -----------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988 (2612)
Q Consensus 1920 -----------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~a 1988 (2612)
+...++|-|..--..+.|-.|.+++.-+...-...+ .+++-.++|.+.+.+..+..-|...|+.+
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a~s~vvhsYAA~a 521 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEAESRVVHSYAAIA 521 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 123444444432122345556665543322111122 45667788888899988888999999999
Q ss_pred HHHHHHHh--------Chhhhhh----hHHHHHHhccCCC--cchHHHHHHHHHhhhcccccccccchhhccCCcchhHH
Q 000051 1989 FSTLFKSA--------GMQAIDE----IVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNA 2054 (2612)
Q Consensus 1989 l~~l~~~~--------g~~~~~~----ilp~Ll~~L~~~~--~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~ 2054 (2612)
+.++.... |+..+.+ ++..+++.+..++ +.++-..++..+++
T Consensus 522 iEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~------------------------ 577 (960)
T KOG1992|consen 522 IEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS------------------------ 577 (960)
T ss_pred HHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH------------------------
Confidence 99885332 2222222 1222222222222 12333333333332
Q ss_pred HHHHHHHHHhCCChhhhHhhHHHHHHHhc----CC-CCHHHHHHHHHHHHHhhhhccccc-------HHHHHHHHHhhcC
Q 000051 2055 HALGALAEVAGPGLNFHLGTILPALLSAM----GD-DDMDVQSLAKEAAETVTLVIDEEG-------VESLVSELLKGVG 2122 (2612)
Q Consensus 2055 ~al~~La~~~g~~l~~~l~~il~~Ll~~L----~~-~~~~vr~~a~~al~~l~~~~~~~~-------l~~ll~~Ll~~l~ 2122 (2612)
+..++..|+.+.+++.|.+.+ +. .++.--....++++.++......+ ...++|.+..-+.
T Consensus 578 --------i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~ 649 (960)
T KOG1992|consen 578 --------ILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS 649 (960)
T ss_pred --------hCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 222233333333333333322 11 223333334444444444332111 1223333333333
Q ss_pred CCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2123 DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2123 ~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
++-...--.+...++.+.+.+...+.+.+..+++.|+. + +.|+ - +...|.++..++..+..
T Consensus 650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLs----p------~lW~----r-----~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLS----P------NLWK----R-----SGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcC----H------HHHh----h-----cCCcHHHHHHHHHHHhc
Confidence 32223333455555666555444333333333333221 0 1111 0 11223333333222221
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~ 2282 (2612)
.. ..+. -.+.+.+++.+|...+.+...+ ..+...+..++...+...+.||+.+|.+-|.+-++.
T Consensus 711 g~-----------~~~~---~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn 774 (960)
T KOG1992|consen 711 GS-----------QIVE---AADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN 774 (960)
T ss_pred Cc-----------hhhc---ccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc
Confidence 10 0011 0133566777777666654433 457888999999999888999999999999988876
Q ss_pred CCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHH
Q 000051 2283 RFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQ 2315 (2612)
Q Consensus 2283 ~~~~~-vk~~al~~L~~L~~~~~~~l~p~lpqL~ 2315 (2612)
+..+. +|.......-...++.|..+....+.++
T Consensus 775 skT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ 808 (960)
T KOG1992|consen 775 SKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQ 808 (960)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 54444 3443333333333344433333333333
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.2e-05 Score=102.31 Aligned_cols=490 Identities=19% Similarity=0.191 Sum_probs=285.8
Q ss_pred HHHHhcCCCHHHHHHHHH-HHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHH
Q 000051 1890 LISSLASSSSERRQVAGR-ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2612)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~-aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~ 1968 (2612)
|..+|.+.....+..|.+ .++-+++ |.+ ...++|...+-..+++.++|.-+-.-|-...+.-....+ --+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~--G~d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSIn 111 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK--GKD-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSIN 111 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHH
Confidence 334455555444444443 3333332 222 566777777777788999998877666654433221111 1256
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC
Q 000051 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2612)
Q Consensus 1969 ~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~ 2048 (2612)
.+.+.|.|+++.+|..|.+++..+-- .-+.|.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv-------p~IaPI----------------------------------------- 143 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV-------PMIAPI----------------------------------------- 143 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch-------hhHHHH-----------------------------------------
Confidence 77889999999999998887765411 111111
Q ss_pred cchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhH
Q 000051 2049 LSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASI 2128 (2612)
Q Consensus 2049 ~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~v 2128 (2612)
++-++-+...|..+.||..|+.|+-.+-. .+.+.-+.+...+-..+.|.++.|
T Consensus 144 --------------------------~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splV 196 (968)
T KOG1060|consen 144 --------------------------MLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLV 196 (968)
T ss_pred --------------------------HHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcc
Confidence 11112223456778888888888877643 344444577777777888999999
Q ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhh
Q 000051 2129 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 2208 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~ 2208 (2612)
--+|+.++..+|-.. .+.+..-.+.++.++-|-|+==+......|.+.++..-.+- ..+ ...+ ++..
T Consensus 197 vgsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P--~~~---~~~~---e~n~- 263 (968)
T KOG1060|consen 197 VGSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP--TVV---DSSL---EDNG- 263 (968)
T ss_pred hhHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc--ccc---cccc---ccCc-
Confidence 999998888777432 12233444556666655443223334455555544321110 000 0000 0000
Q ss_pred hhhcCCcccccCCCCCcCchhhHHHHHH----HHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCC
Q 000051 2209 RKKKGGPILIPGFCLPKALQPLLPIFLQ----GLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF 2284 (2612)
Q Consensus 2209 ~~~~~~~~~l~g~~~p~~l~~ilp~l~~----~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~ 2284 (2612)
+ .+.......+...|-...+=+..|++ .+.+.++.+-..++.+.-.++-. .-+..|..||+|.+..
T Consensus 264 ~-~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs-- 333 (968)
T KOG1060|consen 264 R-SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRS-- 333 (968)
T ss_pred c-cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhc--
Confidence 0 00000001111222122333333433 33455666655555555544421 1356778899999876
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHH
Q 000051 2285 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAG 2364 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~ 2364 (2612)
+..++...|..+..+..+-+..|.||+..+ .-+-+| ...++.-=...|..|+. ..++..+++++..-++++|..
T Consensus 334 ~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF----fv~ssD-p~~vk~lKleiLs~La~-esni~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 334 NREVQYVVLQNIATISIKRPTLFEPHLKSF----FVRSSD-PTQVKILKLEILSNLAN-ESNISEILRELQTYIKSSDRS 407 (968)
T ss_pred CCcchhhhHHHHHHHHhcchhhhhhhhhce----EeecCC-HHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHhcCchh
Confidence 678999999999999988888777765421 111222 23455555556666643 467889999999999988877
Q ss_pred HHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCC-CCc
Q 000051 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS-PSW 2443 (2612)
Q Consensus 2365 vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~-~~~ 2443 (2612)
+-..+++|++.+....+. ..+.+++-|..++++.++.|-..++-.|-.|....|..+ ..++.++...+.+ .-.
T Consensus 408 faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-~~ii~~La~lldti~vp 481 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-LEILFQLARLLDTILVP 481 (968)
T ss_pred HHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-HHHHHHHHHHhhhhhhh
Confidence 777788888777655433 457788888888888899999999999999999888654 2233333221111 011
Q ss_pred hhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000051 2444 AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2612)
Q Consensus 2444 ~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2612)
..|.+.++.++..... .+...+++...+.+...++++.++-..+.-..++....
T Consensus 482 ~ARA~IiWLige~~e~------vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 482 AARAGIIWLIGEYCEI------VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred hhhceeeeeehhhhhh------cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEec
Confidence 1122222222222222 23455678888888888888888888887777776553
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.0024 Score=84.80 Aligned_cols=336 Identities=13% Similarity=0.125 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHhCCC--hhhhHh-hHHHHHHHhcCCCCHHHHHHHHHHHHHhhh-hcc-cccHHHHHHHHHhhcC-CCC
Q 000051 2052 FNAHALGALAEVAGPG--LNFHLG-TILPALLSAMGDDDMDVQSLAKEAAETVTL-VID-EEGVESLVSELLKGVG-DNQ 2125 (2612)
Q Consensus 2052 ~~~~al~~La~~~g~~--l~~~l~-~il~~Ll~~L~~~~~~vr~~a~~al~~l~~-~~~-~~~l~~ll~~Ll~~l~-~~~ 2125 (2612)
.+.+.+|+|++..-.. +...+. -+.+.++..+.++..-+|..+++.+..+.. .+. ...+.+.+....+.+. |.+
T Consensus 437 GAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc
Confidence 3567778887754321 222232 244555666778888899999999998873 332 3457778888888887 788
Q ss_pred hhHHHHHHHHHHHHHHhcc---cchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2126 ASIRRSSAYLIGYFYKNSK---LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~---~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
..||..|+.++..|..+.. ..++++++.+++.|+.+.++-+.+..... +..++..-+.+..|.-+... +
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v---me~iV~~fseElsPfA~eL~-q---- 588 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV---MEKIVCKFSEELSPFAVELC-Q---- 588 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHhhchhHHHHH-H----
Confidence 9999999999999987655 45899999999999999987665554433 33333333333222211111 1
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc-----CCHHHHHHHH----HHHHHHHHhcCh-hhhhhchhhh
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-----GSAELREQAA----LGLGELIEVTSE-QSLKEFVIPI 2272 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~-----~~~~~r~~aa----~~L~~li~~~~~-~~l~p~v~~i 2272 (2612)
.+...|.+.+.+ .+.+.+.-+| .++..++..... ..+-.++.++
T Consensus 589 --------------------------~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~ 642 (1010)
T KOG1991|consen 589 --------------------------NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPI 642 (1010)
T ss_pred --------------------------HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 112223333332 1122222222 223333333210 0122222333
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC------
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR------ 2346 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~------ 2346 (2612)
.-|.+..+-..+-.++-..++.....+.-.. ..+.|-.=++.+.+.+++.+..-+.-....-+|-++++++..
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~-~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLS-KEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh-cccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 3333333222222233333333332222111 123343445667777888887666667777778877655321
Q ss_pred -hhHHHHHHHH-hhhcC--CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHh
Q 000051 2347 -VDPLVGDLLS-SLQVS--DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2347 -~~~~l~~Ll~-~l~~~--d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~ 2420 (2612)
.-..+-++++ .+.+. ...=+..+++-+..++..++..+ ..+++..+......+.. .+...|..+.+..-...-
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~-dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinaly 800 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLL-DQYIPLFLELALSRLTREVETSELRVMLLEVVINALY 800 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcH-hhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1122222222 23221 23345667888888888887743 56777777766665554 455677777666554443
Q ss_pred hCC
Q 000051 2421 CME 2423 (2612)
Q Consensus 2421 ~~~ 2423 (2612)
.-|
T Consensus 801 ynP 803 (1010)
T KOG1991|consen 801 YNP 803 (1010)
T ss_pred cCc
Confidence 344
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.84 E-value=1.1e-05 Score=107.38 Aligned_cols=401 Identities=16% Similarity=0.180 Sum_probs=244.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh-HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHH
Q 000051 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVP 1502 (2612)
Q Consensus 1425 ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp 1502 (2612)
++.++.+.+.+.-+.++.+++.++....+.. ...+.+.+..+|.+++..+|..++..++.++.+........ =+++++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 7888887777777888899999999887776 58888999999999999999999999999887644322211 257899
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
.+..++.|++..|.+.|.++|..+++.- +..+.+++. ...+.|.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~----------------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDS----------------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCc----------------------------------chHHHHH
Confidence 9999999999999999999999998632 222222110 0123334
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-CCCc--hh
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 1657 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g-~~~~--~~ 1657 (2612)
..+...+..+|..+.+++..++.. + .+...+.. .+++.+...+.+++.-+|..+...++.++..-. -+++ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777663 2 23333433 388888888888899999999999999987211 0111 23
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh
Q 000051 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2612)
Q Consensus 1658 ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ 1737 (2612)
+++.+.+.+.+..... |.... .=.+.+..++.++..-+..+....+.
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~--------------------------------~l~g~~~f~g~la~~~~~~v~~~~p~ 290 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSL--------------------------------LLPGRMKFFGNLARVSPQEVLELYPA 290 (503)
T ss_pred HHHHHHHHHhccccCC-cccch--------------------------------hhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 4444444443222111 11110 11233455566665534444444466
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hh--------chhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcC
Q 000051 1738 VLPAILDGLADENESVRDAALGAGHVLVEHY-AT--------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2612)
Q Consensus 1738 iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~--------~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~ 1808 (2612)
++..+...+...+...+..|+++++.+.... |. ...+.++..+-.......-.+|..++..++.++..-
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~-- 368 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG-- 368 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC--
Confidence 7777777777888889999999988775321 11 122334444444444555568888999999887421
Q ss_pred CcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH--HHH
Q 000051 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVL 1886 (2612)
Q Consensus 1809 ~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l--~~l 1886 (2612)
.+..+..........-+.++.+.... .+......+-+++|.++.++|..++.+ |+..+.+. |.+
T Consensus 369 ----------~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 369 ----------TDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREICSSPGF 434 (503)
T ss_pred ----------CCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHhCccH
Confidence 11011111112223334444433222 233345667789999999999999874 55554432 334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELV 1913 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv 1913 (2612)
+..++.+-.+++.+.+.+=..++..++
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00014 Score=92.22 Aligned_cols=238 Identities=13% Similarity=0.176 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
...++-+-++..++...+.||+.|...+-.++-.++ +.++..+|.|.+.|++++..+..+|+..+..+|...|+..
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--- 216 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--- 216 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc---
Confidence 345788889999999999999999888877766654 4678899999999999999999999999999999888743
Q ss_pred hchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcC-ChhH-hhHHHHHHhhcCCCChh--HHHHHHHHHhcccccc--C
Q 000051 1497 LPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNT--V 1569 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~-~~~i-~~ivp~Ll~~l~d~~~~--~r~al~~L~~~~~~~~--i 1569 (2612)
-.+-|.++++|.++ |..| -++.|.-|+...+ .|.+ ..++|.+.+.+...... +=+|+++++....... .
T Consensus 217 -L~LAP~ffkllttSsNNWm---LIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 217 -LQLAPLFYKLLVTSSNNWV---LIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred -ccccHHHHHHHhccCCCee---hHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 34567777777654 3222 2334444444322 3444 66777777776544322 1278888776433322 3
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
...+....+..|...+.|.+++.|.-++-+++.++. +.|+.+..+. ..+.++|.|.++.+|-.|...+-.++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVs- 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVS- 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhh-
Confidence 345667788888888999999999999999999988 4555555544 455678899999999999888877765
Q ss_pred hCCCCchhhHHHHHHHhccCCC
Q 000051 1650 MGEENFPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1650 ~g~~~~~~ll~~L~~~L~~~~~ 1671 (2612)
++.+.+++..||..+...++
T Consensus 366 --kkNl~eIVk~LM~~~~~ae~ 385 (877)
T KOG1059|consen 366 --KKNLMEIVKTLMKHVEKAEG 385 (877)
T ss_pred --hhhHHHHHHHHHHHHHhccc
Confidence 45677888888877655443
No 48
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.83 E-value=8.2e-05 Score=99.24 Aligned_cols=178 Identities=16% Similarity=0.072 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhc
Q 000051 2245 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 2323 (2612)
Q Consensus 2245 ~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~-vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~ 2323 (2612)
.|+.|-.+|..+++..| ..+...++.+...|...+.+..+.+ .-...++.+..+...++..++| +-++.+.+..++.
T Consensus 749 errgael~L~~l~~~fg-~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFG-GSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhh-HHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 47778888999999888 5555555666555555555432222 3445566666666667777777 6677788888999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc
Q 000051 2324 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 2401 (2612)
Q Consensus 2324 d~~~~vR~~Aa~aLg~L~~~~--~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~ 2401 (2612)
..+..+|.+|++|+|.+.... ......+..++..+.+.+.-+|.....-+.+++...+.....+|..-++..|...++
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 223445666666666555444444333344444444444446889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2402 HDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2402 ~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
|..+.+|.++.+++..+....|-
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999876553
No 49
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.80 E-value=9.5e-08 Score=109.13 Aligned_cols=308 Identities=17% Similarity=0.162 Sum_probs=203.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
.++.+.+.|.+....-....|+++|..++++... +.+.....+|.+.+++.+. +..+|+.++.++|.++... ..+.
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS-~~~R 192 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDS-EGCR 192 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCc-hhHH
Confidence 4556666664333335567999999999987653 2222336678888888877 6889999999999987322 2355
Q ss_pred hhHH--HHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHhhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1416 PYVI--QMLPLLLVAFSDQV---VAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1416 ~~v~--~ilp~ll~~l~D~~---~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
.|+- ..+..++..+.... ..+|.++|.....+-..-++- .+.+.+|.|.+.+.+.+..+-..||+++..+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 6665 35666666665443 356777776665554443332 458889999999988888889999999999887
Q ss_pred hCchhhhhhhc-hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC--hhH--hhHHHHHHhhcCCCChhHH-HHHHHHH
Q 000051 1488 CAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2612)
Q Consensus 1488 ~~p~~l~~~L~-~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~ivp~Ll~~l~d~~~~~r-~al~~L~ 1561 (2612)
+..+-+...+. .+.+.|+++|.+++..|+.-|.+++|++...-.. ..+ -..++.+...++.|.+.+| +++.++.
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 76555444443 4567899999999999999999999998764321 111 3466777777888888887 6777765
Q ss_pred hcccc--ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcCCCHHHHH
Q 000051 1562 QTTFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1562 ~~~~~--~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
..+.- ..+.+-.-..++|.|...+..-+..+|+.||.++.+.........+...|+ ..++..|..+|.-.+..+-+
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 53221 112222235678889999888888999999999999765422223434443 23444444444433333444
Q ss_pred HHHHHHHHHH
Q 000051 1638 VAARAIGSLI 1647 (2612)
Q Consensus 1638 ~A~~aL~~L~ 1647 (2612)
.+..|+..+.
T Consensus 433 v~LD~~eniL 442 (526)
T COG5064 433 VALDAIENIL 442 (526)
T ss_pred hhHHHHHHHH
Confidence 4444444433
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.79 E-value=1.6e-07 Score=112.99 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=141.1
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHcc
Q 000051 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2612)
Q Consensus 1775 ~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~ 1854 (2612)
.+.+.+.....+.+|..|..+++-+..++..- . ..+ ....+.+. ...++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~-----------~~~-----~~~~~~~~-----l~~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--A-----------PED-----FPPDFVEC-----LRQLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHH-----HH---HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--C-----------ccc-----cHHHHHHH-----HHHhHHHHHHHHh
Confidence 34455555557889999999999998887541 0 000 00112221 1234456666778
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhH-HHHHhhhcC
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~l-lp~L~~~L~ 1933 (2612)
|....|-..|+.+++.++...+..+.++++.++|.+++.+++++..+|..|..+|..++..++ ..+.+ .+.+..+..
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999999999999999999999998876 22344 777788889
Q ss_pred CCChhHHHHHHHHHHHHHHhhC--hhhHHH--hHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~--~~~l~~--~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
++++.+|..++.++..++...+ ...+.. .++.+++.+.+.+.|++++||++|..+|..+.+.+|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999988877 333332 35889999999999999999999999999998887764
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.75 E-value=2.6e-07 Score=111.10 Aligned_cols=183 Identities=26% Similarity=0.328 Sum_probs=132.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA-------TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~-------~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~ 1419 (2612)
..+.+|..|..|...|..++.+...... ...+++ .+...+.+. ...+-..|+.++..++..++..|.+|+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4556899999999999999987621111 112333 333444444 4556678999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc---hhhhh-
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p---~~l~~- 1495 (2612)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+...+.++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999998876 1112236777778899999999999999999887666 44433
Q ss_pred -hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1496 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1496 -~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
.++.+++.+.+++.|++++||.+|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999887753
No 52
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.69 E-value=7.2e-06 Score=109.18 Aligned_cols=352 Identities=22% Similarity=0.244 Sum_probs=233.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch-H
Q 000051 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-P 2312 (2612)
Q Consensus 2234 l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l-p 2312 (2612)
+...+.+.+.+.-..++.+|..+.+...+..+ .+++.+.|.+.+... ++.||..++..++.+.+.-........ +
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 66777777777777888889998887665544 455556677888764 789999999999888764332222111 4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHH-----HHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChH
Q 000051 2313 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 2387 (2612)
Q Consensus 2313 qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~-----l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~ 2387 (2612)
.+.+.++.++.|++..|...|+.+|..+....+..+.+ +..|...+..++..+|..+++.+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 67888999999999999999999999998766555555 6667777766677888888888877765432222 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh-H------HHHHHHHHHhhcCCCC-ch--hhHHHHHHHHH
Q 000051 2388 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG-Q------LADLLQELLNLASSPS-WA--ARHGSVLVFAT 2455 (2612)
Q Consensus 2388 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~-~------~~~~l~~ll~~~~~~~-~~--~~~~~~~~l~~ 2455 (2612)
+.. .+++.+...++++|.-++.++.++++.|+. .+.. . +.+.+-.++.....+. .. .--+.....+.
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 222 377888888888788899999999999998 3322 1 1122222222222222 11 01122223344
Q ss_pred HHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccC---CCCchhhHHHHHHHHhhcCCCCHHH
Q 000051 2456 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSEV 2532 (2612)
Q Consensus 2456 ~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~---~~~~~~l~~~l~~~~~~l~~~~~~v 2532 (2612)
+....|..+. ...+.++..+.+...+.++..+..|+.++|.+-.....+. ..........+..+.........|+
T Consensus 276 la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 276 LARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred HHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4444555554 3456788888988899999999999999998754432110 0011234556777777778889999
Q ss_pred HHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhh-------------cCCcchhhhhHHHHHHHHhcccccchhh
Q 000051 2533 RRRALSALKSVAKANPSAIMVHVALFGPALAECL-------------KDGSTPVRLAAERCAVHAFQLTRGIIYS 2594 (2612)
Q Consensus 2533 r~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~-------------~~~~~~vk~aae~~~~~~~~~~~~~~~~ 2594 (2612)
|..++.++..+-...++.-.+.+..+...+|+.. +-+=.-+|.|+.+-+-+++.=+-+...+
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i 428 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREI 428 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999977665422223334555555553 3333448999998888887665544443
No 53
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.69 E-value=0.0059 Score=80.44 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------cCC-----------hh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-------STR-----------VD 2348 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-------~~~-----------~~ 2348 (2612)
+....++..+.-+....=..-.|-...+-..|+.+|+++ ++-..|++++.-++.= .++ +.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 345555555544333211111122334555566666663 3445666666666321 011 33
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC---Chh
Q 000051 2349 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCM---EDG 2425 (2612)
Q Consensus 2349 ~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~---~~~ 2425 (2612)
.++|.|++.+.+.+...|...+.+|..|+.+.+....-+..+.++++|.+.++-+|..+|....+++..+.... -.+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 46788888888777888999999999999988876656788999999999999889999999999988876543 335
Q ss_pred HHHHHHHHHHhhcCCCC---chhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000051 2426 QLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2612)
Q Consensus 2426 ~~~~~l~~ll~~~~~~~---~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2612)
++..+++.++....+++ ..+|..+..+|+.+.+.-|...+ ..+.++++..+.+.+.|.+.-+|+-|+.+-+.+-.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l-~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL-LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc-ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 68888888876555555 45787788888888887776654 46889999999999999999999999998877543
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00012 Score=93.51 Aligned_cols=479 Identities=16% Similarity=0.140 Sum_probs=287.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCC
Q 000051 1433 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 1512 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~ 1512 (2612)
+...++|.-..+..|+. ...+..++|..++...+++..+|+-.---|-..|+..|+.--- . +..+-+.|.|+|
T Consensus 49 d~~KleAmKRIia~iA~---G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---S-IntfQk~L~DpN 121 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAK---GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---S-INTFQKALKDPN 121 (968)
T ss_pred cHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---e-HHHHHhhhcCCc
Confidence 34566666666655544 3457889999999999999999988777777777765553111 1 345667899999
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHhh-HHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCH
Q 000051 1513 PKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSA 1590 (2612)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~~~~~i~~-ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~ 1590 (2612)
+.+|..|.++|..+-- |-+.+ ++-.+.++..|+..++|. |..++.+ .+..+......+...+...|.|+++
T Consensus 122 ~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpK---LYsLd~e~k~qL~e~I~~LLaD~sp 194 (968)
T KOG1060|consen 122 QLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPK---LYSLDPEQKDQLEEVIKKLLADRSP 194 (968)
T ss_pred HHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHH---HhcCChhhHHHHHHHHHHHhcCCCC
Confidence 9999999998876632 22322 233455677899999983 4444443 2344555556888899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-C-C---------C------
Q 000051 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-G-E---------E------ 1653 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~-g-~---------~------ 1653 (2612)
.|-..|.-+...+|.. .-+-+.+++..+ .+.+.|-+.-=+-..+..|..-++.- . + .
T Consensus 195 lVvgsAv~AF~evCPe--rldLIHknyrkl----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 195 LVVGSAVMAFEEVCPE--RLDLIHKNYRKL----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred cchhHHHHHHHHhchh--HHHHhhHHHHHH----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 9988888888777642 111222333222 22232322222333344443333310 0 0 0
Q ss_pred ----------C-----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1654 ----------N-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1654 ----------~-----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+ ..-++......+.+.... +...+++..-.++. ......+...+++.+. .+..+|...++
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s-VVmA~aql~y~lAP---~~~~~~i~kaLvrLLr-s~~~vqyvvL~ 343 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS-VVMAVAQLFYHLAP---KNQVTKIAKALVRLLR-SNREVQYVVLQ 343 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcH-HHHHHHhHHHhhCC---HHHHHHHHHHHHHHHh-cCCcchhhhHH
Confidence 0 011122222223333322 33333433322222 1233445555666443 45678888889
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
.+..++..-+.-|.||+..+.- .-.|+ ..+..-=++.+.. ......+..+++++...+.+.+.++...+++.
T Consensus 344 nIa~~s~~~~~lF~P~lKsFfv----~ssDp-~~vk~lKleiLs~---La~esni~~ILrE~q~YI~s~d~~faa~aV~A 415 (968)
T KOG1060|consen 344 NIATISIKRPTLFEPHLKSFFV----RSSDP-TQVKILKLEILSN---LANESNISEILRELQTYIKSSDRSFAAAAVKA 415 (968)
T ss_pred HHHHHHhcchhhhhhhhhceEe----ecCCH-HHHHHHHHHHHHH---HhhhccHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 9999988888889999765321 11121 1122111222222 22334577799999988888777777888888
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
+|.....+. ...+.++..|...++..+..|-..|+.+++.+....|..
T Consensus 416 iGrCA~~~~--------------------------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 416 IGRCASRIG--------------------------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHHHHHhhC--------------------------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH
Confidence 887643321 112345555555566667889999999999999988865
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1879 l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
-.+++..+...+-. -.-+.-|....+.+|+.+.. -+.+.|.++..+.+.+.++.+.+|..++..-..+..... ++
T Consensus 464 h~~ii~~La~lldt---i~vp~ARA~IiWLige~~e~-vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~-~~ 538 (968)
T KOG1060|consen 464 HLEILFQLARLLDT---ILVPAARAGIIWLIGEYCEI-VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNI-DQ 538 (968)
T ss_pred HHHHHHHHHHHhhh---hhhhhhhceeeeeehhhhhh-cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEech-hh
Confidence 55555554444311 12345566777778887766 345678888888888999999999887766555433221 11
Q ss_pred HHHhHhHHHHHHHHHh-cCCcHHHHHHH
Q 000051 1959 LLSFMDELIPTIRTAL-CDSILEVRESA 1985 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L-~D~d~~Vr~~A 1985 (2612)
...++..+...- -|.+.++|+.+
T Consensus 539 ----~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 539 ----TKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred ----HHHHHHHHHHHhccCCCcchhHHH
Confidence 345555555544 37778888776
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00018 Score=92.87 Aligned_cols=338 Identities=16% Similarity=0.202 Sum_probs=190.4
Q ss_pred cCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000051 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2612)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~ 1427 (2612)
.+++...+|.+..+...+.... .+++-.+...++++-+...+-...+|+..++..++. ...+.+.|.+-.
T Consensus 80 as~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---EmardlapeVe~ 149 (866)
T KOG1062|consen 80 ASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMARDLAPEVER 149 (866)
T ss_pred cCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhHHhhHHHHH
Confidence 3445556666555555555331 233333444443321111122233344444444443 234577888888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhh
Q 000051 1428 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507 (2612)
Q Consensus 1428 ~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~ 1507 (2612)
.++..++.||+.|..|+-.+....+ +.+..+++...+.|.+++..+-.+++.++..|+...|+.+. ++.+++|.++..
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~i 227 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKI 227 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHH
Confidence 8888999999998887776655433 34566666666677777766666667776666665543322 233333333222
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
|+ ++...-- .|. --++.+.+|.++.-+=.+.+.+..
T Consensus 228 Lk---------------~l~~~~y----------------spe-------------ydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 228 LK---------------QLTNSGY----------------SPE-------------YDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HH---------------HHhcCCC----------------CCc-------------cCccCCCchHHHHHHHHHHHHhcC
Confidence 21 1111000 000 012344455555444445555655
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCCCch-hhHHHHHHH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFP-DLVSWLLDA 1665 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~~g~~~~~-~ll~~L~~~ 1665 (2612)
.+.+....-.++++.++......+.... ..+.+.+...+. .+++..|..|+.+||.+...-... .. --+..|+..
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~Gn--AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~N-irYvaLn~L~r~ 340 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGN--AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNN-IRYVALNMLLRV 340 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchh--HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccc-eeeeehhhHHhh
Confidence 5566666667777777765322222111 113333333333 467889999999999987643222 11 113445555
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1666 LKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1666 L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
++.+.....|.. ..++.+++++++.+|.-++.+.-.+... ..+..++..++.+
T Consensus 341 V~~d~~avqrHr---------------------~tIleCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 341 VQQDPTAVQRHR---------------------STILECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEF 393 (866)
T ss_pred hcCCcHHHHHHH---------------------HHHHHHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHH
Confidence 555554433332 3577788999999999999888777652 4567788888888
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1746 LADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1746 L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
|...+++.+......+..+++.|+++
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 88778888877776666666666553
No 56
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=0.014 Score=82.34 Aligned_cols=463 Identities=18% Similarity=0.173 Sum_probs=259.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
...++..+..+++..|..+.++++.++...+.. +...+...+...+.+ .++..|.+-..++|.+....|+-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 344556667788899999999999999888776 455555655555554 678889999999999988777666667888
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhChhh---hhhhHHHHHHhccCCCcc-hHHHHHHHHHhhhcccccccc
Q 000051 1965 ELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALEDDQTS-DTALDGLKQILSVRTTAVLPH 2039 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~d-~~Vr~~A~~al~~l~~~~g~~~---~~~ilp~Ll~~L~~~~~~-~~al~~L~~il~~~~~~vlp~ 2039 (2612)
+-+..+.....|+. |.|+..+..++..+....|+.. ++..+-.++..|-+..+. ..-..++ ++.+.+
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~-------~R~~~~- 1029 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCY-------NRCFNG- 1029 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhh-------cccccc-
Confidence 88888888888885 5999999999988887766532 233333344444332221 0000111 010100
Q ss_pred cchhhccCCcchhHHHHHHHHHHHhCCChhhhHh---------hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-cc
Q 000051 2040 ILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG---------TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EG 2109 (2612)
Q Consensus 2040 Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~---------~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~ 2109 (2612)
-...+.+..+.|+.+.+... ..+-...=.+..+++.++..++.|+.++-..... -+
T Consensus 1030 --------------~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n 1095 (2067)
T KOG1822|consen 1030 --------------DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN 1095 (2067)
T ss_pred --------------chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc
Confidence 01223344444443333221 1111111123456778888888998887654332 45
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH-----------------H---HHHHHHHHHhc-CCChh
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA-----------------P---NMISTLIVLLS-DSDST 2168 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~-----------------~---~il~~L~~ll~-d~d~~ 2168 (2612)
...+++.+...+.....-.|.+++.++..+..+.......|. . .+=..++.+++ ..|..
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~ 1175 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNK 1175 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHH
Confidence 788999999988877777777777777666543221111111 0 11123344444 45667
Q ss_pred HHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCC------CcCchhhHHHHH------H
Q 000051 2169 TVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL------PKALQPLLPIFL------Q 2236 (2612)
Q Consensus 2169 V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~------p~~l~~ilp~l~------~ 2236 (2612)
.+......|.++......+.+...+....+.+....+- .....+.|... ..+-...++.-. +
T Consensus 1176 l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~~~~~~------s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~ 1249 (2067)
T KOG1822|consen 1176 LLKNILETLSRMLNSLADELLSSWLMLLKDLLQAAEDF------SASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSK 1249 (2067)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhc------cccccccccccccchhhcccchhhHHhhhccccccC
Confidence 77778888888665554444433333333333311110 00001111110 011111222111 1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhh-------------------hhHHHHHHh---cCCCCHhHHHHHHH
Q 000051 2237 GLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-------------------ITGPLIRII---GDRFPWQVKSAILS 2294 (2612)
Q Consensus 2237 ~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~-------------------i~~pLi~~l---~~~~~~~vk~~al~ 2294 (2612)
++.++-+..|.-++.|+..++.... ....|.+- -..-|+|+. +-..+...|..-++
T Consensus 1250 p~~qprW~Trvfaa~cv~r~i~~c~--a~~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~ 1327 (2067)
T KOG1822|consen 1250 PLVQPRWPTRVFAAECVLRIINVCE--AVSAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLE 1327 (2067)
T ss_pred CccccccchHHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHH
Confidence 1223346667778888886665443 22222211 111234431 12236778999999
Q ss_pred HHHHHHHhcCCCcc----------CchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcc-----CChhHHHHHHHHhh
Q 000051 2295 TLSIIIRKGGIALK----------PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALS-----TRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2295 ~L~~L~~~~~~~l~----------p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~-----~~~~~~l~~Ll~~l 2358 (2612)
.|..+....-..-. +|.+|+...+..++.|. +++|-..|.+.....+..+ ..+..+..-|+..+
T Consensus 1328 ~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlrpAF~~dts~dv~a~acqVcS~wigsgv~~dl~dl~rVhqLLvssl 1407 (2067)
T KOG1822|consen 1328 SLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALRPAFSDDTSPDVTAKACQVCSTWIGSGVARDLSDLSRVHQLLVSSL 1407 (2067)
T ss_pred HHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhchhccCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhh
Confidence 99998876533322 34455666666667665 8999999888887775432 22334444555555
Q ss_pred hcCC---------------HHHHHHHHHHHHHHHHh
Q 000051 2359 QVSD---------------AGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2359 ~~~d---------------~~vr~~~l~AL~~vi~~ 2379 (2612)
+... .-.+-++++|+.|+...
T Consensus 1408 ~k~~~g~~~s~~ly~esa~tme~LaiLkAWAEvyv~ 1443 (2067)
T KOG1822|consen 1408 DKSQSGKIISSQLYNESASTMEKLAILKAWAEVYVV 1443 (2067)
T ss_pred cccCccccccceeecchHHHHHHHHHHHHHHHHHHH
Confidence 4321 12356789999998754
No 57
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.63 E-value=0.00067 Score=91.02 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCCh-hHHHHH
Q 000051 2054 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSS 2132 (2612)
Q Consensus 2054 ~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~-~vR~~A 2132 (2612)
...+.+++-.+|..+.+ +-+.+|.++..+...+..+|..++.|++.+......+....++..++..+++.+. ..|+.+
T Consensus 797 ~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a 875 (1549)
T KOG0392|consen 797 FEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGA 875 (1549)
T ss_pred HHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhH
Confidence 34555666666777777 7788899999999999999999999999998876666677778888888877544 455566
Q ss_pred HHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2133 AYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2133 ~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
...++.+.......+.+|.+-++..|+..++|..+.||.++-.++..++...+-
T Consensus 876 ~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 876 DELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 677777788777888899999999999999999999999999999999887653
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=3.1e-05 Score=99.45 Aligned_cols=385 Identities=17% Similarity=0.214 Sum_probs=231.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHH
Q 000051 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 2154 (2612)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~i 2154 (2612)
+.+.+.+-|+..+.-+...|+.+++.++ +.+-.+.+.|++.+.+++.++.+|.-|+.|...+....+.-. ..+
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHh
Confidence 4455556677777777777777777664 457778899999999999999999999999998887765333 344
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc------cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCch
Q 000051 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2612)
Q Consensus 2155 l~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~ 2228 (2612)
+.....++.+.+..|..++..-+..+++..+. +..+.++..+++.....- .....+.|.+ .
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~y--------speydv~gi~-----d 247 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGY--------SPEYDVHGIS-----D 247 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCccCccCCC-----c
Confidence 55566677788888888888777888776442 234444444444332110 1112344433 3
Q ss_pred hhHHH----HHHHHhcCCHHHHHHHHHHHHHHHHhcChh------hhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000051 2229 PLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQ------SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2612)
Q Consensus 2229 ~ilp~----l~~~L~~~~~~~r~~aa~~L~~li~~~~~~------~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~ 2298 (2612)
|++.+ ++..+..++++..+.....|+.++.++... -+-.-|..| +.=+.+...|..|..+||.
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI-------~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI-------MDIRSNSGLRVLAINILGK 320 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH-------HhccCCchHHHHHHHHHHH
Confidence 44443 334556677776677777777777665321 111111111 1112244566666666665
Q ss_pred HHHhcCCCcc---------------CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCH
Q 000051 2299 IIRKGGIALK---------------PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDA 2363 (2612)
Q Consensus 2299 L~~~~~~~l~---------------p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~ 2363 (2612)
++..-...++ .-+.+-+.+++.||.|++..+|.+|..-+-.|+. ..++..++.+|+.-+...|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccH
Confidence 5432222111 1234567789999999999999999987777644 56888999999998877776
Q ss_pred HHHHHHHHHHH------------------HHHHhcCCCcChHHHHHHHHHHHHhhcCC---------------------C
Q 000051 2364 GIREAILTALK------------------GVLKHAGKSVSSAVKIRVYSVLKDLVYHD---------------------D 2404 (2612)
Q Consensus 2364 ~vr~~~l~AL~------------------~vi~~~g~~~~~~~~~~i~~~L~~~l~~~---------------------~ 2404 (2612)
..|.....-+. .|+..+|+-+.......++.++-+.+.+. +
T Consensus 400 ~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~ 479 (866)
T KOG1062|consen 400 DFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQ 479 (866)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhh
Confidence 66655544444 44555566555555566666555542221 2
Q ss_pred HHHHHHHHHHHHHHHhh------------CChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2405 DHVRVSAASILGIMSQC------------MEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~------------~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+..-..+.=|||.-+.. ..+.++...+.+++....+. ...+..+..++..+....+.. .++
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~-~~tk~yal~Al~KLSsr~~s~------~~r 552 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSD-STTKGYALTALLKLSSRFHSS------SER 552 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhhcccc------HHH
Confidence 22334455677765521 12234666677766554433 444544444554443333222 456
Q ss_pred HHHHHHhhhccCChhHHHhHHH
Q 000051 2473 ILDRLKSSLKDEKFPLREASTK 2494 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~ 2494 (2612)
+-..|.+...+-+..++..|+.
T Consensus 553 i~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 553 IKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHhcccccHHHHHHHHH
Confidence 6666666667777778777765
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.61 E-value=0.014 Score=80.70 Aligned_cols=154 Identities=17% Similarity=0.230 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChh
Q 000051 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWR 1473 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~ 1473 (2612)
.+..+..++-.++...+ |..-+...+..++..++.+...+|..|..|+..+++.=+.- ..+.+...+...+.+....
T Consensus 793 d~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred cchhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhH
Confidence 34455555555554332 33333444555667788999999999999999987643322 2255666667788899999
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCChh
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDH 1552 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~~~ 1552 (2612)
+|.+|++++|.+.-+.|+...+++..|.. -..|+...||+.+.+-+..++...++ +.+..++-.++....|....
T Consensus 871 VREAaldLvGrfvl~~~e~~~qyY~~i~e----rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQYYDQIIE----RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHh----hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 99999999999988888877666666554 56789999999999999999876433 12344444555555666554
Q ss_pred HH
Q 000051 1553 TK 1554 (2612)
Q Consensus 1553 ~r 1554 (2612)
+.
T Consensus 947 I~ 948 (1692)
T KOG1020|consen 947 IK 948 (1692)
T ss_pred HH
Confidence 43
No 60
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.60 E-value=0.012 Score=81.38 Aligned_cols=260 Identities=17% Similarity=0.193 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cC---ChhHHHHHHHHh---hh
Q 000051 2287 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST---RVDPLVGDLLSS---LQ 2359 (2612)
Q Consensus 2287 ~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-~~---~~~~~l~~Ll~~---l~ 2359 (2612)
.+...++..+...+-.++..-..|+..|-..+.+.+-..+-..-..|..|+|.++.- .. .+...+...... ++
T Consensus 1095 ~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k 1174 (1692)
T KOG1020|consen 1095 QFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIK 1174 (1692)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444444457777888888877766667777888999999652 11 122233333332 22
Q ss_pred cC---C--H---HHHHHHHHHHHHHHHhc--------CCC---cChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2360 VS---D--A---GIREAILTALKGVLKHA--------GKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2360 ~~---d--~---~vr~~~l~AL~~vi~~~--------g~~---~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
.+ + . ..-...+..++-++.+. |.. ..+...+.++.+|.-..++.+.++|..|...+|.++.
T Consensus 1175 ~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1175 SSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred hccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 22 1 0 11122334444444432 111 1235667888888878888889999999999999997
Q ss_pred hCChh----HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHH---------------------------hhCCccccC---
Q 000051 2421 CMEDG----QLADLLQELLNLASSPSWAARHGSVLVFATFL---------------------------RHNPSAISM--- 2466 (2612)
Q Consensus 2421 ~~~~~----~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l---------------------------~~~p~~~~~--- 2466 (2612)
..|.- ++..++.++++....+. ..+.-+...+...+ ..+. ....
T Consensus 1255 ~hp~l~~~~~v~nly~~ila~~n~~~-~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~s-g~~s~~~ 1332 (1692)
T KOG1020|consen 1255 QHPSLFTSREVLNLYDEILADDNSDI-KSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSS-GMGSSDG 1332 (1692)
T ss_pred hCchhhhhHHHHHHHHHHHhhhcccH-HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhccccc-ccccccc
Confidence 76642 33344444443211111 11111111111111 0000 0000
Q ss_pred -CchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2467 -SPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2467 -~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
.+....+++.+.+.+-+.+..+|..|+..+.-+|..+. . .+...++.++..-.|.....|..|...+.-+-+
T Consensus 1333 ~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGL-V------hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1333 VSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGL-V------HPVHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccC-C------CccchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 11334455566666677888999999998877776543 2 246788888888889999999999999999888
Q ss_pred hCchhhhhhH
Q 000051 2546 ANPSAIMVHV 2555 (2612)
Q Consensus 2546 ~~~~~v~~~l 2555 (2612)
+.+..|...+
T Consensus 1406 kY~gfv~sk~ 1415 (1692)
T KOG1020|consen 1406 KYEGFVFSKL 1415 (1692)
T ss_pred hhHHHHHHHH
Confidence 8777765433
No 61
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.59 E-value=0.02 Score=85.56 Aligned_cols=459 Identities=20% Similarity=0.251 Sum_probs=215.5
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhchh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----SSSSERRQVAGRALGELVRKLGER 1919 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~----~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2612)
..+..++..+.|....++.++...++.++...|..+-+.+.. ..+..++ +...........-+..++......
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~---~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK---TLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH---HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 455556777899999999999999999988778544444433 3333333 222222233333333333322222
Q ss_pred hhhhHHH---HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Q 000051 1920 VLPSIIP---ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1920 ~l~~llp---~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~-d~~Vr~~A~~al~~l~~~ 1995 (2612)
+.+.+-| .+...+.+++..+-..+...+++++.. ++..+..+.+.+++.+.+.+.|. +..-|.++..+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v-~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAV-GGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHh-ccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 2333323 333345566666667777888888664 44555556667777777777765 445567778888888766
Q ss_pred hChhhhhhh--HHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHh
Q 000051 1996 AGMQAIDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLG 2073 (2612)
Q Consensus 1996 ~g~~~~~~i--lp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~ 2073 (2612)
.|.. +.++ .|.+++.|.+ ++...-++..+..++..+. .+|. +.||..
T Consensus 721 ~~~~-v~p~~~~P~ll~~l~~----------------------------~~~te~~~~ir~~~v~~~g-~~g~-~d~~~~ 769 (2341)
T KOG0891|consen 721 TGYV-VDPYLDYPELLDILIN----------------------------ILKTEQSSTIRREAIRLLG-LLGA-LDPYKH 769 (2341)
T ss_pred cceE-ecccccChHHHHHHHH----------------------------HHhHhhhhHHHHHHHHHhh-hhcc-cchhHH
Confidence 5541 1111 2222222211 0000000111111222221 1121 122222
Q ss_pred hHHHHH--HHhcCC-CCH-HHHH-HHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHHhcccch
Q 000051 2074 TILPAL--LSAMGD-DDM-DVQS-LAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2074 ~il~~L--l~~L~~-~~~-~vr~-~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~-~A~~~L~~l~~~~~~~~ 2147 (2612)
...... .+.... ... ..+. ........+ ++-....-+..++..+++....... ..+.+.-.++...+.+.
T Consensus 770 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~----~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~ 845 (2341)
T KOG0891|consen 770 KVTEGTSASKISSEQIKSDIDISLLESGVNPSN----DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKC 845 (2341)
T ss_pred HHHhhhhhHhhhhccccccchHHHHHhhhhhhh----hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccch
Confidence 211111 111110 000 0110 000000000 1111111222444555554333222 33444555566666677
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
..+.+.+++.++..........+.....-+.... +-.+.++
T Consensus 846 ~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~---------------------------------------~~~~~h~ 886 (2341)
T KOG0891|consen 846 VLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLV---------------------------------------AIVRQHI 886 (2341)
T ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhh---------------------------------------hccchhH
Confidence 7777887777776554222111111110000000 0001112
Q ss_pred hhhHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC
Q 000051 2228 QPLLPIFLQGLISG---SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 2304 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~---~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~ 2304 (2612)
.+.++.....+... +-+........+.++....+ ..++.|++....-.+... .......+......+..+ ...|
T Consensus 887 ~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~-~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~-~~~~ 963 (2341)
T KOG0891|consen 887 RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALG-GEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSL-QKFG 963 (2341)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhhccchheee-cccccchHHHHHHhhHHH-HhcC
Confidence 22222222222111 12222233344445555554 567777766654444444 222222333222222222 2234
Q ss_pred CCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc---cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2305 IALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSAL---STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2305 ~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~---~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
.....+..-+.+..++.+.++ ...+|..+..+.+.+... ..........++..+..+ .+++..++..+..++..
T Consensus 964 ~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~ 1042 (2341)
T KOG0891|consen 964 SNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQ 1042 (2341)
T ss_pred ccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHh
Confidence 445556666778888888887 788999999999988431 111122233345555555 77888888888888887
Q ss_pred cCCCc
Q 000051 2380 AGKSV 2384 (2612)
Q Consensus 2380 ~g~~~ 2384 (2612)
.|...
T Consensus 1043 ~~~~~ 1047 (2341)
T KOG0891|consen 1043 LGKDF 1047 (2341)
T ss_pred hcCce
Confidence 77654
No 62
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.58 E-value=0.011 Score=77.93 Aligned_cols=194 Identities=22% Similarity=0.256 Sum_probs=145.0
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc-------------hhccHHHHHHHHHHHhcCCChhHHHHHHHH
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAPNMISTLIVLLSDSDSTTVAAAWEA 2176 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-------------~~~~~~~il~~L~~ll~d~d~~V~~~a~~a 2176 (2612)
..++-..++..+++ +.+-..++.++..+....+.. -..++.++++.+...+......++..-..+
T Consensus 813 s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~ 890 (1030)
T KOG1967|consen 813 SSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEA 890 (1030)
T ss_pred cchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHH
Confidence 34555666666665 333445566665554322211 123567888888888876677788888889
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000051 2177 LSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGEL 2256 (2612)
Q Consensus 2177 L~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~l 2256 (2612)
|+.++++.|++.+ + +.+..++|.++++|.-.+.++|..+..++...
T Consensus 891 LshVl~~vP~~vl----------------------------l------p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 891 LSHVLTNVPKQVL----------------------------L------PQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHHHhcCCHHhh----------------------------c------cchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 9988887776321 1 23345789999999989999999999999999
Q ss_pred HHhcChhhhhhchhhhhHHHHHHhcCCCC--HhHHHHHHHHHHHHHHhcCC-CccCchHHHHHHHHHHhcCCCHHHHHHH
Q 000051 2257 IEVTSEQSLKEFVIPITGPLIRIIGDRFP--WQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQDSTRTVRSSA 2333 (2612)
Q Consensus 2257 i~~~~~~~l~p~v~~i~~pLi~~l~~~~~--~~vk~~al~~L~~L~~~~~~-~l~p~lpqL~~~~~k~L~d~~~~vR~~A 2333 (2612)
....+ .-...|+..+++-++.+-.+..+ ..||..|+++|+.|.+..|. .+.||-|+.++.+.++|.|+.+-||..|
T Consensus 937 l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 937 LTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 88776 56778888888777766555432 57999999999999996654 5789999999999999999999999999
Q ss_pred HHHHHHH
Q 000051 2334 ALALGKL 2340 (2612)
Q Consensus 2334 a~aLg~L 2340 (2612)
+.+=+..
T Consensus 1016 v~tR~~W 1022 (1030)
T KOG1967|consen 1016 VDTRQNW 1022 (1030)
T ss_pred HHHhhhh
Confidence 9886665
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5.8e-06 Score=95.84 Aligned_cols=341 Identities=14% Similarity=0.092 Sum_probs=216.6
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hH-
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI- 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i- 1535 (2612)
...+++-.+++.+......++..+|.++-... +.+...+..+=+.+.+.+.| +.+||..++.|+.+++..-.++ .+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhh
Confidence 34455556777788888999999998885432 33444556665666777777 7789999999999998764433 11
Q ss_pred -hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1536 -ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1536 -~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~-~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
..-+..+.+.-...+..++ .+...|...+....-- .-..+--+|++...+...+..++..++.++++++-.-...+.
T Consensus 165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2223334443333334443 5666665422211100 011133468888999999999999999999998753222244
Q ss_pred chhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000051 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-----~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~ 1687 (2612)
+..--|.++|.+.+++.++++.++..|..+++.++.. .+|. ..-+|.+++.++++... .-.....|+-.+.-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisi 321 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISI 321 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhccc
Confidence 5555678999999999999999999999999998763 2232 23467888888766533 33344445544433
Q ss_pred HhChhhH---HhHhHHHHHhccCC-ChhhHhHHHHHHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHH
Q 000051 1688 ALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGH 1762 (2612)
Q Consensus 1688 ~~g~~~l---~~llp~l~~~~~~~-~~~vR~~~~~~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~ 1762 (2612)
.-+.+.+ ..++..++..+.-. +.+.+-.+...+..++.........+.+ ..+|.+...+-|..-.+|...-.++.
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 3332221 23455566666544 4557888888888888755433333333 37788888888888888877666655
Q ss_pred HHHHHhhh-c-hhh-hhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1763 VLVEHYAT-T-SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1763 ~lv~~~~~-~-~i~-~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
.+.-+-.. . ..+ -++|.+....++++..+|-.+...++.+.
T Consensus 402 ~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 402 QLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 54321111 1 111 25666677778888888888888887763
No 64
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.7e-06 Score=99.14 Aligned_cols=319 Identities=16% Similarity=0.161 Sum_probs=212.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
-++.+.+.|.. +|......|.+-+..+.+.- ++..+....+++.+.+.+.........-.|..++..++.+-...-
T Consensus 72 elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 72 ELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 44667776664 45777888888887777532 233333346677777777433234455578888888887665322
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhhcCCCh--hhHHHHHHHHHHHHh
Q 000051 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~ia~ 1487 (2612)
.-.+. ..+|.+++.+.+++..||+.+..+++.++..-+.. -. ...+.+++..+.+... ..-+.+.+.|..++.
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 22222 57899999999999999999999999997754332 11 4456677777665543 556778899999997
Q ss_pred h-CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHh-----hHHHHHHhhcCCCChhHH-HHHHHH
Q 000051 1488 C-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-----SLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2612)
Q Consensus 1488 ~-~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~-----~ivp~Ll~~l~d~~~~~r-~al~~L 1560 (2612)
+ .|.--...+...+|.|.+++...+++|-.-|++|+.-+...- +..++ .+.+.|.+.+.+|+..+. -++..+
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 5 333333456778888999998889999999999999887653 33333 345678888888877665 466655
Q ss_pred HhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHH
Q 000051 1561 LQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1561 ~~~~~~~~i~~~~l--~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
+..-.-.+.....+ .-.++.+...+.++...+|+.+|..++++.. +..+.+...+ ..++|.|..+|...+..+|+
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 54211111111100 1245566666777777999999999999865 3333333333 25889999999988899999
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHH
Q 000051 1638 VAARAIGSLIRGMGEENFPDLVSWL 1662 (2612)
Q Consensus 1638 ~A~~aL~~L~~~~g~~~~~~ll~~L 1662 (2612)
.|..++...... .-..++++..|
T Consensus 388 EACWAisNatsg--g~~~PD~iryL 410 (526)
T COG5064 388 EACWAISNATSG--GLNRPDIIRYL 410 (526)
T ss_pred HHHHHHHhhhcc--ccCCchHHHHH
Confidence 999998876543 22344555444
No 65
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.56 E-value=0.013 Score=77.32 Aligned_cols=268 Identities=21% Similarity=0.144 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhCC-ChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc----HHHHHHHHHhhc--CCCCh
Q 000051 2054 AHALGALAEVAGP-GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG----VESLVSELLKGV--GDNQA 2126 (2612)
Q Consensus 2054 ~~al~~La~~~g~-~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~----l~~ll~~Ll~~l--~~~~~ 2126 (2612)
.+|+..+...++. -+.+.++.|+..|+....+.+.++-....+++..++.. +.+. -..+.|..+... .++||
T Consensus 509 i~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP 587 (1005)
T KOG2274|consen 509 ISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDP 587 (1005)
T ss_pred HHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCc
Confidence 3444444444443 36788899999999988888888877788888777652 2211 122333333322 24567
Q ss_pred hHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Q 000051 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAIST 2202 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d----~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~ 2202 (2612)
.+-..+-.++-.+++. ...+.++....++.++..++-++ .....-+...|..+++..+...-..+
T Consensus 588 ~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l---------- 656 (1005)
T KOG2274|consen 588 QVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL---------- 656 (1005)
T ss_pred hHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH----------
Confidence 6666666677666653 34567788888899988887554 45566677777777766554411111
Q ss_pred hhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcChhhhhhc------hhhhhHH
Q 000051 2203 SRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL-ISGSAELREQAALGLGELIEVTSEQSLKEF------VIPITGP 2275 (2612)
Q Consensus 2203 ~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L-~~~~~~~r~~aa~~L~~li~~~~~~~l~p~------v~~i~~p 2275 (2612)
+...+|.+.+.. .+++.+.-+.+-+|+..++..+.++...-+ +-.|...
T Consensus 657 ------------------------~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV 712 (1005)
T KOG2274|consen 657 ------------------------ICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQV 712 (1005)
T ss_pred ------------------------HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHH
Confidence 112344444443 455677778889999999877543222111 1133444
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000051 2276 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2612)
Q Consensus 2276 Li~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L 2354 (2612)
+-+.|+.+.+......+-..+..|..+.|..+.|-++++.+.+++-++.. ...+-..-...+.+|+. +.+++++..|
T Consensus 713 ~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL 790 (1005)
T KOG2274|consen 713 LSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFL 790 (1005)
T ss_pred HHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHH
Confidence 55666554343333334444456677888888888999999888877764 66777777777777744 7889999999
Q ss_pred HHhhh
Q 000051 2355 LSSLQ 2359 (2612)
Q Consensus 2355 l~~l~ 2359 (2612)
.+...
T Consensus 791 ~Slp~ 795 (1005)
T KOG2274|consen 791 SSLPG 795 (1005)
T ss_pred HhCCC
Confidence 88443
No 66
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=5.8e-06 Score=95.85 Aligned_cols=392 Identities=15% Similarity=0.145 Sum_probs=236.1
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-------ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-------EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-------~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
.....++-.+..+++.++..+..+++.+....+. .+++.++.+ .+ .++..+|..++.|+..+.......
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~q---mm-td~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQ---MM-TDGVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHH---hc-CCCcEEEeeehhhhhhhhccccch
Confidence 3444555566788888888888888877655432 234444333 33 445678888888888886542222
Q ss_pred hhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcC
Q 000051 2147 LVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKA 2226 (2612)
Q Consensus 2147 ~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~ 2226 (2612)
..-.....+..+.++-+..|..|+.++.++|..+...-.. ++.+..
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En----------Rr~LV~------------------------ 206 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN----------RRVLVH------------------------ 206 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh----------hhhhhc------------------------
Confidence 1111223455566666778889999999999887653211 111110
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-ChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVT-SEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~-~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2612)
..-+|.+...+.+++.+++..+..+|+.+.-.. ....+...-+.+++.|+..+.+. ++.+|..|-.+|+.+......
T Consensus 207 -aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 -AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred -cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchh
Confidence 113678888899999999999999999886321 11123333355777788888775 788999999999988754321
Q ss_pred CccCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC----hh-HHHHHHHHhhhcCC-HHHHHHHHHHHHHHHH
Q 000051 2306 ALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR----VD-PLVGDLLSSLQVSD-AGIREAILTALKGVLK 2378 (2612)
Q Consensus 2306 ~l~p~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~----~~-~~l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~ 2378 (2612)
. .+.+ ..-+|.+++.++++.-..-.....|+.++.....+ ++ .++..|+..+...| .+++-.+...|+.+..
T Consensus 285 q-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 Q-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred h-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 1 1111 11245677788888666666777788777332211 22 36777999998766 5588888888888765
Q ss_pred hcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHh
Q 000051 2379 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 2458 (2612)
Q Consensus 2379 ~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~ 2458 (2612)
....+...-.-...++.+.+++.|...++|.-...|+..|+....... .+++
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~--~lld-------------------------- 415 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKE--ALLD-------------------------- 415 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHH--HHhh--------------------------
Confidence 443333222223345556667777778888888888887775433210 0000
Q ss_pred hCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhc--------cCCCCchhhHHHHHHHHhhcCCCCH
Q 000051 2459 HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQ--------SGPANTTVVVDILASVVSALHDDSS 2530 (2612)
Q Consensus 2459 ~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~--------~~~~~~~~l~~~l~~~~~~l~~~~~ 2530 (2612)
. -+++.++....+.+.++|.||+.|++.+-..... -.|. ..+...+..|+ .++..
