Query 000051
Match_columns 2612
No_of_seqs 721 out of 3903
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 1.3E-48 4.3E-53 585.9 88.3 997 1420-2589 6-1097(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1.4E-47 4.8E-52 574.5 84.0 1071 1338-2592 7-1191(1230)
3 2bpt_A Importin beta-1 subunit 100.0 1.4E-33 4.9E-38 409.7 75.2 742 1132-1994 6-857 (861)
4 4fdd_A Transportin-1; heat rep 100.0 8.3E-33 2.8E-37 398.6 72.2 726 1133-1946 16-818 (852)
5 2bpt_A Importin beta-1 subunit 100.0 7.6E-32 2.6E-36 391.5 80.7 751 1509-2341 15-856 (861)
6 4fdd_A Transportin-1; heat rep 100.0 2.9E-32 9.9E-37 392.9 73.7 707 1508-2358 22-801 (852)
7 1qgr_A Protein (importin beta 100.0 2.9E-32 9.9E-37 396.7 71.8 748 1505-2344 7-873 (876)
8 1qgr_A Protein (importin beta 100.0 5.4E-32 1.8E-36 393.9 72.5 732 1584-2422 9-873 (876)
9 1b3u_A Protein (protein phosph 100.0 6.7E-32 2.3E-36 374.1 52.9 565 1338-1992 11-585 (588)
10 1b3u_A Protein (protein phosph 100.0 1.9E-29 6.7E-34 349.4 53.0 566 1501-2181 12-586 (588)
11 2iw3_A Elongation factor 3A; a 99.9 4.9E-22 1.7E-26 271.8 29.4 310 1338-1652 15-328 (986)
12 1wa5_C Importin alpha RE-expor 99.9 6.5E-18 2.2E-22 245.4 59.5 652 1057-1769 5-794 (960)
13 2x19_B Importin-13; nuclear tr 99.8 1.2E-16 4.2E-21 233.7 65.9 726 1056-1896 23-875 (963)
14 2x1g_F Cadmus; transport prote 99.8 2.2E-17 7.4E-22 241.4 55.7 717 1057-1915 7-859 (971)
15 1wa5_C Importin alpha RE-expor 99.8 6.9E-16 2.4E-20 224.1 64.3 709 1133-1975 8-868 (960)
16 1ibr_B P95, importin beta-1 su 99.8 2.6E-17 9E-22 220.1 36.6 391 1583-2012 8-460 (462)
17 1ibr_B P95, importin beta-1 su 99.8 4.2E-17 1.4E-21 218.1 34.9 395 1132-1546 3-460 (462)
18 2x19_B Importin-13; nuclear tr 99.8 2E-13 6.9E-18 199.6 74.0 752 1577-2434 26-907 (963)
19 3m1i_C Exportin-1; heat repeat 99.8 5.2E-15 1.8E-19 216.7 54.1 752 1049-1954 8-880 (1049)
20 3now_A UNC-45 protein, SD10334 99.7 2.1E-14 7E-19 195.1 52.3 633 1708-2421 20-738 (810)
21 3now_A UNC-45 protein, SD10334 99.7 1.7E-13 5.8E-18 186.2 56.6 680 1854-2591 18-787 (810)
22 3ibv_A Exportin-T; karyopherin 99.7 2.9E-13 1E-17 192.7 59.7 746 1056-1939 5-903 (980)
23 2x1g_F Cadmus; transport prote 99.7 1.2E-13 4.3E-18 201.6 57.5 696 1588-2421 19-859 (971)
24 2vgl_B AP-2 complex subunit be 99.7 1.3E-14 4.3E-19 198.5 43.2 472 1380-1949 51-529 (591)
25 4hat_C Exportin-1; heat repeat 99.7 1.2E-12 4E-17 186.3 63.2 784 1047-1977 6-911 (1023)
26 2vgl_B AP-2 complex subunit be 99.7 5.7E-14 1.9E-18 192.1 45.1 464 1851-2419 56-531 (591)
27 3m1i_C Exportin-1; heat repeat 99.6 2.4E-11 8.2E-16 178.0 66.7 696 1587-2342 27-878 (1049)
28 2z6g_A B-catenin; FULL-length, 99.6 1.1E-13 3.7E-18 194.8 37.5 540 1887-2564 117-683 (780)
29 2jdq_A Importin alpha-1 subuni 99.6 1.1E-13 3.7E-18 184.3 35.6 393 1501-1993 22-442 (450)
30 3gjx_A Exportin-1; transport, 99.6 3.7E-11 1.3E-15 169.5 59.5 759 1047-1954 18-906 (1073)
31 2z6g_A B-catenin; FULL-length, 99.6 7.7E-13 2.6E-17 186.1 40.9 506 1421-1997 116-666 (780)
32 2jdq_A Importin alpha-1 subuni 99.6 2.1E-13 7.3E-18 181.4 33.5 345 1380-1728 22-393 (450)
33 4b8j_A Importin subunit alpha- 99.6 1.5E-12 5.1E-17 176.8 38.1 388 1338-1764 75-494 (528)
34 3ibv_A Exportin-T; karyopherin 99.6 1.1E-10 3.6E-15 166.5 57.5 608 1589-2278 21-787 (980)
35 1wa5_B Importin alpha subunit; 99.6 7.1E-13 2.4E-17 179.9 33.1 350 1339-1728 89-460 (530)
36 2qk1_A Protein STU2; STU2P, XM 99.5 1.2E-13 4.2E-18 165.4 20.8 195 1348-1542 26-234 (249)
37 1wa5_B Importin alpha subunit; 99.5 1.6E-12 5.4E-17 176.5 34.2 389 1576-1993 87-509 (530)
38 4hat_C Exportin-1; heat repeat 99.5 1.1E-09 3.9E-14 155.8 64.5 384 1855-2284 464-912 (1023)
39 4b8j_A Importin subunit alpha- 99.5 4.7E-12 1.6E-16 171.9 36.7 385 1379-1802 75-494 (528)
40 2z6h_A Catenin beta-1, beta-ca 99.5 1.5E-11 5.3E-16 170.5 42.4 471 1459-1997 15-530 (644)
41 2z6h_A Catenin beta-1, beta-ca 99.5 1E-11 3.4E-16 172.4 40.5 460 1301-1803 15-526 (644)
42 2qk2_A LP04448P; mini spindles 99.5 2.7E-13 9.2E-18 163.3 21.2 194 1342-1540 20-217 (242)
43 1w63_A Adapter-related protein 99.5 6.5E-12 2.2E-16 172.1 36.9 478 1453-1992 65-575 (618)
44 1jdh_A Beta-catenin; beta-cate 99.5 1.2E-11 4.3E-16 168.1 39.2 461 1299-1802 16-528 (529)
45 1jdh_A Beta-catenin; beta-cate 99.5 1.3E-11 4.6E-16 167.7 38.7 465 1460-1992 19-528 (529)
46 1w63_A Adapter-related protein 99.5 9.4E-11 3.2E-15 160.6 45.4 476 1853-2420 79-577 (618)
47 3ul1_B Importin subunit alpha- 99.4 5.2E-11 1.8E-15 159.8 33.4 393 1422-1873 59-478 (510)
48 3tpo_A Importin subunit alpha- 99.4 1.2E-10 4E-15 157.4 33.8 395 1420-1873 76-497 (529)
49 2qk2_A LP04448P; mini spindles 99.4 1.1E-11 3.9E-16 149.1 20.4 202 1774-2006 14-217 (242)
50 2vgl_A Adaptor protein complex 99.4 2.4E-10 8.3E-15 155.7 35.6 478 1453-1991 69-586 (621)
51 3ul1_B Importin subunit alpha- 99.3 2E-10 6.9E-15 154.1 33.1 348 1340-1726 60-431 (510)
52 2vgl_A Adaptor protein complex 99.3 1.2E-09 4.2E-14 148.7 40.7 497 1916-2545 68-589 (621)
53 3tpo_A Importin subunit alpha- 99.3 5E-10 1.7E-14 151.2 35.8 348 1340-1726 79-450 (529)
54 3gjx_A Exportin-1; transport, 99.3 4.1E-07 1.4E-11 128.6 64.9 384 1855-2284 490-936 (1073)
55 2qk1_A Protein STU2; STU2P, XM 99.3 1E-10 3.5E-15 140.0 20.3 206 1776-2007 17-233 (249)
56 4ady_A RPN2, 26S proteasome re 99.2 1.4E-06 4.8E-11 118.2 55.0 193 2240-2456 519-717 (963)
57 1oyz_A Hypothetical protein YI 99.2 1.6E-09 5.6E-14 133.5 24.4 241 1379-1671 24-266 (280)
58 2iw3_A Elongation factor 3A; a 99.1 1.2E-09 4.2E-14 150.2 24.6 285 1674-1997 30-327 (986)
59 1oyz_A Hypothetical protein YI 99.1 3.4E-09 1.2E-13 130.7 25.1 250 1421-1719 24-276 (280)
60 4ady_A RPN2, 26S proteasome re 99.1 5.5E-06 1.9E-10 112.6 56.8 261 1858-2180 451-717 (963)
61 3a6p_A Exportin-5; exportin-5, 99.1 1.1E-07 3.8E-12 139.4 42.5 538 1057-1668 11-682 (1204)
62 4gmo_A Putative uncharacterize 99.0 7.9E-10 2.7E-14 152.8 13.2 214 1922-2152 34-270 (684)
63 3ltj_A Alpharep-4; protein eng 99.0 1.2E-08 4.2E-13 118.7 19.7 189 1414-1647 8-197 (201)
64 3ltm_A Alpha-REP4; protein eng 98.9 1.7E-08 5.9E-13 118.4 19.8 186 1420-1650 19-205 (211)
65 3opb_A SWI5-dependent HO expre 98.9 9E-06 3.1E-10 108.5 46.4 554 1378-1994 132-728 (778)
66 3opb_A SWI5-dependent HO expre 98.9 5.7E-06 1.9E-10 110.4 43.9 475 1120-1649 159-729 (778)
67 4hxt_A De novo protein OR329; 98.8 1.8E-07 6.2E-12 113.0 23.9 237 1379-1653 3-246 (252)
68 1vsy_5 Proteasome activator BL 98.8 8.6E-07 2.9E-11 124.5 33.3 770 1412-2343 125-967 (997)
69 4db8_A Armadillo-repeat protei 98.8 7.9E-08 2.7E-12 116.3 19.2 231 1379-1647 13-250 (252)
70 3l6x_A Catenin delta-1; cateni 98.8 1.5E-06 5E-11 114.8 31.9 346 1299-1648 47-476 (584)
71 3ltm_A Alpha-REP4; protein eng 98.8 1E-07 3.5E-12 111.8 18.8 185 1378-1606 19-204 (211)
72 1xm9_A Plakophilin 1; armadill 98.8 2.4E-07 8.1E-12 122.2 24.3 336 1460-1802 4-447 (457)
73 2db0_A 253AA long hypothetical 98.8 3.4E-07 1.2E-11 95.9 19.9 215 2111-2378 31-246 (253)
74 3ltj_A Alpharep-4; protein eng 98.8 6.5E-08 2.2E-12 112.5 16.7 188 1732-1992 9-196 (201)
75 4hxt_A De novo protein OR329; 98.7 2.9E-07 1E-11 111.1 21.8 229 1301-1531 3-244 (252)
76 1xm9_A Plakophilin 1; armadill 98.7 9.5E-07 3.2E-11 116.4 28.3 342 1380-1724 4-448 (457)
77 3a6p_A Exportin-5; exportin-5, 98.7 4.1E-05 1.4E-09 112.4 46.0 545 1589-2201 26-681 (1204)
78 4db8_A Armadillo-repeat protei 98.7 1.1E-07 3.7E-12 115.0 15.6 226 1301-1528 13-251 (252)
79 3l6x_A Catenin delta-1; cateni 98.7 2.8E-06 9.7E-11 112.1 28.4 304 1498-1803 89-475 (584)
80 3nmz_A APC variant protein; pr 98.6 1.9E-06 6.4E-11 111.4 22.8 309 1457-1768 69-452 (458)
81 2of3_A ZYG-9; multifunctional 98.6 3.2E-06 1.1E-10 99.3 22.0 174 1349-1533 57-241 (266)
82 3nmz_A APC variant protein; pr 98.5 3.8E-06 1.3E-10 108.6 24.7 315 1377-1729 69-454 (458)
83 4ffb_C Protein STU2; tubulin f 98.5 1.2E-06 4.2E-11 107.2 18.5 194 1780-1998 14-216 (278)
84 4db6_A Armadillo repeat protei 98.5 1.8E-06 6E-11 101.1 18.6 192 1420-1648 12-209 (210)
85 1vsy_5 Proteasome activator BL 98.5 7.3E-06 2.5E-10 115.2 27.7 689 1845-2591 134-971 (997)
86 3oc3_A Helicase MOT1, MOT1; re 98.5 7.9E-07 2.7E-11 109.0 15.2 239 1378-1676 174-425 (800)
87 4db6_A Armadillo repeat protei 98.5 1.5E-06 5.2E-11 101.6 17.0 186 1342-1528 16-209 (210)
88 2db0_A 253AA long hypothetical 98.4 0.00015 5.2E-09 76.4 27.9 214 1844-2140 32-245 (253)
89 2of3_A ZYG-9; multifunctional 98.4 1.2E-05 4.1E-10 94.5 22.3 188 1778-2001 49-243 (266)
90 4ffb_C Protein STU2; tubulin f 98.4 4.5E-06 1.5E-10 102.2 17.8 187 1463-1653 14-217 (278)
91 3oc3_A Helicase MOT1, MOT1; re 98.3 4.3E-06 1.5E-10 102.7 16.2 211 1301-1527 175-403 (800)
92 1xqr_A HSPBP1 protein; armadil 98.2 4.9E-05 1.7E-09 92.7 20.8 135 1394-1529 55-197 (296)
93 3b2a_A TON_1937, putative unch 98.1 0.00017 5.9E-09 80.0 21.4 219 1736-1989 32-256 (265)
94 3nmw_A APC variant protein; AR 98.1 7.7E-05 2.6E-09 93.6 21.5 226 1392-1653 97-339 (354)
95 3nmw_A APC variant protein; AR 98.1 7.3E-05 2.5E-09 93.8 20.0 218 1313-1531 97-337 (354)
96 1xqr_A HSPBP1 protein; armadil 98.1 4.9E-05 1.7E-09 92.7 17.2 175 1353-1529 55-239 (296)
97 3b2a_A TON_1937, putative unch 98.0 0.0013 4.5E-08 73.2 25.6 218 1378-1642 33-255 (265)
98 3tjz_B Coatomer subunit gamma; 97.8 4.5E-05 1.5E-09 94.2 11.5 279 1883-2177 66-348 (355)
99 3tjz_B Coatomer subunit gamma; 97.7 0.0011 3.9E-08 81.7 21.2 269 1346-1643 76-348 (355)
100 3grl_A General vesicular trans 97.3 0.21 7.2E-06 65.3 35.4 323 1335-1687 19-394 (651)
101 3grl_A General vesicular trans 97.3 0.069 2.4E-06 69.7 29.6 338 1887-2301 23-394 (651)
102 1te4_A Conserved protein MTH18 97.2 5.5E-05 1.9E-09 80.7 0.7 111 1419-1554 11-121 (131)
103 4gmo_A Putative uncharacterize 97.2 0.65 2.2E-05 63.8 41.5 88 1458-1546 35-128 (684)
104 1lrv_A LRV, leucine-rich repea 97.1 5.9E-05 2E-09 88.5 -0.3 186 1344-1644 56-242 (244)
105 3l9t_A Putative uncharacterize 97.1 0.014 4.8E-07 66.2 18.8 186 2345-2557 33-219 (240)
106 1lrv_A LRV, leucine-rich repea 97.1 0.00019 6.5E-09 84.2 2.8 185 1506-1800 57-242 (244)
107 1te4_A Conserved protein MTH18 97.0 0.00078 2.7E-08 71.6 6.5 119 1378-1525 12-130 (131)
108 3u0r_A Apoptosis inhibitor 5; 96.8 0.64 2.2E-05 58.0 30.5 297 2240-2551 39-364 (507)
109 3tt9_A Plakophilin-2; cell adh 96.5 0.022 7.4E-07 66.3 14.6 205 1421-1649 9-230 (233)
110 3l9t_A Putative uncharacterize 96.2 0.052 1.8E-06 61.6 14.7 142 1617-1769 69-210 (240)
111 3tt9_A Plakophilin-2; cell adh 95.8 0.11 3.9E-06 60.2 15.8 185 2315-2499 10-227 (233)
112 3u0r_A Apoptosis inhibitor 5; 94.7 5.1 0.00018 50.1 25.7 124 1672-1806 42-165 (507)
113 3o2t_A Symplekin; heat repeat, 94.5 3.7 0.00013 50.8 24.3 232 2365-2605 41-321 (386)
114 4atg_A TAF6; transcription, TF 91.8 5.8 0.0002 44.1 18.0 106 1590-1701 60-173 (196)
115 3o2t_A Symplekin; heat repeat, 91.5 26 0.00087 43.4 25.3 88 2091-2182 42-129 (386)
116 4atg_A TAF6; transcription, TF 91.4 2 6.9E-05 47.7 13.8 115 2225-2340 36-160 (196)
117 1lsh_A Lipovitellin (LV-1N, LV 90.1 5 0.00017 57.7 20.0 154 1432-1606 407-577 (1056)
118 3gs3_A Symplekin, LD45768P; he 89.7 36 0.0012 39.7 26.7 90 2089-2182 30-119 (257)
119 3jxy_A Alkylpurine DNA glycosy 86.4 7.7 0.00026 45.0 15.0 143 2394-2557 64-207 (232)
120 1vsy_4 Proteasome activator BL 85.4 40 0.0014 46.4 23.3 276 1456-1746 337-666 (799)
121 3gs3_A Symplekin, LD45768P; he 84.5 68 0.0023 37.4 24.0 183 2364-2551 30-249 (257)
122 3s4w_B Protein FACD2, fanconi 84.0 1.8E+02 0.006 41.9 29.1 152 2346-2503 397-551 (1323)
123 1lsh_A Lipovitellin (LV-1N, LV 83.1 60 0.0021 46.5 24.8 173 2152-2377 390-575 (1056)
124 1vsy_4 Proteasome activator BL 82.0 1E+02 0.0035 42.3 25.2 222 1876-2123 330-569 (799)
125 3fga_B Serine/threonine-protei 80.3 49 0.0017 41.1 18.9 105 2241-2346 263-370 (403)
126 2b6c_A Hypothetical protein EF 79.7 17 0.00059 41.6 14.1 141 2394-2555 58-198 (220)
127 1ho8_A Vacuolar ATP synthase s 72.9 2.1E+02 0.007 36.3 21.8 55 1898-1952 418-476 (480)
128 1upk_A MO25 protein; transfera 70.7 1.9E+02 0.0064 34.8 22.8 78 1774-1875 208-285 (341)
129 2b6c_A Hypothetical protein EF 67.7 38 0.0013 38.7 13.0 140 1341-1496 58-197 (220)
130 2npp_B PP2A, B subunit, serine 67.5 2.4E+02 0.0084 35.5 20.9 252 1188-1449 128-399 (449)
131 1upk_A MO25 protein; transfera 66.0 2.3E+02 0.0078 34.1 20.5 149 1378-1529 78-239 (341)
132 2npp_B PP2A, B subunit, serine 65.3 1.1E+02 0.0036 38.8 17.1 109 2241-2357 296-411 (449)
133 1w9c_A CRM1 protein, exportin 62.7 71 0.0024 38.3 14.1 135 2244-2380 44-198 (321)
134 3ldz_A STAM-1, signal transduc 60.5 34 0.0011 36.0 9.8 73 1378-1451 42-116 (140)
135 3g2s_A C-terminal fragment of 60.1 71 0.0024 33.8 12.2 74 1378-1452 48-129 (149)
136 1mhq_A ADP-ribosylation factor 58.8 58 0.002 34.5 11.3 73 1378-1451 38-118 (148)
137 3ldz_A STAM-1, signal transduc 58.0 79 0.0027 33.1 12.1 80 2107-2186 37-118 (140)
138 1x5b_A Signal transducing adap 57.4 49 0.0017 35.7 10.6 73 1378-1451 52-127 (163)
139 3dad_A FH1/FH2 domain-containi 53.1 1.9E+02 0.0064 34.8 15.4 140 2285-2425 131-291 (339)
140 1x5b_A Signal transducing adap 51.7 1.3E+02 0.0044 32.4 12.8 80 2107-2186 47-129 (163)
141 1juq_A ADP-ribosylation factor 51.6 75 0.0026 34.5 11.0 73 1378-1451 50-130 (171)
142 4flb_A Regulation of nuclear P 51.0 1.3E+02 0.0044 31.1 12.4 107 2315-2425 10-119 (132)
143 3dad_A FH1/FH2 domain-containi 50.8 4E+02 0.014 32.1 19.2 150 1392-1541 131-300 (339)
144 1w9c_A CRM1 protein, exportin 48.9 4.2E+02 0.014 31.8 18.4 119 1859-1977 93-227 (321)
145 1elk_A Target of MYB1; superhe 47.9 95 0.0033 33.2 10.9 74 1378-1451 53-132 (157)
146 1juq_A ADP-ribosylation factor 44.8 99 0.0034 33.6 10.6 80 2107-2186 45-132 (171)
147 3g2s_A C-terminal fragment of 41.7 2.3E+02 0.0079 29.9 12.5 76 1457-1532 47-130 (149)
148 3ut4_A CTHE_2751, putative unc 41.5 1.5E+02 0.0053 30.5 10.5 88 1450-1551 23-110 (134)
149 3zyq_A Hepatocyte growth facto 40.1 1.4E+02 0.0047 34.1 11.4 73 1378-1451 45-120 (226)
150 3jxy_A Alkylpurine DNA glycosy 39.3 1.2E+02 0.0043 34.7 11.0 107 1380-1496 97-204 (232)
151 1vdy_A Hypothetical protein (R 35.9 1E+02 0.0035 32.2 8.4 50 1691-1740 44-93 (140)
152 1mhq_A ADP-ribosylation factor 35.2 2.4E+02 0.0081 29.8 11.4 74 1695-1768 37-118 (148)
153 1dvp_A HRS, hepatocyte growth 32.2 1.2E+02 0.0042 34.4 9.3 72 1378-1450 42-116 (220)
154 3zyq_A Hepatocyte growth facto 31.9 4.1E+02 0.014 30.1 13.7 81 2106-2186 39-122 (226)
155 4flb_A Regulation of nuclear P 31.5 2.5E+02 0.0087 28.7 10.9 87 2071-2163 5-95 (132)
156 1vdy_A Hypothetical protein (R 30.4 82 0.0028 32.9 6.6 75 2108-2182 45-130 (140)
157 2kw3_C Regulatory factor X-ass 29.3 16 0.00055 30.6 0.8 17 252-268 20-36 (62)
158 1sz9_A PCF11 protein; RNA poly 28.0 5.1E+02 0.017 27.0 12.4 75 2346-2420 40-114 (144)
159 1elk_A Target of MYB1; superhe 27.8 5.5E+02 0.019 27.2 12.9 79 2107-2185 48-133 (157)
160 2jak_A Serine/threonine-protei 26.1 8.5E+02 0.029 30.0 15.6 209 2348-2568 173-392 (392)
161 3ut4_A CTHE_2751, putative unc 25.9 3.2E+02 0.011 28.2 9.8 48 1686-1737 21-68 (134)
162 1dvp_A HRS, hepatocyte growth 24.1 3.5E+02 0.012 30.6 11.2 79 2107-2185 37-118 (220)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.3e-48 Score=585.86 Aligned_cols=997 Identities=17% Similarity=0.189 Sum_probs=749.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~----l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
.-++.++..+.++++++|..|...+...... +.+...+.+++.+++.+.+++|.+|..|+.+|+.++...+. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3477888889999999999987777655431 22234578899999999999999999999999999987665 4
Q ss_pred hhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHh
Q 000051 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~ 1575 (2612)
+++.+++.++..+.|+++.||.+|+.+|+.++..++.+.. +. ......++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5688999999999999999999999999999887653210 00 00112345
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000051 1576 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2612)
Q Consensus 1576 ~iip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~ 1654 (2612)
.++|.+.+.+. +.++.+|..+..+++.++...+ +.+.+|++.+++.+...+.++++.||..|..+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 67788888887 4778999999999999998643 47889999999999999999999999999999999999988888
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f 1731 (2612)
++.+++.+++.+.++.+...|..++++++.++...|.. +++.++|.+++.+.+.++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88999999999877654446788899999999988864 457889999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhhcCCC-------------------------------------ChhHHHHHHHHHHHHHHHhhh---c
Q 000051 1732 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1771 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~-------------------------------------~~~VR~~Al~al~~lv~~~~~---~ 1771 (2612)
.||++.++|.++..+.++ ...+|.+|..++..++..++. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999887521 013688888888887765543 2
Q ss_pred hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccch-HHHHHHHHHHhChhhHHHHHHHHH
Q 000051 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST-EAHGRAIIEVLGRDKRNEVLAALY 1850 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~-~~~~~~l~~~Lg~~~~~~vl~~L~ 1850 (2612)
.++.++|.+...+.|.++.+|..++..++.++...+...+. . ........ +.....+. ...+.+++.+.
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~-----~~l~~ll~~l~ 440 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW--L---CDPDAMEQGETPLTMLQ-----SQVPNIVKALH 440 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-----------------CCCHHHHHH-----HHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc--c---cCccccccccchHHHHH-----HHhhHHHHHHH
Confidence 45567888888888888899999999988887654321100 0 00000000 00001111 12345666666
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhchh----hhhhH
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSI 1924 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~--~~R~~A~~aL~~lv~~~~~~----~l~~l 1924 (2612)
..+.|.++.+|.+++..++.++...+..+.++++.+++.+...+.++++ .+|..++..++.++...|+. +++.+
T Consensus 441 ~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~l 520 (1230)
T 1u6g_C 441 KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 520 (1230)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHH
Confidence 6788999999999999999999988877788999999999999998764 89999999999998877665 56789
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh------hhHHHhHhHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHh
Q 000051 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSA 1996 (2612)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~------~~l~~~l~~ll~~l~~~L--~D~d~~Vr~~A~~al~~l~~~~ 1996 (2612)
+|.+...+.++++.+|..++.+++.++...+. ..+.+|++.++|.+...+ .|.++++|..|..+++.+....
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877654 366789999999999999 7889999999999999999988
Q ss_pred Chhh---hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHh-CCChhhhH
Q 000051 1997 GMQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHL 2072 (2612)
Q Consensus 1997 g~~~---~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l 2072 (2612)
|... +..++|.+.+.+.++..+..++ ++++.++... +.++.+++
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~--------------------------------~al~~i~~~~~~~~~~~~~ 648 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTV--------------------------------KALTLIAGSPLKIDLRPVL 648 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHH--------------------------------HHHHHHTTCSSCCCCHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHH--------------------------------HHHHHHHhCccccchHHHH
Confidence 7642 2444555555554443322222 3333333211 23578999
Q ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc----ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchh
Q 000051 2073 GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLV 2148 (2612)
Q Consensus 2073 ~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~----~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~ 2148 (2612)
+.++|.+.+.+.++++.+|..++.+++.++...+. +.+.+++..++..+.++|+.++..+..++..+++..+..+.
T Consensus 649 ~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~ 728 (1230)
T 1u6g_C 649 GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728 (1230)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH
Confidence 99999999999999999999999999999987753 34555555555667788999999999999999988777777
Q ss_pred ccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCch
Q 000051 2149 DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 2228 (2612)
Q Consensus 2149 ~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~ 2228 (2612)
++.+.+++.++..+.++. ++..+..++..+.+.. .. . + ++ +....
T Consensus 729 ~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l---------------~~-~---------~-----~~---~~~~~ 773 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPL--LQGGALSAMLDFFQAL---------------VV-T---------G-----TN---NLGYM 773 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHH---------------HT-T---------C-----CT---TCSHH
T ss_pred HhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHH---------------Hh-c---------C-----CC---CCCHH
Confidence 788888898888886543 1111222222222110 00 0 0 00 11222
Q ss_pred hhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC-CCCHhHHHHHHHHHHHHHHh
Q 000051 2229 PLLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2229 ~ilp~l~~~L~~-----~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~-~~~~~vk~~al~~L~~L~~~ 2302 (2612)
.+++.+.+.+.. .....+..++.+++.++...++ .....+..+ +..+.+ ......+..++.+++.++..
T Consensus 774 ~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~ 848 (1230)
T 1u6g_C 774 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQF----IQDVKNSRSTDSIRLLALLSLGEVGHH 848 (1230)
T ss_dssp HHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTTT----TTTTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHHH----HHHhCCCCccHHHHHHHHHHHHHhccc
Confidence 333333322211 1334577899999999988873 223333332 333332 23567788888999998776
Q ss_pred cCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCC
Q 000051 2303 GGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGK 2382 (2612)
Q Consensus 2303 ~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~ 2382 (2612)
.+ +.+ .|+++++|++++.|+++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++...+.
T Consensus 849 ~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~ 922 (1230)
T 1u6g_C 849 ID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASV 922 (1230)
T ss_dssp SC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCS
T ss_pred CC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCCh
Confidence 44 344 48899999999999999999999999999975 56788999999999754 56799999999999998766
Q ss_pred CcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCc
Q 000051 2383 SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 2462 (2612)
Q Consensus 2383 ~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~ 2462 (2612)
....++.+.|+..|...+.+.++.+|..+++|+|.++...++ ++++.+
T Consensus 923 ~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~----~l~p~l---------------------------- 970 (1230)
T 1u6g_C 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLPRL---------------------------- 970 (1230)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHHHH----------------------------
T ss_pred hhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH----HHHHHH----------------------------
Confidence 666899999999999999888889999999999999987653 122222
Q ss_pred cccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000051 2463 AISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS 2542 (2612)
Q Consensus 2463 ~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~ 2542 (2612)
.+.+.++++.+|..++.++++++...+ +..+.++..+++.++.+++|++.+||++|+.++++
T Consensus 971 ---------------~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~ 1032 (1230)
T 1u6g_C 971 ---------------KGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032 (1230)
T ss_dssp ---------------TTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHH
T ss_pred ---------------HHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 223344455566666666666554432 12234567788888899999999999999999999
Q ss_pred HHhhCchhhhhhHhHHHHHHHhhhcC------------------CcchhhhhHHHHHHHHhcccc
Q 000051 2543 VAKANPSAIMVHVALFGPALAECLKD------------------GSTPVRLAAERCAVHAFQLTR 2589 (2612)
Q Consensus 2543 ~a~~~~~~v~~~l~~l~p~l~~~~~~------------------~~~~vk~aae~~~~~~~~~~~ 2589 (2612)
++|++|+.+.++++.++|.||++++. .+..+|.+|..|+..+++...
T Consensus 1033 ~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~ 1097 (1230)
T 1u6g_C 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCL 1097 (1230)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 445899999999999998763
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.4e-47 Score=574.49 Aligned_cols=1071 Identities=16% Similarity=0.179 Sum_probs=785.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcch--hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS--LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~--l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
.+..+++.+.+. |...|+.|...|....+...... .....+++.+.+.+.++ +|.+|.+|+.+++.+++.++.
T Consensus 7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH---
Confidence 345666665544 46788888877776654321111 11125777788888876 899999999999999987764
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---------hHHhHHHHHHhhhc-CCChhhHHHHHHHHHHH
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 1485 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---------~v~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~i 1485 (2612)
+++..+++.++..+.|+++.||.++..+++.++..+++. .++.++|.+++.+. +++|..|.+++.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988765 47899999999998 58899999999999999
Q ss_pred HhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCC-hhHH-HHHHHHHhc
Q 000051 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 1563 (2612)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~-~~~r-~al~~L~~~ 1563 (2612)
+...++.+.++++.+++.++..+.|+++.||..|+.+++.++...++..+..++|.+++.+.+++ ...| .+++.+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 98888888889999999999999999999999999999999998876666777888877775432 2233 344433321
Q ss_pred -cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-------------
Q 000051 1564 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 1629 (2612)
Q Consensus 1564 -~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~------------- 1629 (2612)
......-.+++..++|.+.+.+.+.++++|..+..+++.++...+ +++.||++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111122235778899999999999999999999999999998654 5789999999999877663
Q ss_pred ------------------------CCCHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhccCCCHHHHHHHHHHH
Q 000051 1630 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2612)
Q Consensus 1630 ------------------------d~~~~VR~~A~~aL~~L~~~~g~---~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L 1682 (2612)
|..|.+|..|+.+++.++...|+ .+++.++|.+...+.+.. ..+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 12467899999999999987664 256777888777775544 55898999999
Q ss_pred HHHHHHhCh----------------------hhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1683 SEVLAALGT----------------------VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1683 ~~i~~~~g~----------------------~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
..++...|. ..++.++|.+.+.+.++++.+|.+++.+++.+...++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 988887653 1335566666666899999999999999999999988888999999999
Q ss_pred HHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhc----hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000051 1741 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1814 (2612)
Q Consensus 1741 ~ll~~L~d~~~--~VR~~Al~al~~lv~~~~~~----~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~ 1814 (2612)
.++..+.|+.. .+|..++.++..++..++.+ .++.++|.+...+.|.+|++|..++..++.++..+.....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~--- 555 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ--- 555 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS---
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc---
Confidence 99999999875 89999999998888766655 5667899999999999999999999999998866532100
Q ss_pred ccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 000051 1815 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2612)
Q Consensus 1815 ~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~--~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~ 1892 (2612)
...... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 556 ----~~~~~~--------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 556 ----PSSFDA--------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----CCCCCC--------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----ccccch--------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 000000 123455666666666 788999999999999999999888888899999999998
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhc----hhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHH
Q 000051 1893 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968 (2612)
Q Consensus 1893 ~L~~~~~~~R~~A~~aL~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~ 1968 (2612)
.+.+. ..|..+.++++.++...+ ..+.+.++|.+...++++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 88754 478889999998875432 236789999999999999999999999999999887764333334444444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhc
Q 000051 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045 (2612)
Q Consensus 1969 ~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~ 2045 (2612)
.+...+.+.|.+++..+..++..+.+..+.. ..+.++|.++..+++....+.+++++..++
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~---------------- 759 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF---------------- 759 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHH----------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHH----------------
Confidence 4445567889999999999998887654432 245667777666655442333333332221
Q ss_pred cCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-----CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhh
Q 000051 2046 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 2120 (2612)
Q Consensus 2046 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~ 2120 (2612)
..+... +. -.+.+..+++.++..+.. .++..+..+..+++.++...+... ..+++.+...
T Consensus 760 ------------~~l~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~~~~ 824 (1230)
T 1u6g_C 760 ------------QALVVT-GT-NNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-PAVVGQFIQD 824 (1230)
T ss_dssp ------------HHHHTT-CC-TTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-HHHHTTTTTT
T ss_pred ------------HHHHhc-CC-CCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-HHHHHHHHHH
Confidence 111110 11 023556666666655432 245667788889998887665533 2677778877
Q ss_pred cCC--CChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2121 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2121 l~~--~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
+++ .+...+..++.+++.+... .++.+ .+++.+.++..+.|+++.||.+|+.+|+.++..
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~--~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~--------------- 886 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHH--IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVG--------------- 886 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHH--SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH---------------
T ss_pred hCCCCccHHHHHHHHHHHHHhccc--CCCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhcc---------------
Confidence 775 4567788888888887653 23444 367889999999999999999999999988631
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHH
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~ 2278 (2612)
++..++|.+++++.++ ++.|.....+|..++...+.+.+.||
T Consensus 887 ---------------------------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~---------- 928 (1230)
T 1u6g_C 887 ---------------------------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPY---------- 928 (1230)
T ss_dssp ---------------------------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHH----------
T ss_pred ---------------------------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhh----------
Confidence 1234567777777654 56677777888887765443344444
Q ss_pred HhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 000051 2279 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 2358 (2612)
Q Consensus 2279 ~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l 2358 (2612)
.+++++.+++.+.+.++.+|..++.|||.+....+ +.++|.|.+.+
T Consensus 929 --------------------------------~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 929 --------------------------------VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp --------------------------------HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred --------------------------------HHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 44555555555555566677777777887765433 56777777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHH
Q 000051 2359 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 2435 (2612)
Q Consensus 2359 ~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll 2435 (2612)
.++++.+|..++.+++.++...+... .++.+.++..+...+.|++..+|.++..+|+.++...|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~-~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhh-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 77777778778877777776665554 4566677777777888999999999999999999887742 1333333333
Q ss_pred hhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhH
Q 000051 2436 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 2515 (2612)
Q Consensus 2436 ~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~ 2515 (2612)
+.....+...| ....+ -+++..+++.++|++|..|+++++.++... ..+.
T Consensus 1054 ~~~~~~~~~~~-----------------~v~~g--------p~k~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR-----------------EVEMG--------PFKHTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE-----------------EEEET--------TEEEEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe-----------------eeccC--------CcccccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 22111110000 00111 134456778899999999999999987543 2478
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHhhhcC--CcchhhhhHH----------HHHHH
Q 000051 2516 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPVRLAAE----------RCAVH 2583 (2612)
Q Consensus 2516 ~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~~~~~--~~~~vk~aae----------~~~~~ 2583 (2612)
++++.++.++.|+ .|+|..+..+|..++..+|..+.++++.+++++-+.+.. |...||+..| ||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999887533 4555666555 88888
Q ss_pred Hhcccccch
Q 000051 2584 AFQLTRGII 2592 (2612)
Q Consensus 2584 ~~~~~~~~~ 2592 (2612)
+.++.+.+.
T Consensus 1183 l~~~~~~~~ 1191 (1230)
T 1u6g_C 1183 LLTIPEAEK 1191 (1230)
T ss_dssp TTSSCSCSS
T ss_pred HHhCCCccc
Confidence 888876543
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-33 Score=409.67 Aligned_cols=742 Identities=13% Similarity=0.154 Sum_probs=567.8
Q ss_pred hHhHHHhh-cCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh---
Q 000051 1132 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--- 1206 (2612)
Q Consensus 1132 ~~~Ll~~l-~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~--- 1206 (2612)
+..++... .++|..+|+.|.+.|..+.+. .|+.+..+++.+.+ . ..+.++|..++..|+....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~-------~-----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID-------E-----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC-------T-----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC-------C-----CCChHHHHHHHHHHHhhccCcC
Confidence 35667777 789999999999999876554 23444333333321 0 1245789888888887642
Q ss_pred ------------h-hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHH
Q 000051 1207 ------------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 1272 (2612)
Q Consensus 1207 ------------~-~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~ 1272 (2612)
. ++++....+...++ .++.++++.||..+..++..+....+. ..|+.++|.+.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~---- 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q---- 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----
Confidence 1 33344445656664 578888999999999999888887655 47999999998888652 0
Q ss_pred hhhHHhHHHHHHHHHhhhhccC----CcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcchh------HHHHH
Q 000051 1273 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA------PTLVS 1340 (2612)
Q Consensus 1273 ~d~vr~~~i~~l~~La~~l~~~----~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~------~~li~ 1340 (2612)
+..+|+.++..++.+++.+... .+....+++.+...+.++ +++||.++.+|+..++...+... ..+++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 3467899999999999866533 356788899999999998 89999999999998765443221 22444
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 1411 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~------- 1411 (2612)
.+.+ +..++++..|..+..+|..++...+..... -. .+++.+...+.+. +..+|..++.++..+++...
T Consensus 228 ~l~~-~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCE-ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHH-HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4443 345567899999999999999876642211 11 5667677777776 78999999999999887631
Q ss_pred ----------ccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1412 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1412 ----------~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
..+.+++..++|.++..+.+ .+..+|.++..++..++..++...+..++|.+.+.+.+.+|+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778999999999874 3468999999999999988887677888999999999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhH
Q 000051 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 1553 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~ 1553 (2612)
|.+++.+++.++.+.. +.+.++++.++|.+...+.|+++.||.++++++++++..++.. +
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~------------------ 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES-I------------------ 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG-S------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh-c------------------
Confidence 9999999999998764 7788889999999999999999999999999999998765310 0
Q ss_pred HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC--CCcchhhHhhhHHHHHHHhcC-
Q 000051 1554 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 1630 (2612)
Q Consensus 1554 r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~--~~~l~~~l~~ll~~L~~~L~d- 1630 (2612)
...+.+..++|.+.+.+.+. +++|..++.+++.++..+++ +..+.+|++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 01123445666667777665 78999999999999987652 356889999999999999984
Q ss_pred -CCHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccC--------------CCHHHHHHHHHHHHHHHHHhChh
Q 000051 1631 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 1692 (2612)
Q Consensus 1631 -~~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~--------------~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2612)
.++.+|..+..+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4567777777776532 12335678888999999998874
Q ss_pred ---hHHhHhHHHHHhccCCCh-hhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1693 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1693 ---~l~~llp~l~~~~~~~~~-~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
+.+.+++.++..+.+.++ .+|+.++.+++.++..+|..|.||++.++|.++..+.+++..+|..+..++..++...
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 457788888888887777 8999999999999999999999999999999999998877778888777766655444
Q ss_pred hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHH
Q 000051 1769 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848 (2612)
Q Consensus 1769 ~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~ 1848 (2612)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 000 11223333
Q ss_pred HHHHccCC--CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000051 1849 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1915 (2612)
Q Consensus 1849 L~~~~~D~--~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~-----------~~~R~~A~~aL~~lv~~ 1915 (2612)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..+..+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 367999999999999998898999999999999999887432 45799999999999988
Q ss_pred hch---h---hhhhHHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhChhhHHHhHh-HHHHHHHHHhc---CCcHHH
Q 000051 1916 LGE---R---VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1981 (2612)
Q Consensus 1916 ~~~---~---~l~~llp~L~~~L~d~----~~~vR~~a~~aL~~li~~~~~~~l~~~l~-~ll~~l~~~L~---D~d~~V 1981 (2612)
+|+ . +.+.+++.+...+.|. +..+|..++.+++.++...++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 2 3566777777777664 88999999999999988885566778888 88998888765 567899
Q ss_pred HHHHHHHHHHHHH
Q 000051 1982 RESAGLAFSTLFK 1994 (2612)
Q Consensus 1982 r~~A~~al~~l~~ 1994 (2612)
++.|..+.+.+.+
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.3e-33 Score=398.58 Aligned_cols=726 Identities=15% Similarity=0.184 Sum_probs=556.3
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-h---
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~--- 1208 (2612)
..++....++|..+|+.|.+.+..+ +..|+.+..+...+... . ..+..+|..++..|+..... +
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~il~~~-----~------~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKL-----K------SEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTC-----T------TSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHhcc-----C------CCChHHHHHHHHHHHHHHHHccCCC
Confidence 3455555689999999999998654 34455443333333210 1 22458999999999977642 2
Q ss_pred CCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHHHHHHHh
Q 000051 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2612)
Q Consensus 1209 ~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La 1288 (2612)
+++....+...++ .+++|+++.||..+..++..+.+..+.+.|++++|.+.+.+... +..+|++++..++.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~------~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE------DYNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHH
Confidence 2222333555554 67899999999999999999988877888999999999988752 2467899999999988
Q ss_pred hhhccC------CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch----hHHHHHHHHHHhhcCCChHHHHHH
Q 000051 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE----APTLVSRLLDQLMKSDKYGERRGA 1358 (2612)
Q Consensus 1289 ~~l~~~------~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~----~~~li~~ll~~L~~~~~~~~R~~A 1358 (2612)
+..... ...+..+++.++..+++++++||..+.+++..++...... ...+++.++..+. +++...|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-DEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 765422 2336788999999999999999999999998777543322 2456666666544 4567899999
Q ss_pred HHHHHHHHhhhCcchhh-hhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHc------
Q 000051 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2612)
Q Consensus 1359 a~~L~~l~~~lg~~~l~-~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~--~~~~~~~~v~~ilp~ll~~l------ 1429 (2612)
+.+|..++...+..... -..+++.+.+.+.+. ++.+|..|+..+..+++. ..+.+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865432111 015778888888876 789999999988888763 23446789999999999998
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh
Q 000051 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1430 -----~D-----------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
+| .+..||.++..+++.++..+++..+..++|.+.+.+.+++|+.|.+|+.+++.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 45 34568999999999999988877778899999999999999999999999999999988888
Q ss_pred hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhh
Q 000051 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2612)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~ 1573 (2612)
..+++.++|.+...++|+++.||.+|+++++.+++.++.. .....
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------------------------~~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-----------------------------------PPDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-----------------------------------CTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-----------------------------------hHHHH
Confidence 8899999999999999999999999999999998754210 01123
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1574 l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
+..+++.+.+.+.|.++.+|..|+.++++++...+ ..+.||++.+++.+...+.+........+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 44567777777888889999999999999998754 3689999999999999999888888888999999999888754
Q ss_pred -----CchhhHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHhChhh---HHhHhHHHHHhcc----------------
Q 000051 1654 -----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTVY---FEHILPDIIRNCS---------------- 1706 (2612)
Q Consensus 1654 -----~~~~ll~~L~~---~L~~~~~~~~R~~aa~~L~~i~~~~g~~~---l~~llp~l~~~~~---------------- 1706 (2612)
+++.++|.+++ .+.++... .+ .+.++++.++..+|... ++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~-~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKD-LF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTT-HH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHH-HH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 56777887774 33333332 34 67889999999988753 3455554433321
Q ss_pred -CCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---hhhhhHHHH
Q 000051 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2612)
Q Consensus 1707 -~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~i~~llp~L 1780 (2612)
.++..++..++.+++.++..+|..|.+|+ +.+++.++.++.|+...||..+..+++.+...++.. +++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22566889999999999999999999998 789999999999999999999999999999887754 456789999
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccC--CCH
Q 000051 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSL 1858 (2612)
Q Consensus 1781 ~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D--~~~ 1858 (2612)
.+.+.+++..+|..++..+|++...++.. + .++...+++.++..+.+ ...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~-----------------------~-----~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE-----------------------M-----QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG-----------------------G-----GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh-----------------------H-----HHHHHHHHHHHHHHhCCCCCCc
Confidence 99998888899999999999987553200 0 12334566666665544 366
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhh--cCCC
Q 000051 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2612)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~--L~d~ 1935 (2612)
.+++.|+.+++.+....|..+.++++.+++..+..|.. .+...|..|..++..++..-+....+.+..++... ..++
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999988889999999999999964 56678999999999999987777666666444332 3345
Q ss_pred ChhHHHHHHHH
Q 000051 1936 SASRRQGVCIG 1946 (2612)
Q Consensus 1936 ~~~vR~~a~~a 1946 (2612)
.++.+......
T Consensus 808 ~~~l~~~~~~~ 818 (852)
T 4fdd_A 808 KDDLRDMFCKI 818 (852)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555444433
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.6e-32 Score=391.51 Aligned_cols=751 Identities=13% Similarity=0.124 Sum_probs=564.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHHH-HHHHHHhc-cc------------ccc-CCh
Q 000051 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TF------------VNT-VDA 1571 (2612)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r~-al~~L~~~-~~------------~~~-i~~ 1571 (2612)
.++++.+|..|.+.|.++.+. ....+++.+...+.+. +..+|. |...+-.. +. ... +..
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 567889999999999887542 1234566666666543 455663 33333221 00 011 455
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhh
Q 000051 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1572 ~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~ 1650 (2612)
.....+.+.+...+.+.+..+|..++.+++.++... .+ ....+.+++.+.+.+.++ ++.+|..+..+++.+++.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~-~p---~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE-LP---HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GG---GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhh-Cc---ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 566677788888899989999999999999988752 11 114578999999999988 9999999999999999977
Q ss_pred CCC------CchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHH
Q 000051 1651 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1651 g~~------~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ..+.+++.+.+.+.+.++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 654 45667777777776653 5678999999888765433221 12456777777788899999999999
Q ss_pred HHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh--------------------hchhhhhH
Q 000051 1719 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1777 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~--------------------~~~i~~ll 1777 (2612)
++..+....+..|.+|+. .+++.++..+.|.++.+|..++..+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888876531 11234466
Q ss_pred HHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHH
Q 000051 1778 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2612)
Q Consensus 1778 p~L~~~l~-------d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~ 1850 (2612)
|.+...+. |++|.+|..+...++.+... +|.+..+.+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 66655543 34577777777777766433 23233445566666
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-----hhhhhH
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1924 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-----~~l~~l 1924 (2612)
..+.+.+|.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 66788899999999999999998764 778889999999999999999999999999999999988764 357889
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhhC---hhhHHHhHhHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1925 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1925 lp~L~~~L~d~~~~vR~~a~~aL~~li~~~~---~~~l~~~l~~ll~~l~~~L~--D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
+|.+...++++ +.+|..+|.+++.++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....|..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99999999886 9999999999999988765 36677899999999999997 445899999999999999887753
Q ss_pred ---hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHH
Q 000051 2000 ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 2076 (2612)
Q Consensus 2000 ---~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 2076 (2612)
.+..++|.+++.|.+. +... ..++..- ..-....+......+++.+....|..+.+|++.++
T Consensus 535 ~~~~~~~l~~~l~~~l~~~-------------~~~~-~~i~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 599 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQT-------------MSVD-ENQLTLE-DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM 599 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHH-------------TTSC-GGGCCHH-HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------------Hhhh-cccCChh-hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2345556555544321 0000 0000000 00000001123556788888888989999999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHH
Q 000051 2077 PALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 2152 (2612)
Q Consensus 2077 ~~Ll~~L~~~~~-~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~ 2152 (2612)
+.++..+.+.+. .+|+.+..+++.++...+. +++..+++.+...++++++.+|..++.+++.+++..+..+.+|.+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 679 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH
Confidence 999999977766 8999999999998877654 467889999999998888999999999999999998888999999
Q ss_pred HHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccc---cccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2153 NMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2153 ~il~~L~~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
.+++.++..+.+++ .++|..+..+++.++...+... ++.+++.+.+.+... +|. +
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~---------------~~~----~- 739 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK---------------PEN----G- 739 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC---------------CSS----S-
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC---------------CCC----C-
Confidence 99999999998764 8999999999999998765543 233333333322110 000 0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC--hhhhhhchhhhhHHHHHHhcCC--C-CHhHHHHHHHHHHHHHHh
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR--F-PWQVKSAILSTLSIIIRK 2302 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~--~~~l~p~v~~i~~pLi~~l~~~--~-~~~vk~~al~~L~~L~~~ 2302 (2612)
..-.. .-...+|..++.+++.++...+ +..+.+|+..++..+.+.+.|. . ++.+|.+++.+++.++..
T Consensus 740 d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 740 TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 00000 0013578899999999998877 3569999999999888888763 1 789999999999999999
Q ss_pred c-CCCccCchH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000051 2303 G-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 2341 (2612)
Q Consensus 2303 ~-~~~l~p~lp-qL~~~~~k~L~d---~~~~vR~~Aa~aLg~L~ 2341 (2612)
+ |..+.+|++ ++++.+++.+.. .+..++..|..++|.+.
T Consensus 813 ~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 813 FPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9 889999999 999999998873 47889999999999874
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.9e-32 Score=392.93 Aligned_cols=707 Identities=15% Similarity=0.173 Sum_probs=539.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhc--cccccCChhhHhhHHHHHHHh
Q 000051 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQT--TFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1508 L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~--~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
..++++.+|+.|.+.|.++.. +|.+...+-.++..+.+.+..+|. |.-.+-+. .....+++.....+.+.+.+.
T Consensus 22 ~~s~d~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 22 SQSPDTTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HTCSCHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HhCcCHHHHHHHHHHHHHHHh---CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 346789999999999987743 466555555555544566677884 32222210 122335566677888899999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--------Cch
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFP 1656 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--------~~~ 1656 (2612)
+.+++..+|..++.+++.++..- . ....+.+++.+.+.+.++++.+|..+..+++.+++..++. .+.
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~ 173 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLN 173 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-C----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHH
Confidence 99999999999999999998852 2 2346789999999999999999999999999999987643 256
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh---hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1657 ~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
.++|.+++.+.+. +..+|..++.+++.++...+.. .++.+++.+.+.+.++++.+|..++.+|+.++...+..+.|
T Consensus 174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7888888877654 5678999999988776544432 34678888888889999999999999999999999999999
Q ss_pred hHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----hhhchhhhhHHHHhhccC-----------C-----------
Q 000051 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N----------- 1786 (2612)
Q Consensus 1734 ~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~-----~~~~~i~~llp~L~~~l~-----------d----------- 1786 (2612)
|++.+++.++..+.|.++.||..|++++..+++. +-...++.++|.+...+. |
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 9999999999999999999999999888776532 112244566777766552 2
Q ss_pred CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHH
Q 000051 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866 (2612)
Q Consensus 1787 ~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~ 1866 (2612)
.+|.+|..+...++.+. ..+|.+..+.+++.+...+.|.++.+|.+|+.
T Consensus 333 ~~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 45666666666665553 23333344556666666678889999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch----hhhhhHHHHHhhhcCCCChhHHHH
Q 000051 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQG 1942 (2612)
Q Consensus 1867 ~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vR~~ 1942 (2612)
+++.++.+.+..+.++++.+++.++..+.|+++.+|..++.+++.++...+. .....+++.+.+.+.++++.+|..
T Consensus 382 alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 382 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999988888899999999999999999999999999999999987654 357788899999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHH
Q 000051 1943 VCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTAL 2022 (2612)
Q Consensus 1943 a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al 2022 (2612)
++.+++.++...+.. +.+|++.+++.+...+.+.+......+..+++.+.+..|....
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~--------------------- 519 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN--------------------- 519 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC---------------------
T ss_pred HHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 999999998877654 7889999999999888766555555555555555544332110
Q ss_pred HHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHH---hcCCCCHHHHHHHHHHHH
Q 000051 2023 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLS---AMGDDDMDVQSLAKEAAE 2099 (2612)
Q Consensus 2023 ~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~---~L~~~~~~vr~~a~~al~ 2099 (2612)
-.+|++.++|.+++ .+.+.+++++ .+.++++
T Consensus 520 ---------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~ 553 (852)
T 4fdd_A 520 ---------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLS 553 (852)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHH
Confidence 02244555555553 3445555554 4566666
Q ss_pred Hhhhhccc---ccHHHHHHHHHhhc-----------------CCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHH
Q 000051 2100 TVTLVIDE---EGVESLVSELLKGV-----------------GDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST 2157 (2612)
Q Consensus 2100 ~l~~~~~~---~~l~~ll~~Ll~~l-----------------~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~ 2157 (2612)
.++..++. +++..+++.++..+ ..++...|..++.+++.+++..+.++.+|+ +.+++.
T Consensus 554 ~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 554 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 66665543 22334433332222 234677899999999999999988888887 789999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHH
Q 000051 2158 LIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQG 2237 (2612)
Q Consensus 2158 L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~ 2237 (2612)
++.++.|++..||..+..+++.++...+... -+++..++|.+.+.
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~ 678 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTN 678 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHT
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999886544221 13455678888888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCCCccCchHHHHH
Q 000051 2238 LISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIALKPFLPQLQT 2316 (2612)
Q Consensus 2238 L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~ 2316 (2612)
+..+..++|..|+.++|.++...+ ..+.||+..++++|++++.+.. +..++..+..++|.|+...+..+.||++++++
T Consensus 679 l~~~~~~v~~~a~~alg~i~~~~~-~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 679 LNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHG-GGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHH
Confidence 877788999999999999999997 6799999999999999998642 45799999999999999988889999999999
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHhccCC-hhHHHHHHHHhh
Q 000051 2317 TFIKCLQD-STRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL 2358 (2612)
Q Consensus 2317 ~~~k~L~d-~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~Ll~~l 2358 (2612)
.+++.|.+ .+.+.|..|..+|..++...|. +.+.+..++..+
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~ 801 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAV 801 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 99999987 4777899999999999876554 334444444544
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.9e-32 Score=396.72 Aligned_cols=748 Identities=15% Similarity=0.155 Sum_probs=553.4
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHHH-HH---HHHHhc----------ccccc
Q 000051 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SL---DILLQT----------TFVNT 1568 (2612)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r~-al---~~L~~~----------~~~~~ 1568 (2612)
+..+.++++.+|..|...|.++... ....+++.|+..+.++ +..+|. |. +..+.. .....
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887642 2345666777766553 355663 22 222210 00123
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L 1646 (2612)
+.......+.+.+.+.+.+.+..+ ..++++++.++.... ...+.+.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455566677777888888877778 889999999887521 1245678999999999998 999999999999999
Q ss_pred HhhhCC----CCchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhChhh----H-HhHhHHHHHhccCCChhhHhHH
Q 000051 1647 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTVY----F-EHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1647 ~~~~g~----~~~~~ll~~L~~~L~~~~-~~~~R~~aa~~L~~i~~~~g~~~----l-~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
++.+++ .+++.+++.+...+.+++ +..+|..++.+++.++..++... . +.+++.+...+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987653 356778888888887663 56789999999988776544321 1 2467777777788899999999
Q ss_pred HHHHHHhhhhhccchhhhHH-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh------------------------c
Q 000051 1717 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT------------------------T 1771 (2612)
Q Consensus 1717 ~~~l~~L~~~~g~~f~p~l~-~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~------------------------~ 1771 (2612)
+.++..+....++.|.||+. .+++.++..+.+.++.+|..+++.+..+++.... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred hhhhhHHHHhhccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHH
Q 000051 1772 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2612)
Q Consensus 1772 ~i~~llp~L~~~l~-------d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~ 1844 (2612)
.++.++|.+.+.+. |++|++|.++...++.+... +|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 12344555544432 45677777777777666433 22233445
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-----
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1918 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~----- 1918 (2612)
+++.+...+.|.++.+|.+|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...++
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 66666667789999999999999999998765 667789999999999999999999999999999999998764
Q ss_pred hhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-------------hhhHHHhHhHHHHHHHHHhcCC---cHHHH
Q 000051 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1982 (2612)
Q Consensus 1919 ~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~D~---d~~Vr 1982 (2612)
..++.+++.+...+.++ +.+|..++.+++.++...+ +..+.+|++.++|.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 35788889898888885 8999999999999987654 1346789999999999999765 45789
Q ss_pred HHHHHHHHHHHHHhChh---hhhhhHHHHHHhccCC---------CcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1983 ESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1983 ~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~---------~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
..+..+++.+....|.. .+..++|.+++.+... +.+..... .+.
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~------------------------~~~ 581 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN------------------------DLQ 581 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH------------------------HHH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH------------------------HHH
Confidence 99999999998887753 2334455554443210 00000000 001
Q ss_pred hhHHHHHHHHHHHhC-CChhhhHhhHHHHHHHhcCCCC--HHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcCCC
Q 000051 2051 AFNAHALGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN 2124 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g-~~l~~~l~~il~~Ll~~L~~~~--~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~~~ 2124 (2612)
.....+++.+....| ..+.+|++.++|.++..+.+.+ +.+|+.+..+++.++...+. +++..+++.+...+.+.
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc
Confidence 123456777777778 8899999999999999997664 47899999999998876543 56888999999998876
Q ss_pred -ChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc---cccHHHHHHH
Q 000051 2125 -QASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRD 2198 (2612)
Q Consensus 2125 -~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~---l~~lv~~l~~ 2198 (2612)
++.+|..++.+++.++...+..+.+|.+.+++.++..+.+ .+.+++..+..+++.++...+.+. ++.+++.+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 8999999999999999988888999999999999999986 467899999999999987665442 2333333322
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh---------hhhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~---------~~l~p~v 2269 (2612)
.+.... + +. ..-...+ ...+|..+..+++.++...+. ..+.||+
T Consensus 742 ~~~~~~---------------~---~~--d~~~~~~-------~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 742 ASQAQV---------------D---KS--DYDMVDY-------LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp HHTCCC---------------C---TT--CHHHHHH-------HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred HHhccC---------------C---CC--ChHHHHH-------HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 221000 0 00 0000000 125788888899988877653 4688999
Q ss_pred hhhhHHHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCC-CccCc-hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 000051 2270 IPITGPLIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALS 2344 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~-~l~p~-lpqL~~~~~k-~L~d~~~~vR~~Aa~aLg~L~~~~ 2344 (2612)
..+++.+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.
T Consensus 795 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 795 EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 998877766666654 678999999999999999988 78888 5778888888 999999999999999999997654
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.4e-32 Score=393.87 Aligned_cols=732 Identities=16% Similarity=0.182 Sum_probs=561.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-----------
Q 000051 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGM----------- 1650 (2612)
Q Consensus 1584 ~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~----------- 1650 (2612)
.+.+++.++|+.|.+.+..+... ..+.+.+.+...+.+ ..+.+|..|+..|.......
T Consensus 9 ~~~s~d~~~r~~A~~~L~~~~~~---------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 9 KTVSPDRLELEAAQKFLERAAVE---------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 34466789999999999876541 234466666666665 46899999999999876321
Q ss_pred ----CCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-hhHHhHhHHHHHhccCC--ChhhHhHHHHHHHHh
Q 000051 1651 ----GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYL 1723 (2612)
Q Consensus 1651 ----g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~L 1723 (2612)
.++....+.+.+++.+.++... . ..++++++.++...+. ..+++++|.+.+.+.++ ++.+|++++.+++.+
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~-~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSS-S-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHH-H-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 1112334555677777765544 4 7888999999887655 67889999999999888 899999999999999
Q ss_pred hhhh-ccchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhch-----hhhhHHHHhhccCCCchHHHHHH
Q 000051 1724 PRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSS 1795 (2612)
Q Consensus 1724 ~~~~-g~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~~-----i~~llp~L~~~l~d~~w~vR~~a 1795 (2612)
+..+ ++.|.++++.+++.+...+.++ +..+|..+++++..++..++... .+.+++.+.+.+.++++++|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9876 4568889999999999999987 68899999999988765443221 12467777777888899999999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHhc
Q 000051 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2612)
Q Consensus 1796 ~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~ 1874 (2612)
++.++.++...+.. +.. +.. .+++.++....|.+..||..|++.|..++..
T Consensus 238 ~~~l~~l~~~~~~~-----------------------~~~-----~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 238 LQNLVKIMSLYYQY-----------------------MET-----YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHSGGG-----------------------CHH-----HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH-----------------------HHH-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999987543210 111 122 4555555666788899999999999998864
Q ss_pred Ch---------------------hhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 000051 1875 TP---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2612)
Q Consensus 1875 ~~---------------------~~l~~~l~~ll~~L~~~L~-------~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp 1926 (2612)
.. ...+.+++.+++.++..+. +.++..|..|..+++.++...++.+.+.++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~ 369 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH
Confidence 21 1233456777888888775 3467899999999999999999888899999
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh-----hhh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAI 2001 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-----~~~ 2001 (2612)
.+...+.++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||..|+.+++.+....+. ..+
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 999999999999999999999998776665667788999999999999999999999999999999887653 345
Q ss_pred hhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhC--------------CC
Q 000051 2002 DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAG--------------PG 2067 (2612)
Q Consensus 2002 ~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g--------------~~ 2067 (2612)
+.++|.++..|.++ .. +...++.+++.++..++ ..
T Consensus 450 ~~~l~~l~~~l~~~-~~------------------------------v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~ 498 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PR------------------------------VASNVCWAFSSLAEAAYEAADVADDQEEPATYC 498 (876)
T ss_dssp HHHHHHHHHHTTSC-HH------------------------------HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred HHHHHHHHHHHcCC-HH------------------------------HHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence 66777777766552 10 01124456666666544 35
Q ss_pred hhhhHhhHHHHHHHhcCCC---CHHHHHHHHHHHHHhhhhccc---ccHHHHHHHHHhhcC-----------CCC----h
Q 000051 2068 LNFHLGTILPALLSAMGDD---DMDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVG-----------DNQ----A 2126 (2612)
Q Consensus 2068 l~~~l~~il~~Ll~~L~~~---~~~vr~~a~~al~~l~~~~~~---~~l~~ll~~Ll~~l~-----------~~~----~ 2126 (2612)
+.||++.++|.|+..+.+. +..+|..+.++++.++...+. +.+..+++.++..+. +++ +
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 8899999999999998654 467899999999999987764 345667776665543 222 4
Q ss_pred hHHHHHHHHHHHHHHhcc-cchhccHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Q 000051 2127 SIRRSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTS 2203 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~-~~~~~~~~~il~~L~~ll~d~d--~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~ 2203 (2612)
.+|..++.+++.++...+ .++.+|.+.+++.++..+++.. ..++..+..+++.++...+...
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~--------------- 643 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF--------------- 643 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGG---------------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhH---------------
Confidence 578899999999999888 8899999999999999998764 4788888888888775432211
Q ss_pred hhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcC
Q 000051 2204 RDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD 2282 (2612)
Q Consensus 2204 ~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~ 2282 (2612)
..++..++|.+...+.+. ++++|..+..+++.++...+ ..+.||+..+++.++..+.+
T Consensus 644 --------------------~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 644 --------------------LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp --------------------GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCC
Confidence 134455778888888876 88999999999999999988 67999999999999999976
Q ss_pred C-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHhc-c-----
Q 000051 2283 R-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDST-----------RTVRSSAALALGKLSAL-S----- 2344 (2612)
Q Consensus 2283 ~-~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~-----------~~vR~~Aa~aLg~L~~~-~----- 2344 (2612)
. .+.++|..++.+++.++..+|..+.+|+|.+.+.+.+.+.+.. ..+|..+..+++.++.. +
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~ 782 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQEN 782 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 3 3578999999999999999999999999999999999887652 27999999999877432 1
Q ss_pred -----CChhHHHHHHHHhh----hcC--CHHHHHHHHHHHHHHHHhcCC-CcChHH-HHHHHHHHHH-hhcCCCHHHHHH
Q 000051 2345 -----TRVDPLVGDLLSSL----QVS--DAGIREAILTALKGVLKHAGK-SVSSAV-KIRVYSVLKD-LVYHDDDHVRVS 2410 (2612)
Q Consensus 2345 -----~~~~~~l~~Ll~~l----~~~--d~~vr~~~l~AL~~vi~~~g~-~~~~~~-~~~i~~~L~~-~l~~~~~~vr~~ 2410 (2612)
..+.++++.++..+ .++ +..+|..++.+|..++...|. .+ .++ .+.++..+.. .+.++++.+|..
T Consensus 783 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~r~~ 861 (876)
T 1qgr_A 783 VHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp CCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhHHHH
Confidence 24556666666554 445 678999999999999998876 44 334 4455555555 788899999999
Q ss_pred HHHHHHHHHhhC
Q 000051 2411 AASILGIMSQCM 2422 (2612)
Q Consensus 2411 aa~~Lg~L~~~~ 2422 (2612)
|+.++|.+++..
T Consensus 862 a~~a~~~~~~~~ 873 (876)
T 1qgr_A 862 ARWATKELRKLK 873 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998654
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=6.7e-32 Score=374.11 Aligned_cols=565 Identities=18% Similarity=0.215 Sum_probs=449.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~ 1417 (2612)
.+..+++.|.+. ++..|..|+..++.++...|+.... ..+++.|.+.+ ++ ++.+|..+..+++.+....+. ..+
T Consensus 11 ~i~~l~~~l~s~-~~~~R~~A~~~l~~i~~~~~~~~~~-~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDELRNE-DVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHhhcc-cHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HHH
Confidence 466777777654 5789999999999998877765442 36888888766 44 688998888888776655442 246
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1418 v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
...++|.+...+.|+++.||+.|..++..++..+++..+ ..++|.+.....+++|..|..++.+++.++...+.. .
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 677889888888999999999999999999998888766 455666655566778899999999999988766543 3
Q ss_pred hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000051 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2612)
Q Consensus 1497 L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ 1576 (2612)
.+.++|.+..+++|+++.||..|+++|+.+++.++.+.. ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 567889899999999999999999999999987653211 123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC-Cc
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~-~~ 1655 (2612)
++|.+...++|.++.+|..|..+++.++...+. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677788888888887765432 1244567888888888888888988888888888877655 34
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh-----hHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1656 ~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
+.++|.+...+.++ ...+|..++.+++.++..+|.+ .++.++|.+...+.++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 56777777777644 4568888888888888887764 45778888888899999999999999999999999874
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
. +.+.++|.+...+.|++++||..+..++..+...++.+ ..+.++|.+...+.|.+|++|..+++.++.+...++
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 434 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-- 434 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--
Confidence 3 45678999999999999999999999999998877654 346789999999999999999999999998764431
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~ 1888 (2612)
.+. .+.+++.+...+.|.+..||..|+..++.++...+.. .+++.++|
T Consensus 435 -----------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 435 -----------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp -----------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 111 1246666777789999999999999999998866543 34677888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH
Q 000051 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2612)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll 1967 (2612)
.+...+.++++.+|..+..+++.++..+|.. +.+.++|.+...++|+++++|..++.+++.+....+.... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 8888888999999999999999999988765 5788999999999999999999999999999877665432 25778
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHH
Q 000051 1968 PTIRTALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1968 ~~l~~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
|.+...+.|+|++||..|+.+++.+
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 8888888999999999999999765
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.98 E-value=1.9e-29 Score=349.39 Aligned_cols=566 Identities=18% Similarity=0.222 Sum_probs=449.6
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip 1579 (2612)
+..++..+.++++.+|..|.++++.++..++.. .... ++|
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~---------------------------------------l~~ 52 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSE---------------------------------------LLP 52 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHT---------------------------------------HHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHH---------------------------------------HHH
Confidence 456777888999999999999999887654321 1223 344
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCc-hhh
Q 000051 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDL 1658 (2612)
Q Consensus 1580 ~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~-~~l 1658 (2612)
.+.... +.++++|..++..++.++..++. ..|...+++.+..++.|+++.||..|..+++.++...+++.+ +.+
T Consensus 53 ~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~----~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l 127 (588)
T 1b3u_A 53 FLTDTI-YDEDEVLLALAEQLGTFTTLVGG----PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127 (588)
T ss_dssp HHHHTC-CCCHHHHHHHHHHHTTCSGGGTS----GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred HHHHhc-CCcHHHHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 444433 45668888888888877765543 235677888888888899999999999999999987765433 345
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhH
Q 000051 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQV 1738 (2612)
Q Consensus 1659 l~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~i 1738 (2612)
+|.+..... ++....|..++..++.+....+....+.++|.+.+.+.++++.+|..++.+++.++..+|.. .+.+.+
T Consensus 128 ~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l 204 (588)
T 1b3u_A 128 VPLVKRLAG-GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEI 204 (588)
T ss_dssp HHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTH
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHH
Confidence 665554444 44566888888888888887777667888898889999999999999999999999988873 566789
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc-hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccC
Q 000051 1739 LPAILDGLADENESVRDAALGAGHVLVEHYATT-SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2612)
Q Consensus 1739 ip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~-~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~ 1817 (2612)
+|.+...+.|+++.||..|..++..+....+++ ..+.++|.+...+.|++|++|..+++.+|.+....
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------- 273 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV----------- 273 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH-----------
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999988877654 34568898888899999999999999999886432
Q ss_pred CCCCCccchHHHHHHHHHHhChh-hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHh
Q 000051 1818 GSDDEGASTEAHGRAIIEVLGRD-KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EIMPVLMNTLISSL 1894 (2612)
Q Consensus 1818 ~~ddd~~~~~~~~~~l~~~Lg~~-~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~~l~~ll~~L~~~L 1894 (2612)
|.+ ..+.+++.+...+.|.++.||..|...++.++...+.... .+++.++|.+...+
T Consensus 274 --------------------~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 274 --------------------GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp --------------------CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred --------------------CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 111 1234566666677899999999999999999987765432 57888889999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHH
Q 000051 1895 ASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2612)
Q Consensus 1895 ~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~ 1973 (2612)
.++++.+|..++.+++.++..+|.. ..+.++|.+...++|+++++|..++.+++.++...+... +.+.++|.+...
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~ 410 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVEL 410 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHH
Confidence 9999999999999999999988876 467899999999999999999999999999887666442 456788888899
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchh
Q 000051 1974 LCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAF 2052 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~~g~~~~-~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~ 2052 (2612)
+.|++..+|..++.+++.+....|...+ +.++|.++..|.++... +...
T Consensus 411 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~------------------------------Vr~~ 460 (588)
T 1b3u_A 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA------------------------------IREA 460 (588)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH------------------------------HHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH------------------------------HHHH
Confidence 9999999999999999999988887543 45677777777654320 1123
Q ss_pred HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-ccHHHHHHHHHhhcCCCChhHHHH
Q 000051 2053 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRS 2131 (2612)
Q Consensus 2053 ~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~~l~~ll~~Ll~~l~~~~~~vR~~ 2131 (2612)
+..+++.++..+|.. .+++.++|.+...+.+++..+|..++.+++.+...++. .....+++.++..++|+++.+|..
T Consensus 461 a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHH
Confidence 456667777766654 35688999999888899999999999999999887654 456789999999999999999999
Q ss_pred HHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 000051 2132 SAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 2181 (2612)
Q Consensus 2132 A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~ 2181 (2612)
++.+++.++...+.++. .+.+++.+..+++|+|.+||..|..|++.+.
T Consensus 539 a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 539 VAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99999999987665432 2567777778889999999999999998763
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=4.9e-22 Score=271.77 Aligned_cols=310 Identities=26% Similarity=0.476 Sum_probs=280.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~--~~~~ 1415 (2612)
.++.+++.+..++ ...++.++..++.++.+-+........+++.+.+.+.++++. ++|+.++..+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 3444556665544 567899999999998865433333347889999999988655 999999999997665 4789
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCC-ChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1416 ~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~-~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
||+..++|.++..++|....||++|..++..++..++++.++.++|.+++.|.+. +|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999765 799999999999999999999999
Q ss_pred hhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1495 ~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
..+|+++|.+.+++.|..++|..+|..++..++..+.|.++.+++|.|++++.+| +.+.+|++.|..|+|+..+++|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecchhH
Confidence 9999999999999999999999999999999999999999999999999999999 458899999999999999999999
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCC
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~ 1652 (2612)
+.++|.|.|+|.+++..+++.++-+++|||+++.+|.+..||+|.++|.+.+.... .+|++|+.|.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999997763 6899999999999999887554
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=6.5e-18 Score=245.41 Aligned_cols=652 Identities=12% Similarity=0.116 Sum_probs=404.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcC--C
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~--~ 1126 (2612)
+++.++|.+++|||+.+| |+++|++... .|.....+..+.. ..+.+..+|.+|. ..|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-----~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLET-----QDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHT-----STTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhc-----CCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468899999999999999 9999987631 1322333333322 2334566777764 4575321 1
Q ss_pred CCCCC----h-HhHHHhhcCCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000051 1127 DFGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2612)
Q Consensus 1127 ~~~~~----~-~~Ll~~l~~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~a 1200 (2612)
.++++ + ..+++.+.+++..+|++++++++.++. .+|+.|++++..+.+.. .+ .+...++++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SN------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CS------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CC------CCHHHHHHHHHH
Confidence 23332 4 577888877779999999999999876 58888888888887642 11 123578899999
Q ss_pred HHHhhhhhCC--CC---hhH-----------HHHHHH--hhhcCCCcH---HHH--HHHHHHHHHHHHhh-----Cc---
Q 000051 1201 LHSAADVLRT--KD---LPV-----------IMTFLI--SRALADTNA---DVR--GRMLNAGIMIIDKH-----GR--- 1249 (2612)
Q Consensus 1201 l~~~~~~~~~--~~---~~~-----------i~~~li--~~~l~d~~~---~VR--~~~~~a~~~~i~~~-----g~--- 1249 (2612)
+..+++.+.. .. ... ++..+. ..++.+... .+| ..++.++..++... ..