T Consensus 416 --------~----gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl---~S~~~ 478 (550)
T KOG4224|consen 416 --------S----GIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFL---ASHEL 478 (550)
T ss_pred --------c----CCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHH---hhhHH
Confidence 0 0123334445556666777777776665433210 0111 12333444443 36677
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000051 2531 EVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
.+|-.+..++..+++.+-..+
T Consensus 479 tf~hia~wTI~qLle~h~~~~ 499 (550)
T KOG4224|consen 479 TFRHIARWTIQQLLEDHDLPL 499 (550)
T ss_pred HHHHHHHHHHHHHHHhCCccH
Confidence 888888888888888664443
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.50 E-value=8.6e-06 Score=107.90 Aligned_cols=302 Identities=17% Similarity=0.242 Sum_probs=201.3
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--
Q 000051 1577 LVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-- 1653 (2612)
Q Consensus 1577 iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-- 1653 (2612)
+++.+...++. ...+.|..|...+..++..+.+ ..-++.++|.+..++.|+...||..|..+|..+...+.+-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 44444444332 2357788899988888876544 3357889999999999999999999999999988765432
Q ss_pred ----Cc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHh--ccCCChhhHhHHHHHHHHhhhh
Q 000051 1654 ----NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--CSHQRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1654 ----~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~--~~~~~~~vR~~~~~~l~~L~~~ 1726 (2612)
.| +-++|.|-..+.+.....+|...|.+|+.++...-. +-+.-..+-.. .++++.+. .+.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--Fle~~q~~~~~g~~n~~nset----------~~~- 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--FLELTQELRQAGMLNDPNSET----------APE- 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH--HHHHHHHHHhcccccCccccc----------ccc-
Confidence 23 345677765555535566888888888887654321 11111111111 23333320 000
Q ss_pred hccchhhhH----HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhch-hhhhHHHHhhccCCCchHHHHHHHHHHHH
Q 000051 1727 LGVQFQNYL----QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1727 ~g~~f~p~l----~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~-i~~llp~L~~~l~d~~w~vR~~a~~ll~~ 1801 (2612)
..+..++ ..+-......+.|+.+.||.+-++.+..++..+|... -+.+++.+...++|++|+.|.+-.+-+.
T Consensus 566 --~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~- 642 (1431)
T KOG1240|consen 566 --QNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV- 642 (1431)
T ss_pred --cccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc-
Confidence 1122222 2233455667889999999999999999999998764 4669999999999999999986554433
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChh-hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~ 1880 (2612)
|++. .+|.. .-+-+++.|..++.|....|-..|+..+..+++.. ---+
T Consensus 643 ------gvsi------------------------~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K 691 (1431)
T KOG1240|consen 643 ------GVSI------------------------FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRK 691 (1431)
T ss_pred ------ceEE------------------------EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccch
Confidence 3211 01111 01235666677899999999999999999999842 1113
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-----hhhhHHHHHh
Q 000051 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILS 1929 (2612)
Q Consensus 1881 ~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~ 1929 (2612)
+++-.+++.+..+|.+++.-+|..++..+..+.+.++.. +.|.+-|.+.
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 556667777777789999999999999999998887653 3455555544
No 68
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=0.014 Score=74.95 Aligned_cols=276 Identities=18% Similarity=0.288 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHH---hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh--------h--hhhchhH
Q 000051 1435 AVREAAECAARAMMS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--------S--QCLPKIV 1501 (2612)
Q Consensus 1435 ~VR~aa~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l--------~--~~L~~iv 1501 (2612)
.+|+.--.-.+.+.. .+--..+...+...+..-.+.+|..-..|+..+..++++.+..- + ..+..+.
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 466654333333322 22222345555555555567789999999999999998754321 1 1122334
Q ss_pred HHHh--hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1502 PKLT--EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1502 p~L~--~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+.+. +++.++|+.|+-.-.+.+.+-.+.+.. -...+|.++.+.-|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~--esq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFST--ESQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--chhhhHHHHHHHccc------------------------------
Confidence 4333 355677888876666665554433321 012344444433322
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHH------------HHHHHHHHHHHH
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV------------RSVAARAIGSLI 1647 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V------------R~~A~~aL~~L~ 1647 (2612)
+|+.+.+.+||..|.-....+.+.+. +.+.||.+.++..+..+|..+.+.. +-...+++|-+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 34444555666666666655555432 3566666666666666663211111 112222223222
Q ss_pred hhhC--CC----Cchh---------hHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHhCh-----------hhHHhH
Q 000051 1648 RGMG--EE----NFPD---------LVSWLLDALKSDNSN----VERSGAAQGLSEVLAALGT-----------VYFEHI 1697 (2612)
Q Consensus 1648 ~~~g--~~----~~~~---------ll~~L~~~L~~~~~~----~~R~~aa~~L~~i~~~~g~-----------~~l~~l 1697 (2612)
..-. .+ +... .+-.+...+.++... ..-..++.+++...+++.. ..+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 2100 00 1111 111111222222221 2234455555555554321 123444
Q ss_pred hHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1698 LPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1698 lp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
++.++..+. .....+|.+.-..++++..++|++.-||+++.+..+++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 444433332 23556777777777777777787777888877777776643
No 69
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.49 E-value=1.3e-05 Score=106.41 Aligned_cols=303 Identities=19% Similarity=0.202 Sum_probs=207.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
++..+..+++.-+-.+.|.+|+..+..++....+ +..+..++|.++.++.|+.+.||-.|..++-.+.....+.
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~---- 496 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDI---- 496 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC----
Confidence 4555666666655567788899988888877653 4567789999999999999999999988877664322111
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
.|....-+-.-|+|.|-.++.| ....||-+-+.+|+.+++... .+..
T Consensus 497 ------------------------------~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 497 ------------------------------PPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred ------------------------------CcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 0111001113467888888999 677899999999999987541 1111
Q ss_pred HHHHHHhh--cCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1538 LVPTLLMG--LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1538 ivp~Ll~~--l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
....+-.. +++|+..+. ... ....+...
T Consensus 545 ~~q~~~~~g~~n~~nset~-------------------------------------------------~~~-~~~~~~~~ 574 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETA-------------------------------------------------PEQ-NYNTELQA 574 (1431)
T ss_pred HHHHHHhcccccCcccccc-------------------------------------------------ccc-ccchHHHH
Confidence 11111111 222222100 000 00011111
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2612)
....+-.....++.|+.+-||.+-.+.|+.|+..+|.+.- +-+++.|+..|.+. +...|....+.+..++--+|....
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG~rs~ 653 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVGWRSV 653 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEeeeeH
Confidence 2222334445667788899999999999999999998754 45677777777544 677888888888888777787744
Q ss_pred -HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc
Q 000051 1695 -EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2612)
Q Consensus 1695 -~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~ 1771 (2612)
+.++|-+.+.+.|+.+.|-..++.++..|++. |--=.+++-+++..++..|.+++..||.+++..+..+...++.-
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 56789999999999999999999999888864 21114788889999999999999999999998888877776553
No 70
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.016 Score=75.02 Aligned_cols=220 Identities=18% Similarity=0.219 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc-----CCCCHHHHHHH-HHHHHHHHHhhcHH-hH-----HhHHH
Q 000051 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAA-ECAARAMMSQLSAQ-GV-----KLVLP 1461 (2612)
Q Consensus 1394 ~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l-----~D~~~~VR~aa-~~al~~i~~~l~~~-~v-----~~ilp 1461 (2612)
+.|-.|-..+-.+.+..+..+.|++..++....++. .|-+.-+++.| ..+.+..+..+++. .+ ..++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 466667777777777777777777777766656665 34445555544 34444444444333 12 44455
Q ss_pred HHHhhhcCCChhh-HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcC--ChhHhh
Q 000051 1462 SLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIAS 1537 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~-r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~--~~~i~~ 1537 (2612)
.+- .+..+.|. |+-.+.++|.+..- ++....-+.+...++++++|. +..||-++.+++.-..+... ...+.+
T Consensus 492 El~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp 567 (978)
T KOG1993|consen 492 ELA--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLP 567 (978)
T ss_pred Hhh--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhh
Confidence 544 22334433 66677888888752 222222345566778889998 66789999999998887653 111222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
++|.+...+ -.+++... +-++|......++.+...++. .+.||.
T Consensus 568 ~lenlf~~l----------------------------fkll~~~~------e~Dtk~~VL~~ls~lI~r~~e--~I~P~~ 611 (978)
T KOG1993|consen 568 YLENLFVLL----------------------------FKLLKAVE------ECDTKTSVLNLLSTLIERVSE--HIAPYA 611 (978)
T ss_pred hHHHHHHHH----------------------------HHHHHHHh------hhhhHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 222222110 00111111 135566666666666665432 455776
Q ss_pred hhhHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1618 GLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1618 ~~ll~~L~~~L~--d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..++..+-.+-. ...+-.|.+...++..++.++|.+
T Consensus 612 ~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 612 STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 666655554443 356789999999999999999976
No 71
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.43 E-value=6.5e-06 Score=110.88 Aligned_cols=340 Identities=17% Similarity=0.201 Sum_probs=223.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2612)
.+..+...+.-..+..-..++.++..++...|... ...+++ .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34445555556667777788888888888777542 122222 112222 234677888888888777776522111
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCC---ChhHHHHHHHHHHHH----------
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE---NESVRDAALGAGHVL---------- 1764 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~---~~~VR~~Al~al~~l---------- 1764 (2612)
.+......++.+..+.|..-..+...--+.......++ +..-+......+...
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 13334444555554444322222222222222222221 111000000000000
Q ss_pred -HHHh-hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhH
Q 000051 1765 -VEHY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2612)
Q Consensus 1765 -v~~~-~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~ 1842 (2612)
...+ ..+..+.+.|.+...+.+++|+.|.++++-+...+..-.+. -... +.
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----------~~~~-----------------~~ 293 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----------IVKG-----------------YT 293 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----------cccC-----------------cc
Confidence 0001 11234557788899999999999999999888887542200 0000 11
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhh
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~ 1922 (2612)
+.+.-.+-....|.+..|-..|+.++..++...+..++.|....++.++.++.+.....|.....++..++.. ..+.
T Consensus 294 ~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns---~~l~ 370 (815)
T KOG1820|consen 294 GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS---TPLS 370 (815)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc---ccHH
Confidence 1122222334689999999999999999999999889999999999999999999999999999999888873 2466
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~-l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
.+.+.+..++++.+|..|..+..++...+...++.. ...-..+++|.+....+|.+.+||.+|..+++.+++.+|...+
T Consensus 371 ~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 371 KMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 788888899999999999999999998888777432 2445689999999999999999999999999999999998766
Q ss_pred hhhHHH
Q 000051 2002 DEIVPT 2007 (2612)
Q Consensus 2002 ~~ilp~ 2007 (2612)
..++..
T Consensus 451 ~k~L~~ 456 (815)
T KOG1820|consen 451 KKLLKD 456 (815)
T ss_pred HHHHHh
Confidence 655443
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0058 Score=78.16 Aligned_cols=257 Identities=14% Similarity=0.176 Sum_probs=165.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
.+-.+++-+.++..+.+.-+.+|.-|+..+..+|...+.. +...++.|..-++|+|+.|+.+|...++.+.+..|+
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 3446788899999999999999999999999888765544 445566677778999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCC-c----ccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGG-P----ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS 2261 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~-~----~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~ 2261 (2612)
.+++ +-|.+...+.+.... |..- . ..+... -|+--.-++|.+.+.+.+.+. .....+|+..++...=
T Consensus 215 nyL~-LAP~ffkllttSsNN----WmLIKiiKLF~aLtpl-EPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 215 NYLQ-LAPLFYKLLVTSSNN----WVLIKLLKLFAALTPL-EPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSM 286 (877)
T ss_pred cccc-ccHHHHHHHhccCCC----eehHHHHHHHhhcccc-CchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehh
Confidence 8764 222222222221100 1000 0 001100 133334466666666654432 1234567777775510
Q ss_pred hhhhhhchh--hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 2262 EQSLKEFVI--PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 2339 (2612)
Q Consensus 2262 ~~~l~p~v~--~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~ 2339 (2612)
......+.. ++.-.=+|.+-+..+++.|...+.+++.++..-+..+ ..-...+++||.|.++.+|.+|...|-.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V----qa~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV----QAHKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH----HHhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 011111111 1111112344344588999999999999987655433 3345678899999999999999988776
Q ss_pred HHhccCChhHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHhc
Q 000051 2340 LSALSTRVDPLVGDLLSSLQVSD-AGIREAILTALKGVLKHA 2380 (2612)
Q Consensus 2340 L~~~~~~~~~~l~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~ 2380 (2612)
++. ..++..++..|+..+..++ ...|..++.-+-+++...
T Consensus 363 mVs-kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 363 MVS-KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred Hhh-hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 643 3677888899998886555 467777776666666543
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.35 E-value=0.0036 Score=77.39 Aligned_cols=289 Identities=14% Similarity=0.059 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Q 000051 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2612)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~ 1919 (2612)
.+..+.+-|-..++|.-..|.-.+++.+.++.... +. +++...+..+-.+|.++....|..|.+.|.++.-..+..
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k 337 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK 337 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce
Confidence 33444444444567777778888888887776533 32 456667777888889999999999999999998776554
Q ss_pred hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1920 ~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
+ ...-+.+...+.|.+..+ +.+++..++..-..+.+ +.++..+...+.|-....+..+..|+.+++-.+..
T Consensus 338 v-~vcN~evEsLIsd~Nr~I---styAITtLLKTGt~e~i----drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~- 408 (898)
T COG5240 338 V-SVCNKEVESLISDENRTI---STYAITTLLKTGTEETI----DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS- 408 (898)
T ss_pred e-eecChhHHHHhhcccccc---hHHHHHHHHHcCchhhH----HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH-
Confidence 2 122333455555655443 45566666554333333 33444444444444444445555666666554433
Q ss_pred hhhhhHHHHHHhccCCCc---chHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHH
Q 000051 2000 AIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L~~~~~---~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 2076 (2612)
-...++..|.+.|.++.. ..++.+++..++..- | ....+|+..|++
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~---------------p--~skEraLe~LC~-------------- 457 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND---------------P--DSKERALEVLCT-------------- 457 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC---------------c--hHHHHHHHHHHH--------------
Confidence 334566666666655332 134455555544210 0 123344444433
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHH
Q 000051 2077 PALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMI 2155 (2612)
Q Consensus 2077 ~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il 2155 (2612)
++.|.. ..+.+...++.+...... ..-..++..+..++-=++..+|.+|+.+|..|+-+....+.+ ..+.
T Consensus 458 -----fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~--~sv~ 528 (898)
T COG5240 458 -----FIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP--QSVE 528 (898)
T ss_pred -----HHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--HHHH
Confidence 332221 111222233333322211 112234445555554567899999999999997655433332 3555
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHH
Q 000051 2156 STLIVLLSDSDSTTVAAAWEALSRVV 2181 (2612)
Q Consensus 2156 ~~L~~ll~d~d~~V~~~a~~aL~~l~ 2181 (2612)
..|-++++|.|.+||+.|..++..+-
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 66677899999999999988887764
No 74
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.35 E-value=2.3e-06 Score=85.42 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
.|.+++.++..++.+++..+.+|+..++|.++.++.|++..||..|++++-.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni--------------------------- 54 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNI--------------------------- 54 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------------------------
Confidence 68899999999999999889999999999999999999888887776665555
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+......+-.++++|++.+.+++.|+++.||.+|. .|.++
T Consensus 55 -----------~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 55 -----------SKVARGEILPYFNEIFDALCKLSADPDENVRSAAE-LLDRL 94 (97)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH-HHHHH
Confidence 33334445557899999999999999999999884 44443
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.33 E-value=0.00087 Score=87.81 Aligned_cols=225 Identities=16% Similarity=0.205 Sum_probs=166.8
Q ss_pred hHhhHHHHHHHhc-CCCCHHHHHHHHHHHHHhhhhcc-cccHHHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhcccch
Q 000051 2071 HLGTILPALLSAM-GDDDMDVQSLAKEAAETVTLVID-EEGVESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2071 ~l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~~~-~~~l~~ll~~Ll~~l-~~~~~~vR~~A~~~L~~l~~~~~~~~ 2147 (2612)
....++..++... ..+++..|..+..++..++..+. ++.+..++..+.... ...+...|..++..+.-+.+..-...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4555667777664 45568889999999998888764 356788888887777 55667777777777766665543444
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
.+...+++..|+.++++ +++...+..+++-++...+. .+.. .. . ..+.-+...+-.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~~-----------~~--------~--a~vklLykQR~F 321 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLNK-----------EN--------H--ANVKLLYKQRFF 321 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcCc-----------cc--------c--chhhhHHhHHHH
Confidence 57778889999999987 56777788888877764221 1100 00 0 011111122445
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 2307 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l 2307 (2612)
..++|.++++....+.+.|.....+++.++++++.+.+.++++.+.+-|++.+.-. +.+++.+++.+|..++...+..+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHHH
Confidence 67899999999988888999999999999999998899999999999999999754 77899999999999998888778
Q ss_pred cCchHHHHHHHHH
Q 000051 2308 KPFLPQLQTTFIK 2320 (2612)
Q Consensus 2308 ~p~lpqL~~~~~k 2320 (2612)
.+|+..+++.+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
No 76
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00094 Score=86.95 Aligned_cols=460 Identities=17% Similarity=0.181 Sum_probs=261.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhc
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~-l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~ 1498 (2612)
..++.+...+++..+.-|.. +++.+... .-+.++..++|.+++.++..+-..|+-+-.-+...+..-|+.-.
T Consensus 13 ~ei~elks~l~s~~~~kr~~---a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~---- 85 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKD---AVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI---- 85 (734)
T ss_pred hhchHHHHHhhhhhhhhHHH---HHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH----
Confidence 34444444444443333332 33333332 22356778888888888877777777666666666666555432
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
..++.+++-+.|+++.+|..|.+.++.+.- +.... .+.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~e---------------------------------------y~~ 123 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITE---------------------------------------YLC 123 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHH---------------------------------------HHH
Confidence 234455666788888888888877665431 01112 233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC----
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---- 1654 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~---- 1654 (2612)
..+.++++|.++.+|+.++.++..+... +++.. .-..+++.+..++.|.+|.|-..|..++..+.+.-....
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 3445566666777777777777666543 11111 123478888888999999999999999999888654322
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh--HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~--l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
-..++..+++.+..-+.+ -+ +..+.........+. ...++..+...+.+.++.+--++...+-.+...+...-.
T Consensus 200 ~~~~~~~lL~al~ec~EW-~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~ 275 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEW-GQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE 275 (734)
T ss_pred cHHHHHHHHHHHHHhhhh-hH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence 234445555554433222 11 222233333333322 234555555556666666666666666666655554333
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~ 1812 (2612)
.++.++-|+++..+..+. .+.-.+++-...++...+. ....-+..+.-...|..+ +...=+
T Consensus 276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~kynDPiY-vK~eKl---------------- 336 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKVFFCKYNDPIY-VKLEKL---------------- 336 (734)
T ss_pred HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHeeeeecCCchh-hHHHHH----------------
Confidence 456677788887777665 6666777766666554332 111000000000011110 111111
Q ss_pred ccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 000051 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1813 ~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~ 1892 (2612)
+.+......+...+++..+...-.+.+.+.-+.|+.+++.++...... ..+++.++.
T Consensus 337 ------------------eil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLe 393 (734)
T KOG1061|consen 337 ------------------EILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLE 393 (734)
T ss_pred ------------------HHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHH
Confidence 112222223344456666666667777888888999999887654432 445555666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH
Q 000051 1893 SLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2612)
.+.-.-.-+-+.+...+.++.++.+... ..+++.+...+.+ .+|+.|.+..+.+|+-..... -...++..+.
T Consensus 394 ll~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------~a~elL~~f~ 466 (734)
T KOG1061|consen 394 LLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------NALELLESFL 466 (734)
T ss_pred HHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------cHHHHHHHHH
Confidence 6653333345556777888888876654 5566666665554 578889988888887543332 2355666667
Q ss_pred HHhcCCcHHHHHHH
Q 000051 1972 TALCDSILEVRESA 1985 (2612)
Q Consensus 1972 ~~L~D~d~~Vr~~A 1985 (2612)
+.+.|....|+-.-
T Consensus 467 en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 467 ENFKDETAEVQLEL 480 (734)
T ss_pred hhcccchHHHHHHH
Confidence 77777777776543
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.30 E-value=0.00064 Score=89.00 Aligned_cols=360 Identities=18% Similarity=0.181 Sum_probs=216.4
Q ss_pred HHHHHHhhcCCCh--HHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc---
Q 000051 1340 SRLLDQLMKSDKY--GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--- 1414 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~--~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~--- 1414 (2612)
|.++..|.+.++. .........|+.+......-......++..+...++.+.+...-...+..+..+.+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 3455555544321 23334444455554432211111114555555555544456666677777777766544322
Q ss_pred --hhhHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhc----------CCCh--
Q 000051 1415 --EPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKAW-- 1472 (2612)
Q Consensus 1415 --~~~v~~-ilp~ll~~l~-----D~--~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----------~~~w-- 1472 (2612)
.-|... ++|.++.... +. ++.+-+.+...++.++..++....+.++..+...+- +..+
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 334443 7777776542 12 256777778888888888888877666666655432 1111
Q ss_pred hhHHHHHHHHHHH-HhhCchhhhhhhchhHHHHhhhhc-CCCHHHHHHHHHHHHHHHhhcCCh-hHhhHHHHHHhhcCCC
Q 000051 1473 RTKQSSVQLLGAM-AYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDP 1549 (2612)
Q Consensus 1473 ~~r~~a~~~L~~i-a~~~p~~l~~~L~~ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ivp~Ll~~l~d~ 1549 (2612)
......+.++..+ +...++...+....++..++.... ..++..|..+++++..+...+.+. .++.++..+......
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~- 240 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS- 240 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-
Confidence 1222233333333 332333222244556666666543 345889999999999888765433 345555554444300
Q ss_pred ChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc---CCCCcchhhHhhhHHHHHH
Q 000051 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV---TEPKDMIPYIGLLLPEVKK 1626 (2612)
Q Consensus 1550 ~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~---~~~~~l~~~l~~ll~~L~~ 1626 (2612)
......+..+..++..+.+.. ++ |....+...+.+
T Consensus 241 -------------------------------------~~~~~~~~~~~~~~~Wi~KaLv~R~~-----~~~~~~~~~L~~ 278 (415)
T PF12460_consen 241 -------------------------------------SEDSELRPQALEILIWITKALVMRGH-----PLATELLDKLLE 278 (415)
T ss_pred -------------------------------------cCCcchhHHHHHHHHHHHHHHHHcCC-----chHHHHHHHHHH
Confidence 001122222222222222211 12 233445666666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCC----------------CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Q 000051 1627 VLVDPIPEVRSVAARAIGSLIRGMGE----------------ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2612)
Q Consensus 1627 ~L~d~~~~VR~~A~~aL~~L~~~~g~----------------~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g 1690 (2612)
++.+ +++...++++++.+....++ ..|..++|.+++..++..+. .|.....+++.+++..+
T Consensus 279 lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 279 LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVP 355 (415)
T ss_pred HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC
Confidence 7766 67888888888888765221 14678899998888765543 67777889999999888
Q ss_pred hhh----HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhh
Q 000051 1691 TVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2612)
Q Consensus 1691 ~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~ 1745 (2612)
... ++.++|-+++.+..+++.++.+++..+..+...-++.+.+|+..++|.+++.
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 763 4788999999999999999999999999999888888999999999998864
No 78
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.25 E-value=0.17 Score=76.42 Aligned_cols=602 Identities=19% Similarity=0.214 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHhCh---hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhH
Q 000051 1677 GAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~---~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~V 1753 (2612)
.+..+++......+. +..+.....++..+.+....-|-.+......++...+..|.||+..++..++..+.|++..+
T Consensus 112 ~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i 191 (2341)
T KOG0891|consen 112 LAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAI 191 (2341)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhh
Confidence 444555555443332 23344455566666444455566778888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHhhc-------cCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1754 R~~Al~al~~lv~~~~~~~i~~llp~L~~~-------l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
|..+..++.......+++.....++.+.++ +..+.-. --++....+++++. .
T Consensus 192 ~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~~~-~~~~~~~~~e~~~~-~------------------- 250 (2341)
T KOG0891|consen 192 RLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDGVK-IHASLLVYNELLRI-S------------------- 250 (2341)
T ss_pred hHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchHHH-hhhHHHHHHHHHHH-H-------------------
Confidence 999999998877666655411111112111 1111100 00001111111110 0
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH-HHHHHHHHHHHHHhcCCCHHHHHHH
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK-EIMPVLMNTLISSLASSSSERRQVA 1905 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~-~~l~~ll~~L~~~L~~~~~~~R~~A 1905 (2612)
.. +.+.. +.+-.....+..-.+..++..-......++...+..|. .|+.+.+..++..+.. ....+
T Consensus 251 ---~~-~~~~~-----~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~ 317 (2341)
T KOG0891|consen 251 ---DP-FLEKY-----DSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRK----EKTRA 317 (2341)
T ss_pred ---HH-HHHhh-----HHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhc----cchhH
Confidence 00 00000 00000000000001111222222222333333333332 3455555555555541 11667
Q ss_pred HHHHHHHHHHhchhhhhhH---HHHHhhhcCCCChhHHHH---HHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH
Q 000051 1906 GRALGELVRKLGERVLPSI---IPILSRGLKDPSASRRQG---VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1906 ~~aL~~lv~~~~~~~l~~l---lp~L~~~L~d~~~~vR~~---a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
...++.+.-.++....+.. ...+...+...+-..++. ....++.+....++.........++..+...... .
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~--~ 395 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLS--D 395 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCch--H
Confidence 7777777766665432221 112222222111111111 1122333323333333333334444444332211 1
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcc--cccccccchhhccCC-----cch-
Q 000051 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLP-----LSA- 2051 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~--~~vlp~Lip~L~~~~-----~~~- 2051 (2612)
.-..++-.+....++ -...+.+.++..+ ..++.... ....+..+|.+..+. .+.
T Consensus 396 ----~l~e~l~~l~~rl~~-l~~~i~~rll~~~-------------~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~~ 457 (2341)
T KOG0891|consen 396 ----SLLERLFILSQRIPK-LGQSIQDRLLNMT-------------SQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGDS 457 (2341)
T ss_pred ----HHHHHHHHHHHhccc-hhhHHHHHHHHHH-------------HHHHhCccccCccccCccchhcccchhhhhcccc
Confidence 111122222222221 1112233333221 11111000 000011222222111 010
Q ss_pred --hHHHHHHHHHHH--hCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc---------ccHHHHHHHHH
Q 000051 2052 --FNAHALGALAEV--AGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELL 2118 (2612)
Q Consensus 2052 --~~~~al~~La~~--~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---------~~l~~ll~~Ll 2118 (2612)
....++..+... .+.+...++..+++... ...++++|..+..++..++..... ..+..++..+.
T Consensus 458 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 458 TDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYL---EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred cHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 111233333221 23344445554444433 456677887776655555442211 11344444444
Q ss_pred hh-cCCCChhHHHHHHHHHHHHHHhcccchhc--cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHH
Q 000051 2119 KG-VGDNQASIRRSSAYLIGYFYKNSKLYLVD--EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2612)
Q Consensus 2119 ~~-l~~~~~~vR~~A~~~L~~l~~~~~~~~~~--~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2612)
.. +.+.++.+|......+. ..+.+ .-+..+..++..+.|..-..+.++...++++....+.-.++.+...
T Consensus 535 ~~aia~~~~~i~~~v~~~l~-------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN-------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc-------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 33 35677888877766655 11111 2356777788888898888999998888888876665555554444
Q ss_pred HHHHHHhhhhhhh-hh--hcCCc--ccccCCC--CCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhc
Q 000051 2196 IRDAISTSRDKER-RK--KKGGP--ILIPGFC--LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2612)
Q Consensus 2196 l~~~l~~~~~~~~-~~--~~~~~--~~l~g~~--~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~ 2268 (2612)
.........-... +. ..+.. ..+.+.. .-.++.+++-.+...+.+++.-+-..+..+++.++...| ..++.+
T Consensus 608 ~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g-~~~~~~ 686 (2341)
T KOG0891|consen 608 LLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGG-EEMVKW 686 (2341)
T ss_pred HHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhcc-chhhhc
Confidence 3333222111000 00 00000 0000000 001223344444455555666666778899999999888 667777
Q ss_pred hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc
Q 000051 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2269 v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l--pqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~ 2343 (2612)
+.....-+...+++..+...+.+++.+++.+.+..+..+.|+. |.+...+..-+... ...+|..+...+|.+...
T Consensus 687 ~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 687 VDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 7766666677777776778899999999999998888888876 77888888777665 789999999999966443
No 79
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.0026 Score=77.13 Aligned_cols=509 Identities=17% Similarity=0.188 Sum_probs=268.3
Q ss_pred CHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHH---------HHHHHhcCCCHHHHHHHHHHHHHHHHHh----------
Q 000051 1857 SLSVRQAALHVWKTIVANTPK-TLKEIMPVLMN---------TLISSLASSSSERRQVAGRALGELVRKL---------- 1916 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~---------~L~~~L~~~~~~~R~~A~~aL~~lv~~~---------- 1916 (2612)
..+||..|+.++..+....|+ .+..|+..++| .+.-.++|+++..|..|.+.+..+....
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 457899999988888776653 34445554444 1233467999999999999998887542
Q ss_pred chh-hhh----------hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHHHHH
Q 000051 1917 GER-VLP----------SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRE 1983 (2612)
Q Consensus 1917 ~~~-~l~----------~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~Vr~ 1983 (2612)
|+. +.| .....+...+. +..+.+-...+.+|..++....-..+ ..++..++..+.+.+...|+.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 111 111 12222222232 34566666777888888776665555 356788889999999999999998
Q ss_pred HHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcc-------hHHHHHHHHHhhhc--------ccc-------cccccc
Q 000051 1984 SAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS-------DTALDGLKQILSVR--------TTA-------VLPHIL 2041 (2612)
Q Consensus 1984 ~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~-------~~al~~L~~il~~~--------~~~-------vlp~Li 2041 (2612)
.+...++.+..... ..|.+-..+..+..+ ...-+..++++... +.. ++...+
T Consensus 169 s~l~~~~~~v~t~~------~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHA------PLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred HHHHHHHHHHhcCC------CCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 88877777654321 122222222111000 00111122222110 000 000000
Q ss_pred hhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHh
Q 000051 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLK 2119 (2612)
Q Consensus 2042 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~ 2119 (2612)
.....++-..+..+ ....++|. +..+ ..+|-.+...+..+...++ ..++-.+...+..
T Consensus 243 ~i~~~~~~~s~~~~---~~~~~~~~----------------~~~p-s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~ 302 (728)
T KOG4535|consen 243 SIVVLPKEDSCSGS---DAGSAAGS----------------TYEP-SPMRLEALQVLTLLARYFSMTQAYLMELGRVICK 302 (728)
T ss_pred eeeecCCccccchh---hHHhhhcC----------------ccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00000111111110 00111111 1111 2355556666655555443 2445667777777
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh--cCcccc----ccHH
Q 000051 2120 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS--VPKEVQ----PSYI 2193 (2612)
Q Consensus 2120 ~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~--~~~~~l----~~lv 2193 (2612)
.+.+.++.+...+..++..+.......+.|. .....+....+ ..+... .+...+ +.+.
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~-------------~~k~~~q~~~f---w~~~l~~p~~~~~YDs~~~Tl~ 366 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPD-------------STKAPDQRAPF---WTMMLNGPLPRALYDSEHPTLQ 366 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCC-------------cccchhhhccH---HHHHccCCChhhhhhhcCCCch
Confidence 7888888888888888777765443222221 01112222211 111111 111111 1111
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i 2272 (2612)
......+... + ..+-..+|.+-....++|+.|..+. +.-+|..|..+++-++-+-+-.....|+..-
T Consensus 367 ~s~Cdals~i---------~---~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 367 ASACDALSSI---------L---PEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hHHHHHHhhc---------C---chhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 1111111111 0 1222335666677888898888743 2335666777777666554433344455555
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc---cCch----HHHHHHHHHH--hcCC-CHHHHHHHHHHHHHHHh
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL---KPFL----PQLQTTFIKC--LQDS-TRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l---~p~l----pqL~~~~~k~--L~d~-~~~vR~~Aa~aLg~L~~ 2342 (2612)
.....+.++|+ .-.+|..+.+++|.|....-..+ +.+. ..++...+.. ..+. +..||.+|..+||++..
T Consensus 435 a~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 55566777764 55677888888887765432221 1122 2223322222 2333 67899999999999854
Q ss_pred c-cCChhHHHHHHHHhhh----c-----CCHHHHHHHHHHHHHHHHhcCCCc-ChHHHHHHHHHHHHhhcC-CCHHHHHH
Q 000051 2343 L-STRVDPLVGDLLSSLQ----V-----SDAGIREAILTALKGVLKHAGKSV-SSAVKIRVYSVLKDLVYH-DDDHVRVS 2410 (2612)
Q Consensus 2343 ~-~~~~~~~l~~Ll~~l~----~-----~d~~vr~~~l~AL~~vi~~~g~~~-~~~~~~~i~~~L~~~l~~-~~~~vr~~ 2410 (2612)
+ ++-..+-+.++++.-. . ....||-++++++..++++-.-.+ ..+..+.+++.|..++.+ .+=.+|..
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 3 2222223334433321 1 135789999999999998654323 236777888888777765 46689998
Q ss_pred HHHHHHHHHh
Q 000051 2411 AASILGIMSQ 2420 (2612)
Q Consensus 2411 aa~~Lg~L~~ 2420 (2612)
||.+|.--++
T Consensus 594 AA~aL~vp~~ 603 (728)
T KOG4535|consen 594 AAAALSVPGK 603 (728)
T ss_pred hhhhhcCCCC
Confidence 8887765444
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.018 Score=71.56 Aligned_cols=289 Identities=15% Similarity=0.163 Sum_probs=167.8
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1572 ~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
..+.++.|.|...+.+.-.-+...++..+..++..- --..++++.+..|...|..+....|-.|.+.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 445678888888888876677777777777665431 1123567788888889999989999999999999988765
Q ss_pred CCC--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1652 EEN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1652 ~~~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
+.. .+.=+ +.|-++. .|..+..++..+++.-..+..+.++..+.....+-++..+.-++.++..++..|+.
T Consensus 336 ~kv~vcN~ev----EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 336 QKVSVCNKEV----ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred ceeeecChhH----HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 441 11111 2222332 35556667777777655566666666665555555556666667777777777776
Q ss_pred chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1730 ~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
.-..|+.-+...+++ ...-+.+..+.+++..+++..++. |..+++.+.+++
T Consensus 409 k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s--------------------kEraLe~LC~fI------ 459 (898)
T COG5240 409 KKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS--------------------KERALEVLCTFI------ 459 (898)
T ss_pred HHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH--------------------HHHHHHHHHHHH------
Confidence 544444433333332 112234455555555544432211 122222333322
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH--HHHHHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLM 1887 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--~~~l~~ll 1887 (2612)
.|.. --+.++++++-+....|++- ..|+..+.
T Consensus 460 --------------------------------------------EDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIy 493 (898)
T COG5240 460 --------------------------------------------EDCE--YHQITVRILGILGREGPRAKTPGKYVRHIY 493 (898)
T ss_pred --------------------------------------------hhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHH
Confidence 1110 11223334444443333211 12333332
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhh-hhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l-~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
+. +-=.+..+|.+|..||..+.-...+.+. ..+...|.++++|.|.++|-.+...+..+
T Consensus 494 NR----~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 494 NR----LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HH----HHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 22 2224667899999999887755555543 45666777889999999998888777654
No 81
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.21 E-value=0.068 Score=70.32 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=98.7
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhc
Q 000051 2283 RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV 2360 (2612)
Q Consensus 2283 ~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~Ll~~l~~ 2360 (2612)
.+++-+|..+.-+|+.++-.-+.-. ..++|.|++.|.-. .-.+|++..-++|.+ +.+...++.|+|.+-..+.+
T Consensus 942 ~~~~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 942 MFSDKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred ccchHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC
Confidence 3567788899999999887655433 34566677777664 678999999999999 55667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCcChHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2361 SDAGIREAILTALKGVLKHAGKSVSSAVKI-RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2361 ~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~-~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
+++-+|...+--|..+++..= ..+.. -++.++... -|.++++|+-+--|+|.+.+.-.+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~----vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGI----VKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhh----hhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999888888888876421 11222 234444444 467899999999999998765443
No 82
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=0.092 Score=71.73 Aligned_cols=636 Identities=16% Similarity=0.186 Sum_probs=309.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---------hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGE---------RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---------~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
..++..+.+.++..|.+...++++++...-. .+...++..+.+.+.|-++-+|..+...+..+......
T Consensus 315 ~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-- 392 (1251)
T KOG0414|consen 315 TLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-- 392 (1251)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC--
Confidence 3445567888889999998888888754311 12335888888888999999999999988888765432
Q ss_pred HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhh----------hhhhHHHHHHhccCCCc------chHHH
Q 000051 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA----------IDEIVPTLLHALEDDQT------SDTAL 2022 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~----------~~~ilp~Ll~~L~~~~~------~~~al 2022 (2612)
.......++......+.|.+.-||.+|++-+..+........ .++.+..+-+.+++... .....
T Consensus 393 p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s 472 (1251)
T KOG0414|consen 393 PLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRS 472 (1251)
T ss_pred CccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhh
Confidence 123456677777788889999999999998887765433211 12222222212211100 00000
Q ss_pred HHHHHHhh-hc------cccccc---------ccchhhccCCcchhHHHHHHHHHHH----hCCChhhhHhhHHHHHHHh
Q 000051 2023 DGLKQILS-VR------TTAVLP---------HILPKLVHLPLSAFNAHALGALAEV----AGPGLNFHLGTILPALLSA 2082 (2612)
Q Consensus 2023 ~~L~~il~-~~------~~~vlp---------~Lip~L~~~~~~~~~~~al~~La~~----~g~~l~~~l~~il~~Ll~~ 2082 (2612)
.....++. .. ....-. .+-....+.|. ....+..-+-+ -+-.|...+...+|.+.+.
T Consensus 473 ~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~~s~~~---~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~l 549 (1251)
T KOG0414|consen 473 ENVKGVIEDAEKDSTTEKNQLESSDNKQEEHCLLENEVESVPA---ENEIMQLKALVQFLEDAISFSDEMSEAIPIISQL 549 (1251)
T ss_pred hhcccceeechhhhhhhccccccccccchhhhhhhhhhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 000000 00000000000 00011110000 1334556677788888888
Q ss_pred cCCC-CHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc-hhccHHHHHHHHHH
Q 000051 2083 MGDD-DMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIV 2160 (2612)
Q Consensus 2083 L~~~-~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-~~~~~~~il~~L~~ 2160 (2612)
+... ..+|.+. +..+. .+..++-++...-+..++..+=..+..+|.+...+...++-..+.. -......+.+.|+.
T Consensus 550 l~s~t~teV~E~-Idfl~-~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~ 627 (1251)
T KOG0414|consen 550 LFSKTTTEVKEA-IDFLV-RCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSK 627 (1251)
T ss_pred HhcCChHHHHHH-HHHHH-HHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHH
Confidence 7544 4444443 22222 1223454555556666666665556668888888887776544322 21222566777777
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHH--HhhhhhhhhhhcCCcccccCCC---CCcCchhhHHHHH
Q 000051 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI--STSRDKERRKKKGGPILIPGFC---LPKALQPLLPIFL 2235 (2612)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l--~~~~~~~~~~~~~~~~~l~g~~---~p~~l~~ilp~l~ 2235 (2612)
++.|....-+.+--+.++.+... ...-+.++..+.+.. +..+.. ..+..+.. .+-|.. .|.-+..-+..++
T Consensus 628 l~~~~s~~d~~slE~vl~~lv~~--~~Id~~Vi~~Lw~~ftlq~~~~~-~~q~~~sl-~iL~M~s~s~~~Iv~~~~~~lv 703 (1251)
T KOG0414|consen 628 LLIDASIGDLTSLEEVLCELVAR--GYIDAAVINKLWEIFTLQKKGTT-NEQSRGSL-IILGMASRSKPSIVLANLDLLV 703 (1251)
T ss_pred HHhcccccchhhHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhccCc-hhhhccce-eehhhhhccChhhhhhhhHHHH
Confidence 77665433333333344444331 112222222222221 100000 00001110 111110 0111111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChh---hhhhc----hhhhhHHHHHHhcC---CCC--H-hHHHHHHHHHHHHHHh
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQ---SLKEF----VIPITGPLIRIIGD---RFP--W-QVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~---~l~p~----v~~i~~pLi~~l~~---~~~--~-~vk~~al~~L~~L~~~ 2302 (2612)
.+.=|.+.....++..++.++.....+ .-.++ -..+.+.|-..+.. +.+ | .+...++.++-.+..
T Consensus 704 -~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~- 781 (1251)
T KOG0414|consen 704 -QIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM- 781 (1251)
T ss_pred -HhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-
Confidence 111234555555555556555433211 00111 11222222222221 111 2 355555665555443
Q ss_pred cCCCccCchHHHHHHHHHH------------hcCCC-----HH---HHHHHHHHHHHHHhcc-CChhHHHHHHHH-----
Q 000051 2303 GGIALKPFLPQLQTTFIKC------------LQDST-----RT---VRSSAALALGKLSALS-TRVDPLVGDLLS----- 2356 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~------------L~d~~-----~~---vR~~Aa~aLg~L~~~~-~~~~~~l~~Ll~----- 2356 (2612)
.|..+ ..++++...+. ..|++ .. ++..-..+.|..+.-+ -.++.-++..+.
T Consensus 782 ~Pe~l---a~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~ 858 (1251)
T KOG0414|consen 782 LPEVL---ATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIK 858 (1251)
T ss_pred ChHHH---HHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11222221111 11110 11 2222234444442100 011111110000
Q ss_pred ----hhhcCC----------------------HHHHHHHHHHHHHHHHh---cCCCcChHHHHHHHHHHHHhhcC----C
Q 000051 2357 ----SLQVSD----------------------AGIREAILTALKGVLKH---AGKSVSSAVKIRVYSVLKDLVYH----D 2403 (2612)
Q Consensus 2357 ----~l~~~d----------------------~~vr~~~l~AL~~vi~~---~g~~~~~~~~~~i~~~L~~~l~~----~ 2403 (2612)
.-++.+ ...-....+++..+... .|. ......+.+++.+.+++ .
T Consensus 859 ~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~e~c~n~~~~s 935 (1251)
T KOG0414|consen 859 TELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVVEGCRNPGLFS 935 (1251)
T ss_pred HHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHhcCCCcCC
Confidence 000000 00012344445444433 121 23455666667777743 5
Q ss_pred CHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhc
Q 000051 2404 DDHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLK 2482 (2612)
Q Consensus 2404 ~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~ 2482 (2612)
++..+.+|.-+||++.-.-. +-...-++-+... -.+++..+|.+++.+++-+.-..|.. .+...+.+...+.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa-~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl------ie~~T~~Ly~rL~ 1008 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL------IEPWTEHLYRRLR 1008 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc------cchhhHHHHHHhc
Confidence 78999999999999874322 2112222222222 13677778988999998887776654 3455677888889
Q ss_pred cCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2483 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2483 ~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
|.++.+|++|+..+..++....- .....+..+..++.|++..+|-.|-.-.+-++++. +.|-..|+.
T Consensus 1009 D~~~~vRkta~lvlshLILndmi-------KVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPd 1075 (1251)
T KOG0414|consen 1009 DESPSVRKTALLVLSHLILNDMI-------KVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPD 1075 (1251)
T ss_pred CccHHHHHHHHHHHHHHHHhhhh-------HhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchH
Confidence 99999999999999999886542 23456788888999999999999999999999876 444444433
No 83
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.071 Score=68.90 Aligned_cols=338 Identities=15% Similarity=0.141 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhhHH-HHHHHHH
Q 000051 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVI-QMLPLLL 1426 (2612)
Q Consensus 1357 ~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-------~~~~~~~R~~Al~al~~L~~~~~--~~~~~~v~-~ilp~ll 1426 (2612)
+|+..+-......+...+. ++++++...+. +-++++..++|+..+..+..... ..+...+. -++++++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555566666666666665 78888887772 12367788899999998887322 33333333 3678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhh--CchhhhhhhchhHHH
Q 000051 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPK 1503 (2612)
Q Consensus 1427 ~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~--~p~~l~~~L~~ivp~ 1503 (2612)
+.+.++.-..|..+++.+..+...+++.++ ........+.+.+..-.++..|..++.-+..+ ....++.+.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 999999999999999999888777776654 56666667778887778888888888777754 334577888999999
Q ss_pred HhhhhcCCCHHHHHHHHHHH-HHHHhhcCC--hhH-hhHHHHHHhh----cCCCC---hhHH----HHHHHHHhc-cccc
Q 000051 1504 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVPTLLMG----LTDPN---DHTK----YSLDILLQT-TFVN 1567 (2612)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL-~~l~~~~~~--~~i-~~ivp~Ll~~----l~d~~---~~~r----~al~~L~~~-~~~~ 1567 (2612)
++.+-++-+.++-..+.+.+ +.+.+.++. +++ ..++..+++. +.+++ ..+. .|...|..+ +.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 98888877777666655543 455544431 122 3344433332 22221 1111 121111110 1111
Q ss_pred cCC------hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCH-HHHHHHH
Q 000051 1568 TVD------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2612)
Q Consensus 1568 ~i~------~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~-~VR~~A~ 1640 (2612)
... ...-..+.|.+.=.+++.-.+.-+.|++++.+..-.. +++.|....+...+.+++.++.. .--+.+.
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 1122334455444555555677788888887643321 34555555666666666666542 4455666
Q ss_pred HHHHHHHhhhCCC------CchhhHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhChhhHHhHhH
Q 000051 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILP 1699 (2612)
Q Consensus 1641 ~aL~~L~~~~g~~------~~~~ll~~L~~~L~~~~~-~~~R~~aa~~L~~i~~~~g~~~l~~llp 1699 (2612)
-++..+...-+.+ |..-+.......+.++.. -.++.++++-+-.++-.++.+-+++.+|
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p 769 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP 769 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH
Confidence 6666666543322 222233333344444332 1344444444444444444443333333
No 84
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0028 Score=82.77 Aligned_cols=435 Identities=17% Similarity=0.187 Sum_probs=233.9
Q ss_pred hhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchH-hHHHHHHHhcCCCCHHHHHHHHhhhHHhHhh
Q 000051 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2612)
Q Consensus 1252 ~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~-~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~ 1330 (2612)
+..++|-+-++.... +-+.+.-+..++...| +..|... ..+..++.-..++++.+|..|.+.++.+ .
T Consensus 47 vSslF~dvvk~~~T~------dlelKKlvyLYl~nYa----~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--~ 114 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTR------DLELKKLVYLYLMNYA----KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--R 114 (734)
T ss_pred hHhhhHHHHhhcccC------CchHHHHHHHHHHHhh----ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--e
Confidence 455555555544431 1233444444444333 3344432 2467788888999999999887765432 1
Q ss_pred hcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000051 1331 MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2612)
Q Consensus 1331 ~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~ 1410 (2612)
++.-...+.+.+...+. +++.-+|+.++.+.+.+-. .++.......+++.|++++.|. ++.+-..|+-++..+.+.-
T Consensus 115 v~~i~ey~~~Pl~~~l~-d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLK-DDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhC
Confidence 11112344555555554 3445689999988876653 3334444457899999999977 7889989999999998866
Q ss_pred ccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh
Q 000051 1411 GRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1411 ~~~-~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~ 1487 (2612)
+.. .......++..++..+.+-+.--+ ...+..+....++. ....++..+...|.+.+..+-.++..++.....
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 531 112223445555555443322222 22333333333332 234455555556666666666666666655554
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2612)
..++.....+..+-|.++-++. ..++++-.|.+-+.-+....++ .+..-+..+ |+.
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls-~~~e~qyvaLrNi~lil~~~p~-~~~~~~~~F----------------------f~k 324 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLS-SESEIQYVALRNINLILQKRPE-ILKVEIKVF----------------------FCK 324 (734)
T ss_pred HHHHHHHHHHHHhcccceeeec-ccchhhHHHHhhHHHHHHhChH-HHHhHhHee----------------------eee
Confidence 3333223334455555554443 3447777766666655543321 111111111 112
Q ss_pred cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1568 ~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
+.++- -++..-.+++..++.. ..+++++..+.....+-+.+.-..+.+|+|.++
T Consensus 325 ynDPi------------------YvK~eKleil~~la~~--------~nl~qvl~El~eYatevD~~fvrkaIraig~~a 378 (734)
T KOG1061|consen 325 YNDPI------------------YVKLEKLEILIELAND--------ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLA 378 (734)
T ss_pred cCCch------------------hhHHHHHHHHHHHhhH--------hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhh
Confidence 21111 1122222333333221 123345555555555666677777788888887
Q ss_pred hhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhh
Q 000051 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1648 ~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~ 1726 (2612)
....+. .+.++.+++.++...++ +...+...+-.+.+.+...+ +.+++.+-....+ .+|+.|.+.+++++..+..
T Consensus 379 ik~e~~--~~cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 379 IKAEQS--NDCVSILLELLETKVDY-VVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred hhhhhh--hhhHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 766554 66777777776644433 22233333444444443322 4444444333333 4677788888888888777
Q ss_pred hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000051 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2612)
Q Consensus 1727 ~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~ 1763 (2612)
+.+ ...++..+++...|+...|+-.-+.+.-.
T Consensus 455 i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 455 IEN-----ALELLESFLENFKDETAEVQLELLTAAIK 486 (734)
T ss_pred cCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 765 24466677777777777666555544433
No 85
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.16 E-value=8.1e-05 Score=100.58 Aligned_cols=348 Identities=18% Similarity=0.205 Sum_probs=222.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHh--hCchhhhhh
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQC 1496 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~--~~p~~l~~~ 1496 (2612)
..+++....++..+....|+...+++..+.. ....+..+..+...+.-.....-.+++..+..+.. +.|......
T Consensus 62 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~---~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~ 138 (815)
T KOG1820|consen 62 IQLLSFGLKCLDSKRVNIRDTKTQSLLRIGK---LEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA 138 (815)
T ss_pred eeeccchhhhcccccccccCcchhHHHHHHH---hhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4566677777777777777777666666611 11234444444444443333333444555554443 344433222
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH----h----hHHHHHHhh----------------------c
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI----A----SLVPTLLMG----------------------L 1546 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i----~----~ivp~Ll~~----------------------l 1546 (2612)
+...++.+. +..||..+.+.+..+.+..++... . .++..+-.. -
T Consensus 139 ~~~~~~~l~------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (815)
T KOG1820|consen 139 FIKHVGSLA------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDE 212 (815)
T ss_pred ccccCcccc------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccc
Confidence 222222222 467888888888888877664210 0 111111110 0
Q ss_pred CCCChhHH-H----HHHHHHhccccccCC-------hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch
Q 000051 1547 TDPNDHTK-Y----SLDILLQTTFVNTVD-------APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2612)
Q Consensus 1547 ~d~~~~~r-~----al~~L~~~~~~~~i~-------~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~ 1614 (2612)
.+|+...+ . .++. ....+....+ ...+..+.+.+...+.++.|..|..|...+...+.... .....
T Consensus 213 ~~~n~~e~~~~~~~~~~~-~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~ 290 (815)
T KOG1820|consen 213 SDPNVKEQLEKPERGLQR-SKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVK 290 (815)
T ss_pred cCCChhhccccccccccc-ccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc-ccccc
Confidence 11111110 0 0000 0001111111 13456677788888999999999999998888776433 12345
Q ss_pred hhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1615 ~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
.|...+...+...+.|.+-.|-..++.+|..++..++.. +...+.|.+++.+++.. ...|.....++..++. .
T Consensus 291 ~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk-~~l~d~l~~~~d~~~n---s 366 (815)
T KOG1820|consen 291 GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKK-SELRDALLKALDAILN---S 366 (815)
T ss_pred CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhcc-HHHHHHHHHHHHHHHh---c
Confidence 677777777788888999999999999999999999865 44566777788776544 3355444444544444 2
Q ss_pred hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1692 ~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
..+..+.+.++..+.+.++..|..+..+|.......+. .+..-+..++|.+.....|.+.+||.+|.+++..+++.+|
T Consensus 367 ~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 367 TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 24567788889999999999999999999998888873 3445578899999999999999999999999999999999
Q ss_pred hchhhhhHHHHh
Q 000051 1770 TTSLPLLLPAVE 1781 (2612)
Q Consensus 1770 ~~~i~~llp~L~ 1781 (2612)
...+..++..+.
T Consensus 447 e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 447 EEVFKKLLKDLD 458 (815)
T ss_pred HHHHHHHHHhhc
Confidence 987776665554
No 86
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.09 E-value=1.3e-05 Score=80.07 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hHhhHHHHHHhhcCCCC
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~ivp~Ll~~l~d~~ 1550 (2612)
.|++++..|.+++...++.+..+++.|+|.++.+++|++++||..|+++|.++++..++. ++..+++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999998888899999999999999999999999999999999999988753 45788888999999998
Q ss_pred hhHHHHHHHH
Q 000051 1551 DHTKYSLDIL 1560 (2612)
Q Consensus 1551 ~~~r~al~~L 1560 (2612)
..+|.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888655433
No 87
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0096 Score=72.46 Aligned_cols=488 Identities=14% Similarity=0.111 Sum_probs=241.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhch----hhhhHHH---------HhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc-
Q 000051 1751 ESVRDAALGAGHVLVEHYATTS----LPLLLPA---------VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE- 1816 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~----i~~llp~---------L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~- 1816 (2612)
..||..|+..+...++.+..+. ...++|. +.-++.|.+.|.|.-+++....+++.- |.-+.
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls~ 84 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLSV 84 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHHH
Confidence 4688888888777776554431 1223332 234678999999999999999887531 10000
Q ss_pred -CCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh-H-HHHHHHHHHHHHHH
Q 000051 1817 -GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L-KEIMPVLMNTLISS 1893 (2612)
Q Consensus 1817 -~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~-l-~~~l~~ll~~L~~~ 1893 (2612)
.+-.|..+.. +.-.+.-..- + ..+++-.. .-.+....+-...++++..++.+.|-. + ..++-.++..+.+.
T Consensus 85 a~~~~~~~ftp--f~v~~a~si~-~-~~r~l~~~--l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~ 158 (728)
T KOG4535|consen 85 AEDTSDHAFTP--FSVMIACSIR-E-LHRCLLLA--LVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY 158 (728)
T ss_pred HhccCCcCCCc--hHHHHHHHHH-H-HHHHHHHH--HHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 0000111110 0001110000 0 01111111 124455667788899999999998843 2 23556677778888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhch--h--------------hh-----hhHHHHH------------------------
Q 000051 1894 LASSSSERRQVAGRALGELVRKLGE--R--------------VL-----PSIIPIL------------------------ 1928 (2612)
Q Consensus 1894 L~~~~~~~R~~A~~aL~~lv~~~~~--~--------------~l-----~~llp~L------------------------ 1928 (2612)
+.++++.+|..+...++.++..... + .. +.-...+
T Consensus 159 i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i 238 (728)
T KOG4535|consen 159 IRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLI 238 (728)
T ss_pred hhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCccee
Confidence 8999999999999999988753210 0 00 0000000
Q ss_pred --------------------hhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHH
Q 000051 1929 --------------------SRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986 (2612)
Q Consensus 1929 --------------------~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~ 1986 (2612)
..++.. .-..+|..+...|..+...++ ....|..++...+...+.+.++.+...++
T Consensus 239 ~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~a 316 (728)
T KOG4535|consen 239 RLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHGA 316 (728)
T ss_pred eeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 001110 011245555554444333222 23345566667777778899999999999
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcc--cccccccchhhccCCcchhHHHHHHHHHHHh
Q 000051 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2612)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~--~~vlp~Lip~L~~~~~~~~~~~al~~La~~~ 2064 (2612)
.++..+....+. ++.|. ...+..-...+..++..++ +.......+.+ ....+.++..+....
T Consensus 317 ~ll~~lg~~lv~----~~~P~-------~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl-----~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 317 KLLEELGTGLIQ----QYKPD-------STKAPDQRAPFWTMMLNGPLPRALYDSEHPTL-----QASACDALSSILPEA 380 (728)
T ss_pred HHHHHHHHHHhh----hcCCC-------cccchhhhccHHHHHccCCChhhhhhhcCCCc-----hhHHHHHHhhcCchh
Confidence 888877554432 11110 0000000011222221110 00001111111 112233444333322
Q ss_pred CCChhhhHhhHHHHHHHhcCCC-CHHHHHHHHHHHHHhhhhcc----cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 2065 GPGLNFHLGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2612)
Q Consensus 2065 g~~l~~~l~~il~~Ll~~L~~~-~~~vr~~a~~al~~l~~~~~----~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l 2139 (2612)
-..+..--.+..+.+.....|. +.-++.+|..++...+..-+ ...+.+....++..+.|..-.+|.-+++.+|++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 2222222234555555555432 34456666666655444222 123445555666667777788999999999988
Q ss_pred HHhcccc-------hhccHHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhh
Q 000051 2140 YKNSKLY-------LVDEAPNMISTLIVLLS--D-SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERR 2209 (2612)
Q Consensus 2140 ~~~~~~~-------~~~~~~~il~~L~~ll~--d-~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~ 2209 (2612)
....-.. -.......+..++.+-. + ....|+.++..+|+.+..-.. .+.+.....+. +...
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-----~i~~~~~~e~~---~~~~- 531 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-----PIEKPTFAEII---EESI- 531 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-----HhhhccHHHHH---HHHH-
Confidence 6532211 12233444444444432 2 235799999999998865321 11111111000 0000
Q ss_pred hhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh-hhhhhchhhhhHHHHHHhcCCCCHhH
Q 000051 2210 KKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQV 2288 (2612)
Q Consensus 2210 ~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~-~~l~p~v~~i~~pLi~~l~~~~~~~v 2288 (2612)
..++. + ....+...+|-+++.++|.+.++-.- -.-.++.+.++..|...+.+..+..+
T Consensus 532 -~~l~~------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 532 -QALIS------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred -Hhccc------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 00000 0 01123457889999999999976320 01124445555555555555445555
Q ss_pred HHHHHHHHH
Q 000051 2289 KSAILSTLS 2297 (2612)
Q Consensus 2289 k~~al~~L~ 2297 (2612)
|..|..+|.