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999886542 11 011 112211 123444322 244 12222222222211 11
Q ss_pred chhhhhHHHHHHHhccCCC--Ch-------HHhhhHHhHHHHHHHHHhhh-hccCCcchHhHHHHHHHhcC-----CCCH
Q 000051 1250 DNVSLLFPIFENYLNKKAS--DE-------EKYDLVREGVVIFTGALAKH-LAKDDPKVHAVVDKLLDVLN-----TPSE 1314 (2612)
Q Consensus 1250 ~~~~~Llp~~~~~l~~~~~--~~-------~~~d~vr~~~i~~l~~La~~-l~~~~~~~~~i~~~L~~~L~-----~~~~ 1314 (2612)
+++...++.|.+++....+ .. ...+.+|..++..+..+... .+.-.+.++.+++.++..+. ...+
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 2345667777777754211 00 11234566666666655532 22123556667776666664 3356
Q ss_pred HHHHHHHhhhHHhHhhhc--------chhHHHH-HHHHHHhh----------------------cCCChHHHHHHHHHHH
Q 000051 1315 AVQRAVSSCLSPLMQSMQ--------DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGLA 1363 (2612)
Q Consensus 1315 ~Vq~~~~~~L~~lv~~~~--------~~~~~li-~~ll~~L~----------------------~~~~~~~R~~Aa~~L~ 1363 (2612)
.++..+.+.+..++.... +....++ ..++..+. .++.+..|+.|...|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 676666666655542211 1112233 22222221 1223467889999999
Q ss_pred HHHhhhCcchhhhhcHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHhc---ccchh-----hHHHH-HHHHHHHc
Q 000051 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKLG---RLFEP-----YVIQM-LPLLLVAF 1429 (2612)
Q Consensus 1364 ~l~~~lg~~~l~~~~i~~~L~~~i~~-----~~~~~~R~~Al~al~~L~~~~~---~~~~~-----~v~~i-lp~ll~~l 1429 (2612)
.++...|...+. .+++++.+.+.. ..+|+.|++|+++++.++++.. ....+ .+..+ ...++..+
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 999988844443 577777777761 3379999999999999987521 11111 22222 23345556
Q ss_pred CCC---CHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhh-----------Cchhhhh
Q 000051 1430 SDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQLSQ 1495 (2612)
Q Consensus 1430 ~D~---~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~-----------~p~~l~~ 1495 (2612)
.|+ ++.||.+|+.+++.+.+.+++.....++|.+++.|.+++.+++..|+.+|..+++. .++.+.+
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 666 99999999999999998888778899999999999988899999999999998873 2456889
Q ss_pred hhchhHHHHhhhhcCCC---H--HHHHHHHHHHHHHHhhcCC---hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccc
Q 000051 1496 CLPKIVPKLTEVLTDTH---P--KVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2612)
Q Consensus 1496 ~L~~ivp~L~~~L~D~~---~--~VR~aA~~aL~~l~~~~~~---~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~ 1567 (2612)
+++.+++.++.+++... + .....+..|++.++...++ |++..+++.+...+
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l--------------------- 603 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV--------------------- 603 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------------------
Confidence 99999999999987641 1 1446778888887776653 23333333333221
Q ss_pred cCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1568 TVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1568 ~i~~~~l~~iip~L~~~l~-d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
....+ ..+...+..++++++.++.. ..++.+.++.+.++|.+...+.....+....+...++.+
T Consensus 604 --------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 604 --------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp --------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred --------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 11111 23456667788889888876 345677889999999999999887778888999999998
Q ss_pred HhhhC--CCCchhhHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHhChhhH--HhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1647 IRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1647 ~~~~g--~~~~~~ll~~L~--~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
..... .+++..++|.+. ..+.... ........+...+...+.... +.++..+.+...+.. .++.++.++
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~~ll 743 (960)
T 1wa5_C 669 VEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLL 743 (960)
T ss_dssp HHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHHHHH
Confidence 87652 125667777776 5554432 112333444444433332211 223322223333333 348899999
Q ss_pred HHhhhhhccc-hhhhHHhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHHHhh
Q 000051 1721 KYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1721 ~~L~~~~g~~-f~p~l~~iip~ll~~L~d~-~~~VR~~Al~al~~lv~~~~ 1769 (2612)
+.++..+|.. |.||++.+++.++..+..+ .+.++...+..+..++-.++
T Consensus 744 ~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 744 EHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp HHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcC
Confidence 9999999988 9999999999999998765 35555455444444443333
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.84 E-value=1.2e-16 Score=233.72 Aligned_cols=726 Identities=14% Similarity=0.158 Sum_probs=438.8
Q ss_pred hHHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCC
Q 000051 1056 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2612)
Q Consensus 1056 ~~~~~~ll~~-~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2612)
.+++.++|++ ..++|+..|++|++.|++.... |....+...+. ..+.+..+|.+|. ..|.....
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 3457788888 4568999999999999875321 22222332322 2355666776654 35765432
Q ss_pred CCCCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHH
Q 000051 1127 DFGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201 (2612)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al 1201 (2612)
+-.+.+ ..+++.+.+ ....+|++.+.+++.++. .||+.|++++..+.+...... +. ..+...+..+...|
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~----~~-~~~~~~~~~~l~iL 170 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAED----SP-VDGQGRCLALLELL 170 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhc----cC-CCcHHHHHHHHHHH
Confidence 222235 567776654 468999999999999875 588888888888877542100 00 00123456666666
Q ss_pred HHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHH
Q 000051 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 1281 (2612)
Q Consensus 1202 ~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i 1281 (2612)
..+++.+.+... ..-|... ++..=....+.+++.+..++...... +.++..+.
T Consensus 171 ~~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l 223 (963)
T 2x19_B 171 TVLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVL 223 (963)
T ss_dssp HHHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHH
T ss_pred HhCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHH
Confidence 666643211110 0001000 01000123566777777777643211 12444444
Q ss_pred HHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhc-chhHHHHHHHHHHhh----------cCC
Q 000051 1282 IFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSD 1350 (2612)
Q Consensus 1282 ~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~-~~~~~li~~ll~~L~----------~~~ 1350 (2612)
..+..... ++........+++.++..+. .++++..+.+|+..++.... ......+..++..+. ..+
T Consensus 224 ~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (963)
T 2x19_B 224 KCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG 300 (963)
T ss_dssp HHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC
Confidence 44432222 21111112567777777775 45688889999988876421 111223222222211 122
Q ss_pred ChHHHHHHHHHHHHHHhhhC---------cchhhhhcHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh-------
Q 000051 1351 KYGERRGAAFGLAGVVKGFG---------ISSLKKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL------- 1410 (2612)
Q Consensus 1351 ~~~~R~~Aa~~L~~l~~~lg---------~~~l~~~~i~~~L~~~i~~----~~~~~~R~~Al~al~~L~~~~------- 1410 (2612)
|.......+..+..++.... ...+. .+++.+.++..+ ..+..++..++..+..+++..
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 378 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEK 378 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 33344444555555443211 11111 455666655554 124445666666666666532
Q ss_pred ----cccchhhHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhh----
Q 000051 1411 ----GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL---- 1467 (2612)
Q Consensus 1411 ----~~~~~~~v~~ilp~ll~~l~D~~~---------------~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L---- 1467 (2612)
...+.+++.++++.++..+..++. ..|.++.+++..+....+...+..+++.+.+.+
T Consensus 379 ~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~ 458 (963)
T 2x19_B 379 QAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE 458 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
Confidence 234567888888888887753221 236677778888877776666666666666666
Q ss_pred cCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcC
Q 000051 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT 1547 (2612)
Q Consensus 1468 ~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~ 1547 (2612)
++.+|+.+.+++.+++.++.+..+.....++.+++.+..+ .++++.||..++++++++++.+...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~-------------- 523 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH-------------- 523 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC--------------
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 6679999999999999999887665556677788755544 4468999999999999998765310
Q ss_pred CCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHH
Q 000051 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2612)
Q Consensus 1548 d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~ 1627 (2612)
...+..+++.+..++.+ +.++..|+.++..++... .+.+.||++.++..+...
T Consensus 524 -----------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 524 -----------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp -----------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHH
Confidence 01223344455555544 577888999999999754 357899999999999999
Q ss_pred hcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----cCCCHHHH---HHHHHHHHHHHHHhChh--
Q 000051 1628 LVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVER---SGAAQGLSEVLAALGTV-- 1692 (2612)
Q Consensus 1628 L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~----~~~~~~~R---~~aa~~L~~i~~~~g~~-- 1692 (2612)
+.. -....|..+.+++|.++...+++ ++..+++.+...+. +..+...+ .....+++.++..++..
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 885 36789999999999999877622 45666666555443 22223233 24556778888776521
Q ss_pred -----------------------hHHhHhHHHHHhccC--CChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1693 -----------------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1693 -----------------------~l~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
..+.++|.+.+.+.. .++.+++.++.++..++..+|+.|.||++.+++.++....
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS 736 (963)
T ss_dssp C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH
Confidence 234556655554432 4678999999999999999999999999999998877654
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhc-----hhhhhHHHHhhc-------cCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000051 1748 DENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDG-------IFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~-----~i~~llp~L~~~-------l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~ 1815 (2612)
.... ...+..+..++..++.. .+..++..+... ..+++..+|.+...+++.++..++...
T Consensus 737 ~~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~----- 808 (963)
T 2x19_B 737 TIPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLF----- 808 (963)
T ss_dssp HSCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGG-----
T ss_pred cCCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHH-----
Confidence 3211 13445566666644432 222222222211 122346688899999998886654221
Q ss_pred cCCCCCCccchHHHHHHHHHHhChhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh--hh----HHHHHHHHHH
Q 000051 1816 EGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP--KT----LKEIMPVLMN 1888 (2612)
Q Consensus 1816 ~~~~ddd~~~~~~~~~~l~~~Lg~~~-~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~--~~----l~~~l~~ll~ 1888 (2612)
+.... +..++..+..++...+..+..++++.|..++...+ .. +..+.+.++.
T Consensus 809 ---------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 867 (963)
T 2x19_B 809 ---------------------LCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLI 867 (963)
T ss_dssp ---------------------GCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHH
T ss_pred ---------------------cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 11111 44566666666778888999999999999987543 22 2345666666
Q ss_pred HHHHHhcC
Q 000051 1889 TLISSLAS 1896 (2612)
Q Consensus 1889 ~L~~~L~~ 1896 (2612)
.++..+.+
T Consensus 868 ~l~~~l~~ 875 (963)
T 2x19_B 868 AVLEAIGG 875 (963)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 66666654
No 14
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.84 E-value=2.2e-17 Score=241.36 Aligned_cols=717 Identities=13% Similarity=0.125 Sum_probs=415.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCCCC
Q 000051 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~~~ 1128 (2612)
+++.++|+.+.+||+..|++|++.|++... .|....+...+ ...+.+..+|..|. ..|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-----~p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEA-----SPQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTT-----STHHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 457778888999999999999999988642 12222233332 23355666776654 3465433222
Q ss_pred CCCh-HhHHHhhcC---CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000051 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2612)
Q Consensus 1129 ~~~~-~~Ll~~l~~---~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~ 1203 (2612)
.+.+ ..+++.+.+ ....+|++++++++.++. .|| .|++++..+.+....... +.. ++...+..+...|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~~-~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PNV-SADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---ccC-CCHHHHHHHHHHHHH
Confidence 2235 566766543 368999999999999875 477 888888888776432100 000 012356667777776
Q ss_pred hhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCC--ChHHhhhHHhHHH
Q 000051 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2612)
Q Consensus 1204 ~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~--~~~~~d~vr~~~i 1281 (2612)
+++.+... . -.++...++.. +. ...+.++++|.+++..... .......++..+.
T Consensus 155 l~EEi~~~-----------~-~~~~r~~~~~~--------l~----~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEAQVI-----------H-TSVKRVVLRAE--------IA----KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHHHHC-----------C-CSSCHHHHHHH--------HH----TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHhcc-----------C-cHHHHHHHHHH--------HH----HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 66421100 0 00111111111 11 1345566666666653211 1111224566666
Q ss_pred HHHHHHhh--hhccCCcchHhHHHHHHHhc----------------CCCCHHHHHHHHhhhHHhHhhhc-ch----hHHH
Q 000051 1282 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2612)
Q Consensus 1282 ~~l~~La~--~l~~~~~~~~~i~~~L~~~L----------------~~~~~~Vq~~~~~~L~~lv~~~~-~~----~~~l 1338 (2612)
..++.... +++.. ....+++.++. + .+++++++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 66655444 23322 34556666665 4 12467899999999998886422 11 1233
Q ss_pred HHHHHHHh---h---cCCCh---HHHHHHHHHHHHHHhhhCc--------------chhhhhcHHHHHHHHHhC----CC
Q 000051 1339 VSRLLDQL---M---KSDKY---GERRGAAFGLAGVVKGFGI--------------SSLKKYGIAATLREGLAD----RN 1391 (2612)
Q Consensus 1339 i~~ll~~L---~---~~~~~---~~R~~Aa~~L~~l~~~lg~--------------~~l~~~~i~~~L~~~i~~----~~ 1391 (2612)
++.+++.. . ..+|. ......+..+..+...... ..+ ..+++.+..+... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHcCCCCCCc
Confidence 33333211 1 12232 3444555555555432110 111 1345555555533 22
Q ss_pred CHHHHHHHHHHHHHHHHHh------------cccchhhHHHHHHHHHHHcCCC--------C-------HHHHHHHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFSDQ--------V-------VAVREAAECAA 1444 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~------------~~~~~~~v~~ilp~ll~~l~D~--------~-------~~VR~aa~~al 1444 (2612)
+..++..++..+..+++.. ...+.+++..+++.++..+.-+ + ...|.++.+++
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l 445 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTF 445 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHH
Confidence 5567777887777776622 1234677888888888877311 1 14678888888
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcC-----CChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh-cCCCHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSA 1518 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-----~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L-~D~~~~VR~a 1518 (2612)
..++..++...+..+++.+-+.+.. .+|+.+.+++.+++.+++++.+.....++.+++.+..+. .|.++.||..
T Consensus 446 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 446 MYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 8888877755556666666666654 799999999999999999877666677888888444443 2679999999
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
++++++++++.+.+. + ..+..++|.+.+++ + +.++..|+.
T Consensus 526 a~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 526 ALETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHH
Confidence 999999999876421 0 12233444455555 2 467888999
Q ss_pred HHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhc----c
Q 000051 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2612)
Q Consensus 1599 ~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~----~ 1668 (2612)
++.++++... +.+.||++.++..+.+.+.. .....+..+.++++.++...+++ ++..+++.++..+. .
T Consensus 566 al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997643 47899999999999999987 46899999999999999877633 45555555554433 2
Q ss_pred CC-CHHHHH---HHHHHHHHHHHHhChh----------------hHHhHhHHHHHhccC--CChhhHhHHHHHHHHhhhh
Q 000051 1669 DN-SNVERS---GAAQGLSEVLAALGTV----------------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRS 1726 (2612)
Q Consensus 1669 ~~-~~~~R~---~aa~~L~~i~~~~g~~----------------~l~~llp~l~~~~~~--~~~~vR~~~~~~l~~L~~~ 1726 (2612)
.. +...+. .....++.++..++.. ..+.++|.+...+.. .+..+.+.++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 222233 3334456666655421 235567766665543 3678999999999999999
Q ss_pred hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000051 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2612)
Q Consensus 1727 ~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~ 1806 (2612)
+|.+|.||++.+++.++..+..... ..++..+..++..++.+. .+.+.+ .+++..++
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~--~~~~~l---------------~~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE--GCKPLM---------------QQLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-------HHH---------------HHHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc--chHHHH---------------HHHHHHHH---
Confidence 9999999999999999888775332 224555555554443310 000000 00111100
Q ss_pred cCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHhcChhhHH--H
Q 000051 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--E 1881 (2612)
Q Consensus 1807 ~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~---~~D~~~~VR~aA~~~l~~l~~~~~~~l~--~ 1881 (2612)
..++..+..+ ..+...++++.....+..+..+.|..+. +
T Consensus 781 ------------------------------------~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~ 824 (971)
T 2x1g_F 781 ------------------------------------QHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT 824 (971)
T ss_dssp ------------------------------------HHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT
T ss_pred ------------------------------------HHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc
Confidence 0001000000 0112567899999999999998887765 5
Q ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000051 1882 I-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2612)
Q Consensus 1882 ~-l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~ 1915 (2612)
. ++.+++..+..+..++......+...+..++..
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 6 788888888888766666666777788777655
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.82 E-value=6.9e-16 Score=224.15 Aligned_cols=709 Identities=10% Similarity=0.099 Sum_probs=423.8
Q ss_pred HhHHHhhcCCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-hC--
Q 000051 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR-- 1209 (2612)
Q Consensus 1133 ~~Ll~~l~~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~-~~-- 1209 (2612)
..+|....++|..+| |.+.+..+ +..|+.+..++..+.+. ..+-++|..++..|+..... +.
T Consensus 8 ~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~------------~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 8 AKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST------------NLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT------------TSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 344555557777777 56565444 66777666555544310 12346888888888877542 22
Q ss_pred -------CCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCChHHhhhHHhHHHH
Q 000051 1210 -------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2612)
Q Consensus 1210 -------~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~~~~~d~vr~~~i~ 1282 (2612)
++....+-+.++ .++.+....||..+..++..++.....+.|+.++|.+.+.+...+ ...++++..
T Consensus 73 ~~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL~ 145 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVLT 145 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 122223444444 444445589999999999988887666789999999988886532 235677888
Q ss_pred HHHHHhhhhcc--CC----cc----hHhHHHHH-------HHhcCCCCH---HHH------HHHHhhhHHhHhhh-c---
Q 000051 1283 FTGALAKHLAK--DD----PK----VHAVVDKL-------LDVLNTPSE---AVQ------RAVSSCLSPLMQSM-Q--- 1332 (2612)
Q Consensus 1283 ~l~~La~~l~~--~~----~~----~~~i~~~L-------~~~L~~~~~---~Vq------~~~~~~L~~lv~~~-~--- 1332 (2612)
.+..+.+.... .. +. +....+.+ ...+.++.. .++ ..+.+++..+.... .
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 88888865431 11 11 12222222 223454422 122 23444443332111 1
Q ss_pred -chhHHHHHHHHHHhhcC--------C--C----hHHHHHHHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhC----CC
Q 000051 1333 -DEAPTLVSRLLDQLMKS--------D--K----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD----RN 1391 (2612)
Q Consensus 1333 -~~~~~li~~ll~~L~~~--------~--~----~~~R~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~----~~ 1391 (2612)
+....+++.++..+... + + +..|+.+..++..++...+.. +.. ..+++.+.+.+.+ ..
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~-f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDV-FGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcC
Confidence 12244554444444321 0 0 345778888888887654432 211 1344444444431 22
Q ss_pred CHHHHHHHHHHHHHHHHHh--cccch--hhHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECA 1443 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~--~~~~~--~~v~~il-p~ll~~l~-----------------------D~~~~VR~aa~~a 1443 (2612)
+...+..++..+..+++.- ...|. +++..++ +.++..+. +....+|.+|..+
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4566777777777766422 23454 7888888 67776552 1122578899999
Q ss_pred HHHHHHhhcHHhHHhHHHHHHhhhc------CCChhhHHHHHHHHHHHHhhC--ch-hhhh-----hhchh-HHHHhhhh
Q 000051 1444 ARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVL 1508 (2612)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~------~~~w~~r~~a~~~L~~ia~~~--p~-~l~~-----~L~~i-vp~L~~~L 1508 (2612)
++.++...+...+..+++.+.+.+. +.+|+.|.+|+.+++.++... ++ .... .+..+ ...+...+
T Consensus 385 L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l 464 (960)
T 1wa5_C 385 LKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (960)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh
Confidence 9999988876666677777766665 678999999999999998632 11 1111 12222 22345556
Q ss_pred cCC---CHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhh
Q 000051 1509 TDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585 (2612)
Q Consensus 1509 ~D~---~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l 1585 (2612)
+|+ ++.||..|+++++++++.+....+.. +++.+.+++
T Consensus 465 ~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~L 505 (960)
T 1wa5_C 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATFL 505 (960)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHHT
T ss_pred cCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHHh
Confidence 777 99999999999999987653222233 444555555
Q ss_pred cCCCHHHHHHHHHHHHHHhhccC---------CCCcchhhHhhhHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhhC
Q 000051 1586 RERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---PE--VRSVAARAIGSLIRGMG 1651 (2612)
Q Consensus 1586 ~d~s~~vr~~a~~~l~~l~~~~~---------~~~~l~~~l~~ll~~L~~~L~d~~---~~--VR~~A~~aL~~L~~~~g 1651 (2612)
.+.+..+|..|+.++.+++.... ..+.+.||++.+++.+..++.... +. ....+..+++.++..++
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 56667889999999999887432 134588999999999999998741 11 44688999999999888
Q ss_pred CC---CchhhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHhChhh----HHhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1652 EE---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1652 ~~---~~~~ll~~L~~~L~~----~~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
++ ++..+++.+...+.. ......+.....+++.++...+++. .+.++|.+...+........+.++..+
T Consensus 586 ~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 586 DSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 76 456677766655542 3344456677888988888766543 356777777777666667888888888
Q ss_pred HHhhhhhccchhhhHHhHHHHHH--hhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1721 KYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l~~iip~ll--~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
..+.... +.|.+|+..++|.++ ..+.... .+ ....+.+..++...++. ++ . +
T Consensus 666 ~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~--------- 719 (960)
T 1wa5_C 666 AFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--L--------- 719 (960)
T ss_dssp HHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--S---------
T ss_pred HHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--H---------
Confidence 8888776 778889888999888 6555431 22 12223333322221110 00 0 0
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~ 1878 (2612)
+.++..+.....+.. .+..|..+++.++.+.|..
T Consensus 720 --------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~ 753 (960)
T 1wa5_C 720 --------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMN 753 (960)
T ss_dssp --------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHH
T ss_pred --------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHH
Confidence 001111111112222 2367888899999988877
Q ss_pred -HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhchhh-h--------hhHHH----HHhhhcCC-CChhHHHH
Q 000051 1879 -LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERV-L--------PSIIP----ILSRGLKD-PSASRRQG 1942 (2612)
Q Consensus 1879 -l~~~l~~ll~~L~~~L~~~-~~~~R~~A~~aL~~lv~~~~~~~-l--------~~llp----~L~~~L~d-~~~~vR~~ 1942 (2612)
+.+|++.+++.++..+... ....+......+..++-..++.. . ..+.. .+...+.. .+..-|.-
T Consensus 754 ~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~ 833 (960)
T 1wa5_C 754 RLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKI 833 (960)
T ss_dssp HHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHH
Confidence 9999999999999998755 45555455555555544444431 1 11112 22222221 34566777
Q ss_pred HHHHHHHHHHhhC--hhhHHHhHhHHHHHHHHHhc
Q 000051 1943 VCIGLSEVMASAG--KSQLLSFMDELIPTIRTALC 1975 (2612)
Q Consensus 1943 a~~aL~~li~~~~--~~~l~~~l~~ll~~l~~~L~ 1975 (2612)
++.++..++.... +..+.+.+..++..+...+.
T Consensus 834 ~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 834 ALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 8888888776431 23334455666666655554
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=2.6e-17 Score=220.07 Aligned_cols=391 Identities=16% Similarity=0.240 Sum_probs=299.2
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh-----------
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 1649 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~----------- 1649 (2612)
..+.+++..+|+.|.+.+..+... + .+..+..+...+.+ ..+.+|..|+..|..++..
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 344566789999999999886541 0 22344455555544 3789999999999998743
Q ss_pred ----hCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh-hHHhHhHHHHHhccCC--ChhhHhHHHHHHHH
Q 000051 1650 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 1722 (2612)
Q Consensus 1650 ----~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~l~~~~~~~--~~~vR~~~~~~l~~ 1722 (2612)
++++....+...++..+.++... . ..++.+++.++...++. .+++++|.+++.+.+. ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 22223345666777777766544 4 67888999998887664 7889999999999888 89999999999999
Q ss_pred hhhhh-ccchhhhHHhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHHHhhhc----h-hhhhHHHHhhccCCCchHHHHH
Q 000051 1723 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1794 (2612)
Q Consensus 1723 L~~~~-g~~f~p~l~~iip~ll~~L~d~--~~~VR~~Al~al~~lv~~~~~~----~-i~~llp~L~~~l~d~~w~vR~~ 1794 (2612)
++..+ +..+.+|++.+++.++.++.|+ +..||..|++++..++..+... . .+.+++.+.+...+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99877 6678899999999999999998 7899999999998765432211 1 1336777777788889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~-~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+++.++.+....+.. ++ ++.. .+++.+.....|.+..||..|+..|..++.
T Consensus 237 ~~~~l~~l~~~~~~~---------------------------~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQY---------------------------ME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGG---------------------------CT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------------------HH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 999999987543211 00 1122 344445555678889999999999999886
Q ss_pred cC---------------------hhhHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhchhhhhhHH
Q 000051 1874 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1925 (2612)
Q Consensus 1874 ~~---------------------~~~l~~~l~~ll~~L~~~L~~-------~~~~~R~~A~~aL~~lv~~~~~~~l~~ll 1925 (2612)
.. ...++++++.++|.++..+.+ .++..|..|..+|+.++...|..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123445678888888888853 35689999999999999999988899999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh-----h
Q 000051 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 2000 (2612)
Q Consensus 1926 p~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~-----~ 2000 (2612)
|.+...++++++.+|.+++.+++.+...+.+..+.++++.++|.+...+.|+++.||.+|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987765545567788999999999999999999999999999999887653 3
Q ss_pred hhhhHHHHHHhc
Q 000051 2001 IDEIVPTLLHAL 2012 (2612)
Q Consensus 2001 ~~~ilp~Ll~~L 2012 (2612)
+++++|.++..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555444
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.78 E-value=4.2e-17 Score=218.10 Aligned_cols=395 Identities=13% Similarity=0.143 Sum_probs=294.2
Q ss_pred hHhHHHhhcCCCHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000051 1132 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 1207 (2612)
Q Consensus 1132 ~~~Ll~~l~~~~~~vR~~aa~ala~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~al~~~~~~--- 1207 (2612)
+..++..+.++|..+|+.|.+.|..+... .|+.+..++..+.+ . +.+..+|..++..|+.+...
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-------~-----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN-------P-----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc-------C-----CCChHHHHHHHHHHHHhccccch
Confidence 34677778899999999999999876543 44444444433321 0 23468999999999987531
Q ss_pred ------------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHHhh
Q 000051 1208 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2612)
Q Consensus 1208 ------------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~~d 1274 (2612)
++++....+...++ ..+.+.++.| ..+..++..+....+. ..|+.++|.+.+.+.... .+.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~----~~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN----STE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT----CCH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC----CCH
Confidence 22222334555554 5677877788 7888888888777655 479999999988887521 034
Q ss_pred hHHhHHHHHHHHHhhhhcc--CCcchHhHHHHHHHhcCCC--CHHHHHHHHhhhHHhHhhhcchh-----HHH-HHHHHH
Q 000051 1275 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PTL-VSRLLD 1344 (2612)
Q Consensus 1275 ~vr~~~i~~l~~La~~l~~--~~~~~~~i~~~L~~~L~~~--~~~Vq~~~~~~L~~lv~~~~~~~-----~~l-i~~ll~ 1344 (2612)
.+|+++...++.+++.... ..+..+.+++.+...+.++ +++||..+++|+..++....+.. ..+ ++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~- 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC- 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-
Confidence 6789999999999876522 2466788999999999998 79999999999988765443211 122 33333
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhhhCcchhh-hh-cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh------------
Q 000051 1345 QLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 1410 (2612)
Q Consensus 1345 ~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~-~~-~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~------------ 1410 (2612)
.+..+.+...|..++.+|..++...+..... -. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3445556789999999999999866532111 12 5777777777776 7899999999999988753
Q ss_pred ---------cccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhh
Q 000051 1411 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2612)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D-------~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~ 1474 (2612)
...+.+++..++|.++..+.+ .+..+|.+|..+++.++..++...+..++|.+.+.+.+.+|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456778999999998853 3458999999999999998886566888898889999999999
Q ss_pred HHHHHHHHHHHHhhCc-hhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-----hhHhhHHHHHHhhc
Q 000051 1475 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 1546 (2612)
Q Consensus 1475 r~~a~~~L~~ia~~~p-~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~ivp~Ll~~l 1546 (2612)
|.+++.+++.++.++. +.+..+++.++|.+...++|+++.||.+|+++|+++++.+++ +++..++|.|++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999998654 667788999999999999999999999999999999987754 45667777776654
No 18
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.77 E-value=2e-13 Score=199.63 Aligned_cols=752 Identities=14% Similarity=0.124 Sum_probs=447.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhh----C
Q 000051 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGM----G 1651 (2612)
Q Consensus 1577 iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~~----g 1651 (2612)
+...+.......+++.|+.|.+.+..+-.. | + ..+.+..++. +.++.+|..|+..|...+... .
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~ 94 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIP 94 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCC
Confidence 334444434456788999999999887652 1 1 2233333443 567899999999999888642 3
Q ss_pred CCCchhhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-----CChhhHhHHHHHHHHhh
Q 000051 1652 EENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFKYLP 1724 (2612)
Q Consensus 1652 ~~~~~~ll~~L~~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-----~~~~vR~~~~~~l~~L~ 1724 (2612)
++....+-..+++.+... .+..+|...+.+++.++....++.++++++.+.+.+++ +++..++.++.+|..++
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 333344444555555442 24678999999999999887777788999999988765 36668899999999888
Q ss_pred hhh-------------ccchhhhHHhHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCCC
Q 000051 1725 RSL-------------GVQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFND 1787 (2612)
Q Consensus 1725 ~~~-------------g~~f~p~l~~iip~ll~~L~d~~~--~VR~~Al~al~~lv~~~~~~~i--~~llp~L~~~l~d~ 1787 (2612)
... .+.+..+++.+++.+...+.+... .++..+++++...+. .+.... ..++|.+.+.+.
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~-- 251 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ-- 251 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--
Confidence 533 223456677788877777765432 477778777765544 322221 446676666663
Q ss_pred chHHHHHHHHHHHHHHHHhcCCc-ccc-------ccc-------CCCCCCccchHHHHHHHHHH-------h-----Chh
Q 000051 1788 NWRIRQSSVELLGDLLFKVAGTS-GKA-------LLE-------GGSDDEGASTEAHGRAIIEV-------L-----GRD 1840 (2612)
Q Consensus 1788 ~w~vR~~a~~ll~~ll~~~~~~~-~~~-------~~~-------~~~ddd~~~~~~~~~~l~~~-------L-----g~~ 1840 (2612)
+|..|..+++.+..++..-.+.. .+. ... ...++|........+.+... + ..+
T Consensus 252 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 331 (963)
T 2x19_B 252 DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQ 331 (963)
T ss_dssp STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchH
Confidence 67889999999888874210000 000 000 00011111111111111111 1 112
Q ss_pred hHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHhcC-----------hhhHHHHHHHHHHHHHHHhcCCCH-----
Q 000051 1841 KRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANT-----------PKTLKEIMPVLMNTLISSLASSSS----- 1899 (2612)
Q Consensus 1841 ~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~-----------~~~l~~~l~~ll~~L~~~L~~~~~----- 1899 (2612)
.+..++..+..+..+ .+..++..++..|..++... ...+.++++.+++.++..+..++.
T Consensus 332 ~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~ 411 (963)
T 2x19_B 332 SFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411 (963)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 333455555544432 35567889999999987721 134567888888888888753322
Q ss_pred ----------HHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc----CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhH
Q 000051 1900 ----------ERRQVAGRALGELVRKLGERVLPSIIPILSRGL----KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965 (2612)
Q Consensus 1900 ----------~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L----~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ 1965 (2612)
..|..+..++..++...+..+++.+++.+...+ .+.+|..|.+++.+++.+...+.. ...++++.
T Consensus 412 ~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-~~~~~l~~ 490 (963)
T 2x19_B 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-NYSDVVPG 490 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-SCCSHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-hhhHHHHH
Confidence 226677778888888888777888888887777 667899999999999998766543 22356666
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchh
Q 000051 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043 (2612)
Q Consensus 1966 ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~ 2043 (2612)
+++.+. .+.++++.||..++.+++++.+..+ ...+..+++.++..|.+
T Consensus 491 l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~----------------------------- 540 (963)
T 2x19_B 491 LIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN----------------------------- 540 (963)
T ss_dssp HHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC-----------------------------
T ss_pred HHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC-----------------------------
Confidence 666443 3455688899999999998876543 22344445544444422
Q ss_pred hccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC--CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhc
Q 000051 2044 LVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGV 2121 (2612)
Q Consensus 2044 L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~--~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l 2121 (2612)
+.+...++.++..+++.++..+.||++.++..+...+.. -+...+..+.++++.++...+.+
T Consensus 541 ---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~------------- 604 (963)
T 2x19_B 541 ---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE------------- 604 (963)
T ss_dssp ---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH-------------
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH-------------
Confidence 122334566777777766777778888877777776643 23455666666666655443322
Q ss_pred CCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHh----c-CCChhHHH---HHHHHHHHHHhhcCccccccHH
Q 000051 2122 GDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLL----S-DSDSTTVA---AAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2122 ~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll----~-d~d~~V~~---~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+..+|+..+++.+...+ + ..+++.+. ...++++.+.+......-.. +
T Consensus 605 ------------------------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~ 659 (963)
T 2x19_B 605 ------------------------EILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED-D 659 (963)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc-c
Confidence 22333333333333222 1 11333333 34555666655543211000 0
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCC--CCcCchhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQPLLPIFLQGLIS--GSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--~p~~l~~ilp~l~~~L~~--~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
. + .+... +. .-+... .......++|.+...+.. .+.++.+.++.+++.++...+ +.+.||+
T Consensus 660 ~---~----~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~-~~~~~~l 724 (963)
T 2x19_B 660 H---E----GPELR-----KL--PVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL-DDFAPMV 724 (963)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-STTGGGH
T ss_pred c---c----ccccc-----cC--CCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc-ccccccH
Confidence 0 0 00000 00 000000 001234567776665542 467889999999999998888 6788998
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH--hcCCCccCchHHHHHHHHHH----h-cC--CCHHHHHHHHHHHHHH
Q 000051 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR--KGGIALKPFLPQLQTTFIKC----L-QD--STRTVRSSAALALGKL 2340 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~--~~~~~l~p~lpqL~~~~~k~----L-~d--~~~~vR~~Aa~aLg~L 2340 (2612)
+.+..+++....... ....+.+++.++. +.+..+.++++++...++.+ + .+ ..+++|......++.+
T Consensus 725 ~~~~~~l~~~~~~~~----~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~ 800 (963)
T 2x19_B 725 PQLCEMLGRMYSTIP----QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQA 800 (963)
T ss_dssp HHHHHHHHHHHHHSC----CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHH
Confidence 888887776654311 1356777888877 44544667777766655554 2 34 3699999999999998
Q ss_pred Hhcc-------CC-hhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc-----ChHHHHHHHHHHHHhhcCC-CHH
Q 000051 2341 SALS-------TR-VDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV-----SSAVKIRVYSVLKDLVYHD-DDH 2406 (2612)
Q Consensus 2341 ~~~~-------~~-~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~-----~~~~~~~i~~~L~~~l~~~-~~~ 2406 (2612)
+... +. +..+++.++.+++..+..+..++++.|.+++...+..- -..+...++..+...+.+. ...
T Consensus 801 ~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 801 LKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp HHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 6432 33 67788888888888888999999999999987654211 0123344444444444332 222
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 000051 2407 VRVSAASILGIMSQCMEDGQLADLLQEL 2434 (2612)
Q Consensus 2407 vr~~aa~~Lg~L~~~~~~~~~~~~l~~l 2434 (2612)
.....+.+|..+....+ +.+..++...
T Consensus 881 ~~~~~~~il~~l~~~~~-~~~~~~l~~~ 907 (963)
T 2x19_B 881 LMDCFADILFALNKHCF-SLLSMWIKEA 907 (963)
T ss_dssp GHHHHHHHHHHHHHHSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCh-HHHHHHHHHH
Confidence 23445556655554443 2334444433
No 19
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.76 E-value=5.2e-15 Score=216.74 Aligned_cols=752 Identities=11% Similarity=0.083 Sum_probs=421.5
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HH
Q 000051 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DI 1120 (2612)
Q Consensus 1049 ~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~ 1120 (2612)
++..-.+-+++.++|+++++|++..|++|++.|++.... |....+...+. ..+.+..+|.+|. ..
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-----TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhh
Confidence 344445557889999999999999999999999876321 22222333322 2345666776654 35
Q ss_pred HHhcCCCCCCCh-HhHHHhhcCC---------CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000051 1121 WDRYGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2612)
Q Consensus 1121 w~~~~~~~~~~~-~~Ll~~l~~~---------~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 1189 (2612)
|...+.+-...+ ..++..+.+. +..+|++.+++++.++. .||+.|++++..+.+... .
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~------- 149 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------
Confidence 654332222234 5666666532 47899999999999875 589899998888887641 1
Q ss_pred CcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCCCC
Q 000051 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2612)
Q Consensus 1190 ~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~~~ 1269 (2612)
+-..+..+..+|..+++.+.+-.. .+....-|....+ .+. ...+.+++.+...+... .
T Consensus 150 ~~~~~~~~l~~L~~l~eev~~~~~------------~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~-~- 207 (1049)
T 3m1i_C 150 SVNVCENNMIVLKLLSEEVFDFSA------------EQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQG-S- 207 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCT------------TTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHC-C-
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcc------------hhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhc-C-
Confidence 113466777777777654322100 0111111111111 111 12455666666666542 1
Q ss_pred hHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhh-cch-------hHHHHHH
Q 000051 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSR 1341 (2612)
Q Consensus 1270 ~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~-~~~-------~~~li~~ 1341 (2612)
...++..+...++....+.+........+++.+.+.+. .+++++.++.+|+..++... ++. ...+++.
T Consensus 208 ---~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 208 ---SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 13455566666655444443110001224444442221 26889999999998888652 111 1122233
Q ss_pred HHHHhhc---------------C--CChHHHHHHHHHHHHHHhhhC-----cchhhh--hcHHHHHHHHHhCCCCHHHHH
Q 000051 1342 LLDQLMK---------------S--DKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRRE 1397 (2612)
Q Consensus 1342 ll~~L~~---------------~--~~~~~R~~Aa~~L~~l~~~lg-----~~~l~~--~~i~~~L~~~i~~~~~~~~R~ 1397 (2612)
+++.+.. . .+.......+..+..+..... ...... ..+++.+..+...+ +..++.
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~ 362 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFK 362 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHH
Confidence 3333211 1 122233344444444333211 000110 13556666666665 677888
Q ss_pred HHHHHHHHHHHHh------cccchhhHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHH
Q 000051 1398 GALLAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMS 1449 (2612)
Q Consensus 1398 ~Al~al~~L~~~~------~~~~~~~v~~ilp~ll~~l~D~-------------------~---~~VR~aa~~al~~i~~ 1449 (2612)
.++..+..+++.+ ...+.+++..+++.++..+.-+ + ...|+++..++..+..
T Consensus 363 ~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~ 442 (1049)
T 3m1i_C 363 TTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH 442 (1049)
T ss_dssp HHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc
Confidence 8888888887732 2456788899999998876321 0 1346677888888875
Q ss_pred hhcHHhHHhHHHHHHhhhc--CCChhhHHHHHHHHHHHHhhCchhhh-hhhchhHHHHhhhhc-----CCCHHHHHHHHH
Q 000051 1450 QLSAQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQT 1521 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~--~~~w~~r~~a~~~L~~ia~~~p~~l~-~~L~~ivp~L~~~L~-----D~~~~VR~aA~~ 1521 (2612)
..+...+..+++.+-+.+. +.+|+.+.+++.++|.++.+...... ..++.+++.+..+.. |+++.||..+++
T Consensus 443 ~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMY 522 (1049)
T ss_dssp HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 5554455666666666664 46899999999999999877655433 347888888777543 467788878999
Q ss_pred HHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000051 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601 (2612)
Q Consensus 1522 aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~ 1601 (2612)
+++++++.+.+. ...+..+++.+..++.+.++.++..|+.++.
T Consensus 523 ~lgry~~~~~~~-------------------------------------~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 523 VVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-------------------------------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999888654310 1123345555666677777888999999998
Q ss_pred HHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCCHHH
Q 000051 1602 NMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVE 1674 (2612)
Q Consensus 1602 ~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~-~~~~~ll~~L~~~L~~~~~~~~ 1674 (2612)
.++..... +.++.||++.++..+..++.+...+-+....++++.++...++ +....++..++..+.
T Consensus 566 ~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~------- 638 (1049)
T 3m1i_C 566 KIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN------- 638 (1049)
T ss_dssp HHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH-------
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------
Confidence 88875431 1223499999999999999887777788889999999987763 222222222222110
Q ss_pred HHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCC-Chh-hHh--HHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCC
Q 000051 1675 RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VRD--GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750 (2612)
Q Consensus 1675 R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~-~~~-vR~--~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~ 1750 (2612)
+.+..+. .......... ++. ++. ..+.++..++..+|..|.|++..+++.++..+..
T Consensus 639 -----~~~~~~~------------~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~-- 699 (1049)
T 3m1i_C 639 -----MAWDTIV------------EQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA-- 699 (1049)
T ss_dssp -----HHHHHHH------------HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH--
T ss_pred -----HHHHHHH------------HHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--
Confidence 0011111 0000000000 111 121 3356788888999999999988877765432211
Q ss_pred hhHHHHHHHHHHHHHHHhhhc--------hhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCC
Q 000051 1751 ESVRDAALGAGHVLVEHYATT--------SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE 1822 (2612)
Q Consensus 1751 ~~VR~~Al~al~~lv~~~~~~--------~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd 1822 (2612)
. ...+...+...|.. ....+.|.+. .++..+....
T Consensus 700 -----~-~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~---------------~ll~~~~~~~---------------- 742 (1049)
T 3m1i_C 700 -----V-SSMISAQVAAEGLIATKTPKVRGLRTIKKEIL---------------KLVETYISKA---------------- 742 (1049)
T ss_dssp -----H-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHH---------------HHHHHHHHHC----------------
T ss_pred -----H-HHHHHHHHHccCchhhhhHHHHHHHHHHHHHH---------------HHHHHHHHhC----------------
Confidence 0 00011101101110 0011111111 1222222110
Q ss_pred ccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHh----c--
Q 000051 1823 GASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSL----A-- 1895 (2612)
Q Consensus 1823 ~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR-~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L----~-- 1895 (2612)
...+.. .. .+.+.++..+...........| ..++.+++.++...+..+.++++.+++.+..+. .
T Consensus 743 -~~l~~~----~~----~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~ 813 (1049)
T 3m1i_C 743 -RNLDDV----VK----VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD 813 (1049)
T ss_dssp -SCHHHH----HH----HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -CCHHHH----HH----HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 000000 00 0111222222111000000100 346667777777666666777777777766653 2
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhchhh-------hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1896 -SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1896 -~~~~~~R~~A~~aL~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+.++++|......++.++.+....+ +..++.....++..+++.+...++..+.+++...
T Consensus 814 ~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 814 FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 4679999999999999998765543 2344445556777888888888888877776643
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=2.1e-14 Score=195.11 Aligned_cols=633 Identities=12% Similarity=0.085 Sum_probs=401.8
Q ss_pred CChhhHhHHHHHHHHhhhhh-ccchhhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch---hhh-hHHHHh
Q 000051 1708 QRASVRDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS---LPL-LLPAVE 1781 (2612)
Q Consensus 1708 ~~~~vR~~~~~~l~~L~~~~-g~~f~p~l~~iip~ll~~L~d-~~~~VR~~Al~al~~lv~~~~~~~---i~~-llp~L~ 1781 (2612)
.+.+-|+.++.=+..+++-- |.+. -|-..-+..+.+.+.. .++++.-+|++.+..+++...... +.. =.|.+.
T Consensus 20 ~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~ 98 (810)
T 3now_A 20 TPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFM 98 (810)
T ss_dssp CSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHH
Confidence 44556666666666666432 2210 1112234556666666 678899999999988886553321 111 245566
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHcc--CCCHH
Q 000051 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLS 1859 (2612)
Q Consensus 1782 ~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~--D~~~~ 1859 (2612)
+.+..++...-.+++.++..++..++|...+.. .-.| .++++.- ....+.++..|..... -.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 99 RVLDQKHENCVSTAQFCLQTILNALSGLKNKPD----SKPD--------KELCTRN-NREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTT----CCCC--------HHHHHHT-HHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhccccccc----cCCc--------HHHHhhh-hhHHHHHHHHHHHHhhccccChh
Confidence 677778888888888899988888765422110 0011 1121111 1123345555554443 45788
Q ss_pred HHHHHHHHHHHHHhcCh-hhHHHHHHH-HHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHHHhc-----hhhh
Q 000051 1860 VRQAALHVWKTIVANTP-KTLKEIMPV-LMNTLISSLA---SS--------SSERRQVAGRALGELVRKLG-----ERVL 1921 (2612)
Q Consensus 1860 VR~aA~~~l~~l~~~~~-~~l~~~l~~-ll~~L~~~L~---~~--------~~~~R~~A~~aL~~lv~~~~-----~~~l 1921 (2612)
.|..+++.+-..+.... +....++.. -+..++.... +. .++.|..+.-++..+...++ +.+.
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 245 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFT 245 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999877765331 111111110 1122222212 11 45799999999999998887 3344
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHh-HhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh--
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-- 1998 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~-l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~-- 1998 (2612)
..+-..+...+...+.+.+..+++++..++.......-.-+ ....++.+...+..+++.++..|..+++.+......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~ 325 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK 325 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHH
Confidence 55555555666677888888899999988654322211222 257889999999999999999999999886432111
Q ss_pred hhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-----hh-hhH
Q 000051 1999 QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-----LN-FHL 2072 (2612)
Q Consensus 1999 ~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-----l~-~~l 2072 (2612)
...+.-+|.|...+.+++.. ++.+++.+|..++...+.+ +. .-+
T Consensus 326 ~I~~~gv~~L~~Ll~s~~~~------------------------------vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 326 ALCEQGVDILKRLYHSKNDG------------------------------IRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp TTHHHHHHHHHHHTTCSCHH------------------------------HHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHHHcCcHHHHHHHcCCCHH------------------------------HHHHHHHHHHHhccccccCccccchhhccH
Confidence 01122246666555543310 1112233333333221211 11 125
Q ss_pred hhHHHHHHHhcCCC--CHHHHHHHHHHHHHhhhhccc-cc-H--HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc
Q 000051 2073 GTILPALLSAMGDD--DMDVQSLAKEAAETVTLVIDE-EG-V--ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY 2146 (2612)
Q Consensus 2073 ~~il~~Ll~~L~~~--~~~vr~~a~~al~~l~~~~~~-~~-l--~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~ 2146 (2612)
..+++.+.+.|.++ ++++|+.+++++..+....+. .. . ..++|.|+..++++++.++..++.+|+++.......
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 67788888888666 889999999999988653321 11 1 368888999998889999999999999998743100
Q ss_pred -----------hh-------------ccH---------HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHH
Q 000051 2147 -----------LV-------------DEA---------PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYI 2193 (2612)
Q Consensus 2147 -----------~~-------------~~~---------~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv 2193 (2612)
+. ++. ...++.|+.++..+++.++..|..+|..+.... +
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~--~------ 527 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK--E------ 527 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH--H------
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H------
Confidence 00 011 146888999999999999999999999997421 1
Q ss_pred HHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhh--chhh
Q 000051 2194 KVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKE--FVIP 2271 (2612)
Q Consensus 2194 ~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p--~v~~ 2271 (2612)
.++.+.. ...+|.|+..+.++++..|+.|+.+|+.++....+....+ .+..
T Consensus 528 --~r~~Vv~-------------------------~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~ 580 (810)
T 3now_A 528 --LRGKVVQ-------------------------EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580 (810)
T ss_dssp --HHHHHHH-------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHH
T ss_pred --HHHHHHH-------------------------CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhc
Confidence 1222211 1247888888889999999999999999997765433211 1345
Q ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccC-ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCh--
Q 000051 2272 ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKP-FL-PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV-- 2347 (2612)
Q Consensus 2272 i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p-~l-pqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~-- 2347 (2612)
.++||+..+....+...+..++.+|..|+...+. .+. .+ ...++.+...+.++++.+|..|+.++++|+......
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 7899999997432334456788899888753211 111 11 124566777788889999999999999996532111
Q ss_pred ----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHH--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVK--IRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2348 ----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~--~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
...++.|+..+...+..+|..+.+||..+........ .... ...++.|..++.+.+..++..++.+++.++..
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 2357788888888889999999999999986422111 1222 34667888889999999999999999999873
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.73 E-value=1.7e-13 Score=186.16 Aligned_cols=680 Identities=13% Similarity=0.047 Sum_probs=425.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhcChhhHHHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchhh----hhhHHHH
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERV----LPSIIPI 1927 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~-~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~~----l~~llp~ 1927 (2612)
...+.+-|+.|+.-+-.++....+. +.++. .-+..+...+.+ .+++....|.++++.+|..-.... ..-=.|.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~ 96 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGA-ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPW 96 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHH-HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred cccCHHHHHHHHhhceeeeccccch-HHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHH
Confidence 3445667888888777776532221 12221 224455555665 789999999999999997543332 1222355
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChh--------------hHHHhHhHHHHHHHHHhcCC--cHHHHHHHHHHHHH
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKS--------------QLLSFMDELIPTIRTALCDS--ILEVRESAGLAFST 1991 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~~--------------~l~~~l~~ll~~l~~~L~D~--d~~Vr~~A~~al~~ 1991 (2612)
+...+..++.++-.++|..+..++....+. .-...+..++..+..++.|. ....|+++...+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~- 175 (810)
T 3now_A 97 FMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELIT- 175 (810)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHH-
Confidence 666677788888888998888777655321 11235677888888888876 5778888766543
Q ss_pred HHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC-hhh
Q 000051 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG-LNF 2070 (2612)
Q Consensus 1992 l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~-l~~ 2070 (2612)
+++........ ..|.. ...+..+-++.+.-.+.-.+.-+|. +...+...+-++..+-+..+.+ -..
T Consensus 176 --~~~~~~~~~~~-~~~~~--------~~g~~~~l~v~~~~~~~~~~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~ 242 (810)
T 3now_A 176 --RNVHYTALEWA-ERLVE--------IRGLCRLLDVCSELEDYKYESAMDI--TGSSSTIASVCLARIYENMYYDEAKA 242 (810)
T ss_dssp --HHTTCTTTTHH-HHHHH--------TTHHHHHHHHHTCCSSSCCSSCCCC--CTTHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred --HhCCccccccc-cchhh--------HhhHHHHHHHHhcCccccccccCCC--ChhHHHHHHHHHHHHHHHhccchhHH
Confidence 44332211100 01111 1233344444322111111111110 1111122333444444444421 123
Q ss_pred hHhhHHHHHHH-hcCCCCHHHHHHHHHHHHHhhhhccccc-----HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcc
Q 000051 2071 HLGTILPALLS-AMGDDDMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK 2144 (2612)
Q Consensus 2071 ~l~~il~~Ll~-~L~~~~~~vr~~a~~al~~l~~~~~~~~-----l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~ 2144 (2612)
.+...+..++. .+...+.+-.-.+.+++..++....+.+ -...++.++..+.+++..++..|+++++..+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~- 321 (810)
T 3now_A 243 RFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK- 321 (810)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH-
T ss_pred HHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc-
Confidence 33344444443 3456666667778888888876442211 2357788888888999999999999999986542
Q ss_pred cchhcc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCC
Q 000051 2145 LYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCL 2223 (2612)
Q Consensus 2145 ~~~~~~-~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~ 2223 (2612)
+...+ ...-++.|..++.+.+..++..|..+|..+......+. ..+-|.
T Consensus 322 -~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~----------------------------~~~~~~- 371 (810)
T 3now_A 322 -DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDA----------------------------AIRPFG- 371 (810)
T ss_dssp -HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTT----------------------------SCCSST-
T ss_pred -HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCc----------------------------cccchh-
Confidence 11111 11223788888888888888888888877753211000 011111
Q ss_pred CcCchhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhcChhhhhhc-h--hhhhHHHHHHhcCCCCHhHHHHHHHHHHH
Q 000051 2224 PKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEF-V--IPITGPLIRIIGDRFPWQVKSAILSTLSI 2298 (2612)
Q Consensus 2224 p~~l~~ilp~l~~~L~~~--~~~~r~~aa~~L~~li~~~~~~~l~p~-v--~~i~~pLi~~l~~~~~~~vk~~al~~L~~ 2298 (2612)
..++.+++|.|.+.|.++ ++++++.|+.+|+.+.... ..+.. + ..++++|+..+... +..+...++.+|+.
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~---~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~N 447 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA---ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVN 447 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH---HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 123567888999999887 8899999999999997543 23322 2 35678899999864 67899999999999
Q ss_pred HHHhcCCC------------ccC------------chH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Q 000051 2299 IIRKGGIA------------LKP------------FLP---------QLQTTFIKCLQDSTRTVRSSAALALGKLSALST 2345 (2612)
Q Consensus 2299 L~~~~~~~------------l~p------------~lp---------qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~ 2345 (2612)
|....... ... +.. ..++.|+..+..+++.+|..|+.+|+.++....
T Consensus 448 Lt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~ 527 (810)
T 3now_A 448 LCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE 527 (810)
T ss_dssp HTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH
T ss_pred HcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 98743110 001 111 357889999999999999999999999965322
Q ss_pred Chh-----HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCc--ChHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 000051 2346 RVD-----PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSV--SSAVKIRVYSVLKDLVYHD-DDHVRVSAASILGI 2417 (2612)
Q Consensus 2346 ~~~-----~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~--~~~~~~~i~~~L~~~l~~~-~~~vr~~aa~~Lg~ 2417 (2612)
+.+ ..++.|+..+++++...|..+.+||..+........ .......++..|..++.+. +...+..++.+|+.
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 222 247888999988888899999999999876533211 1111234667777887754 44455678889998
Q ss_pred HHhhCChhHHHH-----HHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchh--HHHHHHHHhhhccCChhHHH
Q 000051 2418 MSQCMEDGQLAD-----LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLF--LSILDRLKSSLKDEKFPLRE 2490 (2612)
Q Consensus 2418 L~~~~~~~~~~~-----~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~--~~i~~~l~~~~~~~~~~ir~ 2490 (2612)
|+..-+ +.... .++.+...+.+++..++..+..+++.+.... +.. ..+. ...++.+...+.+++..++.
T Consensus 608 La~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~-~~~--~~~v~~~g~l~~Lv~LL~s~d~~vq~ 683 (810)
T 3now_A 608 LASMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE-DVI--KMFEGNNDRVKFLALLCEDEDEETAT 683 (810)
T ss_dssp HTTSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH-HHH--HHHHSSSSHHHHHHHGGGCSSHHHHH
T ss_pred HhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-HHH--HHHHhccCcHHHHHHHhcCCCHHHHH
Confidence 886532 21111 1222222223445556777888888876532 211 1111 13677888888889999999
Q ss_pred hHHHHHHHHHhhhhccCCCCchhh---HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhH-hHHHHHHHhhh
Q 000051 2491 ASTKALGRLLLHQIQSGPANTTVV---VDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECL 2566 (2612)
Q Consensus 2491 ~a~~alg~ll~~~~~~~~~~~~~l---~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l-~~l~p~l~~~~ 2566 (2612)
.|..|++.+....... ...+ ...+++++..+.+++.++|+.|+.++..++...++...-.. ...+|+|.+.+
T Consensus 684 ~Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 684 ACAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSC
T ss_pred HHHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998742110 0122 24778888889999999999999999999986654432222 45789999998
Q ss_pred cCC---cchhhhhHHHHHHHHhcccccc
Q 000051 2567 KDG---STPVRLAAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2567 ~~~---~~~vk~aae~~~~~~~~~~~~~ 2591 (2612)
+.+ +..|...|.+|+..+++...-+
T Consensus 760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 760 QLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred hCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 754 6779999999999988775543
No 22
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.72 E-value=2.9e-13 Score=192.72 Aligned_cols=746 Identities=11% Similarity=0.110 Sum_probs=410.0
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCC--chHHHHHHHHHHHhcCCCCCCC
Q 000051 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDRYGYDFGTD 1131 (2612)
Q Consensus 1056 ~~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~w~~~~~~~~~~ 1131 (2612)
.+++.+.++.+++| |+..|.+|.+.|++.... |....+...+. ..+. +..++-.|....+..=-.++++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEIF--SEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHHT--TCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35667777767777 689999999999876421 11112222222 1222 5666766654443210023322
Q ss_pred --------h-HhHHHhhc-----CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000051 1132 --------Y-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2612)
Q Consensus 1132 --------~-~~Ll~~l~-----~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 1196 (2612)
+ ..++..+. .....+|.+.+.+++.++. .||+.|+..+..+.+..... +.-..-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 3 44555443 2467899999999999864 68999998888888765321 01001111
Q ss_pred HHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCc-chhhhhHHHHHHHhccCCCChHHhhh
Q 000051 1197 IALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2612)
Q Consensus 1197 ~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~-~~~~~Llp~~~~~l~~~~~~~~~~d~ 1275 (2612)
....+..+.+.+.+.... .+....-|..- ..+.+....- ...+..+.++.++... ..+.
T Consensus 149 ~LriL~~i~EEv~~~~~~-----------~~~~~~~r~~~---lkd~m~~~~~~~i~~~~~~iL~~~~~~------~~~~ 208 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVL-----------KTDVQIQKDNL---VKDAIRANDMSDIVSFVYEMMLAYSNA------KNYG 208 (980)
T ss_dssp HHHHHHHHHHHHCCCCSC-----------CCHHHHHHHHH---HHHHHHHHTHHHHHHHHHHHHHHHHHT------TCHH
T ss_pred HHHHHHHhHHHHHhcccc-----------cCHHHHhhhHH---HHHHHHhccHHHHHHHHHHHHHHHhcc------CCHH
Confidence 222222222322221100 00001112110 1111111110 0122333334443321 1223
Q ss_pred HHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch--hHHHHHHH-----HHHhhc
Q 000051 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRL-----LDQLMK 1348 (2612)
Q Consensus 1276 vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~--~~~li~~l-----l~~L~~ 1348 (2612)
++..+...++....+++...-.-..+++.+...+.+ +++|.++++||..++...... ..+++..+ +..+..
T Consensus 209 l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 209 TVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhc
Confidence 444444444443333221100014677888888876 799999999999888654321 11222221 111111
Q ss_pred -CCChHHHHHHHHHHHHHHhh---h--Cc------------chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000051 1349 -SDKYGERRGAAFGLAGVVKG---F--GI------------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2612)
Q Consensus 1349 -~~~~~~R~~Aa~~L~~l~~~---l--g~------------~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~ 1410 (2612)
.+|.+.+++-++.+..+... . .+ ..+ ..+++.+..+..++ +..+-..++..+..+.+..
T Consensus 287 ~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL~~~~~~-~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 287 QSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLIRYLSDD-YDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHHHHHTCS-SHHHHHTTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHH
Confidence 34444444333333222211 0 11 111 15677777777776 4555554444444444321
Q ss_pred ---------cccchhhHHHHHHHHHHHcCCC------C----------HHHHHHHHHHHHHHHHhhcHHhH-H----hHH
Q 000051 1411 ---------GRLFEPYVIQMLPLLLVAFSDQ------V----------VAVREAAECAARAMMSQLSAQGV-K----LVL 1460 (2612)
Q Consensus 1411 ---------~~~~~~~v~~ilp~ll~~l~D~------~----------~~VR~aa~~al~~i~~~l~~~~v-~----~il 1460 (2612)
...+.+++..+++.++..+.-+ + ...|+... .+..+...+.+..+ . .+.
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~ 442 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT 442 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence 2335678888888888876521 1 13566655 55555555555543 3 333
Q ss_pred HHHHhhhc---CCChhhHHHHHHHHHHHHhhCchhh------hhhhchhHHHHhhhhc-----CCCHHHHHHHHHHHHHH
Q 000051 1461 PSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1461 p~Ll~~L~---~~~w~~r~~a~~~L~~ia~~~p~~l------~~~L~~ivp~L~~~L~-----D~~~~VR~aA~~aL~~l 1526 (2612)
+.+-+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|+.||..+++++++.
T Consensus 443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry 522 (980)
T 3ibv_A 443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY 522 (980)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 43434452 4579999999999999999876522 2567888888888866 89999999999999999
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH--hhcCCCHHHHHHHHHHHHHHh
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSAETKKKAAQIVGNMC 1604 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~--~l~d~s~~vr~~a~~~l~~l~ 1604 (2612)
++.+... | ..++.+++.+.. ++.+++.++|..|+.++.+++
T Consensus 523 s~~~~~~---------------~----------------------~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~ 565 (980)
T 3ibv_A 523 ASFFDYE---------------S----------------------AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFV 565 (980)
T ss_dssp GGGGGTC---------------C----------------------TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHhcC---------------c----------------------hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHH
Confidence 9877421 0 122233444444 666667788999999999999
Q ss_pred hccCCCCcchhhHhhhHHHHHHHhcC---C------------------CHHHHHHHHHHHHHHHhhhCCC------Cchh
Q 000051 1605 SLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGEE------NFPD 1657 (2612)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d---~------------------~~~VR~~A~~aL~~L~~~~g~~------~~~~ 1657 (2612)
+... ..+.||++.++..+..++.- + ..+-+-...+++|.++...+.. ++..
T Consensus 566 ~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ 643 (980)
T 3ibv_A 566 KSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDS 643 (980)
T ss_dssp HHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 8753 46789999999888887762 1 1224667999999999887631 4566
Q ss_pred hHHHHHHHhc----cCCCH-HHH---HHHHHHHHHHHHHhCh---------hhHHhHhHHHHHhcc--CCChhhHhHHHH
Q 000051 1658 LVSWLLDALK----SDNSN-VER---SGAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--HQRASVRDGYLT 1718 (2612)
Q Consensus 1658 ll~~L~~~L~----~~~~~-~~R---~~aa~~L~~i~~~~g~---------~~l~~llp~l~~~~~--~~~~~vR~~~~~ 1718 (2612)
+++.++..+. ..... ..+ .....+++.+.+++.. ..+.+.++.++..+. ..+..+|+.+..
T Consensus 644 ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~ 723 (980)
T 3ibv_A 644 LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRF 723 (980)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 6666554433 22111 111 1344556777777632 234566666666665 457899999999
Q ss_pred HHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHH
Q 000051 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1798 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~l 1798 (2612)
+|..+..++|.++.|+++.++..++..+.-. +. ...+..+..++..|+.+..+. +.. +
T Consensus 724 ~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~--e~-~~fL~l~~qli~~f~~~~~~~-l~~------------------l 781 (980)
T 3ibv_A 724 TSGRIINVVGPDMLPKVPQLISILLNSIDMN--EL-VDVLSFISQLIHIYKDNMMEI-TNR------------------M 781 (980)
T ss_dssp HHHHHTTTTHHHHTTTHHHHHHHHHHHCCTT--TH-HHHHHHHHHHHHHTTTTSHHH-HHH------------------H
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHHhcCCHH--HH-HHHHHHHHHHHHHHHHHHHHH-HHH------------------H
Confidence 9999999999999999999999999654422 11 235677778888887762211 111 1
Q ss_pred HHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC-hh
Q 000051 1799 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-PK 1877 (2612)
Q Consensus 1799 l~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~-~~ 1877 (2612)
+..++.++-.... ....+.| .. ++ ...++++-...+..++.+. +.
T Consensus 782 l~~l~~~if~~l~----~~~~~td-----~~------------r~-------------~~~l~r~~~~fl~~i~~~~~~~ 827 (980)
T 3ibv_A 782 LPTLLMRIFSSLS----AAPQGTD-----DA------------VK-------------QNDLRKSYISFILQLLNKGFGS 827 (980)
T ss_dssp HHHHHHHHHHHTT----C----CC-----HH------------HH-------------HHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHhc----CCCCCcH-----HH------------HH-------------HHHHHHHHHHHHHHHHhCCchh
Confidence 1111111000000 0000000 00 00 1124555556666666532 22
Q ss_pred hH-----HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhchh---------hhhhHHHHHhhhcCCCChhH
Q 000051 1878 TL-----KEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGER---------VLPSIIPILSRGLKDPSASR 1939 (2612)
Q Consensus 1878 ~l-----~~~l~~ll~~L~~~L~~-~~~~~R~~A~~aL~~lv~~~~~~---------~l~~llp~L~~~L~d~~~~v 1939 (2612)
.+ +.+++.++..++.+..+ ++...+..|...+.+++...|+. +.. ++|.......+++-+.
T Consensus 828 v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~ 903 (980)
T 3ibv_A 828 ILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNT 903 (980)
T ss_dssp GGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC-----
T ss_pred hhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCCh
Confidence 22 35677777777765443 67788999999999999876531 345 7777666655554433
No 23
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-13 Score=201.62 Aligned_cols=696 Identities=10% Similarity=0.056 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHH
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWL 1662 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~-d~~~~VR~~A~~aL~~L~~~----~g~~~~~~ll~~L 1662 (2612)
++.+.|+.|.+.+..+-.. +...+.+..++. +.++.+|..|+..|...+.. +.++....+-..+
T Consensus 19 ~d~~~r~~A~~~L~~~~~~-----------p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS-----------PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp STTTC----CHHHHHTTTS-----------THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-----------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 4456777787777765331 122333344443 46789999999999988764 2333333444445
Q ss_pred HHHhccC--CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCC------ChhhHhHHHHHHHHhhhhhc-cc---
Q 000051 1663 LDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ------RASVRDGYLTLFKYLPRSLG-VQ--- 1730 (2612)
Q Consensus 1663 ~~~L~~~--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~------~~~vR~~~~~~l~~L~~~~g-~~--- 1730 (2612)
++.+... .+..+|...+.+++.++....+ .++++++.+.+.+++. ++..++.++..|..++.... ..
T Consensus 88 l~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 88 LESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 5544432 2467899999999999988776 7888999988887654 56678888888888875321 10
Q ss_pred --------hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhh-ccCCCchHHHHHHHHHHHH
Q 000051 1731 --------FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1731 --------f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~-~l~d~~w~vR~~a~~ll~~ 1801 (2612)
+..+++.+++.+...+.+ ... ...+.+|.++..+++.++.
T Consensus 167 ~r~~~~~~l~~~~~~vl~ll~~~l~~-------------------------------~~~~~~~~~~~~~~~~al~~l~~ 215 (971)
T 2x1g_F 167 KRVVLRAEIAKRVQLVIHTVERYLKL-------------------------------QMNRVWDAEAYSNMNRAVKCVGT 215 (971)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHH-------------------------------HTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------------ccCCCCCccchhHHHHHHHHHHH
Confidence 111111111111111100 000 0011135677777777776
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHH---------------HccCCCHHHHHHHHH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM---------------VRSDVSLSVRQAALH 1866 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~---------------~~~D~~~~VR~aA~~ 1866 (2612)
++.. .+.. .+ ....+++.++. +..+.+..+|..|++
T Consensus 216 ~~~~-~~ip-----------~~-----------------~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 266 (971)
T 2x1g_F 216 WIKN-IGYT-----------IE-----------------GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLK 266 (971)
T ss_dssp HHHH-SCCC-----------GG-----------------GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHH
T ss_pred HHhh-CCcC-----------cc-----------------ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHH
Confidence 6542 0000 00 00112222222 011235678999999
Q ss_pred HHHHHHhcCh-----hhHHHHHHHHHHHHHH---HhcCCCH---HHHHHHHHHHHHHHHHh----c----------hhhh
Q 000051 1867 VWKTIVANTP-----KTLKEIMPVLMNTLIS---SLASSSS---ERRQVAGRALGELVRKL----G----------ERVL 1921 (2612)
Q Consensus 1867 ~l~~l~~~~~-----~~l~~~l~~ll~~L~~---~L~~~~~---~~R~~A~~aL~~lv~~~----~----------~~~l 1921 (2612)
++..++...+ ..+..++|.++...-. .+.+.+. +.....++.+..+.... . ...+
T Consensus 267 ~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 346 (971)
T 2x1g_F 267 TMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV 346 (971)
T ss_dssp HHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH
Confidence 9999987432 2233344444332211 2233342 44444555555554321 1 1223
Q ss_pred hhHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHhh-----------ChhhHHHhHhHHHHHHHHHhc---CC-----
Q 000051 1922 PSIIPILSRGLK-----DPSASRRQGVCIGLSEVMASA-----------GKSQLLSFMDELIPTIRTALC---DS----- 1977 (2612)
Q Consensus 1922 ~~llp~L~~~L~-----d~~~~vR~~a~~aL~~li~~~-----------~~~~l~~~l~~ll~~l~~~L~---D~----- 1977 (2612)
..+++.+..... ..+.++...++.....+.... ....+.+++..+++.+...+. |.
T Consensus 347 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~ 426 (971)
T 2x1g_F 347 HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW 426 (971)
T ss_dssp HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS
T ss_pred HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 445555555442 246778888887766654411 113346777888888777663 11
Q ss_pred cH-------HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcc
Q 000051 1978 IL-------EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050 (2612)
Q Consensus 1978 d~-------~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~ 2050 (2612)
++ ..|..+..++..++...|...+..+++.+-..+.+.. .. | .+....
T Consensus 427 d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------~~---~------~~w~~~ 481 (971)
T 2x1g_F 427 SSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----------------RH---P------THWTKL 481 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----------------HC---T------TCCHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CC---C------CcHHHH
Confidence 11 3455566666666555553333333333332221100 00 0 000011
Q ss_pred hhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC--CCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCCCCh
Q 000051 2051 AFNAHALGALAEVAGPGLNFHLGTILPALLSAMG--DDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2051 ~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~--~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
..+..+++++++.......++++.+++ ++..+. +.++.+|..++++++.+..... .+++.++++.++..+ + +
T Consensus 482 eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~ 557 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--S 557 (971)
T ss_dssp HHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--S
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--h
Confidence 124456666666544444578888888 444454 4589999999999999887654 367999999999998 4 8
Q ss_pred hHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcCccc----cccHHHHHHHHH
Q 000051 2127 SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV----QPSYIKVIRDAI 2200 (2612)
Q Consensus 2127 ~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~~a~~aL~~l~~~~~~~~----l~~lv~~l~~~l 2200 (2612)
.++..|+.++..|++..+..+.+|++.++..+..+++. .+...+..+.++++.++...+.+. +..++.++.+.+
T Consensus 558 ~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l 637 (971)
T 2x1g_F 558 SMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEEL 637 (971)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999889999999999999999986 467899999999999998765322 222333333322
Q ss_pred HhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC--CHHHHHH---HHHHHHHHHHhcC------------hh
Q 000051 2201 STSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQ---AALGLGELIEVTS------------EQ 2263 (2612)
Q Consensus 2201 ~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~--~~~~r~~---aa~~L~~li~~~~------------~~ 2263 (2612)
... +.+. +++.+.. +..+|+.++...+ .+
T Consensus 638 ~~~----------------------------------~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~ 683 (971)
T 2x1g_F 638 QAI----------------------------------CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQ 683 (971)
T ss_dssp HHH----------------------------------HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred HHH----------------------------------HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCC
Confidence 211 1111 1222222 3333444444332 23
Q ss_pred hhhhchhhhhHHHHHHhcCC-CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 2264 SLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2264 ~l~p~v~~i~~pLi~~l~~~-~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2612)
.+.++...+.+.+..++... .+.++...++.+++.++...|..+.||+|++.+.++..++.... ..+...++.++.
T Consensus 684 ~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~ 760 (971)
T 2x1g_F 684 PVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIV 760 (971)
T ss_dssp CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHH
Confidence 56777888888777777543 25689999999999999999999999999999999998877432 235566666643
Q ss_pred c-cC------ChhHHHHHHHH----hhhc-------CCHHHHHHHHHHHHHHHHhcCCCcC-hHH-HHHHHHHHHHhhcC
Q 000051 2343 L-ST------RVDPLVGDLLS----SLQV-------SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYH 2402 (2612)
Q Consensus 2343 ~-~~------~~~~~l~~Ll~----~l~~-------~d~~vr~~~l~AL~~vi~~~g~~~~-~~~-~~~i~~~L~~~l~~ 2402 (2612)
. +. .+.+++..+.. .+.. .+++++...+.-+..++.+....+. .+. .+.++......+..
T Consensus 761 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~ 840 (971)
T 2x1g_F 761 MFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTL 840 (971)
T ss_dssp TCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTS
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC
Confidence 2 21 13344443332 2222 2578899998888888887765432 244 67777777777766
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 000051 2403 DDDHVRVSAASILGIMSQC 2421 (2612)
Q Consensus 2403 ~~~~vr~~aa~~Lg~L~~~ 2421 (2612)
++......+...+..+...
T Consensus 841 ~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 841 PESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 6655556676777666544
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=1.3e-14 Score=198.52 Aligned_cols=472 Identities=13% Similarity=0.126 Sum_probs=315.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhH
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~i 1459 (2612)
+..+.+.++++ +...|..+..++..+++..+ ....-+++.+.+.+.|+++.+|..|..++..+ ..+.....+
T Consensus 51 ~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i---~~~~~~~~l 122 (591)
T 2vgl_B 51 FPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI---RVDKITEYL 122 (591)
T ss_dssp HHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC---CSGGGHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC---ChHHHHHHH
Confidence 34455577776 78889888888888776533 23345667778889999999998886666554 345556778
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh----hH
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EI 1535 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i 1535 (2612)
+|.+.+.+.+.++.+|+.|+.+++.+....|+.+.. +.++|.+.++++|+++.|+.+|+.+|+.++..-++. ..
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 888999999999999999999999999877775532 468899999999999999999999999998754322 11
Q ss_pred hhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc-CCCCcc
Q 000051 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDM 1613 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~-~~~~~l 1613 (2612)
...++.|++.+.+.++..+ ..++.+.. +. ..+......+++.+...+++.++.++..|+.++..+...+ .+++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~ 277 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY 277 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence 3456666666665555544 34554432 21 1233455678888888899999999999999999887543 123344
Q ss_pred hhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhh
Q 000051 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2612)
....+.+.+.+..++ ++++++|..|..+++.++...+ +.+...+..++ .+.++. ..+|..+...+..++ ..+.
T Consensus 278 ~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~n 350 (591)
T 2vgl_B 278 NMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQAN 350 (591)
T ss_dssp HHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSST
T ss_pred HHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---Chhh
Confidence 445567777777655 5789999999999999988643 32222222121 222333 667777776555543 2334
Q ss_pred HHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchh
Q 000051 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773 (2612)
Q Consensus 1694 l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i 1773 (2612)
.+.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+..+.++..+..++..++..++.. .
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~ 425 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-Y 425 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-H
Confidence 56788888888888889999999999888887654 344556777778888888888877777766666544321 0
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc
Q 000051 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2612)
Q Consensus 1774 ~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~ 1853 (2612)
...++.+.+.+.
T Consensus 426 ~~~v~~L~~~l~-------------------------------------------------------------------- 437 (591)
T 2vgl_B 426 ESIIATLCENLD-------------------------------------------------------------------- 437 (591)
T ss_dssp CTTHHHHHHTTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 111111111111
Q ss_pred cCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2612)
.+....+|..++-++|.+....+. .+.+++.+.+.+.+.+..+|..+..++..+....++...+.+...+..+..
T Consensus 438 ~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~ 512 (591)
T 2vgl_B 438 SLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQ 512 (591)
T ss_dssp TCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 123445566666666665544332 234445555556666788888888888888766544333334444444444
Q ss_pred C-CChhHHHHHHHHHHH
Q 000051 1934 D-PSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1934 d-~~~~vR~~a~~aL~~ 1949 (2612)
| .++++|+.++..+.-
T Consensus 513 d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 513 DSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp TCCCHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHH
Confidence 4 688999988876543
No 25
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.71 E-value=1.2e-12 Score=186.30 Aligned_cols=784 Identities=11% Similarity=0.081 Sum_probs=430.3
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------
Q 000051 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2612)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2612)
+.++.+.++-+.++++++.+.+|++..|.+|++.|++.... |....+...+. ..+.+..+|-+|.