T Consensus 591 Ri~AA~aL~ 599 (728)
T KOG4535|consen 591 RIRAAAALS 599 (728)
T ss_pred eehhhhhhc
Confidence 555555544
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.032 Score=71.39 Aligned_cols=249 Identities=19% Similarity=0.201 Sum_probs=145.1
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCccc
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEV 2188 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~ 2188 (2612)
+...+..|.+.+.+.....|..++..+..++... .-.+.+..-...++.++. +.|..+|+.|.+-|-.++..
T Consensus 327 l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~--~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~----- 399 (938)
T KOG1077|consen 327 LSRAVNQLGQFLSHRETNIRYLALESMCKLASSE--FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV----- 399 (938)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc--chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-----
Confidence 4555666666666666777777777776666431 111222233455566666 77777777777776666543
Q ss_pred cccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhc
Q 000051 2189 QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEF 2268 (2612)
Q Consensus 2189 l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~ 2268 (2612)
.....|+.-+++-|.+.+...|+....-++-+.+... ....=|
T Consensus 400 ------------------------------------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy~Wy 442 (938)
T KOG1077|consen 400 ------------------------------------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDYSWY 442 (938)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCcchh
Confidence 2233445555666666677778877776777776653 344445
Q ss_pred hhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH---Hhc
Q 000051 2269 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL---SAL 2343 (2612)
Q Consensus 2269 v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L---~~~ 2343 (2612)
|+.+. -|+++.++..++++=.-.++.+. -...+++|. ...+...|+.+ ++.+-..++..||.+ ++-
T Consensus 443 VdviL-qLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 443 VDVIL-QLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD 513 (938)
T ss_pred HHHHH-HHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC
Confidence 55443 57888887655544221111100 011122221 22344556665 677778888888887 333
Q ss_pred cCChhH--HHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2344 STRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2344 ~~~~~~--~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
.|+..+ .+.-+...+....+..|...+..+-.++... ++..+.++.........-|.+++..+.+-|.
T Consensus 514 ~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 514 DPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred CCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 455544 3455566665555667777777777666543 5667777777776666567777766666543
No 89
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.13 Score=66.77 Aligned_cols=287 Identities=21% Similarity=0.232 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhh
Q 000051 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV 1712 (2612)
Q Consensus 1633 ~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~v 1712 (2612)
......|.-++|-+-...| .++...|.+.|++.+...+|.+++-++|-.. +|... .++...+...+...+.-.
T Consensus 393 ~y~EGGalyAlGLIhA~hG----~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa~-~eiYe~lKevLy~D~Avs 465 (929)
T KOG2062|consen 393 GYKEGGALYALGLIHANHG----RGITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSAN-EEIYEKLKEVLYNDSAVS 465 (929)
T ss_pred CccccchhhhhhccccCcC----ccHHHHHHHHHHhccchhhhhhhhhhccchh--ccccc-HHHHHHHHHHHhccchhh
Confidence 3444567777877655544 4477788888888878889999988776543 33321 223333333333333333
Q ss_pred HhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHH
Q 000051 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791 (2612)
Q Consensus 1713 R~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~-~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~v 1791 (2612)
-+++-..++.+-.-... .+.+.-++.+..+. ++.+.... ..+-.+ ..|+... ..-|.+.+.+.|++.-.
T Consensus 466 GEAAgi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl-~vGiaL-~~ygrqe--~Ad~lI~el~~dkdpil 535 (929)
T KOG2062|consen 466 GEAAGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGL-AVGIAL-VVYGRQE--DADPLIKELLRDKDPIL 535 (929)
T ss_pred hhHHHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHH-HHhHHH-HHhhhhh--hhHHHHHHHhcCCchhh
Confidence 34443333333221111 23444444444432 23332221 111111 2233221 12233445556666667
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH-HccCCCHHHHHHHHHHHHH
Q 000051 1792 RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKT 1870 (2612)
Q Consensus 1792 R~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~-~~~D~~~~VR~aA~~~l~~ 1870 (2612)
|.+.+-.++-- +. |. ..+..+..+.. ..+|.+..||++|+-.++-
T Consensus 536 R~~Gm~t~alA-y~--------------------------------GT-gnnkair~lLh~aVsD~nDDVrRaAVialGF 581 (929)
T KOG2062|consen 536 RYGGMYTLALA-YV--------------------------------GT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGF 581 (929)
T ss_pred hhhhHHHHHHH-Hh--------------------------------cc-CchhhHHHhhcccccccchHHHHHHHHHhee
Confidence 76654333211 11 11 01122222322 3689999999999999998
Q ss_pred HHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1871 IVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1871 l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
+.-..|.. .+.++..|. +-|+.+|..++-+||-.|...|.. ..+..|.....|+..-|||++|.+++-
T Consensus 582 Vl~~dp~~--------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 582 VLFRDPEQ--------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred eEecChhh--------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 87766653 333344444 568999999999999999877754 445556666678888999999999999
Q ss_pred HHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHH
Q 000051 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982 (2612)
Q Consensus 1950 li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr 1982 (2612)
|+.++.+ .+-+-+..+...+.+.+.|.+++.-
T Consensus 651 Im~Q~t~-~~~pkv~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 651 IMIQQTE-QLCPKVNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred HHHhccc-ccCchHHHHHHHHHHHhhhhhhHHH
Confidence 8877654 3445566777777778887766543
No 90
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0016 Score=82.28 Aligned_cols=244 Identities=21% Similarity=0.203 Sum_probs=145.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000051 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2612)
Q Consensus 1738 iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2612)
+...+..+..|.+..||..|.+++-.+-+ +-+.-..+.....+.+.|++..+|.++++++.-+-+..++..
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~------- 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL------- 269 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc-------
Confidence 44446677788889999999998766554 222223345555677899999999999999987765543211
Q ss_pred CCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHH-HHHHHHHHHhcC
Q 000051 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS 1896 (2612)
Q Consensus 1818 ~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~-~ll~~L~~~L~~ 1896 (2612)
+.+.. + ....+..+..++....|.++.||-.|.+.+|.+-.... +++. ++-+.++..+..
T Consensus 270 --e~e~~--e-----------~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe----e~i~QTLdKKlms~lRR 330 (823)
T KOG2259|consen 270 --ERESE--E-----------EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE----EIIQQTLDKKLMSRLRR 330 (823)
T ss_pred --cchhh--h-----------hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH----HHHHHHHHHHHhhhhhh
Confidence 00000 0 11335677778888899999999999999987755332 2222 222333332210
Q ss_pred -CCHHHHHHHHHHHHHHHHH--hchhh--------hhhHH-----HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHH
Q 000051 1897 -SSSERRQVAGRALGELVRK--LGERV--------LPSII-----PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960 (2612)
Q Consensus 1897 -~~~~~R~~A~~aL~~lv~~--~~~~~--------l~~ll-----p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~ 1960 (2612)
.....|-.....=|++... .+..+ -..++ ..+..++.|+-.+||.++...++.+..+..+
T Consensus 331 kr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---- 406 (823)
T KOG2259|consen 331 KRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---- 406 (823)
T ss_pred hhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----
Confidence 0000011111111111000 00000 01122 3466778888888888888888887554332
Q ss_pred HhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCC
Q 000051 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2612)
Q Consensus 1961 ~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2612)
|....+..+..+++|...+||..|..++..+..+.. .-++.++.+++.|++..
T Consensus 407 -FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~--i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 407 -FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA--IREEQLRQILESLEDRS 459 (823)
T ss_pred -cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe--ecHHHHHHHHHHHHhcC
Confidence 334556777788888888888888888888876632 33567777777776543
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.045 Score=70.12 Aligned_cols=351 Identities=15% Similarity=0.204 Sum_probs=194.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHH
Q 000051 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLL 1425 (2612)
Q Consensus 1347 ~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~-~~v~~ilp~l 1425 (2612)
..+++|.++..+...+..++..- .+-.+ .++..+++-+.+. |+...-.|+.+++.+. ++.|. .|..++ |.+
T Consensus 83 Lss~kysEKqIGYl~is~L~n~n-~dl~k--lvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~DI-~Kl 154 (938)
T KOG1077|consen 83 LSSNKYSEKQIGYLFISLLLNEN-SDLMK--LVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADDI-PKL 154 (938)
T ss_pred hhcCCccHHHHhHHHHHHHHhcc-hHHHH--HHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhhh-HHH
Confidence 34556777666666666666542 11111 2344444444444 5555555655555543 33332 233332 322
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHH
Q 000051 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2612)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L 1504 (2612)
+ .-++..+.||+.++-|+-.+....++- ........++..|++.+.++-.++..++..++...|+....+++.-+..|
T Consensus 155 L-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L 233 (938)
T KOG1077|consen 155 L-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRL 233 (938)
T ss_pred H-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHH
Confidence 2 226778899999999998888774433 22456677788889988888888999999998888887777766666555
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcC---CCChhHH--HHHHHHHhccccccCChhhHhhHHH
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT---DPNDHTK--YSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~---d~~~~~r--~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
...........++. .-..+++|.+..-+=.+++..- |+....| ++++.+..
T Consensus 234 ~riv~~~~t~~qdY-------Tyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLn----------------- 289 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDY-------TYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILN----------------- 289 (938)
T ss_pred HHHHhhcccchhhc-------eeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHh-----------------
Confidence 44332111111000 0011223333221111222211 1111111 22222211
Q ss_pred HHHHhhcC----CCH---HHH-HHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1580 IVHRGLRE----RSA---ETK-KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1580 ~L~~~l~d----~s~---~vr-~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
..++ .+. ..+ ....+++. ++..+... ...+...+..|-+.+.+....+|--|.+.+..++.. +
T Consensus 290 ----k~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e---~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~ 360 (938)
T KOG1077|consen 290 ----KAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSE---PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-E 360 (938)
T ss_pred ----ccccCccccchHhhhhHHHHHHHHHH-HHHHcCCc---HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-c
Confidence 1110 000 011 11122222 22222221 223455677777778888899999999988888875 2
Q ss_pred CC--CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1652 EE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1652 ~~--~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.. ....-.+.++..|+.+.+..+|+.+..-|-.++. .+..+.++..+++.+...++.+|+....-..-+++.+..
T Consensus 361 ~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 361 FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 11 2223355667777766666688887766555443 344567788888888888999999888777888888877
Q ss_pred chhhhHHhHHHHH
Q 000051 1730 QFQNYLQQVLPAI 1742 (2612)
Q Consensus 1730 ~f~p~l~~iip~l 1742 (2612)
++.=|+.-++..+
T Consensus 438 Dy~WyVdviLqLi 450 (938)
T KOG1077|consen 438 DYSWYVDVILQLI 450 (938)
T ss_pred CcchhHHHHHHHH
Confidence 7766665555443
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00036 Score=87.79 Aligned_cols=227 Identities=19% Similarity=0.197 Sum_probs=151.7
Q ss_pred HHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-h--------c
Q 000051 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-T--------T 1771 (2612)
Q Consensus 1701 l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~-~--------~ 1771 (2612)
+...+.+.++.||..+...+-.+.. |-.+. ..+.....+.++|+++.||.+|.+.+...-+.++ + +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--ccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 4445567788999999988888776 32211 2355677788999999999999988876665551 1 1
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHH-------H-----hcC---------------------CcccccccCC
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF-------K-----VAG---------------------TSGKALLEGG 1818 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~-------~-----~~~---------------------~~~~~~~~~~ 1818 (2612)
..+..+..+-..+.|..|.+|..+.+++|.+=. + +.+ .+||.+.++.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 345566677788899999999999999987621 0 000 0011110000
Q ss_pred -CCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCC
Q 000051 1819 -SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897 (2612)
Q Consensus 1819 -~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~ 1897 (2612)
.+++++.. ..+++. | -..++..++.|.-.+||.+|+..++.++.+.|. +....+..|+..++|.
T Consensus 358 psee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 358 PSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFNDE 422 (823)
T ss_pred chhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhccH
Confidence 00000000 001110 0 112233356788889999999999999988775 3445677788889999
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
...+|..|..+|..+.... .+....++.+...|.|.++++|.+.-..|+.
T Consensus 423 ~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999988762 3456777888888889999999887665553
No 93
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.35 Score=66.39 Aligned_cols=182 Identities=18% Similarity=0.286 Sum_probs=124.9
Q ss_pred chhhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh
Q 000051 2227 LQPLLPIFLQGLI----SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2227 l~~ilp~l~~~L~----~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~ 2302 (2612)
+..+.|++.++.. .++|+.+.+|..+++.+.--.. . |-..-.+-|+.++....++-+|..+.-++|.++-.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa-~----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA-E----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH-H----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3457788888884 4679999999999999873321 2 22233444678887666788999999999999999
Q ss_pred cCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcC
Q 000051 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAG 2381 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~-~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g 2381 (2612)
.|..+.||.+ .+...|.|++..||..|...|.+|+-- .-++..+++++.-.+.+++.+++.-+=..++|+-++.
T Consensus 992 fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~- 1066 (1251)
T KOG0414|consen 992 FPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG- 1066 (1251)
T ss_pred cccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-
Confidence 8887777654 556789999999999999999999532 2245567899999999999999888777777776553
Q ss_pred CCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2382 KSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
..+ =...+.|+.-|.+. .=..+..+...-.+||.+-+
T Consensus 1067 n~i-ynlLPdil~~Ls~~-~l~~~~~~~vm~~li~~ikk 1103 (1251)
T KOG0414|consen 1067 NTI-YNLLPDILSRLSNG-NLEEESYKTVMEFLIGLIKK 1103 (1251)
T ss_pred cch-hhhchHHHHhhccC-cccchhhHHHHHHHHHHhcc
Confidence 211 12233333332221 11234555555555555443
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.86 E-value=0.017 Score=78.27 Aligned_cols=370 Identities=15% Similarity=0.156 Sum_probs=203.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHh
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ 1458 (2612)
.+..++... +.-.| .++..+..+++...-...-.-..+++.+..++...+..+.-.+...++.+.-.-... .-..
T Consensus 254 k~~~l~~kQ-eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 254 KLQTLIRKQ-EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHH-HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344444443 34444 556667777765542222223478899999998888888888888887774321111 2266
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh---hH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EI 1535 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i 1535 (2612)
++|.|...+.+++-.....++.+|.++++...-.-.-.-.+++|.+..++.|+ ..|..|...|..++..-... ..
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh
Confidence 88999999998888889999999999987533222222246889999999875 45566777777776532211 11
Q ss_pred hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC-
Q 000051 1536 ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP- 1610 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~i~~~--~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~- 1610 (2612)
...+|.+.+.+. .++..+. +.+..++..........- .-..+-..+.+.++.+++ .....+.|++..-+..
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHH
Confidence 346777777653 3444433 222222211000000000 001111122233333332 2345677776642111
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-----Cc--hhhHHHHHHHhccCCC-HHHHHHHHHHH
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQGL 1682 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-----~~--~~ll~~L~~~L~~~~~-~~~R~~aa~~L 1682 (2612)
..+.+|+..++ ..+...+ -......|+|.++...-++ .+ ..++|++.+.|..... ......+...+
T Consensus 486 ~~f~~~i~~L~----~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 486 ELFVDFIGDLA----KIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred HHHHHHHHHHH----HHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 12344444333 3343332 2356777777777643222 12 3688999998875532 22444555556
Q ss_pred HHHHHHhChhh-H--HhHhHHHHHhccCC--ChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHH
Q 000051 1683 SEVLAALGTVY-F--EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRD 1755 (2612)
Q Consensus 1683 ~~i~~~~g~~~-l--~~llp~l~~~~~~~--~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~ 1755 (2612)
|.++..-.... + ..+++.++..+.+. +.+.--..+.+|..+... +......+ ..+...++..+.|.+..||.
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 65543211111 1 35666666666543 444444445555555443 22111111 34777888999999999999
Q ss_pred HHHHHHHHHHH
Q 000051 1756 AALGAGHVLVE 1766 (2612)
Q Consensus 1756 ~Al~al~~lv~ 1766 (2612)
.|-.++..+.+
T Consensus 639 ~~d~~Ldii~e 649 (708)
T PF05804_consen 639 VCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHH
Confidence 99888876554
No 95
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.86 E-value=0.00076 Score=82.48 Aligned_cols=198 Identities=19% Similarity=0.158 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhh--hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~--~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
...++..++..+...+....|.+|...|-.+...-+..... ...++..+.+.+.+..+...|..|+..++.+++.-+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 35567777777776666778888888777666543322221 1256666777787755888999999999999998888
Q ss_pred cchhhHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc-
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~-VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p- 1490 (2612)
.|..+....+..++.+-.|.++. +|.++..|+..+.+..+-..+..+-|.++. .+...-..++..+-.+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 89999999999999999998765 566667778888888888888888887766 233333445556677776544
Q ss_pred hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHh
Q 000051 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2612)
Q Consensus 1491 ~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2612)
+.+...++++.|.+++..+.+...||+.|+.||..+...++..++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 4577788999999999999999999999999999999888744433
No 96
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.28 Score=63.75 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=102.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH-hcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHH
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-IGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL 2314 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~-l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL 2314 (2612)
+.+.+.++-.|...+.+++----.+|. . ..+..|+.+ ++|. +.+||.+|..+||-++-+- |..
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgn--n-----kair~lLh~aVsD~-nDDVrRaAVialGFVl~~d--------p~~ 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGN--N-----KAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRD--------PEQ 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCc--h-----hhHHHhhccccccc-chHHHHHHHHHheeeEecC--------hhh
Confidence 344556778888877776654444442 1 122223444 4554 8899999999999776543 445
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHH
Q 000051 2315 QTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVY 2393 (2612)
Q Consensus 2315 ~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~ 2393 (2612)
.+..+..|+++ |+.||..||.+||......+. ..-+.-|=....++..=||+.++-|+.-|.-...+... +-...+.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~-pkv~~fr 667 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLC-PKVNGFR 667 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccC-chHHHHH
Confidence 55666778887 999999999999987553332 22222222233455567999999999998876655443 3445556
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHH
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILG 2416 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg 2416 (2612)
..+.+.+.+.+++.-.....+|+
T Consensus 668 k~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 668 KQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Confidence 66667777766655443444443
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.79 E-value=0.0032 Score=80.64 Aligned_cols=239 Identities=18% Similarity=0.145 Sum_probs=152.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
.++.+...+....+..++..+..++... -+ + ..+..++..+.|.++.||..+..+++.+ .-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------~~~~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---ED----A---LDLRSVLAVLQAGPEGLCAGIQAALGWL-------GGRQ 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----h---HHHHHHHHHhcCCCHHHHHHHHHHHhcC-------CchH
Confidence 4555666664333566665554433221 11 1 2377788899999999999999998765 2345
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhH
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~i 1538 (2612)
..+.|+..|.+.+..+|..++.+++..- ..-.+.+...++|.++.||..|+.+|+.+... ..
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a 179 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-------LS 179 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cc
Confidence 5677788888889999988887777522 12245677788899999999999999988753 34
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH
Q 000051 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2612)
Q Consensus 1539 vp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l 1617 (2612)
+|.|...+.|++..+| .|+..+... +. ....+.+.....+.....+..+..++... +.
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~l------G~---~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~-------- 238 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLA------GS---RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG-------- 238 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHc------CC---HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------
Confidence 5667777888888888 455555431 11 11223334333444444444444444432 22
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i 1685 (2612)
+..++.|..++.++. +|..++.++|.+.. +..++.|++.+.++. .+..+.+++..|
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777788887754 89999999887543 456777777665442 555555555444
No 98
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.79 E-value=0.0024 Score=81.83 Aligned_cols=242 Identities=18% Similarity=0.082 Sum_probs=145.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
.++.++..|...++...+..++.++...- ....++.+.+.+.+. +..+|.++..+++.+-
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~---------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE---------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC---------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----------
Confidence 44455555544444444444444432110 012355666666666 5667777777666432
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000051 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2612)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L 1497 (2612)
-....+.++..++++++.||.++..++...- ..-.+.+...|++.+..+|..++.+||.+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 1244566666777778888877665554421 1223456666677777888888888877643
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~i 1577 (2612)
...+|.|...+.|.++.||.+|..++..++. + .-++.+.....++....+..+...... .+. ...
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal-----~~~---~~a 241 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAV-----AGG---PDA 241 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHh-----CCc---hhH
Confidence 3345566778999999999999999988764 1 223344443334443333222111110 011 145
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1578 ip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
++.|...++++ .+|..+..++|.+. ++ ..++.+...+.|+. ++..|..++..+..
T Consensus 242 ~~~L~~ll~d~--~vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 242 QAWLRELLQAA--ATRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHhcCh--hhHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 66777777775 48999999998764 32 26777888887753 99999999988765
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.79 E-value=0.002 Score=82.66 Aligned_cols=235 Identities=25% Similarity=0.280 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000051 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~ 1430 (2612)
++..|..+++.++.+-. ...++.+...+.+. ++.+|..|..+++.+.. ...+|.++..+.
T Consensus 56 ~~~vr~~aa~~l~~~~~---------~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~ 115 (335)
T COG1413 56 DLLVRLSAAVALGELGS---------EEAVPLLRELLSDE-DPRVRDAAADALGELGD----------PEAVPPLVELLE 115 (335)
T ss_pred CHHHHHHHHHHHhhhch---------HHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC----------hhHHHHHHHHHH
Confidence 45566666655332221 13445555555555 45666666554433211 133444444444
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcC------------CChhhHHHHHHHHHHHHhhCchhhhhhh
Q 000051 1431 -DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED------------KAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2612)
Q Consensus 1431 -D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~------------~~w~~r~~a~~~L~~ia~~~p~~l~~~L 1497 (2612)
|++..||..+..++..+-. ...++.+++.+++ ..|..|..+...++.+..
T Consensus 116 ~d~~~~vR~~aa~aL~~~~~-------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---------- 178 (335)
T COG1413 116 NDENEGVRAAAARALGKLGD-------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---------- 178 (335)
T ss_pred cCCcHhHHHHHHHHHHhcCc-------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----------
Confidence 5666666666666555521 1223334444433 225667777777776543
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhh
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
+..++.+.+.+.|....||.+|..+|+.++... ..+.+.+...+.|++..+| .++..++.. ....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~---------~~~~ 244 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLALGEI---------GDEE 244 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHhccc---------Ccch
Confidence 445567788899999999999999999988642 3556777777888887777 455555431 1123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
..+.+..++.+.++.++..+....+.. . .......+...+.|..+.+|..+..+++....
T Consensus 245 ~~~~l~~~l~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 245 AVDALAKALEDEDVILALLAAAALGAL-----D-------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHHhccchHHHHHHHHHhccc-----C-------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 455666666666666666655544411 0 11133444555667777778777777776544
No 100
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.018 Score=71.55 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhchh-hh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1921 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~-~l 1921 (2612)
.++..+.....|++..+|..|+..++..+...|...+.+.+.++..++..|-|. +.++...+..+|..+....... ..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 345555556789999999999999999999999999999999999998888754 5788888899998888776443 55
Q ss_pred hhHHHHHh---hhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH---HHhcCCcHHHHHH
Q 000051 1922 PSIIPILS---RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR---TALCDSILEVRES 1984 (2612)
Q Consensus 1922 ~~llp~L~---~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~---~~L~D~d~~Vr~~ 1984 (2612)
+.++++-. ....+.+++.|.++...+|.+....++..-..|.+++...+. -.+.|+++.|-.+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 56666543 456788999999999999998777776544444444443332 3567888876543
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.69 E-value=0.0062 Score=78.15 Aligned_cols=184 Identities=26% Similarity=0.325 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
...+.++..+.|++..+|..+...++.+ +-+..+|.+...+.+.++.+|..++.+|+.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4677788889999999999887775444 557889999999999999999999998887642 45
Q ss_pred hHHHHhhhhc-CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCC------------hhHH-HHHHHHHhccc
Q 000051 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2612)
Q Consensus 1500 ivp~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~------------~~~r-~al~~L~~~~~ 1565 (2612)
.+|.+.+++. |.+..||..|..+|+.+...- -++.++..+.|+. ..+| .+...++..
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5667777777 799999999999999887532 2444555555543 1233 233333220
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
......+.+.+.+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..+..++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234556667777777778888877777765421 2356677777778888888887777765
Q ss_pred H
Q 000051 1646 L 1646 (2612)
Q Consensus 1646 L 1646 (2612)
+
T Consensus 240 ~ 240 (335)
T COG1413 240 I 240 (335)
T ss_pred c
Confidence 4
No 102
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.16 Score=66.66 Aligned_cols=314 Identities=15% Similarity=0.137 Sum_probs=159.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHH
Q 000051 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2612)
Q Consensus 1382 ~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp 1461 (2612)
.+.+..+++ |.-.|...-.+++.++.... -+.-+...+.+-++..++..|-.|..++-.+....--+++..++.
T Consensus 68 ~~tKlfQsk-d~~LRr~vYl~Ikels~ise-----dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~k 141 (865)
T KOG1078|consen 68 AITKLFQSK-DVSLRRMVYLAIKELSKISE-----DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMK 141 (865)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHhhccccch-----hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 345555665 55566655555555443221 122334444444555566777776666655544433334444443
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHh--hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHH
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAY--CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~--~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~iv 1539 (2612)
..+ -+....... ..++..+.. ...+........+.+ ...+.+..||..|..-|.++.+.-+ -.+..++
T Consensus 142 qai---vd~~~avSs--aalvss~hll~~~~~~vkrw~neiqe----a~~s~~~m~QyHalglLyqirk~dr-la~sklv 211 (865)
T KOG1078|consen 142 QAI---VDKNPAVSS--AALVSSYHLLPISFDVVKRWANEVQE----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLV 211 (865)
T ss_pred hHe---eccccccch--HHHHHHhhhhcccHHHHHHHHHhhhh----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 322 222221111 112222221 223333333333332 2333355677777776666654211 0112222
Q ss_pred HHHHh-hcCCCChh---HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1540 PTLLM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1540 p~Ll~-~l~d~~~~---~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
..+.. .+.+|-.. +|.+.+.+-. . ......+.|.+.+.+.+....+-..|+..+..+... .+.++.|
T Consensus 212 ~~~~~~~~~~~~A~~~lir~~~~~l~~------~-~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p 282 (865)
T KOG1078|consen 212 QKFTRGSLKSPLAVCMLIRIASELLKE------N-QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP 282 (865)
T ss_pred HHHccccccchhHHHHHHHHHHHHhhh------c-ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch
Confidence 22222 12222111 1211111111 1 233445778888888888888888888888877653 2234444
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2612)
.+..+.-.+..+.+.+|-+|.+.|..++...+.... ..=.. ++.+-++. .|.-+.-++..+++.......+
T Consensus 283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~cN~e-lE~lItd~---NrsIat~AITtLLKTG~e~sv~ 353 (865)
T KOG1078|consen 283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VCNLD-LESLITDS---NRSIATLAITTLLKTGTESSVD 353 (865)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-ccchh-HHhhhccc---ccchhHHHHHHHHHhcchhHHH
Confidence 566677778899999999999999999887654310 00001 12222222 4566666677777665555556
Q ss_pred hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1696 ~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.++..+-....+-+.+.+-....++..++..++.
T Consensus 354 rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 354 RLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred HHHHHHHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 6666655555554555554555555555555543
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.46 Score=64.27 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=117.4
Q ss_pred hcCCChhhHHHHHHH-HHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhh
Q 000051 1467 LEDKAWRTKQSSVQL-LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 1545 (2612)
Q Consensus 1467 L~~~~w~~r~~a~~~-L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~ 1545 (2612)
+.+++...|..|+.- +..|..+.. ++.++|.+++.....+.++++..--=|..+++.-+ .+.--.++.+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhh
Confidence 555555666666554 455554432 45566666666666688999988888888887543 2334567888889
Q ss_pred cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhh-hHHH
Q 000051 1546 LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL-LLPE 1623 (2612)
Q Consensus 1546 l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~-ll~~ 1623 (2612)
++||++.+| .|+..+.... ....+..+++.+.+.++|+++.||+.|+.++..+.+. ++ ++ |.+. ....
T Consensus 101 l~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~l--~~~~g~~~~ 170 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-DL--YHELGLIDI 170 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-hh--hhcccHHHH
Confidence 999999999 5777665311 2345567889999999999999999999999998875 21 11 2233 5666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1624 VKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1624 L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+..++.|.+|.|-..|..++..+-..
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77778899999999988888777554
No 104
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.096 Score=67.86 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC-
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK- 1933 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~- 1933 (2612)
|.+..-|+.-++.++..+.++|. +...+++.++++++|.++..-......+.+.+++++. ....++..+.+.+.
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETFPQ 444 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhhhh
Confidence 33445666677777777777764 4566777888889999987777777777777776543 22233333333222
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 000051 1934 DPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~ 1952 (2612)
-....+-.++++.+|+-+.
T Consensus 445 irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 445 IRSSKICRGALWILGEYCE 463 (948)
T ss_pred hcccccchhHHHHHHHHHh
Confidence 1344555677777777543
No 105
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0088 Score=74.07 Aligned_cols=232 Identities=18% Similarity=0.214 Sum_probs=152.2
Q ss_pred cchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc
Q 000051 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2612)
Q Consensus 1296 ~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2612)
+-+..++..+..-..||+..+|..++.+|+......+++. ...++.++..|.+..+..+-..+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 5577888888888999999999999999998876654433 456677777777777778888999999988876554
Q ss_pred chhhhh--cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH----HHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000051 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI----QMLPLLLVAFSDQVVAVREAAECAAR 1445 (2612)
Q Consensus 1372 ~~l~~~--~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~----~ilp~ll~~l~D~~~~VR~aa~~al~ 1445 (2612)
..+..+ ++.-.+..+..+. ++..|.+|..+|+.++...|+..+.+.. +-+..++-.+.|++|.|-.|+...++
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 444322 4555666777776 6889999999999999988865544332 22334555678999999888877776
Q ss_pred HHHHhhcHHhHHhHHH--------------------------HHHhhh-------cCCCh-hhHHHHHHHHHHHHhhCch
Q 000051 1446 AMMSQLSAQGVKLVLP--------------------------SLLKGL-------EDKAW-RTKQSSVQLLGAMAYCAPQ 1491 (2612)
Q Consensus 1446 ~i~~~l~~~~v~~ilp--------------------------~Ll~~L-------~~~~w-~~r~~a~~~L~~ia~~~p~ 1491 (2612)
.+...+.-+....+++ .++..+ -+..| .+|.++...-+........
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 6655433322222222 222111 13467 3444444433433332211
Q ss_pred hhhhh--hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1492 ~l~~~--L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
+.-.+ ...+...+-.+..|+-++|+..|.+|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 11111 23445566667789999999999999887653
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.60 E-value=6.8e-05 Score=67.23 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1472 w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
|++|.+|+.+||.++...++.+..+++.++|.|..+|+|+++.||.+|+.||+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
No 107
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.82 Score=62.00 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=86.5
Q ss_pred cCCCHHHHHHHHH-HHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1854 SDVSLSVRQAALH-VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~-~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
...+...|..|++ ++..+.. |. .++.+++.+++...+.+.+.+....-=+-...+.- +.-.-..++.+.+-+
T Consensus 29 ~s~n~~~kidAmK~iIa~M~~--G~----dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~lLavNti~kDl 101 (757)
T COG5096 29 ESSNDYKKIDAMKKIIAQMSL--GE----DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELALLAVNTIQKDL 101 (757)
T ss_pred cccChHHHHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhc
Confidence 3334444544444 4444443 22 25666666777777777777766555444433322 222334556777788
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~ 1994 (2612)
.|+++.+|..|+..++.+ ...+.++.+++.+++++.|+++.||..|+-|+..+.+
T Consensus 102 ~d~N~~iR~~AlR~ls~l-------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 102 QDPNEEIRGFALRTLSLL-------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred cCCCHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 999999999999888765 2345678899999999999999999999999998875
No 108
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.18 Score=66.14 Aligned_cols=298 Identities=17% Similarity=0.144 Sum_probs=174.3
Q ss_pred hhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q 000051 1288 AKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK 1367 (2612)
Q Consensus 1288 a~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~ 1367 (2612)
++.++........+++.+-..+++..+.|...++.++-.+-......... ....++.+.++.+...|..|.+.|..++.
T Consensus 233 ~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 233 SELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred HHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34444444445667788888899999999998888775543222222222 23456666777778999999999999998
Q ss_pred hhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000051 1368 GFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2612)
Q Consensus 1368 ~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2612)
..+..... .-.-|..++.+. .|--|..++..+...-.. ..+..++..+-..+.|-+..-.....++++.+
T Consensus 312 ~~P~~v~~---cN~elE~lItd~----NrsIat~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sL 381 (865)
T KOG1078|consen 312 KHPQAVTV---CNLDLESLITDS----NRSIATLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSL 381 (865)
T ss_pred hCCccccc---cchhHHhhhccc----ccchhHHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHH
Confidence 77654332 122355556554 255677788777765432 33334444443333333333333344455555
Q ss_pred HHhhcHHhHHhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1448 MSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1448 ~~~l~~~~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
...++.. ...+++.|...|. +.....|++.++++..+++..|++-..-+.. |+....|. +-+.-+.+-|+.+
T Consensus 382 c~~fp~k-~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~----LCefIEDc--e~~~i~~rILhlL 454 (865)
T KOG1078|consen 382 CLKFPRK-HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEH----LCEFIEDC--EFTQIAVRILHLL 454 (865)
T ss_pred HhhccHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHH----HHHHHHhc--cchHHHHHHHHHH
Confidence 4444433 2334444444443 4556778888888888877666543322222 33334442 3345566666666
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
+...+. ..+|+.++|.-++.+ -=.+..+|..|..++..++.
T Consensus 455 G~EgP~-------------a~~Pskyir~iyNRv-------------------------iLEn~ivRaaAv~alaKfg~- 495 (865)
T KOG1078|consen 455 GKEGPK-------------APNPSKYIRFIYNRV-------------------------ILENAIVRAAAVSALAKFGA- 495 (865)
T ss_pred hccCCC-------------CCCcchhhHHHhhhh-------------------------hhhhhhhHHHHHHHHHHHhc-
Confidence 654431 123444444222111 01245789999999988872
Q ss_pred cCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
+++ . ..+.+...+..++.|.+.+||..|.-.+..+-
T Consensus 496 -~~~-~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 496 -QDV-V---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -CCC-C---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 231 2 23457777888999999999999998888776
No 109
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.48 E-value=0.39 Score=65.50 Aligned_cols=160 Identities=20% Similarity=0.263 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh-H--hhHHHHHHhhcCCCC
Q 000051 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-I--ASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1474 ~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-i--~~ivp~Ll~~l~d~~ 1550 (2612)
.-+.++.+|.++++...-.....-..+++.|+++|+..+.++.-.+...|..++-.-.|.. + ..++|.|.+.+..++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 3446778889998876555444557899999999999899999999999999886544432 2 578999999998776
Q ss_pred hhHH-HHHHHHHhccccccCChhhH-hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHh
Q 000051 1551 DHTK-YSLDILLQTTFVNTVDAPSL-ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2612)
Q Consensus 1551 ~~~r-~al~~L~~~~~~~~i~~~~l-~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L 1628 (2612)
.... .++..|...+|.......-. ..++|.+...+.++ ..+..+..++.+++.. .+.+.+..|.+ .+|.+.+.+
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~Td-cIp~L~~~L 420 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTD-CIPQLMQML 420 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcc-hHHHHHHHH
Confidence 5544 57777776555544322211 24677788777765 3455677777776642 12223333333 455555544
Q ss_pred c-CCCHHHHH
Q 000051 1629 V-DPIPEVRS 1637 (2612)
Q Consensus 1629 ~-d~~~~VR~ 1637 (2612)
. .+.+.+..
T Consensus 421 l~~~~~~v~~ 430 (708)
T PF05804_consen 421 LENSEEEVQL 430 (708)
T ss_pred HhCCCccccH
Confidence 3 34444443
No 110
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.45 E-value=0.0048 Score=75.75 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=141.4
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCch
Q 000051 2233 IFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 2311 (2612)
Q Consensus 2233 ~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~l 2311 (2612)
.+++++.+. ..+.+..|..-|-.+.-.-+-.....|+.+|.--++.++++..+...|..||..|+.+++.-+..+..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 344444433 3445555554333333222223445677888888899999977889999999999999999888888888
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHH
Q 000051 2312 PQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKI 2390 (2612)
Q Consensus 2312 pqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~ 2390 (2612)
..-+..++.+-.|.+ +.+|.++-.|+-.+..+.|- .-+.-+...+.+.|...-..+++.+..++........-...+
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~ 447 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP 447 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence 878888888888884 55555555556655555442 123334444444565555667888889988766544446778
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 000051 2391 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2612)
Q Consensus 2391 ~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2612)
.|...+.+..++.+..||..+..||-++...++.+++.|.+..+
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 88888888888889999999999999999999977777777644
No 111
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.16 Score=59.38 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHh-chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH----hHHHHHHHHHhcCCc
Q 000051 1904 VAGRALGELVRKL-GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1978 (2612)
Q Consensus 1904 ~A~~aL~~lv~~~-~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l----~~ll~~l~~~L~D~d 1978 (2612)
....||..+.+.. |....|.+.|.|+.++..++..|+.-+|..++.+++.+....+.+.+ ..+++.+..++..+|
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 3677788877665 44478999999999999999999999999999999988765554433 568888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHH
Q 000051 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 2058 (2612)
Q Consensus 1979 ~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~ 2058 (2612)
.+|-.+|.+.+.++... +..++-+.| ++..++.-+..|..-+ -+..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaakc-------------------ndiaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAAKC-------------------NDIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHhhh-------------------hhHHHHHHHH
Confidence 99999999988877532 112222221 1111111111111000 0112333443
Q ss_pred HHHHHhCC--Chhhh--HhhHHHHHHHhcCC-CCHHHHHHHHHHHHHhhhhc-cccc--HHHHHHHHHhhc--CCCChhH
Q 000051 2059 ALAEVAGP--GLNFH--LGTILPALLSAMGD-DDMDVQSLAKEAAETVTLVI-DEEG--VESLVSELLKGV--GDNQASI 2128 (2612)
Q Consensus 2059 ~La~~~g~--~l~~~--l~~il~~Ll~~L~~-~~~~vr~~a~~al~~l~~~~-~~~~--l~~ll~~Ll~~l--~~~~~~v 2128 (2612)
-+.+.+.- ....+ -..++..|...+.. ++.-++...++-...+...- +.++ ...+++.+...+ .|.+|--
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 33332211 11111 12355555555643 55555544444333333211 1111 223444444444 2456777
Q ss_pred HHHHHHHHHHHHHhc------ccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000051 2129 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2129 R~~A~~~L~~l~~~~------~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+..+....|.|+.+. +...-..++..+...+.++...|++..++|..+++.+..+
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 776777777776432 2233344566666777777788888999999999887654
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.0055 Score=70.11 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000051 2242 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2612)
Q Consensus 2242 ~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~ 2321 (2612)
++.+|..+..++|+++.+.+ ..+.||++. +...|.|. ++.||..++.+|..|....-. .+-+++...++++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~----l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i---k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPN----LYKCLRDE-DPLVRKTALLVLSHLILEDMI---KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHH----HHHHHCCC-CHHHHHHHHHHHHHHHHcCce---eehhhhhHHHHHH
Confidence 46789999999999998886 566666555 46777886 889999999999999875322 3346777788899
Q ss_pred hcCCCHHHHHHHHHHHHHHHhc-cC-ChhHHHHHHHHhhhc
Q 000051 2322 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 2360 (2612)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~~l~~Ll~~l~~ 2360 (2612)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366778888887754
No 113
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=1.3 Score=59.25 Aligned_cols=265 Identities=17% Similarity=0.220 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCC-----hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc-
Q 000051 1436 VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT- 1509 (2612)
Q Consensus 1436 VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~-----w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~- 1509 (2612)
-|+.-.+++-.+.+.+.+.....+...+-+.+.+.+ |..-..++..+..++....... ...+|.+++...
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~----~~~i~rl~~~~as 515 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE----STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch----hHHHHHHHHhccc
Confidence 455555555555555554444444454544554444 7777777777877776544433 334555555442
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH
Q 000051 1510 ----DTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2612)
Q Consensus 1510 ----D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~ 1583 (2612)
-.++..-..+...+|.++..+++ | ++...+|.|++.+..+
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s---------------------------------- 561 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS---------------------------------- 561 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc----------------------------------
Confidence 22666667777777777766653 2 3344444444443222
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----Cchh
Q 000051 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPD 1657 (2612)
Q Consensus 1584 ~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ 1657 (2612)
+.-..+...+..+|+. -+.++.||.++++..+.+.+.. -.+..|....+++|.+.....++ |+..
T Consensus 562 -------k~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~ 632 (982)
T KOG2022|consen 562 -------KESEQAISTLKTLCET--CPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK 632 (982)
T ss_pred -------hHHHHHHHHHHHHHHh--hhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 2223344447778874 3468999999999999998864 36778999999999999887733 5555
Q ss_pred hHHHHHHHhcc----CC-CH-HHHHHHHH--HHHHHHHHhChh-----------------------hHHhHhHHHHHhcc
Q 000051 1658 LVSWLLDALKS----DN-SN-VERSGAAQ--GLSEVLAALGTV-----------------------YFEHILPDIIRNCS 1706 (2612)
Q Consensus 1658 ll~~L~~~L~~----~~-~~-~~R~~aa~--~L~~i~~~~g~~-----------------------~l~~llp~l~~~~~ 1706 (2612)
++..++..+.. +- .. ..+..+.+ +++.+...+..+ .+.+++|.+-+.+.
T Consensus 633 lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 633 LINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 55555554432 11 12 12222222 244444432111 11233443333322
Q ss_pred --CCChhhHhHHHHHHHHhhhhhccch-hhhHHhHHHHHHhhcC
Q 000051 1707 --HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1707 --~~~~~vR~~~~~~l~~L~~~~g~~f-~p~l~~iip~ll~~L~ 1747 (2612)
.....+-++++..++.=....++.| .|+++.+.+-+.+...
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 1345566666666665566667778 8999999998888544
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.41 Score=62.39 Aligned_cols=426 Identities=17% Similarity=0.185 Sum_probs=205.0
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccCCcchH---
Q 000051 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH--- 1299 (2612)
Q Consensus 1223 ~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~--- 1299 (2612)
+.+...+..++..++.-+...+- .|...-+.+|.++--.+... +.+++.-.. +|-.+....+.+-.-.+
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~ml-nGe~~p~Llm~IiRfvlps~------~~elKKLly-~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALML-NGEDLPSLLMTIIRFVLPSR------NHELKKLLY-YYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHH-cCCCchHHHHHHhheeeccC------chHHHHHHH-HHHHHccccCCCcccHHHHH
Confidence 44556677777655554433322 34443344455544444431 123333333 33344443332221222
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcH
Q 000051 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2612)
Q Consensus 1300 ~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i 1379 (2612)
-+.+...+-|.+|++-+|-...+.+..+ ...+-.+.++|.+...|...+. -+|+.|..++..+-+.. ..-+ .+.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELlepl~p~IracleHrhs-YVRrNAilaifsIyk~~-~~L~--pDa 172 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELLEPLMPSIRACLEHRHS-YVRRNAILAIFSIYKNF-EHLI--PDA 172 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc--CcHHHhhhhHHHHHHHHhCcch-hhhhhhheeehhHHhhh-hhhc--CCh
Confidence 2456777888999999988766555433 1112235566666666665554 46888888888777651 1111 133
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
-+.+...+..+.|+..+..|.+.+-.. -+. .|..-+..+....+..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~---D~E--------------------------rAl~Yl~~~idqi~~~----- 218 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTT---DPE--------------------------RALNYLLSNIDQIPSF----- 218 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhc---CHH--------------------------HHHHHHHhhHhhccCc-----
Confidence 444555554455666665554432221 111 1111111111111100
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hHhhH
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASL 1538 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~i 1538 (2612)
+......-++++...+...|..-.. .+..+..+|..+++.|+-.|..+|..+.. +| .+..-
T Consensus 219 -----------~~~LqlViVE~Irkv~~~~p~~~~~----~i~~i~~lL~stssaV~fEaa~tlv~lS~---~p~alk~A 280 (948)
T KOG1058|consen 219 -----------NDSLQLVIVELIRKVCLANPAEKAR----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN---DPTALKAA 280 (948)
T ss_pred -----------cHHHHHHHHHHHHHHHhcCHHHhhH----HHHHHHHHHhcCCchhhhhhcceEEEccC---CHHHHHHH
Confidence 0001111233334433333332222 23334455555566666655555444432 22 22333
Q ss_pred HHHHHhhcCC-CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1539 VPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1539 vp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
...+++++.+ ++..+. --++.+.... ......+..++-.+.+.+..++-++|+++.++.-.+... .+
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss-rN------- 349 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS-RN------- 349 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-cc-------
Confidence 3344443322 112221 0111121111 112234555666777888889999999999988777653 12
Q ss_pred HhhhHHHHHHHh-------cCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000051 1617 IGLLLPEVKKVL-------VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2612)
Q Consensus 1617 l~~ll~~L~~~L-------~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2612)
...++..|.+-+ .+.....|..-.+++.+.+..++ ++-..++|.+++.+.+..+. .-.....-+.+++..+
T Consensus 350 vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-~~aatvV~~ll~fisD~N~~-aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 350 VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-EVAATVVSLLLDFISDSNEA-AASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHhC
Confidence 122333333332 24456778899999998887664 35567889999888765432 2233334455555544
Q ss_pred ChhhHHhHhHHHHHhccC-CChhhHhHHHHHHHHhhhhhc
Q 000051 1690 GTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLG 1728 (2612)
Q Consensus 1690 g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~l~~L~~~~g 1728 (2612)
..-+ ..++..++..+.. ....+-+++++.+|..+...+
T Consensus 428 p~Lr-~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 428 PNLR-ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred chHH-HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 3211 1122222222111 233444677777777665543
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=1.3 Score=58.35 Aligned_cols=360 Identities=18% Similarity=0.213 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i-~~~~~~~~R~~Al~al~~L~~~~~~~ 1413 (2612)
..+.|+.+.+.+..+.-...||.|+.||..+++.+....... . |+.+.+.+ .|..|+..-..++. +++....
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~Ld---Tl~il~~-- 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALD---TLLILTS-- 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHH---HHHHHHh--
Confidence 356788888888877767889999999999998654333221 1 22223333 23334433333332 2222111
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREA---AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~a---a~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p 1490 (2612)
.|..|.|-+. +.+....++..+-. -+..+..++..++..++.+|..+++++.++..+-|
T Consensus 93 ----------------~dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 93 ----------------HDDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred ----------------cCcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 1212222111 11111122111100 14455667778888999999999999999999988
Q ss_pred hhhhhh---hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh----hHhhHHHHHHhhcCCC-----ChhHHHHHH
Q 000051 1491 QQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDP-----NDHTKYSLD 1558 (2612)
Q Consensus 1491 ~~l~~~---L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~ivp~Ll~~l~d~-----~~~~r~al~ 1558 (2612)
..+... +|.-+..++.+|.|++.-+|..+.--|..+.+..++- .++.++..|+..+... .-.+.+|+.
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 776554 5778889999999999999999999999988764421 2356677777776432 122446765
Q ss_pred HHHhc--------ccccc-CChhhHhhHHHHHHHhh-cCCCHHHHHHH-----HHHHHHHhhccCCCCcc------hhhH
Q 000051 1559 ILLQT--------TFVNT-VDAPSLALLVPIVHRGL-RERSAETKKKA-----AQIVGNMCSLVTEPKDM------IPYI 1617 (2612)
Q Consensus 1559 ~L~~~--------~~~~~-i~~~~l~~iip~L~~~l-~d~s~~vr~~a-----~~~l~~l~~~~~~~~~l------~~~l 1617 (2612)
.+... .|... ---|.+..++|.+.-+- ....|...+.+ .+++..+..- +.+... .-.-
T Consensus 235 ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 235 LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHH
Confidence 44320 11111 00122222333332221 11245544433 2333333221 111111 1112
Q ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC----------Cch----hhHHHHHHHhccCCCHHHHHHHHHH
Q 000051 1618 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQG 1681 (2612)
Q Consensus 1618 ~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~~----------~~~----~ll~~L~~~L~~~~~~~~R~~aa~~ 1681 (2612)
..++..|...+.++ ..+|+..+..+++.+++..... +++ .++-.++....+..+...|...+.+
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 34677777777665 4678888888888887753211 122 2333333334444566788887777
Q ss_pred HHHHHHHhChhhHHhHhHHHHHhccCCCh-hhHhHHHHHHH
Q 000051 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFK 1721 (2612)
Q Consensus 1682 L~~i~~~~g~~~l~~llp~l~~~~~~~~~-~vR~~~~~~l~ 1721 (2612)
+-...-.- .+.-..++..++..+.+... .+..|.+.+.+
T Consensus 394 f~s~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~ 433 (970)
T KOG0946|consen 394 FRSYLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVG 433 (970)
T ss_pred HHHHHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHh
Confidence 64433210 01113344444444444322 55555554443
No 116
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.02 Score=75.03 Aligned_cols=220 Identities=18% Similarity=0.182 Sum_probs=150.2
Q ss_pred hHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhH
Q 000051 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2612)
Q Consensus 1698 lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~ll 1777 (2612)
+...+..+.++...+|-+++..+..+.+.-...=.-....++...+..++|++.+|--.|.++...+++.|+++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455666788889999999999999874433222334679999999999999999999999888888888887555555
Q ss_pred HHHhhccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhCh---hhHHHHHHHHHHH
Q 000051 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1852 (2612)
Q Consensus 1778 p~L~~~l~d~--~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~---~~~~~vl~~L~~~ 1852 (2612)
....+.-... +.+++.+ ++++.++. .+|+ .++..++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkVG--Eai~k~~q-------------------------------a~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVG--EAILKVAQ-------------------------------ALGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehHH--HHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHHh
Confidence 4433222111 2333332 44444332 2232 2444455554455
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhh-------hH
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLP-------SI 1924 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~-------~l 1924 (2612)
..|++..-|..++..++.++..+...+.+++..++..++.... |.+.-+|.+|+..+..+...+|...+| ..
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6788888999999999999987766666777777777776665 778899999999999999999977655 22
Q ss_pred HHHHhhhcC-CCChhHHHHHHHHHHHH
Q 000051 1925 IPILSRGLK-DPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1925 lp~L~~~L~-d~~~~vR~~a~~aL~~l 1950 (2612)
...+....+ +++..+|..+|.++-++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 233333333 34455677777776654
No 117
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.18 Score=66.31 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcc---hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1336 ~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~---~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
..-+..+++.|....|......|...|..++.-.... .+.-..+++.|...++++.|+.....|+.|+.+|++.+|+
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 3355677777776645556667777666555321111 2222367888999999998999999999999999999997
Q ss_pred cchhhHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1413 LFEPYVI-QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1413 ~~~~~v~-~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
...-.|. +.+|.++..+. -.-.+|-+.+.+++..+...-+.... ..-+-..+.+|+==.-..++.|+....+++...
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6554444 57888877654 45678888999999888765544422 111222333332112244666777777777654
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2612)
+..-..+.-+.+|.|..+|+..+.++-+.++-|+..+++.+.
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 444344556778999999998888999999999999998775
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.15 E-value=0.022 Score=70.76 Aligned_cols=190 Identities=17% Similarity=0.180 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHh-cChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcC--CCc
Q 000051 2231 LPIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IAL 2307 (2612)
Q Consensus 2231 lp~l~~~L~~~~~~~r~~aa~~L~~li~~-~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~--~~l 2307 (2612)
+...+..+.......|+.+...+..+... .-++.+......++..+.+.+... ..+-+..++.+++.++-.+| ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 34455666667788999998888877744 333456666677888888888754 33667788888998887765 555
Q ss_pred cCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc-CChhH------HHHHHHHh--hhc----------CCHHHH
Q 000051 2308 KPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALS-TRVDP------LVGDLLSS--LQV----------SDAGIR 2366 (2612)
Q Consensus 2308 ~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~~-~~~~~------~l~~Ll~~--l~~----------~d~~vr 2366 (2612)
..++..+.+.+.+.+.|. +..+|..++.|||.+.-+. ...+. .+..+... .+. +++.+.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 667788888898999886 5678889999999884432 22222 22211111 111 125689
Q ss_pred HHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 2367 EAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2367 ~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
.+++.++.-++...+...........++.+...+++.+.+||.+|.++|+-+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987765322355667778888899999999999999999887654
No 119
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.032 Score=73.31 Aligned_cols=224 Identities=14% Similarity=0.100 Sum_probs=158.9
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~ 2007 (2612)
....+.|+.+.+|.++...+..+++.-.+. -..+...++......+.|.|+-|--+|.+++..+++.... .++|-
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~-~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~d 806 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKA-TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPD 806 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHH
Confidence 334567888889999999999888744222 2234567888888999999999999999988888876443 44554
Q ss_pred HHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCC
Q 000051 2008 LLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDD 2087 (2612)
Q Consensus 2008 Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~ 2087 (2612)
+.+.-.+.... .. ....-....|+..++...|+-+..|...++...++..++++
T Consensus 807 L~e~Y~s~k~k-------------------------~~-~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKK-------------------------LQ-TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccC-------------------------CC-ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCch
Confidence 44321111100 00 00011234788888888899899999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhcc---cccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhcccchhccH----HHHHHHHH
Q 000051 2088 MDVQSLAKEAAETVTLVID---EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA----PNMISTLI 2159 (2612)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~~---~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~~~~~~~~~~~~----~~il~~L~ 2159 (2612)
...|..+...++.++.... .+.+.++...++...+ |+.+.+|++|+..+..+...++.++.+.. -+....+.
T Consensus 861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~ 940 (982)
T KOG4653|consen 861 HEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL 940 (982)
T ss_pred HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 8899999999998877543 3567777777766664 67899999999999999999988877743 45555555
Q ss_pred HHhc-CCChhHHHHHHHHHHHHHh
Q 000051 2160 VLLS-DSDSTTVAAAWEALSRVVA 2182 (2612)
Q Consensus 2160 ~ll~-d~d~~V~~~a~~aL~~l~~ 2182 (2612)
.... ++|..++-.+..++..+-.
T Consensus 941 ~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 941 SYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHH
Confidence 5444 5556677777777666543
No 120
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.11 Score=68.11 Aligned_cols=210 Identities=17% Similarity=0.161 Sum_probs=132.6
Q ss_pred hHhHHHHHHHhcCCC-CHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc
Q 000051 1298 VHAVVDKLLDVLNTP-SEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2612)
Q Consensus 1298 ~~~i~~~L~~~L~~~-~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~ 1371 (2612)
++.+++.|+..|++. +.+++..|++||..++...+... ...|+.+++.|..-.=.+....+..+|..+....+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 678899999999986 67999999999999887766532 246778888887654345566677777777777666
Q ss_pred chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1372 ~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
..++...++..|. ++.-= ....+..|+-....+|..++..=..|+.+.+|.+-..|...+..+-+.++-|+-.++..+
T Consensus 289 AiL~AG~l~a~Ls-ylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 289 AILQAGALSAVLS-YLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHhcccHHHHHH-HHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 6555434433322 22111 123444566666667766664334578889999999998887788888888887777654
Q ss_pred cHH--hH-----HhHHHHHHhhhcCC----ChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhc
Q 000051 1452 SAQ--GV-----KLVLPSLLKGLEDK----AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLT 1509 (2612)
Q Consensus 1452 ~~~--~v-----~~ilp~Ll~~L~~~----~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~ 1509 (2612)
..+ -+ ..++....+.+.-. +-.+..+.+..|..|+..+|......+ .+|...+...+.
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence 433 11 22222222222211 224566777788888887776554433 345555555443
No 121
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.11 E-value=0.0022 Score=71.09 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=84.2
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHH---HHhc
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 2303 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L---~~~~ 2303 (2612)
....+|+|.+|+......-+-.|..++.++++..+.+.+.|.+++++.|+.+.|+.+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 357999999999999888999999999999999666889999999999999999987 889999999999999 7788
Q ss_pred CCCccCchHHHHHHHH
Q 000051 2304 GIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~~ 2319 (2612)
|..+.||.+||.+.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 122
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.09 E-value=0.025 Score=70.34 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=133.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhh--CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC--C---
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N--- 1532 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~--~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~--- 1532 (2612)
+...++.+.++.-.+|..++..+..+... .++.+......++..+.+.++-...+-+..|+++++-++-.++ .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33444555566667777777776555532 4566677778888999999987777777788888888876654 1
Q ss_pred hhHhhHHHHHHhhcCCCChh--HH-HHHHHHHhccccccCChhhHhhHHHHHH---Hh--hc----------CCCHHHHH
Q 000051 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVH---RG--LR----------ERSAETKK 1594 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~--~r-~al~~L~~~~~~~~i~~~~l~~iip~L~---~~--l~----------d~s~~vr~ 1594 (2612)
..+..+.|.|.+.+.|.... .| .|+.+|.-..|+...+.......+..+. .. .+ ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 24578889999998887654 44 4666666656665544444432222222 11 11 12357889
Q ss_pred HHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g 1651 (2612)
.|...++-+...+.. ..+..++...+|.|..+|.+++.+||.+|.++|+-+.+...
T Consensus 205 aAL~aW~lLlt~~~~-~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPD-SKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999998876543 34667778899999999999999999999999999988654
No 123
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.07 E-value=0.003 Score=67.29 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=89.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHH-hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~-~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
+++|.+++.+.+.++.+|..+..++..+....+.. .++ .++|.+++.+.+++.+.+..++.+|+.++...+.....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36888888999999999999999999987653222 233 78999999999999999999999999999876543333
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
.. .++++.+.+.+++.+.++|..++.+|.+++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33 458999999999999999999999999876
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.07 E-value=0.00047 Score=61.79 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i 1447 (2612)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.++.++.|+++.||.+|..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998888889999999999999999999999999999888753
No 125
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.04 E-value=0.0016 Score=71.45 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=89.7
Q ss_pred HhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2478 KSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2478 ~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
+++..||+.++|.+|..++..++..+... ..+..++..+..++.| +.|+|.++..++..++..+|..+.+.++.