T Consensus 6 ~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp GGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Confidence 34555566778899999999999999999999999876421 21222222222 2234556666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHhhcC----C-----CHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000051 1119 DIWDRYGYDFGTDY-SGLFKALSH----S-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2612)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~~----~-----~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2612)
..|...+.+-...+ ..+++.+.+ + ...+|++.+++++.++. .||+.|+..+..+.+... .
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~----- 149 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S----- 149 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----T-----
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----C-----
Confidence 46765432222224 455554432 2 46889999999999864 689999999888887631 1
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCC
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~ 1267 (2612)
+-..+......|..+++.+.+ + .-.+-...-|....+++.. ..+.+++.+..++....
T Consensus 150 --~~~~~~~~L~iL~~L~EEV~~--------~----~~~~l~~~r~~~lk~~l~~--------~~~~I~~ll~~iL~~~~ 207 (1023)
T 4hat_C 150 --SVNVCENNMIVLKLLSEEVFD--------F----SAEQMTQAKALHLKNSMSK--------EFEQIFKLCFQVLEQGA 207 (1023)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHT--------S----CTTTSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCS
T ss_pred --CHHHHHHHHHHHHHHHHHHHH--------h----hhccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC
Confidence 112344455555555443211 0 0001111122222222221 24556666666665421
Q ss_pred CChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHH-HhcCCCCHHHHHHHHhhhHHhHhhh--cc--hhH----HH
Q 000051 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD--EAP----TL 1338 (2612)
Q Consensus 1268 ~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~-~~L~~~~~~Vq~~~~~~L~~lv~~~--~~--~~~----~l 1338 (2612)
...+...+...++....+++-..-.-..+++.++ ..+. +++.|.++++|+..++... ++ ... .+
T Consensus 208 -----~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 208 -----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp -----SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 1233344555555554444321000123666666 6664 5689999999999988632 22 122 22
Q ss_pred HHHHHHHh---------------hcCC--ChHHHHHHHHHHHHHHhhhCcchh--hh-hcHHH----HHHHHHhCCCCHH
Q 000051 1339 VSRLLDQL---------------MKSD--KYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2612)
Q Consensus 1339 i~~ll~~L---------------~~~~--~~~~R~~Aa~~L~~l~~~lg~~~l--~~-~~i~~----~L~~~i~~~~~~~ 1394 (2612)
++..++.+ ..++ |.....+-+..+..+......-.. .. .+++. .|..+...+ +..
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 33333322 1111 122222333333333332211000 00 12322 444443444 555
Q ss_pred HHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHcCCCC-------------------HH--HH-HHHHHHHHH
Q 000051 1395 RREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV-------------------VA--VR-EAAECAARA 1446 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~~------~~~~~~v~~ilp~ll~~l~D~~-------------------~~--VR-~aa~~al~~ 1446 (2612)
.-..++.....+++.+- ..+.|++.++++.++..+.-+. .+ .. +...+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 54445554455555332 3478889999999998875332 00 00 111255555
Q ss_pred HHHhhcHHhHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhc-----CCCHHHHHH
Q 000051 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2612)
Q Consensus 1447 i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~-----D~~~~VR~a 1518 (2612)
+..-.+++.++.+++.+.+.+.+ .+|+.+.+++.++|+++.+... ....+++.++|.|+.++. |.++.||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 54444555556677777666654 6899999999999999987554 467889999999999886 467788889
Q ss_pred HHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000051 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2612)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~ 1598 (2612)
+++++|+..+.+... ...+..++..+.+++.+.++++...||.
T Consensus 520 ~~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp HHHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 999999888765310 1123334555566666666788888888
Q ss_pred HHHHHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-chhhHHHHHHHhccCCC
Q 000051 1599 IVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1599 ~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~~~ll~~L~~~L~~~~~ 1671 (2612)
++..+|..+.. +.+..||++.++..+.....+-.+.-+..+..++|.++...+.+. ...++..|+..+.
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~---- 638 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN---- 638 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHH----
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHH----
Confidence 88888875432 234468999999999998888788899999999999999887542 2333333332211
Q ss_pred HHHHHHHHHHHHHHHH--HhChhhHH--hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcC
Q 000051 1672 NVERSGAAQGLSEVLA--ALGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~--~~g~~~l~--~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~ 1747 (2612)
+.+..+.. .-+...+. +-...+ -..+.++..++..+|..|.||+..+.+.+++..+
T Consensus 639 --------~~~~~l~~~~~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 639 --------MAWDTIVEQSTANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp --------HHHHHHHHHHHHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 01111111 01111110 001111 1235577788899999999999999998876532
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchH
Q 000051 1748 DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2612)
Q Consensus 1748 d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~ 1827 (2612)
-.... +...+..-|....+. | ..+++ -.+|.+.++++...+.... + .+
T Consensus 699 ~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~-------------~----~~ 746 (1023)
T 4hat_C 699 AVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKAR-------------N----LD 746 (1023)
T ss_dssp HHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCS-------------C----HH
T ss_pred HHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCC-------------C----HH
Confidence 11111 111111112111000 0 00000 0155666666666654321 0 01
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCH
Q 000051 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSS 1899 (2612)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vl~~L~~~~~D-----~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~ 1899 (2612)
. +... ..+.++..+...-.. ....|-.....++..+.......+..++..++..-+.+++ +.++
T Consensus 747 ~----~~~~----~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 747 D----VVKV----LVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp H----HHHH----THHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred H----HHHH----hHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 1 1111 111222222211111 1234444444444444333333344444555544555665 3689
Q ss_pred HHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh--------hhHHHhHh
Q 000051 1900 ERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--------SQLLSFMD 1964 (2612)
Q Consensus 1900 ~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~--------~~l~~~l~ 1964 (2612)
+.|..-.+.+..+...+... ....++..+.-+++.+.+++-..++..+.+++.+... .-+..|+.
T Consensus 819 e~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFF 898 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999988876443 3345666666678888888888888877777765432 11234445
Q ss_pred HHHHHHHHHhcCC
Q 000051 1965 ELIPTIRTALCDS 1977 (2612)
Q Consensus 1965 ~ll~~l~~~L~D~ 1977 (2612)
.++..+...+.|.
T Consensus 899 ~~~~~~~~v~td~ 911 (1023)
T 4hat_C 899 IFVSETFFVLTDS 911 (1023)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCc
Confidence 5555555555554
No 26
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=5.7e-14 Score=192.06 Aligned_cols=464 Identities=13% Similarity=0.140 Sum_probs=321.0
Q ss_pred HHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhh
Q 000051 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSR 1930 (2612)
Q Consensus 1851 ~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~ 1930 (2612)
....+.+..+|+.+.-.+..++...++. ...+++.+.+.+.++++.+|..|.++++.+. .+.+.+.+.|.+.+
T Consensus 56 ~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~ 128 (591)
T 2vgl_B 56 NCMQTDNLELKKLVYLYLMNYAKSQPDM----AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRK 128 (591)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHSHHH----HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccCchH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 3467888999999999988887755432 3334566777789999999999999888764 55577888999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh----hhhhhHH
Q 000051 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ----AIDEIVP 2006 (2612)
Q Consensus 1931 ~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~----~~~~ilp 2006 (2612)
++.|+++.+|..|+.+++.+... +++.+.. ..+++.+...+.|+++.|+.+|..+++.+....+.. .....++
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDI-NAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHS-SCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhh-Chhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 99999999999999999998763 3433321 468899999999999999999999999886543211 1123355
Q ss_pred HHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCC
Q 000051 2007 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDD 2086 (2612)
Q Consensus 2007 ~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~ 2086 (2612)
.++..+.+.+.+. ....+..++.. ++.-.+....+++.+...+.+.
T Consensus 206 ~Ll~~l~~~~~~~---------------------------------q~~il~~l~~l-~~~~~~~~~~~l~~l~~~l~~~ 251 (591)
T 2vgl_B 206 KLLTALNECTEWG---------------------------------QIFILDCLSNY-NPKDDREAQSICERVTPRLSHA 251 (591)
T ss_dssp HHHHHHHHCCHHH---------------------------------HHHHHHHHHTS-CCCSHHHHHHHHHHHTTCSCSS
T ss_pred HHHHcCCCCCchH---------------------------------HHHHHHHHHHh-CCCChHHHHHHHHHHHHHHcCC
Confidence 5555543322110 11222222221 1111234567788888888888
Q ss_pred CHHHHHHHHHHHHHhhhhc--ccccHH----HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Q 000051 2087 DMDVQSLAKEAAETVTLVI--DEEGVE----SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV 2160 (2612)
Q Consensus 2087 ~~~vr~~a~~al~~l~~~~--~~~~l~----~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ 2160 (2612)
++.|+..+++++..+...+ +++.+. .+.+.|...+ ++++.+|..++.+++.+....+..+.++...+ +
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~- 325 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F- 325 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-
T ss_pred ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-
Confidence 9999999999988876543 234444 3444455443 57899999999999999887665555544322 2
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhc
Q 000051 2161 LLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS 2240 (2612)
Q Consensus 2161 ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~ 2240 (2612)
+..+++..||..+.+.+..++.. ..+..+++.+.+.+.+
T Consensus 326 ~~~~d~~~Ir~~al~~L~~l~~~-----------------------------------------~nv~~iv~~L~~~l~~ 364 (591)
T 2vgl_B 326 VKYNDPIYVKLEKLDIMIRLASQ-----------------------------------------ANIAQVLAELKEYATE 364 (591)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCS-----------------------------------------STHHHHHHHHHHHTTS
T ss_pred eccCChHHHHHHHHHHHHHHCCh-----------------------------------------hhHHHHHHHHHHHHhc
Confidence 22233488888888777665421 2233455555666667
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 2320 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k 2320 (2612)
.+.+.|..++.+|+.++.+.+ +....++..|+..+.+. .+.++..++.++..++++.+.... .....+.+
T Consensus 365 ~d~~~r~~~v~aI~~la~~~~-----~~~~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~~~----~~v~~L~~ 434 (591)
T 2vgl_B 365 VDVDFVRKAVRAIGRCAIKVE-----QSAERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNKYE----SIIATLCE 434 (591)
T ss_dssp SCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSSCC----TTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCh-----hHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcchHH----HHHHHHHH
Confidence 788999999999999997653 23344556678888876 667778888899999988775432 23444556
Q ss_pred HhcC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHh
Q 000051 2321 CLQD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 2399 (2612)
Q Consensus 2321 ~L~d-~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~ 2399 (2612)
.+.+ .++.+|..+++++|.+...-+....++..+++.+...+..+|..++.|+..+....+... . +.+..++...
T Consensus 435 ~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~---~~i~~ll~~~ 510 (591)
T 2vgl_B 435 NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-Q---ELVQQVLSLA 510 (591)
T ss_dssp TTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-H---HHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-H---HHHHHHHHHh
Confidence 7765 478999999999999865545566777777777766678999999999999987765432 2 3333344444
Q ss_pred hcC-CCHHHHHHHHHHHHHHH
Q 000051 2400 VYH-DDDHVRVSAASILGIMS 2419 (2612)
Q Consensus 2400 l~~-~~~~vr~~aa~~Lg~L~ 2419 (2612)
..+ .+.++|..|.+.++-+.
T Consensus 511 ~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 511 TQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HTTCCCHHHHHHHHHHHTTTT
T ss_pred hhcCCChHHHHHHHHHHHHHC
Confidence 344 67899998888776554
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.64 E-value=2.4e-11 Score=177.99 Aligned_cols=696 Identities=11% Similarity=0.079 Sum_probs=411.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh----CCCCchhhHHHH
Q 000051 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM----GEENFPDLVSWL 1662 (2612)
Q Consensus 1587 d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~----g~~~~~~ll~~L 1662 (2612)
+++...|+.|.+.+..+-.. + +.-.+ +...+. .+.++.+|..|+..|...+..- +++....+-..+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~---p-~~~~~---l~~iL~---~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~l 96 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN---P-DAWQK---ADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS---T-TGGGG---HHHHHH---HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC---c-hHHHH---HHHHHh---hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 34456899999999887552 1 22222 222222 2568999999999999887642 222223344444
Q ss_pred HHHhccCC--------CHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc------
Q 000051 1663 LDALKSDN--------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG------ 1728 (2612)
Q Consensus 1663 ~~~L~~~~--------~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g------ 1728 (2612)
+..+.+.. ...+|...+++++.++....++.++++++.+++.++ .++..++.++.++..++....
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~ 175 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQ 175 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchh
Confidence 44443321 245788889999999988777888999999999886 566678888999988886543
Q ss_pred ----------cchhhhHHhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHHhhhch--hhhhHHHHhhccCCCchHHHHHH
Q 000051 1729 ----------VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTS--LPLLLPAVEDGIFNDNWRIRQSS 1795 (2612)
Q Consensus 1729 ----------~~f~p~l~~iip~ll~~L~d-~~~~VR~~Al~al~~lv~~~~~~~--i~~llp~L~~~l~d~~w~vR~~a 1795 (2612)
..|..+++.+++.+...+.+ .+..++..+++++..++...+... .+.+++.+.+.+. .+..+|..+
T Consensus 176 ~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a 254 (1049)
T 3m1i_C 176 MTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAIT 254 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHH
Confidence 23556677777777777654 346788888888876654322111 0123333321111 134566667
Q ss_pred HHHHHHHHHHhcCCc-----cc---------------c---------cccCCCCCCccchHHHHHHHH-------HHhC-
Q 000051 1796 VELLGDLLFKVAGTS-----GK---------------A---------LLEGGSDDEGASTEAHGRAII-------EVLG- 1838 (2612)
Q Consensus 1796 ~~ll~~ll~~~~~~~-----~~---------------~---------~~~~~~ddd~~~~~~~~~~l~-------~~Lg- 1838 (2612)
++.+..++..-.+.. .+ . .....+++|.+-.....+.+. +.+.
T Consensus 255 ~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~ 334 (1049)
T 3m1i_C 255 LKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLES 334 (1049)
T ss_dssp HHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 776666553200000 00 0 000011111110111111111 1110
Q ss_pred ----hhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh------cChhhHHHHHHHHHHHHHHHhcCC-----------
Q 000051 1839 ----RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA------NTPKTLKEIMPVLMNTLISSLASS----------- 1897 (2612)
Q Consensus 1839 ----~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~------~~~~~l~~~l~~ll~~L~~~L~~~----------- 1897 (2612)
.+....++..+..+....+..++..+++.|..++. .....+.++++.+++.++..+.-+
T Consensus 335 ~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~ 414 (1049)
T 3m1i_C 335 DESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEG 414 (1049)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTS
T ss_pred ChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCC
Confidence 11233455555555455588999999999999987 223456788999999988877421
Q ss_pred --------C---HHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhChhhHHHhHh
Q 000051 1898 --------S---SERRQVAGRALGELVRKLGERVLPSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2612)
Q Consensus 1898 --------~---~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~ 1964 (2612)
+ +..|..+..+|..++...+..+++.+.+.+.+.+. ..+|..|.+++.++|.+...+.+..-..+++
T Consensus 415 e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 415 EIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred cchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 1 13466778888888877777788888888887775 3689999999999998766555443345678
Q ss_pred HHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccc
Q 000051 1965 ELIPTIRTALC-----DSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037 (2612)
Q Consensus 1965 ~ll~~l~~~L~-----D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vl 2037 (2612)
.+++.+..... |+.+.++..++.+++++.+.+. +..+..+++.+++.|.++.
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~--------------------- 553 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH--------------------- 553 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC---------------------
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---------------------
Confidence 88887776432 3566777778888887765433 2344555555555554322
Q ss_pred cccchhhccCCcchhHHHHHHHHHHHhCCChh--------hhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-c
Q 000051 2038 PHILPKLVHLPLSAFNAHALGALAEVAGPGLN--------FHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E 2108 (2612)
Q Consensus 2038 p~Lip~L~~~~~~~~~~~al~~La~~~g~~l~--------~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~ 2108 (2612)
+++...++.++..+++.++..+. ||++.++..+...+..-+.+......++++.++...+. +
T Consensus 554 ---------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~ 624 (1049)
T 3m1i_C 554 ---------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1049)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 12233466777777776665554 99999999998888776666677788899998876652 2
Q ss_pred ----cHHHHHHHHHhhcC--------C----CChh-HHH--HHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhH
Q 000051 2109 ----GVESLVSELLKGVG--------D----NQAS-IRR--SSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTT 2169 (2612)
Q Consensus 2109 ----~l~~ll~~Ll~~l~--------~----~~~~-vR~--~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V 2169 (2612)
.+..+++.+...+. + .++. .+. ..+.++..++...+..+.++...++..++..+...
T Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~---- 700 (1049)
T 3m1i_C 625 ERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAV---- 700 (1049)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 23444443332211 1 0222 122 33556677777778888888877776665444211
Q ss_pred HHHHHHHHHHHHhhcCc--------cccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC
Q 000051 2170 VAAAWEALSRVVASVPK--------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG 2241 (2612)
Q Consensus 2170 ~~~a~~aL~~l~~~~~~--------~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~ 2241 (2612)
...+.......+. ..+..+.+.+.+.+....... . .+ +......+.+++..++....+.
T Consensus 701 ----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~-----~---~l-~~~~~~~~~~~l~~ll~~~~~~ 767 (1049)
T 3m1i_C 701 ----SSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA-----R---NL-DDVVKVLVEPLLNAVLEDYMNN 767 (1049)
T ss_dssp ----HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC-----S---CH-HHHHHHTHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC-----C---CH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 1111111110010 112223333333333221110 0 00 0000011222333333333222
Q ss_pred CHHHH-HHHHHHHHHHHHhcChhhhhhchhhhhHHHHHH----hcC--CCCHhHHHHHHHHHHHHHHhcCCCccCc----
Q 000051 2242 SAELR-EQAALGLGELIEVTSEQSLKEFVIPITGPLIRI----IGD--RFPWQVKSAILSTLSIIIRKGGIALKPF---- 2310 (2612)
Q Consensus 2242 ~~~~r-~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~----l~~--~~~~~vk~~al~~L~~L~~~~~~~l~p~---- 2310 (2612)
.+..| ..+..+++.++...| +.+.||+..+...+... +.+ ...++++...+..++.++.+++..+.+.
T Consensus 768 ~~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~ 846 (1049)
T 3m1i_C 768 VPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1049)
T ss_dssp CGGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHH
T ss_pred CcccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHH
Confidence 22211 347888999999888 67888888877665554 332 2468899999999999999887765431
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 2311 LPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 2342 (2612)
Q Consensus 2311 lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~ 2342 (2612)
+..+....+.++..+++.+...+...+-.++.
T Consensus 847 ~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~ 878 (1049)
T 3m1i_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVK 878 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Confidence 34456667778988899999999988888754
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.63 E-value=1.1e-13 Score=194.80 Aligned_cols=540 Identities=12% Similarity=0.068 Sum_probs=328.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHH
Q 000051 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1966 (2612)
Q Consensus 1887 l~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~l 1966 (2612)
++.++..|.+++...|..+.+.+...-+ ..+....+|.|...+.++++.+|..++.+|+.+.............+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5567777888888888888877764321 1233566777777788889999999999999886532211111112467
Q ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCh-h--hhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccch
Q 000051 1967 IPTIRTALCD-SILEVRESAGLAFSTLFKSAGM-Q--AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2612)
Q Consensus 1967 l~~l~~~L~D-~d~~Vr~~A~~al~~l~~~~g~-~--~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip 2042 (2612)
++.+...+.+ .++++|..|+.++..+...... . .-...+|.|++.|++++..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~------------------------ 249 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDS------------------------ 249 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHH------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHH------------------------
Confidence 8888888864 4899999999999887532111 0 1123566666666554311
Q ss_pred hhccCCcchhHHHHHHHHHHHhCCChhhhH-hhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccc----cHHHHHHHH
Q 000051 2043 KLVHLPLSAFNAHALGALAEVAGPGLNFHL-GTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE----GVESLVSEL 2117 (2612)
Q Consensus 2043 ~L~~~~~~~~~~~al~~La~~~g~~l~~~l-~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~----~l~~ll~~L 2117 (2612)
+...++.+|..|+......-.... ..+++.|++.+.+++..++..+..++..+.....+. .-...++.|
T Consensus 250 ------v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L 323 (780)
T 2z6g_A 250 ------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323 (780)
T ss_dssp ------HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred ------HHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 111234455555543222111121 468899999998888899998888887665421110 001235566
Q ss_pred HhhcCCCCh-hHHHHHHHHHHHHHHhcccchhcc-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCccccccHHHH
Q 000051 2118 LKGVGDNQA-SIRRSSAYLIGYFYKNSKLYLVDE-APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKV 2195 (2612)
Q Consensus 2118 l~~l~~~~~-~vR~~A~~~L~~l~~~~~~~~~~~-~~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~ 2195 (2612)
+..+++.+. ..+..++.++..++.... ..... -...++.|+.++.+.+..++..+..+|..++....+.
T Consensus 324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------- 394 (780)
T 2z6g_A 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------- 394 (780)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTSTT-HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--------
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcChH-HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--------
Confidence 666666554 445577888888875321 11111 1245788888999989999999988888887543210
Q ss_pred HHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch-hhhhH
Q 000051 2196 IRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV-IPITG 2274 (2612)
Q Consensus 2196 l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v-~~i~~ 2274 (2612)
.+...++|.+++.+.+.++++|..|+.+|+.++.... ......+ ...++
T Consensus 395 -----------------------------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~-~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 395 -----------------------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIE 444 (780)
T ss_dssp -----------------------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHTTTHHH
T ss_pred -----------------------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHH
Confidence 1234578888888888999999999999999976432 2222111 34567
Q ss_pred HHHHHhcCCC-CHhHHHHHHHHHHHHHHhcCCC--ccCc--hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCCh-
Q 000051 2275 PLIRIIGDRF-PWQVKSAILSTLSIIIRKGGIA--LKPF--LPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTRV- 2347 (2612)
Q Consensus 2275 pLi~~l~~~~-~~~vk~~al~~L~~L~~~~~~~--l~p~--lpqL~~~~~k~L~d~~-~~vR~~Aa~aLg~L~~~~~~~- 2347 (2612)
+|++.+.+.. ..+++..++.+|+.|....+.. .+.. ....++.+++.|.+++ +.+|..|+.+|+++.......
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~ 524 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 524 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888887532 3489999999999885422210 0000 0123567788888875 599999999999996421111
Q ss_pred ----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhC
Q 000051 2348 ----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCM 2422 (2612)
Q Consensus 2348 ----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~ 2422 (2612)
...++.|+..+.+.+..+|..+.+++.. . .... ...+.++..++.+|+.|+..
T Consensus 525 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n--q-------------------~~~~~~~~~~v~~~a~~aL~~La~~- 582 (780)
T 2z6g_A 525 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--Q-------------------QFVEGVRMEEIVEACTGALHILARD- 582 (780)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHTTC---------------------------CCSTTCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHCCCHHHHHHHHHhcchhHHHHHhhcccc--c-------------------hhhcccChHHHHHHHHHHHHHHhcC-
Confidence 1245666666655444444433333221 0 0111 12356788888888888631
Q ss_pred ChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000051 2423 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2423 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2612)
. .. +. .+.. .+ +++.++..+.+.++.++.+|+.+++.+...
T Consensus 583 -~-~~------------------~~--------~l~~-------~~----~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 583 -I-HN------------------RI--------VIRG-------LN----TIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp -H-HH------------------HH--------HHHH-------TC----CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred -h-hh------------------HH--------HHHH-------CC----cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 1 00 00 0000 01 244556667778889999999999988643
Q ss_pred hhccCCCCchhhHH--HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH-HHHHHHh
Q 000051 2503 QIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL-FGPALAE 2564 (2612)
Q Consensus 2503 ~~~~~~~~~~~l~~--~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~-l~p~l~~ 2564 (2612)
.. ....+.+ .++.++..+.+++.+||+.|+.+|..+++.+|..++..+.. +++.+|.
T Consensus 624 ~~-----~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~ 683 (780)
T 2z6g_A 624 KE-----AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683 (780)
T ss_dssp HH-----HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC--
T ss_pred HH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHh
Confidence 21 1122222 57778888899999999999999999999999877665532 4555553
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.63 E-value=1.1e-13 Score=184.27 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=267.8
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHH
Q 000051 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580 (2612)
Q Consensus 1501 vp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~ 1580 (2612)
+|.+++.++++++.+|..|+.+|..+...-.++.+..++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 777888898999999999999999876532222211100 0 0025666
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhccCCCCcchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--C--
Q 000051 1581 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--N-- 1654 (2612)
Q Consensus 1581 L~~~l~d~-s~~vr~~a~~~l~~l~~~~~~~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--~-- 1654 (2612)
+.+.+.+. ++.+|..++.++++++.. .++....+ -..++|.+.+++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67777766 788999999999998862 21111111 2468999999999999999999999999998743211 1
Q ss_pred chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC----hhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1655 ~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g----~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
-...+|.++..+.++.+..+|..++.+++.++...+ .......+|.+++.+.+.++.+|..++.++..++....+.
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 135788888888865667789999999999885432 2234678899999999999999999999999987643221
Q ss_pred hhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000051 1731 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2612)
Q Consensus 1731 f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~ 1809 (2612)
..... ..++|.++..+.++++.+|..++.++..+....+
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------------------------------------- 266 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD---------------------------------------- 266 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh----------------------------------------
Confidence 11111 1245555555555555555555444443321100
Q ss_pred cccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHH-HHHHH
Q 000051 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1888 (2612)
Q Consensus 1810 ~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~ 1888 (2612)
...+.+. . ..+++.+...+.+.+..+|..|+.+++.++.+.+.....++ ..+++
T Consensus 267 ------------------~~~~~~~---~----~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 267 ------------------IQTQVIL---N----CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp ------------------HHHHHHH---T----TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred ------------------HHHHHHH---H----CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000010 0 02445555566777889999999999999876665555444 36778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhchh-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-----
Q 000051 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1958 (2612)
Q Consensus 1889 ~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~----- 1958 (2612)
.++..+.+.++.+|..|+.+|+.++....+. ....++|.|...+.++++++|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 8888888899999999999999998763322 124588889999999999999999999999876433211
Q ss_pred -HHHhHhHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1959 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1959 -l~~~l~~l-----l~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
..+|...+ ++.+...+.+++.++++.|..++..+.
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12344444 566777777788899998888777664
No 30
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.61 E-value=3.7e-11 Score=169.47 Aligned_cols=759 Identities=9% Similarity=0.069 Sum_probs=405.4
Q ss_pred HHHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------
Q 000051 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE-------- 1118 (2612)
Q Consensus 1047 ~~~~~~~~~~~~~~~ll~~~~s~~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------- 1118 (2612)
+.++.+.++-+.+++++..+.+|++..|.+|++.|.+.... |........+ -..+.+..++-+|.
T Consensus 18 ~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~ 90 (1073)
T 3gjx_A 18 LLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIK 90 (1073)
T ss_dssp CCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred hhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHH
Confidence 34455556667899999999999999999999999886421 2222222222 12344566666553
Q ss_pred HHHHhcCCCCCCCh-HhHHHhhc---------CCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCC
Q 000051 1119 DIWDRYGYDFGTDY-SGLFKALS---------HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNV 1187 (2612)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~Ll~~l~---------~~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 1187 (2612)
..|...+.+-...+ ..++..+. ..+..++.+.+++++.++. .||+.|+..+..+.+....
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~--------- 161 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT--------- 161 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---------
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---------
Confidence 45764332222224 45555442 2367899999999999875 5899998888888876431
Q ss_pred CCCcchhhHHHHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccCC
Q 000051 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~~ 1267 (2612)
+-..+......|..+++.+.+-.. .-+. ..-|....+++. ..++.+++++..++...
T Consensus 162 --~~~~~~~~L~IL~~L~EEV~d~~~---------~~l~---~~r~~~lk~~L~--------~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 162 --SESLCQNNMVILKLLSEEVFDFSS---------GQIT---QVKAKHLKDSMC--------NEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTSHH---------HHBC---HHHHHHHHHHHH--------HTCHHHHHHHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHhccc---------cccc---HHHHHHHHHHHH--------HHHHHHHHHHHHHhccc-
Confidence 113455566666666554321100 0010 111112222221 12566777777777642
Q ss_pred CChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHH-HHhcCCCCHHHHHHHHhhhHHhHhhhcchhHHHHHHHHHH-
Q 000051 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQ- 1345 (2612)
Q Consensus 1268 ~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L-~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~~~li~~ll~~- 1345 (2612)
. ...+...+...++....+++-+.-.-..+++.+ ...|. ++++|.++++||..++....+...+.+..+++.
T Consensus 219 ~----~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 Q----NAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT 292 (1073)
T ss_dssp C----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 123344555666666666542211112356666 46664 568999999999988865322222333333322
Q ss_pred ---h---h-cCCChHH--------HHHHHHHHHHHHhhhCcchh---------hh--hcHHHHHHHHHhCCCCHHHHHHH
Q 000051 1346 ---L---M-KSDKYGE--------RRGAAFGLAGVVKGFGISSL---------KK--YGIAATLREGLADRNSAKRREGA 1399 (2612)
Q Consensus 1346 ---L---~-~~~~~~~--------R~~Aa~~L~~l~~~lg~~~l---------~~--~~i~~~L~~~i~~~~~~~~R~~A 1399 (2612)
+ . ...+... -..-..+++.+....|.... .. ...+..+..+...+ +...-...
T Consensus 293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 1 1 1101100 01223334444433322111 00 01233344444444 44444444
Q ss_pred HHHHHHHHHHhc-------------------------ccchhhHHHHHHHHHHHcCCCCH--------------------
Q 000051 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQVV-------------------- 1434 (2612)
Q Consensus 1400 l~al~~L~~~~~-------------------------~~~~~~v~~ilp~ll~~l~D~~~-------------------- 1434 (2612)
+.....+.+.+- ..+.|++.++...++..+.-|+.
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 443333443221 12566677777777776653211
Q ss_pred --HHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcC--CChhhHHHHHHHHHHHHhhCch-hhhhhhchhHHHHhhhhc
Q 000051 1435 --AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT 1509 (2612)
Q Consensus 1435 --~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~--~~w~~r~~a~~~L~~ia~~~p~-~l~~~L~~ivp~L~~~L~ 1509 (2612)
.+++..-+++..+..-.+.+....+++.+-+.+.. .+|....+.|.++|+|+.+... .-...++.+++.|+.+..
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 12333344443332222233445566666555543 4699999999999999876553 455789999999998886
Q ss_pred CC-----CHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1510 DT-----HPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1510 D~-----~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
.+ .+.|+...+..+|+..+.+.+ + .++.++ ..+.
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl---------------------------------------~~L~ 572 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVV---------------------------------------NKLF 572 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHH---------------------------------------HHHH
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHH---------------------------------------HHHH
Confidence 54 345677777888888776542 1 223333 3344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCC------CCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCC-c
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~------~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~-~ 1655 (2612)
+.+.+.++.++.+|+.++..+|..+.. +.+..||++.++..+.....+=.++-...-..++|.++...|.+. .
T Consensus 573 ~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 573 EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchH
Confidence 445555567777888888887765432 123568999999988888887778888899999999999887642 2
Q ss_pred hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hChhhHH--hHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccch
Q 000051 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1656 ~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~--~g~~~l~--~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f 1731 (2612)
+.++..++.... +.+..+... -+.+.+. ..+..+ -..+.+...++..+|..|
T Consensus 653 ~~~i~~Lm~~~~------------~~w~~l~~~~~~~~~~~~d~~~i~~l------------~~il~~n~~v~~~~g~~f 708 (1073)
T 3gjx_A 653 EHLIEKYMLLPN------------QVWDSIIQQATKNVDILKDPETVKQL------------GSILKTNVRACKAVGHPF 708 (1073)
T ss_dssp HHHHHHHTHHHH------------HHHHHHHHHHHHCGGGGGCHHHHHHH------------HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHhhcCchhccChHHHHHH------------HHHHhhhHHHHhhcchhH
Confidence 333333322111 111112111 0111110 001111 123456677888999999
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
.|++..+.+.++..-+ ..-......+..-|....+. ...+++ -.+|.+.++++...+..
T Consensus 709 ~~~~~~i~~~~l~~y~--------~~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~------ 767 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYK--------CLSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR------ 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc------
Confidence 9999998887764321 11111111111111111000 001111 01455666666665422
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHH--cc---CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV--RS---DVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~--~~---D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~l 1886 (2612)
.+| .+ .+.+.+- +.++..+... .+ -...+|-.....++..+....+..+..++..+
T Consensus 768 -------~~~----~~----~v~~~~i----~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 768 -------SND----PQ----MVAENFV----PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp -------CSC----HH----HHHHHTS----HHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred -------CCC----HH----HHHHHhH----HHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 000 11 1111111 1122222111 01 12334444444455555444444455555555
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhchh-------hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000051 1887 MNTLISSLA---SSSSERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2612)
Q Consensus 1887 l~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~ 1954 (2612)
+..-+..++ +..++.|..-.+.+..+...+... ....++..+.-+++.+.+++-..+...+.+++.+.
T Consensus 829 f~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~ 906 (1073)
T 3gjx_A 829 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 906 (1073)
T ss_dssp HHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHh
Confidence 555566665 568999999999999998886543 23446666666777777777766666666666543
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.60 E-value=7.7e-13 Score=186.11 Aligned_cols=506 Identities=11% Similarity=0.058 Sum_probs=324.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhch
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPK 1499 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ 1499 (2612)
-+|.++..+.+++..+|.++...++..-.. .-....+|.|+..|.+.+..+|..|+.+|+.++...+.. .....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 367778888888889998887777644211 112667888888888889999999999999998643221 1112357
Q ss_pred hHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000051 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1500 ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
+++.|+..|.+ .++.+|..|+.+|..++..- ... ..+ . -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~---~~~---~~i------------------~------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHR---EGL---LAI------------------F------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH---HHH---HHH------------------H------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc---hhH---HHH------------------H------------HcCCH
Confidence 88889988874 48999999999999887531 100 000 0 01256
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 1653 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---- 1653 (2612)
|.|.+.+.+.+..++..|+.+|.+++..... ....+. ...++.+..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777778888889999999999999875211 112221 468899999999999999999999999887522111
Q ss_pred CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccc
Q 000051 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2612)
Q Consensus 1654 ~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~-~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~ 1730 (2612)
.-...++.|+..+++......+..++..+..+...-.. ..+ ...++.++..+.+.+..+++.++.++..++...+..
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 11255778888887665554444445555554421111 111 346788888888888999999999999998765431
Q ss_pred hhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhc---hh-hhhHHHHhhccCC-Cch-HHHHHHHHHHHHHHH
Q 000051 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1804 (2612)
Q Consensus 1731 f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~---~i-~~llp~L~~~l~d-~~w-~vR~~a~~ll~~ll~ 1804 (2612)
.....++|.++..+.+++..+|..|..++..+....... .+ ...+|.+.+.+.+ .++ .+|..++..++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 223568999999999999999999999988775421110 00 1245555555544 233 789999988887631
Q ss_pred HhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHhcChhhHHHHH
Q 000051 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM 1883 (2612)
Q Consensus 1805 ~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l 1883 (2612)
. +.+ .+.....+... ..++.|...+.+.+ +.+|..|+.+++.++.+... ...+.
T Consensus 473 ~--------------~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLR 527 (780)
T ss_dssp S--------------STT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHH
T ss_pred c--------------Cch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 0 011 00011112111 12444444554444 69999999999999864322 12221
Q ss_pred -HHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCCh
Q 000051 1884 -PVLMNTLISSLASSS----------------------SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1937 (2612)
Q Consensus 1884 -~~ll~~L~~~L~~~~----------------------~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1937 (2612)
..+++.++..+.+.+ ..++..++.+|+.++...... .....+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 123445555444322 456677788888775321111 124568888999999999
Q ss_pred hHHHHHHHHHHHHHHhhChhhHHHhHh--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Q 000051 1938 SRRQGVCIGLSEVMASAGKSQLLSFMD--ELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1938 ~vR~~a~~aL~~li~~~~~~~l~~~l~--~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g 1997 (2612)
+++..++.+|+.+... ......+. ..++.+...+.+++++||..|..++..+.....
T Consensus 608 ~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999987532 22222332 367888899999999999999999999876544
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.60 E-value=2.1e-13 Score=181.39 Aligned_cols=345 Identities=13% Similarity=0.073 Sum_probs=254.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhhHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHH-
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~-~~~~~~~~v~--~ilp~ll~~l~D~-~~~VR~aa~~al~~i~~~l~~~- 1454 (2612)
++.+.+.+++. ++..|..|+.++..+... ........+. .++|.++..+.++ ++.+|..|..++..+...-+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45566677766 789999999999887652 2222334443 5899999999988 8999999999999887633222
Q ss_pred --hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhh
Q 000051 1455 --GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1455 --~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ ...+|.+++.+.++++.+|..|+.+|+.++...+......+ ..++|.+..++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11 46899999999999999999999999999987654322222 4688999999985 7899999999999999965
Q ss_pred c-CC---hhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccc--cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000051 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2612)
Q Consensus 1530 ~-~~---~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~--~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~ 1602 (2612)
. .. ..+..++|.|.+.+.+++..++ .++..+....... ....-.-..++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 11 2347899999999988887776 4555554311100 00001113468888999999999999999999999
Q ss_pred HhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC---Cc-hhhHHHHHHHhccCCCHHHHHH
Q 000051 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2612)
Q Consensus 1603 l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~---~~-~~ll~~L~~~L~~~~~~~~R~~ 1677 (2612)
++.. .+......+ ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.++..+.+.. ..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHH
Confidence 9863 211111122 258899999999999999999999999998632211 11 367888888887654 568999
Q ss_pred HHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhc
Q 000051 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728 (2612)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g 1728 (2612)
++.+++.++.....+.. ..++|.+++.+.+.++.+|+.++.++..+....+
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 99999999876443322 3578999999999999999999999999887543
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.57 E-value=1.5e-12 Score=176.76 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=279.5
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000051 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2612)
Q Consensus 1338 li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~ 1414 (2612)
-++.+++.|.. ++...|..|+..|..++.+.. ...+....+++.|.+++.+..++..|..|+.+++.++.+.+...