T Consensus 33 FKh~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~ 106 (169)
T PF08623_consen 33 FKHKVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDS 106 (169)
T ss_dssp CEEEEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTT
T ss_pred ceeeecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 35677889999999999999999987543 3578899999999999 99999999999999999999999999999
Q ss_pred HHHHHHhhhcC--CcchhhhhHH----------HHHHHH-hcccccchhh-hHhhhhh
Q 000051 2558 FGPALAECLKD--GSTPVRLAAE----------RCAVHA-FQLTRGIIYS-RSTKIYN 2601 (2612)
Q Consensus 2558 l~p~l~~~~~~--~~~~vk~aae----------~~~~~~-~~~~~~~~~~-~~~~~~~ 2601 (2612)
+++++-..+.- +...||+..| ||..++ .++.+.+..- ++.++++
T Consensus 107 l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~~~~f~~ 164 (169)
T PF08623_consen 107 LVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNKWNEFVE 164 (169)
T ss_dssp THHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-HHHHHHH
T ss_pred HHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 99999998753 4555666555 777777 6665544444 3444443
No 126
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=2.3 Score=56.27 Aligned_cols=305 Identities=16% Similarity=0.135 Sum_probs=159.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-----CCCHHHH-HHHHHHHHHHHHHhchh------hhh
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-----SSSSERR-QVAGRALGELVRKLGER------VLP 1922 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-----~~~~~~R-~~A~~aL~~lv~~~~~~------~l~ 1922 (2612)
|-...+|-.|-.+...+..+.+..+.+++-.++.....+.. +-+.-.+ -++..+.|--...+.+. ...
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~ 487 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQE 487 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34456788888888777776655443333332222222221 1111122 22233333222222111 234
Q ss_pred hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH--hChh
Q 000051 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--AGMQ 1999 (2612)
Q Consensus 1923 ~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~-d~~Vr~~A~~al~~l~~~--~g~~ 1999 (2612)
.++|.+.. -.+...-.|..++..+|+.+..--+ .+.-+.+...+...+.|. |.-||-+++.++..+.+. +..+
T Consensus 488 ~llpEl~~-~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 488 ALLPELAN-DHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred hhCHHhhh-cccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 45555541 1123345788899989887653222 223345566677788887 788999999999988775 3455
Q ss_pred hhhhhHHHHHHhc-------cCCCcchHHHHHHHHHhhhcccccccccc------hhhccCCcch--hHH---HHHHHHH
Q 000051 2000 AIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPHIL------PKLVHLPLSA--FNA---HALGALA 2061 (2612)
Q Consensus 2000 ~~~~ilp~Ll~~L-------~~~~~~~~al~~L~~il~~~~~~vlp~Li------p~L~~~~~~~--~~~---~al~~La 2061 (2612)
.+-+++|.+...+ +.-+++-..|..+..++..-+..+-|... |.+=+..... -++ .++..+.
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 5666666555433 23344456677777777655555555532 3322111110 133 3444455
Q ss_pred HHhCCChhhhHhhHHHHHHHhcCCC---CHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 000051 2062 EVAGPGLNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSAYLI 2136 (2612)
Q Consensus 2062 ~~~g~~l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L 2136 (2612)
...|..-.+..+-++|.+--...-+ +.-.-+.+.+-+...+.... .+.+-.++|.+...+.......| .++..+
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii 722 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMII 722 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHH
Confidence 5667664455555555444333222 23345666666766666543 25566677777777754333332 334444
Q ss_pred HHH-HHhcccchhccHHHHHHHHHHHhcC
Q 000051 2137 GYF-YKNSKLYLVDEAPNMISTLIVLLSD 2164 (2612)
Q Consensus 2137 ~~l-~~~~~~~~~~~~~~il~~L~~ll~d 2164 (2612)
... .-..+.-+..|...+...+...++|
T Consensus 723 ~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 723 SSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222334456677777777777755
No 127
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=4.2 Score=59.14 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=133.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~--~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
....+...+........|+-.+.+++.+... |.... .+.++..+.+.+.+. +++....++.-+++.+-+..|+...
T Consensus 52 ~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~-~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~ 129 (2067)
T KOG1822|consen 52 LEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFS-LYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIG 129 (2067)
T ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhh-HHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhc
Confidence 4456666677777788999999999999987 54332 234555566666554 4677777888899999998887666
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---H--HhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~---~--~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p 1490 (2612)
.-+...+..+.+..+-.+..+|......+......+. . ...+.+.-.....+.+....+|.++..++..+....+
T Consensus 130 ~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~ 209 (2067)
T KOG1822|consen 130 RGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGG 209 (2067)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcC
Confidence 5566777777777776777777776666555444333 1 1235666666666777777799999999888876543
Q ss_pred hhh-hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 000051 1491 QQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1491 ~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 210 ~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 210 PGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred ccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 333 4445556666677788889999999999999887654
No 128
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.99 E-value=0.024 Score=64.86 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCC
Q 000051 2326 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 2404 (2612)
Q Consensus 2326 ~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~ 2404 (2612)
++.+|..+..++|.|. .+..-++++++.+...+.++++.+|..++..|..++...-. .....++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHHcCCC
Confidence 5789999999999994 45566899999999999999999999999999999875322 234555444556778999
Q ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh
Q 000051 2405 DHVRVSAASILGIMSQCMEDGQLADLLQELLNL 2437 (2612)
Q Consensus 2405 ~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~ 2437 (2612)
+.+|..|..++..+.....+..+...+++++..
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~ 109 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISS 109 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999999998874444566667765543
No 129
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.96 E-value=2.4 Score=55.31 Aligned_cols=425 Identities=15% Similarity=0.116 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH------hHHhHHHHHH
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLL 1464 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~------~v~~ilp~Ll 1464 (2612)
.+...+...+++.++.+-.+.+...+. ..++.++..+.+++ ..+++++..+++.+...-+.. ..+.+++.+.
T Consensus 67 ~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s 146 (678)
T KOG1293|consen 67 TELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFS 146 (678)
T ss_pred hhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 344446666778887776666666655 57899999999988 899999999999998743211 2355555544
Q ss_pred hhhc-CCChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hH-hhHHH
Q 000051 1465 KGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI-ASLVP 1540 (2612)
Q Consensus 1465 ~~L~-~~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i-~~ivp 1540 (2612)
..+. +.+...+..+ .+...+...+. +..-+-..+...+.-++..-+..+|.+|..++..-...+.|+ .. ...+.
T Consensus 147 ~l~s~~lk~~~~l~~--~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 147 LLYSIELKYISRLDV--SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred HHHhhhhhhhhhhhh--hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 4333 1111111100 00111111111 222222233333333344447889999999888533333332 21 11111
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc-------c
Q 000051 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD-------M 1613 (2612)
Q Consensus 1541 ~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~-------l 1613 (2612)
. +.|..-..| -.+.+...++....|-.++.++..++..- ..++ +
T Consensus 225 ~----L~d~~v~~r------------------------~~v~rL~k~~~~s~~l~sl~cl~~~~~~s-~~~d~l~~~~~~ 275 (678)
T KOG1293|consen 225 L----LKDKGVNIR------------------------CVVTRLLKDPDFSERLRSLECLVPYLRKS-FNYDPLPWWFIF 275 (678)
T ss_pred H----Hhccccchh------------------------hhhhhhhhCCCccHHHHHHHHHHHHHhcc-ccccccccceee
Confidence 1 111110000 01233444555555666666666666531 1111 1
Q ss_pred hhhHhhh--HHHHHHHhcCCCHHHHHHHHHHHHH---HHhhhCCC-C---chhhHHHHHHH---hccCCCHHHHHHHHH-
Q 000051 1614 IPYIGLL--LPEVKKVLVDPIPEVRSVAARAIGS---LIRGMGEE-N---FPDLVSWLLDA---LKSDNSNVERSGAAQ- 1680 (2612)
Q Consensus 1614 ~~~l~~l--l~~L~~~L~d~~~~VR~~A~~aL~~---L~~~~g~~-~---~~~ll~~L~~~---L~~~~~~~~R~~aa~- 1680 (2612)
.+..+.. .-.....+.+|.+..-..+...... ++...... + .....+.++.. ++... ..-|.-++.
T Consensus 276 ~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~~~i~l~e 354 (678)
T KOG1293|consen 276 FDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKYRLILLNE 354 (678)
T ss_pred ccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhhhHHHhhh
Confidence 1111111 1112223334432222222222222 22222111 1 11222322222 11111 112221111
Q ss_pred H--HHHHHHHhChhhHHhH-----hHHHHHhccCCChhhHhHHHHHHHHhhhhh---ccchhhhHHhHHHHHHhhcCCCC
Q 000051 1681 G--LSEVLAALGTVYFEHI-----LPDIIRNCSHQRASVRDGYLTLFKYLPRSL---GVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1681 ~--L~~i~~~~g~~~l~~l-----lp~l~~~~~~~~~~vR~~~~~~l~~L~~~~---g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
. ........|...-+++ +..++......+...+.+++.++..+.+.. ... +--.+++.++++.+.|++
T Consensus 355 ~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 355 TLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPE 432 (678)
T ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcc
Confidence 1 1111111221111111 112222222346777888888877776543 232 223568888889999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhch---h-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch
Q 000051 1751 ESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~---i-~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~ 1826 (2612)
..|..+++.++..++-.|++-. + .-.+..+.....+.+..+|..++..+..+.|.+ |+.
T Consensus 433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~--- 495 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE--- 495 (678)
T ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH---
Confidence 9999999999999987776531 1 125666778888999999999999999987642 110
Q ss_pred HHHHHHHHHHhChhhHHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1827 EAHGRAIIEVLGRDKRNEVLA-ALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1827 ~~~~~~l~~~Lg~~~~~~vl~-~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
..... ..++-. .+....+|+++.|.+.+.+++..+.-+..+.
T Consensus 496 --~k~~~--------~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 496 --EKFQL--------LAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHHHH--------HHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 00011 111222 2223458999999999999999998765543
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.90 E-value=0.0031 Score=63.01 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=69.5
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1422 lp~ll~~l-~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
+|.++..+ +|+++.||..+..+++.+ +-...+|.+.+.+.+++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46788888 899999999988888743 235778899999999999999999999998742 557
Q ss_pred HHHHhhhhcCC-CHHHHHHHHHHHH
Q 000051 1501 VPKLTEVLTDT-HPKVQSAGQTALQ 1524 (2612)
Q Consensus 1501 vp~L~~~L~D~-~~~VR~aA~~aL~ 1524 (2612)
++.+.+.+.|+ +..||..|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 78888888664 5677999999885
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.036 Score=63.78 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=123.2
Q ss_pred chhHHHHhhhhcC--CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhc-----------
Q 000051 1498 PKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQT----------- 1563 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D--~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~----------- 1563 (2612)
..-+|.+...+.| ..|.||-.|..||++++. ...++.+.+..+||...+++ |.-++...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccc
Confidence 3446667777765 478899999999999983 23455666666788877775 32222221
Q ss_pred --cccccCCh--hhHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHH
Q 000051 1564 --TFVNTVDA--PSLALLVPIVHRGLRERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2612)
Q Consensus 1564 --~~~~~i~~--~~l~~iip~L~~~l~d~s--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~ 1637 (2612)
.+.. +++ |....-++.+...+.|.+ .-.|..+.-.+.++.. +.-+..+.+.+.+++.-.|.
T Consensus 139 ~~p~~S-vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 139 SSPYIS-VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred cCcccc-CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHH
Confidence 1111 111 101111333333333321 1233334333433321 23566777788888999999
Q ss_pred HHHHHHHHHHhhhCCCCchhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHH
Q 000051 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1638 ~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
.++-+||.+-. +.-+|.|.+.|.+. +...+|..++.+|+.+.. ++.++.+.+.++++.+-+|++|
T Consensus 206 EvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 206 EVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred HHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHH
Confidence 99999998754 34456666666543 345699999999887754 3455567777889999999999
Q ss_pred HHHHHHhhhhhccchh
Q 000051 1717 LTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~ 1732 (2612)
..+|..+--.-++.|.
T Consensus 272 ~valdm~eyens~~~e 287 (289)
T KOG0567|consen 272 EVALDMLEYENSKEFE 287 (289)
T ss_pred HHHHHHHHHhcccccc
Confidence 9888776655555543
No 132
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=3.9 Score=55.82 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=71.1
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH---hcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---
Q 000051 1846 LAALYMVRSDVSLSVRQAALHVWKTIV---ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--- 1919 (2612)
Q Consensus 1846 l~~L~~~~~D~~~~VR~aA~~~l~~l~---~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~--- 1919 (2612)
+..-...+++.+..+|-.|++++..-. ...+..+-+.+...+|.++.++...++-.-..|..|+..++...|+.
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333334578999999999999987533 34567788888999999999999999999999999999999998875
Q ss_pred -hhhhHHHHHhhhcCC
Q 000051 1920 -VLPSIIPILSRGLKD 1934 (2612)
Q Consensus 1920 -~l~~llp~L~~~L~d 1934 (2612)
++..++|.+...+.+
T Consensus 885 R~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 885 RFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567788887765443
No 133
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.12 Score=59.69 Aligned_cols=237 Identities=17% Similarity=0.174 Sum_probs=134.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhHhH
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2612)
..+.+...+.+...+...+-+|+++.. ..-+|.+...+.| ..|-+|..+..+||.+. .+.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~-----------~~~ 100 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-----------DPE 100 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-----------chh
Confidence 334444444443444444555554432 3455666665554 45778999998888763 144
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcc--hHHHHHHHHHhhhcccccccccchh
Q 000051 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPK 2043 (2612)
Q Consensus 1966 ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~al~~L~~il~~~~~~vlp~Lip~ 2043 (2612)
+++.+.+...|+-..|++....|+.++-...+........|+.- .++... ...+..++..+-
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S---vdPa~p~~~ssv~~lr~~ll------------- 164 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS---VDPAPPANLSSVHELRAELL------------- 164 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc---CCCCCccccccHHHHHHHHH-------------
Confidence 56667777788888888887777776643221111111111100 011000 011112222110
Q ss_pred hccCCcch-hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcC
Q 000051 2044 LVHLPLSA-FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVG 2122 (2612)
Q Consensus 2044 L~~~~~~~-~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~ 2122 (2612)
+..... .+-+++=+|-.. | -..-+..+.+.+.+++.-.|..+..+++++-. +.-++.|.+.+.
T Consensus 165 --d~t~~l~~Ry~amF~LRn~-g------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 165 --DETKPLFERYRAMFYLRNI-G------TEEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLL 228 (289)
T ss_pred --hcchhHHHHHhhhhHhhcc-C------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHH
Confidence 000000 011121111111 1 13456778888888888889888888888754 233444445543
Q ss_pred --CCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000051 2123 --DNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2612)
Q Consensus 2123 --~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2612)
.+++.+|..|+.+||.++. ++.+..|...+.|+++-|++.+.-+|.-.-...
T Consensus 229 d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 3679999999999999975 477888889999999999999888887654433
No 134
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.81 E-value=0.33 Score=63.67 Aligned_cols=292 Identities=13% Similarity=0.105 Sum_probs=164.2
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
.|+...+..|+..|..+.+..+ ......+..++.+..|. +..||..|+..|..++..-+ .|++.+..++.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP-----~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFP-----DLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-G-----GGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHH
Confidence 3678889999999998887664 22234455567777775 88899999999999887533 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHhcCCCc-C--hHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSV-S--SAVKIRVY 2393 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~---~~d~~vr~~~l~AL~~vi~~~g~~~-~--~~~~~~i~ 2393 (2612)
+.|+..+......+-.+|-.+...+| ...+..+...+. ..|..+|+.++..|.+-+...+... . .+.-.-|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 99998888888999999998876554 345666666665 5678899999999988877766544 2 45667778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh---hCChhHHHHHHHHHHhhc------CCCCchhhHHHHHHHHHHHhhCCccc
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAI 2464 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~~~~~~~~l~~~l~~~p~~~ 2464 (2612)
+.+.+.+.|-...--.....+|+.+-. ..+......+++-+.... ...+.......+.++...+......+
T Consensus 181 ~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v 260 (556)
T PF05918_consen 181 DEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV 260 (556)
T ss_dssp HHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC
Confidence 888888888655555666677777765 234333344443332211 12222222234445555544322222
Q ss_pred cCCchhHHHHHHHHhh----hccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCC--CH----HHHH
Q 000051 2465 SMSPLFLSILDRLKSS----LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD--SS----EVRR 2534 (2612)
Q Consensus 2465 ~~~~~~~~i~~~l~~~----~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~--~~----~vr~ 2534 (2612)
.. .+++.++++. +.+=....+-.-+..+..+..+++..+ ....+..+...+..-+... .+ ..-.
T Consensus 261 ~S----skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vE 334 (556)
T PF05918_consen 261 SS----SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVE 334 (556)
T ss_dssp ------HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHH
T ss_pred Ch----HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhh
Confidence 22 2344444443 332233455566677777766665322 1122333334443322221 22 2235
Q ss_pred HHHHHHHHHHhhCch
Q 000051 2535 RALSALKSVAKANPS 2549 (2612)
Q Consensus 2535 ~a~~~l~~~a~~~~~ 2549 (2612)
..+.++..+++..|+
T Consensus 335 cLL~afh~La~k~p~ 349 (556)
T PF05918_consen 335 CLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHHTT-TH
T ss_pred HHHHHHHHHhhhCcc
Confidence 677788899998886
No 135
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.62 Score=54.78 Aligned_cols=211 Identities=18% Similarity=0.195 Sum_probs=116.6
Q ss_pred HHHHHHHHHHH-hhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHH
Q 000051 1757 ALGAGHVLVEH-YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2612)
Q Consensus 1757 Al~al~~lv~~-~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~ 1835 (2612)
+..++..+.+. ++....+.++|.+..|+..++..++.-++..+|-++..+ |.... ..+.-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdc--------------DtnaV-----seill 123 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDC--------------DTNAV-----SEILL 123 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC--------------chhhH-----HHHHH
Confidence 56667666653 455567789999999998888888888888888876321 11111 11111
Q ss_pred HhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHH-HH--HHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM-NT--LISSLASSSSERRQVAGRALGEL 1912 (2612)
Q Consensus 1836 ~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll-~~--L~~~L~~~~~~~R~~A~~aL~~l 1912 (2612)
+.. +++++.+..+....+.+|..+|++.++.++. +|..+.-+++.=+ .. +.+.....+.-.|.-....+-++
T Consensus 124 vvN----aeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIiei 198 (524)
T KOG4413|consen 124 VVN----AEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEI 198 (524)
T ss_pred Hhh----hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHH
Confidence 111 3466667777778888999999999999875 5655555544311 10 01111122333344333333333
Q ss_pred HHHhchh----hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhc--CCcHHHHHHH
Q 000051 1913 VRKLGER----VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESA 1985 (2612)
Q Consensus 1913 v~~~~~~----~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~--D~d~~Vr~~A 1985 (2612)
....+.. -.+-++..|..-++. +|.-|+.+++....+++....+..+.+. ..++..+...+. |.+|--+-.+
T Consensus 199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence 3222111 134566666666664 6777788877777777655443332211 345555555443 4444433334
Q ss_pred HHHHHHH
Q 000051 1986 GLAFSTL 1992 (2612)
Q Consensus 1986 ~~al~~l 1992 (2612)
.-.++++
T Consensus 278 lmgfgkf 284 (524)
T KOG4413|consen 278 LMGFGKF 284 (524)
T ss_pred HHHHHHH
Confidence 4444443
No 136
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.74 E-value=0.21 Score=62.53 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCccC--chHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhccC-ChhHHHHHHHHhhhcCCHHHHHHH
Q 000051 2294 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALST-RVDPLVGDLLSSLQVSDAGIREAI 2369 (2612)
Q Consensus 2294 ~~L~~L~~~~~~~l~p--~lpqL~~~~~-k~L~d~~~~vR~~Aa~aLg~L~~~~~-~~~~~l~~Ll~~l~~~d~~vr~~~ 2369 (2612)
.....++......+.+ .+..+.+.++ .+++.++..+|..|.+|||...-+.. ....+++.+...++..+..+|..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555555444454 3346665554 78999999999999999999866544 455778888888866688999999
Q ss_pred HHHHHHHHHhcCCCcChH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2370 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2370 l~AL~~vi~~~g~~~~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
++++..++...|...-.. ....+...+.+.+.+.++.++..+++.+++|..
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 999999998888654322 346788889899988899999999999999754
No 137
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.70 E-value=0.008 Score=60.00 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000051 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2612)
Q Consensus 1578 ip~L~~~l-~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~ 1656 (2612)
+|.|.+.+ +++++.+|..++.+++.+.. +..++.+...+.|+++.||..|+.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 45677777 78899999999999884322 3578889999999999999999999998742 5
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHH
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~ 1683 (2612)
+.++.|.+.+.++....+|..++++||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 677888888888777767888877764
No 138
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.62 E-value=0.076 Score=63.72 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-h
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-G 1455 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~ 1455 (2612)
-++.+..+++..+|+..++.++.+++..+. .+ .-...+. ..++.+...+.++++.+|..|..++..+....... .
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-Ch-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 345667777776689999999998888653 22 1223333 47889999999999999999999998775554333 4
Q ss_pred HHhHHHHHHhhhcCCCh--hhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1456 VKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w--~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
++..++.+.+...+..| ..+.+++.+|..|.-... ....+...+|.++.++...+..+|..+.++|..++.
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 57788888887665544 667788999988864321 122234456777788888889999999999988876
No 139
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.07 Score=66.45 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=142.1
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhc
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~ 1378 (2612)
.++.+.+-+.+.+.+.-.-.+++-.++-++ .+.-..+.++.++..-.+.......|+.+.+++.+.-+. .. .
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~m--Lgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe----~ 516 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLM--LGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QE----M 516 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceee--ecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HH----H
Confidence 456667777776665544444444443322 233345667776665443333456677777777666432 11 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~-l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
.-+.+.+++.++ ++-.|.++++.++...-+-|+ . .++..++.. ..|.+.+||++|..+++.+.-.- .
T Consensus 517 add~I~ell~d~-ds~lRy~G~fs~alAy~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 ADDYINELLYDK-DSILRYNGVFSLALAYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred HHHHHHHHhcCc-hHHhhhccHHHHHHHHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----c
Confidence 223556666666 799999998877765544443 2 233444443 78999999999999987763211 3
Q ss_pred hHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC---Ch
Q 000051 1458 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 1533 (2612)
Q Consensus 1458 ~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~ 1533 (2612)
..++..++.|. +.+..+|.+..-+||-.+.+...+. .+..|-.++.|++.-||..|+-+++-+..... ||
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 34566666665 4578999999999987766544432 23344557789999999999999988775543 35
Q ss_pred hHhhHHHHHHhhcCCCC
Q 000051 1534 EIASLVPTLLMGLTDPN 1550 (2612)
Q Consensus 1534 ~i~~ivp~Ll~~l~d~~ 1550 (2612)
.+..|...+.+.+.|..
T Consensus 659 ~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 659 NVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 56677777776665543
No 140
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.53 E-value=0.011 Score=62.93 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---hh-hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHH
Q 000051 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGE---RV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2612)
Q Consensus 1886 ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~---~~-l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~ 1961 (2612)
+++.+++.+.+.++..|..++.+++.++....+ .+ ...++|.+...+.++++.++..++.+|+.+..... .....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 456677778888899999999999999865322 22 34788888888999999999999999999865432 22222
Q ss_pred hH-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1962 FM-DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1962 ~l-~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
+. ..+++.+.+.+.+.+.++++.++.++..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 458999999999999999999999888764
No 141
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=9.8 Score=55.30 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=112.7
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+-.++|.|...|.+++-.+|..|+.++|.|...-..++...++.++...+.-+.|.+..||-+++++..++.-. +
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~ 331 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN--N 331 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--C
Confidence 33456678888888888888899999999999887666667777899999999999999999999999998877543 5
Q ss_pred hhHhh---HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-c-
Q 000051 1533 PEIAS---LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V- 1607 (2612)
Q Consensus 1533 ~~i~~---ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~-~- 1607 (2612)
|.+.. +.-.+.....|++..+|. ..++...-+....-...+.++..+...+.|..|.||..|..-+..+.+. .
T Consensus 332 ~~~~~~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 332 PSIAKASTILLALRERDLDEDVRVRT--QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred chhhhHHHHHHHHHhhcCChhhhhee--eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54422 222333344455544431 0000000000001111122556666778899999999999988877763 1
Q ss_pred ---CCCCcchhhHhhhHHHHHHHhcCCCHHHH
Q 000051 1608 ---TEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636 (2612)
Q Consensus 1608 ---~~~~~l~~~l~~ll~~L~~~L~d~~~~VR 1636 (2612)
...+...+-.+.+-..+..++-..+.+.|
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHH
Confidence 11233444444444455555554444555
No 142
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.033 Score=65.50 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=123.4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH--
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-- 1535 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-- 1535 (2612)
..+...+..|++++|..+..++..+..++.-.++.+...|..++..+++-+++....|-.+||.+++.+...+.+.-.
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677889999999999999998887777888888899999999999999999999999999999988765422
Q ss_pred -hhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1536 -ASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1536 -~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
+..+-.|+..-.+.+..+|+ +-++|.. .+.. ..-..+++.|..++...++.+|..++.+..+....++-+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~---vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVA--MVNH---VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHH--HHhc---cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 33333333333344445553 3333332 1222 223456777777788888999999988776655544433334
Q ss_pred hhhHhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~a 1642 (2612)
.+|...+.+.+.+-+.|.-|.+|+.|-..
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHH
Confidence 45566677777777777777766555433
No 143
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.27 Score=63.59 Aligned_cols=205 Identities=19% Similarity=0.139 Sum_probs=127.8
Q ss_pred CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC
Q 000051 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370 (2612)
Q Consensus 1295 ~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg 1370 (2612)
+.-+..++..++.+...+.-.||..+...+..++....+-. ..+...++..+.+- +..+|..|..+|..+-...+
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCC
Confidence 34567778888888888999999999888887776444322 33444555555543 46899999999988764333
Q ss_pred cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHHH
Q 000051 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA-ECAARAMMS 1449 (2612)
Q Consensus 1371 ~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa-~~al~~i~~ 1449 (2612)
... .++.+.+...++++.++.+|.+|+..+..=. .-+|.++....|-+..+|+.+ ..++..+
T Consensus 159 dee---~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn------------sTlp~IveRarDV~~anRrlvY~r~lpki-- 221 (892)
T KOG2025|consen 159 DEE---CPVVNLLKDLIQNDPSDEVRRAALSNISVDN------------STLPCIVERARDVSGANRRLVYERCLPKI-- 221 (892)
T ss_pred CCc---ccHHHHHHHHHhcCCcHHHHHHHHHhhccCc------------ccchhHHHHhhhhhHHHHHHHHHHhhhhh--
Confidence 333 3688889999988889999999877443311 346777888888888888876 3333333
Q ss_pred hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHH-HHHhhCchhhhhhhchhHHHHhhhhcCCC-HHHHHHHHHHHHH
Q 000051 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG-AMAYCAPQQLSQCLPKIVPKLTEVLTDTH-PKVQSAGQTALQQ 1525 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~-~ia~~~p~~l~~~L~~ivp~L~~~L~D~~-~~VR~aA~~aL~~ 1525 (2612)
++....++.-+-.+-.+|.+.+..+|.++...+. .+..... .=++.+++-++=++ .+|+..+.+|+-.
T Consensus 222 d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 222 DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222233333333445677777777776666552 2332211 11222344444333 3677666666654
No 144
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=6.2 Score=51.94 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=134.1
Q ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCch
Q 000051 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ---LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2612)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~---l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~ 1491 (2612)
...+..++-+++.+...++..||...+..+..++.. .++.-+..+...+...+.+....+|..|+.+|..+-.. |.
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~ 158 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PK 158 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CC
Confidence 346778888999999999999999999999999873 44445688888888999999999999999998876532 11
Q ss_pred hhhhhhchhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHH-HHHHhccccccC
Q 000051 1492 QLSQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTV 1569 (2612)
Q Consensus 1492 ~l~~~L~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al-~~L~~~~~~~~i 1569 (2612)
.- =-.++..+..++ +|++++||.+|..++..=. ...|.++....|-+...|.++ ..+.. +. ..
T Consensus 159 de---e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdn---------sTlp~IveRarDV~~anRrlvY~r~lp-ki--d~ 223 (892)
T KOG2025|consen 159 DE---ECPVVNLLKDLIQNDPSDEVRRAALSNISVDN---------STLPCIVERARDVSGANRRLVYERCLP-KI--DL 223 (892)
T ss_pred CC---cccHHHHHHHHHhcCCcHHHHHHHHHhhccCc---------ccchhHHHHhhhhhHHHHHHHHHHhhh-hh--hh
Confidence 10 012333333333 7999999999987664221 234455555555555555322 11111 00 01
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH-HH
Q 000051 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LI 1647 (2612)
Q Consensus 1570 ~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~-l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~-L~ 1647 (2612)
..-+...-+-.+..|+.|++..+|.++.+.+.. -... .+ ..++..|..+=.+.+.+|+-.+.+++=. +.
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~-~d--------gni~ElL~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF-SD--------GNILELLERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh-cc--------ccHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 112334556677889999999999988887643 1111 01 1245555554445666888888888766 33
Q ss_pred hhhC
Q 000051 1648 RGMG 1651 (2612)
Q Consensus 1648 ~~~g 1651 (2612)
...|
T Consensus 295 e~v~ 298 (892)
T KOG2025|consen 295 EDVG 298 (892)
T ss_pred HHhh
Confidence 4444
No 145
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.31 E-value=0.19 Score=63.93 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhcc-----------
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLGR----------- 1412 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~-----~~~~~~~R~~Al~al~~L~~~~~~----------- 1412 (2612)
++....|++|...+..+++..+..... .++..+...++ ...||+.+.+|+..+++++.....
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 343466777888888888876654442 23445555543 345899999999999999964321
Q ss_pred -cchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHH
Q 000051 1413 -LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2612)
Q Consensus 1413 -~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~ 1481 (2612)
.+..++ .+++|-+. .-.+..|-+|..|...+...-..+++.....++|.++..|.+++.-++.-|+.+
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 123333 35666655 334667889999999888888899999899999999999998887666555443
No 146
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.19 E-value=0.53 Score=57.11 Aligned_cols=241 Identities=17% Similarity=0.135 Sum_probs=143.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcccc-hhc-cHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2116 ELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LVD-EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2116 ~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~-~~~-~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
.|-..+.++++.+|..|..+|+.+....+.+ +.. .+.-++.-...-++ |......+..++.++.+... .-+...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~--~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKN--FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcC--CChhhH
Confidence 3445667778888888888888877766543 222 23333334444443 34444555777777773311 111111
Q ss_pred HHHHHH-HHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhh
Q 000051 2194 KVIRDA-ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 2272 (2612)
Q Consensus 2194 ~~l~~~-l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i 2272 (2612)
..+.+. .+... + .+-....|......+..+.++.. ..++..-..+
T Consensus 79 ~~i~~~l~~~~~-------------~--------------------q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~f 124 (262)
T PF14500_consen 79 VKILRSLFQNVD-------------V--------------------QSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDF 124 (262)
T ss_pred HHHHHHHHHhCC-------------h--------------------hhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHH
Confidence 111111 11110 0 01123456666666666666543 3343333344
Q ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH----hc----CCC----HHHHHHHHHHHHHH
Q 000051 2273 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC----LQ----DST----RTVRSSAALALGKL 2340 (2612)
Q Consensus 2273 ~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~----L~----d~~----~~vR~~Aa~aLg~L 2340 (2612)
+..++..+...-++.--..++..+..++...+. .++..++..++.-. +. |+. ++++.+-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 444566665544777777788888888877763 67788887766543 22 221 344444444433
Q ss_pred HhccCChh-HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh
Q 000051 2341 SALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2341 ~~~~~~~~-~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l 2400 (2612)
.++.+. ..+|.|++.+.++...+|..+++.|..++...|.....++...||+.|...+
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 345554 4589999999988888999999999999999987655789999999887543
No 147
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=14 Score=53.75 Aligned_cols=179 Identities=14% Similarity=0.157 Sum_probs=115.0
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 2186 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~ 2186 (2612)
.+-+..++|.|...+..++..+|..|...+|.++......++.-+++++...+.-+.|.+.+||-.+.+.....+-+.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 34567889999999999999999999999999998776666677899999999999999999999988887777665432
Q ss_pred cccccHHHHHHHHHHhhhhhhhhhhcCCc---ccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----
Q 000051 2187 EVQPSYIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV---- 2259 (2612)
Q Consensus 2187 ~~l~~lv~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~---- 2259 (2612)
- .......+.-..... |...+.+.+.. ..+..|.+ ..+..++....+.+.+..+.+|.+|+..+..+-++
T Consensus 334 ~-~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~ 410 (1266)
T KOG1525|consen 334 I-AKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCL 410 (1266)
T ss_pred h-hhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1 111111111111111 11111111111 11222221 12222666667788888999999999999999874
Q ss_pred --cChhhhhhchhhhhHHHHHHhcCCCCHhHH
Q 000051 2260 --TSEQSLKEFVIPITGPLIRIIGDRFPWQVK 2289 (2612)
Q Consensus 2260 --~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk 2289 (2612)
.|...+.+-+..|.+-|++++... +-+.|
T Consensus 411 ~~~~~k~~t~~~swIp~kLL~~~y~~-~~~~r 441 (1266)
T KOG1525|consen 411 RSAGGKEITPPFSWIPDKLLHLYYEN-DLDDR 441 (1266)
T ss_pred hccCcccccccccccchhHHhhHhhc-cccHH
Confidence 122334455566666677776543 23344
No 148
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.05 E-value=0.55 Score=56.95 Aligned_cols=200 Identities=15% Similarity=0.182 Sum_probs=129.7
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000051 1742 ILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816 (2612)
Q Consensus 1742 ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~ 1816 (2612)
+-.+|.++++.+|..|+..+..++..++.+ .+..++.-+.+.+. +|..-..++..+..++. ....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~-~~~~------- 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVK-MKNF------- 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHh-CcCC-------
Confidence 335677889999999999999999887644 44556666666663 44444444666655542 1110
Q ss_pred CCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh
Q 000051 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1894 (2612)
Q Consensus 1817 ~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~--~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L 1894 (2612)
+.+....++..++.. ...-...+|....+++..+..+....+...-+.++..+++.+
T Consensus 74 ---------------------~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 74 ---------------------SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred ---------------------ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 001111233333321 122345678888888888887766666555556666666655
Q ss_pred c-CCCHHHHHHHHHHHHHHHHHh----------------------------------------------chhhhhhHHHH
Q 000051 1895 A-SSSSERRQVAGRALGELVRKL----------------------------------------------GERVLPSIIPI 1927 (2612)
Q Consensus 1895 ~-~~~~~~R~~A~~aL~~lv~~~----------------------------------------------~~~~l~~llp~ 1927 (2612)
. ++++..=..+...+..+.... .+.+.+..+|.
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 5 455655444444444443221 01134688899
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
+.+.|.+..+.+|..++..|...+...+...+.+|+..+...++.
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888865
No 149
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.03 E-value=2.2 Score=55.68 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchH-HHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTF 2318 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lp-qL~~~~ 2318 (2612)
..+..++.+|+.|+-.+......-.-.+--..+..||++++.++ +..++..++.+++.++-..+..=..|+. ..+.++
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 35677888888887776554321111123356788999999886 6779999999999998766542222332 357788
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCChh------HH-HHHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2319 IKCLQDSTRTVRSSAALALGKLSALSTRVD------PL-VGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2319 ~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~------~~-l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
.+.+.+++..+|..+.++|-+++-...... .+ -..++..+.++|++|++.+++-|+.+.-.
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 889999999999999999999964332111 11 23345556788999999999999988653
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.89 E-value=2.3 Score=56.17 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
...+.-+++-|......+.. .-++.+..++..|.+.+..+|..++..|..+|..-+ .|+.++...+.+.|.-++.
T Consensus 36 ~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccH
Confidence 45666777777777665532 335667788899999999999888888777776644 3788899999999988777
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
.....+-.++..++..-+...+..++..+... ...+..+|..++..+..-+..+..... . ..++
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~-----------~-p~~E--- 174 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL-----------T-PQKE--- 174 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---------------HH---
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh-----------h-chHH---
Confidence 77777777877777665555455555555421 123456888888877765544321100 0 0001
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc--C----CCHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--S----SSSERRQVA 1905 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~--~----~~~~~R~~A 1905 (2612)
...-++..+...+.|....--...+.+|+.+-......-.+-...+++.+..... . .+.+.=.-.
T Consensus 175 ---------~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrl 245 (556)
T PF05918_consen 175 ---------MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRL 245 (556)
T ss_dssp ---------HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHH
Confidence 1111223333445665555555555555544331100001122334444443331 1 111111111
Q ss_pred HHHHHHHHHHh-----chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh
Q 000051 1906 GRALGELVRKL-----GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1906 ~~aL~~lv~~~-----~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
..|+..-...+ +..++..+...+...+.+=..+.|...+..++++...++.......++.++..+...+
T Consensus 246 i~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 246 ISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 11221111111 1113333333333334443556788888999998777765555555555555555444
No 151
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.86 E-value=3.8 Score=55.12 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHH
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~ 1688 (2612)
+.+...++..++.+..-+.+++..||...++.+..+-..+... ...-=+..|++..++.+ +..+|.-+..-+..-+..
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4577778888888888899999999999999999998888753 22212445566666555 444554444333333334
Q ss_pred hChhhHHhHhHHHHHhccC
Q 000051 1689 LGTVYFEHILPDIIRNCSH 1707 (2612)
Q Consensus 1689 ~g~~~l~~llp~l~~~~~~ 1707 (2612)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 4444446788888888764
No 152
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.82 E-value=0.27 Score=59.08 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh-CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l-g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~--~~ 1413 (2612)
+-++.++..|...+|...+..+..+++..+... ....+...+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 455777777777777777777777777755322 122333446777888888887 79999999999988875433 23
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc-HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~-~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~ 1492 (2612)
++.|+.+++..+... .-+..++.++..++..+.-.-. .+-+...+|.++..|.+++-.+|..++.+|..++... ..
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np-~~ 167 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP-DM 167 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH-HH
Confidence 556666666655443 2355777777777776632111 1234667888888888888899999999999888652 22
Q ss_pred hhhhh-chhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCCh
Q 000051 1493 LSQCL-PKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1493 l~~~L-~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
....+ .+..+.++.+++.. +.++-..+..-+.++.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 24455666667654 5677777888888887776643
No 153
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.81 E-value=0.013 Score=45.36 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
++|.+.++++|++++||.+|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999875
No 154
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.61 E-value=11 Score=48.57 Aligned_cols=175 Identities=21% Similarity=0.179 Sum_probs=113.4
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
..+.++..+.+++..++..+|..+++++..+...++..++ .....++..+.+.+-|..+.||..|..+|..+-+--+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3455667788899999999999999999988887654222 23345666677777799999999999999988764443
Q ss_pred CCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhH-HHHHHHHhhhhhccch
Q 000051 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG-YLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1653 ~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~-~~~~l~~L~~~~g~~f 1731 (2612)
+ -..+...+...++++.+..+|+.+...+. .-+...|.++..+.+.+...|.. +-.++-.+....-.+.
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~---------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNIS---------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHee---------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 2 23444566677788888888876654321 11345567777777765554432 2334433332222222
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~ 1763 (2612)
.+. +. .+-.++.|.+.+|+.++.+++..
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 222 22 45567888888999888777643
No 155
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.61 E-value=0.13 Score=67.25 Aligned_cols=188 Identities=15% Similarity=0.224 Sum_probs=137.8
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+...++|.+.+.+...+..+|....+-+..+...++. ..+.+++.|.+...+.|.++.+|+.+.+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 5567899999999999999999999988888776654 235567899999999999999999999999999999998
Q ss_pred CCc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhH-HHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1653 ~~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp-~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
..+ .+++..+.. ++.|+....|.....|++.+...+....-..++. .....+.++-..-|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHHHh-hCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 744 456665544 4445555577777777777765544333233322 233345666677788877777776665543
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~ 1767 (2612)
...-.+++|.+....-|++..||..|..+.+.+...
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 234456888888888899999999999888776543
No 156
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.47 E-value=0.69 Score=57.94 Aligned_cols=114 Identities=20% Similarity=0.136 Sum_probs=82.5
Q ss_pred HHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCch
Q 000051 2391 RVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPL 2469 (2612)
Q Consensus 2391 ~i~-~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~ 2469 (2612)
.++ +++...+.+.+..+|+.+.+|||-.+.... +-..+.+.-+.......+...+..+..++..++...+...+....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 444 556678888999999999999999987665 344444544444333446566777777777777665544443222
Q ss_pred -------hHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhc
Q 000051 2470 -------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQ 2505 (2612)
Q Consensus 2470 -------~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~ 2505 (2612)
...+...+.+.+.++++.++..++.++.+++..+.-
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 356888899999999999999999999999988653
No 157
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.46 E-value=0.37 Score=61.44 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhch-----h---------
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-----R--------- 1919 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~-----~--------- 1919 (2612)
...-|.+|.+.+..++...++...+.+...+..++.... +.+|..+..|...++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356899999999999988776666655555555444222 45788889999999888755411 0
Q ss_pred --hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000051 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2612)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al 1989 (2612)
+...++|.|. .-.+..|-.|..+|..+...-...+ .+.+..++|.+...|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1345556555 2224567788888887776533332 356788999999999999999999888764
No 158
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.40 E-value=10 Score=51.04 Aligned_cols=422 Identities=19% Similarity=0.257 Sum_probs=201.8
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCC--hhHH-HHHHHHHhccc
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTF 1565 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~--~~~r-~al~~L~~~~~ 1565 (2612)
.+++...+...+|.++.-+..+|..||....+.+..+-+.++. +.++==+..|++...+|+ ..+| .++--+ + .-
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi-~-~g 91 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYI-E-MG 91 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHH-H-Hh
Confidence 4567777888888888888899999999999999999888765 666555667777777776 3344 222111 1 11
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHH---HHHHHHHHHHHHhhccCCCCc---chhhHhhhHHHHHHHhcCCCHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAE---TKKKAAQIVGNMCSLVTEPKD---MIPYIGLLLPEVKKVLVDPIPEVRSVA 1639 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~---vr~~a~~~l~~l~~~~~~~~~---l~~~l~~ll~~L~~~L~d~~~~VR~~A 1639 (2612)
...++...-..++|.+.+++...... ........+.-+++.....+. -.+.....- -...+.+ .......
T Consensus 92 ~~Rl~~~e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~--~~~~l~~--~~~~~~l 167 (501)
T PF13001_consen 92 FDRLDDEERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFR--DSLGLSD--FCDDVFL 167 (501)
T ss_pred hhcCCHHHHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHH--HHHhhcc--hHHHHHc
Confidence 22344555567888888887643221 111222222223333222110 000000000 0000001 0000000
Q ss_pred HHHHHHHH-----h-----hhCCCCchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhcc
Q 000051 1640 ARAIGSLI-----R-----GMGEENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCS 1706 (2612)
Q Consensus 1640 ~~aL~~L~-----~-----~~g~~~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~ 1706 (2612)
..-.+.+. . .......+.+-..-.+...... ....+....+.=-.++.-+....+ ++.++.++-...
T Consensus 168 ~~~~~~~~~l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsa 247 (501)
T PF13001_consen 168 APWFSKFLLLQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASA 247 (501)
T ss_pred chhhccccccccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEe
Confidence 00000000 0 0000001111110001111100 000111111110111111111111 234444444556
Q ss_pred CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHh-hcC-C-----CChhHHHHHHHHHHHHHHHhhhchhhhhHHH
Q 000051 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLA-D-----ENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2612)
Q Consensus 1707 ~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~-~L~-d-----~~~~VR~~Al~al~~lv~~~~~~~i~~llp~ 1779 (2612)
+++..|-..+-..+..+...+.+ .+.+..++...+. ++. + -...+|...+.-+..- ..+....+..+..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~ed--~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS--~~Aa~~~~~~~~i 323 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLED--PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS--VIAATSFPNILQI 323 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh--HHHHhCCccHHHH
Confidence 67777777777777777665443 2333334444331 100 1 1233444443333221 1122234556666
Q ss_pred HhhccCCC--chHHHHHHHHHH---HHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc-
Q 000051 1780 VEDGIFND--NWRIRQSSVELL---GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR- 1853 (2612)
Q Consensus 1780 L~~~l~d~--~w~vR~~a~~ll---~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~- 1853 (2612)
+..++.++ +.|.|..+++.+ ...+.+++ ..+.+.+++ .++..++...
T Consensus 324 ~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~-----------------------~~~l~~l~~----~i~~~g~p~~~ 376 (501)
T PF13001_consen 324 VFDGLYSDNTNSKLKSLALQFIRGSSWIFKHIS-----------------------PQILKLLRP----VILSQGWPLIQ 376 (501)
T ss_pred HhccccCCccccccchhcchhhhcchHHhhhcC-----------------------HHHHHHHHH----HHHhcCccccc
Confidence 67788777 778888888777 44433221 112222222 2222222222
Q ss_pred -------cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh------
Q 000051 1854 -------SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV------ 1920 (2612)
Q Consensus 1854 -------~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~------ 1920 (2612)
...+...|..+.+++|.++...|..+..-+ .++..++..+.++..++|...-.||+.+...+....
T Consensus 377 ~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~ 455 (501)
T PF13001_consen 377 DSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQ 455 (501)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 234678999999999999999887663322 345666777788899999999999999987764321
Q ss_pred hhhHHHH-HhhhcCCCChhHHHHHHHHHHH
Q 000051 1921 LPSIIPI-LSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1921 l~~llp~-L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
....+.. +.....+....+|..+..+...
T Consensus 456 ~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 456 KRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 1111111 1222234455566666665544
No 159
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.37 E-value=13 Score=47.91 Aligned_cols=253 Identities=15% Similarity=0.129 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1877 KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL------GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1877 ~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~------~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
..|...+-.++..++.+=+.+.-..|. .+.+..++... |..+...++..+.+++.+++..||..+|..|+.+
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~ 118 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALL 118 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 344455555555555544433333332 34444555422 3346677778888899999999999999999988
Q ss_pred HHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhh
Q 000051 1951 MASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2612)
Q Consensus 1951 i~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~ 2030 (2612)
+...++ .-......++..+.+-+-|..+.||..|..++..+++.-+... ..+...+...++.+..++..-.++..+.
T Consensus 119 ~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDPS~EVRr~allni~- 195 (885)
T COG5218 119 SDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDPSDEVRRLALLNIS- 195 (885)
T ss_pred HHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCcHHHHHHHHHHHee-
Confidence 766654 2233446677777777789999999999999999886555422 2334455555665554443333333332
Q ss_pred hcccccccccchhhccCCcch---hHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc
Q 000051 2031 VRTTAVLPHILPKLVHLPLSA---FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107 (2612)
Q Consensus 2031 ~~~~~vlp~Lip~L~~~~~~~---~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~ 2107 (2612)
-.+...|.++..-.+..... +.++++-.++...-.+..++. + .+--.+.+.+..++.++..++..--....+
T Consensus 196 -vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri---~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d 270 (885)
T COG5218 196 -VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI---L-LMEWGLLDREFSVKGALVDAIASAWRIPED 270 (885)
T ss_pred -eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee---h-hhhhcchhhhhhHHHHHHHHHHHHhccccc
Confidence 13334455544443322111 123333333332222222222 1 122235566666666655544321111111
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
..+-+ |+..+ |...|..+..++..+|+..+..
T Consensus 271 ~~lve----Lle~l---DvSr~sv~v~aik~~F~~R~D~ 302 (885)
T COG5218 271 LRLVE----LLEFL---DVSRRSVLVAAIKGVFEKRPDV 302 (885)
T ss_pred ccHHH----HHHHH---hhhhHHHHHHHHHHHHhhcccc
Confidence 11112 22222 3445557777888888765533
No 160
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.35 E-value=6.7 Score=51.38 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhh--------hhhHHHHHh--
Q 000051 1862 QAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV--------LPSIIPILS-- 1929 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~--------l~~llp~L~-- 1929 (2612)
..+.+++..++.+.|. .+.+|++.++..++.++.+ +...-...-...++-++-+.|... .+.+...+.
T Consensus 218 ~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~ 297 (435)
T PF03378_consen 218 HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEK 297 (435)
T ss_dssp HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHH
Confidence 4578899999998886 6899999999999999984 444433333344444444444331 111111111
Q ss_pred ---hhcCC-CChhHHHHHHHHHHHHHHhhCh--hhHHHhHhHHHHHHHHHhcC
Q 000051 1930 ---RGLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCD 1976 (2612)
Q Consensus 1930 ---~~L~d-~~~~vR~~a~~aL~~li~~~~~--~~l~~~l~~ll~~l~~~L~D 1976 (2612)
..++. ..+.-|.-++.++..++..... ......+..+++.+.+.+..
T Consensus 298 v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~ 350 (435)
T PF03378_consen 298 VWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLER 350 (435)
T ss_dssp THHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcC
Confidence 11111 2344577777888887754321 11234556666666665543
No 161
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.4 Score=60.16 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~ 1931 (2612)
.+|.+..||++|+-+++-++-..+.. ++..++.|. +-+..+|...+-+||-.|...|.++. +.+|...
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a---~diL~~L 629 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA---TDILEAL 629 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH---HHHHHHH
Confidence 68999999999999998776544432 233333344 56889999999999999988887644 3445555
Q ss_pred cCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHH
Q 000051 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980 (2612)
Q Consensus 1932 L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~ 1980 (2612)
+.|++.-|||++|.+++-++-++.+ .+.+.+..|...+.+.+.|.+++
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQCNP-ELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhcCc-ccChhHHHHHHHHHHHHhhhhHh
Confidence 6688889999999999998877764 45666777877777777776543
No 162
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.30 E-value=0.19 Score=56.66 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHH------------HHHhcCCCHHHHHHHHHHHHHHHHHhchh------
Q 000051 1859 SVRQAALHVWKTIVAN-TPKTLKEIMPVLMNTL------------ISSLASSSSERRQVAGRALGELVRKLGER------ 1919 (2612)
Q Consensus 1859 ~VR~aA~~~l~~l~~~-~~~~l~~~l~~ll~~L------------~~~L~~~~~~~R~~A~~aL~~lv~~~~~~------ 1919 (2612)
+||..|+.++..++.. .++.+..|++.++|.- .-.+.|++..+|..|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999998 6788888888887743 33456899999999999999998764211
Q ss_pred -------h------hh----hHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhH-HHhHhHHHHHHHHHhcCCcHH
Q 000051 1920 -------V------LP----SIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILE 1980 (2612)
Q Consensus 1920 -------~------l~----~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l-~~~l~~ll~~l~~~L~D~d~~ 1980 (2612)
+ +. ++-..|...+. +.+..+-...+.++..++...+-..+ .+++..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 22222333444 34666777888888888776665544 456788888889999899999
Q ss_pred HHHHHHHHHHHHHH
Q 000051 1981 VRESAGLAFSTLFK 1994 (2612)
Q Consensus 1981 Vr~~A~~al~~l~~ 1994 (2612)
|+..+..+++.+..
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988887754
No 163
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.29 E-value=0.17 Score=66.25 Aligned_cols=243 Identities=18% Similarity=0.252 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHHHHHhChhhH-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
..+|....++|.+.+..+..+.. ..++|.++..+.-.+ .. ..++..+-.+...+.. .+|-..++|.+++.++-.+
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~-~~~ltpl~k~~k~ld~--~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AA-SDFLTPLFKLGKDLDE--EEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cc-hhhhhHHHHhhhhccc--cccccchhhhHHHHhcCcc
Confidence 44677788888887777777644 566777766554332 00 0112222222222322 3577779999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhchh-hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHH
Q 000051 1751 ESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~i-~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~ 1829 (2612)
..||-.-+.-+..++..+.+..+ +.++|.+..|+.|.+.-+|...+..+..+.-.++.
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~--------------------- 402 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK--------------------- 402 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch---------------------
Confidence 99999988888888888876654 55999999999999999999888877776533210
Q ss_pred HHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRAL 1909 (2612)
Q Consensus 1830 ~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL 1909 (2612)
..++ .+++..+.....|....+|.....+++.+........+. +.+.......+.|+-..-|.++..++
T Consensus 403 -----~~Ln----~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~--~vL~~aftralkdpf~paR~a~v~~l 471 (690)
T KOG1243|consen 403 -----RNLN----GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK--RVLASAFTRALKDPFVPARKAGVLAL 471 (690)
T ss_pred -----hhhc----HHHHHHHHhhCccccCcccccceeeecccccccchhhhc--cccchhhhhhhcCCCCCchhhhhHHH
Confidence 1122 245555555667888888888888888777653222111 11222333456777777888888888
Q ss_pred HHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000051 1910 GELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1910 ~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~l 1950 (2612)
....+..... +...++|.+.-..-|++..+|..+..++...
T Consensus 472 ~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 472 AATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 7666655433 5667788777777788888888877766544
No 164
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.23 E-value=6.3 Score=59.57 Aligned_cols=310 Identities=12% Similarity=0.012 Sum_probs=169.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhHHH
Q 000051 1890 LISSLASSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLS 1961 (2612)
Q Consensus 1890 L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~-d~~~~vR~~a~~aL~~li~~~~~~~l~~ 1961 (2612)
+...-.+++..++..|...|..++-++-+. +...++..+...+. ..+.++|..+..++..++...+ ..+..
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~-~nIkS 1220 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV-NNVKS 1220 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhc
Confidence 333334567778888888887777654321 33456665655444 4678999999999999887655 45667
Q ss_pred hHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-------hhhhhhHHHHHHhccCC---CcchHHHHHHHHHhhh
Q 000051 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSV 2031 (2612)
Q Consensus 1962 ~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-------~~~~~ilp~Ll~~L~~~---~~~~~al~~L~~il~~ 2031 (2612)
-++.+...+..+..+.++.+-..|...+..++..+-. ..+.+++..+.+--... +.+-.+++.|..+...
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 7889999998888888888888888877777654222 22333333332222222 2223444444432110
Q ss_pred cccccccccch-h-hccCCcchh-HHHHHHHHHHHh-CCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc
Q 000051 2032 RTTAVLPHILP-K-LVHLPLSAF-NAHALGALAEVA-GPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE 2107 (2612)
Q Consensus 2032 ~~~~vlp~Lip-~-L~~~~~~~~-~~~al~~La~~~-g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~ 2107 (2612)
-.+.-+....+ . ...++.... ............ ......+.=.++-.|.+...+++.+||..|+..+-.++..++.
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 00000000000 0 000000000 000000000000 1111223333455555555688999999999998888876654
Q ss_pred ----cc----HHHHHHHHHhhcCC------------------------CCh--hHHHHHHHHHHHHHHhcccchhccHHH
Q 000051 2108 ----EG----VESLVSELLKGVGD------------------------NQA--SIRRSSAYLIGYFYKNSKLYLVDEAPN 2153 (2612)
Q Consensus 2108 ----~~----l~~ll~~Ll~~l~~------------------------~~~--~vR~~A~~~L~~l~~~~~~~~~~~~~~ 2153 (2612)
+. +..++-.++..++. ..| .+-..|+..+..++...=..+...+++
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 33333344333321 011 233345555555554433445566777
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHH
Q 000051 2154 MISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAI 2200 (2612)
Q Consensus 2154 il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l 2200 (2612)
++..|..++..+++.+...+..||..++...+...-+.....+.+++
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 77777788888899999999999999998877655444444433333
No 165
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.20 E-value=0.23 Score=55.44 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh--Chh
Q 000051 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK-LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA--GKS 1957 (2612)
Q Consensus 1884 ~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~-~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~--~~~ 1957 (2612)
+.++|.+++.+.+.+.--|..|...+.+++.. .++. ++|++++.+.++|+..++++...++.+|..++.+. -++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34556666677788888899999999999998 4444 57899999999999999999999999998874332 247
Q ss_pred hHHHhHhHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHhChhh
Q 000051 1958 QLLSFMDELIPTIRTALCD-----------SILEVRESAGLAFSTLFKSAGMQA 2000 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D-----------~d~~Vr~~A~~al~~l~~~~g~~~ 2000 (2612)
.+.+|+.+++|.+....+. .+..+++....++..+-.+.|+++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 7889999999998743321 234455555666666656656543
No 166
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.18 E-value=0.18 Score=56.94 Aligned_cols=126 Identities=22% Similarity=0.309 Sum_probs=79.4
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHh
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
.-++.|++++||.+|+.++..+.+..+ +++ ..+ .+..... ..|... ...+..++-.+.++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gsk-~~L-------~~A-e~~~~~~---------~sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGSK-PFL-------AQA-EESKGPS---------GSFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHccH-HHH-------HHH-HhcCCCC---------CCcccH--HHHHHHHHHHHHHH
Confidence 346789999999999999999987532 111 111 1111000 011111 12333344444443
Q ss_pred h-----cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000051 1585 L-----RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1585 l-----~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~ 1650 (2612)
+ .+.+..+-....+++..+.......+--..+++.++..+...+.+.++++|..+..++|.+....
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 3 34466677778888888877533322234577888888889999999999999999999998753
No 167
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.16 E-value=4.7 Score=52.83 Aligned_cols=224 Identities=11% Similarity=0.104 Sum_probs=126.3
Q ss_pred CChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhc----CC-CChhHHHHHHHHHH
Q 000051 2066 PGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGV----GD-NQASIRRSSAYLIG 2137 (2612)
Q Consensus 2066 ~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l----~~-~~~~vR~~A~~~L~ 2137 (2612)
.++.|+...++..|+..+..+....-+...+|+-+++....+ +....+++.|...+ ++ +||.--....++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 456778888888888877432212223344555555443322 33444555444443 44 57888888888999
Q ss_pred HHHHhccc----chhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc----cccccHHHHHH------------
Q 000051 2138 YFYKNSKL----YLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK----EVQPSYIKVIR------------ 2197 (2612)
Q Consensus 2138 ~l~~~~~~----~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~----~~l~~lv~~l~------------ 2197 (2612)
.+.+.... .+..+-+.+++.+...+..+-.+....+++.++.++...+. +.+..+.+++.
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP 177 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP 177 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC
Confidence 88776432 23344566667777777666666777778888888877662 22223333321
Q ss_pred ---HHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhH
Q 000051 2198 ---DAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITG 2274 (2612)
Q Consensus 2198 ---~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~ 2274 (2612)
+.+...-.. +. ..+.-+..+.+++.+|...+.+...+ ..+...|..++...+.+.+.||+.+|+.
T Consensus 178 alvrLL~a~i~k------~~----~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~ 245 (435)
T PF03378_consen 178 ALVRLLQAYIKK------DP----SFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFT 245 (435)
T ss_dssp HHHHHHHHHHHH------HG----GG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHH
T ss_pred cHHHHHHHHHHh------Cc----hhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 111111000 00 00112356778899997777766544 4588999999999998899999999998
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2275 PLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2275 pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
.+..-+...-.+..+..-+..++.++.
T Consensus 246 lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 246 LLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 888777654345444444444444433
No 168
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.09 E-value=2.7 Score=54.13 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=47.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchh--hhhh--HHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000051 1885 VLMNTLISSLA-SSSSERRQVAGRALGELVRKLGER--VLPS--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1885 ~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~--~l~~--llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2612)
.++..|++.+. +.++.+-..|+.=+|++++..+.+ ++.. .-..+.+.+.++|++||..|+.++..++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555666663 556677788888899999887433 3221 33446677889999999999999988754
No 169
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.00 E-value=5.4 Score=60.26 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHh-ccC-------Ch-hHHHHHHH
Q 000051 2289 KSAILSTLSIIIRKGGIALKPFLPQLQT----TFIKCLQDSTRTVRSSAALALGKLSA-LST-------RV-DPLVGDLL 2355 (2612)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lpqL~~----~~~k~L~d~~~~vR~~Aa~aLg~L~~-~~~-------~~-~~~l~~Ll 2355 (2612)
|...+.-|.+++..--..++-.-+.++. .|.+.-.+++..++.-|...|..+.. +-. ++ ..++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 5555666655554322233333345444 45554445567888888888888732 211 11 24566665
Q ss_pred Hhhh-cCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh----CC---hhHH
Q 000051 2356 SSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC----ME---DGQL 2427 (2612)
Q Consensus 2356 ~~l~-~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~----~~---~~~~ 2427 (2612)
..++ ..+.++|+.+++++..++...+.++.. -...|+..+.....++++.+-..+-+++..+... ++ .+.+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 5554 345799999999999999988776633 4456666666666677777767777777665432 22 2334
Q ss_pred HHHHHHHHhhcCCC-CchhhHHHHHHHHHH----HhhC-----C------------------cc---ccC----CchhHH
Q 000051 2428 ADLLQELLNLASSP-SWAARHGSVLVFATF----LRHN-----P------------------SA---ISM----SPLFLS 2472 (2612)
Q Consensus 2428 ~~~l~~ll~~~~~~-~~~~~~~~~~~l~~~----l~~~-----p------------------~~---~~~----~~~~~~ 2472 (2612)
..++.-+.+-.... +...--.++..|..+ .+.. + +. +.. ..+|-.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 44443332211111 111111222222211 1100 0 00 000 135656
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc-CCCCchhhHH-HHHHHHhhcC------------------CCC---
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTTVVVD-ILASVVSALH------------------DDS--- 2529 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~-~l~~~~~~l~------------------~~~--- 2529 (2612)
++..+.+.+.+++++||..|+..+-.++...+.. +++.+..+.. +|-+++..++ +++
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 6666667777889999999999999998877654 4444433322 3333322211 011
Q ss_pred -----HHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000051 2530 -----SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2612)
Q Consensus 2530 -----~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~ 2586 (2612)
.+.-..|+..+-.+-.+..+.+.+.|+.++-.+..|++..|..+-..+-.|+..++.
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 144455555555555566677888999999999999999988887776666666653
No 170
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.49 Score=57.80 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=116.7
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHH------HHHHHHh
Q 000051 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL------VGDLLSS 2357 (2612)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~------l~~Ll~~ 2357 (2612)
.+.+-|..++.-|..++..++....-.--..+..++..+++++.++|..|+..+|..+.-.|.+... ++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 3567788899999999887765322111223455666899999999999999999998766655543 5667777
Q ss_pred hhc-CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhCChhH--HHHH-H
Q 000051 2358 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LADL-L 2431 (2612)
Q Consensus 2358 l~~-~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~--~~~~-l 2431 (2612)
+.. .+..+|..++.|+...|.+.......-..-.=+..|...+.+ .+...+..+..+++.+......+. +... +
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 754 346889999999999998865544333333336677778877 456677889999999987655432 1111 1
Q ss_pred HH-HHhhcCCCCchhhHHHHHHHHHHHhh
Q 000051 2432 QE-LLNLASSPSWAARHGSVLVFATFLRH 2459 (2612)
Q Consensus 2432 ~~-ll~~~~~~~~~~~~~~~~~l~~~l~~ 2459 (2612)
+. +..+....++..+..+..++...+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 11 12334445555566666666665544
No 171
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.83 E-value=22 Score=47.69 Aligned_cols=290 Identities=15% Similarity=0.075 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC
Q 000051 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2612)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D 1431 (2612)
...|..|+..|...+.......+. .+-...++++..++....|++++..+..+.++-.......-......+-..-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 467888888888888887776554 566677777777767788999988888888765431111111222222111112
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCC---------------------------ChhhHHHHHHHHHH
Q 000051 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~---------------------------~w~~r~~a~~~L~~ 1484 (2612)
++-..|-.+..+|..=..++.. ....+.|.+...+... +-+.-..-+.++..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2222333332222211112211 1133444443333110 00000111222333
Q ss_pred HHhhCchhh-hhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHh--hcCChhHhhHHHHHHhhcCCCCh--hHHHHHH
Q 000051 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPND--HTKYSLD 1558 (2612)
Q Consensus 1485 ia~~~p~~l-~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~--~~~~~~i~~ivp~Ll~~l~d~~~--~~r~al~ 1558 (2612)
+..-....+ ...+..++..++.++..+ ++..=..+...+..+.. .+++..+..++..|.....-.+- ..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332111111 233456666666665443 33334677777777765 44555667777777776433211 1113444
Q ss_pred HHHhccccccCChhhHhhHHHHHHHhh------cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHh--hhHHHHHHHhcC
Q 000051 1559 ILLQTTFVNTVDAPSLALLVPIVHRGL------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVD 1630 (2612)
Q Consensus 1559 ~L~~~~~~~~i~~~~l~~iip~L~~~l------~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~--~ll~~L~~~L~d 1630 (2612)
.|..+. .+ ...+..+...+ ..++..+-+.|...++.+....+...-..-... .+++.+...+..
T Consensus 241 nL~~S~----~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~ 312 (464)
T PF11864_consen 241 NLLKSH----LG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS 312 (464)
T ss_pred HHHcCc----cH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence 443311 11 22333444444 123567777888999887764322111111122 489999999987
Q ss_pred CCHHHHHHHHHHHHHHH-hhhCC
Q 000051 1631 PIPEVRSVAARAIGSLI-RGMGE 1652 (2612)
Q Consensus 1631 ~~~~VR~~A~~aL~~L~-~~~g~ 1652 (2612)
+++.|-......+..+. ..++.
T Consensus 313 ~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 313 NSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCCeehHHHHHHHHHHHhHhhhh
Confidence 77777667777776666 44443
No 172
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.82 E-value=15 Score=47.61 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHhhhCcch----hh--hhcHHHHHHHHHhC---CC---CHHHHHHHHHHHHHHHHHhc--ccch-h
Q 000051 1352 YGERRGAAFGLAGVVKGFGISS----LK--KYGIAATLREGLAD---RN---SAKRREGALLAFECLCEKLG--RLFE-P 1416 (2612)
Q Consensus 1352 ~~~R~~Aa~~L~~l~~~lg~~~----l~--~~~i~~~L~~~i~~---~~---~~~~R~~Al~al~~L~~~~~--~~~~-~ 1416 (2612)
-..|..|...|.+..+...... +. -.-++.+++.-+.. ++ +.+.-..|+.+++.+..... ..+. .
T Consensus 7 ~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d 86 (372)
T PF12231_consen 7 RSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDD 86 (372)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChH
Confidence 3567777777777666443111 11 00223333332222 11 34455577777777663211 1121 2
Q ss_pred hHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhcHH-----hHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHh
Q 000051 1417 YVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQ-----GVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1417 ~v~~ilp~ll~~l~D~~--~~VR~aa~~al~~i~~~l~~~-----~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~ 1487 (2612)
...-++...+..+.+++ ..+......++..- .+++. .+..++.. +..+.+ +.-.+-...+.++..+..
T Consensus 87 ~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~~~~~~~~~~l~~~-l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 87 FASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPKIMTSDRVERLLAA-LHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCcccchhhHHHHHHH-HHHhhccCCchhHHHHHHHHHHHHHH
Confidence 22236666666776553 23333333333221 23332 22333332 222332 223444556777788888
Q ss_pred hCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-hhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccc
Q 000051 1488 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2612)
Q Consensus 1488 ~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2612)
..|+.+..+....+|.++..+-+....+|..|...+..+...++. ..+...+...++....+.
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~---------------- 227 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG---------------- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc----------------
Confidence 889999888888888888888888999999988777776665542 233333333322211111
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC-CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~-~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
.....+.+.+.+.+.++ +.-..+.++.+.+...++.+ -+--+++...+.....+++++++.+|..|..+...
T Consensus 228 -----~~~~~~~~~L~~mi~~~--~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~ 300 (372)
T PF12231_consen 228 -----KLIQLYCERLKEMIKSK--DEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRR 300 (372)
T ss_pred -----cHHHHHHHHHHHHHhCc--CCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 12223444444444442 11223445555555444443 23456788888889999999999999999999999
Q ss_pred HHhhhCCC
Q 000051 1646 LIRGMGEE 1653 (2612)
Q Consensus 1646 L~~~~g~~ 1653 (2612)
++.....+
T Consensus 301 liy~~~~~ 308 (372)
T PF12231_consen 301 LIYASNPN 308 (372)
T ss_pred HHHHhcCC
Confidence 99866543
No 173
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.81 E-value=1.1 Score=63.03 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH----
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---- 1454 (2612)
-+..+.+.+.+++-.. . .|..++..+.......-..++..+.+.+-......++.+|.+|+-++..+....-..
T Consensus 396 av~~i~~~I~~~~~~~-~-ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-D-EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S-H-H-HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCCH-H-HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 3455666666543221 2 244445555544433233344444333322222356789999988888776632111
Q ss_pred ---------hHHhHHHHHHhhhc----CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC---CHHHHHH
Q 000051 1455 ---------GVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2612)
Q Consensus 1455 ---------~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~---~~~VR~a 1518 (2612)
..+.+++.+.+.+. ..+-..+..++.+||++.. +..++.+..++.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 22455555555444 4455677888889988752 55667777777665 7789999
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCCh--hHH-HHHHHHHh
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQ 1562 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~--~~r-~al~~L~~ 1562 (2612)
|++||..++...+ ..+.+.++....|+.+ .+| .|+..+..
T Consensus 544 Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 544 AIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 9999998865543 3344444444444433 356 45555543
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.74 E-value=0.05 Score=42.05 Aligned_cols=30 Identities=43% Similarity=0.722 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
++|.+.+.++|++|+||..|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999874
No 175
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=26 Score=47.79 Aligned_cols=276 Identities=15% Similarity=0.118 Sum_probs=148.2
Q ss_pred CcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHh
Q 000051 2224 PKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2224 p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~-~~~~vk~~al~~L~~L~~~ 2302 (2612)
|-++++.+|.+++++.++ +.-.++...+..+++.+. ..+.||..++...+-.++... .....+..++..+|.+...
T Consensus 544 P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~ 620 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSR 620 (982)
T ss_pred CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHh
Confidence 678889999999999744 344567777999998886 889999999877666666532 3456788899999988876
Q ss_pred cC-CCccCchHHHHHHHHH----HhcCC--CHHHHHHHHHHHHHHHhcc--------------CC----------hhHHH
Q 000051 2303 GG-IALKPFLPQLQTTFIK----CLQDS--TRTVRSSAALALGKLSALS--------------TR----------VDPLV 2351 (2612)
Q Consensus 2303 ~~-~~l~p~lpqL~~~~~k----~L~d~--~~~vR~~Aa~aLg~L~~~~--------------~~----------~~~~l 2351 (2612)
.. ...-.|+-+|+..++. ++... +++-+.+.+.-++.+..+- |- +-.+.
T Consensus 621 ~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~ 700 (982)
T KOG2022|consen 621 LKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVL 700 (982)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHH
Confidence 54 2222355555554443 32322 4555666666566553321 10 11122
Q ss_pred HHHHHhhhc------CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHhh--C
Q 000051 2352 GDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASIL-GIMSQC--M 2422 (2612)
Q Consensus 2352 ~~Ll~~l~~------~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~L-g~L~~~--~ 2422 (2612)
.+++..++. .+.++-+..+..+..-+...+..+..++.+.+..++........-..-...+.|+ ...... .
T Consensus 701 ~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~ 780 (982)
T KOG2022|consen 701 QKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCK 780 (982)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhcccccc
Confidence 233332221 2344555555444444444555566788899998888754433221111111111 111110 0
Q ss_pred C--hhHHHHHHHHHH---hhcC-CCCchhhHHHHHHHHHHHhhCCccccC--CchhHHHHHHHHhhhccCChhHHHhHHH
Q 000051 2423 E--DGQLADLLQELL---NLAS-SPSWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLKSSLKDEKFPLREASTK 2494 (2612)
Q Consensus 2423 ~--~~~~~~~l~~ll---~~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~--~~~~~~i~~~l~~~~~~~~~~ir~~a~~ 2494 (2612)
| ...+...+++.+ +... .++.......+..+..+++..|.-... .++..-+..+....+.+..+..-+++..
T Consensus 781 ~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~q 860 (982)
T KOG2022|consen 781 PLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQ 860 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 0 012333333321 1111 344444444555777788888765432 2222223446666777766554444444
Q ss_pred HHHHHHhh
Q 000051 2495 ALGRLLLH 2502 (2612)
Q Consensus 2495 alg~ll~~ 2502 (2612)
=+..++..
T Consensus 861 F~t~~~~~ 868 (982)
T KOG2022|consen 861 FLTALATY 868 (982)
T ss_pred HHHHHHhh
Confidence 44444443
No 176
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.63 E-value=23 Score=47.18 Aligned_cols=343 Identities=15% Similarity=0.174 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hCCCCchhhHHHHHHHhc
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALK 1667 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~-~g~~~~~~ll~~L~~~L~ 1667 (2612)
++++-..+.+++|...+.+.- .-+. -+..++.+.+.++ ..++|.+|..|+-+++.. +.+-.--.++..+...+.
T Consensus 206 npgl~~~cLdc~g~fVSWIdI-nLIa--Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDI-NLIA--NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhh-hhhh--chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 778888888888887765422 1111 2346667777766 578999999999888763 332211123333322211
Q ss_pred -----cCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhc-cCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHH
Q 000051 1668 -----SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2612)
Q Consensus 1668 -----~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~-~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ 1741 (2612)
+.+. .+-...-..++.++.++|.+.. .+.+.+ +..+...++.+.. -+..++|.
T Consensus 281 lfg~~s~dq-~~d~df~e~vskLitg~gvel~-----~i~s~lnseld~~~kqn~l~---------------~ll~~vpy 339 (980)
T KOG2021|consen 281 LFGYHSADQ-MDDLDFWESVSKLITGFGVELT-----IIISQLNSELDTLYKQNVLS---------------ILLEIVPY 339 (980)
T ss_pred HHhhhcccc-ccCchHHHHHHHHHhhcceeee-----hhHhhhhhccCHHHHHHHHH---------------HHHHHHHH
Confidence 1110 0112233446667777776522 111111 2224444443322 23347788
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC-CCC
Q 000051 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG-GSD 1820 (2612)
Q Consensus 1742 ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~-~~d 1820 (2612)
+++.+.|+++++-......+...+..+... + .+.+++ ++-.. ..+-....++.-....-..++ .++
T Consensus 340 llq~l~~e~ddit~~ifpFlsdyl~~LKkl------~----~ls~~q-k~~l~--~illai~kqicydemy~nddn~tg~ 406 (980)
T KOG2021|consen 340 LLQFLNNEFDDITAKIFPFLSDYLAFLKKL------K----ALSSPQ-KVPLH--KILLAIFKQICYDEMYFNDDNVTGD 406 (980)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhhc------c----cccchh-hccHH--HHHHHHHHHHhccHHhhcccCCCCc
Confidence 888888887776555444444333221110 0 011110 00000 011111111100000000000 011
Q ss_pred CCccchHHHHHHH---HHHh---ChhhH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhH--------H--
Q 000051 1821 DEGASTEAHGRAI---IEVL---GRDKR----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--------K-- 1880 (2612)
Q Consensus 1821 dd~~~~~~~~~~l---~~~L---g~~~~----~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l--------~-- 1880 (2612)
|+++.-++.++.+ .+.+ .++.+ .+.++.-.+.....+|..-+.|+..+-.+.+..+... .
T Consensus 407 EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~ 486 (980)
T KOG2021|consen 407 EEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS 486 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence 1111122232222 2222 22211 1223333334567788999999998888877554211 0
Q ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHh---c--hhhhhhHHHHHh--hhcCCCChhHHHHHHHHHHHHH
Q 000051 1881 EIMPVLMNTLISS--LASSSSERRQVAGRALGELVRKL---G--ERVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVM 1951 (2612)
Q Consensus 1881 ~~l~~ll~~L~~~--L~~~~~~~R~~A~~aL~~lv~~~---~--~~~l~~llp~L~--~~L~d~~~~vR~~a~~aL~~li 1951 (2612)
..+..+++.++.. .+.+++.+ ...-+..+++.. . +...|.++..+. ++++..+..||..+.+.+...+
T Consensus 487 ~vl~~~~~ll~tsqv~~h~h~lV---qLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfV 563 (980)
T KOG2021|consen 487 QVLFLNELLLMTSQVLAHDHELV---QLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFV 563 (980)
T ss_pred HHHHHHHHHHHHcccccCCchHH---HHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHH
Confidence 1122233333221 22344444 444444444432 1 123455555554 3778889999999999988887
Q ss_pred HhhChhhHHHhHhHHHHHHHHHh
Q 000051 1952 ASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1952 ~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
.... ..+.+|.+.++..+...|
T Consensus 564 KlLk-kqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 564 KLLK-KQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 7653 466778888888888777
No 177
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.62 E-value=1.6 Score=57.30 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHhHHhHHH-HHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcC
Q 000051 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTD 1510 (2612)
Q Consensus 1434 ~~VR~aa~~al~~i~~~l~~~~v~~ilp-~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D 1510 (2612)
-..|-.|..+++.++..++......+.. .+...|.+...-.|..+..++..++......-... .+.+.+.|..+|++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 3567889999999999998888877776 48888998888889999999999997644321111 34555666666663
No 178
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.55 Score=55.76 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=108.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH---HhHHHH
Q 000051 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPS 1462 (2612)
Q Consensus 1386 ~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v---~~ilp~ 1462 (2612)
.+.++ ||...-.++..+..+++.-++.+.+.+..++..+.+.+++....|-++|+.++..+++.+..... +.++-.
T Consensus 96 ~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~ 174 (334)
T KOG2933|consen 96 KLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ 174 (334)
T ss_pred HhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 79999999999999999888888899999999999999999999999999999999998876643 333333
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2612)
|+..-..++-.++..|-.+|.+|.++...+ .+++.|..++++.++.+|..++.+.......++
T Consensus 175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 175 LLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 333334556788999999999998865432 345666667889999999999988776665553
No 179
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=3.7 Score=53.49 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=103.8
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHhc-Chhh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch---
Q 000051 1847 AALYMVRSDVSLSVRQAALHVWKTIVAN-TPKT----LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--- 1918 (2612)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~l~~~-~~~~----l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--- 1918 (2612)
+-+|..+.-.+..||..|+.++-.+..- .|.. ...+++.=...+.+.|.|+.+.+|..|...+..+...+-+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456678888999999999998777652 2333 2334444455778889999999999999888887766543
Q ss_pred -hhhhhHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1919 -RVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1919 -~~l~~llp~L~~~L-~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
.++-.++..+..-+ .|...+||..+..+|..++.. ..--+.++.++|.+...+.|....||-++...+..+-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33334444333333 366779999999999887643 2334567888999999999999999999887776653
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=0.75 Score=62.15 Aligned_cols=218 Identities=21% Similarity=0.181 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhccCCh------hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcCh-HHHHHHHHHHHHhh
Q 000051 2328 TVRSSAALALGKLSALSTRV------DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLV 2400 (2612)
Q Consensus 2328 ~vR~~Aa~aLg~L~~~~~~~------~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~-~~~~~i~~~L~~~l 2400 (2612)
.=|.+|...||++..++|-. -.++|-.++.++++..++|-...--+..|+..- ..... -..+.........+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEe
Confidence 34778888999987766531 246888899999888888887766666666432 22211 11111111111222
Q ss_pred cC---CCHHHHHHHHHHHHHHHhhCChhHHH----HHHHHHHhhcCC-CCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2401 YH---DDDHVRVSAASILGIMSQCMEDGQLA----DLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2401 ~~---~~~~vr~~aa~~Lg~L~~~~~~~~~~----~~l~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
.+ -+++-|.++|-.|..++..++-.+-. +++.--+..+.+ +.+..|+-...+|+.+-.+.+.+-. .+..+.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw-~G~r~~ 642 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARW-SGRRDN 642 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhh-cccccc
Confidence 22 14689999999999999887754311 111111222233 3677888888899888777765533 233344
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCc-------------hhhHHHH----HHHHhhcCCCCHHHHHH
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANT-------------TVVVDIL----ASVVSALHDDSSEVRRR 2535 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~-------------~~l~~~l----~~~~~~l~~~~~~vr~~ 2535 (2612)
..+.+...+.+.-|+||.+|+-|+|.++.......++.. ......+ ..++..++|.++=||..
T Consensus 643 AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 643 AHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 556677778888999999999999999986321100000 0012222 36777789999999999
Q ss_pred HHHHHHHHHhhC
Q 000051 2536 ALSALKSVAKAN 2547 (2612)
Q Consensus 2536 a~~~l~~~a~~~ 2547 (2612)
.+..+...+..+
T Consensus 723 v~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 723 VVVALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHHHhh
Confidence 888877766543
No 181
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.06 E-value=26 Score=45.43 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=135.5
Q ss_pred chhhHhhhHHHHHHHhcC------C-CHHHHHHHHHHHHHHHhh------hCCCCchhhHHHHHHHhccCCCH-HHHHHH
Q 000051 1613 MIPYIGLLLPEVKKVLVD------P-IPEVRSVAARAIGSLIRG------MGEENFPDLVSWLLDALKSDNSN-VERSGA 1678 (2612)
Q Consensus 1613 l~~~l~~ll~~L~~~L~d------~-~~~VR~~A~~aL~~L~~~------~g~~~~~~ll~~L~~~L~~~~~~-~~R~~a 1678 (2612)
+...++.++..+..-+.. + +.++-..|.+++|.+... +.++...-++......+.+.... ......
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344455555555544433 2 667778999999888742 33333333666666666554432 222222
Q ss_pred HHHHHHHHHHhChhhH-----HhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1679 AQGLSEVLAALGTVYF-----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~~l-----~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
..+++. ..++...+ +.++.. +..+.+ ++..+-...+.++..+...++..+..+...-+|.++..+-+...
T Consensus 113 l~~ls~--Q~f~~~~~~~~~~~~l~~~-l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 113 LWCLSD--QKFSPKIMTSDRVERLLAA-LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHHc--CCCCCcccchhhHHHHHHH-HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 222222 22333322 222222 222222 23444456677888888888887777777778888888778888
Q ss_pred hHHHHHHHHHHHHHHHhhhc-hhhh-hHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATT-SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~-~i~~-llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~ 1829 (2612)
.+|..|...+..+...++++ .+.. +.+.+...+.++ +....-++-+..++. +.++....-+.
T Consensus 190 ~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~--------------~~~~~~~a~~i 253 (372)
T PF12231_consen 190 DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIK--------------SKDEYKLAMQI 253 (372)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHh--------------CcCCcchHHHH
Confidence 89998877776666555543 1222 222222222222 434433444444431 10122222334
Q ss_pred HHHHHHHhCh------hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1830 GRAIIEVLGR------DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1830 ~~~l~~~Lg~------~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+..++-.+|. ++.++.+...-.|.++.+..+|..|..+|+.++-
T Consensus 254 W~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 254 WSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555553 3556677777778899999999999999999886
No 182
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.05 E-value=0.51 Score=52.73 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCCh----------------------------------hHH-----H
Q 000051 2312 PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRV----------------------------------DPL-----V 2351 (2612)
Q Consensus 2312 pqL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~----------------------------------~~~-----l 2351 (2612)
|+|.+.+++.+..+ ++.+|..+.++||.|..++|.. +.+ +
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi 88 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVI 88 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHH
Confidence 89999999999886 8999999999999996544321 111 2
Q ss_pred HHHHHhhhcCC-HHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2352 GDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2352 ~~Ll~~l~~~d-~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
..|+..++++. ..-...+++|+-.++...|.+. .++.+.+++.+...++..++..|+..-.-|+.|..
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33444444433 3445566777777776666665 67777777777777776666667666666665553
No 183
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.99 E-value=1 Score=50.75 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=62.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhh
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d-~~V~~~a~~aL~~l~~~ 2183 (2612)
..++.+...+.+.+.++++..|-.++..++..++..+ +-+..+...+++.++..++.++ ..+...+..++..++..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999999874 4466888999999999998655 46677888888887653
No 184
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1.3 Score=57.45 Aligned_cols=149 Identities=26% Similarity=0.386 Sum_probs=112.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCC----cchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-
Q 000051 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK----DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM- 1650 (2612)
Q Consensus 1576 ~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~----~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~- 1650 (2612)
..-|.+-|+++-++.+||..|+..+-++.... +|+ ++...++.=...+..+|.|+.|.||..|...+..+...+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999998887653 442 334445555567888899999999999999887776543
Q ss_pred ---CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhh
Q 000051 1651 ---GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1651 ---g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~-~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
++..+.+++..+.+.+..++...+|.....|+..++.. ..-..++.++|.+-..+.+....||-++..++..+-.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33455677777777877777778999999998887643 2223567788877777888899999888887766643
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.53 E-value=2.5 Score=57.47 Aligned_cols=152 Identities=20% Similarity=0.312 Sum_probs=106.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHH-HHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhch--
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL-MNTLISSLAS---SSSERRQVAGRALGELVRKLGE-- 1918 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~l-l~~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~~-- 1918 (2612)
+++.+.+.+.....+.|..-+-+|..+..-.+..-.+.+..- -...+..+.+ -+++.|.+|+-.|+.+++...-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 445555566777888899889999888776554322222210 0011111222 2468999999999999987532
Q ss_pred h--hhhhHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000051 1919 R--VLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1919 ~--~l~~llp~L~~~L~d-~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
. .-..++.+....++| +.+-.|+=.|.+||.+-+..........-......+...+.|+-++||.+|.-||+++..+
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 2 345777788888887 4788999999999999887665544434455667778889999999999999999999875
Q ss_pred h
Q 000051 1996 A 1996 (2612)
Q Consensus 1996 ~ 1996 (2612)
.
T Consensus 673 ~ 673 (1387)
T KOG1517|consen 673 G 673 (1387)
T ss_pred c
Confidence 4
No 186
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.48 E-value=1.6 Score=57.22 Aligned_cols=77 Identities=26% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhHHH-HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcC
Q 000051 1900 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2612)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D 1976 (2612)
..|..|+++||.++...+......+.. .|..+|+++....|..++..+.+...........+..+.+.+.+...|.+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 468899999999999987766655554 68889999999999999998888876554322221134566666666663
No 187
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=93.08 E-value=39 Score=44.68 Aligned_cols=183 Identities=15% Similarity=0.264 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhhccCC-------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHH
Q 000051 1591 ETKKKAAQIVGNMCSLVTE-------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 1663 (2612)
Q Consensus 1591 ~vr~~a~~~l~~l~~~~~~-------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~ 1663 (2612)
..|+..+.++.+++..+-. .++...|++.++..+...+++.+..+|-.+++.++.++..+|...-..+++ +.
T Consensus 211 ~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii 289 (993)
T COG5234 211 ALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-II 289 (993)
T ss_pred HHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HH
Confidence 4555566677776654321 123456788888888888888899999999999999988887543333333 11
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhcc--CCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHH
Q 000051 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS--HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2612)
Q Consensus 1664 ~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~--~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ 1741 (2612)
+.... .. ++..+.+.|. ..++.+-.+++..++ ++...+-+...-+ +.|.
T Consensus 290 ~~~~e--n~------------------------~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~i 340 (993)
T COG5234 290 ELMTE--NM------------------------FLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPI 340 (993)
T ss_pred Hhccc--cc------------------------chhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhh
Confidence 11100 00 0011111111 123333334444443 4444443322222 5555
Q ss_pred HHhhcCCCCh--------hHHHHHHHHHHHHHHHhhhchhhh----hHHHHh-hccCCCchHHHHHHHHHHHHHH
Q 000051 1742 ILDGLADENE--------SVRDAALGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1742 ll~~L~d~~~--------~VR~~Al~al~~lv~~~~~~~i~~----llp~L~-~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
+.+++..+.+ .||+++.-.++.+...++....+. +.--+. ..++|+.-.+|.++...+-+.+
T Consensus 341 I~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 341 IEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred eccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 6666664332 478887766677666665554433 333333 3789999999998887776665
No 188
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.07 E-value=5.9 Score=54.97 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc------
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS------ 1452 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~------ 1452 (2612)
-+.++.+.+.+++- ... .+..++..+.......-..++..+++.+-.-..-+++.+|..|+-++..+....-
T Consensus 358 a~~~i~~~i~~~~~-~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 358 ALKFIKQWIKNKKI-TPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHcCCC-CHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45556666766531 122 2333344444443332333444443333222223467899999888887765321
Q ss_pred -HHhHHhHHHHHHhhhc----CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc---CCCHHHHHHHHHHHH
Q 000051 1453 -AQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1453 -~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~---D~~~~VR~aA~~aL~ 1524 (2612)
...+..++|.+.+.|. +.+-..+...+.+||++.. +..++.+...+. +..+.+|.+|++||.
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALR 505 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 1123566676666554 2344456667888887653 333444444443 345789999999999
Q ss_pred HHHhhcCChhHhhHHHHHHhhcCCCC--hhHH-HHHHHHHh
Q 000051 1525 QVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQ 1562 (2612)
Q Consensus 1525 ~l~~~~~~~~i~~ivp~Ll~~l~d~~--~~~r-~al~~L~~ 1562 (2612)
.++...+. .+.+.++....|+. ..+| .|+..+..
T Consensus 506 ~~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 506 NLAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 98875542 33344444444433 3456 45555543
No 189
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=66 Score=47.03 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=102.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~--~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~ 1455 (2612)
.++..+.+...+...|++|.+++..+..+.- .++ .++....++-..+...+.|....||+.|+.++..++..-.-..
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 5677777666666689999988777666542 344 4566777888888999999999999999999887765211111
Q ss_pred HHhHHHHHHhhhc--CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc
Q 000051 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
+............ +.+--..|+|+..||+++-..|-.+...+|+.+..+.....|+ ..++.++-+++..|-..-
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111112222222 2233457899999999998888877666666666665555665 667888888888776544
No 190
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.04 E-value=22 Score=46.10 Aligned_cols=295 Identities=16% Similarity=0.051 Sum_probs=144.0
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCChh--H-h
Q 000051 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPE--I-A 1536 (2612)
Q Consensus 1462 ~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~--i-~ 1536 (2612)
+++..|..++|.+...++.+|..++...+.. ....++.+++.+...+..+ +...+..|++||..+...-.-.. + .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 3444667789999999999998887544332 1223344555566666543 46667778888888765321111 1 2
Q ss_pred hHHHHHHhhcCCCChhHH------HHHHHHHhccccccCCh-hhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhccC
Q 000051 1537 SLVPTLLMGLTDPNDHTK------YSLDILLQTTFVNTVDA-PSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVT 1608 (2612)
Q Consensus 1537 ~ivp~Ll~~l~d~~~~~r------~al~~L~~~~~~~~i~~-~~l~~iip~L~~~l~d~-s~~vr~~a~~~l~~l~~~~~ 1608 (2612)
..++.|...+.......+ .|+..+ +|...... -.-..++|.+...+++. ..++-+.+..++.|+...-.
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL---SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLL---TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHH---hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 245555555543221222 233333 34432111 11135777777776553 34666777788888876422
Q ss_pred CCCcchhhHh-----hhHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhhCCC-CchhhHHHHHHHhccCCCHHHHHHHH
Q 000051 1609 EPKDMIPYIG-----LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2612)
Q Consensus 1609 ~~~~l~~~l~-----~ll~~L~~~L~d---~~~~VR~~A~~aL~~L~~~~g~~-~~~~ll~~L~~~L~~~~~~~~R~~aa 1679 (2612)
+...-..+.. .+.+.+ +.|.. .++++.+..-..-..+-+.+.+- .|++....+....-.-.+. .+...
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~-H~se~- 338 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPV-HKSEK- 338 (429)
T ss_pred ccchhhhHHHHHHHcChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCC-CCCch-
Confidence 1110111111 222222 22222 24444433322222222222110 2333333332221111111 11111
Q ss_pred HHHHHHHHHhChhhHHhHhHHHHHhcc-CCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCCChhHHHH
Q 000051 1680 QGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDA 1756 (2612)
Q Consensus 1680 ~~L~~i~~~~g~~~l~~llp~l~~~~~-~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~~~~VR~~ 1756 (2612)
-+.+-+..+..+. -+++..+.+.+. +.++.+-.-++.=++.+++..+. ....-++ .-..+++.+.+++++||..
T Consensus 339 -FW~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~e 415 (429)
T cd00256 339 -FWRENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYE 415 (429)
T ss_pred -HHHHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHH
Confidence 1112222222221 123444455442 34566666677778888877643 2211111 4567888899999999999
Q ss_pred HHHHHHHHH
Q 000051 1757 ALGAGHVLV 1765 (2612)
Q Consensus 1757 Al~al~~lv 1765 (2612)
|+.|...++
T Consensus 416 AL~avQklm 424 (429)
T cd00256 416 ALLAVQKLM 424 (429)
T ss_pred HHHHHHHHH
Confidence 999988764
No 191
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=45 Score=45.03 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHH
Q 000051 1753 VRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2612)
Q Consensus 1753 VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~ 1828 (2612)
=|..|.+++..+.+.|... +.+.++..|.+--.|. .+-..+++.+-.++.+ +. .+ ...|++...++
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~--E~ik~~LdTl~il~~~-----dd--~~-~v~dds~qsdd 108 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDP--EIIKYALDTLLILTSH-----DD--SP-EVMDDSTQSDD 108 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCH--HHHHHHHHHHHHHHhc-----Cc--ch-hhcccchhhhH
Confidence 3788888988888776443 3444444444322221 1222233333322211 00 00 00011112334
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHH---HHHHHHHHHHHhcCCCHHHHHHH
Q 000051 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI---MPVLMNTLISSLASSSSERRQVA 1905 (2612)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~---l~~ll~~L~~~L~~~~~~~R~~A 1905 (2612)
.+..+.+.+-. ..+.+..+...+...+..||..+++.+.++..+.|..++.. .|.-+..++..+.|..+.+|..+
T Consensus 109 ~g~~iae~fik--~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIK--NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHc--CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 44445554421 12344555555677788999999999999999998777664 47778888999999999999999
Q ss_pred HHHHHHHHHHhchh--------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1906 GRALGELVRKLGER--------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1906 ~~aL~~lv~~~~~~--------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
.-.|.++++..+.- ++..++.++.+-=.....-|-..+...+-.++...
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 99999999876542 23444444443111111123344555556665544
No 192
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.73 E-value=1.2 Score=51.98 Aligned_cols=111 Identities=15% Similarity=0.239 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH-----hcCCCCH-----hHHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000051 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI-----IGDRFPW-----QVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2612)
Q Consensus 2247 ~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~-----l~~~~~~-----~vk~~al~~L~~L~~~~~~~l~p~lpqL~~ 2316 (2612)
.........+.+... --+.||+.++.+.++.. ++.. +. .+|..|...++..+.+.+...+..-|.+.+
T Consensus 254 tTv~~m~~sLL~N~~-iFvdPY~hqlmPSilTcliakklg~~-p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 254 TTVVMMYSSLLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNV-PDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 344555556665543 34678887777665543 3322 22 378889999999999999988888999999
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhh
Q 000051 2317 TFIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQ 2359 (2612)
Q Consensus 2317 ~~~k~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~Ll~~l~ 2359 (2612)
+++|.+-|. .....-.|.+++..+.. +.|+.+.+...+-+.+.
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 999998885 46677778888887722 35677666555544443
No 193
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.63 E-value=0.96 Score=50.57 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=89.4
Q ss_pred hchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh-HHHHHHhhc-CCCChhHHHHHHHHH-hccccccCChh
Q 000051 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGL-TDPNDHTKYSLDILL-QTTFVNTVDAP 1572 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~-ivp~Ll~~l-~d~~~~~r~al~~L~-~~~~~~~i~~~ 1572 (2612)
+|.+++.+++.++. .+..+|.++.++||.+|.. +|+.-. +....-... .+.+. .+.+... ........++-
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSND---ESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccc---cchhhHHhhccCCCchHHH
Confidence 57888888888854 4689999999999999864 343211 111000000 00011 1111110 00011112223
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~-~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+...++..+.+.++|++- .-...+.+++..+.+..+. + -.+|+++++|.+...+....+..|+.....|+.++..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334566777777777643 3344577777777765443 3 3899999999999999987789999999999888764
No 194
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.60 E-value=1.3 Score=56.22 Aligned_cols=88 Identities=27% Similarity=0.355 Sum_probs=60.0
Q ss_pred HHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhhCCCC---chhhHHHH
Q 000051 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWL 1662 (2612)
Q Consensus 1596 a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~----------d~~~~VR~~A~~aL~~L~~~~g~~~---~~~ll~~L 1662 (2612)
..+.+..|... ..-.+.+|+..++|.+..++. +..|.+|..|+..++.++..++..+ .+.++..+
T Consensus 237 lm~~v~ALl~N--~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 237 LMRMVRALLDN--PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHhcC--CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 33444444432 223578999999999998873 4678999999999999999998763 24455555
Q ss_pred HHHhccCC-CHHHHHHHHHHHHHH
Q 000051 1663 LDALKSDN-SNVERSGAAQGLSEV 1685 (2612)
Q Consensus 1663 ~~~L~~~~-~~~~R~~aa~~L~~i 1685 (2612)
.+.+.+.. +.....|+..+++.+
T Consensus 315 ~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 315 LKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHcCCCCCcchhhHHHHHHHHh
Confidence 55555544 333466777777654
No 195
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=92.58 E-value=55 Score=44.89 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC-CCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHH
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
++.++-++++.+=.+ .......+|.+++.|. .+...+|....-+++.++.++. ..++.++|.+...++|+++-+|..
T Consensus 948 ra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-am~d~YiP~I~~~L~Dp~~iVRrq 1025 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-AMTDRYIPMIAASLCDPSVIVRRQ 1025 (1529)
T ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-HHHHHhhHHHHHHhcCchHHHHHH
Confidence 344555666532110 1234457888888885 3456677766666666655432 235678999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCc-cccccHHHHH
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK-EVQPSYIKVI 2196 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~-~~l~~lv~~l 2196 (2612)
++-.|..+.+. ++..+...++-.++..+-|.++++|.-|-..++.+...-.+ -....+++.+
T Consensus 1026 t~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1026 TIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 99999988763 45555566665555666689999999999999998876443 3333444433
No 196
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=47 Score=43.48 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=101.1
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-----h---hhHHHHHHHHHHHHHHHhcCCC------------HHHH
Q 000051 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SERR 1902 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-----~---~~l~~~l~~ll~~L~~~L~~~~------------~~~R 1902 (2612)
-.++..+..+......+|-+.....|-.+.... . ..|++|+..++..+.....-+. .+.|
T Consensus 290 l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR 369 (559)
T KOG2081|consen 290 LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFR 369 (559)
T ss_pred hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHH
Confidence 345555666667777899999999998876521 1 3468888899998888776322 2457
Q ss_pred HHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcC--CcH
Q 000051 1903 QVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--SIL 1979 (2612)
Q Consensus 1903 ~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D--~d~ 1979 (2612)
......+.++..-.|.. .+..+.-.+.+ ...+|+.-.++...+..++.+..+. -.+++|.+.+.++. ...
T Consensus 370 ~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~ 442 (559)
T KOG2081|consen 370 LKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQA 442 (559)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccch
Confidence 77777887777777764 34443333333 3467888889998888877665543 35677777777653 233
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 000051 1980 EVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l~~~~g 1997 (2612)
.+|..+..-+|.+.+.+.
T Consensus 443 ~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 443 PLRYTSILLLGEYSEWVE 460 (559)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 488888888888877654
No 197
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.31 E-value=20 Score=44.55 Aligned_cols=219 Identities=20% Similarity=0.178 Sum_probs=140.5
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-hhCc-chh-hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-c
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVK-GFGI-SSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-R 1412 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~-~lg~-~~l-~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~ 1412 (2612)
.-++..++.....++|..-..+..-|....+ .... ..+ ....+...|.+++...-..-+-.-|+..++.+.+..| +
T Consensus 10 ~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~ 89 (307)
T PF04118_consen 10 AEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD 89 (307)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3445555555555667766555555555555 2111 111 1225677788888776555666689999999999988 3
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
.+...+.-..|.++..+......||-.-.......+-.+++. ..+.++..++.+++++.-.....+..++..+....
T Consensus 90 ~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v 169 (307)
T PF04118_consen 90 GLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV 169 (307)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc
Confidence 455555566788888888888899988888887776666663 23555566667788777777777788888777653
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcC---------------ChhHhhHHHHHHhhcCCCChhH-
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT- 1553 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---------------~~~i~~ivp~Ll~~l~d~~~~~- 1553 (2612)
... .++..+..++- ++|.+|..|..-+..-..... .++..-++..+...+.|++.-+
T Consensus 170 ~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVq 242 (307)
T PF04118_consen 170 GDK------YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQ 242 (307)
T ss_pred Chh------HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHH
Confidence 322 23333444443 478888888776553322221 1233446778888888887665
Q ss_pred HHHHHHHHh
Q 000051 1554 KYSLDILLQ 1562 (2612)
Q Consensus 1554 r~al~~L~~ 1562 (2612)
|.+++.+..
T Consensus 243 R~~LDlLl~ 251 (307)
T PF04118_consen 243 RGFLDLLLS 251 (307)
T ss_pred HHHHHHHHH
Confidence 467787764
No 198
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.07 E-value=26 Score=42.12 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=122.7
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHH
Q 000051 2275 PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDL 2354 (2612)
Q Consensus 2275 pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L 2354 (2612)
.|+..++...+++.....+.+|..++..-. ...|.+..++......++...+..+...+..+...+++.-+++..+
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~ 79 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPL 79 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 344445666688888999999999887531 3456666666666666677777777777787777667665666666
Q ss_pred HHhh--h------c--CCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhCC
Q 000051 2355 LSSL--Q------V--SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCME 2423 (2612)
Q Consensus 2355 l~~l--~------~--~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2612)
+..+ + + ...+...+...+++.++...+. ....++..|...+ .+.++..+..+.+.+..++...-
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v 154 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV 154 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Confidence 5551 1 1 1245556666788888887544 4455566666666 67788888888888888883211
Q ss_pred hhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccC----CchhHHHHHHHHhhhccCChhHHHh
Q 000051 2424 DGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFPLREA 2491 (2612)
Q Consensus 2424 ~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~----~~~~~~i~~~l~~~~~~~~~~ir~~ 2491 (2612)
- ++.+..+-+......+. |-.....++.++.--|...++ ..+..+++..+++.....+......
T Consensus 155 v-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~ 222 (234)
T PF12530_consen 155 V-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQ 222 (234)
T ss_pred c-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHH
Confidence 1 23333333333332222 323334455554333322221 3455667888888777666433333
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.85 E-value=3.6 Score=57.79 Aligned_cols=207 Identities=18% Similarity=0.183 Sum_probs=101.4
Q ss_pred HHHHHHhhhcC--CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--CChhH
Q 000051 2351 VGDLLSSLQVS--DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC--MEDGQ 2426 (2612)
Q Consensus 2351 l~~Ll~~l~~~--d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~--~~~~~ 2426 (2612)
+..+.+.+... ....|...++||..+ |. .+....+.+.|. ..+..- ..++..+..+... .|..+
T Consensus 364 L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT---~~av~~i~~~I~----~~~~~~-~ea~~~l~~l~~~~~~Pt~e 431 (618)
T PF01347_consen 364 LEELYKQLKSKSKKEQARKIFLDALPQA----GT---NPAVKFIKDLIK----SKKLTD-DEAAQLLASLPFHVRRPTEE 431 (618)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHHHHHH-----S---HHHHHHHHHHHH----TT-S-H-HHHHHHHHHHHHT-----HH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHc----CC---HHHHHHHHHHHH----cCCCCH-HHHHHHHHHHHhhcCCCCHH
Confidence 44444554433 345566666665544 33 233344444433 322111 1244555554433 45444
Q ss_pred HHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhh-CCc-----------cccCCchhHHHHHHHHhhhccCChhHHHhHH
Q 000051 2427 LADLLQELLNL-ASSPSWAARHGSVLVFATFLRH-NPS-----------AISMSPLFLSILDRLKSSLKDEKFPLREAST 2493 (2612)
Q Consensus 2427 ~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~-~p~-----------~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~ 2493 (2612)
+...+.+++.. ...++...+..+.++++.++.. +.. ......+.+.+...+.......+..-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 44433333321 1123334566778888877642 111 1122344455555555555556678888899
Q ss_pred HHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchh
Q 000051 2494 KALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPV 2573 (2612)
Q Consensus 2494 ~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~v 2573 (2612)
.|+|.+-.. ...+.+.+++.+-.+.+..+|.+|+.+++.++...|+.+++ .++| +|....+ +..|
T Consensus 512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~~-I~~n~~e-~~Ev 576 (618)
T PF01347_consen 512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---ILLP-IFMNTTE-DPEV 576 (618)
T ss_dssp HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---HHHH-HHH-TTS--HHH
T ss_pred HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---HHHH-HhcCCCC-ChhH
Confidence 999986221 12233333333323458999999999999999988887765 2233 3333333 3449
Q ss_pred hhhHHHHHHHHhcc
Q 000051 2574 RLAAERCAVHAFQL 2587 (2612)
Q Consensus 2574 k~aae~~~~~~~~~ 2587 (2612)
|.||. ..+++-
T Consensus 577 RiaA~---~~lm~~ 587 (618)
T PF01347_consen 577 RIAAY---LILMRC 587 (618)
T ss_dssp HHHHH---HHHHHT
T ss_pred HHHHH---HHHHhc
Confidence 97774 444444
No 200
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=94 Score=45.59 Aligned_cols=149 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred hchhhhhHHHHhh-ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHH
Q 000051 1770 TTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2612)
Q Consensus 1770 ~~~i~~llp~L~~-~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~ 1848 (2612)
....+.++..+.. ...+..|++|.+.++.+..+++... +. ..+.+++++...
T Consensus 1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~-------------------------Fv--~~~~~r~dI~~l 1573 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI-------------------------FV--SQELRRDDIRKL 1573 (1710)
T ss_pred hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-------------------------hc--ccchhHHHHHHH
Confidence 3344555555553 3356789999999998888776421 00 122345566666
Q ss_pred HHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhchh---hhhh
Q 000051 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGELVRKLGER---VLPS 1923 (2612)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~--~~~~~~R~~A~~aL~~lv~~~~~~---~l~~ 1923 (2612)
+...+.|....||+.|..++..+.......+ .+.-......... +.+......|...|+.++-.++-. .+|.
T Consensus 1574 ~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~---~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~ 1650 (1710)
T KOG1851|consen 1574 LESLLNDDQIEVREEAAKCLSGLLQGSKFQF---VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPK 1650 (1710)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhcccccc---chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHH
Confidence 6667889888999999999999887543222 1111111111122 334556677888888888765432 2333
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHH
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~ 1949 (2612)
.+..+....+++ ..+++.+-..+.+
T Consensus 1651 ~L~~Ls~fa~e~-~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1651 PLMNLSSFARES-AAIKQTVKKTVSE 1675 (1710)
T ss_pred HHHHHHhhcCCc-hHHHHHHHHHHHH
Confidence 333333333333 4455555555544
No 201
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.51 E-value=4.9 Score=51.76 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhh
Q 000051 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLA----------SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSR 1930 (2612)
Q Consensus 1864 A~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~----------~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~ 1930 (2612)
.+++..+|..|..-.+.+|+..++|.++.|+- |.+|..|-.|+..+..++..++.. ..+.++.++.+
T Consensus 267 lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k 346 (576)
T KOG2549|consen 267 LMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSK 346 (576)
T ss_pred HHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34555666666555567888888888887754 457889999999999999988765 46788888888
Q ss_pred hcCCC--ChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhc
Q 000051 1931 GLKDP--SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2612)
Q Consensus 1931 ~L~d~--~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1975 (2612)
.+.|+ ......|++.+|.++....-...+.+.+......+...+.
T Consensus 347 ~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 347 ALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 88775 5678899998888764322222223334444444444443
No 202
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.45 E-value=5 Score=53.50 Aligned_cols=168 Identities=11% Similarity=0.129 Sum_probs=111.0
Q ss_pred hhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1575 ALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1575 ~~iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..+.|.|...++- .+.++...-.+-+..+.+.. .+++ +.+.++|.|...+++.+..+++.+...++.+++.+.-.
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt-~~e~---~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKT-PPEE---VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhC-ChHH---HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 3455666655542 22333333444444445543 2233 56779999999999999999999999999999988644
Q ss_pred C-chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1654 N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1654 ~-~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
. -..++|.+.......+...++..+..|++.++..+..-..-+.++.+.+.....++.+.-++..++..++......-.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~e 503 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVE 503 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccccee
Confidence 3 356778776665455556688888899999987766654445555677777778888888888888777654433111
Q ss_pred hhHHhHHHHHHhhc
Q 000051 1733 NYLQQVLPAILDGL 1746 (2612)
Q Consensus 1733 p~l~~iip~ll~~L 1746 (2612)
-....++|.+....
T Consensus 504 v~~~~VlPlli~ls 517 (700)
T KOG2137|consen 504 VMAENVLPLLIPLS 517 (700)
T ss_pred eehhhhhhhhhhhh
Confidence 12345666665543
No 203
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.36 E-value=2.5 Score=47.63 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=97.2
Q ss_pred hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1616 ~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
.++.++..+..+++++++.-|-.+...++.+++..|.+. ....+..++..++..++...+..++.++..++...+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456688888899999999999999999999999876653 3566777788888877777788888888888765442
Q ss_pred h----------hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhc
Q 000051 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2612)
Q Consensus 1692 ~----------~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L 1746 (2612)
. .+..+++.+++..++ ....+.++.++..+....+..|.||..++-..++..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 1 223344444444443 5778889999999999999999999888776666554
No 204
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.28 E-value=9.5 Score=48.92 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH----hhChh
Q 000051 1883 MPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKS 1957 (2612)
Q Consensus 1883 l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~----~~~~~ 1957 (2612)
.+.+.+.+...+. +.++........+++..+..++...-+.++..+.+++.++.+.+|..-+..++.++. .....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 3344444554454 678888999999999888888667778999999999999999999999999999876 22222
Q ss_pred hHHHhHhHHHHHHHHHhcCCcH
Q 000051 1958 QLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1958 ~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
...++++.++..+.+....+.+
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~ 121 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQ 121 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 3344455555555555555533
No 205
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.92 E-value=5.8 Score=46.53 Aligned_cols=149 Identities=18% Similarity=0.283 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhccc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 1413 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i-~~~~~~~~R~~Al~al~~L~~~~~~~ 1413 (2612)
..-+++.....|.+..+...|.+|..+|. ..-|..++.++ ++.++.+.+ ++-+|-..-...++.+..+...-.-.
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlhQLvPY-Fi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLR---NDSGLHQLVPY-FIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 34456666666665555566777766643 23344444332 333443333 22223333334455555555444456
Q ss_pred chhhHHHHHHHHHHHc-----C-CCCH----HHHHHHHHHHHHHHHhhcHHh--H-HhHHHHHHhh-hc-CCChhhHHHH
Q 000051 1414 FEPYVIQMLPLLLVAF-----S-DQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKG-LE-DKAWRTKQSS 1478 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l-----~-D~~~----~VR~aa~~al~~i~~~l~~~~--v-~~ilp~Ll~~-L~-~~~w~~r~~a 1478 (2612)
.+||+.+++|.++.|+ + +++. .+|+-|+..++.+++.++... . ..+.-.+++. |+ +....+..||
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7899999999999875 2 2222 389999999999988876542 1 3333444443 33 2345778888
Q ss_pred HHHHHHHHh
Q 000051 1479 VQLLGAMAY 1487 (2612)
Q Consensus 1479 ~~~L~~ia~ 1487 (2612)
+..+..+..
T Consensus 351 lkgls~l~k 359 (450)
T COG5095 351 LKGLSILSK 359 (450)
T ss_pred hhhhhhhch
Confidence 888876654
No 206
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.57 E-value=34 Score=49.06 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcCCcchhhhhHHHHHHHHhccc
Q 000051 2515 VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 2588 (2612)
Q Consensus 2515 ~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~ 2588 (2612)
..+|..+++.|.+.|..|-..++-+|..+.-++|..= .+| ...+|.+.+.+..|+--+-.-+-.|+.-++..+
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ-q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ-QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH-HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 3578888888888888888888888888877777542 222 446888888888887777666667777776655
No 207
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.49 E-value=12 Score=50.11 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=113.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
+++.+...+...+....+.--..-+..+.+....+.+.. .+++.|....++. +...++.++..+..+++.+. .+.
T Consensus 350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~-~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~ 424 (700)
T KOG2137|consen 350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKE-KILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPF 424 (700)
T ss_pred hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHH-HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHH
Confidence 444444444433333334444444555666666666643 7899999988887 78999999999999999887 233
Q ss_pred HH-HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1418 VI-QMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1418 v~-~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
+. .++|.+.. ++...+..|+..+..|+..++..+....+-..++.+++.....+.....+.+.+....+...+.....
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev 504 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV 504 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee
Confidence 33 56776655 45677889999999999999998888888777777888887788888888777777666654442111
Q ss_pred hhchhHHHHhhhh
Q 000051 1496 CLPKIVPKLTEVL 1508 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L 1508 (2612)
....++|.+..+.
T Consensus 505 ~~~~VlPlli~ls 517 (700)
T KOG2137|consen 505 MAENVLPLLIPLS 517 (700)
T ss_pred ehhhhhhhhhhhh
Confidence 2244555555444
No 208
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=84 Score=42.36 Aligned_cols=292 Identities=12% Similarity=0.087 Sum_probs=167.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc-cHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh--cccchhccH
Q 000051 2075 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE-GVESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 2151 (2612)
Q Consensus 2075 il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~-~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~--~~~~~~~~~ 2151 (2612)
|++.++..++++..-+|..+++.+..+-....+. -+-+..+...+.+++.+..++..|+.++..|..+ ....++.++
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 5566666777888888888888888874333332 3566777777888888899999999999988654 446688999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhH
Q 000051 2152 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLL 2231 (2612)
Q Consensus 2152 ~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~il 2231 (2612)
|.+++.|+.+-++-+.++.....+++-.-....-..+.+.+...+.+.+-..
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlki---------------------------- 592 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKI---------------------------- 592 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHH----------------------------
Confidence 9999999999888777776655544433222222223333444433322111
Q ss_pred HHHHHHHhcC-----CHHHHHHHHHH----HHHHHHhcCh-hhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2232 PIFLQGLISG-----SAELREQAALG----LGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2232 p~l~~~L~~~-----~~~~r~~aa~~----L~~li~~~~~-~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
....++++ ..+.++.++.+ +..++-.... ..+-.+..+..-|.+..+-+..-.+.-..++..+....-
T Consensus 593 --aq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf 670 (970)
T COG5656 593 --AQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF 670 (970)
T ss_pred --HHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence 11111111 11223333222 2233322210 112233444445555544332234455555555543221
Q ss_pred hcCCCccCchHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCC-------hhHHHHHHHHh-hhcCCH--HHHHHHH
Q 000051 2302 KGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTR-------VDPLVGDLLSS-LQVSDA--GIREAIL 2370 (2612)
Q Consensus 2302 ~~~~~l~p~lpqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~-------~~~~l~~Ll~~-l~~~d~--~vr~~~l 2370 (2612)
.. ..+.|..+.+...+.+++.++. -..-..++-++.+++.++.. .-..+-++.+. +.+.+. .=+..++
T Consensus 671 ~s-keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc 749 (970)
T COG5656 671 MS-KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC 749 (970)
T ss_pred HH-HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence 11 1234667788888888888874 36667788889998776521 12223333332 333332 2355567
Q ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHH
Q 000051 2371 TALKGVLKHAGKSVSSAVKIRVYSVLK 2397 (2612)
Q Consensus 2371 ~AL~~vi~~~g~~~~~~~~~~i~~~L~ 2397 (2612)
+-+..++-..++.+...|++...+...
T Consensus 750 ~i~e~l~Ln~rd~Ll~qy~plfi~vag 776 (970)
T COG5656 750 RIIESLILNIRDELLSQYLPLFISVAG 776 (970)
T ss_pred HHHHHHHHHccchhHHhhhHHHHHHHh
Confidence 777777777888777778887766665
No 209
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.97 E-value=25 Score=48.89 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=79.5
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCc--------cCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHH
Q 000051 2285 PWQVKSAILSTLSIIIRKGGIAL--------KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLS 2356 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l--------~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~ 2356 (2612)
...++..++.+++.+..+.-..- ..+++.+...+-++.++.++..+..+.++||++.. +..-+.+...+.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~~i~~l~~~l~ 487 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PSSIKVLEPYLE 487 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hhHHHHHHHhcC
Confidence 45688889999998887543221 23555566666666666788889999999998733 333333333333
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhCChhH
Q 000051 2357 SLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ 2426 (2612)
Q Consensus 2357 ~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~ 2426 (2612)
+-......+|..+++||+.+....+. .+.+.+...+.+ .+.++|.+|.-.| ....|+..
T Consensus 488 ~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P~~~ 548 (574)
T smart00638 488 GAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL---METKPSVA 548 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHHHHHHH---HhcCCCHH
Confidence 22233478999999999977654322 233344444444 3567888776543 34446543
No 210
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.47 E-value=1.6 Score=48.54 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=86.0
Q ss_pred chhhHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHH-hHHhHHHHHHhhhcCCChhh
Q 000051 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~------------------D~~~~VR~aa~~al~~i~~~l~~~-~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
+.|++..++|.++.-.. |..-++|++|-+++..+.+..... .+..++..+..+|.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888887443 234579999999999998854433 567889999999988 8999
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc----CC--------CHHHHHHHHHHHHHHHhhc
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT----DT--------HPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~----D~--------~~~VR~aA~~aL~~l~~~~ 1530 (2612)
|.-+...+..++..+|..+...+..+++.+-..|+ +. +.+..+++.+++..+...+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998888774 21 2344455666666664444
No 211
>PF05536 Neurochondrin: Neurochondrin
Probab=89.46 E-value=99 Score=42.18 Aligned_cols=190 Identities=20% Similarity=0.237 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCC
Q 000051 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~ 1471 (2612)
...+..|+-.+.+++....-.-.+-+..-+|.++..+..... .+-+.|.+++..++. ++.|-+
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~~-------------- 134 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGAK-------------- 134 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhHH--------------
Confidence 345556777677766522112245566778888888866555 555555555555431 111111
Q ss_pred hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCCh
Q 000051 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551 (2612)
Q Consensus 1472 w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~ 1551 (2612)
.+.. .+.++.+.+.+.+ ++...+.|...|..+....+...+..