T Consensus 75 ~l~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 35666666643 457888999999988876543 12233346888899999887459999999999999987533222
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhh-cCCChhhHHHHHHHHHHHHhh
Q 000051 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2612)
Q Consensus 1415 ~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L-~~~~w~~r~~a~~~L~~ia~~ 1488 (2612)
...+. ..+|.++..+.++++.||+.|..++..+...-+.. .+ ...+|.|+..+ .+.++..+..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 58999999999999999999999999997643321 12 34789999999 677899999999999999987
Q ss_pred CchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1489 ~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
.|.........++|.|..++.+.++.|+..|+++|+.++.... ...+.+ .
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~----------------------~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAV----------------------I------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHH----------------------H-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHH----------------------H-------
Confidence 5544444567899999999999999999999999999985321 100100 0
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L 1646 (2612)
-..++|.+...+.+.++.++..|+.++++++.. .+......+ ..+++.+..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 012456677777777889999999999999863 211111122 35788999999998 999999999999999
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhHHH
Q 000051 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 1717 (2612)
Q Consensus 1647 ~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~~~ 1717 (2612)
+....+. .-..++|.|+..+.+. +..+|..++.+|+.++.....+.. ...++.++..+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632211 1236788888888766 456888999999998876444422 35688899999999999999999
Q ss_pred HHHHHhhhhhcc-------chhhh---HHh--HHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 1718 TLFKYLPRSLGV-------QFQNY---LQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2612)
Q Consensus 1718 ~~l~~L~~~~g~-------~f~p~---l~~--iip~ll~~L~d~~~~VR~~Al~al~~l 1764 (2612)
.++..+...... ...+| +.. .++.+.....++++.++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999875533 11223 222 355566666677777777776665543
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.56 E-value=1.1e-10 Score=166.50 Aligned_cols=608 Identities=11% Similarity=0.091 Sum_probs=355.2
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCC----CchhhHHH
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE----NFPDLVSW 1661 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~ 1661 (2612)
++..|+.|.+.+..+-+. .+ .......++.++ ++.+|-.|+..|...+..++++ ....+-..
T Consensus 21 d~~~r~~A~~~L~~~q~s-p~----------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-ST----------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-TT----------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-hh----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 567777787777776542 11 233334444432 5788888888887777755555 44444445
Q ss_pred HHHHhcc----CCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCCh-hhHhHHHHHHHHhhhhhccc------
Q 000051 1662 LLDALKS----DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQ------ 1730 (2612)
Q Consensus 1662 L~~~L~~----~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~-~vR~~~~~~l~~L~~~~g~~------ 1730 (2612)
++..+.. ..+...|...++.++.++....++.|+.+++.+++.++..+. ..-...+..+..+.+-..+.
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~ 169 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTD 169 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCH
Confidence 5554442 234457778888888888777777777777777776654333 23334444555443332210
Q ss_pred ------------hhhh-HHhHHHHHHhhc----CCCChhHHHHHHHHHHHHHHHhhhchh--hhhHHHHhhccCCCchHH
Q 000051 1731 ------------FQNY-LQQVLPAILDGL----ADENESVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGIFNDNWRI 1791 (2612)
Q Consensus 1731 ------------f~p~-l~~iip~ll~~L----~d~~~~VR~~Al~al~~lv~~~~~~~i--~~llp~L~~~l~d~~w~v 1791 (2612)
+... ++.+.+..+..+ ...++.++..+++++...+.-.+...+ +.+++.+...+.+ ..+
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~ 247 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EEL 247 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHH
T ss_pred HHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHH
Confidence 0001 222333333333 235667888888888877654333322 3466666666655 467
Q ss_pred HHHHHHHHHHHHHHhcCCcccc----------cccC--CCCCCccchHHH-------HHHHHHHh-Ch------------
Q 000051 1792 RQSSVELLGDLLFKVAGTSGKA----------LLEG--GSDDEGASTEAH-------GRAIIEVL-GR------------ 1839 (2612)
Q Consensus 1792 R~~a~~ll~~ll~~~~~~~~~~----------~~~~--~~ddd~~~~~~~-------~~~l~~~L-g~------------ 1839 (2612)
|..+++++.+++.+-.....+. .... .+++|.+-.+.. +..+...- ..
T Consensus 248 r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~ 327 (980)
T 3ibv_A 248 RCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCS 327 (980)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHH
Confidence 8888888888765421110000 0000 001111111111 11111110 01
Q ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhc---------ChhhHHHHHHHHHHHHHHHhcCCC------------
Q 000051 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN---------TPKTLKEIMPVLMNTLISSLASSS------------ 1898 (2612)
Q Consensus 1840 ~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~---------~~~~l~~~l~~ll~~L~~~L~~~~------------ 1898 (2612)
.....+++.++.+..+.+.+|-..++..|..+... .+..++++++.+++.++..+.-++
T Consensus 328 ~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 328 FQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 23445777777888888889999999999988753 245678899999999999887321
Q ss_pred ----HHHHHHHHHHHHHHHHHhchh-hhh----hHHHHHhhhcC---CCChhHHHHHHHHHHHHHHhhChhhH-----HH
Q 000051 1899 ----SERRQVAGRALGELVRKLGER-VLP----SIIPILSRGLK---DPSASRRQGVCIGLSEVMASAGKSQL-----LS 1961 (2612)
Q Consensus 1899 ----~~~R~~A~~aL~~lv~~~~~~-~l~----~llp~L~~~L~---d~~~~vR~~a~~aL~~li~~~~~~~l-----~~ 1961 (2612)
.+.|.... .+-+.+..+|+. +++ .+.+.+.+.+. +.+|..+.+++.+++.+.+.+..... .+
T Consensus 408 ~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~ 486 (980)
T 3ibv_A 408 EAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDK 486 (980)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSC
T ss_pred HHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccc
Confidence 12454444 555666666655 455 56666666553 35688899999998887665543111 13
Q ss_pred hHhHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhccccc
Q 000051 1962 FMDELIPTIRTALC-----DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAV 2036 (2612)
Q Consensus 1962 ~l~~ll~~l~~~L~-----D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~v 2036 (2612)
+++.+++.+...+. ++++.||..++.++++..+.+... .+++|.+++.+-++-
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~~~L~~ll~~~-------------------- 544 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIPALIEYFVGPR-------------------- 544 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHHHHHHHHTSTT--------------------
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHhccc--------------------
Confidence 45667777777654 789999999999999987765431 233444333221100
Q ss_pred ccccchhhcc--CCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCC-----CC----------------HHHHHH
Q 000051 2037 LPHILPKLVH--LPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DD----------------MDVQSL 2093 (2612)
Q Consensus 2037 lp~Lip~L~~--~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~-----~~----------------~~vr~~ 2093 (2612)
.+.+ ..++..++.++..+.+.++..+.+|++.|+..+-..+.- .+ .+-+-.
T Consensus 545 ------gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~ 618 (980)
T 3ibv_A 545 ------GIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLY 618 (980)
T ss_dssp ------TTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHH
T ss_pred ------cccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHH
Confidence 0111 124445778888888888888999999999888777642 11 113555
Q ss_pred HHHHHHHhhhhccc------ccHHHHHHHHH----hhcCCC----ChhHHH-HHHHHHHHHHHhcccc------hhccHH
Q 000051 2094 AKEAAETVTLVIDE------EGVESLVSELL----KGVGDN----QASIRR-SSAYLIGYFYKNSKLY------LVDEAP 2152 (2612)
Q Consensus 2094 a~~al~~l~~~~~~------~~l~~ll~~Ll----~~l~~~----~~~vR~-~A~~~L~~l~~~~~~~------~~~~~~ 2152 (2612)
..++++.++...+. ..++.+++.++ ..+... +...+. ..+.++|.+.+..+.. +...+.
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~ 698 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFN 698 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHH
Confidence 77888888876531 23444444433 333221 221211 4566678877754321 334556
Q ss_pred HHHHHHHHHhc--CCChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhh
Q 000051 2153 NMISTLIVLLS--DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPL 2230 (2612)
Q Consensus 2153 ~il~~L~~ll~--d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~i 2230 (2612)
++++.++..++ ..+..||+++..++.+++...+.+.+ ++
T Consensus 699 ~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~---------------------------------------p~ 739 (980)
T 3ibv_A 699 KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML---------------------------------------PK 739 (980)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT---------------------------------------TT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH---------------------------------------HH
Confidence 66777766666 56788999999999998876654332 33
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHH
Q 000051 2231 LPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 2278 (2612)
Q Consensus 2231 lp~l~~~L~~~-~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~ 2278 (2612)
+|.+++.+.++ +...-......++.++...+. .+.+.+..++.|++.
T Consensus 740 lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~-~~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 740 VPQLISILLNSIDMNELVDVLSFISQLIHIYKD-NMMEITNRMLPTLLM 787 (980)
T ss_dssp HHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34333333321 222233456777888888874 477777777777665
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.55 E-value=7.1e-13 Score=179.86 Aligned_cols=350 Identities=13% Similarity=0.125 Sum_probs=254.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCc---chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000051 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2612)
Q Consensus 1339 i~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~---~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~ 1415 (2612)
++.+++.|.. ++...|..|+..|..++..... ..+....+++.|.+++.+..++.+|..|+.+++.++.+.+. ..
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QT 166 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HH
Confidence 4455555543 3467778888888877654221 12223467888888888765799999999999998864322 11
Q ss_pred hhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC
Q 000051 1416 PYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2612)
Q Consensus 1416 ~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~ 1489 (2612)
..+ ...+|.++..+.++++.||..|..++..+...-+.. .+ ..++|.++..+.+.++.++..++.+|+.++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 222 257899999999999999999999999997643222 11 467899999999988999999999999999764
Q ss_pred -chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1490 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1490 -p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
+..-......++|.|..++.+.++.||..|+++|+.++... +.. ...+.+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~---~~~~~~------------------------ 297 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA---IQAVID------------------------ 297 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH---HHHHHH------------------------
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH---HHHHHh------------------------
Confidence 43333345788999999999999999999999999998532 110 000000
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
..++|.+...+.+.++.+|..++.++++++.. .+......+ ..+++.+..++.++++.+|..|+.+|+.++
T Consensus 298 ------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 298 ------VRIPKRLVELLSHESTLVQTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp ------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12456677777788889999999999998863 211111112 368899999999999999999999999998
Q ss_pred hhhCCC---Cc-hhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh--hhH-----HhHhHHHHHhccCCChhhHhHH
Q 000051 1648 RGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF-----EHILPDIIRNCSHQRASVRDGY 1716 (2612)
Q Consensus 1648 ~~~g~~---~~-~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~l-----~~llp~l~~~~~~~~~~vR~~~ 1716 (2612)
....+. .+ ..++|.|+..+.+. +..+|..++.+|+.++...+. +.. ..++|.++..+.+.++.+|..+
T Consensus 370 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 370 AGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 632211 11 35788888888654 456889999999999876544 322 3478899999999999999999
Q ss_pred HHHHHHhhhhhc
Q 000051 1717 LTLFKYLPRSLG 1728 (2612)
Q Consensus 1717 ~~~l~~L~~~~g 1728 (2612)
+.++..+.....
T Consensus 449 l~aL~~l~~~~~ 460 (530)
T 1wa5_B 449 LDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999887553
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.2e-13 Score=165.38 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=169.6
Q ss_pred cCCChHHHHHHHHHHHH-HHhhhCcc---hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hhHHHH
Q 000051 1348 KSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQM 1421 (2612)
Q Consensus 1348 ~~~~~~~R~~Aa~~L~~-l~~~lg~~---~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~~~~-~~v~~i 1421 (2612)
.+.+|.+|++|...|.. ++.+.+.- ......+++.|.+.+.++.|..+|..|+.+++.++++++ ..|. +|...+
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 56789999999999999 88653321 112236888899999444489999999999999999999 8899 999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---h-HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCc---hhhh
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLS 1494 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~---~-v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p---~~l~ 1494 (2612)
+|.++..++|..+.||+++..++..++..+++. . ...+++.++..|++++|++|.+++.+|+.++...+ .++.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~ 185 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ 185 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH
Confidence 999999999999999999999999999987543 2 56899999999999999999999999999998766 6788
Q ss_pred hhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHH
Q 000051 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2612)
Q Consensus 1495 ~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~L 1542 (2612)
.++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 186 ~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 186 RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 899 999999999999999999999999999999999987777776664
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.54 E-value=1.6e-12 Score=176.48 Aligned_cols=389 Identities=14% Similarity=0.103 Sum_probs=284.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCCC
Q 000051 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1576 ~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~-~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
..+|.+...+.+.++.+|..|+..+..++..-..+ .... .-..++|.+..++.++ ++.+|..|+.+|+.++....+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~-~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP-PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC-SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34677788888888999999999999987642121 1111 1246889999999987 8999999999999998632111
Q ss_pred --C--chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh--hh-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhh
Q 000051 1654 --N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2612)
Q Consensus 1654 --~--~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~--~~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~ 1725 (2612)
. -...+|.|+..+.+. +..+|..++.+|+.++..... .. . ...+|.++..+.+.++.+|..++.++..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 1 146788888888765 466888999999988753211 11 1 4578899999988999999999999999987
Q ss_pred hh-ccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhh---chh-hhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1726 SL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1726 ~~-g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~---~~i-~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
.- +..-..+...++|.++..+.++++.+|..++.++..+...... ..+ ..++|.+...+.+.+|.+|..++..++
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 54 2222345677999999999999999999999999887743221 112 247788888889999999999999999
Q ss_pred HHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHH
Q 000051 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2612)
Q Consensus 1801 ~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~ 1880 (2612)
.+... + + .....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+....
T Consensus 325 ~l~~~-------------~---~----~~~~~~~~-------~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 325 NIVTG-------------N---D----LQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp HHTTS-------------C---H----HHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHcC-------------C---H----HHHHHHHH-------cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87421 0 0 01111111 13566666677888999999999999999987766555
Q ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch--h-----hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000051 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--R-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1881 ~~l-~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~--~-----~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2612)
.++ ..+++.++..+.+.++.+|..|+.+|+.++...+. . ....++|.|...+.++++.+|..++.+|..++.
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444 35677888888888999999999999999886443 2 124578888888999999999999999999876
Q ss_pred hhChhh------HHHhH-----hHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000051 1953 SAGKSQ------LLSFM-----DELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2612)
Q Consensus 1953 ~~~~~~------l~~~l-----~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~ 1993 (2612)
...... ..++. ...++.+...+.++++++++.|..++..+.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 543210 11122 234677777888999999999888777664
No 38
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.54 E-value=1.1e-09 Score=155.79 Aligned_cols=384 Identities=12% Similarity=0.095 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhc--hhhhhhHHH
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~-----~~~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2612)
+.+|..|++++-++++++.+... ...++++.+++.++..+.+ +...+|..++.++|...+.+. +..++.+++
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~ 543 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 36899999999999999886543 4678999999999988763 344566778889988777654 347888889
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhH-------HHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l-------~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
.+.+++.++++.+...+|.++..++..++.... .+|++.++..+.....+-++.-+..+.++++.+....+..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 999999988999999999999999888775432 4688999999988888778888888999999998877643
Q ss_pred h-hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC-cc--hhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LS--AFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-~~--~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
. ..+++..++..+ ...+.+++...+. -|.+ +.++. .. ....+++++++...|..+.|++..+
T Consensus 624 ~~~~~~l~~L~~~~---------~~~~~~l~~~~~~--~~~~---~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i 689 (1023)
T 4hat_C 624 AERNRLLSDLMQLP---------NMAWDTIVEQSTA--NPTL---LLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1023)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHH--CTTG---GGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred hhHHHHHHHHHHhH---------HHHHHHHHHHHhc--Cchh---hcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 2 333333333221 1112222210000 0000 00000 00 0123466677777899999999999
Q ss_pred HHHHHHhcCC-----------------CCHHH------HHHHHHHHHHhhhhccc------ccHHHHHHHHHhhcCCCCh
Q 000051 2076 LPALLSAMGD-----------------DDMDV------QSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2076 l~~Ll~~L~~-----------------~~~~v------r~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
++.+++..+. ..+.+ |......+...+....+ .-+++++..++.-.....+
T Consensus 690 ~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~ 769 (1023)
T 4hat_C 690 YYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVP 769 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCCh
Confidence 9888865321 11222 22233333333332221 2356666666665555556
Q ss_pred hHHHH-HHHHHHHHHHhcccchhccHHHHHHHHHH----HhcC---CChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2127 SIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2127 ~vR~~-A~~~L~~l~~~~~~~~~~~~~~il~~L~~----ll~d---~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
..|.. .+.++..++...+..+.+.++.++..++. ++++ ..++.|..-..-+.++..+.+...+
T Consensus 770 ~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~--------- 840 (1023)
T 4hat_C 770 DARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL--------- 840 (1023)
T ss_dssp GGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH---------
T ss_pred hhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHH---------
Confidence 66654 45566677777777777778877777654 4443 4577787777777777665543211
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCC-cCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh----h----hhhhch
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE----Q----SLKEFV 2269 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p-~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~----~----~l~p~v 2269 (2612)
.+| .....++..++-++.+...++-..+...+.+++..... + -++.|.
T Consensus 841 -----------------------~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~ 897 (1023)
T 4hat_C 841 -----------------------ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1023)
T ss_dssp -----------------------TSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred -----------------------cCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 111 22344566667778888888888888888777754431 1 122344
Q ss_pred hhhhHHHHHHhcCCC
Q 000051 2270 IPITGPLIRIIGDRF 2284 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~ 2284 (2612)
..+..-.+.++.|..
T Consensus 898 ~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 898 FIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhCch
Confidence 444444555666553
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.52 E-value=4.7e-12 Score=171.89 Aligned_cols=385 Identities=15% Similarity=0.119 Sum_probs=281.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHH-
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~-~~~~~~v-~~ilp~ll~~l~D~~-~~VR~aa~~al~~i~~~l~~~- 1454 (2612)
-++.+.+.+.+. ++..|..|+.++..++.+.+ ......+ ..++|.++.++.+++ +.+|..|..++..++...+..
T Consensus 75 ~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 355666677766 79999999999988876543 2122222 268999999999886 999999999999998743332
Q ss_pred -hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhh
Q 000051 1455 -GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1455 -~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ ...+|.++..|.+++..++..|+.+|+.++...+......+ ..++|.|+.++ .+.++.++..|+++|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 11 35889999999999999999999999999976554221111 35788899999 678999999999999999864
Q ss_pred cCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC
Q 000051 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2612)
Q Consensus 1530 ~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~ 1609 (2612)
..++.. .....++|.|.+.+.+.++.++..++.++++++.. .
T Consensus 234 ~~~~~~------------------------------------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~ 275 (528)
T 4b8j_A 234 KPQPSF------------------------------------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--T 275 (528)
T ss_dssp SSCCCH------------------------------------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--C
T ss_pred CCCCcH------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--C
Confidence 321110 01123566666777777888999999999998753 2
Q ss_pred CCcchhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000051 1610 PKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2612)
Q Consensus 1610 ~~~l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~ 1684 (2612)
....... -..+++.+..++.++++.+|..|+.+|+.++...... .-..++|.|...+.+..+..+|..++.+++.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 1111111 2358899999999999999999999999998633211 1145788888888766356788899999999
Q ss_pred HHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHH
Q 000051 1685 VLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAAL 1758 (2612)
Q Consensus 1685 i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al 1758 (2612)
++...... . . ..++|.++..+.+.++.+|..++.+++.++.........|+ ..+++.+...+.+.++.++..++
T Consensus 356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 87532211 1 1 36788899988888999999999999999887555555665 35899999999999999999999
Q ss_pred HHHHHHHHHhhhc----------hhh-----hhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1759 GAGHVLVEHYATT----------SLP-----LLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1759 ~al~~lv~~~~~~----------~i~-----~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
.++..++...... ... ..++.+.....+.+..++..+..++..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999887644321 111 1345566667778888888888877765
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.52 E-value=1.5e-11 Score=170.51 Aligned_cols=471 Identities=13% Similarity=0.076 Sum_probs=304.3
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh-hhhchhHHHHhhhhcCC-CHHHHHHHHHHHHHHHhhcCChhHh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIA 1536 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~-~~L~~ivp~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2612)
.+|.|+..|.++++.+|..|+.+|+.++...+.... ...+.+++.+++.|.+. ++++|..|+.+|..++.. ++.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~---~~~- 90 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG- 90 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS---HHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---hhh-
Confidence 455555566666666666666777766654332211 11246788888888764 899999999999987653 110
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1537 ~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
+. .+. -...+|.|.+.+.+.++.++..|+.++.+++... + .....+
T Consensus 91 -----------------~~---~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~-~~~~~v 136 (644)
T 2z6h_A 91 -----------------LL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-E-GAKMAV 136 (644)
T ss_dssp -----------------HH---HHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-T-THHHHH
T ss_pred -----------------HH---HHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-c-hhHHHH
Confidence 00 000 0125677777788888899999999999998752 1 122222
Q ss_pred -HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh
Q 000051 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2612)
Q Consensus 1617 -l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~ 1691 (2612)
-...+|.+..++.++++.++..+..+|..++...++. .-...++.|+..+.+......+..++..+..+...-..
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 2568999999999999999999999999988632211 11356788888887765554555555555555421111
Q ss_pred -hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1692 -~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
..+ ...++.++..+.+.+..+++.++.++..++...+.. .....++|.++..+.++++.+|..+..++..+....
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 111 346788888888889999999999999998764431 234578999999999999999999999988776421
Q ss_pred hh--c-hh-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhH
Q 000051 1769 AT--T-SL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2612)
Q Consensus 1769 ~~--~-~i-~~llp~L~~~l~d--~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~ 1842 (2612)
.. . .. ...+|.+.+.+.+ +.+.+|..++..++.+... +.++ +.....+.+
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~--------------~~~~---~~~q~~v~~------- 350 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQEA---EMAQNAVRL------- 350 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STTH---HHHHHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC--------------CchH---HHHHHHHHH-------
Confidence 11 1 11 1245555555543 2378999999999887311 0010 001111111
Q ss_pred HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcChhhHHHHH-HHHHHHHHHHhcCC----------------------C
Q 000051 1843 NEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS----------------------S 1898 (2612)
Q Consensus 1843 ~~vl~~L~~~~~D~-~~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~~L~~~L~~~----------------------~ 1898 (2612)
...++.+...+.+. +..+|..|+.+++.++.+.... ..+. ...++.++..+.+. +
T Consensus 351 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 12355555555554 4799999999999998643321 2221 23445555555432 3
Q ss_pred HHHHHHHHHHHHHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHH
Q 000051 1899 SERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTA 1973 (2612)
Q Consensus 1899 ~~~R~~A~~aL~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~ 1973 (2612)
..++..+..+|..++...... .....+|.|...+.+++++++..++.+|+.+... + .....+ ...++.+...
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~-~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-EAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--H-HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-HHHHHHHHcCChhHHHHH
Confidence 455666777777665432111 1245678888889999999999999999987532 1 122222 3457788889
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHhC
Q 000051 1974 LCDSILEVRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1974 L~D~d~~Vr~~A~~al~~l~~~~g 1997 (2612)
+.+++++||..|+.+++.+....+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999865443
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.52 E-value=1e-11 Score=172.39 Aligned_cols=460 Identities=11% Similarity=0.075 Sum_probs=316.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC-cchh
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~~l 1374 (2612)
.++.|+..|+++++.+|..++.+|..+....... ....++.++..|..+++...|..|+..|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 5778888889999999999999999887544321 235788888888876678899999999998775422 1122
Q ss_pred hhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH
Q 000051 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2612)
Q Consensus 1375 ~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~ 1453 (2612)
.....++.|.+++.+. ++..|..|+.++..++.........++ ...+|.++..+.++++.++..+..++..+...-+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 2336788888888887 799999999999999977543233333 36899999999999999999888888888643221
Q ss_pred H--hH--HhHHHHHHhhhcCCC-hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1454 ~--~v--~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
. .+ ...+|.|++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+.+++.+.+..++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 345777888777654 455677888888887643221111113578999999999999999999999999976
Q ss_pred hcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccC
Q 000051 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2612)
Q Consensus 1529 ~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~ 1608 (2612)
...+.. ....++|.|.+.+.+.++++|..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 432100 0113566666677777788899999999888763
Q ss_pred CCCcchh-hHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCCC-------CchhhHHHHHHHhccCCCHHHHHHH
Q 000051 1609 EPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2612)
Q Consensus 1609 ~~~~l~~-~l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~~-------~~~~ll~~L~~~L~~~~~~~~R~~a 1678 (2612)
.++.... .-...++.|..++.+. .+.+|..|+.+|+.++...+++ .....+|.+.+.|.+.....+|..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 2111111 1124677777777653 3899999999999997543321 0135688888888876555688888
Q ss_pred HHHHHHHHHHhChh-hH--HhHhHHHHHhccCC----------------------ChhhHhHHHHHHHHhhhhhccchhh
Q 000051 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2612)
Q Consensus 1679 a~~L~~i~~~~g~~-~l--~~llp~l~~~~~~~----------------------~~~vR~~~~~~l~~L~~~~g~~f~p 1733 (2612)
+..++.+...-... .+ ...+|.+++.+.+. +..+++.++.++..++..-.. ..
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~ 451 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RI 451 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HH
Confidence 88888876421111 11 34566666655443 245666777777777654322 22
Q ss_pred hH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh-hchh--hhhHHHHhhccCCCchHHHHHHHHHHHHHH
Q 000051 1734 YL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1734 ~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~-~~~i--~~llp~L~~~l~d~~w~vR~~a~~ll~~ll 1803 (2612)
.+ ...+|.+...+.+.++.++..+..++..+...-. ...+ ...++.+.+.+.+++..+|..+...++.+.
T Consensus 452 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 3478999999999999999999988877653200 0111 124667778888999999999999998873
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.7e-13 Score=163.31 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=165.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhCc-chhhhhcHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000051 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2612)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~-~~l~~~~i~~~L~~~i~-~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~ 1419 (2612)
+++.+ ++.+|..|++|+.+|..++.+.+. ..-....+++.+...+. +. +..+|.+|+.+++.++..++..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 466899999999999999987432 11112368888999995 66 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC-ch-hhhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~-p~-~l~~~L 1497 (2612)
.++|.++..++|+++.||+++..++..++...+ +..++|.+...+++++|++|..++..|+.++... |+ ....++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999988764 5789999999999999999999999999977654 55 357789
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHH
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp 1540 (2612)
+.++|.+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999988544554443
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.51 E-value=6.5e-12 Score=172.09 Aligned_cols=478 Identities=14% Similarity=0.083 Sum_probs=302.6
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+....+..++.+.+++...|+-+...+..++...++. .--+++.+.+-++|+++.+|..|.++|+.++.
T Consensus 65 G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~----~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---- 136 (618)
T 1w63_A 65 GYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV----HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---- 136 (618)
T ss_dssp TCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----
T ss_pred CCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----
Confidence 3345566777778888888888887777777666544432 23456777788899999999999999998873
Q ss_pred hh-HhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCC
Q 000051 1533 PE-IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2612)
Q Consensus 1533 ~~-i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~ 1610 (2612)
++ ...++|.+.+.+.|++..+| .|+.++... .. ..+.....+++.+...+.|+++.++..|+.+++.++.. ++
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l--~~-~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~--~~ 211 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHV--IR-KVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER--SP 211 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--HH-HCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS--HH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HH-HChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh--Ch
Confidence 43 46778889999999999988 455544431 00 11223345667777888999999999999999988753 22
Q ss_pred CcchhhHhhhHHHHHHHhc---------------CCCHHHHHHHHHHHHHHHhhhCC--CCchhhHHHHHHHhccCC--C
Q 000051 1611 KDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDN--S 1671 (2612)
Q Consensus 1611 ~~l~~~l~~ll~~L~~~L~---------------d~~~~VR~~A~~aL~~L~~~~g~--~~~~~ll~~L~~~L~~~~--~ 1671 (2612)
+ ...++..++|.+...|. .+++..+....++++.++..-.+ +.+.++++.+........ +
T Consensus 212 ~-~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 212 D-MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H-HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence 1 12233344554444433 24788899999999988753211 123334444433221111 1
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
..+...++.++..+.. ........++.+...+.++++.+|..++..++.++...+..|.+| .+.++.++.|++.
T Consensus 291 ~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~d~ 364 (618)
T 1w63_A 291 NAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSSCH
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCCCh
Confidence 2344455555443211 111123345666667788899999999999999998877666555 4566777889999
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHH
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~ 1831 (2612)
+||..+++.+..++. ...++.+++++...+.+.+..+|..++..++.+....++. .
T Consensus 365 ~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~----------------~----- 420 (618)
T 1w63_A 365 SIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS----------------K----- 420 (618)
T ss_dssp HHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC----------------H-----
T ss_pred hHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc----------------H-----
Confidence 999999888776543 3345667788877777778889999999999886432100 0
Q ss_pred HHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000051 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2612)
Q Consensus 1832 ~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~ 1911 (2612)
..++..+...+.+....++..++..+..++...|......++.+...+.... ..+.. ...+++++|+
T Consensus 421 -----------~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~-~~~~~-~~~~~wilGE 487 (618)
T 1w63_A 421 -----------RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY-SQQPL-VQVAAWCIGE 487 (618)
T ss_dssp -----------HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC-SCSHH-HHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc-ccHHH-HHHHHHHHhh
Confidence 1122222222233333455666777777777666543344555444443211 12343 4468999999
Q ss_pred HHHHhchh---------hh-hhHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcH
Q 000051 1912 LVRKLGER---------VL-PSIIPILSRGLK--DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2612)
Q Consensus 1912 lv~~~~~~---------~l-~~llp~L~~~L~--d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~ 1979 (2612)
........ +. ..+++.+...+. ..++.+|..+..++..+....+. ..+.+...+.....|.|.
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d~ 562 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSIDV 562 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSCH
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCCH
Confidence 98765321 11 234444444443 56889999999999988665432 123444445556778899
Q ss_pred HHHHHHHHHHHHH
Q 000051 1980 EVRESAGLAFSTL 1992 (2612)
Q Consensus 1980 ~Vr~~A~~al~~l 1992 (2612)
+||+.|...+.-+
T Consensus 563 evrdRA~~y~~ll 575 (618)
T 1w63_A 563 ELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.51 E-value=1.2e-11 Score=168.05 Aligned_cols=461 Identities=11% Similarity=0.068 Sum_probs=306.2
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC-cc
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-IS 1372 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-----~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg-~~ 1372 (2612)
...++.++..++++++.+|..++.+|..+....... ....++.+++.|..++++..|..|+.+|..+..... ..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 346788888899999999999999998876433211 135788888888777678999999999999875422 11
Q ss_pred hhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1373 ~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
.+...+.++.+.+.+.+. ++..|..|+.++..++...+..-.... ...+|.++..+.++++.+|..+..++..+...-
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 222336788888888887 799999999999999876443211121 368999999999999999999988888776421
Q ss_pred cHH--h-H-HhHHHHHHhhhcCCC-hhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHH
Q 000051 1452 SAQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2612)
Q Consensus 1452 ~~~--~-v-~~ilp~Ll~~L~~~~-w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2612)
+.. . + ...+|.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 111 1 1 345777777776544 4455567778888875422111111146889999999999999999999999999
Q ss_pred HhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1527 GSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1527 ~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
+....... ....++|.+.+.+.+.+++++..++.++++++..
T Consensus 255 ~~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 255 SDAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HTTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred hcCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 86432100 0113566666677777788889999999888752
Q ss_pred cCCCCcchhh-HhhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhCCC-----C--chhhHHHHHHHhccCCCHHHHH
Q 000051 1607 VTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1607 ~~~~~~l~~~-l~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~~g~~-----~--~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
+++..... -...++.+.+++.+ .++.+|..|..+|+.++...++. . -...+|.+...+.++.....|.
T Consensus 297 --~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 297 --NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp --CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred --CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 21111111 12356777777764 34899999999999997543221 0 1246788888888766556888
Q ss_pred HHHHHHHHHHHHhChh-hH--HhHhHHHHHhccCCChhhHhHH----------------------HHHHHHhhhhhccch
Q 000051 1677 GAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGY----------------------LTLFKYLPRSLGVQF 1731 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~~-~l--~~llp~l~~~~~~~~~~vR~~~----------------------~~~l~~L~~~~g~~f 1731 (2612)
.++..++.+...-... .+ ..++|.+++.+.+.++.+|..+ +.++..++.... .
T Consensus 375 ~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~--~ 452 (529)
T 1jdh_A 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--N 452 (529)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH--H
T ss_pred HHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCch--H
Confidence 8888888876421111 11 3467777777766666666544 344444433211 0
Q ss_pred hhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh-hhchh--hhhHHHHhhccCCCchHHHHHHHHHHHHH
Q 000051 1732 QNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY-ATTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1732 ~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~-~~~~i--~~llp~L~~~l~d~~w~vR~~a~~ll~~l 1802 (2612)
...+ ...++.+...+.+++++++..+..++..+...- ....+ ...++.+.+.+.+++..+|..+...+..+
T Consensus 453 ~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1111 236789999999999999999988887765210 00111 12557777778888888888887776543
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.50 E-value=1.3e-11 Score=167.71 Aligned_cols=465 Identities=12% Similarity=0.070 Sum_probs=288.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh-hhhhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l-~~~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+|.++..|.+++..+|..|+.+|+.++...+... ....+..++.+++.+.+ +++.+|..|+.+|..++.. ++.
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~~-- 93 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG-- 93 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---chh--
Confidence 3444444444444444444555555543221110 00123567788888864 4899999999999988642 111
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh-
Q 000051 1538 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2612)
+.. +. -...+|.+.+.+.+.++.++..++.++.+++..... .....
T Consensus 94 ----------------~~~---i~------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~ 140 (529)
T 1jdh_A 94 ----------------LLA---IF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVR 140 (529)
T ss_dssp ----------------HHH---HH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred ----------------HHH---HH------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 000 00 013567777778778889999999999999874211 11111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~- 1691 (2612)
-...+|.+.+++.++++.+|..+..++..++....+. .-.+.++.++..+++......+..+...+..+...-..
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 220 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccH
Confidence 2468899999999999999999999999887531110 11245777888787766554444455555554321110
Q ss_pred hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1692 VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1692 ~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
..+ ...++.++..+.+.++.+++.++.++..++...+.. .....++|.+++.+.++++.+|..+..++..+.....
T Consensus 221 ~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 111 356888888888889999999999999998765431 2345789999999999999999999999888754211
Q ss_pred h--ch-h-hhhHHHHhhccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHH
Q 000051 1770 T--TS-L-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2612)
Q Consensus 1770 ~--~~-i-~~llp~L~~~l~d--~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~ 1843 (2612)
. .. . ...+|.+.+.+.+ +++.++..++..++.+... +.+ .+.....+.+.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--------------~~~---~~~~~~~i~~~------- 354 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--------------HQE---AEMAQNAVRLH------- 354 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--------------STT---HHHHHHHHHHT-------
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--------------Cch---HHHHHHHHHHc-------
Confidence 0 00 1 1245555555543 4588999999999887311 001 11111122211
Q ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHhcChhhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHH------------
Q 000051 1844 EVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAGRAL------------ 1909 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~-~~VR~aA~~~l~~l~~~~~~~l~~~l-~~ll~~L~~~L~~~~~~~R~~A~~aL------------ 1909 (2612)
..++.+...+.+.. +.+|..++.+++.++.+... ...+. ..+++.++..+.+.++.+|..|.+++
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~ 433 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHH
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHH
Confidence 12445555555554 69999999999999864332 22222 24567777777766666666554443
Q ss_pred ----------HHHHHHhchh---hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHh
Q 000051 1910 ----------GELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTAL 1974 (2612)
Q Consensus 1910 ----------~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L 1974 (2612)
..++...... .-...+|.+...+.+++++++..++.+++.+... +. ....+ ...++.+...+
T Consensus 434 ~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHh
Confidence 3333211100 1235668888889999999999999999987432 11 11111 35678888999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 000051 1975 CDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1975 ~D~d~~Vr~~A~~al~~l 1992 (2612)
.+++++|+..|..++..+
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999988765
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.49 E-value=9.4e-11 Score=160.61 Aligned_cols=476 Identities=14% Similarity=0.111 Sum_probs=301.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
..+.+...|+...-.+..++...++ ..--.++.+.+-+.++++.+|..|.++|+.+. .+...+.++|.+.+++
T Consensus 79 ~~s~~~~~Krl~Yl~~~~~~~~~~e----~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 79 IASQKFTDKRIGYLGAMLLLDERQD----VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HHSSSHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 3466778888777777777665543 33345677777889999999999999999886 3456788899999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--hhhhhhhHHHHHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLH 2010 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g--~~~~~~ilp~Ll~ 2010 (2612)
.++++.+|..|+.+++.+.... ++.+ +.+++.+...+.|.|+.|+.+|..++..+..... ...+..++|.+++
T Consensus 152 ~~~~~~VRk~A~~al~~l~~~~-p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~ 226 (618)
T 1w63_A 152 KTSNSYLRKKAALCAVHVIRKV-PELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVR 226 (618)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHC-GGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHC-hHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999999999999999987643 3333 4567777888999999999999999988854321 1234455666665
Q ss_pred hccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCC--hhhhHhhHHHHHHHhc---CC
Q 000051 2011 ALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG--LNFHLGTILPALLSAM---GD 2085 (2612)
Q Consensus 2011 ~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~--l~~~l~~il~~Ll~~L---~~ 2085 (2612)
.|.+ ++..+ ..-.+-+....+ | ......+..+......+ ..+.+..+++.++... ++
T Consensus 227 ~L~~-------------~~~~~--~~~~~~~~~~~~-~--~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 227 ILKN-------------LIMSG--YSPEHDVSGISD-P--FLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHHH-------------HHHSC--CCTTTCSSSSSC-H--HHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSST
T ss_pred HHHH-------------HHcCC--CCccccccCCCC-C--hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 4432 11000 000000000000 0 01122333333322111 1122223444444332 22
Q ss_pred CCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCC
Q 000051 2086 DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 2165 (2612)
Q Consensus 2086 ~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 2165 (2612)
.+..+.-.++.++..+.. ........++.|...+.++++.+|..|+.+++.+....+..+.++ ...++.++.|+
T Consensus 289 ~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~----~~~i~~~l~d~ 362 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH----RSTIVDCLKDL 362 (618)
T ss_dssp HHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG----HHHHHHGGGSS
T ss_pred hHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH----HHHHHHHccCC
Confidence 234555555555544311 112233466777777888899999999999999988765545444 34677788999
Q ss_pred ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHH
Q 000051 2166 DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAEL 2245 (2612)
Q Consensus 2166 d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~ 2245 (2612)
|..+|..+.+.|..++... .+..+++.+...+.+.+.+.