T Consensus 135 --------------------aLl~--~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~-------------- 177 (543)
T PF05536_consen 135 --------------------ALLE--SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE-------------- 177 (543)
T ss_pred --------------------HHHh--cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh--------------
Confidence 1110 2344555555555 66777888888877765443110000
Q ss_pred hHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-C---CcchhhHhhhHHHHHHH
Q 000051 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYIGLLLPEVKKV 1627 (2612)
Q Consensus 1552 ~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-~---~~l~~~l~~ll~~L~~~ 1627 (2612)
....+..+++.+.+.+.......+-..+..++.+....+. + ..-....+.+..++...
T Consensus 178 ------------------~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 178 ------------------DSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred ------------------hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 0001112223333333333334555566666666654310 0 11234566778888888
Q ss_pred hcC-CCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1628 LVD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1628 L~d-~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
+.+ ..+.-|..+....+.+.+..|.+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 875 47888999999999999998865
No 212
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.44 E-value=5 Score=51.01 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=80.3
Q ss_pred cCchhhHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC---------CCCHhH
Q 000051 2225 KALQPLLPIFLQGLISG-------SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQV 2288 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~~-------~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~---------~~~~~v 2288 (2612)
.|+.+++|.|++-+..+ +...-...+.++..++.+-. =.+.||+-+++++++..+-. ...|.+
T Consensus 206 ~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~L 284 (343)
T cd08050 206 PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWAL 284 (343)
T ss_pred CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHH
Confidence 34556666655544332 23334455666677776654 46889999998888865521 246899
Q ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCC--HHHHHHHHHHHHHH
Q 000051 2289 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST--RTVRSSAALALGKL 2340 (2612)
Q Consensus 2289 k~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~--~~vR~~Aa~aLg~L 2340 (2612)
|..|...|+.++++.+.......|.+..++.+.|.|+. ....--|..+|+.+
T Consensus 285 Rd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 285 RDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999999999998877778999999999999973 34455555555544
No 213
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.26 E-value=1.4e+02 Score=44.09 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhcccccc
Q 000051 2514 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2514 l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
+.++....+....+++...|..|+..+..+...-++.+.+++++++|.|-+.+.|.+..|...+-. ++..++=.=|+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~-li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK-LIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhch
Confidence 677888888888899999999999999999999999999999999999999999999999887776 44444433343
No 214
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.10 E-value=13 Score=47.97 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC---------CCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHH
Q 000051 2247 EQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 2317 (2612)
Q Consensus 2247 ~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~---------~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~ 2317 (2612)
...+..+..+.++-. -.+.||+-++++.++..+-. ...|.+|-.|..++..++...+......-+.+.++
T Consensus 265 ~~lm~m~rSLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~t 343 (576)
T KOG2549|consen 265 IYLMRMVRSLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRT 343 (576)
T ss_pred HHHHHHHHHHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455555554433 45788888888776654321 13688999999999999999888777777889999
Q ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHh------ccCChhHHHHHHHHhhhcC----------CHHHHHHHHHHHHHHH
Q 000051 2318 FIKCLQDS--TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQVS----------DAGIREAILTALKGVL 2377 (2612)
Q Consensus 2318 ~~k~L~d~--~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~Ll~~l~~~----------d~~vr~~~l~AL~~vi 2377 (2612)
+.|.+.|+ ......-|..+|..|.. +-|++..+...+-..+... ...++..++++...++
T Consensus 344 l~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii 421 (576)
T KOG2549|consen 344 LSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPII 421 (576)
T ss_pred HHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence 99999997 56777777777776622 2467776665554443221 1344555555555543
No 215
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.99 E-value=40 Score=45.91 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=69.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc--ccHHHH--HHHHHhhcCCCChhHHHHHHHHHHHHHHhccc---c
Q 000051 2074 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE--EGVESL--VSELLKGVGDNQASIRRSSAYLIGYFYKNSKL---Y 2146 (2612)
Q Consensus 2074 ~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~--~~l~~l--l~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~---~ 2146 (2612)
.-+|..+.+|...++.++..+...+..+...-.. ..+..+ ++.|+..+.+.+..++..||.++-++.-.... .
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3455666666677777777777666666532111 112222 66788888999999999999999998543221 1
Q ss_pred hhccHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000051 2147 LVDEAPNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2147 ~~~~~~~il~~L~~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+.--..+=++.++.++.. .|.+|++.....|..+...
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 221112234555666653 6788998888888887654
No 216
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=88.96 E-value=27 Score=47.37 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=99.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-------~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
++..-..+++..++...-+++.-++..+.-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+....
T Consensus 519 vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 519 VVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 4443334444555788888888888888865553 445543 45799999999888888889999999987765
Q ss_pred cHHhH--HhHHHHHHhhhcCC------ChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcC-CCHHHHHHHHH
Q 000051 1452 SAQGV--KLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQT 1521 (2612)
Q Consensus 1452 ~~~~v--~~ilp~Ll~~L~~~------~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~ 1521 (2612)
....+ +..+|.|++.|-+. .|.+-..+|..|..|....+..-...+ .+-+++|..+... .++++-++|..
T Consensus 598 rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~ 677 (717)
T KOG1048|consen 598 RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASS 677 (717)
T ss_pred hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHH
Confidence 55433 78889999887542 478888888888888754433322222 1234444444433 35677778887
Q ss_pred HHHHHHh
Q 000051 1522 ALQQVGS 1528 (2612)
Q Consensus 1522 aL~~l~~ 1528 (2612)
-|..+..
T Consensus 678 vL~~lW~ 684 (717)
T KOG1048|consen 678 VLDVLWQ 684 (717)
T ss_pred HHHHHHH
Confidence 7776654
No 217
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.95 E-value=90 Score=41.06 Aligned_cols=264 Identities=15% Similarity=0.228 Sum_probs=140.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----Cch-------hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFP-------DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~-------~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~ 1688 (2612)
++..+...++ +...-+.|..++..+......- .+. .+++.....-...++...+. +++.+...
T Consensus 200 Li~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~----a~~RIFte 273 (559)
T KOG2081|consen 200 LITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNE----AICRIFTE 273 (559)
T ss_pred HHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHH----HHHHHHHH
Confidence 5555666666 3567778888888776643211 121 22333333322223232222 23333333
Q ss_pred hChhhH----------HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc--------cchhhhHHhHHHHHHhhcCCCC
Q 000051 1689 LGTVYF----------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--------VQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1689 ~g~~~l----------~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g--------~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
+|.... -.++..++-...+++.++-+..+..+-.+.+.+- .-|.||..+++..+...++-+.
T Consensus 274 l~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 274 LGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred HHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 333221 2233344445566677777777777766654332 2356666666665555444322
Q ss_pred hhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHH
Q 000051 1751 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1830 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~ 1830 (2612)
+ ...+.++ .++....|....+++.+..+-+
T Consensus 354 -~--------------------~~~l~Ee-----~~~f~~fR~~v~dvl~Dv~~ii------------------------ 383 (559)
T KOG2081|consen 354 -D--------------------QFDLPEE-----ESEFFEFRLKVGDVLKDVAFII------------------------ 383 (559)
T ss_pred -c--------------------cccCccc-----hhHHHHHHHHHHHHHHHHHHHh------------------------
Confidence 0 0000000 1222335666666666654432
Q ss_pred HHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1831 RAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2612)
Q Consensus 1831 ~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~a 1908 (2612)
|. ++.++.+|..+ ...+|+.-++++-.+..++.+.+..=.+++|.+++.+.+.=. ....|..+...
T Consensus 384 -------gs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q~~~~~ts~ll 451 (559)
T KOG2081|consen 384 -------GS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--QAPLRYTSILL 451 (559)
T ss_pred -------Cc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--chhHHHHHHHH
Confidence 21 12344444433 356899999999999999998876656778888777654322 22388888888
Q ss_pred HHHHHHHhch--hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000051 1909 LGELVRKLGE--RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2612)
Q Consensus 1909 L~~lv~~~~~--~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~ 1953 (2612)
+|++.+.+.. ..+..++..+..++.... .-..+..++..++..
T Consensus 452 ~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~ 496 (559)
T KOG2081|consen 452 LGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSA 496 (559)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHH
Confidence 8888776543 245555566666655443 334444555555443
No 218
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.83 E-value=1e+02 Score=41.44 Aligned_cols=264 Identities=15% Similarity=0.097 Sum_probs=130.7
Q ss_pred HhhHHHHHHHhc-CCCCHHHHHHHHHHHHHhhhh--cccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2072 LGTILPALLSAM-GDDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2072 l~~il~~Ll~~L-~~~~~~vr~~a~~al~~l~~~--~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+..++..++... ...++..-+..+..++.++.. ++.+.+.+++..|....... .....+-.++.++++.
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S------ 245 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKS------ 245 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcC------
Confidence 334444444443 333344446677788888773 34577888988888876543 5555677777777752
Q ss_pred ccHHHHHHHHHHHhcCC------ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCC
Q 000051 2149 DEAPNMISTLIVLLSDS------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC 2222 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~------d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~ 2222 (2612)
......+..|+..+.++ +..+...|...++.++-..+++.+ +.
T Consensus 246 ~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~-----------------------------~~-- 294 (464)
T PF11864_consen 246 HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGY-----------------------------PS-- 294 (464)
T ss_pred ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCc-----------------------------ce--
Confidence 23456777777777322 223334444444443332221111 11
Q ss_pred CCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcChhhhhhchhhhhHHHHHHhcC---CCC--------HhHHH
Q 000051 2223 LPKALQPLLPIFLQGLISGSAELREQAALGLGELI-EVTSEQSLKEFVIPITGPLIRIIGD---RFP--------WQVKS 2290 (2612)
Q Consensus 2223 ~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li-~~~~~~~l~p~v~~i~~pLi~~l~~---~~~--------~~vk~ 2290 (2612)
++-....++|.|...+..+++-+-......+..++ ...+.....+....+...+.++... ... ..++.
T Consensus 295 l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (464)
T PF11864_consen 295 LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSS 374 (464)
T ss_pred ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 11122237788888777665555445555566666 4443222333333333333322221 101 12332
Q ss_pred HHHH---HHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhh--cCCHH
Q 000051 2291 AILS---TLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQ--VSDAG 2364 (2612)
Q Consensus 2291 ~al~---~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~~l~--~~d~~ 2364 (2612)
..-. .+..+... ..+..-.+.+...|.++...-+++........-.... -.++.+-.-+..|++... +.+..
T Consensus 375 ~~~~l~~~ie~L~~~--~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~ 452 (464)
T PF11864_consen 375 NLHSLLSSIESLYEQ--HDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSE 452 (464)
T ss_pred HHHHHHHHHHHHHhC--CCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCch
Confidence 2222 22333332 1222223566777777655543333322221111111 123445556667777664 23478
Q ss_pred HHHHHHHHHHHH
Q 000051 2365 IREAILTALKGV 2376 (2612)
Q Consensus 2365 vr~~~l~AL~~v 2376 (2612)
+|-.+++.+.++
T Consensus 453 vRi~aL~~l~e~ 464 (464)
T PF11864_consen 453 VRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHhhC
Confidence 888888887653
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.61 E-value=2.2 Score=42.68 Aligned_cols=81 Identities=21% Similarity=0.317 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccH
Q 000051 2113 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 2192 (2612)
Q Consensus 2113 ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~l 2192 (2612)
.+...+..+.|+.+.+|..++..|..+++... ......+.++..++..+.|+|+-|--+|..+|..++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 45566677789999999999999999987654 23345688899999999999999999999999999998887666555
Q ss_pred HH
Q 000051 2193 IK 2194 (2612)
Q Consensus 2193 v~ 2194 (2612)
+.
T Consensus 83 ~~ 84 (92)
T PF10363_consen 83 LD 84 (92)
T ss_pred HH
Confidence 54
No 220
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=6.3 Score=48.59 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCc
Q 000051 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF 2310 (2612)
Q Consensus 2231 lp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~ 2310 (2612)
++.++..+.+++.++|+.|+..||.++..-+...-.-.=......|+.++....+..+|..||.+++.+++.-+.....|
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 33444488899999999999999999987753221111122456788888865677899999999999998765444444
Q ss_pred hHH-HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000051 2311 LPQ-LQTTFIKCLQDS--TRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2311 lpq-L~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~ 2342 (2612)
++- =...+..+++++ +...+..|+.-++.+..
T Consensus 206 l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 431 144566788884 66777788888888754
No 221
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=14 Score=53.95 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh
Q 000051 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958 (2612)
Q Consensus 1883 l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~ 1958 (2612)
+..=+..+++.+..+++..|.-|...+++++.....+ ++|....+..+...|.+..||..+-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444666777788899999999999999999776544 345555556677789999999999999998887765 56
Q ss_pred HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000051 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2612)
Q Consensus 1959 l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~ 1991 (2612)
+.+|++.++|...-...|.+..|-.+|...|..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999999999998888877666543
No 222
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=87.87 E-value=4.5 Score=41.90 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=64.2
Q ss_pred cHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000051 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~---~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2612)
.++..+.+.+.+ +++...|..++.+++.+.+..+..+.++.+++.-.+...+..+ .+|+.|..+...+...+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 456666666666 5578888999999999999666555555556655555555555 89999999999999999988
Q ss_pred hHHhHHHHHHh
Q 000051 1455 GVKLVLPSLLK 1465 (2612)
Q Consensus 1455 ~v~~ilp~Ll~ 1465 (2612)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 223
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=87.84 E-value=83 Score=39.29 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=135.9
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHh----HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH----ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~----llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~ 1732 (2612)
.+...|.++|...-+.++-..+......+....|.+.+.. ..|.+...+....-.||...+..+...-..+|..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 3455677778776677888889999999999999986633 345666666677788999999999988888899999
Q ss_pred hhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000051 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2612)
Q Consensus 1733 p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~ 1812 (2612)
|.+..++..++.++.|+..++-+.+...+..+...++.+. +...+...+- .+-..|..++..+..-+.. ...
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~---~~~- 205 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRLPK---FQN- 205 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhCCc---ccc-
Confidence 9999999999999999998888888888888877776652 3333332222 2345788777766543321 100
Q ss_pred ccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1813 ~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
++.....+ .....++. ...-++.+++.++.|.+.-|++.+++.+-....
T Consensus 206 -------~~~~~~~~----~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 206 -------DELSLSSE----EQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred -------cccccchH----HHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 00000000 11222332 123467788888999999999999998765444
No 224
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.67 E-value=4.4 Score=40.56 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=65.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHH
Q 000051 2350 LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD 2429 (2612)
Q Consensus 2350 ~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~ 2429 (2612)
.+.+.+..+.++...+|...+.-|+.++.... ......+.++.++...+.|+|.-+--+|.++++.|+...|+..+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 34566666777777788888888888887654 3345678999999999999999999999999999999999765555
Q ss_pred HHHHHH
Q 000051 2430 LLQELL 2435 (2612)
Q Consensus 2430 ~l~~ll 2435 (2612)
+++.+.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 555443
No 225
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=1.9e+02 Score=42.79 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHH
Q 000051 2110 VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 2175 (2612)
Q Consensus 2110 l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~ 2175 (2612)
+.+++..++...+++++..|..|+..+..+....+..+...+++.+|.|-++++|.+.+|-..+..
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888665554
No 226
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.04 E-value=10 Score=47.11 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=108.2
Q ss_pred HHHHHHHH-hcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCc----c--CchHHHHHHHHHHhc
Q 000051 2251 LGLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL----K--PFLPQLQTTFIKCLQ 2323 (2612)
Q Consensus 2251 ~~L~~li~-~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l----~--p~lpqL~~~~~k~L~ 2323 (2612)
.++.-++. ..+...+..+..-+++|++.++.|. +..+|...+.+|..++.+++... + ...+.+.+.+..++.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 34444444 6665678888899999999999886 88999999999999999876543 1 234556777777877
Q ss_pred --------CCCHHHHHHHHHHHHHHHhc------cC---ChhHHHHH-HHHhhh-cC---CHHHHHHHHHHHHHHHHhcC
Q 000051 2324 --------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAG 2381 (2612)
Q Consensus 2324 --------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~~l~~-Ll~~l~-~~---d~~vr~~~l~AL~~vi~~~g 2381 (2612)
+++..+=..|..||-.|... .+ ..+.++.+ +++.+. .. ...++...++.+..++...|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45666767778888887442 12 24445554 555543 22 37888999999999999988
Q ss_pred CCcChHHHHHHHHHHHHhhcCC
Q 000051 2382 KSVSSAVKIRVYSVLKDLVYHD 2403 (2612)
Q Consensus 2382 ~~~~~~~~~~i~~~L~~~l~~~ 2403 (2612)
... ..+.+.++..+.+.+.++
T Consensus 257 i~~-~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 257 ISS-VKHLQRIIPVLSQILENP 277 (282)
T ss_pred cHH-HHHHHHHHHHHHHHhcCC
Confidence 755 678888888888777664
No 227
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=1e+02 Score=39.09 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhHHhHHHHHHhhhcCCChhh
Q 000051 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1398 ~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
.|+..+-.+++...-...-.-.+++..+.+++.-.+...--....-++.+.-.... ..-..++..|+..+.......
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 56666666776554322223346778888887655544444333333332111111 122456666777777777788
Q ss_pred HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCC
Q 000051 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~ 1511 (2612)
+...+.++..+.+...-.-...-..++|.+..++++.
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 8889999988887543332222356788888888654
No 228
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=86.35 E-value=1.6e+02 Score=41.04 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=67.3
Q ss_pred HHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhhee-ecC-CchHHHHHH--------HHHHHh-cCCCCCC
Q 000051 1062 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA-VHD-PEKSVAEAA--------EDIWDR-YGYDFGT 1130 (2612)
Q Consensus 1062 ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~la--------~~~w~~-~~~~~~~ 1130 (2612)
.++..+|+|+..++.||++|.+... .-.|...+.-. ... .+-..|-.| .++|++ ++....+
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe~--------q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWEK--------QHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhhc--------cccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 5688899999999999999987531 12233333221 111 222233332 368986 4433333
Q ss_pred C----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHH
Q 000051 1131 D----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLY 1176 (2612)
Q Consensus 1131 ~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~ 1176 (2612)
+ + ..++..+-+.+....-..|+|++.++. .+|+.||+++..|.+.-
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~L 132 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLL 132 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhh
Confidence 2 3 567776666666666688888888876 57888888877776643
No 229
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=85.74 E-value=1.9e+02 Score=41.37 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred chhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000051 2468 PLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 2547 (2612)
Q Consensus 2468 ~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~ 2547 (2612)
.....+.+.+......+++......+.++..+.....-. +. + ..+-+.+-....|+.-..++.....++..++...
T Consensus 437 ~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~ 512 (727)
T PF12726_consen 437 RISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFD 512 (727)
T ss_pred hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777888888888888888765543211 10 0 1112222223333333456677778888999888
Q ss_pred chhhhhhHh--HHHHHHHhhhcCCcchhhhhHHHHHHHHhc
Q 000051 2548 PSAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQ 2586 (2612)
Q Consensus 2548 ~~~v~~~l~--~l~p~l~~~~~~~~~~vk~aae~~~~~~~~ 2586 (2612)
|+.+...+. ...-++..++=.++..+.+||..-+-.++.
T Consensus 513 ~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 513 PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 888777775 567777888878888888888755555554
No 230
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.70 E-value=43 Score=43.99 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=137.2
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCC----hh-HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcch---hhhhHHHH
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKD----LP-VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN---VSLLFPIF 1259 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~----~~-~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~---~~~Llp~~ 1259 (2612)
+..|++-..+...|..+....+.+. +. .++.-|+ ..+.++++.-|......+..+.+.+...+ .+.+-..|
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll-~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~ 179 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLL-ELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF 179 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHH-HTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4578887777777776665443322 22 3444453 56778899999999888888877664432 34455556
Q ss_pred HHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCCCCH-HHHHHHHhhhHHhHhhhcchhH
Q 000051 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSE-AVQRAVSSCLSPLMQSMQDEAP 1336 (2612)
Q Consensus 1260 ~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~~~~-~Vq~~~~~~L~~lv~~~~~~~~ 1336 (2612)
.++........ .+ .-...++|.+...+... +.+..-+...++...+.+.- ........|+..++.....-..
T Consensus 180 ~~fi~e~~~~~----gI-~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~ 254 (409)
T PF01603_consen 180 YRFIYETERHN----GI-AELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE 254 (409)
T ss_dssp HHHHHTTS--S----TH-HHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH
T ss_pred HHHhcCccccc----CH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH
Confidence 55555321110 01 11223444443322211 11122233445555555542 3345566677666655444444
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1337 ~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
..+..++..-...+ ......-...+..++..+++..+.. ..++..+..++.+. +..+-+.|+..+..= .+-..+
T Consensus 255 ~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~--~~~~li 330 (409)
T PF01603_consen 255 PVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE--YFLSLI 330 (409)
T ss_dssp HHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH--HHHHHH
T ss_pred HHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH--HHHHHH
Confidence 45555554433332 3444556666777777776555431 25777788888887 788888777654321 111223
Q ss_pred hhhHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Q 000051 1415 EPYVIQMLPLLLVAFSDQ-----VVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1415 ~~~v~~ilp~ll~~l~D~-----~~~VR~aa~~al~~i~~ 1449 (2612)
..+...++|.++..+... +..||..+..+++.+++
T Consensus 331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445556777777765431 56789888888888765
No 231
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.65 E-value=19 Score=47.13 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccC
Q 000051 2232 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKP 2309 (2612)
Q Consensus 2232 p~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p 2309 (2612)
..++.-+-.++......-..-+..++...++..+.+....+..-+.+.+... +..|-..|+..+. .+..-+ ..
T Consensus 258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li----~~ 332 (409)
T PF01603_consen 258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI----SQ 332 (409)
T ss_dssp HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH----HC
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH----Hh
Confidence 3333333334444444556778888888887888877777777777777654 6777777777764 233322 23
Q ss_pred chHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhccC
Q 000051 2310 FLPQLQTTFIKCLQD-----STRTVRSSAALALGKLSALST 2345 (2612)
Q Consensus 2310 ~lpqL~~~~~k~L~d-----~~~~vR~~Aa~aLg~L~~~~~ 2345 (2612)
+...+.+.+...+.. -+..||..|..++..+..+.+
T Consensus 333 ~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 333 NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 334455555554433 289999999999999977653
No 232
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.34 E-value=1.8e+02 Score=40.80 Aligned_cols=276 Identities=18% Similarity=0.213 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccccc--------HHHHHHHHHhhcCCC
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG--------VESLVSELLKGVGDN 2124 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~--------l~~ll~~Ll~~l~~~ 2124 (2612)
...+++.+++..|..|.+.+-..+=.++..+.++++.++..+..|+..++..++-.. .+-++..+-..++..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 346788888889999999887777777778888999999999999988887664322 233344444444422
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcccccc-HHHHHHHHHHhh
Q 000051 2125 QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTS 2203 (2612)
Q Consensus 2125 ~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~-lv~~l~~~l~~~ 2203 (2612)
...- .+-..+..++++++....+++.++++.++..++.....-...-..-+-.+++...+.+... ++....+.....
T Consensus 648 ~~s~--~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~ 725 (1014)
T KOG4524|consen 648 GMSP--RVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ 725 (1014)
T ss_pred CCCc--hhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 2111 2334455667777777788888888888888864432211222223333333332222111 111111111110
Q ss_pred hhhhhhhhcCCcccccCCCCCcCc-----------hhhHHHHHH-----HHhcC----CHHHHHHHHHHHHHHHHhc-Ch
Q 000051 2204 RDKERRKKKGGPILIPGFCLPKAL-----------QPLLPIFLQ-----GLISG----SAELREQAALGLGELIEVT-SE 2262 (2612)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~p~~l-----------~~ilp~l~~-----~L~~~----~~~~r~~aa~~L~~li~~~-~~ 2262 (2612)
... ... . +|..+ ..+.|.+.+ ++..+ .++.+.. .--++=-..+ ++
T Consensus 726 ~~k-----~l~--e-----~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~--e~edens~~~d~e 791 (1014)
T KOG4524|consen 726 STK-----VLN--E-----LPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREE--EVEDENSEYTDTE 791 (1014)
T ss_pred HHH-----Hhh--c-----chhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCC--CccccccCCCCCC
Confidence 000 000 0 11111 112222211 11111 0110000 0000000000 00
Q ss_pred hhhhh---chhhhhHHHHHHhcCCCCHhHHHHHHHHHH---HHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 2263 QSLKE---FVIPITGPLIRIIGDRFPWQVKSAILSTLS---IIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALA 2336 (2612)
Q Consensus 2263 ~~l~p---~v~~i~~pLi~~l~~~~~~~vk~~al~~L~---~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~a 2336 (2612)
..+.+ .+..|++--++.+.+. +-.+|..+|.+|. .++...+..+-|.+.+.++.++.++.+.++-+-..|..|
T Consensus 792 p~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~ 870 (1014)
T KOG4524|consen 792 PILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSC 870 (1014)
T ss_pred CCCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHH
Confidence 01111 2345566667777764 6678889998886 455667778888889999999999999999999999999
Q ss_pred HHHHHhccC
Q 000051 2337 LGKLSALST 2345 (2612)
Q Consensus 2337 Lg~L~~~~~ 2345 (2612)
+-.+....+
T Consensus 871 i~~m~~~sg 879 (1014)
T KOG4524|consen 871 IEQMGKYSG 879 (1014)
T ss_pred HHHHHHHhh
Confidence 999866543
No 233
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=1.8 Score=48.42 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHh---c
Q 000051 2227 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK---G 2303 (2612)
Q Consensus 2227 l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~---~ 2303 (2612)
....+|.|.+||...+-.-|-.|-.++.+++...| +.+-|.+++++.||-+.+..+ +.++....|.+|..|... +
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccc
Confidence 34689999999988777778888999999998888 788899999999999988876 788999999999887654 5
Q ss_pred CCCccCchHHHHHHH
Q 000051 2304 GIALKPFLPQLQTTF 2318 (2612)
Q Consensus 2304 ~~~l~p~lpqL~~~~ 2318 (2612)
|..+.||..||.+.+
T Consensus 190 G~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVL 204 (262)
T ss_pred chhhhhHHHHhhhhh
Confidence 688889999998865
No 234
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.45 E-value=18 Score=44.99 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=97.9
Q ss_pred CCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC---------chhhHHHHHHHhc---c----CCCH
Q 000051 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK---S----DNSN 1672 (2612)
Q Consensus 1609 ~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~---------~~~ll~~L~~~L~---~----~~~~ 1672 (2612)
+...+..+.+-++|.+..+++|..+.+|..+..++..+...++... .+-+-+.+...+. + +++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3456788899999999999999999999999999999999776543 2223333444443 1 2222
Q ss_pred HHHHHHHHHHHHHHHHhC---h----hhHHhHhHH-HHHhccC----CChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g---~----~~l~~llp~-l~~~~~~----~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
..-..+..++-.++.... . ..+.+++-. ++..... +.+.++...+..+..+...+|-....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 233344455555544321 1 123334433 5555433 248899999999999999999999999999999
Q ss_pred HHHhhcCCCC
Q 000051 1741 AILDGLADEN 1750 (2612)
Q Consensus 1741 ~ll~~L~d~~ 1750 (2612)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
No 235
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.26 E-value=1.1e+02 Score=37.41 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=88.7
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2394 SVLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2394 ~~L~~~l~~-~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+.|.++++| .+.++|..+-+|+..|-...+.+.... .+...+..+.
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs---------------------------------~IV~~gg~~~ 332 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS---------------------------------TIVEKGGLDK 332 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH---------------------------------HHHHhcChHH
Confidence 456667777 456788777777766655544432211 1112233444
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhh------HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV------VDILASVVSALHDDSSEVRRRALSALKSVAKA 2546 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l------~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~ 2546 (2612)
++.....+. ++|.+...+..++..+.... |++.... .-.++.+-..+. ...|.|.|+++++.++-+
T Consensus 333 ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~----pdhsa~~ie~G~a~~avqAmkahP~--~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 333 IITLALRHS--DDPLVIQEVMAIISILCLRS----PDHSAKAIEAGAADLAVQAMKAHPV--AAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHcC--CChHHHHHHHHHHHHHHhcC----cchHHHHHhcchHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHh
Confidence 555444433 45666666666666655442 2222111 112333333322 346899999999999998
Q ss_pred CchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHH
Q 000051 2547 NPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAV 2582 (2612)
Q Consensus 2547 ~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~ 2582 (2612)
..+.-.++++.=+..|...-+..+..++.+|-.|+-
T Consensus 405 s~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALR 440 (461)
T KOG4199|consen 405 SAENRTILLANGIEKLIRTAKANHETCEAAAKAALR 440 (461)
T ss_pred hhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHH
Confidence 877667777777888888888888888877766653
No 236
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.47 E-value=11 Score=47.18 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=93.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhh---hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1888 ~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
..++..+++.+..+|..|...+.++........ +..+++.+.....|.+..+|.+....+-.++-...++.+.++..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 345566789999999999999999988744333 34555566667789999999999988888777777777889999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1965 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
-+++.+..++....+++|+-+...+..+...+++...
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 9999999999999999999999999988887765433
No 237
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=83.35 E-value=1.3e+02 Score=37.63 Aligned_cols=272 Identities=14% Similarity=0.096 Sum_probs=129.3
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHH
Q 000051 2115 SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIK 2194 (2612)
Q Consensus 2115 ~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~ 2194 (2612)
..+++..+. ....++.|...++.+++..+ ......+.+=+.+++|.|-.||..|..-|-.+++. +.++.+.+
T Consensus 28 ~~il~~~k~-~~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d 99 (460)
T KOG2213|consen 28 EGILKAVKG-TSKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVND 99 (460)
T ss_pred HHHHHHhhc-chHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHH
Confidence 344555544 34556778888999988654 33445566667788899999999888877777665 55666666
Q ss_pred HHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhh-hh
Q 000051 2195 VIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP-IT 2273 (2612)
Q Consensus 2195 ~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~-i~ 2273 (2612)
.+.|.++...-. -|......++..+|+-+..-|..=+-..+++.+..-+.. |+
T Consensus 100 ~l~qLLnk~sl~--------------------------~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv 153 (460)
T KOG2213|consen 100 VLVQLLNKASLT--------------------------GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIV 153 (460)
T ss_pred HHHHHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHH
Confidence 666666532111 011111113444444444333322222222222211111 11
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHH---HH--HhcCCCHHHHHHHHHHHHHHHhc---cC
Q 000051 2274 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTF---IK--CLQDSTRTVRSSAALALGKLSAL---ST 2345 (2612)
Q Consensus 2274 ~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~---~k--~L~d~~~~vR~~Aa~aLg~L~~~---~~ 2345 (2612)
.-.-..+.|- ..+--..-+..|+.+-.-.+..-..-+..|...+ .. .+.-++.+.-.+-..|+..-+-+ +.
T Consensus 154 ~eikkal~dV-tgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFarga 232 (460)
T KOG2213|consen 154 DEIKKALEDV-TGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGA 232 (460)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCC
Confidence 1111122221 1111112222222211100000000011111111 11 12222444444445554443211 11
Q ss_pred ChhHHHHHHHHhhh--cCC---HHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 000051 2346 RVDPLVGDLLSSLQ--VSD---AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIM 2418 (2612)
Q Consensus 2346 ~~~~~l~~Ll~~l~--~~d---~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~Lg~L 2418 (2612)
.-..++..+...+- ..| .+.+-..+++|+++.............++|+++|...|--+ .+.......+|+-.+
T Consensus 233 pSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~ 312 (460)
T KOG2213|consen 233 PSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYA 312 (460)
T ss_pred chhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHH
Confidence 22345555444431 122 56677799999999876533223467788888888877543 456666677887665
Q ss_pred Hhh
Q 000051 2419 SQC 2421 (2612)
Q Consensus 2419 ~~~ 2421 (2612)
...
T Consensus 313 ~h~ 315 (460)
T KOG2213|consen 313 LHH 315 (460)
T ss_pred HHH
Confidence 443
No 238
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=83.32 E-value=11 Score=38.98 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=62.8
Q ss_pred cHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH
Q 000051 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~---~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~ 1454 (2612)
.++..+.+.+.|.+ +...|..++.+++.+.+..|.....+.+++.-.+...+. .++.|..|..+...+...+++.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 45566666665543 667888999999999998776566666666666666665 4479999999999999999887
Q ss_pred hHHhHHHHHH
Q 000051 1455 GVKLVLPSLL 1464 (2612)
Q Consensus 1455 ~v~~ilp~Ll 1464 (2612)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 239
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.97 E-value=18 Score=37.60 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
..+...|..+.++++++++..|+. +.|++.-.|...++.+ +.|..++.+-..++...+.+.+.+++++++-.+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 367788999999999999944433 3566666666665544 88999999989999999998888888888777765
Q ss_pred Hh
Q 000051 1973 AL 1974 (2612)
Q Consensus 1973 ~L 1974 (2612)
..
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 43
No 240
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.90 E-value=5.6 Score=40.98 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=64.7
Q ss_pred ccCchHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHhc-cCChhHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHh
Q 000051 2307 LKPFLPQLQTTFIKCLQDST----RTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVS--DAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2307 l~p~lpqL~~~~~k~L~d~~----~~vR~~Aa~aLg~L~~~-~~~~~~~l~~Ll~~l~~~--d~~vr~~~l~AL~~vi~~ 2379 (2612)
+++++=.++..|-..+.|.+ -.-|.++..++|.++.. ++.+....|+++..++++ .++.|..+++++...+..
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 34444456666777777753 35699999999999774 567888889988888763 578999999999999988
Q ss_pred cCCCcChHHHHHHHHHHH
Q 000051 2380 AGKSVSSAVKIRVYSVLK 2397 (2612)
Q Consensus 2380 ~g~~~~~~~~~~i~~~L~ 2397 (2612)
....-..+..+.++..+.
T Consensus 85 L~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 85 LKEEELGPLLDQIFAAIL 102 (107)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 654322344444444443
No 241
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=82.65 E-value=1.4e+02 Score=37.45 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=99.3
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCC------------CchHHHHHHHHHHHHHH
Q 000051 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN------------DNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1736 ~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d------------~~w~vR~~a~~ll~~ll 1803 (2612)
...+..-+..+.|++-.||..|.+.+..+++. +.+..+.|.+.+.+.. .+..+|..++..+..=+
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl 136 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKL 136 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh
Confidence 34677778888899999999999888777653 3333344444333321 01122222222211111
Q ss_pred HHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1804 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1804 ~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
..+ ..+.+..+.-..++..+.+.+.|...+--...+..|+.+-.....+-..-+
T Consensus 137 ~~l--------------------------~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~l 190 (460)
T KOG2213|consen 137 ITL--------------------------KGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARL 190 (460)
T ss_pred hcc--------------------------cHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHH
Confidence 100 012222333345666777777888777777777777776543322212223
Q ss_pred HHHHHHHHHH-----hc--CCCHHHHHHHHH--HHHHHHHHhch-hhhhhHHHHHhhhcCCCC-hhHHHHHHHHHHHHHH
Q 000051 1884 PVLMNTLISS-----LA--SSSSERRQVAGR--ALGELVRKLGE-RVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1884 ~~ll~~L~~~-----L~--~~~~~~R~~A~~--aL~~lv~~~~~-~~l~~llp~L~~~L~d~~-~~vR~~a~~aL~~li~ 1952 (2612)
..+....-.. +. |.+...|...+. ++.-+.+..+. .++.++-..+...-.+.. .+.+...+.+|+++..
T Consensus 191 qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss 270 (460)
T KOG2213|consen 191 QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSS 270 (460)
T ss_pred HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCc
Confidence 3333222211 11 233334433221 11222222221 122222221111111222 3455677888888766
Q ss_pred hhChhhHHHhHhHHHHHHHHHh
Q 000051 1953 SAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1953 ~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
....+...+.++.++..+...+
T Consensus 271 ~ttaq~a~q~Lpsi~elLk~yM 292 (460)
T KOG2213|consen 271 YTTAQAARQMLPSIVELLKEYM 292 (460)
T ss_pred cchHHHHHHHHHHHHHHHHHhc
Confidence 5544444555666666666544
No 242
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=82.21 E-value=1.5e+02 Score=37.48 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCcc--ccCCchhHHHHHHHHh-hhccCChhHHHhHHHHHHHHHhhhhcc
Q 000051 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSA--ISMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLHQIQS 2506 (2612)
Q Consensus 2430 ~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~--~~~~~~~~~i~~~l~~-~~~~~~~~ir~~a~~alg~ll~~~~~~ 2506 (2612)
+++.+..|+.+++.......+++++.+.+....- +.+.++...+++++.+ .-.+++....-++..|+..+..-...+
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 6666778888887776666778888887654433 2356677777877765 556677888888888888876533222
Q ss_pred CCCCchh-hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcCCcch-hhhhHHHHHH
Q 000051 2507 GPANTTV-VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGSTP-VRLAAERCAV 2582 (2612)
Q Consensus 2507 ~~~~~~~-l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~~~~~-vk~aae~~~~ 2582 (2612)
. .. .......++..+...++-|-.--+-+++-+....+.+..+.. +.++..+..=.+.++.. |--.+-|-+.
T Consensus 396 a----~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 396 A----HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred h----hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence 1 11 122444455555555666655544444443333322222222 22333333333444444 4444444444
Q ss_pred HHhc
Q 000051 2583 HAFQ 2586 (2612)
Q Consensus 2583 ~~~~ 2586 (2612)
.+.+
T Consensus 472 ~lIk 475 (604)
T KOG4500|consen 472 GLIK 475 (604)
T ss_pred HHHH
Confidence 4443
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.21 E-value=1.2e+02 Score=36.43 Aligned_cols=137 Identities=17% Similarity=0.092 Sum_probs=81.4
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhcc-CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHH
Q 000051 2318 FIKCLQD-STRTVRSSAALALGKLSALS-TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSV 2395 (2612)
Q Consensus 2318 ~~k~L~d-~~~~vR~~Aa~aLg~L~~~~-~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~ 2395 (2612)
++..+.. .++.+.....++|+.++... ....+++..|.....++....+.-.+.-+..+........ ++...++..
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~ 82 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--PFLQPLLLL 82 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--HHHHHHHHH
Confidence 3333444 58999999999999998766 6666667777666666666666666777776665533222 222222222
Q ss_pred -HHH---hhcC--CCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHH
Q 000051 2396 -LKD---LVYH--DDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLA-SSPSWAARHGSVLVFATFL 2457 (2612)
Q Consensus 2396 -L~~---~l~~--~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~l 2457 (2612)
..+ ...+ .........+.++-.++...|+ ...++++.+-..+ ...+...+..++.++..++
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 111 1111 2344556667888999999887 6556665543333 4445444555555666665
No 244
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=82.02 E-value=1.3e+02 Score=36.67 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=94.9
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-----C-CcchhhHhhhHHHHHHHhcCCC-----HHHHHHHHH
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-----P-KDMIPYIGLLLPEVKKVLVDPI-----PEVRSVAAR 1641 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-----~-~~l~~~l~~ll~~L~~~L~d~~-----~~VR~~A~~ 1641 (2612)
....+.+.+.+|+..++ .-..+.+.+..+.....+ . ..+.-.+-..+|.+...+.++. +.++ .++.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHH
Confidence 34457788888887653 334456666666654222 1 1122223356777777777766 3444 5557
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHH-HHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA-AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~a-a~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
.|+.+++..|...+..++..+... .- ..+..- .+.+..+...+.++..-+++..++..+.++.+.+|...+.++
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~---~f--r~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKG---RF--RDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhc---CC--CCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 788888765555555554433221 11 011111 122333344444444445555666677777777888888887
Q ss_pred HHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
..+.....-. .|+..+++.++++.+..+.
T Consensus 213 ~~ll~~~d~~-~~~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 213 KVLLPHVDMR-SPHGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHhccccCC-CCcchHHHHHHHHHhCCcc
Confidence 7776655433 3466667777777776543
No 245
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.91 E-value=94 Score=40.12 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHhhC--ChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhh
Q 000051 2404 DDHVRVSAASILGIMSQCM--EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSL 2481 (2612)
Q Consensus 2404 ~~~vr~~aa~~Lg~L~~~~--~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~ 2481 (2612)
++.-|..|-+++-++.... +.+-=..+++.+..-.+.++...|..+..+++.+...+|+-+...+....+...+.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d-- 158 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID-- 158 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh--
Confidence 4566777777776666552 111011233334333334444567778889999999999888776665555555544
Q ss_pred ccCChhHHHhHHHHHHHHHhhhhccC-CCCchhhHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCchhh---h
Q 000051 2482 KDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAI---M 2552 (2612)
Q Consensus 2482 ~~~~~~ir~~a~~alg~ll~~~~~~~-~~~~~~l~~~l~~~~~~----l~~~~~-~vr~~a~~~l~~~a~~~~~~v---~ 2552 (2612)
....+.+..+.++=+++.+..... .-..-++..++.+|... ..+++. +--+.+..++.++-+.-|..+ .
T Consensus 159 --~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 159 --GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred --ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 333466667777777776643211 00112455666666654 233332 455667777888888766653 1
Q ss_pred hhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccc
Q 000051 2553 VHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590 (2612)
Q Consensus 2553 ~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~ 2590 (2612)
+-. .-+..+...++-++..+|.+....+..+|++..-
T Consensus 237 ~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 237 NDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred CCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 111 4567788888889999999999999999999764
No 246
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.54 E-value=23 Score=44.52 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhh
Q 000051 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPS 1923 (2612)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~ 1923 (2612)
.++..+...+..||+.|+.-++.+..+.|..+..++-.+++.+.....|.+..+|....+.+..++...... ..+.
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 334446788999999999999999998888888788888899999999999999999999999877665543 3456
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHH
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~ 1972 (2612)
+.+.+..++..-.+.+|..+...+.-++..+++........ +++.+..
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d 189 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKD 189 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHH
Confidence 66667777888889999999999998888776644333222 4444433
No 247
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.74 E-value=85 Score=38.14 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhhcCC----hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
.+++++.+.+|.||.+|+.-+-.+... +- .+-...++.+.+.+.++.. .+.|..++.+..--..+...-++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877666543 21 1224567777787776655 33333333321000001111222233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~ 1605 (2612)
..+...+.++.+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 344444555555566666777777765
No 248
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=80.72 E-value=1.3e+02 Score=38.36 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=49.6
Q ss_pred HHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhccCCCCchhhHH---HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2472 SILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVD---ILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2472 ~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~---~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
+++..++..+..++ |.+-.-|..-+|.++.+..+. +...+ .=+.++..+++++++||--|+.++..+--
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-----k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-----KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-----hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 57777887776655 666667888899988886421 11111 23477888999999999999999887653
No 249
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.60 E-value=60 Score=46.70 Aligned_cols=217 Identities=16% Similarity=0.114 Sum_probs=124.2
Q ss_pred CCCCHHHHHHHHhhhHHhHhhhcchh---HHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhh----hCcchhhhhcH
Q 000051 1310 NTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKG----FGISSLKKYGI 1379 (2612)
Q Consensus 1310 ~~~~~~Vq~~~~~~L~~lv~~~~~~~---~~li~~ll~~L~~~~---~~~~R~~Aa~~L~~l~~~----lg~~~l~~~~i 1379 (2612)
..+--+||....+|+-.++...++.. -..+-.++..+.+.. +...-+.+..+|..+... ++...+. .+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~--~l 929 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL--DL 929 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH--HH
Confidence 34445677777788877777666542 122334444444433 223334445555544432 2222222 56
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh---------------------------hHHHHHHHHHHHcCCC
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP---------------------------YVIQMLPLLLVAFSDQ 1432 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~---------------------------~v~~ilp~ll~~l~D~ 1432 (2612)
++.+......+.|.+.--.|+-.|-.+.+.+.+.+.. .-.-++..+.++..|.
T Consensus 930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence 6766666655556666677777777777665432211 1123455666777899
Q ss_pred CHHHHHHHHHHHHHHHH----hhcHHhH----HhHHHHHHhhhc---CCChhhHHH-------HHHHHHHHHhhCchhhh
Q 000051 1433 VVAVREAAECAARAMMS----QLSAQGV----KLVLPSLLKGLE---DKAWRTKQS-------SVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~----~l~~~~v----~~ilp~Ll~~L~---~~~w~~r~~-------a~~~L~~ia~~~p~~l~ 1494 (2612)
.+.||..|++++=++.. .+++..+ -.++-+|+++-. .++|..+.- .+..++.++...++++.
T Consensus 1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999888877765 3444322 223333333211 245654433 56677777776666543
Q ss_pred hh---------hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1495 QC---------LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1495 ~~---------L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
.. ...++..+.....|.++++..+|.+++..+..
T Consensus 1090 ~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1090 LLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 32 12334444455678899999999999987654
No 250
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=77.72 E-value=3.5 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=27.4
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
...+|.|++++.+.+++|++.|+++|++++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999986
No 251
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=77.72 E-value=2.3e+02 Score=36.96 Aligned_cols=256 Identities=19% Similarity=0.216 Sum_probs=131.0
Q ss_pred HHHHHHHHHH---HhCCCh-hhhHhhHHHHHHHhc-CCCCHH-HHHHHHHHHHHhhhhcc---------------cccHH
Q 000051 2053 NAHALGALAE---VAGPGL-NFHLGTILPALLSAM-GDDDMD-VQSLAKEAAETVTLVID---------------EEGVE 2111 (2612)
Q Consensus 2053 ~~~al~~La~---~~g~~l-~~~l~~il~~Ll~~L-~~~~~~-vr~~a~~al~~l~~~~~---------------~~~l~ 2111 (2612)
.+-|+|.+.. ++|+.- ...-++++|.-++.+ ....+. .|-++...+-.++.+-+ ...++
T Consensus 17 falalg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~ln 96 (589)
T PF11229_consen 17 FALALGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLN 96 (589)
T ss_pred HHHHHHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHH
Confidence 3456666554 345432 223345667766654 444444 34455444433332111 02377
Q ss_pred HHHHHHHhhcCC-CChhHHHHHHHHHHHHHHhc----------ccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000051 2112 SLVSELLKGVGD-NQASIRRSSAYLIGYFYKNS----------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 2180 (2612)
Q Consensus 2112 ~ll~~Ll~~l~~-~~~~vR~~A~~~L~~l~~~~----------~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l 2180 (2612)
+++..+.+.+.. +.-..+.+++..+|.+.-.+ +.||+ |+ ++..+..++..-+-.-
T Consensus 97 evir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~s-YL-------------pE~S~iRaai~f~i~~ 162 (589)
T PF11229_consen 97 EVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFS-YL-------------PESSFIRAAIDFLIEA 162 (589)
T ss_pred HHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccc-cC-------------cchhHHHHHHHHHHHc
Confidence 888888887754 56778889999999884321 12221 22 2233444444444444
Q ss_pred HhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 000051 2181 VASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT 2260 (2612)
Q Consensus 2181 ~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~ 2260 (2612)
.++-|....+.+++.+...+..++. ....| |-.-..++..|... .. ..+++....+....=+...
T Consensus 163 GkkGpe~vpp~lvkvvl~~ia~vge---------S~qyP----PVNWaalLsPLMRl-nf-GeEvq~lCLeiAvtQaqSS 227 (589)
T PF11229_consen 163 GKKGPESVPPSLVKVVLKPIATVGE---------SYQYP----PVNWAALLSPLMRL-NF-GEEVQQLCLEIAVTQAQSS 227 (589)
T ss_pred cccCCccCCHHHHHHHHHHhhhcCC---------CCCCC----CccHHHHhhHHHhc-cc-cHHHHHHHHHHHHHhcccc
Confidence 4444444555666655554433321 11122 12333444444321 22 3444433222111111111
Q ss_pred Chhhhhhchh-hhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC-CccCchHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 000051 2261 SEQSLKEFVI-PITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI-ALKPFLPQLQTTFIKCLQD-STRTVRSSAALAL 2337 (2612)
Q Consensus 2261 ~~~~l~p~v~-~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~-~l~p~lpqL~~~~~k~L~d-~~~~vR~~Aa~aL 2337 (2612)
.+...++. -+.+|++..+. ...|...+..+......++. .++.|+..+.-.+.+..+. .++++...|...|
T Consensus 228 --qsAa~fLg~WlsPpli~sLs----~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGL 301 (589)
T PF11229_consen 228 --QSAAMFLGSWLSPPLIHSLS----VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGL 301 (589)
T ss_pred --ccHHHHHHhhcCcchhhhhh----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Confidence 23344443 34567877764 34778888888888776654 3456766555444444443 3788888888888
Q ss_pred HHHHhc
Q 000051 2338 GKLSAL 2343 (2612)
Q Consensus 2338 g~L~~~ 2343 (2612)
..-+..
T Consensus 302 sqAMKl 307 (589)
T PF11229_consen 302 SQAMKL 307 (589)
T ss_pred HHHhcC
Confidence 776554
No 252
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.71 E-value=1.7e+02 Score=43.39 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=86.6
Q ss_pred HhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHH----HHHHhhcCCCChhHHHHHHHHHHHHHHhcccch
Q 000051 2072 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLV----SELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 2147 (2612)
Q Consensus 2072 l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll----~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~ 2147 (2612)
++.-+..+++.+...|+..+..|...+..++...+.+....++ ....+.+.|.+..+|..+...+..+....+..+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777788889999998988888766554444433 344455678999999999999999999989999
Q ss_pred hccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000051 2148 VDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2612)
Q Consensus 2148 ~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~ 2182 (2612)
++|+..+++.......|.+..|-.+|.........
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 99999999999988889998888877776665544
No 253
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=77.05 E-value=2.2e+02 Score=36.23 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=65.6
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHHHhh-------hchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000051 1743 LDGLADENESVRDAALGAGHVLVEHYA-------TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2612)
Q Consensus 1743 l~~L~d~~~~VR~~Al~al~~lv~~~~-------~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2612)
.+++..++-+|-..|...++.+..... ....+.+...+...+.++|+-+|..+++++|+++-.-+
T Consensus 170 f~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~-------- 241 (335)
T PF08569_consen 170 FKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRS-------- 241 (335)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGG--------
T ss_pred HHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchh--------
Confidence 344444555555555555555443221 11234455667778889999999999999999984210
Q ss_pred cCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC
Q 000051 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2612)
Q Consensus 1816 ~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~ 1875 (2612)
....+...++. .+.+..+...+.|.+..++-.|.++++-++.+.
T Consensus 242 -------------n~~vm~~yi~~---~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 242 -------------NFNVMTRYISS---PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp -------------GHHHHHHHTT----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred -------------HHHHHHHHHCC---HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 11222233322 234555556689999999999999999999864
No 254
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.95 E-value=2e+02 Score=35.32 Aligned_cols=156 Identities=16% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhh----hcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000051 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK----YGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRL 1413 (2612)
Q Consensus 1339 i~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~----~~i~~~L~~-~i~~~~~~~~R~~Al~al~~L~~~~~~~ 1413 (2612)
++.++..+.++++.+.|..+-.++..+-.--|....+. ..-.+.+.. +.+...||.+-+.++.++..++-.-|+.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 45677777777776777666666665555445444431 122333333 3344557777777777777766544421
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
-...+. . ..-+.+.+++ ...|. ...+++.+|+++.+|+.....+-
T Consensus 365 sa~~ie----~----------G~a~~avqAm----kahP~-----------------~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKAIE----A----------GAADLAVQAM----KAHPV-----------------AAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHHHh----c----------chHHHHHHHH----HhCcH-----------------HHHHHHHHHHHHHHHHHhhhhcc
Confidence 110000 0 0111112221 11111 23457788899988887666555
Q ss_pred hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
...+..-+..|+..-...|+.++..|-.||..++-.
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 555555566777777778999999999999888754
No 255
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=75.42 E-value=18 Score=42.00 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCC
Q 000051 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1592 vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~ 1671 (2612)
.-.....+++.+...++. ...|++..++..+-++-.+++...|..+-.++|+.++.+|++.+-.++|.-++. .+..
T Consensus 16 aw~~vl~v~s~lf~~lg~--~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~--~~~~ 91 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGE--RSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN--ADDS 91 (198)
T ss_pred HHHHHHHHHHHHHHHHhh--hccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC--CCcC
Confidence 344455555665555544 245677777777888777888899999999999999999988555555522211 1111
Q ss_pred HHHHHHHHHHHHHHHHHhChhhH-HhHhHHHHHh---ccC-----CChhhH---hHHHHHHHHhhhhhc--cchhhhHHh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYF-EHILPDIIRN---CSH-----QRASVR---DGYLTLFKYLPRSLG--VQFQNYLQQ 1737 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l-~~llp~l~~~---~~~-----~~~~vR---~~~~~~l~~L~~~~g--~~f~p~l~~ 1737 (2612)
...|.=..--+-.-+....-.++ +.++|-.... ..+ ...+.| .-..+.|.-++..+. .+....++.
T Consensus 92 ~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~ 171 (198)
T PF08161_consen 92 QPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPS 171 (198)
T ss_pred CcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHH
Confidence 10111000000000001111111 3344332211 111 111111 233456666666552 345444556
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 1738 VLPAILDGLADENESVRDAALGAGHVL 1764 (2612)
Q Consensus 1738 iip~ll~~L~d~~~~VR~~Al~al~~l 1764 (2612)
+-+.+.+.|.+. +++|.....+++.+
T Consensus 172 ~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 172 FAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 666666666664 67888777777654
No 256
>PF05536 Neurochondrin: Neurochondrin
Probab=74.71 E-value=3.3e+02 Score=37.23 Aligned_cols=186 Identities=11% Similarity=0.056 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhhhc---ccccHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc
Q 000051 2088 MDVQSLAKEAAETVTLVI---DEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 2163 (2612)
Q Consensus 2088 ~~vr~~a~~al~~l~~~~---~~~~l~~ll~~Ll~~l~~~~~-~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~ 2163 (2612)
...+..+...+..+...- ..+.+-.-+|.|++.+.+.+. .+-.-+..+|..++......-.-.-...++.|...+.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 344555555555554411 124466778888888866555 7777788888877733211111111233444444443
Q ss_pred CCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCH
Q 000051 2164 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 2243 (2612)
Q Consensus 2164 d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~ 2243 (2612)
+ .+...+.+...|..++.....+..+. .++.+..+++.+...+.....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~-------------------------------~~~~l~~il~~La~~fs~~~~ 198 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAE-------------------------------DSQLLHSILPSLARDFSSFHG 198 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhh-------------------------------hHHHHHHHHHHHHHHHHhhcc
Confidence 3 44556666666666655443222111 112233444445444544455
Q ss_pred HHHHHHHHHHHHHHHhcChh-----hhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000051 2244 ELREQAALGLGELIEVTSEQ-----SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2612)
Q Consensus 2244 ~~r~~aa~~L~~li~~~~~~-----~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2612)
+.+-+++..|+.+....+.. .-..+...+..-+-.+++.+..+.-|..++...+.+++..|.
T Consensus 199 ~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 199 EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 56677778888877666311 122345666666777888888888999999999988887664
No 257
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.53 E-value=93 Score=39.37 Aligned_cols=169 Identities=18% Similarity=0.183 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhhhCcch
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKGFGISS 1373 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~~~~---~~~~R~~Aa~~L~~l~~~lg~~~ 1373 (2612)
....++..+..++.-++..++..+..++...+... .+.++.+++.+.+.- +......+..+|..++..-....
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 45556668888888999999999988886654432 256677777766532 23345788899998886433222
Q ss_pred h-hhhcHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHH---HhcccchhhHHHHHHHHHHHcCC-CCHHHHHHHHH
Q 000051 1374 L-KKYGIAATLREGL------ADRNSAKRREGALLAFECLCE---KLGRLFEPYVIQMLPLLLVAFSD-QVVAVREAAEC 1442 (2612)
Q Consensus 1374 l-~~~~i~~~L~~~i------~~~~~~~~R~~Al~al~~L~~---~~~~~~~~~v~~ilp~ll~~l~D-~~~~VR~aa~~ 1442 (2612)
. -..+.++.+.+.+ .+..+......+++++-.++- ..+.....+ ++|.+...+++ ....|-+-+..
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHH
Confidence 1 1124555666666 233345566667777766541 111111222 67777766653 34455556666
Q ss_pred HHHHHHHhhcHHh----HHhHHHHHHhhhcCCCh
Q 000051 1443 AARAMMSQLSAQG----VKLVLPSLLKGLEDKAW 1472 (2612)
Q Consensus 1443 al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w 1472 (2612)
+++.+++.-.... +..=++.+++.|...+|
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 6766665444321 12223444555555555
No 258
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.32 E-value=12 Score=39.04 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 000051 1936 SASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2612)
Q Consensus 1936 ~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~ 1994 (2612)
++.+-.-+|.-||+++...+.. ...+ -..-..+...+.++|++||..|..|+..+.-
T Consensus 57 d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5555666677777766654321 1111 2344566788899999999999999887753
No 259
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=72.99 E-value=70 Score=44.27 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-
Q 000051 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER- 1919 (2612)
Q Consensus 1841 ~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~- 1919 (2612)
+..+++..+|....|....-|. +.-|...+...|..+..+-..|.....+-+.......-..|..++..++.++.+.
T Consensus 14 RyKkLV~~iFPr~~e~gpn~s~--m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~ 91 (819)
T KOG1877|consen 14 RYKKLVDNIFPRSPEDGPNKSK--MEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI 91 (819)
T ss_pred HHHHHHHHhCCCCCCCCccccc--HHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh
Confidence 3345555555533332222221 2334445555566555555555555555555555555567889999999888776
Q ss_pred --hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh-hHHHhHhHHHHHHHHHhcC-Cc----HHHHHHHHHHHHH
Q 000051 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCD-SI----LEVRESAGLAFST 1991 (2612)
Q Consensus 1920 --~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~D-~d----~~Vr~~A~~al~~ 1991 (2612)
+...++..+...|.+.+++.+..+|..+...+...... .+.--++.+++.+..+... .+ ..+|.+...++..
T Consensus 92 n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa 171 (819)
T KOG1877|consen 92 NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSA 171 (819)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHH
Confidence 45677788888888889999999998888775433221 2222235555555554432 22 2344444444443
Q ss_pred HHH---------HhCh-hhhhhhHHHHHHhccCC
Q 000051 1992 LFK---------SAGM-QAIDEIVPTLLHALEDD 2015 (2612)
Q Consensus 1992 l~~---------~~g~-~~~~~ilp~Ll~~L~~~ 2015 (2612)
+.. .++. ...+.++|.+...+...
T Consensus 172 ~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~ 205 (819)
T KOG1877|consen 172 VVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSI 205 (819)
T ss_pred HHHHHHhhhhhhhhhhhhhhccchhhHHHhhcch
Confidence 321 1222 12566677776665443
No 260
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.13 E-value=56 Score=35.95 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhcc--HHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE--APNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~--~~~il~~L~~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+.+-...+..|.+.+.+.++.+...|+.++..+.+++|..+-.. -.+++..|..++.+ .+..|+......+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999998765443 25778888888887 7889999998888888776
Q ss_pred cCccccccHHHHHHHHH
Q 000051 2184 VPKEVQPSYIKVIRDAI 2200 (2612)
Q Consensus 2184 ~~~~~l~~lv~~l~~~l 2200 (2612)
...+.--..+..+.+.+
T Consensus 112 f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 112 FKNDPSLSLMSDLYKKL 128 (144)
T ss_pred hCCCcccHHHHHHHHHH
Confidence 65433222333344433
No 261
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=70.93 E-value=2.6e+02 Score=34.27 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=111.4
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc--------hhccHHHHHHHHHHHhcCCC-----hhHHHHHH
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY--------LVDEAPNMISTLIVLLSDSD-----STTVAAAW 2174 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~--------~~~~~~~il~~L~~ll~d~d-----~~V~~~a~ 2174 (2612)
..++.+-+.+++++++. ..-..++..+..+....... +.-.+-..++.++..+++++ +.++ ...
T Consensus 60 ~~f~Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIA 136 (262)
T ss_pred CCchhHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHH
Confidence 35667778888888774 33455666666665543221 11123455667777777766 3444 455
Q ss_pred HHHHHHHhhcCccccccHHHHHH-HHHHhhhhhhhhhhc-CCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHH
Q 000051 2175 EALSRVVASVPKEVQPSYIKVIR-DAISTSRDKERRKKK-GGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALG 2252 (2612)
Q Consensus 2175 ~aL~~l~~~~~~~~l~~lv~~l~-~~l~~~~~~~~~~~~-~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~ 2252 (2612)
++++.++...+...+..++...- ... ++. .++. +....+.....|+.-..++-.++..+.++.+-.|......
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~f---r~~--~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRF---RDK--DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCC---CCH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 78888886555443332222110 000 000 0000 0000122223466666777778888889999999999999
Q ss_pred HHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000051 2253 LGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2612)
Q Consensus 2253 L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2612)
|..+.....- -+|+...++.|+.|.+... .-..|++.|..+....|.
T Consensus 212 L~~ll~~~d~--~~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 212 LKVLLPHVDM--RSPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHhccccC--CCCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhccc
Confidence 9999988753 3678889999999999754 345678888777765554
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=70.15 E-value=41 Score=36.94 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhc
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.+..|.+-+.++ |+++...|+.+++.+.+.+|..|...+. .++..+...+.+ .++.|++.+...+......+.
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5777788888876 7999999999999999999987876654 567777777776 688899888777777765554
No 263
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.36 E-value=2.8e+02 Score=34.05 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=61.6
Q ss_pred HHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--hhhchhhhhH
Q 000051 1700 DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSLPLLL 1777 (2612)
Q Consensus 1700 ~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~--~~~~~i~~ll 1777 (2612)
.+...+.+.+|.||..++..+..+...-+..|..|-...++.+.+.+.+..+ .+. |..++..+.+. .....+..++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~-a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEP-AATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556677889999999987777666665566777777888999999988776 222 22333222211 1112233345
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1778 PAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1778 p~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
..+...+.|+.|..-...+.++..+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NL 109 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNL 109 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHh
Confidence 5555666677676655555555554
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.60 E-value=31 Score=39.95 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchh
Q 000051 2471 LSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA 2550 (2612)
Q Consensus 2471 ~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~ 2550 (2612)
...++.+.+.+.+.+..+|..|+..++.++..+.. .+...++.++....|++..+|..|...++.+..++|+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-------nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-------NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-------ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 34455556667788999999999999999886542 35789999999999999999999999999999999888
Q ss_pred hhhh
Q 000051 2551 IMVH 2554 (2612)
Q Consensus 2551 v~~~ 2554 (2612)
+...
T Consensus 80 v~~~ 83 (187)
T PF12830_consen 80 VESR 83 (187)
T ss_pred HHHH
Confidence 6543
No 265
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.31 E-value=20 Score=40.52 Aligned_cols=87 Identities=25% Similarity=0.370 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC--hhhHH
Q 000051 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG--KSQLL 1960 (2612)
Q Consensus 1886 ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~--~~~l~ 1960 (2612)
+++.+...|.+.+...|..|...+.+++-..|+. ++|+++..+..++...|.++...++..|..+....+ +.++.
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 3445555566667778899999999999888876 578999999999999999988888888877765433 56788
Q ss_pred HhHhHHHHHHHH
Q 000051 1961 SFMDELIPTIRT 1972 (2612)
Q Consensus 1961 ~~l~~ll~~l~~ 1972 (2612)
+|+.+++|.+..
T Consensus 195 PfYRQlLp~~n~ 206 (262)
T KOG3961|consen 195 PFYRQLLPVLNT 206 (262)
T ss_pred hHHHHhhhhhhh
Confidence 999999998764
No 266
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=67.94 E-value=89 Score=36.93 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHH-HHHHHHHHhhCCccccCCc
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSP 2468 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~ 2468 (2612)
+.....+..+..+...+.|..+..+++......... ..+.+..++. .-++|...... ...+..++...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~-~~~~~~~~~~--~~~~W~~~D~~~~~~~~~~~~~~-------- 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTEE-DLELLEKWLP--DIDNWATCDSLCSKLLGPLLKKH-------- 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH-HHHHHHHCCC--CCCCHHHHHHHTHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH-HHHHHHHHhc--cCCcchhhhHHHHHHHHHHHHhh--------
Confidence 455566667777777888888887777655444322 1223332222 23455332211 11222222211
Q ss_pred hhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000051 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2612)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~ 2548 (2612)
+...+.+...+.++++..|+.|+.++-..... .....++..+...+.|++.-||.+...+|+.++.++|
T Consensus 119 --~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 --PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp --GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred --HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 34567778888999999999998776554433 2455667777777889999999999999999999999
Q ss_pred hhhhhhHhH
Q 000051 2549 SAIMVHVAL 2557 (2612)
Q Consensus 2549 ~~v~~~l~~ 2557 (2612)
+.+.+++..
T Consensus 188 ~~v~~~l~~ 196 (213)
T PF08713_consen 188 DEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988866
No 267
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=67.68 E-value=2.3e+02 Score=35.94 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhch-------hhhhhHHHH
Q 000051 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGE-------RVLPSIIPI 1927 (2612)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~---~~~~~R~~A~~aL~~lv~~~~~-------~~l~~llp~ 1927 (2612)
++|-.....++..+-......+..++..++...+..+.+ ..++.|..-...+..+++.+.+ .....++..
T Consensus 90 ~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ids 169 (319)
T PF08767_consen 90 PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDS 169 (319)
T ss_dssp HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444555666666666666653 4689999998888888876533 345677788
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhCh---h----hHHHhHhHHHHHHHHHhcCCc
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGK---S----QLLSFMDELIPTIRTALCDSI 1978 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~---~----~l~~~l~~ll~~l~~~L~D~d 1978 (2612)
+..+++++++++-..++.++.+++..+.. + -...|+-.++..+...+.|++
T Consensus 170 i~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 88899999999999999999998877655 2 223445555666666666654
No 268
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=67.60 E-value=3.7e+02 Score=34.82 Aligned_cols=219 Identities=20% Similarity=0.188 Sum_probs=125.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccCChhHHH----HH-HHHhhhc--CCHHHHHHHHHHHHHHHHhc--CCCcChHHHHH
Q 000051 2321 CLQDSTRTVRSSAALALGKLSALSTRVDPLV----GD-LLSSLQV--SDAGIREAILTALKGVLKHA--GKSVSSAVKIR 2391 (2612)
Q Consensus 2321 ~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l----~~-Ll~~l~~--~d~~vr~~~l~AL~~vi~~~--g~~~~~~~~~~ 2391 (2612)
.++++ .+||.++...+-.++.-...+..+. +. ++..+.. ....-|+.+++-.+.++... ...+. ..
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~----~~ 108 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP----RG 108 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC----HH
Confidence 45555 9999999999988865322111111 11 1222221 22445888888888888763 23333 34
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh-----HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccc-c
Q 000051 2392 VYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG-----QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI-S 2465 (2612)
Q Consensus 2392 i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~-----~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~-~ 2465 (2612)
+...+....++.++..|..+.+.|..++...|+- .+..+++.+++ .........+.++.+++......- +
T Consensus 109 vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 109 VVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSISESLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHHhCCcchhhhh
Confidence 4444555556688999999999999999888852 23444443332 222233344555655554433222 1
Q ss_pred CCch-hHHHHHHHHhh---hccCCh--hHHHhHHHHHHHHHhhhhcc-CCCCchhhHHHHHHHHhhcCCCCHHHHHHHHH
Q 000051 2466 MSPL-FLSILDRLKSS---LKDEKF--PLREASTKALGRLLLHQIQS-GPANTTVVVDILASVVSALHDDSSEVRRRALS 2538 (2612)
Q Consensus 2466 ~~~~-~~~i~~~l~~~---~~~~~~--~ir~~a~~alg~ll~~~~~~-~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~ 2538 (2612)
..++ .+.+...+.+. ...++. ..-.++..++..++..-..- ... ..-..-+..++..+..++.++|...+.
T Consensus 185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~--~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS--MNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee--cCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 1211 23344444433 112222 34555777777777653210 000 011256777888888899999999999
Q ss_pred HHHHHHhhCchh
Q 000051 2539 ALKSVAKANPSA 2550 (2612)
Q Consensus 2539 ~l~~~a~~~~~~ 2550 (2612)
.+-.+-+-++..
T Consensus 263 ll~dllrik~p~ 274 (371)
T PF14664_consen 263 LLFDLLRIKPPS 274 (371)
T ss_pred HHHHHHCCCCCC
Confidence 999988866543
No 269
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=67.40 E-value=3.4e+02 Score=34.37 Aligned_cols=165 Identities=12% Similarity=0.184 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhhhhccc------ccHHHHHHHHHhhcCCCChhHHH-HHHHHHHHHHHhcccchhccHHHHHHHHHHH-
Q 000051 2090 VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQASIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIVL- 2161 (2612)
Q Consensus 2090 vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~~~~~~vR~-~A~~~L~~l~~~~~~~~~~~~~~il~~L~~l- 2161 (2612)
+|...+.-+...+....+ .-+++++..++.-.++..|..|. ..+.+++.++...+..+.++++.++..++..
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344445555555544332 22455555555555556666666 4667777888888777788888777776653
Q ss_pred ---hcC---CChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHH
Q 000051 2162 ---LSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL 2235 (2612)
Q Consensus 2162 ---l~d---~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~ 2235 (2612)
+.+ .-|+.|..-..-|..+........ -. +| |.....++..+.
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l------------~~---------------lp----~~~f~~~idsi~ 171 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPAL------------LQ---------------LP----PEQFKLVIDSIV 171 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHH------------HH---------------S-----HHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHH------------Hc---------------CC----HHHHHHHHHHHH
Confidence 332 236777777766666665443211 00 10 123345677788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCh---hh----hhhchhhhhHHHHHHhcCCCC
Q 000051 2236 QGLISGSAELREQAALGLGELIEVTSE---QS----LKEFVIPITGPLIRIIGDRFP 2285 (2612)
Q Consensus 2236 ~~L~~~~~~~r~~aa~~L~~li~~~~~---~~----l~p~v~~i~~pLi~~l~~~~~ 2285 (2612)
.|+.+...++-+.+..++..++..... +. ++.|.-.+..-+..++.|...
T Consensus 172 wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 172 WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 889999999999999999999877543 22 233344445555666666543
No 270
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=66.86 E-value=5.7e+02 Score=36.67 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=60.0
Q ss_pred hhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhc--cccc----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH
Q 000051 2068 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYK 2141 (2612)
Q Consensus 2068 l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~--~~~~----l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~ 2141 (2612)
...+.+.+...+...+..++...-...+.++..+.... .... +.+-....- +.-..++......++.+..
T Consensus 435 ~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N----~~~~~~~~~~~~il~rls~ 510 (727)
T PF12726_consen 435 VSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFN----KSLGQITDLISQILERLSD 510 (727)
T ss_pred chhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777776666666666554311 1111 111111110 1112233344445555544
Q ss_pred hcccchhccH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhh
Q 000051 2142 NSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2142 ~~~~~~~~~~--~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~ 2183 (2612)
..+.++...+ ++....++.++=.++.++.++|.+-+..+.+.
T Consensus 511 ~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 511 FDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred CCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 4333333222 25556667777788888988888888877753
No 271
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=66.66 E-value=83 Score=36.67 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHh
Q 000051 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~ 1465 (2612)
.-...+..++.+.+.+|....|++..++..+-+.-.+++...|+.+..+++..+..++++.+-.++|.-++
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 33456777788888888777888888888888887888888999999999999999999988888885444
No 272
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.66 E-value=1.3e+02 Score=38.20 Aligned_cols=100 Identities=17% Similarity=0.067 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCc-chhhHh----hhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCch---hhH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKD-MIPYIG----LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP---DLV 1659 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~-l~~~l~----~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~---~ll 1659 (2612)
.+.++.+.....+++++..-....+ +..+.. .....+.+.+..+++.++..|+..++.++...+..... +++
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 3567777777777777763211111 111110 13445556888889999999999999999876655444 677
Q ss_pred HHHHHHhccCCCH---HHHHHHHHHHHHHHH
Q 000051 1660 SWLLDALKSDNSN---VERSGAAQGLSEVLA 1687 (2612)
Q Consensus 1660 ~~L~~~L~~~~~~---~~R~~aa~~L~~i~~ 1687 (2612)
+.+++.+.+.... ..+..++++++.++.
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 8888877764332 223566777877764
No 273
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.73 E-value=6.2e+02 Score=36.75 Aligned_cols=134 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHh
Q 000051 2401 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKS 2479 (2612)
Q Consensus 2401 ~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~ 2479 (2612)
+|-++.+|..+.+-||.....+|+--+..-.-.++.| +.+.+..+|..++.+|..+....-....-..+...+-..+++
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3568899999999999999999964222222223455 456666788888888888875421111111233444445555
Q ss_pred hh-ccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000051 2480 SL-KDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS 2542 (2612)
Q Consensus 2480 ~~-~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~ 2542 (2612)
.+ ++.++.||..++.-+-.....+. .-..-+..+...+-|.+..++++|..-+..
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~--------L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGL--------LSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccc--------cChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 44 45555565555443322211110 112344455555667888888888776543
No 274
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=64.78 E-value=5.1e+02 Score=35.36 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=64.7
Q ss_pred ccccCChhhHhhHHHHHHHhh-cCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1565 FVNTVDAPSLALLVPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2612)
Q Consensus 1565 ~~~~i~~~~l~~iip~L~~~l-~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2612)
+.+..+...+..++-.+...+ .++...+|-..++.++.+++....+++-.+..+.+...+..+|.|.+|-++..|.+++
T Consensus 468 ~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF 547 (559)
T PF14868_consen 468 FIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAF 547 (559)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 445556666677777777766 3445568999999999998764333333356777777778889999999999999999
Q ss_pred HHHHhhhC
Q 000051 1644 GSLIRGMG 1651 (2612)
Q Consensus 1644 ~~L~~~~g 1651 (2612)
+.+++...
T Consensus 548 ~~FAe~T~ 555 (559)
T PF14868_consen 548 GQFAERTS 555 (559)
T ss_pred HHHhccCC
Confidence 99998543
No 275
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=64.59 E-value=39 Score=37.20 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC
Q 000051 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2612)
Q Consensus 1633 ~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~ 1669 (2612)
+.||...+.++..++...-++..+++++.+++.+.++
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~ 38 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS 38 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc
Confidence 4678888999999998887788899999998887764
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=64.33 E-value=1.1e+02 Score=33.35 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=56.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2612)
+.+..+.+-++++ ++++..-|+.++..+.+.+|..|...+. ..+.-++..+.+ .++.|++.....+.....
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777778877 7999999999999999999987876654 456666666642 568899988777776655
Q ss_pred hhc
Q 000051 1450 QLS 1452 (2612)
Q Consensus 1450 ~l~ 1452 (2612)
.+.
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 543
No 277
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=64.06 E-value=5e+02 Score=35.08 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=103.1
Q ss_pred hHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCC
Q 000051 2230 LLPIFLQGLIS----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 2305 (2612)
Q Consensus 2230 ilp~l~~~L~~----~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~ 2305 (2612)
+-|+..++..+ .+++.+..|..++..+.=-.. .|...-.+-||+.+.....+.+|..+.-.||.+.-...
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~-----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN- 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF-----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN- 966 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh-
Confidence 44666666665 577888888888887652221 23333345578888766678899999999988876543
Q ss_pred CccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2306 ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2306 ~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
.+.+.....+.+.|.|.+..||..+...+..|+ ..+-.+...++.+...+.++|.++.+-+-..+.++..+
T Consensus 967 ---~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 967 ---TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred ---hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 467788888999999999999999999998884 33445667788888889888877777666666666543
No 278
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=64.01 E-value=7.3e+02 Score=36.97 Aligned_cols=209 Identities=12% Similarity=0.109 Sum_probs=111.8
Q ss_pred HHHHHHHhccccccCChh---hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHh---hhHHHHHHHh
Q 000051 1555 YSLDILLQTTFVNTVDAP---SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG---LLLPEVKKVL 1628 (2612)
Q Consensus 1555 ~al~~L~~~~~~~~i~~~---~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~---~ll~~L~~~L 1628 (2612)
++..+|.+.+|-...... ....++..+...+.....++....+.+|.||...... .+...+. .+.....-.+
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~--nmKkvLrE~GsVtaLa~~al 447 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS--NMKKVLRETGSVTALAACAL 447 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc--cHHHHHHhhhhHHHHHHHHH
Confidence 455555554453322211 1234666777777776667777777778887765322 1222221 1222222334
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHhccCCCHHHHHHHH-------HHHHHHHHHhChh--hH
Q 000051 1629 VDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAA-------QGLSEVLAALGTV--YF 1694 (2612)
Q Consensus 1629 ~d~~~~VR~~A~~aL~~L~~~~g~~-----~~~~ll~~L~~~L~~~~~~~~R~~aa-------~~L~~i~~~~g~~--~l 1694 (2612)
.......-+..+.+|-.|...+-+. ..+..+.+|...|..+.... -...+ ..++..+.....- .+
T Consensus 448 ~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~-tLaIIEsaGGILRNVSS~IAt~E~yRQIL 526 (2195)
T KOG2122|consen 448 RNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSN-TLAIIESAGGILRNVSSLIATCEDYRQIL 526 (2195)
T ss_pred HhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcc-hhhhhhcCccHHHHHHhHhhccchHHHHH
Confidence 4455556667777887777766654 34667778888776553221 11111 1222222222221 11
Q ss_pred --HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh--HHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 000051 1695 --EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2612)
Q Consensus 1695 --~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~--iip~ll~~L~d~~~~VR~~Al~al~~lv~~ 1767 (2612)
...+..+++.+.+..-.+-..+|-.|-.|....+.+ ..|+-+ .++.+...+...+..+-..+..+++.++.+
T Consensus 527 R~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 527 RRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 345666667666655444444555555555444432 233332 677777777777777777777888777654
No 279
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.43 E-value=70 Score=35.12 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=38.3
Q ss_pred HhHhHHHHHHHHHhcCCc----HHHHHHHHHHHHHHHHHhChhhh--hhhHHHHHHhccCCCcchHHHHH
Q 000051 1961 SFMDELIPTIRTALCDSI----LEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTALDG 2024 (2612)
Q Consensus 1961 ~~l~~ll~~l~~~L~D~d----~~Vr~~A~~al~~l~~~~g~~~~--~~ilp~Ll~~L~~~~~~~~al~~ 2024 (2612)
...+.+++.+.+.+.... .++...+.+++...........+ .++++.+++.|.++.....|.+.
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~c 147 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344566666666665322 77778888888877664443322 34677777777666655555443
No 280
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.71 E-value=5.3e+02 Score=34.89 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=83.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH-HhccCChhHHHHHHHHhhhcC
Q 000051 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQVS 2361 (2612)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~-d~~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~Ll~~l~~~ 2361 (2612)
.++....+|-.+|..+.--... |...-.|+++..+. .|+|.+|..|.-+||.+ +.+...+|..-.-|...+.+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~----fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De 983 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFE----FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDE 983 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcch
Confidence 3567888888888876543333 33444455555665 57999999999999999 445666777777888888888
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000051 2362 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 2419 (2612)
Q Consensus 2362 d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~ 2419 (2612)
+..||.+.+-.+..++-..--++ ..+. ..+...+.|++.++..+|--.+-.++
T Consensus 984 ~~~V~rtclmti~fLilagq~KV-KGql----g~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 984 DADVRRTCLMTIHFLILAGQLKV-KGQL----GKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hhHHHHHHHHHHHHHHHccceee-ccch----hhhHhhccCCcchHHHHHHHHHHHHH
Confidence 88999999988888876532222 1111 12234556666666665544444444
No 281
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=61.56 E-value=94 Score=34.15 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=56.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhc
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.+..|.+-+.++ |+++..-|+..++.+...+|..|...+. .++..+...+. ..++.|++.+...+......+.
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 6777788888876 7999999999999999999987766543 45555555554 5677899888777776655443
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.47 E-value=8.6e+02 Score=38.38 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhh-hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIP-ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~-i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
..++++..+..|...++..+......+..+. ++.++...+.+. ..+.....+..+..--...=..+++.++
T Consensus 933 ~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~-~~~~v~~i~~~i~~~~~d~i~~~~~~~~------- 1004 (2382)
T KOG0890|consen 933 FKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLEHI-ELNLVSSILDFISLDNRDNIQILKSDIP------- 1004 (2382)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhccc-cHHHHHHHHHHHHHhhHHHHHhhhcccc-------
Confidence 4678888899999999988876666666666 566777766322 3444455555443211111001111111
Q ss_pred HHhcCCCHHHHHHHH-HHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhc--------CCCcC-hHHH
Q 000051 2320 KCLQDSTRTVRSSAA-LALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA--------GKSVS-SAVK 2389 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa-~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~--------g~~~~-~~~~ 2389 (2612)
.+.+..+..+..++ .-.-.+.... .++..++.++..+......+|...+.-|...+.+. ...++ ++..
T Consensus 1005 -~l~~~p~~~~~~~~~~~~r~~~~~~-~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l 1082 (2382)
T KOG0890|consen 1005 -ILPSIPELGNLKAAIQEARGLLSED-DLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDL 1082 (2382)
T ss_pred -ccCCchHHHHHHHHHHHHHhhcccc-chhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhH
Confidence 11121111111111 1111111111 23445566666666666667777777776666521 11111 2455
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
..+++.|...+.+.+......+|+|||.++...|.
T Consensus 1083 ~ql~~~Ll~gc~k~~~~~~~~~akcLg~lgaidp~ 1117 (2382)
T KOG0890|consen 1083 SQLLTVLLDGCQKKTSQLEELCAKCLGELGAIDPS 1117 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch
Confidence 66777776666665667889999999999988886
No 283
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.33 E-value=6.6e+02 Score=37.16 Aligned_cols=227 Identities=15% Similarity=0.174 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccc---hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhHHHHHHh
Q 000051 1393 AKRREGALLAFECLCEKLGRLF---EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLK 1465 (2612)
Q Consensus 1393 ~~~R~~Al~al~~L~~~~~~~~---~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~ 1465 (2612)
..+|.+.+.++-.+.+..|... .+++.+++..+...-...+..+-+.+-.+++.++++ ++...+..++..+..
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 4566677777777777777422 356666666555554455566666777788887764 455556666666654
Q ss_pred hhcC-CChhhHHHH---HHHHHHHHhh----Cchhhh---------------hhhch-----hHHHHhhhhcCCCHHHHH
Q 000051 1466 GLED-KAWRTKQSS---VQLLGAMAYC----APQQLS---------------QCLPK-----IVPKLTEVLTDTHPKVQS 1517 (2612)
Q Consensus 1466 ~L~~-~~w~~r~~a---~~~L~~ia~~----~p~~l~---------------~~L~~-----ivp~L~~~L~D~~~~VR~ 1517 (2612)
.-.. .+-.+-..| .+.++.+.+. ..+... ..+++ ++..+.+++.|+.++||+
T Consensus 936 fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRn 1015 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRN 1015 (1610)
T ss_pred HHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhh
Confidence 3321 122222222 2233333321 000000 01111 234556778899999999
Q ss_pred HHHHHHHHHHhhcCCh----hH-----hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCC
Q 000051 1518 AGQTALQQVGSVIKNP----EI-----ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2612)
Q Consensus 1518 aA~~aL~~l~~~~~~~----~i-----~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~ 1588 (2612)
.|++.+-++...-++. .+ .-++|.|-+. |...+.+ ..+. . + +.
T Consensus 1016 gAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~---~~q~~~e---------wngk-------e--------i-qk 1067 (1610)
T KOG1848|consen 1016 GAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQ---PIQNVSE---------WNGK-------E--------I-QK 1067 (1610)
T ss_pred hHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccc---cccchhh---------hcch-------h--------H-hh
Confidence 9999998776543321 11 2233333211 1110100 0000 0 0 00
Q ss_pred CHHHHHHHHHHHHHHhhccCCC-------CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEP-------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~-------~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~ 1649 (2612)
+| -...+-.++.+++.+.+. ..+....+.++..+..+..+.++++.-.|++++..+...
T Consensus 1068 qw--tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1068 QW--TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hh--hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 11 112333344444433221 234455677888888888999999999999999887653
No 284
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.96 E-value=27 Score=36.93 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhc--C---------CcchhhhhHHHHH
Q 000051 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLK--D---------GSTPVRLAAERCA 2581 (2612)
Q Consensus 2513 ~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~--~---------~~~~vk~aae~~~ 2581 (2612)
...+++.-+..-+++.++.||.=++.+|..++++++..++-.+..-...+-.+.. . .+-.||.+|..++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3557777888889999999999999999999999988876666555555544432 1 3445999999999
Q ss_pred HHHhc
Q 000051 2582 VHAFQ 2586 (2612)
Q Consensus 2582 ~~~~~ 2586 (2612)
..+|.
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 88875
No 285
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.49 E-value=56 Score=34.62 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHH---HHHHHHHHHhc--------CCChhHHHHHHHH
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP---NMISTLIVLLS--------DSDSTTVAAAWEA 2176 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~---~il~~L~~ll~--------d~d~~V~~~a~~a 2176 (2612)
.....++..|.+.+++.++.|+.-++.+|..++...+.++...+. .++..+...-. +....||..|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 457789999999999999999999999999999988766655443 34444444322 2235789999888
Q ss_pred HHHHHh
Q 000051 2177 LSRVVA 2182 (2612)
Q Consensus 2177 L~~l~~ 2182 (2612)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 887764
No 286
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=59.70 E-value=2.5e+02 Score=33.14 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHH-HHHHHHHHHhhCCccccCCc
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHG-SVLVFATFLRHNPSAISMSP 2468 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~l~~~l~~~p~~~~~~~ 2468 (2612)
+....++..+.+++.-+.|-.+...+...-+...++. .+.+..++.. -++|...-. +...++.++...|
T Consensus 45 ~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-~~~~~~~l~~--~~~Wd~vD~~~~~i~g~~~~~~~------- 114 (208)
T cd07064 45 EELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-LPLLEELITT--KSWWDTVDSLAKVVGGILLADYP------- 114 (208)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHcC--CchHHHHHHHHHHHhHHHHhCCh-------
Confidence 3445555556665555677777776666555555443 2333334332 345543221 1112222222221
Q ss_pred hhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000051 2469 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 2548 (2612)
Q Consensus 2469 ~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~ 2548 (2612)
...+.+.+...+++...|+.|+.+.-+.... . ....+..-....++|+..=|+.+.--+|+.+++.+|
T Consensus 115 ---~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 115 ---EFEPVMDEWSTDENFWLRRTAILHQLKYKEK---T------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred ---hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---c------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 2345667778899999999998763332221 1 122333334445678888899999999999999999
Q ss_pred hhhhhhHhH
Q 000051 2549 SAIMVHVAL 2557 (2612)
Q Consensus 2549 ~~v~~~l~~ 2557 (2612)
+.|.+++..
T Consensus 183 ~~V~~fl~~ 191 (208)
T cd07064 183 DWVRDFVAA 191 (208)
T ss_pred HHHHHHHHH
Confidence 999988854
No 287
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=58.92 E-value=91 Score=33.82 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=55.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhc
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD---QVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D---~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
..+..|.+-+++. +++++..|+.++..+...+|..|...+. +.+..+...+.. .++.||+.+...+......++
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5777888888887 8999999999999999999987765543 344455566554 467888887777766655443
No 288
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=58.69 E-value=61 Score=45.25 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHH
Q 000051 2155 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 2234 (2612)
Q Consensus 2155 l~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l 2234 (2612)
+..|+..++.+|..+.+.+-..+...+...... -++..+.+..-..+... ....+.|+..| +-..++..+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~y~~~t~s~~------~~~il~~~~~P-~~K~~~~~l 75 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP---WLVNGLVDYYLSTNSQR------ALEILVGVQEP-HDKHLFDKL 75 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---HHHHHHHHHHhhcCcHH------HHHHHHhcCCc-cHHHHHHHH
Confidence 556777888888888877777777766543221 22333333222111110 00123344333 112233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch-hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHH
Q 000051 2235 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 2313 (2612)
Q Consensus 2235 ~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v-~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpq 2313 (2612)
-+.+. .+.-|..+...|+.++..-++ .+...+ ..++.-|++.|....+..+...|+.+|..|+-.++..+.+|+|.
T Consensus 76 ~~~~~--~~~~Rl~~L~Ll~~~v~~qp~-~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 76 NDYFV--KPSYRLQALTLLGHFVRSQPP-WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHc--CchhHHHHHHHHHHHHhcCCc-hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 33333 456789999999999987763 333222 35566677777655577788899999999999999999999999
Q ss_pred HHHHHHHHh
Q 000051 2314 LQTTFIKCL 2322 (2612)
Q Consensus 2314 L~~~~~k~L 2322 (2612)
|..+|.+.+
T Consensus 153 Lf~If~Rl~ 161 (668)
T PF04388_consen 153 LFNIFGRLL 161 (668)
T ss_pred HHHHHHHHH
Confidence 999999876
No 289
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=58.31 E-value=38 Score=35.57 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhHHHHH------HHHhhhcCCHHHHHHHHHHHHHHHHh
Q 000051 2313 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGD------LLSSLQVSDAGIREAILTALKGVLKH 2379 (2612)
Q Consensus 2313 qL~~~~~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~------Ll~~l~~~d~~vr~~~l~AL~~vi~~ 2379 (2612)
+++..+++.|..+ ++.+-..|..-+|.++...|+-..++.. ++..+..+|++||+.++.|+..++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 4566667777554 6777778888999999888887666644 56777788999999999999887653
No 290
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.10 E-value=13 Score=31.21 Aligned_cols=40 Identities=23% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHH
Q 000051 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523 (2612)
Q Consensus 1482 L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL 1523 (2612)
|+.+....|..+.. +.+...+...+.|+++.||++|...+
T Consensus 3 l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44555555554432 47778888899999999999998753
No 291
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.66 E-value=78 Score=34.68 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=53.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCC--CHH--HHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQ--VVA--VREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~--~~~--VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+.+. ++++..-|+.++..+...+|..|...+. .++..+...+.++ .+. ||+.+...+......+
T Consensus 42 ea~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6778888888886 8999999999999999999977766553 4555555554432 222 8888777766665544
No 292
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=56.95 E-value=6.7e+02 Score=34.24 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=61.0
Q ss_pred HHHHhhhhcccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhc-ccchh-ccHHHHHHHHHHHhcCCChhHHHHH
Q 000051 2097 AAETVTLVIDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNS-KLYLV-DEAPNMISTLIVLLSDSDSTTVAAA 2173 (2612)
Q Consensus 2097 al~~l~~~~~~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~~~~-~~~~~-~~~~~il~~L~~ll~d~d~~V~~~a 2173 (2612)
.++.++..++.+.+..++..+...++ ++...+|.+.+..++.+.+.. +.+.. +..+.+..-.-.++.|.+--+...|
T Consensus 464 l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~A 543 (559)
T PF14868_consen 464 LLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHA 543 (559)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHH
Confidence 33344445556667777777777774 345568889999888887642 22333 3445555555556789999999999
Q ss_pred HHHHHHHHhhcCc
Q 000051 2174 WEALSRVVASVPK 2186 (2612)
Q Consensus 2174 ~~aL~~l~~~~~~ 2186 (2612)
.+|.+.+....+.
T Consensus 544 LeAF~~FAe~T~~ 556 (559)
T PF14868_consen 544 LEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHhccCCc
Confidence 9999999876543
No 293
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=56.24 E-value=39 Score=33.94 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000051 2284 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2612)
Q Consensus 2284 ~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L 2340 (2612)
.+|.+|..|...|+.++++.+......-|.+..++.+.+.|+ +...+--|..+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999988776667789999999999997 566677777777766
No 294
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=55.58 E-value=3.4e+02 Score=38.25 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchH-----HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCChhH-----HHHHHHH
Q 000051 2288 VKSAILSTLSIIIRKGGIALKPFLP-----QLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVDP-----LVGDLLS 2356 (2612)
Q Consensus 2288 vk~~al~~L~~L~~~~~~~l~p~lp-----qL~~~~~k~L~d-~~~~vR~~Aa~aLg~L~~~~~~~~~-----~l~~Ll~ 2356 (2612)
....++.+|..++.+.|.--.-|-. ...+.|...+.. .++.+...|...+..+...++-+.. .+..|++
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4456788888888766532111111 112223333333 2556777777776666444333322 3455666
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh--CChh---HHHHH
Q 000051 2357 SLQVSDAGIREAILTALKGVLKHAGKSVSSAVK-IRVYSVLKDLVYHDDDHVRVSAASILGIMSQC--MEDG---QLADL 2430 (2612)
Q Consensus 2357 ~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~-~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~--~~~~---~~~~~ 2430 (2612)
.+.+ .+..|+.+++.|+.+-+.. .-..+... ..++.++...+....+..|..+|+++|++... .++. .+..+
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF 1898 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF 1898 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh
Confidence 6654 4678998888888765421 11111111 12233333445567889999999999998642 2222 15566
Q ss_pred HHHHH
Q 000051 2431 LQELL 2435 (2612)
Q Consensus 2431 l~~ll 2435 (2612)
+++.+
T Consensus 1899 LP~~f 1903 (2235)
T KOG1789|consen 1899 LPEIF 1903 (2235)
T ss_pred chHHH
Confidence 66654
No 295
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=55.28 E-value=5.5e+02 Score=32.72 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=92.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cccc---hhhH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKL-GRLF---EPYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~-~~~~---~~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~ 1449 (2612)
+++..|...+..- +...|..+...+..+...- +... ..|+ ++++..++.+..+++ +--.+...++.|+.
T Consensus 76 dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ial~~g~mlRec~k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IALNCGDMLRECIK 152 (335)
T ss_dssp THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--THHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--ccchHHHHHHHHHh
Confidence 4555566666554 6888888888888887653 3322 2344 467777777776553 33334444444433
Q ss_pred hh--cHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc----hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHH
Q 000051 1450 QL--SAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2612)
Q Consensus 1450 ~l--~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p----~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2612)
.- ...-. ...+-.+++..+.+...+-..|...+..+....+ +.+...+..++.....++..++--.|..+.+-
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 21 01000 2233345667777888888888888877765443 34566677888888889999999999999999
Q ss_pred HHHHHhh
Q 000051 1523 LQQVGSV 1529 (2612)
Q Consensus 1523 L~~l~~~ 1529 (2612)
|+.+...
T Consensus 233 L~ellld 239 (335)
T PF08569_consen 233 LGELLLD 239 (335)
T ss_dssp HHHHHHS
T ss_pred HHHHHHc
Confidence 9888753
No 296
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=53.82 E-value=87 Score=32.95 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=49.0
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH--HHHHHHH-----Hc-CCCCHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ--MLPLLLV-----AF-SDQVVAVREAAECAARA 1446 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~--ilp~ll~-----~l-~D~~~~VR~aa~~al~~ 1446 (2612)
.++..|.+-+.++ +|++..-|+..+..+...+|..|..++.. .+..++. .. .+.+..||+.+...+..
T Consensus 37 ~~~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 37 EAVDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 6888888888887 89999999999999999999877776642 2222222 11 24577888887665543
No 297
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=53.24 E-value=59 Score=35.55 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=54.1
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
.+-..+..+|.+.+++||..|.+||-..- +|.+.+.-+.|...+.|. ..|+.+..+....-.+.+.+.+-+.++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 44455678899999999999999998754 466666666677766553 345444444322222235666777888
Q ss_pred HHHHHhh
Q 000051 1579 PIVHRGL 1585 (2612)
Q Consensus 1579 p~L~~~l 1585 (2612)
|.+.+.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 8888865
No 298
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=52.86 E-value=38 Score=33.57 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=55.1
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 2338 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg 2338 (2612)
..+..|+..++....+.++|..++.++..++...+..++.--+.+..++-.+..|.++.+-..|..++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 345667777766656889999999999999998888888877888888888888887777777766653
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.84 E-value=1.5e+02 Score=32.47 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH--hHHHHHHHhhhcC-Ccch---hhhhHHHHHHHHhc
Q 000051 2513 VVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKD-GSTP---VRLAAERCAVHAFQ 2586 (2612)
Q Consensus 2513 ~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l--~~l~p~l~~~~~~-~~~~---vk~aae~~~~~~~~ 2586 (2612)
...+.+..+.+.+.+.++.+...|+.++..+.++++..+...+ ..++..|.+.+.. +..+ ||.-+...+..--.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3466777777788899999999999999999999987775544 3466667775554 2333 88666655444444
Q ss_pred ccccchhhh-HhhhhhccC
Q 000051 2587 LTRGIIYSR-STKIYNRLG 2604 (2612)
Q Consensus 2587 ~~~~~~~~~-~~~~~~~~~ 2604 (2612)
-.+++..+. +.+.|+.|.
T Consensus 119 ~f~~~~~~~~i~~~y~~Lk 137 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYKRLK 137 (140)
T ss_dssp HTTTSTTGHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHH
Confidence 444555555 777777653
No 300
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.72 E-value=2.2e+02 Score=31.34 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=63.4
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhcc--HHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE--APNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~--~~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+.+..+.+..|.+.+++.++.+...|+.++..+.+++|..+-.. -.+++..|..++. ..+..|++.+...+......
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999988665433 2566777777775 56788999888888877766
Q ss_pred cCc
Q 000051 2184 VPK 2186 (2612)
Q Consensus 2184 ~~~ 2186 (2612)
...
T Consensus 116 f~~ 118 (142)
T cd03569 116 FRN 118 (142)
T ss_pred hCC
Confidence 544
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.27 E-value=1.2e+02 Score=33.01 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=54.3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQV--VAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~--~~VR~aa~~al~~i~~~l 1451 (2612)
..+..|.+-+.++ ++++..-|+..++.+...+|..|...+. ..+..+...+.++. +.||+.+...+......+
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 6778888888876 7999999999999999999987766554 46666666665532 348887777666665544
No 302
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=52.06 E-value=5.8e+02 Score=35.02 Aligned_cols=211 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCC-cChHHHHHHHHHHHHhhcCCCH------------HHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Q 000051 2369 ILTALKGVLKHAGKS-VSSAVKIRVYSVLKDLVYHDDD------------HVRVSAASILGIMSQCMEDGQLADLLQELL 2435 (2612)
Q Consensus 2369 ~l~AL~~vi~~~g~~-~~~~~~~~i~~~L~~~l~~~~~------------~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll 2435 (2612)
.+.+|-+|+...+.. +.++....+.+.+.+.+...|. .+-+..|++||.|+..-=...-..++.++-
T Consensus 12 ~CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~ 91 (552)
T PF14222_consen 12 LCRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELE 91 (552)
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Q ss_pred hhcCCCCchhhHHHHHHHHHH----HhhCCccccCCchhHHHHHHHHhhhccC--ChhHHHhHHHHHHHHHhhhhc----
Q 000051 2436 NLASSPSWAARHGSVLVFATF----LRHNPSAISMSPLFLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQIQ---- 2505 (2612)
Q Consensus 2436 ~~~~~~~~~~~~~~~~~l~~~----l~~~p~~~~~~~~~~~i~~~l~~~~~~~--~~~ir~~a~~alg~ll~~~~~---- 2505 (2612)
......+ .........+.-+ ++..|..-+.... +++..+.+...+. +..++-+-...+..+|.--..
T Consensus 92 ~~~~~~~-~~~~~~~~li~GMr~lrlk~~p~e~~e~s~--~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~ 168 (552)
T PF14222_consen 92 KLRKDSN-DAESKIELLIMGMRYLRLKMYPEEAFEESA--EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATA 168 (552)
T ss_pred HhcccCC-chHHHHHHHHhhcceeeecCCCHHHHHHHH--HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccc
Q ss_pred --cCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHh-HHHHHHHhhhcCCcchhhhhHHHHHH
Q 000051 2506 --SGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA-LFGPALAECLKDGSTPVRLAAERCAV 2582 (2612)
Q Consensus 2506 --~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~-~l~p~l~~~~~~~~~~vk~aae~~~~ 2582 (2612)
..|.-.+.+..+.+........ +...--.-=.+.-.++-..++....+.. .++..+..-+||+ +.|.-+..|+.
T Consensus 169 evn~P~W~~~v~~i~~~~~~~~~K-~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~ 245 (552)
T PF14222_consen 169 EVNHPKWKEAVETIYPRAAKMMSK-PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLS 245 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHhC-cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHH
Q ss_pred HHh
Q 000051 2583 HAF 2585 (2612)
Q Consensus 2583 ~~~ 2585 (2612)
+|+
T Consensus 246 RLl 248 (552)
T PF14222_consen 246 RLL 248 (552)
T ss_pred HHH
No 303
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.92 E-value=1.6e+03 Score=37.21 Aligned_cols=1138 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCc----chhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC--CcchHh
Q 000051 1227 DTNADVRGRMLNAGIMIIDKHGR----DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHA 1300 (2612)
Q Consensus 1227 d~~~~VR~~~~~a~~~~i~~~g~----~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~--~~~~~~ 1300 (2612)
|...+.|..++.-...+++.+-. ..++.++|.|..++....+.-.......+.-..++..+-+....+ .|+...
T Consensus 18 ~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~ 97 (3550)
T KOG0889|consen 18 NLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQE 97 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHH
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhc--------------------CCChHHHHHHHH
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK--------------------SDKYGERRGAAF 1360 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~--------------------~~~~~~R~~Aa~ 1360 (2612)
++..++..+...++|.-..+.+.+..+.+..+...+..+..++....+ .++...-..|.+
T Consensus 98 ~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~~~~~~v~~~f~~p~~~~~~~~~~~~~~~~ 177 (3550)
T KOG0889|consen 98 LLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYKNMPNLVNEGFIEPKSTEEEPLNHPESADS 177 (3550)
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcCcCCCCCchhhhhh
Q ss_pred HHHHHHhhhCcchhhhhc------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000051 1361 GLAGVVKGFGISSLKKYG------------IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2612)
Q Consensus 1361 ~L~~l~~~lg~~~l~~~~------------i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~ 1428 (2612)
........-......... ++=.+.+.-...-....-+-.=..+..+.-..++ .||-..+....+..
T Consensus 178 ~~~~~~~~~~e~~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~v~~~d--~~~~~~~~~~~~~l 255 (3550)
T KOG0889|consen 178 SLTEYHKIGVEQLLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLILNFLSVRVPD--SPYWMFLSDGTLQL 255 (3550)
T ss_pred hcCcccccCccccCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCC--CccchhHHHHHHHH
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCC---------ChhhHHHHHHHHHHHHhhCchhhhhh-hc
Q 000051 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------AWRTKQSSVQLLGAMAYCAPQQLSQC-LP 1498 (2612)
Q Consensus 1429 l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~---------~w~~r~~a~~~L~~ia~~~p~~l~~~-L~ 1498 (2612)
+.|--.+.-..--+.+-+.-..++.+--+.++|.+=..++.. .-..|--|...|.++..+.-+.+... +.
T Consensus 256 l~~CP~el~~~RkElL~a~rhilst~~k~~f~P~id~L~de~iLiG~G~t~~e~lRplays~LAdllHhvR~~L~~~~i~ 335 (3550)
T KOG0889|consen 256 LYDCPSELLSLRKELLVATRHILSTDLKRGFLPMIDKLLDERILIGTGFTAQESLRPLAYSMLADLLHHVRESLSLTQII 335 (3550)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhHHHhccceeecCCcchhhhccHHHHHHHHHHHHHHHhcCCHHHHH
Q ss_pred hhHHHHhhhhcCC--CHHHHHHHHHHHHHHHhhcCC--------------hhHhhHHHHHHhhcCCCChhHHHHHHHHHh
Q 000051 1499 KIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIKN--------------PEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~~--------------~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~ 1562 (2612)
.++-...+.+.|+ ...++..+++-+-++++.+.. .-++.++..+.....--+..+-.....=+.
T Consensus 336 ~~i~l~s~~l~D~~l~~~iq~m~akLllNlve~i~~~~~~s~~~~~~lL~~il~~~v~kf~t~~~~~~~~~~~~~~~e~~ 415 (3550)
T KOG0889|consen 336 KVISLFSRNLHDSSLSSGIQTMSAKLLLNLVERIEELGCQSVDRARDLLLRILESFVSKFKTFARYRDSAQFQKCKYEIK 415 (3550)
T ss_pred HHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Q ss_pred ccccccCCh---------------hhHhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHhh-ccCCCCcchhhHhhhHHHHH
Q 000051 1563 TTFVNTVDA---------------PSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCS-LVTEPKDMIPYIGLLLPEVK 1625 (2612)
Q Consensus 1563 ~~~~~~i~~---------------~~l~~iip~L~~~l~d~s~~vr~~a~-~~l~~l~~-~~~~~~~l~~~l~~ll~~L~ 1625 (2612)
..-...-.+ .....+++.+..|++.--|..+..-. ..-+.+.. ....+.....|.+..-+...
T Consensus 416 ~~~~~~~~~~~~~P~~~~~~~~kv~d~~~L~k~l~~G~Kti~~~i~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~me 495 (3550)
T KOG0889|consen 416 IGELKNSLPKIERPAEVPSFGSKVNDCRFLFKTLVSGLKTIIWGIKVAKSPPPSGFVFNRLWKYVMHTCSYISLVRDAME 495 (3550)
T ss_pred HhhhccccccCCCccccCcccccchhHHHHHHHHHhhhHHhhHHhhhccCCCccccccchhhhhhhHHHHHHHHHHHHHh
Q ss_pred HHhc----------------CCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHH---
Q 000051 1626 KVLV----------------DPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGL--- 1682 (2612)
Q Consensus 1626 ~~L~----------------d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L--- 1682 (2612)
.+-. .+...--+.+.+-++.+...+.+. .|..-+|.+++.+.+.............=
T Consensus 496 ~l~~~~~~~~~~~~~~~~~~s~r~keEke~lE~fa~vF~~i~~s~f~eIfe~~~p~iferi~~n~~l~~i~n~~l~n~~t 575 (3550)
T KOG0889|consen 496 VLEIYPVNKEDNYDNPSNSSSPRTKEEKEALEEFATVFEMIDPSVFYEIFETNSPFIFERILKNNALFHIANTLLSNEST 575 (3550)
T ss_pred HhhhhheeeccccccccccccccchhHHHHHHHHHHHHHHhCcHhHHHHHHHhhHHHHHHHhccCcHHHHHHHHHhCccc
Q ss_pred HHHHHHhChhhHHhHhHHHHHh-ccCCChhhH--hHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHH
Q 000051 1683 SEVLAALGTVYFEHILPDIIRN-CSHQRASVR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALG 1759 (2612)
Q Consensus 1683 ~~i~~~~g~~~l~~llp~l~~~-~~~~~~~vR--~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~ 1759 (2612)
+-.+...-..++-.=+..+... ....+-.+| .-++.....++.....-..||+++++...++......+. ..-..
T Consensus 576 s~~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~sv~~f~~~nervl~phv~~Ii~~smela~~a~ep--lnYf~ 653 (3550)
T KOG0889|consen 576 SVNFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFGSVSKFPSENERVLRPHVHDIISTSMELATTAPEP--LNYFQ 653 (3550)
T ss_pred chhHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhhhhhcccccchhhcccchhHHHHHHHHHHhcCCcc--hhHHH
Q ss_pred HHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhCh
Q 000051 1760 AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839 (2612)
Q Consensus 1760 al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~ 1839 (2612)
-++.+...+|.-..+.+..++...+ ...++.+..+.........+
T Consensus 654 LLraLFRsigGg~~d~ly~e~lplL--------~~lLe~ln~l~~~~~s~~mk--------------------------- 698 (3550)
T KOG0889|consen 654 LLRALFRSIGGGAFDSLYREVLPLL--------PNLLEILNHLLSSFHSQGMK--------------------------- 698 (3550)
T ss_pred HHHHHHHHhhccchHhHHHHHHHHH--------HHHHHHHHHHhhccCccchH---------------------------
Q ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000051 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL 1916 (2612)
Q Consensus 1840 ~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~---~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~ 1916 (2612)
++...++-..| ..+.+|+|.++..++.+++.+
T Consensus 699 --------------------------dLfvELclTvPvRLS~Llpylp~LM~PLv~aLkgs------------------- 733 (3550)
T KOG0889|consen 699 --------------------------DLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKGS------------------- 733 (3550)
T ss_pred --------------------------HHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcCC-------------------
Q ss_pred chhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHH--HHHHHHHHHHHHH
Q 000051 1917 GERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV--RESAGLAFSTLFK 1994 (2612)
Q Consensus 1917 ~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~V--r~~A~~al~~l~~ 1994 (2612)
++.+...+..+.-.+.+..|+-+.+.+..+.+.+..+|-+....+ -.....|+.-+.+
T Consensus 734 --------------------~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGK 793 (3550)
T KOG0889|consen 734 --------------------PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGK 793 (3550)
T ss_pred --------------------HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q ss_pred HhC-----------------------------------hhhhhhhHHHHHHhccCCCcc----hHHHHHHHHHhhhcccc
Q 000051 1995 SAG-----------------------------------MQAIDEIVPTLLHALEDDQTS----DTALDGLKQILSVRTTA 2035 (2612)
Q Consensus 1995 ~~g-----------------------------------~~~~~~ilp~Ll~~L~~~~~~----~~al~~L~~il~~~~~~ 2035 (2612)
-.| .-.+++.+..-.+.+.+.... ..+...+...+
T Consensus 794 lgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~------ 867 (3550)
T KOG0889|consen 794 LGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDL------ 867 (3550)
T ss_pred hcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHH------
Q ss_pred cccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHH--HHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHH
Q 000051 2036 VLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPA--LLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESL 2113 (2612)
Q Consensus 2036 vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~--Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~l 2113 (2612)
+...... .........+....+......++...+. +....+..+...|..-..++-.++.+.....+...
T Consensus 868 ------~~~~~~~--~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~ 939 (3550)
T KOG0889|consen 868 ------LLMVNLS--ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDE 939 (3550)
T ss_pred ------HHHHhhh--ccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhh
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHH-----------HHHHHHHHhcCCChhHHHHHHHHHHHHHh
Q 000051 2114 VSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN-----------MISTLIVLLSDSDSTTVAAAWEALSRVVA 2182 (2612)
Q Consensus 2114 l~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~-----------il~~L~~ll~d~d~~V~~~a~~aL~~l~~ 2182 (2612)
-...+..+ +|..++.++...+...+..-...... ++.+|+.++...+..++.+...++..+..
T Consensus 940 a~~~~~~i------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~ 1013 (3550)
T KOG0889|consen 940 AQDFLEAI------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFS 1013 (3550)
T ss_pred hHHHHHHH------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Q ss_pred hcCc---cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 000051 2183 SVPK---EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEV 2259 (2612)
Q Consensus 2183 ~~~~---~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~ 2259 (2612)
.... ........++.+.+ ++-+.+...+..+-.|.....+|+.++..
T Consensus 1014 ~~~~~l~~~~~~~~lpi~~~l------------------------------~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 1014 TSTLILGSPERAFKLPMFEYL------------------------------LEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHhhcCcchhhccchHHHH------------------------------HHHHHHHhccHhHHHHcCCCceeeeehhh
Q ss_pred cChhhhhhchhhhhHHHHHHhcCCCCHhHHH----HHHHHHHHHHHhcCCCccC------chHHHHHHHHHHhcCCCHHH
Q 000051 2260 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKS----AILSTLSIIIRKGGIALKP------FLPQLQTTFIKCLQDSTRTV 2329 (2612)
Q Consensus 2260 ~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~----~al~~L~~L~~~~~~~l~p------~lpqL~~~~~k~L~d~~~~v 2329 (2612)
.+...+..+...+..++..++.+. ..++.. .+-..+-.+.+.+-..... ....++..+...+.++|+.|
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~-~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDT-ESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCC-ccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Q ss_pred HHHHHHHHHHHHhc-cCChhHHHHHHHHhhhcC---------CHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHh
Q 000051 2330 RSSAALALGKLSAL-STRVDPLVGDLLSSLQVS---------DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2612)
Q Consensus 2330 R~~Aa~aLg~L~~~-~~~~~~~l~~Ll~~l~~~---------d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2612)
|..+-.+|..++.. +..+.+++..+-+.+-.+ .-..+-..+++...++.-.+..+
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f--------------- 1207 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLF--------------- 1207 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCccc---------------
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccC-CchhHHHHHHHH
Q 000051 2400 VYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLK 2478 (2612)
Q Consensus 2400 l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~-~~~~~~i~~~l~ 2478 (2612)
.-...-..--.-++.++....++.+. +.+.......+.....|..+.-.+....+..+...-+ ..+.++++..++
T Consensus 1208 ---~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1208 ---DFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred ---CchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Q ss_pred hhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2479 SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2479 ~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
+.+..+.+++.+.+..++...+.... ....+.+...++++--+-+|-|+++..++..+++
T Consensus 1284 k~l~~~~~Ei~~~~~~~l~~v~~~~~-------~~~ke~lq~~lrplL~~l~d~~~lsv~~l~~ls~ 1343 (3550)
T KOG0889|consen 1284 KSLYKRSSELIEVALEGLRKVLAQDV-------KLPKELLQSHLRPLLMNLSDHNNLSVPGLEGLSR 1343 (3550)
T ss_pred HHHcCChHHHHHHHHHHHHhhhhccc-------cccHHHHHhhHHHHHHhhhHhhhhhHHHHHHHHH
No 304
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=50.77 E-value=1.8e+02 Score=40.66 Aligned_cols=131 Identities=6% Similarity=0.108 Sum_probs=79.8
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH----HHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV----LPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i----lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
+.|....++..+++...|+.+.=|+..--+--+.. .+.-+..| ...+...+..+....-.-+++++..+.-+|
T Consensus 11 lR~RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAas---np~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C 87 (819)
T KOG1877|consen 11 LRPRYKKLVDNIFPRSPEDGPNKSKMEKLTFYAAS---NPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQAC 87 (819)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccccHHHHHHHHhh---ChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHH
Confidence 44556666666666666665554443211111110 00111111 122223344444445556788888888888
Q ss_pred chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-----hHhhHHHHHHhhcC
Q 000051 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLT 1547 (2612)
Q Consensus 1490 p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~ivp~Ll~~l~ 1547 (2612)
.+|+...-..++..+.++|.+++++++-.++.++-.|+..-.+. .++.+++.+.+...
T Consensus 88 ~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~h 150 (819)
T KOG1877|consen 88 KEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCH 150 (819)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhh
Confidence 88876666778888888999999999999999999999655432 24667777777654
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=50.24 E-value=1.2e+02 Score=32.82 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=65.5
Q ss_pred CchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch--hhhhHHHHHHhcCCCCHh-HHHHHHHHHHHHHHh
Q 000051 2226 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV--IPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2226 ~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v--~~i~~pLi~~l~~~~~~~-vk~~al~~L~~L~~~ 2302 (2612)
+....+..+.+.+.++++.+...|...+..+++++| ..+...+ ..++..|.+++.++.+.. |+..++..+......
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344567778888999999999999999999999998 4443333 346677888888776655 999999999888876
Q ss_pred cCCCccCchHHHHHH
Q 000051 2303 GGIALKPFLPQLQTT 2317 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~ 2317 (2612)
.+. .|-++.+..+
T Consensus 113 f~~--~~~~~~i~~~ 125 (133)
T smart00288 113 FKN--DPDLSQIVDV 125 (133)
T ss_pred HcC--CCCchHHHHH
Confidence 644 3444544443
No 306
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=49.32 E-value=1e+03 Score=34.06 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCCCch--hhHHHHHHHHHHHhhCCcccc---CCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000051 2427 LADLLQELLNLASSPSWA--ARHGSVLVFATFLRHNPSAIS---MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2612)
Q Consensus 2427 ~~~~l~~ll~~~~~~~~~--~~~~~~~~l~~~l~~~p~~~~---~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2612)
+..++++++.....+++. .-.....++..+++..|...- ..++.++++..+. -.+..+-..|++.+-.+-.
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~----~~n~s~P~SaiRVlH~Lse 2076 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC----LQNTSAPRSAIRVLHELSE 2076 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH----hcCCcCcHHHHHHHHHHhh
Confidence 344555554433333222 122334466667777775432 2355555544332 2333333566666555543
Q ss_pred hhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchh-hhhhH-hHHHHHHHhhhcCC---cchhhhh
Q 000051 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA-IMVHV-ALFGPALAECLKDG---STPVRLA 2576 (2612)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~-v~~~l-~~l~p~l~~~~~~~---~~~vk~a 2576 (2612)
.....+. -...+.+..++..+...- +.--+|+.+++.+-++..+. |.+-| ..++|-+++.+... +.---.|
T Consensus 2077 n~~C~~A---MA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aa 2152 (2235)
T KOG1789|consen 2077 NQFCCDA---MAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAA 2152 (2235)
T ss_pred ccHHHHH---HhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhH
Confidence 3211000 000122333444333222 22238999999988876544 55544 45788888876542 2222234
Q ss_pred HHHHHHHHhcccccchhhh--HhhhhhccC
Q 000051 2577 AERCAVHAFQLTRGIIYSR--STKIYNRLG 2604 (2612)
Q Consensus 2577 ae~~~~~~~~~~~~~~~~~--~~~~~~~~~ 2604 (2612)
++.-++..++.--....+. ...||+++.