T Consensus 363 d~~Ir~~alelL~~l~~~~-----------------------------------------nv~~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGN-----------------------------------------NIRGMMKELLYFLDSCEPEF 401 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSS-----------------------------------------STHHHHHHHHHHHHHCCHHH
T ss_pred ChhHHHHHHHHHHHHcccc-----------------------------------------cHHHHHHHHHHHHHhCCHHH
Confidence 9999999999888875421 12334455555566678899
Q ss_pred HHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcC-
Q 000051 2246 REQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQD- 2324 (2612)
Q Consensus 2246 r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d- 2324 (2612)
|..+..+|+.++...+ .....|++.+ +..+.+. ...++..++..+..++++.+.. + ......+.+.+.+
T Consensus 402 r~~~v~~I~~la~k~~-~~~~~~v~~l----l~lL~~~-~~~v~~~~~~~l~~ii~~~p~l-~---~~~v~~L~~~l~~~ 471 (618)
T 1w63_A 402 KADCASGIFLAAEKYA-PSKRWHIDTI----MRVLTTA-GSYVRDDAVPNLIQLITNSVEM-H---AYTVQRLYKAILGD 471 (618)
T ss_dssp HHHHHHHHHHHHHSSC-CCHHHHHHHH----HHHHHHT-GGGSCSSHHHHHHHHHHHSCST-H---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHH----HHHHHhc-cchhHHHHHHHHHHHHhcChhH-H---HHHHHHHHHHHhcc
Confidence 9999999999998765 4455665554 4444433 2345566777788888776542 2 2234444455543
Q ss_pred -CCHHHHHHHHHHHHHHHhccC------------ChhHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHhcCCCcChHHH
Q 000051 2325 -STRTVRSSAALALGKLSALST------------RVDPLVGDLLSSLQ--VSDAGIREAILTALKGVLKHAGKSVSSAVK 2389 (2612)
Q Consensus 2325 -~~~~vR~~Aa~aLg~L~~~~~------------~~~~~l~~Ll~~l~--~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~ 2389 (2612)
.++.+...+++++|.+...-. ....+++.|...++ ..+..+|..++.|+..+....+. ..
T Consensus 472 ~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-----~~ 546 (618)
T 1w63_A 472 YSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-----TV 546 (618)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS-----CH
T ss_pred cccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc-----hH
Confidence 244555679999999954211 11223444444343 45688999999999888776543 24
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2390 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2390 ~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
+.+...|.....+.+.++|..|...+.-+..
T Consensus 547 ~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 547 NRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 5566666667778899999998887766654
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.41 E-value=5.2e-11 Score=159.78 Aligned_cols=393 Identities=15% Similarity=0.157 Sum_probs=272.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---HHhH--HhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLS---AQGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1422 lp~ll~~l~D~~~~VR~aa~~al~~i~~~l~---~~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
++.++..+...++.++..|..+++.+.+.-. -+.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.+++...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5667788888899999999999988865322 1222 4579999999975 45788999999999999877765433
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH------hhHHHHHHhhcCCCChhHHHHHHHHHhcccccc
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~ 1568 (2612)
.. ...+|.|+.+|.++++.||+.|+++|+.++..- ++. ...++.|...+..++..
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~~~~---------------- 200 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVPDLS---------------- 200 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSSCGG----------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhccch----------------
Confidence 33 357899999999999999999999999998532 221 23445555555433221
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1569 i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
.......+.++.++.+++..- .+..-......++|.|..++.+++++++..|+.+|+.++.
T Consensus 201 ------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 201 ------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp ------------------GSCHHHHHHHHHHHHHHHCCC-SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred ------------------hhhHHHHHHHHHHHHHHhhcc-cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 012345667778888888742 2222233456789999999999999999999999999876
Q ss_pred hhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHHHH
Q 000051 1649 GMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLF 1720 (2612)
Q Consensus 1649 ~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~~l 1720 (2612)
...+. .-..++|.|.+.+.+.. ..++..++.+++.++...... . . ...++.+...+.++++.+|+.++.++
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 32211 12457888888887654 557888888888875432211 1 1 34566677778889999999999999
Q ss_pred HHhhhhhccchhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHHHH
Q 000051 1721 KYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIRQS 1794 (2612)
Q Consensus 1721 ~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~-----~llp~L~~~l~d~~w~vR~~ 1794 (2612)
..++........... ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999865433222222 248899999999999999999999998877644333222 26788888888899999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHh
Q 000051 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1873 (2612)
Q Consensus 1795 a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~ 1873 (2612)
+++.+..++...... . ..+.. ..+.+..| .+..+.....+.+..|++.|..++..++.
T Consensus 421 ~L~aL~nil~~~~~~---------~-----~~~~~-~~~iee~g------gl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 421 ILDAISNIFQAAEKL---------G-----ETEKL-SIMIEECG------GLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHHHHHHHHHTT---------T-----CHHHH-HHHHHHTT------HHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhHhc---------c-----chHHH-HHHHHHcC------cHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 999999887542110 0 01111 11222222 23333344567889999999999987764
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.37 E-value=1.2e-10 Score=157.36 Aligned_cols=395 Identities=15% Similarity=0.163 Sum_probs=273.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhHHHHHHhhhcC-CChhhHHHHHHHHHHHHhhCchhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~Ll~~L~~-~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
..++.++..+..+++.++..|..+++.+.+.-.. +.+ ..++|.|++.|.. .+...+..|+.+|..++.+.+.+.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3467777888888899998888888887653211 122 5679999999964 557889999999999998776654
Q ss_pred hhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH------hhHHHHHHhhcCCCChhHHHHHHHHHhcccc
Q 000051 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDILLQTTFV 1566 (2612)
Q Consensus 1494 ~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i------~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~ 1566 (2612)
.... ...+|.|+.++.++++.||..|+++|+.++.. +++. ...++.|+..+.+++..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~--~~~~r~~i~~~g~i~~Ll~lL~~~~~~-------------- 219 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA--GSAFRDLVIKHGAIDPLLALLAVPDLS-------------- 219 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHTTCSSCGG--------------
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHcCCcHHHHHHHhccchh--------------
Confidence 3322 46889999999999999999999999999853 2222 23455555555443221
Q ss_pred ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000051 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2612)
Q Consensus 1567 ~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L 1646 (2612)
.......+.++..+.+++..- .+..-......++|.|..++.+++++++..|+.+|+.+
T Consensus 220 --------------------~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 220 --------------------TLACGYLRNLTWTLSNLCRNK-NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp --------------------GSCHHHHHHHHHHHHHHHCCC-TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred --------------------HhHHHHHHHHHHHHHHHHhcc-cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 012345667778888888642 22222334567899999999999999999999999998
Q ss_pred HhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChh--h-H-HhHhHHHHHhccCCChhhHhHHHH
Q 000051 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLT 1718 (2612)
Q Consensus 1647 ~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~l~~~~~~~~~~vR~~~~~ 1718 (2612)
+....+. ....++|.|+..+.+.+ ..++..++.+++.++.+.... . . ...++.+...+.++++.+|..++.
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 8643221 12457888888887654 557778888888876432211 1 1 346778888889999999999999
Q ss_pred HHHHhhhhhccchhhhH-HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhh-----hhHHHHhhccCCCchHHH
Q 000051 1719 LFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-----LLLPAVEDGIFNDNWRIR 1792 (2612)
Q Consensus 1719 ~l~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~-----~llp~L~~~l~d~~w~vR 1792 (2612)
+++.++..-.......+ ..++|.++..+.+.+..+|..|..++..+......+.+. ..+|.|.+.+...+.+++
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 99999864433222222 248899999999999999999999998877654333222 267888888889999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 000051 1793 QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIV 1872 (2612)
Q Consensus 1793 ~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~ 1872 (2612)
..+++.+..++...... . ..+.... +++..|. +..+.....+.+..|++.|..++..++
T Consensus 438 ~~~L~aL~nil~~~~~~---------~-----~~~~~~~-~iee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKL---------G-----ETEKLSI-MIEECGG------LDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTT---------T-----CHHHHHH-HHHHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhc---------c-----ChHHHHH-HHHHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999998887542110 0 0111112 2222221 222333456778999999999988776
Q ss_pred h
Q 000051 1873 A 1873 (2612)
Q Consensus 1873 ~ 1873 (2612)
.
T Consensus 497 ~ 497 (529)
T 3tpo_A 497 S 497 (529)
T ss_dssp -
T ss_pred C
Confidence 4
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.1e-11 Score=149.06 Aligned_cols=202 Identities=15% Similarity=0.210 Sum_probs=168.8
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc
Q 000051 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2612)
Q Consensus 1774 ~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~ 1853 (2612)
..+-|.+.+.+.+++|+.|.+++..+..++...++.. .. .+.+++..+...+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~----------~~------------------~~~~i~~~L~~~l 65 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE----------NG------------------EYGALVSALKKVI 65 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC----------CC------------------CCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC----------CC------------------CHHHHHHHHHHHh
Confidence 3455567788899999999999999999886532110 00 1123445555566
Q ss_pred c-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1854 S-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1854 ~-D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
. |.+..||..|+.+++.++...+..+.+|++.+++.++..+++++..+|..+..++..++...+ .+.++|.+...+
T Consensus 66 ~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l 142 (242)
T 2qk2_A 66 TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESL 142 (242)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 4 999999999999999999988888999999999999999999999999999999999987654 467888899999
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChh-hHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHH
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~-~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp 2006 (2612)
+++++.+|..++.+++.++..+++. ...++++.++|.+...+.|++++||.+|..+++.+...+|...+.++++
T Consensus 143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999988877655 3578899999999999999999999999999999999999866666544
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.36 E-value=2.4e-10 Score=155.68 Aligned_cols=478 Identities=13% Similarity=0.108 Sum_probs=301.8
Q ss_pred HHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1453 ~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --+++.+.+-++|+++.+|..|.++++.+..
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---- 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---- 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----
Confidence 34455667888888899999999988888888877666543 3345677778899999999999999999853
Q ss_pred hh-HhhHHHHHHhhc--CCCChhHH-HHHHHHHhccccccCChhhHh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1533 PE-IASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1533 ~~-i~~ivp~Ll~~l--~d~~~~~r-~al~~L~~~~~~~~i~~~~l~--~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
++ .+.++|.+.+.+ .|++.++| .|+-++... .. ..+.... .+++.+.+.+.|+++.++..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl--~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRL--YR-TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH--HH-HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--HH-hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 54 478899999999 89999998 344443321 11 1122222 5778888999999999999999999998874
Q ss_pred cCCCCcchhhHhhhHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHhhhCCC---CchhhHHHHHHHhccCC
Q 000051 1607 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 1670 (2612)
Q Consensus 1607 ~~~~~~l~~~l~~ll~~L~~~L~d~-------------~~~VR~~A~~aL~~L~~~~g~~---~~~~ll~~L~~~L~~~~ 1670 (2612)
+++.+.++.+.++..+.+++.++ +|-.+....+.++.++..-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 44456677777777777776432 5778888887777654321111 12334444444332111
Q ss_pred ---C-------HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1671 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1671 ---~-------~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
. ..+...++.++-.+. -..+........+...+.++++.+|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 012222222222211 11223455666677777788999999999999999876542 134455566
Q ss_pred HHHhhcC-CCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000051 1741 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2612)
Q Consensus 1741 ~ll~~L~-d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ 1819 (2612)
.++.++. |++..||..+++.+..++ .++.++.++.++.+.+.+.+...|..++..++.+....+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 7777888 999999998888766654 33456677888877777777778888888888876543211
Q ss_pred CCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCC-
Q 000051 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1898 (2612)
Q Consensus 1820 ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~- 1898 (2612)
.+.....+.+.+ .+....+...++..+..++...|. +++ ..+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll----------------~~~~~~v~~ev~~~l~~ii~~~~~-~~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLI----------------RIAGDYVSEEVWYRVIQIVINRDD-VQG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHH----------------HHHGGGSCSHHHHHHHHHHGGGCS-CHH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHH----------------HhhcccchHHHHHHHHHHHhCChh-HHH---HHHHHHHHHHcCccc
Confidence 011111111111 111112333444555555554443 222 12344555666543
Q ss_pred -HHHHHHHHHHHHHHHHHhchh--hhh-hHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh
Q 000051 1899 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2612)
Q Consensus 1899 -~~~R~~A~~aL~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L 1974 (2612)
...-..+++.+|+........ ..| .++..+...+.+.++.+|..++.++..+....+ + . .+.+...+....
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHh
Confidence 334455668888887665432 112 556667667778889999999999988765432 1 1 233333444445
Q ss_pred c--CCcHHHHHHHHHHHHH
Q 000051 1975 C--DSILEVRESAGLAFST 1991 (2612)
Q Consensus 1975 ~--D~d~~Vr~~A~~al~~ 1991 (2612)
. |.|.+||+.|...+.-
T Consensus 568 ~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 5 8899999999765433
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.35 E-value=2e-10 Score=154.08 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=239.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhh---CcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~ 1416 (2612)
+.+++.+. +++...+..|...+..+...- +...+...+++|.|.+++.+..++..+..|..++..++.+-...-..
T Consensus 60 ~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33344443 344566666666666655321 22233344788999999987667899999999999998654432222
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCCh-----hhHHHHHHHHHHHH
Q 000051 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2612)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~ia 1486 (2612)
.+. ..+|.++..+.++++.||+.|..++..++..-+.. .+ ...++.++..+...+. ...+.++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 232 47999999999999999999999999997643322 11 3467888888775443 34667788888888
Q ss_pred hhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000051 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2612)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2612)
... +..-......++|.|.+++.+.+++|+..|+++|..++..- ++... .+.
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--~~~~~---------------------~i~---- 271 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIE---------------------MVV---- 271 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHH---------------------HHH----
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--hhhHH---------------------HHH----
Confidence 653 22222334678899999999999999999999999987532 11000 000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
-..++|.|...+.+.+..++..++.++++++.. +...... .-...++.+..++.++++.+|..|+.+|+
T Consensus 272 --------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 272 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred --------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 012456666777777888999999999998753 2111111 11246677778888999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhH
Q 000051 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1645 ~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
.++....+. .-..++|.++..+.+.+ ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 997632221 12367888888887654 56888999999998876554432 346788999999999999999
Q ss_pred HHHHHHHhhhh
Q 000051 1716 YLTLFKYLPRS 1726 (2612)
Q Consensus 1716 ~~~~l~~L~~~ 1726 (2612)
++.++..+...
T Consensus 421 ~L~aL~nil~~ 431 (510)
T 3ul1_B 421 ILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.34 E-value=1.2e-09 Score=148.73 Aligned_cols=497 Identities=13% Similarity=0.078 Sum_probs=300.7
Q ss_pred hchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q 000051 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2612)
Q Consensus 1916 ~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~ 1995 (2612)
.|.++ +...+.+.+.+.+++...|..+..++..+... . .+.+--+++.+.+-+.|+++.+|..|..+++.+..
T Consensus 68 ~G~d~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~----~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~- 140 (621)
T 2vgl_A 68 LGHDI-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-N----SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS- 140 (621)
T ss_dssp HSCCC-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-C----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCC-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-C----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-
Confidence 35543 23444455577888888888887777765322 1 12335567778888888888888888877766521
Q ss_pred hChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 1996 AGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 1996 ~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
+ ...+.+
T Consensus 141 --~-----------------------------------------------------------------------e~~~~l 147 (621)
T 2vgl_A 141 --R-----------------------------------------------------------------------EMAEAF 147 (621)
T ss_dssp --H-----------------------------------------------------------------------HHHHHH
T ss_pred --H-----------------------------------------------------------------------HHHHHH
Confidence 1 112334
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhhhhcccccHH--HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH
Q 000051 2076 LPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVE--SLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 2151 (2612)
Q Consensus 2076 l~~Ll~~L--~~~~~~vr~~a~~al~~l~~~~~~~~l~--~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~ 2151 (2612)
+|.+.+.+ .+.++.||..|+-|+..+.... ++.+. .+++.+.+.+.|.|+.++.+|+.++..++...+..+.++.
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~ 226 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV 226 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 45566667 7889999999999999888743 33333 6777788888899999999999999999988777777778
Q ss_pred HHHHHHHHHHhcCC-------------ChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccc
Q 000051 2152 PNMISTLIVLLSDS-------------DSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILI 2218 (2612)
Q Consensus 2152 ~~il~~L~~ll~d~-------------d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l 2218 (2612)
+.+++.|..++.+. ++-.+......+..+......+....+...+.+.+....+.
T Consensus 227 ~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~------------ 294 (621)
T 2vgl_A 227 SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEP------------ 294 (621)
T ss_dssp HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC------------
Confidence 87777777665432 33344444444333321110011111111111111110000
Q ss_pred cCCCCCcCchhhHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHH
Q 000051 2219 PGFCLPKALQPLLPIFLQGLISGS--AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTL 2296 (2612)
Q Consensus 2219 ~g~~~p~~l~~ilp~l~~~L~~~~--~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L 2296 (2612)
|+.- ++.+.+ ..+-..++.++-.+ .+ ..++......+|.+.+.+. +.++|..++.+|
T Consensus 295 -----~ks~---------~l~~~n~~~aVl~ea~~~i~~l---~~---~~~~~~~~~~~L~~~L~~~-~~niry~aL~~l 353 (621)
T 2vgl_A 295 -----PKSK---------KVQHSNAKNAVLFEAISLIIHH---DS---EPNLLVRACNQLGQFLQHR-ETNLRYLALESM 353 (621)
T ss_dssp -----CSCS---------SHHHHHHHHHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHHHSSCS-CHHHHHHHHHHH
T ss_pred -----cccc---------cccccchHHHHHHHHHHHHHhc---CC---cHHHHHHHHHHHHHHhcCC-CcchHHHHHHHH
Confidence 0000 001111 12333333333332 22 2344556677788888754 789999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKG 2375 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~-d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~ 2375 (2612)
..++...+. .+++......|+.++. |++..+|..|...|..++. ..+++.++.+|...+...|.+.|..++.+++.
T Consensus 354 ~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~ 430 (621)
T 2vgl_A 354 CTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIVAEMLSYLETADYSIREEIVLKVAI 430 (621)
T ss_dssp HHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999865431 1234556778889999 9999999999999988854 35688999999999988899999999999999
Q ss_pred HHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHH
Q 000051 2376 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFAT 2455 (2612)
Q Consensus 2376 vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~ 2455 (2612)
+..+..... .-+.+.+++++...- +.+...+...+..+....|+-. ...+..+...+.++.. +...+.....
T Consensus 431 la~k~~~~~-~~~v~~Ll~ll~~~~----~~v~~ev~~~l~~ii~~~~~~~-~~~~~~l~~~l~~~~~--~~~li~~~~w 502 (621)
T 2vgl_A 431 LAEKYAVDY-TWYVDTILNLIRIAG----DYVSEEVWYRVIQIVINRDDVQ-GYAAKTVFEALQAPAC--HENLVKVGGY 502 (621)
T ss_dssp HHHHHCSST-HHHHHHHHHHHHHHG----GGSCSHHHHHHHHHHGGGCSCH-HHHHHHHHHHHTSSSC--CHHHHHHHHH
T ss_pred HHHhcCCcH-HHHHHHHHHHHHhhc----ccchHHHHHHHHHHHhCChhHH-HHHHHHHHHHHcCccc--hHHHHHHHHH
Confidence 887765443 445555555554322 1222223344444544444321 1122333333333332 2223322223
Q ss_pred HHhhCCccccCCch--hHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHh-hcC--CCCH
Q 000051 2456 FLRHNPSAISMSPL--FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVS-ALH--DDSS 2530 (2612)
Q Consensus 2456 ~l~~~p~~~~~~~~--~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~-~l~--~~~~ 2530 (2612)
++.+....+...+. ..+++..+.+.....++.+|...+.|+.++..... ...+.+..++. ... |.+.
T Consensus 503 ilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p--------~~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 503 ILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP--------EVKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp HHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHSSHHHHSCSSH
T ss_pred HhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh--------HHHHHHHHHHHHHhcCCCCCH
Confidence 44333333322111 12456677777777889999999999999876542 13344555554 233 8999
Q ss_pred HHHHHHHHHHHHHHh
Q 000051 2531 EVRRRALSALKSVAK 2545 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~ 2545 (2612)
|||..|..-.+-+..
T Consensus 575 evrdRA~~y~~Ll~~ 589 (621)
T 2vgl_A 575 ELQQRAVEYLRLSTV 589 (621)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999998877654
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.33 E-value=5e-10 Score=151.21 Aligned_cols=348 Identities=14% Similarity=0.126 Sum_probs=240.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000051 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2612)
Q Consensus 1340 ~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~ 1416 (2612)
+.+++.+. +++...+..|...+..+...-. ...+...++++.|.+.+....++..+..|+.++..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444443 3345566666666665553221 2223344788889998876667899999999999998654432222
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCCh-----hhHHHHHHHHHHHH
Q 000051 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2612)
Q Consensus 1417 ~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w-----~~r~~a~~~L~~ia 1486 (2612)
.+. ..+|.++.++.++++.||+.|..++..++..-+.. .+ ...+|.++..|...+. ...+.++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 58999999999999999999999999997643222 11 3467888888876543 34667788888887
Q ss_pred hhC-chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccc
Q 000051 1487 YCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2612)
Q Consensus 1487 ~~~-p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~ 1565 (2612)
... +..-......++|.|..++.+.+++|+..|+++|..++..-. +.. . .+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---~------------------~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---E------------------MVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---H------------------HHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---H------------------HHH----
Confidence 653 222223346788999999999999999999999999885321 100 0 000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcch-hhHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI-PYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1566 ~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~-~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
-..++|.|...+.+.+..++..++.++++++.. +..... -.-...++.|..++.++++.+|..|+.+|+
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 012456666777777888999999999998753 211111 112346788888999999999999999999
Q ss_pred HHHhhhCCC----CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhH-----HhHhHHHHHhccCCChhhHhH
Q 000051 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1645 ~L~~~~g~~----~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
.++...... .-..++|.++..+.+.. ..+|..++.+|+.++.....+.. ...++.+++.+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998642211 12357888888887664 56888999999998876554432 346888999999999999999
Q ss_pred HHHHHHHhhhh
Q 000051 1716 YLTLFKYLPRS 1726 (2612)
Q Consensus 1716 ~~~~l~~L~~~ 1726 (2612)
++.++..+...
T Consensus 440 ~L~aL~nil~~ 450 (529)
T 3tpo_A 440 ILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 54
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.32 E-value=4.1e-07 Score=128.64 Aligned_cols=384 Identities=11% Similarity=0.113 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHhc--hhhhhhHHH
Q 000051 1855 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLG--ERVLPSIIP 1926 (2612)
Q Consensus 1855 D~~~~VR~aA~~~l~~l~~~~~~-~l~~~l~~ll~~L~~~L~~~~-----~~~R~~A~~aL~~lv~~~~--~~~l~~llp 1926 (2612)
..+|..+++++=++++++..... .-.+++|.+++.|+.....+. ..++.....++|+..+.+. ..++..++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 45799999999999999765543 345799999999998776442 2233334456776655543 347888888
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-------HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChh
Q 000051 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2612)
Q Consensus 1927 ~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~-------l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~ 1999 (2612)
.+.+++.++++.++..||.++..+...++..- ..+|+..++..+.....+-.++-...-.+|++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88889999999999999999999988876542 24578888888888777766666666677788887776653
Q ss_pred h-hhhhHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCC-cc--hhHHHHHHHHHHHhCCChhhhHhhH
Q 000051 2000 A-IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LS--AFNAHALGALAEVAGPGLNFHLGTI 2075 (2612)
Q Consensus 2000 ~-~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~-~~--~~~~~al~~La~~~g~~l~~~l~~i 2075 (2612)
. ...++..++..+ ...+.+++...... + ..+.++. +. ....++..+++...|..+.+++..+
T Consensus 650 ~~~~~~i~~Lm~~~---------~~~w~~l~~~~~~~--~---~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i 715 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLP---------NQVWDSIIQQATKN--V---DILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 715 (1073)
T ss_dssp HHHHHHHHHHTHHH---------HHHHHHHHHHHHHC--G---GGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHHH---------HHHHHHHHHHhhcC--c---hhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHH
Confidence 2 222222222111 11222222110000 0 0001100 00 0122345566677899999999988
Q ss_pred HHHHHHhcCC-----------------CCHH------HHHHHHHHHHHhhhhccc------ccHHHHHHHHHhhcCCCCh
Q 000051 2076 LPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSELLKGVGDNQA 2126 (2612)
Q Consensus 2076 l~~Ll~~L~~-----------------~~~~------vr~~a~~al~~l~~~~~~------~~l~~ll~~Ll~~l~~~~~ 2126 (2612)
++.+++..+. ..+. +|...+..+...+...++ .-+++++..++.-.....|
T Consensus 716 ~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p 795 (1073)
T 3gjx_A 716 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVP 795 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 8877754211 1122 333333444444433221 1244555555554444455
Q ss_pred hHHH-HHHHHHHHHHHhcccchhccHHHHHHHHHH----Hhc---CCChhHHHHHHHHHHHHHhhcCccccccHHHHHHH
Q 000051 2127 SIRR-SSAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 2198 (2612)
Q Consensus 2127 ~vR~-~A~~~L~~l~~~~~~~~~~~~~~il~~L~~----ll~---d~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~ 2198 (2612)
..|. ..+.++..++...+..+.++++.++..++. +++ +..++.|..-..-+.++..++....
T Consensus 796 ~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l---------- 865 (1073)
T 3gjx_A 796 AAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF---------- 865 (1073)
T ss_dssp GGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGT----------
T ss_pred ccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHH----------
Confidence 5555 456666777888888888888888887764 344 3346777777776666665543221
Q ss_pred HHHhhhhhhhhhhcCCcccccCCCCC-cCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCh------hhhhhchhh
Q 000051 2199 AISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE------QSLKEFVIP 2271 (2612)
Q Consensus 2199 ~l~~~~~~~~~~~~~~~~~l~g~~~p-~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~------~~l~p~v~~ 2271 (2612)
+++| .....++..++-++.+...++-..+...+-+++..... .-++.|.-.
T Consensus 866 ----------------------~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~ 923 (1073)
T 3gjx_A 866 ----------------------LAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCD 923 (1073)
T ss_dssp ----------------------TTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------HcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 1122 22344666667777778888877777777777765331 113344445
Q ss_pred hhHHHHHHhcCCC
Q 000051 2272 ITGPLIRIIGDRF 2284 (2612)
Q Consensus 2272 i~~pLi~~l~~~~ 2284 (2612)
+..-.+.++.|..
T Consensus 924 ~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 924 ILQHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCch
Confidence 5555556666653
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1e-10 Score=139.99 Aligned_cols=206 Identities=15% Similarity=0.201 Sum_probs=169.2
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHH-HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc-
Q 000051 1776 LLPAVEDGIFNDNWRIRQSSVELLGD-LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR- 1853 (2612)
Q Consensus 1776 llp~L~~~l~d~~w~vR~~a~~ll~~-ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~- 1853 (2612)
+=+.+.+.+.+.+|+.|.++++.++. ++..++... ..+.+ +.+++..+...+
T Consensus 17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~--------~~~~~------------------~~~~~~~L~~~l~ 70 (249)
T 2qk1_A 17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLK--------STSQN------------------YSNLLGIYGHIIQ 70 (249)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBC--------CTTCC------------------CHHHHHHHHHHHH
T ss_pred CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccc--------cCccc------------------HHHHHHHHHHHhc
Confidence 33455667789999999999999888 764322110 00111 123445555566
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCh-hhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh----hhhhHHHH
Q 000051 1854 SDVSLSVRQAALHVWKTIVANTP-KTLK-EIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPI 1927 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~~-~~l~-~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~----~l~~llp~ 1927 (2612)
.|.+..||..|+.+++.++.+.+ ..|. +|...++|.++..+++....+|..+..++..++..+++. .++.+++.
T Consensus 71 ~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 71 KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 79999999999999999998877 7788 999999999999999999999999999999999987542 26688898
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhCh--hhHHHhH-hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhh
Q 000051 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGK--SQLLSFM-DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004 (2612)
Q Consensus 1928 L~~~L~d~~~~vR~~a~~aL~~li~~~~~--~~l~~~l-~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~i 2004 (2612)
+...+++++|.+|.+++.+|+.++...+. ..+.+++ +.++|.+.+.+.|++++||++|..+++.++..+|...+.++
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~ 230 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT 230 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999999999999999887664 5677899 99999999999999999999999999999999998777766
Q ss_pred HHH
Q 000051 2005 VPT 2007 (2612)
Q Consensus 2005 lp~ 2007 (2612)
++.
T Consensus 231 l~~ 233 (249)
T 2qk1_A 231 LEH 233 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.17 E-value=1.4e-06 Score=118.24 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=133.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
+.+..+|+.++.+||-+.-... ..+..+++.+....++-+|..+..+++.-....|. ...++..+-
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-----~~aIq~LL~ 584 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-----NSAVKRLLH 584 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-----HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHH
Confidence 4467889999999998753332 22344566666556888999998888855444443 122334444
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL-QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 2398 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l-~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~ 2398 (2612)
.+.+|+++.||..|+.+||.+..-.+ ..++.++..+ ++.++.+|..+..||+.+.. |... ..+++.|..
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn~~-----~~aid~L~~ 654 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--GKGL-----QSAIDVLDP 654 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SSCC-----HHHHHHHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CCCc-----HHHHHHHHH
Confidence 56678899999999999998743333 3467777765 45789999999999987753 3221 567778888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHHhhcCC--CCchhhHHHHHHHHHH
Q 000051 2399 LVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELLNLASS--PSWAARHGSVLVFATF 2456 (2612)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~---~~~~~l~~ll~~~~~--~~~~~~~~~~~~l~~~ 2456 (2612)
+..|.++.||..|+..||.++.-..+. .+..+++.+.....+ .+...+.++..+.+-+
T Consensus 655 L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 889999999999999999998766655 577777776654432 3444555555555433
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.16 E-value=1.6e-09 Score=133.50 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
.++.|.+.+.++ ++.+|..|+.+++.+. + ...++.++..+.|+++.||..|..++..+.. ....+..
T Consensus 24 ~i~~L~~~L~~~-~~~vr~~A~~~L~~~~---~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDH-NSLKRISSARVLQLRG---G-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCS-SHHHHHHHHHHHHHHC---C-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcC-CHHHHHHHHHHHHccC---C-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 345566677766 7888888888777654 1 3567778888888888999888888876632 1223444
Q ss_pred HHHHHHh-hhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1459 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1459 ilp~Ll~-~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
+++.+.+ .+.++++.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..|+.+|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 5555553 35677888888888888887754432 224567778888888888888888888887654 23
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh
Q 000051 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
.+|.|.+.+.|++..+| .++..+.... . .-+.++|.+...+.|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININK---Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHT---C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhc---c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 56777777777777776 4555554311 0 012456777777777778888888877776542
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCC
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~ 1671 (2612)
+..++.+...+.|++ ||..|+.+++.+.. +..+|.|.+.+.++.+
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSC
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCC
Confidence 125566666666643 77777777776532 3566777666655443
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.15 E-value=1.2e-09 Score=150.23 Aligned_cols=285 Identities=16% Similarity=0.274 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHhChhh-H-HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--chhhhHHhHHHHHHhhcCCC
Q 000051 1674 ERSGAAQGLSEVLAALGTVY-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2612)
Q Consensus 1674 ~R~~aa~~L~~i~~~~g~~~-l-~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~--~f~p~l~~iip~ll~~L~d~ 1749 (2612)
.+..++..++.++..-+... . ..++..+.+.+.+.... ++++.++..++..+|. .++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45667777777765432221 1 35666777777666444 9999999999988864 78999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHH
Q 000051 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2612)
Q Consensus 1750 ~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~-~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~ 1828 (2612)
...||.+|..+...++..+++.++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999999655 69999999999999864321
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000051 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2612)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~-~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~ 1907 (2612)
..+. ..+.++++.+-.+..|...+|..+|..++..++.... ..+.+++ |.|++++.+++.. -.
T Consensus 167 --~~~~-----~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~----~~~~~~~~~p~~~-----~~ 230 (986)
T 2iw3_A 167 --DQVA-----LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFI----PSLIQCIADPTEV-----PE 230 (986)
T ss_dssp --HHHH-----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGH----HHHHHHHHCTTHH-----HH
T ss_pred --HHHH-----HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhH----HHHHHHhcChhhh-----HH
Confidence 1122 2446788888889999999999999999999887443 3444554 4566667777542 22
Q ss_pred HHHHH-----HHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhC-hhhHHHhHhHHHHHHHHHhc-CCcHH
Q 000051 1908 ALGEL-----VRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALC-DSILE 1980 (2612)
Q Consensus 1908 aL~~l-----v~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~-~~~l~~~l~~ll~~l~~~L~-D~d~~ 1980 (2612)
|+..+ +..+....+.-+.|+|.++|+++...+++.++..+..++.-.. +....+|++.++|.+.+... -.+|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 33222 2223445688999999999999998888888888888766553 56678999999999998775 46999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000051 1981 VRESAGLAFSTLFKSAG 1997 (2612)
Q Consensus 1981 Vr~~A~~al~~l~~~~g 1997 (2612)
+|+.|.+|+..+.+..+
T Consensus 311 ~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999977644
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=3.4e-09 Score=130.69 Aligned_cols=250 Identities=14% Similarity=0.099 Sum_probs=185.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
.++.++..+.|+++.||..|..++..+. -...+|.++..+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 4678888999999999999999988773 2457888899999999999999999998875321 123456
Q ss_pred HHHHh-hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000051 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1501 vp~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
++.+. .+++|+++.||..|+++|+.++.... ......+|.|...+.|++..+| .++..+... .. ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~------~~---~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVI------ND---KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc------CC---HHHH
Confidence 66655 35789999999999999999985431 2235688999999999999888 567776642 11 2357
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~l 1658 (2612)
|.|...+.++++.+|..++..++.+... . +..++.+...+.|+++.||..|+.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYD--N--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCC--C--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccC--c--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 8888889999999999999999887421 1 347788888999999999999999998864 2456
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccC-CChhhHhHHHHH
Q 000051 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTL 1719 (2612)
Q Consensus 1659 l~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~-~~~~vR~~~~~~ 1719 (2612)
+|.+...+.+++ +|..++.+++.+ |. +..+|.+.+.+.+ .++.++..++..
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 777777776643 677777777765 33 3566777776654 455555444443
No 60
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.11 E-value=5.5e-06 Score=112.56 Aligned_cols=261 Identities=14% Similarity=0.146 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhch-hhhhhHHHHHhhhcCCCC
Q 000051 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~-~~l~~llp~L~~~L~d~~ 1936 (2612)
..+|..|+-.+|-+..++.+ +.+.+.|...+.+.+...|..|+.+||.+.-..|. .+...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888888888887655543 12344445555666777888899999877544443 24555555544 3556
Q ss_pred hhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCC
Q 000051 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD 2015 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L-~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~ 2015 (2612)
..+|..++.+||.+. .+.. ..++.+.+.+ .+.++.+|..++-+++--+...|.. ..+..|+..+.++
T Consensus 522 e~vrR~aalgLGll~--~g~~-------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d 589 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ-------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG-------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhh--CCCh-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccC
Confidence 789999999999762 2221 1223333333 3789999999888776544333331 2233333322211
Q ss_pred CcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHh-CCChhhhHhhHHHHHHHhc-CCCCHHHHHH
Q 000051 2016 QTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSL 2093 (2612)
Q Consensus 2016 ~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l~~il~~Ll~~L-~~~~~~vr~~ 2093 (2612)
.. ...+..|+-+|+-+. |.. ..++.+++.+ .+.++.+|..