T Consensus 2153 s~A~Iv~aLk~~~~~l~vg~kV~EILd~S~ 2182 (2235)
T KOG1789|consen 2153 ARAEIVDALKSAILDLKVGQKVAEILDKSP 2182 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444555544433333222 777887764
No 307
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=49.29 E-value=29 Score=28.77 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=26.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1619 ~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
..+|.|.+++.++++++++.|+.+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999886
No 308
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=49.26 E-value=8.6e+02 Score=33.21 Aligned_cols=221 Identities=18% Similarity=0.173 Sum_probs=117.1
Q ss_pred hHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh----HHHHHHHHHHhh-----cC-C----ChHHHHHHHHHHH
Q 000051 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLM-----KS-D----KYGERRGAAFGLA 1363 (2612)
Q Consensus 1298 ~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~----~~li~~ll~~L~-----~~-~----~~~~R~~Aa~~L~ 1363 (2612)
.+.+++.+...+++.+..+|..+++.+.......+... -++++-+.+.|. .. + +.-...++...++
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 45566777777777788999999998877776665432 223332222221 10 0 1234555555555
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHH-HcCCCCH
Q 000051 1364 GVVKGFGISSLKKYGIAATLREGLAD-------RNSAKRREGALLAFECLCEKLGRLFEPYVIQ-MLPLLLV-AFSDQVV 1434 (2612)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~i~~-------~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~-ilp~ll~-~l~D~~~ 1434 (2612)
+++..+.+..+. -+.+.+.+.+.- -+....|+++++.+-.+..+..+.+.+-+.. +...++. .+-|++-
T Consensus 324 -la~~~~id~~d~-~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel 401 (993)
T COG5234 324 -LAGAGLIDYSDC-LILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL 401 (993)
T ss_pred -Hhhccccchhhh-hhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence 444444433321 133444433322 1234678888887777776644444444433 3444444 6889999
Q ss_pred HHHHHHHHHHHHHHHh-hcHHhHHhHHHHHHhhhcCCChh--hHHHHHH-HHHHHHhhCchhhhhhhchhHHH-Hhhhhc
Q 000051 1435 AVREAAECAARAMMSQ-LSAQGVKLVLPSLLKGLEDKAWR--TKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPK-LTEVLT 1509 (2612)
Q Consensus 1435 ~VR~aa~~al~~i~~~-l~~~~v~~ilp~Ll~~L~~~~w~--~r~~a~~-~L~~ia~~~p~~l~~~L~~ivp~-L~~~L~ 1509 (2612)
.+|.+|..++-....+ .+.......+ .++ +|. .|...|. .+.....+.| .+..+- +++.. |++-|.
T Consensus 402 ~vRr~a~Aal~E~iGR~~s~a~g~~lI-slI------N~~sv~r~s~csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~ 472 (993)
T COG5234 402 NVRRAATAALFEVIGRHASIADGLSLI-SLI------NYVSVTRISNCSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQ 472 (993)
T ss_pred hhhhHHHHHHHHHhccCCCcccchhhh-hhc------cceecchhhhcchHHHHHhcCcc-ccchHH-HHHHHHHHhhhh
Confidence 9999998888777665 2221111111 122 331 1222222 1112222223 222222 33332 555566
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 000051 1510 DTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
+-+++|+.....+|.++.+.
T Consensus 473 H~~~~~k~~~~y~l~~liK~ 492 (993)
T COG5234 473 HWDVKVKQLSAYSLRQLIKY 492 (993)
T ss_pred ccchhhhhhccccHHHHhcC
Confidence 67888998888888888653
No 309
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=49.22 E-value=4.6e+02 Score=35.40 Aligned_cols=321 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ 1420 (2612)
..++.-..+++....-+|..+++-.-.+.....- +.+..|.+.+++. +...|.++++.++....+..+ .+
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d---palALLsdyv~~~-~s~~ri~aIlGLglayaGsq~------e~ 487 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNECD---PALALLSDYLQSS-SSIHRIGAILGLGLAYAGSQR------EE 487 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccccC---HHHHHHHHhccCC-CceeehHHhhhhHHhhcCCch------HH
Q ss_pred HHHHHHHHcCCCCHH--HHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1421 MLPLLLVAFSDQVVA--VREAAECAARAMMSQLSAQGV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~--VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
++..+.+.+.|.+.. |.--|.-+++.++--.-...+ ..++..+++.-+ +..-.--+--...|+-+..+-
T Consensus 488 V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgk------- 560 (878)
T KOG2005|consen 488 VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGK------- 560 (878)
T ss_pred HHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcc-------
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHH---HHHHHhccccccCChhh
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS---LDILLQTTFVNTVDAPS 1573 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~a---l~~L~~~~~~~~i~~~~ 1573 (2612)
.+-+......+..-+..+|+.+--.+..++ ..+...+-.+-...+..+........+. +..|+- ..+.--++-.
T Consensus 561 -qe~~d~~~e~~~~i~~~~~~~~~~lv~~ca-YaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgi-AliAMgeeig 637 (878)
T KOG2005|consen 561 -QESVDAVVETIKAIEGPIRKHESILVKSCA-YAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGI-ALIAMGEEIG 637 (878)
T ss_pred -cchHHHHHHHHHHhhhHHHHHHHHHHHHhh-ccccCceEEechhhhhhhcCCCccchhhhccchhhhh-hhhhhhhhhh
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1574 l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
....+..+...+.-.++.+|+..--+++-++- .+|+- .++..|.+...|.+.+|-..++-++|-+...-...
T Consensus 638 ~eM~lR~f~h~l~yge~~iRravPLal~llsv--SNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 638 SEMVLRHFGHLLHYGEPHIRRAVPLALGLLSV--SNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc--CCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Q ss_pred CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000051 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2612)
Q Consensus 1654 ~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~ 1689 (2612)
.+..++..+...--.+...---...+|+|..+.++.
T Consensus 710 Rla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGt 745 (878)
T KOG2005|consen 710 RLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGT 745 (878)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCc
No 310
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=49.05 E-value=2.1e+02 Score=31.46 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHH-HHHHcCC---CCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFSD---QVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~-ll~~l~D---~~~~VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+.+.+++++..-|+..++.+.+.+|..|...+. +.+.- +...+.+ ....|++.....+......+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 567778777765447888888999999999999987776554 45554 5555542 34578887776666665544
No 311
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=47.91 E-value=30 Score=29.07 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECA 1443 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~a 1443 (2612)
.+...+...+.|+++.||++|.+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 678888889999999999998764
No 312
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=46.73 E-value=1.2e+02 Score=31.32 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCC
Q 000051 282 LSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNP---DALEAMFYAIKAVIGGS 339 (2612)
Q Consensus 282 ls~~~~~l~~~l~s~lkS~~~~vR~~a~~~~~~l~~~~~d~---~~~~~~~~~i~~~l~~~ 339 (2612)
+..++..++--+.+.+-+-.+.||..|+.++..|...|.+. ....+++++.++.++..
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 44456778889999999999999999999999999998776 35558999999998874
No 313
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=46.19 E-value=1.5e+03 Score=35.07 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=75.8
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2345 ~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
.++..++.-.-..+.+.++.++......+..+.... ..-+.+.|+..|..++-+.++....+|...|..|+...+.
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 333333333333445566666666666666666543 1234556665555554334444445666777777765443
Q ss_pred hHHH---HHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000051 2425 GQLA---DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2612)
Q Consensus 2425 ~~~~---~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2612)
.+. .++..+|..+..=+....+..+..++.+.-..+.. .....+++--.+.+.+.+.++..+.-++.+.-.++.
T Consensus 507 -~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~--~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 507 -ELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSS--SSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp -HHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCccc--chhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 222 33333343333222222222333343333222211 224567788888888999998888887776666655
Q ss_pred h
Q 000051 2502 H 2502 (2612)
Q Consensus 2502 ~ 2502 (2612)
+
T Consensus 584 ~ 584 (1426)
T PF14631_consen 584 H 584 (1426)
T ss_dssp H
T ss_pred H
Confidence 4
No 314
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=46.14 E-value=54 Score=33.00 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCC--ChhHHHHHHHHHHHH
Q 000051 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDP--SASRRQGVCIGLSEV 1950 (2612)
Q Consensus 1896 ~~~~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~--~~~vR~~a~~aL~~l 1950 (2612)
+.++..|..|+..++.++++.+.. ..+.+...+.+.+.|+ ...++.|+..+|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998854 5788888888888865 456789999998876
No 315
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=45.64 E-value=83 Score=35.26 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh--chhHHHHhhhhc
Q 000051 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT 1509 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L--~~ivp~L~~~L~ 1509 (2612)
..+++|..+.-++..+++.......+.+-..+-..+.+........++.++..+.-..|+....-+ +++++.+...+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 456799988888888864333333333344444444444444666777777777666666543332 467777777777
Q ss_pred --CCCHHHHHHHHHHHHHHHhhc--CChhHhhHHHHHHhhcC
Q 000051 1510 --DTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLT 1547 (2612)
Q Consensus 1510 --D~~~~VR~aA~~aL~~l~~~~--~~~~i~~ivp~Ll~~l~ 1547 (2612)
..+..++.+++++|..-+..- ++.-.+..++.|.+...
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 567888888888877554321 11123556666666663
No 316
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.75 E-value=1.8e+02 Score=34.35 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~ 1492 (2612)
..+.+.....++++-+|++++.++-..... .....++..+...+.+++..++.+...+|..++...|+.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 444444455555555555544333221111 223334444444445555555555555555555444443
No 317
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=44.33 E-value=28 Score=28.51 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.5
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
..+|.+.+++.+.+++++..|+++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46788888898889999999999999885
No 318
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=43.76 E-value=2.2e+02 Score=31.24 Aligned_cols=79 Identities=19% Similarity=0.154 Sum_probs=62.0
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~d------~d~~V~~~a~~aL~ 2178 (2612)
+.+....+..+.+.+++.++.+...|+.++-.+.+++|..+-..+ .+++..++.++.+ .+..|++.....+.
T Consensus 33 ~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 33 PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999987664433 4667777777753 56789988887777
Q ss_pred HHHhhcC
Q 000051 2179 RVVASVP 2185 (2612)
Q Consensus 2179 ~l~~~~~ 2185 (2612)
......+
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 7766554
No 319
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=43.62 E-value=2.1e+02 Score=31.92 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCC-------CChhHHHHH-HHHHHHHHHhcccchhccHHHHHHHHHH
Q 000051 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD-------NQASIRRSS-AYLIGYFYKNSKLYLVDEAPNMISTLIV 2160 (2612)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~-------~~~~vR~~A-~~~L~~l~~~~~~~~~~~~~~il~~L~~ 2160 (2612)
.+-..+..++-.++...++..++|+.-.+.++... .....|..+ ...+..+++....-+.+|+..++.....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777778888899999999999843 234445544 4455677888888889999999998888
Q ss_pred HhcC
Q 000051 2161 LLSD 2164 (2612)
Q Consensus 2161 ll~d 2164 (2612)
.|+.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 8753
No 320
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=42.91 E-value=55 Score=36.67 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=76.9
Q ss_pred CHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHHh-
Q 000051 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLA- 1388 (2612)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~i~- 1388 (2612)
.+++|..+.-++..++...++...+.+...++.+....+.+....+...+..+..+.+ ...+...++++.+...+.
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 4578888888888887666666777777777777765444566677777777765543 222223467888887777
Q ss_pred CCCCHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHcC-CCCHH-HHHHHHHHH
Q 000051 1389 DRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFS-DQVVA-VREAAECAA 1444 (2612)
Q Consensus 1389 ~~~~~~~R~~Al~al~~L~~--~~~~~~~~~v~~ilp~ll~~l~-D~~~~-VR~aa~~al 1444 (2612)
..++.....+++.++..-+. .+... ...+-++.+-..++ ++++. +|..|.-++
T Consensus 98 ~~~~~~~~~~~lell~aAc~d~~~r~~---I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 98 KSKDRKVQKAALELLSAACIDKSCRTF---ISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp CTS-HHHHHHHHHHHHHHTTSHHHHHC---CHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccHHHHHH---HHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 23356666666665555442 12221 23355666666664 34444 566554443
No 321
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=42.68 E-value=37 Score=33.87 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1473 ~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
..|++++..|+++....|-.+...+|+++..|....+| ...|+..+-++|..|-+.-.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 46889999999999999998888999999888888887 667999999999999876543
No 322
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=42.26 E-value=90 Score=32.12 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=49.0
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccC
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD 1669 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~ 1669 (2612)
+.+.||.+.++..+...+.+-.++||..+.+.|.-+.+.+++. +...+++.++..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999999999999999988865 3456677766666543
No 323
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.25 E-value=2.2e+03 Score=35.93 Aligned_cols=1031 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-----------hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----------GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-----------~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
.++.+..+++..+..++.+...+++.+......- -+..+++.+.+.-.++.|..|.+++..++.+....
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Q ss_pred chh-hhhhhchhHHHHhhhhcCCCHHHHH----HHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 000051 1490 PQQ-LSQCLPKIVPKLTEVLTDTHPKVQS----AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2612)
Q Consensus 1490 p~~-l~~~L~~ivp~L~~~L~D~~~~VR~----aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~ 1564 (2612)
|.. +-...-+++..+..++.|...++-. .+-..+..+...+.+.....
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~--------------------------- 1117 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAE--------------------------- 1117 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhh---------------------------
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC--CcchhhHhhh-HHHHHHHhcCCCHHHHHHHHH
Q 000051 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--KDMIPYIGLL-LPEVKKVLVDPIPEVRSVAAR 1641 (2612)
Q Consensus 1565 ~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~--~~l~~~l~~l-l~~L~~~L~d~~~~VR~~A~~ 1641 (2612)
.........+...+...+.+++..||..+...+..+....+.+ +-+.|+.+-+ .|.+..-+..-...++..-..
T Consensus 1118 ---~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd 1194 (3550)
T KOG0889|consen 1118 ---EERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLD 1194 (3550)
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHH
Q ss_pred HHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHH
Q 000051 1642 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2612)
Q Consensus 1642 aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~ 1721 (2612)
++.-... .|+..++- .........-+..++.....+..- +.+..........-..|..+..+++
T Consensus 1195 ~~~fC~~-l~p~~f~~--------------~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~ 1258 (3550)
T KOG0889|consen 1195 AITFCLS-LGPCLFDF--------------TEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLA 1258 (3550)
T ss_pred HHHHHHH-cCCcccCc--------------hHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHH
Q ss_pred Hhhhhhc---cchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---hhhchhhhhHHHHhhccCCCchHHHHHH
Q 000051 1722 YLPRSLG---VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNWRIRQSS 1795 (2612)
Q Consensus 1722 ~L~~~~g---~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~---~~~~~i~~llp~L~~~l~d~~w~vR~~a 1795 (2612)
....... ....+|.++++..+++.+.....++-..+..+++.+... ++.+.+...+..+...+.|-+- .-...
T Consensus 1259 ~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~ 1337 (3550)
T KOG0889|consen 1259 ACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN-LSVPG 1337 (3550)
T ss_pred HHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh-hhHHH
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHhc
Q 000051 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVAN 1874 (2612)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~-~D~~~~VR~aA~~~l~~l~~~ 1874 (2612)
++.++.++.-+. .+-..+.+..+.+.+..-..++++......+ ......++.+.++....+...
T Consensus 1338 l~~ls~l~~ll~---------------~~f~~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~~ 1402 (3550)
T KOG0889|consen 1338 LEGLSRLLRLLI---------------NYFKVEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPPA 1402 (3550)
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccHH
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhh-----HHHHHhhhcC-CCChhHHHHHHHHHH
Q 000051 1875 TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS-----IIPILSRGLK-DPSASRRQGVCIGLS 1948 (2612)
Q Consensus 1875 ~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~-----llp~L~~~L~-d~~~~vR~~a~~aL~ 1948 (2612)
..+-+.+.+-.++..=-....+.+...|..-...+.......-..++.. ....+...++ ++....|...+.-..
T Consensus 1403 ~~~~~~~Ll~~v~~~e~~L~~~~~sp~r~pl~kfl~r~~~~tv~~f~~~~~~~~~~~~f~~~~~~~~~~~l~e~~~~~~~ 1482 (3550)
T KOG0889|consen 1403 ADKFLDELLLCVVLLEEVLRKEENSPFREPLLKFLNRFANPTVDYFLAQLDEPDLYRMFVYALRIDDLLPLREVLAKEWL 1482 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHccCchHHHHHHHcchHHHHHHHHHHHcccchhHHHHHHhhhHH
Q ss_pred HHHHhhChhhHHHhHh--------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC------------hhhhhhhHHHH
Q 000051 1949 EVMASAGKSQLLSFMD--------ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG------------MQAIDEIVPTL 2008 (2612)
Q Consensus 1949 ~li~~~~~~~l~~~l~--------~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g------------~~~~~~ilp~L 2008 (2612)
+......+..-....+ +.++.+...+ ..+++.-......+..+....+ ....+.+.-.+
T Consensus 1483 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v-k~~~e~~~s~~~iv~~l~~v~~~~~~~~~~~~~~~l~~~~~~~~l 1561 (3550)
T KOG0889|consen 1483 EFYTLLDPEISSYTVPNMASDIQFQMVPLISTMV-KNDDEWLLSSQFIVLALRRIWKLESILERLFLEDRLCLNSIVKCL 1561 (3550)
T ss_pred HHHHhccCccCccccchhhcchhhhhhHHHHHHH-hccHHHhhccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCH
Q 000051 2009 LHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDM 2088 (2612)
Q Consensus 2009 l~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~ 2088 (2612)
++.++....+..-+-.+-..+......-.+.+...+. .++...--.......+-..++...+.+.
T Consensus 1562 L~~~~~~~~~~~l~~~il~~~~~~~~~d~~~l~~~l~---------------~~vi~~~~~~~kr~~f~~~l~~f~~~~~ 1626 (3550)
T KOG0889|consen 1562 LEYLSLNKYDLELLLQILSFFEGNDNIDLTFLKEFLE---------------HEVIKSYSYNMKRNLFLVFLNLFGDKDL 1626 (3550)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCccHHHHHHHHH---------------HHHhhcCCHHHHHHHHHHHHhhcCCccc
Q ss_pred HHHHHHHHHHHHhhh--------------hcccccHHHHHHHHHhhcCCC----ChhHHHHHHHHHHHHHHhcccchhcc
Q 000051 2089 DVQSLAKEAAETVTL--------------VIDEEGVESLVSELLKGVGDN----QASIRRSSAYLIGYFYKNSKLYLVDE 2150 (2612)
Q Consensus 2089 ~vr~~a~~al~~l~~--------------~~~~~~l~~ll~~Ll~~l~~~----~~~vR~~A~~~L~~l~~~~~~~~~~~ 2150 (2612)
.-.-.+.. +..++. -.+++....+.+.+.....+. +...|.........++++.+....++
T Consensus 1627 ~~~~~~~~-l~~li~p~l~~~~~kge~~~i~~~d~~~~~~~~~~~~~~~~~~~~dd~~~i~~lqL~t~~ik~ase~i~d~ 1705 (3550)
T KOG0889|consen 1627 GADHKAQV-LQGLINPCLNYSFEKGETNEILGPDIVKKIDEVFVNKPLDPSYAYDDGLRIELLQLATLLIKYASEHIHDQ 1705 (3550)
T ss_pred chhHHHHH-HHHhhhHHHhhcccccccccccCCccchhhhhhhccCCCchhhhccchHHHHHHHHHHHHHhccHHHHHHh
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhh
Q 000051 2151 APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPL 2230 (2612)
Q Consensus 2151 ~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~i 2230 (2612)
.+.++...-.++.-.|+.++..+.-.+..++.... -...-+
T Consensus 1706 ~~~li~f~w~cl~~eD~~~k~~~~~~i~~fI~~~~---------------------------------------~~~kiV 1746 (3550)
T KOG0889|consen 1706 RKSLIKFAWNCLKSEDPMIKQSAYLVIAHFIERFQ---------------------------------------IPPKIV 1746 (3550)
T ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhc---------------------------------------cChhHh
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC-
Q 000051 2231 LPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP- 2309 (2612)
Q Consensus 2231 lp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p- 2309 (2612)
++.+...+.+..+|.|..+..+|..+.-... .-..+--..+.--.-+++.+ +.......+....-+.+.....+..
T Consensus 1747 ~qvf~~LlkT~~~E~R~~vk~aLdil~p~l~-~rm~~g~~~~~~w~kkiive--e~~~i~~~~~i~qliv~h~~~~~~~r 1823 (3550)
T KOG0889|consen 1747 LQVFVALLKTYQPEARAIVKQALDILTPALP-ARMELGDSKIPIWVKKIIVE--EGHSISQLLHVYQLIVRHSDLFYSSR 1823 (3550)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhchhhh-hhccCcccchHHHHHHHHHH--hhhhhHHHHHHHHHHHHhhhhhhhHH
Q ss_pred --chHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcC
Q 000051 2310 --FLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVS 2385 (2612)
Q Consensus 2310 --~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~ 2385 (2612)
|++.++..+-+...-+ +.+-|..|..-.|.++. =++.+.-.+ .+++......+.....+..+.
T Consensus 1824 ~~fv~~lv~~~~rl~~~pn~~~e~r~laiel~~~ii~---------We~~rl~~~----~~e~~~~~~~e~~~~~s~~~~ 1890 (3550)
T KOG0889|consen 1824 VRFVTPLVNSLPRLGSMPNSNSENRKLALELAGVIIK---------WELKRLKDT----DSETTLFSDSESLMSLSASIK 1890 (3550)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH---------HHHHHhhhh----hhhhhhcccchhhhhhhhcch
Q ss_pred hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHH------HHHHHHhhcCCCCchhhHHH--HHHHHHHH
Q 000051 2386 SAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD------LLQELLNLASSPSWAARHGS--VLVFATFL 2457 (2612)
Q Consensus 2386 ~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~------~l~~ll~~~~~~~~~~~~~~--~~~l~~~l 2457 (2612)
. ..........+.-+...+.|+..+......+.... ++..++.....++......+ ...+..++
T Consensus 1891 r--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~w~~~~~kL~~~eK~lt~~d~~~~~~~~~~~~ld~l~~v~ 1962 (3550)
T KOG0889|consen 1891 R--------GFSAIPKRYTPGPTNHEGRCVNLDLVSLRPETWPSVNVKLNYFEKVLTDMDLPENNLGNYANGLDVLSVVL 1962 (3550)
T ss_pred h--------HHHhccCCCCCCcchhhhhHHhHHHHhccccchhhcchHHHHHHHHhcCCCCcccHHHHHHhhHHHHHHHH
Q ss_pred hhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhc------CCCCHH
Q 000051 2458 RHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL------HDDSSE 2531 (2612)
Q Consensus 2458 ~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l------~~~~~~ 2531 (2612)
...+..-. ......+-..+-..+++++..+-+.--..+..++.......++-.......-..+...+ ......
T Consensus 1963 ~~~~~~~i-~~n~~~vq~~le~cl~~~~~~v~~~~~~~l~~~~~~~~~~~~e~e~~~~~v~~~i~~~l~s~~~~~~~~~~ 2041 (3550)
T KOG0889|consen 1963 ENVPKEWI-RENLNQIQALLEKCLKSGNLKVTEALNQLLSRLLSIFPNTHESLELLYQVVSKLIDELLTSVTTVPLQLAS 2041 (3550)
T ss_pred hcCCcHHH-HHhHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhcCCCchhHHHHhhHHHHHHHhhhhheecccccchH
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcch-----------hhhhHHHHHHHHhcccccchhh
Q 000051 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTP-----------VRLAAERCAVHAFQLTRGIIYS 2594 (2612)
Q Consensus 2532 vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~-----------vk~aae~~~~~~~~~~~~~~~~ 2594 (2612)
.--.++..++.++.++|+.++..+..+++.+-+..+|.-.+ +|..+|--+.++..++....++
T Consensus 2042 ~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~~k~a~dhl~~~~~~~~~~~~a~k~~~ell~~slel~~~ri~~l 2115 (3550)
T KOG0889|consen 2042 NVFGTLTLLKTLCSNNPDYLDRLLPGFMRCFSKAAKDHLSCGAVLNSQLGDASKGRSELLIKSVELGRERIFYL 2115 (3550)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcccchhhHHHHHHHHHHHhHHHHHHH
No 324
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.12 E-value=3.6e+02 Score=29.28 Aligned_cols=77 Identities=17% Similarity=0.061 Sum_probs=55.9
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHh-HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhC
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALCD---SILEVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~D---~d~~Vr~~A~~al~~l~~~~g 1997 (2612)
...+..|.+.++++++.+...++..|..++.++|......+.. ..+..+.+.+.. .++.||..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4556667777888999999999999999988887644333333 455556666654 488999999888877776655
Q ss_pred h
Q 000051 1998 M 1998 (2612)
Q Consensus 1998 ~ 1998 (2612)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 325
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=36.68 E-value=9.7e+02 Score=33.91 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHhhhhhCCCChhHHHHHHH----hhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccC
Q 000051 1192 LGRQGIALALHSAADVLRTKDLPVIMTFLI----SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK 1266 (2612)
Q Consensus 1192 ~~R~~~~~al~~~~~~~~~~~~~~i~~~li----~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~ 1266 (2612)
.+|.-...+|..+......-..++++.-++ .+.--|++..||..+..++..+..-+...+...++.++|.+.+..
T Consensus 445 ~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs 523 (1697)
T KOG3687|consen 445 AVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARS 523 (1697)
T ss_pred eEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcc
Confidence 345444455555443332222233433332 233457788999999999999998888888888888888888763
No 326
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=36.24 E-value=1.8e+03 Score=33.25 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=102.3
Q ss_pred HhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccC
Q 000051 2141 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2612)
Q Consensus 2141 ~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2612)
++.+......+...++.++..+...++.|...+..++-.++...-. ..-... +..... .+. + ..|
T Consensus 795 ~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~----~~~~~s-~lF~~~-~~~---~------~~g 859 (1364)
T KOG1823|consen 795 KSSDDSTVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLD----QIESVS-ELFKLL-ARK---R------HSG 859 (1364)
T ss_pred cCccHhHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhcccc----HHHHHH-HHHHHH-HHH---h------hcC
Confidence 3444556666777777888888777888888888777777653211 100000 000000 000 0 000
Q ss_pred CCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000051 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2612)
Q Consensus 2221 ~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~ 2300 (2612)
+ ...+-+.-.+...|+..++..++ +++-+.+.+..-+-++-.|-.++.....++.++..++
T Consensus 860 -s----------------~~~~~el~q~~~k~~t~lI~~~~--s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~ 920 (1364)
T KOG1823|consen 860 -S----------------PSTNFELCQDSFKGFTALIAQVG--SVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALV 920 (1364)
T ss_pred -C----------------CcccHHHHHHHHHHHHHHHHHhc--ceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 0 01133455667778888888776 3444555555556666666544444455555555555
Q ss_pred HhcCCCccCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcC
Q 000051 2301 RKGGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVS 2361 (2612)
Q Consensus 2301 ~~~~~~l~p~lpqL~~~~~k~L~d-~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~ 2361 (2612)
.+ +. ..|-+..+++.+-+.+.. ...+.|..+-..+-......++..+.+...+..+...
T Consensus 921 ~r-~i-~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~ 980 (1364)
T KOG1823|consen 921 SR-KI-MLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKLEKQMEFMVDNLLYE 980 (1364)
T ss_pred hc-cc-cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhh
Confidence 43 11 223455667766665444 4677777777666555444567777777777777543
No 327
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.78 E-value=1.7e+03 Score=32.72 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHhhcHHhHHhH--HHHHHhhhc-
Q 000051 1396 REGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQVV-AVREAAECAARAMMSQLSAQGVKLV--LPSLLKGLE- 1468 (2612)
Q Consensus 1396 R~~Al~al~~L~~~~~---~~~~~~v~~ilp~ll~~l~D~~~-~VR~aa~~al~~i~~~l~~~~v~~i--lp~Ll~~L~- 1468 (2612)
|..-...+..+...++ -.+..++..-+-..+..|.|... .+|..|.-++-.+|..+-....+.. ....-..++
T Consensus 172 r~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQlea 251 (1048)
T KOG2011|consen 172 RENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQLEA 251 (1048)
T ss_pred HHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333444555555443 23555555555566777777644 4677665555555444322211000 000011111
Q ss_pred -CCChhh---HHHHHHHHHHHHhhCchhhhhhhchhHHHHhhh-----hcCCCHHHHHHHHHHHHHHHhhcCChhH-hhH
Q 000051 1469 -DKAWRT---KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-----LTDTHPKVQSAGQTALQQVGSVIKNPEI-ASL 1538 (2612)
Q Consensus 1469 -~~~w~~---r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~-----L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~i 1538 (2612)
...-+. |...+...........+ .+..++..++.. -.|..+.+|..|++.||.-....+.-.+ ..+
T Consensus 252 Er~k~r~~rarle~Ll~~r~etqe~~d----~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsY 327 (1048)
T KOG2011|consen 252 ERNKSRGNRARLESLLMLRKETQEQQD----EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSY 327 (1048)
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchH
Confidence 111222 23333333322221112 233444444433 3689999999999999988877653333 334
Q ss_pred HHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHh-----hcCCCHHHHHHHHHHHHHH--hhccCCC
Q 000051 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG-----LRERSAETKKKAAQIVGNM--CSLVTEP 1610 (2612)
Q Consensus 1539 vp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~-----l~d~s~~vr~~a~~~l~~l--~~~~~~~ 1610 (2612)
+.++==.+.|.+..+| .|+.+|... +.+..+.+.+......+... ..|.+..||......+..+ ...+++
T Consensus 328 LKYiGWtLsDk~~~VRl~~lkaL~~L-~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d- 405 (1048)
T KOG2011|consen 328 LKYIGWTLSDKNGTVRLRCLKALIKL-YEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSD- 405 (1048)
T ss_pred HHHhcceeecCccHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccCh-
Confidence 4444345678888888 566666541 11222223333333333222 2455677777666555443 222221
Q ss_pred CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~ 1645 (2612)
+ =+..+..++-|.++.++.+|...+-.
T Consensus 406 ~--------di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 406 K--------DILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred h--------HHHHHHHHHhccCcchHHHHHHHHHH
Confidence 2 23334556667888888888776654
No 328
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=34.61 E-value=3.2e+02 Score=34.40 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=71.7
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhcc--HHHHHHHHHHHhc-CCChhHH
Q 000051 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE--APNMISTLIVLLS-DSDSTTV 2170 (2612)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~--~~~il~~L~~ll~-d~d~~V~ 2170 (2612)
.+.+|+.+-. +.++-.+.|..+++++.+.|++|-..|+.+++.+..+++.-+... -.++...|..++. ...+.|+
T Consensus 29 IlDvCD~v~~--~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~ 106 (462)
T KOG2199|consen 29 ILDVCDKVGS--DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVC 106 (462)
T ss_pred HHHHHHhhcC--CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHH
Confidence 3445554433 236678899999999999999999999999999999887654322 2344555555555 5667787
Q ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHH
Q 000051 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAIS 2201 (2612)
Q Consensus 2171 ~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~ 2201 (2612)
......+........++---.++..+..-+.
T Consensus 107 ~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk 137 (462)
T KOG2199|consen 107 EKMRDLVKEWSEEFKKDPSLSLISALYKKLK 137 (462)
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7777777776665555544455555554443
No 329
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=32.53 E-value=1.2e+03 Score=31.09 Aligned_cols=226 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhcccchhccHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHhhcCc--cccccHHHHHHHHHHhhhhhh
Q 000051 2137 GYFYKNSKLYLVDEAPNMISTLIVLLS-------DSDSTTVAAAWEALSRVVASVPK--EVQPSYIKVIRDAISTSRDKE 2207 (2612)
Q Consensus 2137 ~~l~~~~~~~~~~~~~~il~~L~~ll~-------d~d~~V~~~a~~aL~~l~~~~~~--~~l~~lv~~l~~~l~~~~~~~ 2207 (2612)
|.+|.....|+.+.+.+.+..+-..+. ..|..|++-+..-+...++.... .|...++..++.++..--..-
T Consensus 18 gdLFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~ 97 (851)
T KOG3723|consen 18 GDLFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPF 97 (851)
T ss_pred cccccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccC
Q ss_pred hhhhcCCc----------ccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHH
Q 000051 2208 RRKKKGGP----------ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLI 2277 (2612)
Q Consensus 2208 ~~~~~~~~----------~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi 2277 (2612)
.......+ ...-....+..+..-+|.-.+-|..+.++....-..-+..-+...- +-+.++...+ .-
T Consensus 98 g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~a-dLL~~hTEv~---~~ 173 (851)
T KOG3723|consen 98 GKKDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKA-DLLADHTEVI---VK 173 (851)
T ss_pred CCCCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhh-hhccCchHHH---HH
Q ss_pred HHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC-hhHHHHHHHH
Q 000051 2278 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLS 2356 (2612)
Q Consensus 2278 ~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~Ll~ 2356 (2612)
.+|+.. ...|..+.......|..+.||+|.+.. .|...++.-+..--....-+..-.+. +.+.+|.|.-
T Consensus 174 siLSgn------~~LLrvlS~Vye~~P~~i~PhlP~l~~----lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g 243 (851)
T KOG3723|consen 174 SILSGN------TMLLRVLSAVYEKQPQPINPHLPELLA----LLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIG 243 (851)
T ss_pred HHhccc------hHHHHHHHHHHhcCCCccCcccHHHHH----HhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q ss_pred hhhcCC-HHHHHHHHHHHHHH
Q 000051 2357 SLQVSD-AGIREAILTALKGV 2376 (2612)
Q Consensus 2357 ~l~~~d-~~vr~~~l~AL~~v 2376 (2612)
.+++.+ ..++..++.-+...
T Consensus 244 ~l~ds~~~~i~~~Ilk~ia~~ 264 (851)
T KOG3723|consen 244 HLKDSTHNDIILNILKEIAVY 264 (851)
T ss_pred HhccccchhHHHHHHHHHHhc
No 330
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.40 E-value=1.7e+02 Score=29.00 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHHHHhhc-CCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 000051 2111 ESLVSELLKGV-GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALS 2178 (2612)
Q Consensus 2111 ~~ll~~Ll~~l-~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~ 2178 (2612)
..++..+...+ ...+..+|...+.|+..+....+..+..-.+.++..+-....|.++.+...|+.++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34455554443 346788999999999999887777777777888888888888888999888887765
No 331
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=31.90 E-value=1.2e+03 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=15.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1620 ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
.+..++++.++++...-.-|.++|..+.
T Consensus 424 AIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 424 AIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 4566666666665555555555555443
No 332
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=31.69 E-value=11 Score=46.55 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000051 842 RELLLNEEASIREKVQGV 859 (2612)
Q Consensus 842 ~~~qL~kE~~IR~~v~~~ 859 (2612)
++++++||.++|.+.|+.
T Consensus 561 ~qkr~kkEkk~k~k~qe~ 578 (641)
T KOG3915|consen 561 VQKRLKKEKKAKRKLQEA 578 (641)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466788888888877754
No 333
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.26 E-value=2.3e+02 Score=31.15 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHH
Q 000051 2312 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 2391 (2612)
Q Consensus 2312 pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~ 2391 (2612)
+++...+...|.+++.+|...|..|+...- .|.+.||=..|-..+++ ...|+.+..-. +......+.+..++.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l~pY~d~L~~Lldd--~~frdeL~~f~---~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYLTPYKDNLENLLDD--KTFRDELTTFN---LSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHHHhHHHHHHHHcCc--chHHHHHHhhc---ccCCcCCCCHHHHhH
Confidence 678888899999999999999999998762 25677777777777654 34555433211 112222355677777
Q ss_pred HHHHHHHhh
Q 000051 2392 VYSVLKDLV 2400 (2612)
Q Consensus 2392 i~~~L~~~l 2400 (2612)
+++++...+
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 777766554
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=30.95 E-value=8.8e+02 Score=27.99 Aligned_cols=79 Identities=25% Similarity=0.247 Sum_probs=63.5
Q ss_pred HHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhh
Q 000051 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554 (2612)
Q Consensus 2475 ~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~ 2554 (2612)
+.+...+.++++..|+.|...+....... .++..++..+-..+.|++.-||++...+|+.+++..|+.+.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--------TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 56677788999999999988887766541 2456677777777788999999999999999999999999888
Q ss_pred HhHHHHH
Q 000051 2555 VALFGPA 2561 (2612)
Q Consensus 2555 l~~l~p~ 2561 (2612)
+......
T Consensus 180 l~~~~~~ 186 (197)
T cd06561 180 LEKNGLS 186 (197)
T ss_pred HHHHHHh
Confidence 8665443
No 335
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.88 E-value=5.5e+02 Score=27.17 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHh--hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 000051 1416 PYVIQMLPLLLVAFS-DQVVAVREAAECAARAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~--l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia 1486 (2612)
.++..++|.+..++. ...++.|-++...+..++.. +++..++.++..++........ .+.++.+|..+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 567788888888888 77788888887777777764 4455556666666655544333 344556666555
No 336
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.69 E-value=7.2e+02 Score=27.34 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=59.3
Q ss_pred ccccHHHHHHHHHhhcCC-CChhHHHHHHHHHHHHHHhcccchhccH--HHHHHH-HHHHhcC---CChhHHHHHHHHHH
Q 000051 2106 DEEGVESLVSELLKGVGD-NQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLSD---SDSTTVAAAWEALS 2178 (2612)
Q Consensus 2106 ~~~~l~~ll~~Ll~~l~~-~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~-L~~ll~d---~d~~V~~~a~~aL~ 2178 (2612)
...+-...+..|.+.+.. .++.+...|+.++..+.+++|..+-..+ .+++.. |..++.+ .+..|+....+.+.
T Consensus 32 ~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 32 TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 345678888899999974 6899999999999999999987665432 456665 6666652 34588888887777
Q ss_pred HHHhhcCc
Q 000051 2179 RVVASVPK 2186 (2612)
Q Consensus 2179 ~l~~~~~~ 2186 (2612)
........
T Consensus 112 ~W~~~f~~ 119 (141)
T cd03565 112 AWADAFRG 119 (141)
T ss_pred HHHHHhCC
Confidence 77665543
No 337
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=29.49 E-value=5.1e+02 Score=32.82 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=47.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~ 1449 (2612)
+.+..+.+-+.++ |+++...|+..++.+...||+.|.--+. ++..-+...+. ..++.|++.....+....+
T Consensus 45 d~lk~i~KRln~~-dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHK-DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCC-CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5677777778877 8999999999999999999976654332 33344444444 4466777665444444433
No 338
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=28.87 E-value=9e+02 Score=27.44 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=53.6
Q ss_pred hhHHHHHHHhccCCCH-HHHHHHHHHHHHHHHH---hChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhh-hhhccch
Q 000051 1657 DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP-RSLGVQF 1731 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~-~~R~~aa~~L~~i~~~---~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~-~~~g~~f 1731 (2612)
++-|.|+.+|+..... .+-....+..+.++.. +..+.+.++.+-+.... .+.. +.|+..|.+|+ ...|+.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~--~~e~--~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS--ENEP--VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh--ccch--HHHHHHHHhCCchhhhhHH
Confidence 4556677777654321 1111122222222222 23445566665555543 2222 45788999999 6667778
Q ss_pred hhhHHhHHHHHHhhcCCCC
Q 000051 1732 QNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~ 1750 (2612)
.|++..+.|.+.+.|.++.
T Consensus 79 ~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHHHHHHHHHcCCch
Confidence 8999999999999998874
No 339
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=28.75 E-value=2.3e+03 Score=32.09 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCC
Q 000051 2430 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 2509 (2612)
Q Consensus 2430 ~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2612)
+++..++.....+..+..+++.+++.++...+...+ ++ .+++....-.+.+++.+||+.|+.-+..+-......+.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~--~~-~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~~s~- 579 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPC--PF-WELLNLVLFKLGDESSEIRSKAMQLLRALEERFFSSSG- 579 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCC--CH-HHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhcccc-
Confidence 555555555555565667888888888765443221 23 36777777778999999999999988876543321110
Q ss_pred CchhhHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHhhCchhhhhhHhHH
Q 000051 2510 NTTVVVDILASVVSALHDDSSEVRRRAL-SALKSVAKANPSAIMVHVALF 2558 (2612)
Q Consensus 2510 ~~~~l~~~l~~~~~~l~~~~~~vr~~a~-~~l~~~a~~~~~~v~~~l~~l 2558 (2612)
......+...+.+..+++-..+. ..-+.+|+.+|++-.+.+..+
T Consensus 580 -----~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi 624 (1120)
T PF14228_consen 580 -----SEKSGDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEI 624 (1120)
T ss_pred -----cccccceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHH
Confidence 00111222334445555544443 445556666666544444333
No 340
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=27.33 E-value=5e+02 Score=30.21 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hHHhHHHHHHhhhcC-----CChhhHHHHHHHHHHHHhh
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYC 1488 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~ia~~ 1488 (2612)
+++.+++..+++...+.-+.||..|+.++..+.....+. .+. -.+.+.+.+.. -+|..-..+...+..+...
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 356677888888888888899999999999987432120 111 11233332221 2376655555544444321
Q ss_pred CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhc--CChhHhhHHHHHHhhcCC
Q 000051 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLTD 1548 (2612)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~--~~~~i~~ivp~Ll~~l~d 1548 (2612)
| .+...++.-++--.......+...+..+|-.+.... .......++..+...+.+
T Consensus 82 -~----~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 82 -P----EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred -H----HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 1 122233333333344456677777778887776532 223456666666666654
No 341
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.24 E-value=1e+03 Score=27.49 Aligned_cols=66 Identities=23% Similarity=0.159 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1381 ~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.+.+.+.+++.|..|-+... +...... ..+...++..+-....|++..||.+...+++.+....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~-~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVL-LLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHH-HHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 567778888755655544333 3332222 34667788888888888999999999999988876633
No 342
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=26.89 E-value=1.5e+03 Score=29.34 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=81.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch-hhhhHHHHHHhcC----CCCHhHHHHHHHHHHHHHHhcC
Q 000051 2230 LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITGPLIRIIGD----RFPWQVKSAILSTLSIIIRKGG 2304 (2612)
Q Consensus 2230 ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v-~~i~~pLi~~l~~----~~~~~vk~~al~~L~~L~~~~~ 2304 (2612)
++..+..-+.+.+......+..+||.+++.-. ....++ ..+..-|+..+.. ..+..+.-+++.+|..+.-..+
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~--~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDD--ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 56666666777777888888999999987643 333333 3445556665542 1234556678888887764332
Q ss_pred CCccCchH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-------ChhHHHHHHHHhhhcCC-HHHHHHHHHHHHH
Q 000051 2305 IALKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLSALST-------RVDPLVGDLLSSLQVSD-AGIREAILTALKG 2375 (2612)
Q Consensus 2305 ~~l~p~lp-qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~-------~~~~~l~~Ll~~l~~~d-~~vr~~~l~AL~~ 2375 (2612)
..- .|+| .+..+++..+.-..+.|.-.-...+.++...++ .-..++..|+...+++| .++-.-...-|..
T Consensus 394 nka-~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 394 NKA-HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred chh-hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 211 1333 355566666666555554433333333332222 12356777777777776 3344334444445
Q ss_pred HHHh
Q 000051 2376 VLKH 2379 (2612)
Q Consensus 2376 vi~~ 2379 (2612)
+|.+
T Consensus 473 lIkH 476 (604)
T KOG4500|consen 473 LIKH 476 (604)
T ss_pred HHHh
Confidence 5554
No 343
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=26.28 E-value=1.8e+03 Score=30.03 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=49.5
Q ss_pred HccCCCHHHHHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000051 1852 VRSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914 (2612)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~l~~~~~--~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~ 1914 (2612)
.++|.+..||.....++..+..+.| +.++.++..+...++..+.-...-+|..+.+.+..+-.
T Consensus 322 ~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 4789999999999999999998766 45677888888888877763333399999998877643
No 344
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.02 E-value=7.9e+02 Score=27.74 Aligned_cols=96 Identities=16% Similarity=0.257 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcccch------hhH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hHHh
Q 000051 1392 SAKRREGALLAFECLCEKLGRLFE------PYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKL 1458 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~~~~~~------~~v----~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v~~ 1458 (2612)
+...|.-++..+..+.+..|..|. ++. ..+++.++..+..+++.+=..+...+..+...+..+ ....
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999888886666 222 267888888887666777777888877777766554 3466
Q ss_pred HHHHHHh-hhcCCC--hhhHHHHHHHHHHHHh
Q 000051 1459 VLPSLLK-GLEDKA--WRTKQSSVQLLGAMAY 1487 (2612)
Q Consensus 1459 ilp~Ll~-~L~~~~--w~~r~~a~~~L~~ia~ 1487 (2612)
+++.++. .++++. +..|..+++.+..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6676666 344333 3478888999888875
No 345
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.39 E-value=1.3e+03 Score=27.98 Aligned_cols=129 Identities=20% Similarity=0.245 Sum_probs=80.6
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCC------------------CCc---------hhhHHHHHHHHhhc
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGP------------------ANT---------TVVVDILASVVSAL 2525 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~------------------~~~---------~~l~~~l~~~~~~l 2525 (2612)
+-..+...+.++++.+|-.++.-+-.++..+..... .++ .....++..++..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888888888888887776543211 111 12334667777776
Q ss_pred CCCC--HHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCC------------cchhhhhHHHHHHHHhcccccc
Q 000051 2526 HDDS--SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDG------------STPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2526 ~~~~--~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~------------~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
.++. +.+=.+.+..|..+++..|... +.++|.+.+-.-+. .--|+..---.+.++++-.-..
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~~~----~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~ 199 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQFM----SRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASS 199 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGG
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCch
Confidence 6555 6777888888999999988753 44555554443321 1114444556788999987766
Q ss_pred hhhh-HhhhhhccCC
Q 000051 2592 IYSR-STKIYNRLGC 2605 (2612)
Q Consensus 2592 ~~~~-~~~~~~~~~~ 2605 (2612)
++-. ....|+++|-
T Consensus 200 ~~~~~i~~~L~~lg~ 214 (239)
T PF11935_consen 200 PFQGRITQALTDLGA 214 (239)
T ss_dssp GGHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHcc
Confidence 5555 8888887764
No 346
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=24.39 E-value=1.2e+03 Score=27.58 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHhhhcCC-C-CHHHHHHHHHHHhccccccCCcchHHHHHHHHHHhhC
Q 000051 12 SIAASVSTSSTKRRQRIFRHDVTSLIRNTE-M-SPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLG 79 (2612)
Q Consensus 12 ~~~~~~~~ss~~~R~~~l~~~l~~~~~~~~-~-~~~~~~~l~~~l~~T~~~Y~D~~Sr~~v~~~l~~l~~ 79 (2612)
.+...+.++-.+.|-..+ +.|...++... . ++.+...|.+-||-++=--+.+--+..+-+-|.+++.
T Consensus 4 ~~~k~LAs~d~~~R~~al-~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRAL-KSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHH-HHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 467788899999999999 89999997754 3 7899999999999887554444455555554544433
No 347
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=24.06 E-value=4e+02 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred HhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCC
Q 000051 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2612)
Q Consensus 1713 R~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d 1748 (2612)
+-....++..+...++.-|.||...+++.....|..
T Consensus 84 ~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 84 LITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888889999999999887776654
No 348
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.05 E-value=1.1e+03 Score=28.15 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMM 1448 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~VR~aa~~al~~i~ 1448 (2612)
+.+++.....++...--|-.++-.++.+.+.-......|+. +++|.++.-+...+..-+..|...++.|+
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 55666665556656678888888888888766554444443 78999999888777777777766666663
No 349
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=24.03 E-value=1.1e+03 Score=27.94 Aligned_cols=106 Identities=12% Similarity=0.064 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1380 AATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~A-l~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
++.+...+.+..+|..-... -..++.+.. +-....+.+.....+++.-+|++|..+.-..... .....
T Consensus 82 ~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~--------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~ 150 (208)
T cd07064 82 LPLLEELITTKSWWDTVDSLAKVVGGILLA--------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDL 150 (208)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHh--------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHH
Confidence 44455566666677654432 111222111 1123356677788888888888886653332222 12344
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
+...+...+.++++.++++.-.+|..++...|+.+..+
T Consensus 151 l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 151 LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 44545556778888899998899998888777654443
No 350
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.25 E-value=5.9e+02 Score=26.63 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHH--HHHHHHHH----h--cCCChhHHHHHHHHHH
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN--MISTLIVL----L--SDSDSTTVAAAWEALS 2178 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~--il~~L~~l----l--~d~d~~V~~~a~~aL~ 2178 (2612)
..+...++..|.+.+.+.+|.+..-|+.++-.+.++++..+..++.. .+..++.. . .+.+..||..+...+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 35678899999999999999999999999999999988776654422 22223221 1 1346677777766554
Q ss_pred H
Q 000051 2179 R 2179 (2612)
Q Consensus 2179 ~ 2179 (2612)
.
T Consensus 112 ~ 112 (115)
T cd00197 112 L 112 (115)
T ss_pred H
Confidence 4
No 351
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=22.92 E-value=1.7e+03 Score=28.68 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=72.5
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccc-hhhHHHHHHHHHHHcCCC--------------CHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLF-EPYVIQMLPLLLVAFSDQ--------------VVAVREAA 1440 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~--~~~-~~~v~~ilp~ll~~l~D~--------------~~~VR~aa 1440 (2612)
..++.+.++++.+.||.+=.-. +..+...+. ..| .+.+..+...+...+.|. ..++....
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~V---L~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~ 217 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYV---LVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCV 217 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHH---HHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHH
Confidence 4556666677766677654332 223333222 111 112444444444443332 23444445
Q ss_pred HHHHHHHHH---hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhc
Q 000051 1441 ECAARAMMS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2612)
Q Consensus 1441 ~~al~~i~~---~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~ 1509 (2612)
..++..+.+ .+++..-+.++..+..+|.+ ++.+.++.+|.-.++..|..+.+.++.|+..+.+...
T Consensus 218 ~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 218 FPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 555555554 35555567788888888865 3456677777777777888888888888877655443
No 352
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.77 E-value=3.9e+02 Score=29.95 Aligned_cols=104 Identities=9% Similarity=0.089 Sum_probs=68.9
Q ss_pred hhhhhHHHHHHHHHHhcCCCCChhhHhhhhhhhcc--cChhhhhhhcchhhHHhhhcChhHHHHHHHHhhhcCCCChHHH
Q 000051 208 KCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTH--MSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKY 285 (2612)
Q Consensus 208 ~~K~~~~~~y~k~vl~sK~~p~~~~~~~~~~f~~~--~t~~df~~~ilP~~eKalLRsPE~~l~~~~~l~~~~~~dls~~ 285 (2612)
...+.|++--.+.+++.+..|..+..+.+...... ++-.|..+.|-..++-...-.++++...+..+.+=.++. -.+
T Consensus 51 ~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s-~~l 129 (158)
T PF14676_consen 51 MIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS-PSL 129 (158)
T ss_dssp GGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-HHH
Confidence 34567888888889999998888999999999885 466678888888888888888888777666555433322 112
Q ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHH
Q 000051 286 ATEILSVVLSQVRHADEGRKTGALTII 312 (2612)
Q Consensus 286 ~~~l~~~l~s~lkS~~~~vR~~a~~~~ 312 (2612)
-..++..+=..+.|.+...|.-|+.-|
T Consensus 130 rd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 130 RDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 233566666677788888888888754
No 353
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=22.73 E-value=1.8e+03 Score=28.78 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 000051 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1578 ip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~ 1649 (2612)
.+.+.+.+.+.++-+-..+..++..++.. +....-..-++-....+...++. ..++.+..|++||..+...
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~-g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACF-GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 34555667777777777677777776653 33211111223344555566655 6778888999999998864
No 354
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=22.63 E-value=5.3e+02 Score=28.90 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHHHhcChhhHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch
Q 000051 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2612)
Q Consensus 1857 ~~~VR~aA~~~l~~l~~~~~~~l~~~l~~-ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~ 1918 (2612)
+..+-+.|+.++..++.+.+..+....+. -++.++.++..++..++..+..-+..+..+.++
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 56788999999999999887655444333 357788888888999888888888777765543
No 355
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=22.08 E-value=1.1e+02 Score=24.79 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000051 2517 ILASVVSALHDDSSEVRRRALSALKSVAK 2545 (2612)
Q Consensus 2517 ~l~~~~~~l~~~~~~vr~~a~~~l~~~a~ 2545 (2612)
.++.++..+++++.++++.++.+|+.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45666666778899999999999998763
No 356
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=22.03 E-value=1.3e+03 Score=28.16 Aligned_cols=161 Identities=13% Similarity=0.180 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHHhhccCCC----Cc--chhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCCC---Cc---
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEP----KD--MIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE---NF--- 1655 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~----~~--l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~~g~~---~~--- 1655 (2612)
.|+.-+.+...++.++..+.-+ .. -...+..+...+...|. -.+..+=+.+..++..++..+-.. .+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 4777888888888888543211 11 12233344444444433 345667778888888888876522 22
Q ss_pred -hhhHHHHHHHhccC-CCH--HHHHHH--HHHHHHHHHHhCh---hhHHhHhHHHHHhccCCCh--------hhHhHHHH
Q 000051 1656 -PDLVSWLLDALKSD-NSN--VERSGA--AQGLSEVLAALGT---VYFEHILPDIIRNCSHQRA--------SVRDGYLT 1718 (2612)
Q Consensus 1656 -~~ll~~L~~~L~~~-~~~--~~R~~a--a~~L~~i~~~~g~---~~l~~llp~l~~~~~~~~~--------~vR~~~~~ 1718 (2612)
...+..+++.+.+. ... ..|+.+ -..+..++..-.. ..+...+..+++.+..+.. .-+..++.
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 23455556666655 221 345432 2334444444332 3456777777777665422 35666777
Q ss_pred HHHHhhh--hhccchhhhHHhHHHHHHhhcCCC
Q 000051 1719 LFKYLPR--SLGVQFQNYLQQVLPAILDGLADE 1749 (2612)
Q Consensus 1719 ~l~~L~~--~~g~~f~p~l~~iip~ll~~L~d~ 1749 (2612)
++..+.. .++....+|+++.+...+.++.++
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 7766654 456777788888777777666554
No 357
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.72 E-value=3.9e+02 Score=28.38 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhcccccc
Q 000051 2513 VVVDILASVVSALH-DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2513 ~l~~~l~~~~~~l~-~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
.+..+++.+..++. ....|.|-.+...+..++.+-|= -.+.+..++..+.+....... ...+.-|+..+++-+++.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~ 79 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-SDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQENV 79 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccc
Confidence 45667888888888 88899999999999999987542 244556666677666655544 556777788888766444
Q ss_pred hh
Q 000051 2592 IY 2593 (2612)
Q Consensus 2592 ~~ 2593 (2612)
+.
T Consensus 80 ~~ 81 (121)
T PF12397_consen 80 DS 81 (121)
T ss_pred cc
Confidence 43
No 358
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=3e+03 Score=31.66 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=88.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC---------CCCHh--HHHHHHHHHHHHHHh
Q 000051 2234 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD---------RFPWQ--VKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2234 l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~---------~~~~~--vk~~al~~L~~L~~~ 2302 (2612)
+-..+.....++|..+...+-++....|..--+++...+...+.++.+. +.+|. ....|+..+..+..+
T Consensus 1179 ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~ 1258 (1514)
T KOG0929|consen 1179 LSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQ 1258 (1514)
T ss_pred hhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444678899999999999998888554456666665544444431 11232 344577777777766
Q ss_pred cCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc------CChhHHHHHHHHhhhcC
Q 000051 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS------TRVDPLVGDLLSSLQVS 2361 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~------~~~~~~l~~Ll~~l~~~ 2361 (2612)
.-..+...+|.+...+..|...++..+-.....||-.++... ..++.+...+.+..+.+
T Consensus 1259 ~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~~T 1323 (1514)
T KOG0929|consen 1259 FFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFKTT 1323 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHHhc
Confidence 555566778888999999999999999999999999985432 34677777766666543
No 359
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=21.02 E-value=1.8e+02 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000051 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIA 876 (2612)
Q Consensus 842 ~~~qL~kE~~IR~~v~~~~~~l~~~~~~i~~l~~~ 876 (2612)
.+.+++||.+||++++.+...++.....|+.+-.+
T Consensus 11 ~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~ 45 (226)
T KOG3067|consen 11 LQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQN 45 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998888877643
No 360
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=20.96 E-value=1.5e+02 Score=29.64 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcCCcchhhhhHHHHHHHHhccccc
Q 000051 2532 VRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 2590 (2612)
Q Consensus 2532 vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~~~~~vk~aae~~~~~~~~~~~~ 2590 (2612)
.|-.++.+|..+....|..+-++++.++..|-....| ..||+..+.+|+...-+.+.+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 4667788899999999999999999999888888875 889999999999999888874
No 361
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.13 E-value=2.3e+03 Score=29.08 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=94.0
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHH
Q 000051 2396 LKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL-ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 2474 (2612)
Q Consensus 2396 L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~ 2474 (2612)
......|-++.+|..+...++.....+|+--+.-..-....| +.+++..+|....-.+..+....|..-.-.++.+.+.
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344556778899999999999999888852221111122344 4455556676666677777777665432235566666
Q ss_pred HHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhh
Q 000051 2475 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 2554 (2612)
Q Consensus 2475 ~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~ 2554 (2612)
..+.+.+.-|..-+|-.++..+.++-..+--. ...+-.+..++-|..++-|..-...+..+|+...+.+.+-
T Consensus 360 ~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~--------~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEK 431 (740)
T COG5537 360 DRILEFLRTDSDCVRICSIKSLCYLRILGVLS--------SSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEK 431 (740)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHhcccc--------hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 77776665554448999888888765543111 1122233333446666655555555555565444444321
Q ss_pred H------hHHHHHHHhhh
Q 000051 2555 V------ALFGPALAECL 2566 (2612)
Q Consensus 2555 l------~~l~p~l~~~~ 2566 (2612)
. ..++|.+.++.
T Consensus 432 ipl~~k~n~lL~a~~qgs 449 (740)
T COG5537 432 IPLATKTNRLLEAMKQGS 449 (740)
T ss_pred cchhhhhhhHHHHHHhhh
Confidence 1 44566665544
No 362
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=5e+02 Score=34.52 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQ--VVAVREAAECAARAMMSQ 1450 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~--~~~VR~aa~~al~~i~~~ 1450 (2612)
+.+..|++-+.++ ++++..-|+.+|+++.+.||..|.-.|. ++++-++.++... ...||+.+...+......
T Consensus 38 eAvralkKRi~~k-~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 38 EAVRALKKRLNSK-NSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 5677788888887 5788889999999999999988876654 6788888887654 567888776666555443
Done!