T Consensus 590 ~~--------------------------------d~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 590 SN--------------------------------DDVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp SC--------------------------------HHHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHHHH
T ss_pred Cc--------------------------------HHHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHHHH
Confidence 11 011223444555442 331 3455566654 5678999999
Q ss_pred HHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcC--CChhHHH
Q 000051 2094 AKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVA 2171 (2612)
Q Consensus 2094 a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d--~d~~V~~ 2171 (2612)
+..+++.+....+ ...++..|.....|.+..||++|+.++|.+.........+.+..+++.|.....| .|..++-
T Consensus 632 AalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~f 708 (963)
T 4ady_A 632 TAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKF 708 (963)
T ss_dssp HHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHH
Confidence 9999998754322 3566777777788999999999999999998887777778899999999998876 4566666
Q ss_pred HHHHHHHHH
Q 000051 2172 AAWEALSRV 2180 (2612)
Q Consensus 2172 ~a~~aL~~l 2180 (2612)
.+.-|.+-+
T Consensus 709 ga~iAqGll 717 (963)
T 4ady_A 709 GACVAQGIM 717 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 61
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.08 E-value=1.1e-07 Score=139.41 Aligned_cols=538 Identities=13% Similarity=0.105 Sum_probs=295.3
Q ss_pred HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCcchhhhhhhheeecCCchHHHHHHH--------HHHHhcCC
Q 000051 1057 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGY 1126 (2612)
Q Consensus 1057 ~~~~~ll~~~~s~--~~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--------~~w~~~~~ 1126 (2612)
+++.++|+.+++| |+.+|.+|++.|++.... |........+. ...+.+..+|.+|. ..|...+.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 3588889999998 778899999999876311 11111111111 12344566666654 35654332
Q ss_pred CCCCCh-HhHHHhhcC-------CCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000051 1127 DFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2612)
Q Consensus 1127 ~~~~~~-~~Ll~~l~~-------~~~~vR~~aa~ala~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2612)
+-.+.+ ..+++.+.+ ....+|++++++++.++. .||+.|++++..+.+.... +...+.++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~ 153 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELV 153 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHH
Confidence 222235 566766542 468999999999999875 6888888888888876431 12457788
Q ss_pred HHHHHHhhhhhCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHhccC----------C
Q 000051 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK----------A 1267 (2612)
Q Consensus 1198 ~~al~~~~~~~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~~~Llp~~~~~l~~~----------~ 1267 (2612)
..+|..+++.+... .+... .|..-+. ..+. +.++.+++.+...+... .
T Consensus 154 L~iL~~L~Eev~~~--------------~~~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 154 MFILLRLAEDVVTF--------------QTLPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp HHHHHHHHHHHHTS--------------CCSCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHccc--------------cchHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88888887632110 11111 1211111 1111 11333444433333210 0
Q ss_pred CC---hHHhhhHHhHHHHHHHHHhhhhccC--CcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcc--h------
Q 000051 1268 SD---EEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E------ 1334 (2612)
Q Consensus 1268 ~~---~~~~d~vr~~~i~~l~~La~~l~~~--~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~--~------ 1334 (2612)
.+ .+....++..+...+.....+.+.. ...-..+++.+...+.+ +++|.++.+||..++..... +
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~ 289 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMV 289 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGG
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHH
Confidence 00 0112233333333333222221100 00002366667766654 57899999999988864321 1
Q ss_pred -h-HHHHHHHHHHhh--c-----CCChHHHHHHHHHHHHHHhhh-----------CcchhhhhcHHHHHHHHHhCCCCHH
Q 000051 1335 -A-PTLVSRLLDQLM--K-----SDKYGERRGAAFGLAGVVKGF-----------GISSLKKYGIAATLREGLADRNSAK 1394 (2612)
Q Consensus 1335 -~-~~li~~ll~~L~--~-----~~~~~~R~~Aa~~L~~l~~~l-----------g~~~l~~~~i~~~L~~~i~~~~~~~ 1394 (2612)
. ...+..+++.+. + .+++..++.-+..+..+...+ ....+ ..+++.+..+..+. +..
T Consensus 290 ~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l~~lL~~t~~~-~~~ 366 (1204)
T 3a6p_A 290 LFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYLESFLAFTTHP-SQF 366 (1204)
T ss_dssp GGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHHHHHHHHHTSS-CHH
T ss_pred HHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHHHHHHHHHhCc-cHH
Confidence 0 122334455432 1 112344444444444333111 11112 25778888888776 555
Q ss_pred HHHHHHHHHHHHHHHh----cccchhhHHHHHHHH---HHHcCCCC------------------------HHHHHHHHHH
Q 000051 1395 RREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREAAECA 1443 (2612)
Q Consensus 1395 ~R~~Al~al~~L~~~~----~~~~~~~v~~ilp~l---l~~l~D~~------------------------~~VR~aa~~a 1443 (2612)
+-..++.....+.+.. ...+.+++.++++.+ +..+.-+. ...|+.....
T Consensus 367 vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~ 446 (1204)
T 3a6p_A 367 LRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEV 446 (1204)
T ss_dssp HHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 5545554444444332 123567788888887 44432111 1346667777
Q ss_pred HHHHHHhhcHHhHHhHHHHHHhhhcC-------------------------CChhhHHHHHHHHHHHHhhCchhh-hhhh
Q 000051 1444 ARAMMSQLSAQGVKLVLPSLLKGLED-------------------------KAWRTKQSSVQLLGAMAYCAPQQL-SQCL 1497 (2612)
Q Consensus 1444 l~~i~~~l~~~~v~~ilp~Ll~~L~~-------------------------~~w~~r~~a~~~L~~ia~~~p~~l-~~~L 1497 (2612)
++.++...+..++..+.+.+.+.+.+ ..|....+....++++++...+.. ..++
T Consensus 447 l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l 526 (1204)
T 3a6p_A 447 MRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEI 526 (1204)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 88887777777776666666443321 235555666666676665442211 1233
Q ss_pred c-hhHHHHhhhh---cCCCHHHHHHHHHHHHHHHhhcCC-h-hHhhHHHHHHhhcCCCCh-hHHHHHHHHHhccccccCC
Q 000051 1498 P-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1498 ~-~ivp~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~ivp~Ll~~l~d~~~-~~r~al~~L~~~~~~~~i~ 1570 (2612)
+ .++|.+++.+ +..+|.+|..++.+++.+...+.. | .+..+++.++..+.++.. ..+ .
T Consensus 527 ~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~---------------~ 591 (1204)
T 3a6p_A 527 PVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK---------------A 591 (1204)
T ss_dssp CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT---------------S
T ss_pred cHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc---------------c
Confidence 3 2455555543 446899999999999999887652 2 345555555554433100 000 0
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCC---HHHHHHHHHHHHHHH
Q 000051 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~---~~VR~~A~~aL~~L~ 1647 (2612)
. -.+.+.++|..|+.++..++..+ ++.+.||++.+...+..++.... ..-+..-..+++.++
T Consensus 592 ~-------------~~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 592 P-------------RTRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred c-------------ccHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 0 00012478999999999999864 35789999999999998887443 666777788888886
Q ss_pred hhhCCC-----CchhhHHHHHHHhcc
Q 000051 1648 RGMGEE-----NFPDLVSWLLDALKS 1668 (2612)
Q Consensus 1648 ~~~g~~-----~~~~ll~~L~~~L~~ 1668 (2612)
..+++. ++..+++.+.+.+.+
T Consensus 657 ~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 657 NQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 655543 356666666666654
No 62
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.00 E-value=7.9e-10 Score=152.75 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=119.3
Q ss_pred hhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1922 ~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
..++|++.. |++++++.|..+|.+|+.++.......+..+...+.+.+..++.|++.+||.+|+.+|..++...|.+..
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456776654 8899999999999999999754322222222234555667789999999999999999999888777655
Q ss_pred hh-----hHHHHHHhccCCCcchHHHHHHHHHhh------hcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhh
Q 000051 2002 DE-----IVPTLLHALEDDQTSDTALDGLKQILS------VRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNF 2070 (2612)
Q Consensus 2002 ~~-----ilp~Ll~~L~~~~~~~~al~~L~~il~------~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~ 2070 (2612)
+. ++|.|+..|+.... .+..... ......++.+ ......++.+|++.....+..
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~lL~~L~e~s~~~~~~ 177 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLE------TLTTSEPPFSKLLKAQQRLVWDI---------TGSLLVLIGLLALARDEIHEA 177 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH------HHHCBTTBGGGSCHHHHHHHHHH---------HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHH------HHhhhccccccccHHHHHHHHHH---------HHHHHHHHHHHHhCCHHHHHH
Confidence 44 67777766643111 0000000 0000000000 001223445555533322222
Q ss_pred hH-hhHHHHHHHhcC---CCCHHHHHHHHHHHHHhhhhcc-------cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 000051 2071 HL-GTILPALLSAMG---DDDMDVQSLAKEAAETVTLVID-------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYF 2139 (2612)
Q Consensus 2071 ~l-~~il~~Ll~~L~---~~~~~vr~~a~~al~~l~~~~~-------~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l 2139 (2612)
.. ...+|.++..+. ....+++..+..|+..+..... .++...++..++...++.++. |..++..+.++
T Consensus 178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhH
Confidence 11 245566666552 2346789999999888765321 122233455555555555444 55555555555
Q ss_pred H-HhcccchhccHH
Q 000051 2140 Y-KNSKLYLVDEAP 2152 (2612)
Q Consensus 2140 ~-~~~~~~~~~~~~ 2152 (2612)
+ .....+++.+..
T Consensus 257 ~~~~~~~d~s~~~~ 270 (684)
T 4gmo_A 257 FTSLQWMDHSPGKD 270 (684)
T ss_dssp HHHHTCBTTBCCGG
T ss_pred hhhhhhhhcchhhH
Confidence 4 444445555443
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.97 E-value=1.2e-08 Score=118.65 Aligned_cols=189 Identities=19% Similarity=0.211 Sum_probs=154.1
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh
Q 000051 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2612)
Q Consensus 1414 ~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l 1493 (2612)
+.++-....+.++..+.|+++.+|..|..++..+.. ...+|.+++.+.++++.+|..++.+|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 445556788999999999999999999999887632 3567888899999999999999999988742
Q ss_pred hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChh
Q 000051 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2612)
Q Consensus 1494 ~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~ 1572 (2612)
+..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..+.... .
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT------C-
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------C-
Confidence 3567888899999999999999999998864 2467888888899998888 5666665421 1
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1573 ~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
...++.|...+.|.++.+|..++.+++.+.. +..++.+..++.|+++.||..|..+|+.+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2467788889999999999999999998732 347778888889999999999999998753
No 64
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.94 E-value=1.7e-08 Score=118.43 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=134.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhch
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ 1499 (2612)
..++.++..+.|+++.+|..+..++..+.. ...+|.|++.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 567888888999999999999888877622 3567888888888899999999999988742 45
Q ss_pred hHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000051 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2612)
Q Consensus 1500 ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~ii 1578 (2612)
.++.+.+.++|+++.||..|+.+|+.++. ...++.|.+.+.|++..+| .++..+.... . ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~---~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------D---ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------C---GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------C---HHHH
Confidence 67778888999999999999999988864 2456777777777777776 4555554311 1 2345
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 000051 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2612)
Q Consensus 1579 p~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~ 1650 (2612)
+.|.+.++|.++.+|..+..+++.+.. +..++.+...+.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788777777776632 235666677777777788888877777765543
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=9e-06 Score=108.47 Aligned_cols=554 Identities=13% Similarity=0.100 Sum_probs=296.5
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh--
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~-- 1455 (2612)
.++..++..+....+.+ ..--+-++-.+...++-.|.. +.-++..+ ++.-..++||..+.-+........+...
T Consensus 132 ~ll~~~~~~~~~~~~~~-~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTH-VTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 56666666666443443 334455555566666644444 32233222 2355677899888777666655544332
Q ss_pred -HHhHHHHHH-hhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh--chhHHHHhhhh-cCCCHHHHHHHHHHHHHHHhhc
Q 000051 1456 -VKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVI 1530 (2612)
Q Consensus 1456 -v~~ilp~Ll-~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L--~~ivp~L~~~L-~D~~~~VR~aA~~aL~~l~~~~ 1530 (2612)
+..++..++ +.=.+..-..-..++.++..+.--.|+....-+ ....+.+.+.+ ......+..++.+.|...+..-
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 233333222 100111122233344444444444444332221 34455555555 3345566666666665554321
Q ss_pred CCh--hHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhcc
Q 000051 1531 KNP--EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2612)
Q Consensus 1531 ~~~--~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~ 1607 (2612)
... -.+..++.|...+.+ +.+| .|+-.|.+..........+...+.+.+.+.+.+...+.+..|.+.|..+.-.
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 111 126677888877765 3455 3444444432222223345567888999999887766688888888776431
Q ss_pred CCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCC-----CchhhHHHHHHHh-ccCCCHHHHHHHHH
Q 000051 1608 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDAL-KSDNSNVERSGAAQ 1680 (2612)
Q Consensus 1608 ~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~-----~~~~ll~~L~~~L-~~~~~~~~R~~aa~ 1680 (2612)
.+.++....-+.+++.|.+++.+ .+..+-..+...|+.+....... .+..+.++.-... ..+...... ....
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11112122224567778888874 56678888888888887754421 1222222111100 000000000 0001
Q ss_pred HHHH-HHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChh---HH
Q 000051 1681 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENES---VR 1754 (2612)
Q Consensus 1681 ~L~~-i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~---VR 1754 (2612)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..-. ....+ ...+++++..+....+. +|
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 1111 1111111 3478888898999999999999999999975422 22222 24788889888876543 78
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHH
Q 000051 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2612)
Q Consensus 1755 ~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~ 1834 (2612)
..|..|+..+.....+. +. +... .. .+ .++.++.-+.... +.+. ..
T Consensus 519 ~~AA~ALArLlis~np~--------~~---f~~~-~~-~~---aI~pLv~LL~~~~-------~~~~-~~---------- 564 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPG--------LI---FKKY-SA-LN---AIPFLFELLPRST-------PVDD-NP---------- 564 (778)
T ss_dssp HHHHHHHHHHHHTSCHH--------HH---SSSS-CS-TT---HHHHHHHTSCCSS-------SCSS-CC----------
T ss_pred HHHHHHHHHHHhcCCHH--------HH---cCCC-cc-cc---chHHHHHHcCCCC-------Cccc-cc----------
Confidence 88888888766332211 10 0000 00 01 2222221111000 0000 00
Q ss_pred HHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCh---hhH-HHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000051 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2612)
Q Consensus 1835 ~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~---~~l-~~~l~--~ll~~L~~~L~~~~~~~R~~A~~a 1908 (2612)
++ ........-+..|+.++..++.... +.. ..++. ..++.+...+.+.+..+|..|+++
T Consensus 565 --------------l~-~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 565 --------------LH-NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ------------------CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred --------------cc-ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 00 0001112234567777777777541 222 33454 478889999999999999999999
Q ss_pred HHHHHHHhch---hhh----hh---HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhH--hHHHHHHHHHhcC
Q 000051 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2612)
Q Consensus 1909 L~~lv~~~~~---~~l----~~---llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l--~~ll~~l~~~L~D 1976 (2612)
++.++..... .+. +. =++.|...++..+.++|.+++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999864321 221 11 2678888888999999999999998864322 22112222 3567777778877
Q ss_pred --CcHHHHHHHHHHHHHHHH
Q 000051 1977 --SILEVRESAGLAFSTLFK 1994 (2612)
Q Consensus 1977 --~d~~Vr~~A~~al~~l~~ 1994 (2612)
+++++|..++.++..|..
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999876
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=5.7e-06 Score=110.36 Aligned_cols=475 Identities=13% Similarity=0.101 Sum_probs=285.6
Q ss_pred HHHhcCCCCCCChHhHHHhhc--CCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHH
Q 000051 1120 IWDRYGYDFGTDYSGLFKALS--HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197 (2612)
Q Consensus 1120 ~w~~~~~~~~~~~~~Ll~~l~--~~~~~vR~~aa~ala~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~ 1197 (2612)
+.....+.+++ +.-|++++. .....+|..+--+++...+.+++.+.+.+....+...-.... +..-.--..+
T Consensus 159 l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~-----~~~~~~~~~~ 232 (778)
T 3opb_A 159 LLNKFKYNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEI-----DVGNDPLSII 232 (778)
T ss_dssp HHHHSCCCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSSCHHHHH
T ss_pred HHHHcCccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhcc-----CCCCccHHHH
Confidence 34445566654 666777665 578899999999998888888877776666665533211100 0001122333
Q ss_pred HHHHHHhhhh--------hCCCChhHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcchh----hhhHHHHHHHhcc
Q 000051 1198 ALALHSAADV--------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNV----SLLFPIFENYLNK 1265 (2612)
Q Consensus 1198 ~~al~~~~~~--------~~~~~~~~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~~----~~Llp~~~~~l~~ 1265 (2612)
..++..+.+. |-.+.. ...+.......++..+..++++.+...-. ++... +..+|.+++.+..
T Consensus 233 ~~~l~~lfPi~p~~~s~lfl~e~~---~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~ 307 (778)
T 3opb_A 233 VKTLSELYPSLTTLCSEIFLTKGL---SKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHTTTTHHHHHHHHSTTTH---HHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCHHHHHHHHccccH---HHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc
Confidence 3344444332 222222 22222222234566666666666553211 12222 3334444444432
Q ss_pred CCCChHHhhhHHhHHHHHHHHHhhhhccCCcchHhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhh--hcch---hHHHHH
Q 000051 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--MQDE---APTLVS 1340 (2612)
Q Consensus 1266 ~~~~~~~~d~vr~~~i~~l~~La~~l~~~~~~~~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~--~~~~---~~~li~ 1340 (2612)
+.+|.-+...+..+...-...+..+..+.+.+.+.|.++..+.|..+.+.|..+-.. +++. ....+.
T Consensus 308 --------~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~ 379 (778)
T 3opb_A 308 --------EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTE 379 (778)
T ss_dssp --------GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHH
Confidence 345655555555555433333456778999999999997766677778877655321 1121 144566
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCc----------------------------------------chhhhhcHH
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGI----------------------------------------SSLKKYGIA 1380 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~----------------------------------------~~l~~~~i~ 1380 (2612)
.+++.+....+...-.++...|+.+...... ..+...+++
T Consensus 380 ~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI 459 (778)
T 3opb_A 380 ILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI 459 (778)
T ss_dssp HHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH
Confidence 7777766433445566666666666553221 001112567
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHhhcHHh
Q 000051 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVA---VREAAECAARAMMSQLSAQG 1455 (2612)
Q Consensus 1381 ~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D~~~~---VR~aa~~al~~i~~~l~~~~ 1455 (2612)
+.|...+.+. ++..|+.|..++..++.. . .....+. ..++.++..+.+.... +|..|..++..+.-...+..
T Consensus 460 p~Lv~Ll~S~-s~~~re~A~~aL~nLS~d-~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 460 SFLKREMHNL-SPNCKQQVVRIIYNITRS-K-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHcCC-H-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 7777777776 789999999999999854 2 2233332 5788999998876544 89999999888875443332
Q ss_pred ------HHhHHHHHHhhhcC-CCh-------------hhHHHHHHHHHHHHhhCc---hhhhh-hhc--hhHHHHhhhhc
Q 000051 1456 ------VKLVLPSLLKGLED-KAW-------------RTKQSSVQLLGAMAYCAP---QQLSQ-CLP--KIVPKLTEVLT 1509 (2612)
Q Consensus 1456 ------v~~ilp~Ll~~L~~-~~w-------------~~r~~a~~~L~~ia~~~p---~~l~~-~L~--~ivp~L~~~L~ 1509 (2612)
....+|+|++.|.. ..- ..+..|+.+|..++.... +.... -+. ..+|.+..++.
T Consensus 537 ~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 537 IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 13678999988872 211 237789999999998642 22222 232 58899999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCChhH--hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000051 1510 DTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2612)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~i--~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d 1587 (2612)
+.+..||.+|++++.+++.. ++. +.+ ... ..+.-..-++.+...++.
T Consensus 617 s~n~~VrrAA~elI~NL~~~---~e~i~~k~---------------------------~~~-~~~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 617 DENVPLQRSTLELISNMMSH---PLTIAAKF---------------------------FNL-ENPQSLRNFNILVKLLQL 665 (778)
T ss_dssp CSSHHHHHHHHHHHHHHHTS---GGGTGGGT---------------------------SCC-SSHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHHhCC---cHHHHHHH---------------------------Hhh-cCchhhccHHHHHHHHcC
Confidence 99999999999999999862 221 111 000 001111124566677777
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 000051 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 1649 (2612)
Q Consensus 1588 ~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d--~~~~VR~~A~~aL~~L~~~ 1649 (2612)
.+.++|+.|+.++.++... ++......+ +..++.+..++.+ +++++|..++.++..++..
T Consensus 666 ~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 8899999999999988642 211111111 2466777777777 8999999999999999973
No 67
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.83 E-value=1.8e-07 Score=113.00 Aligned_cols=237 Identities=19% Similarity=0.124 Sum_probs=175.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH---
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--- 1454 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--- 1454 (2612)
.++.+.+.+.+. ++..|..|+.++..++...+......+. ..+|.++..+.++++.+|..+..++..+...-+..
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456677778877 6999999999999998654422222222 58999999999999999999999999987542222
Q ss_pred hH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1455 ~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
.+ ...+|.++..+.+++..++..++.+|+.++...++..... -...+|.+.+++.++++.+|..|+.+|+.++..-
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 11 3578999999999999999999999999997555432221 2468899999999999999999999999997531
Q ss_pred hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
+.... .+. -...+|.+...+.+.++.+|..++.++++++.. ++..
T Consensus 160 ~~~~~---------------------~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 204 (252)
T 4hxt_A 160 DEAIK---------------------AIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSA 204 (252)
T ss_dssp HHHHH---------------------HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHH
T ss_pred HHHHH---------------------HHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHH
Confidence 11100 000 013566777777777889999999999998862 2111
Q ss_pred chhh-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1613 l~~~-l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
.... -..+++.+.+++.++++.+|..|..+|+.+....+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 2357899999999999999999999999999865543
No 68
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.82 E-value=8.6e-07 Score=124.50 Aligned_cols=770 Identities=13% Similarity=0.082 Sum_probs=381.9
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhc----CCChhhHHHHHHHHH--HH
Q 000051 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----DKAWRTKQSSVQLLG--AM 1485 (2612)
Q Consensus 1412 ~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~----~~~w~~r~~a~~~L~--~i 1485 (2612)
+.+.+.-..++..++......-+.||..|..++..++..++. ....++|.+++.|+ +.+...-+||+.+|. .+
T Consensus 125 r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~ 203 (997)
T 1vsy_5 125 RKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVG-SYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKI 203 (997)
T ss_dssp BCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHH
T ss_pred cCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhh
Confidence 346666678888888888889999999999999999987743 34677788877764 456677788888774 44
Q ss_pred HhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH-----hhHHHHHHhhcCCCChhHHHHHHHH
Q 000051 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2612)
Q Consensus 1486 a~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~ivp~Ll~~l~d~~~~~r~al~~L 1560 (2612)
..... .-...++.+++.++++....+|.|+..+..+...+......|.. ..++ ..+..|++.+..+++..
T Consensus 204 ~~~~~-~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~~~~~ 278 (997)
T 1vsy_5 204 HRKLM-TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQVEAV 278 (997)
T ss_dssp HHHGG-GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSHHHHH
T ss_pred hhHHh-cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHHHHHH
Confidence 33222 12345678889999988777899998888777777765543311 1111 12222222111111110
Q ss_pred Hhc--cccccCChhhHhhHHHHHHHhh-cCCC--HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHH
Q 000051 1561 LQT--TFVNTVDAPSLALLVPIVHRGL-RERS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2612)
Q Consensus 1561 ~~~--~~~~~i~~~~l~~iip~L~~~l-~d~s--~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~V 1635 (2612)
-.. .-... -...+..+...+.... ++.. |+....++..+-++..... .|+-+.++..+.+.+.++.|.+
T Consensus 279 ~~~~~~~r~~-~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d-----~~~~~~~v~~~~~~l~~dhp~~ 352 (997)
T 1vsy_5 279 KLAKKKKREY-YLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE-----SKPDKRAVFSIISQISTKHPEI 352 (997)
T ss_dssp HHHTTHHHHH-HHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS-----CCCCHHHHHHHHGGGGGCCHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHhhcCCCHHH
Confidence 000 00000 0001111222222222 2334 7777666666444443211 3344567777777777777888
Q ss_pred HHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhH
Q 000051 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2612)
Q Consensus 1636 R~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~ 1715 (2612)
|..|..++..+....... . . ...+. . . .++. ...|.-+....++++...+.
T Consensus 353 R~~a~~~l~~il~~~k~~---~----~---~~~d~-~-----------~---~~~~----~~~p~~~~l~~~~~~~~~~~ 403 (997)
T 1vsy_5 353 IHLVVKSLLSTCNKIISL---S----D---YEYDI-T-----------R---AYKN----EFNPSFVEILDTSTTSFPKT 403 (997)
T ss_dssp HHHHHHHHTHHHHHHHHH---H----H---HTTCG-G-----------G---GSSS----SCCCTTEEEEESCSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhh---h----c---CCCcH-H-----------H---hhcc----ccCCCCceecCCCCccHHHH
Confidence 877777777666543210 0 0 00000 0 0 0000 00000000000011111111
Q ss_pred HHHHHHH------hh--h-h-----hccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHh
Q 000051 1716 YLTLFKY------LP--R-S-----LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2612)
Q Consensus 1716 ~~~~l~~------L~--~-~-----~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~ 1781 (2612)
....+.. +. . . -|+.+.-|-+.- | .+ +-++ .-..+.+.++ +...++-++.+...+.
T Consensus 404 ~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~-~----~l-~~~~-~e~~i~~~f~---~~~~~~~~~~l~~~l~ 473 (997)
T 1vsy_5 404 FTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKA-L----KL-NLRE-NELEVLKTAG---HLLTREFLRDVTMNLV 473 (997)
T ss_dssp HHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTC-C----CC-CCCH-HHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCC-C----CC-CCCH-HHHHHHHHHH---hhcCHHHHHHHHHHHH
Confidence 1111000 00 0 0 011111111111 1 11 1111 1111111111 1111122222222211
Q ss_pred hccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHH
Q 000051 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2612)
Q Consensus 1782 ~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR 1861 (2612)
+. .+.+.+.+..-+.++..+..-+ ....|...++.+.+.+-....|.+..-.
T Consensus 474 qe-~~~~~~F~~~~v~l~k~lf~l~---------------------------~rn~~~~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 474 QD-NETRGVFSSGNVSFFSLVILLI---------------------------SSGFCELNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp HT-TTTTCCCCHHHHHHHHHHHHHH---------------------------TTTTCCCCGGGHHHHHHHTCCSSCHHHH
T ss_pred hh-ccccCccccchHHHHHHHHHHH---------------------------hcccchhhHHHHHHHHHHHhccccHHHH
Confidence 11 1111111122222222221110 0112333444444444444566777788
Q ss_pred HHHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhh--h-c-
Q 000051 1862 QAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR--G-L- 1932 (2612)
Q Consensus 1862 ~aA~~~l~~l~~~~~----~~l~~~l~~ll~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~--~-L- 1932 (2612)
.+|++++..+..+.. ........-+.|.+-+.+. +-+++....-..++.-+....++.-.+.++..|.. . +
T Consensus 526 r~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~ 605 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFD 605 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccC
Confidence 899999999987543 3445667777888888887 45665555555666666666666656666666632 1 1
Q ss_pred -CCCCh---hHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHH
Q 000051 1933 -KDPSA---SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008 (2612)
Q Consensus 1933 -~d~~~---~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~L 2008 (2612)
.+... ..|... |..++...+-. ... ...++..+. +..+...||++....+..+....-...... +..+
T Consensus 606 ~~~~ssf~~~~rl~l---l~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~~~ 677 (997)
T 1vsy_5 606 RESDAATHQTSKIYM---LRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PTTL 677 (997)
T ss_dssp CCSSCCCCCCSSHHH---HHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HHHH
T ss_pred CCCCcHHHHHHHHHH---HHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HHHH
Confidence 11111 123332 22233322211 111 233444444 778889999999999988866531111111 1222
Q ss_pred HHhccCC---------CcchHHHHHHHHHhhhc---ccccccccchhhccCCcchh----HHHHHHHHHHHhCCC----h
Q 000051 2009 LHALEDD---------QTSDTALDGLKQILSVR---TTAVLPHILPKLVHLPLSAF----NAHALGALAEVAGPG----L 2068 (2612)
Q Consensus 2009 l~~L~~~---------~~~~~al~~L~~il~~~---~~~vlp~Lip~L~~~~~~~~----~~~al~~La~~~g~~----l 2068 (2612)
++.-.++ .......+.+..++..- ...+- ...|. ...... ....+..|...++.. +
T Consensus 678 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~-~~~~~---~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 678 LEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVV-GLNPQ---QFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTS-SCCST---TTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhccc-ccCcc---ccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 3221111 01122222233332110 00000 00000 000111 123444555555554 7
Q ss_pred hhhHhh-HHHHHHHhcCCCCH-HHHHH-HHHHHHHhhhhc-ccccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHH-Hh
Q 000051 2069 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLVI-DEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 2142 (2612)
Q Consensus 2069 ~~~l~~-il~~Ll~~L~~~~~-~vr~~-a~~al~~l~~~~-~~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~-~~ 2142 (2612)
.++++. ++|.++.....++. ++... +..++..+.... ..+.++.++..+.+..+ +.+| .|.+++..+..+. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 777777 88888777655544 45444 444555543322 34557777877777666 5789 9999999987764 33
Q ss_pred cccchhccHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhhhhhhhhhcCCcccccC
Q 000051 2143 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 2220 (2612)
Q Consensus 2143 ~~~~~~~~~~~il~~L~~ll~d~d-~~V~~~a~~aL~~l~~~~-~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g 2220 (2612)
.-.--......++..++.++.|+. .+||+.|..+|+.++++. +......++..+++. ...
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~------------~~~------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKG------------LDV------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTS------------STT------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH------------Hhh------
Confidence 321112334577888888999999 999999999999999875 422211122111100 000
Q ss_pred CCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHH
Q 000051 2221 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 2300 (2612)
Q Consensus 2221 ~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~ 2300 (2612)
.+. ....+.. .. . +...|-++...|+.++
T Consensus 895 ---~~~---------------~~~~~~~-----------~~-~---------------------~~~~rH~aVLgL~AlV 923 (997)
T 1vsy_5 895 ---NKY---------------TSKERQK-----------LS-K---------------------TDIKIHGNVLGLGAII 923 (997)
T ss_dssp ---TSS---------------CHHHHHH-----------HH-H---------------------HCHHHHHHHHHHHHHH
T ss_pred ---ccc---------------ccccccc-----------cc-h---------------------HHHHHHHHHHHHHHHH
Confidence 000 0000000 00 0 0024556777788888
Q ss_pred HhcCCCc--cCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 000051 2301 RKGGIAL--KPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL 2343 (2612)
Q Consensus 2301 ~~~~~~l--~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~ 2343 (2612)
...|-.+ -+++|+++..+.+...|+.+ ++..+-++|+.+-..
T Consensus 924 ~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 924 SAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp TTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred hhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 8887776 67999999999888888655 999999999998543
No 69
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.80 E-value=7.9e-08 Score=116.29 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=168.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000051 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2612)
Q Consensus 1379 i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2612)
..+.+.+.+.+. ++..|..|+.++..+...........+. ..+|.++..+.++++.+|..|..++..+...-+.. .
T Consensus 13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456677777777 6888999999996655442221222222 58899999999999999999999999887532222 1
Q ss_pred H--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1456 v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
+ ...+|.+++.|.++++.++..++.+|+.++...+.. ..-.-..++|.+.+++.+.++.||..|+.+|+.++..-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-- 169 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-- 169 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 347899999999999999999999999999876554 22223568899999999999999999999999998532
Q ss_pred hhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCc
Q 000051 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2612)
Q Consensus 1533 ~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~ 1612 (2612)
+... . .+. -..++|.+.+.+.+.++.++..++.++++++.. ++..
T Consensus 170 ~~~~---~------------------~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 214 (252)
T 4db8_A 170 NEQI---Q------------------AVI------------DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 214 (252)
T ss_dssp HHHH---H------------------HHH------------HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hHHH---H------------------HHH------------HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC--CHHH
Confidence 1110 0 000 012456677777777889999999999999852 2222
Q ss_pred chhhH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000051 1613 MIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2612)
Q Consensus 1613 l~~~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~ 1647 (2612)
...+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22222 248888999999999999999999998765
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.79 E-value=1.5e-06 Score=114.78 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=229.7
Q ss_pred HhHHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch---h--HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhh---C
Q 000051 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---G 1370 (2612)
Q Consensus 1299 ~~i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~---~--~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~l---g 1370 (2612)
..-++.|+..|..+++++|..++.+|..+.....+. . ...|+.|++.|.. .+...+..|+.+|..++.+. .
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHH
Confidence 335778888999999999999999987776422211 1 2356777777654 45789999999999998641 2
Q ss_pred cchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc------------------CCC
Q 000051 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQ 1432 (2612)
Q Consensus 1371 ~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l------------------~D~ 1432 (2612)
...+.....++.|.+.+.+..+...++.|..++..|+.. ...-...+...+|.++..+ ...
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 223334467888888888644678888888888888752 2111122345567776654 112
Q ss_pred CHHHHHHHHHHHHHHHHhhcH--HhH---HhHHHHHHhhhcC------CChhhHHHHHHHHHHHHhhCchhhh-------
Q 000051 1433 VVAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLS------- 1494 (2612)
Q Consensus 1433 ~~~VR~aa~~al~~i~~~l~~--~~v---~~ilp~Ll~~L~~------~~w~~r~~a~~~L~~ia~~~p~~l~------- 1494 (2612)
++.|++.|..+++.+...-.. ..+ ..+++.|+..+.+ .+......|+.+|..+++.......
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 578999999999988653222 111 2355667666643 3556788899999888875311110
Q ss_pred -----------------h--hhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCC--h----hH--hhHHHHHHhhc
Q 000051 1495 -----------------Q--CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN--P----EI--ASLVPTLLMGL 1546 (2612)
Q Consensus 1495 -----------------~--~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~--~----~i--~~ivp~Ll~~l 1546 (2612)
. ..+..++.++.++.+ .++.++++|+.||..++..-.. . .+ ...+|.|.+.+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 0 123567788888854 5799999999999999753110 1 12 35689999999
Q ss_pred CCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhccCCCCcchhh-
Q 000051 1547 TDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPY- 1616 (2612)
Q Consensus 1547 ~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~--------s~~vr~~a~~~l~~l~~~~~~~~~l~~~- 1616 (2612)
..++..++ .++.+|.............-...+|.|.+.|.+. +.++...++.++++++.. +++.....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~ 442 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLR 442 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHH
Confidence 88887765 4555554422222222222356788888888764 468888999999998752 32222211
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000051 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~ 1648 (2612)
-...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 443 ~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 235788888888875 88999999999998875
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.78 E-value=1e-07 Score=111.80 Aligned_cols=185 Identities=22% Similarity=0.211 Sum_probs=147.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
..++.|.+.+.++ ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..+..++..+.. .
T Consensus 19 ~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 19 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred hHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567788888876 89999999988876532 2567888899999999999999999887732 4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhh
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2612)
..+|.+.+.|.++++.+|..++.+|+.+.. +..++.|.++++|+++.||..|+.+|+.++. ..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~ 143 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ER 143 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HH
Confidence 567888889999999999999999998742 3567888899999999999999999999864 24
Q ss_pred HHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1538 ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
.++.|.+.+.|++..+| .++.+|... .. ...++.|...+++.++.+|..|..+|+.+...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~------~~---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEI------GG---ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH------CS---HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh------Cc---hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67888889999999888 566666542 11 45678888888999999999999999887653
No 72
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.78 E-value=2.4e-07 Score=122.18 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=221.1
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhh-hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhH---
Q 000051 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--- 1535 (2612)
Q Consensus 1460 lp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l-~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--- 1535 (2612)
+|.++..|.++++..+..|+.+|..++...+..- .-.-...+|.|+++|.++++.++..|+++|..++.. +++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 6778888888888889999999999886544321 222356789999999999999999999999999874 2322
Q ss_pred ---hhHHHHHHhhcC-CCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhh--------cC--------CCHHHHH
Q 000051 1536 ---ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKK 1594 (2612)
Q Consensus 1536 ---~~ivp~Ll~~l~-d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l--------~d--------~s~~vr~ 1594 (2612)
...+|.|.+.+. +++..++ .+..+|.................+|.|.+.+ .+ .+..+.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 356899999998 6666665 4555554422222111112235778888877 22 2356667
Q ss_pred HHHHHHHHHhhccCCCCcchhhH--hhhHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhh----------------
Q 000051 1595 KAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM---------------- 1650 (2612)
Q Consensus 1595 ~a~~~l~~l~~~~~~~~~l~~~l--~~ll~~L~~~L~d------~~~~VR~~A~~aL~~L~~~~---------------- 1650 (2612)
.|+.++.+++.. ++...... +..++.|..++.+ ++..+.+.+..++..+....
T Consensus 162 ~a~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 162 NATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 999999999863 21111112 2466666666653 34456666666666553110
Q ss_pred ------------------------------------CCC--CchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCh-
Q 000051 1651 ------------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT- 1691 (2612)
Q Consensus 1651 ------------------------------------g~~--~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~- 1691 (2612)
|-+ ...+.++.+...|.+..+...+..++.+|+.++.+-+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 000 11345777778787766666777888888888754332
Q ss_pred ------hhH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhH-HhHHHHHHhhcCCCCh------hHHHH
Q 000051 1692 ------VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENE------SVRDA 1756 (2612)
Q Consensus 1692 ------~~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l-~~iip~ll~~L~d~~~------~VR~~ 1756 (2612)
..+ ...+|.+++.+.+++..+|..++.++..++..- .....+ ...+|++.+.|...+. ++...
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 112 356899999999999999999999999997632 222222 3589999999987543 46667
Q ss_pred HHHHHHHHHHHhhhc--hh--hhhHHHHhhccCCC-chHHHHHHHHHHHHH
Q 000051 1757 ALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2612)
Q Consensus 1757 Al~al~~lv~~~~~~--~i--~~llp~L~~~l~d~-~w~vR~~a~~ll~~l 1802 (2612)
++.++..++..-+.. .+ ...+|.+.+.+.++ +.+++..|..++..+
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 777777765322211 11 12567777777777 788888888777654
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.78 E-value=3.4e-07 Score=95.95 Aligned_cols=215 Identities=18% Similarity=0.292 Sum_probs=164.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhhcCcccc
Q 000051 2111 ESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPKEVQ 2189 (2612)
Q Consensus 2111 ~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~~~~~~l 2189 (2612)
..++..++..+.|+-|.+|.+|+..+..+.+..+ .....++..|+.++. +..-...+....+++.+..-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~----- 101 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK----- 101 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-----
Confidence 4677888888888899999999999999887554 344566677777754 444444455555666554321
Q ss_pred ccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhch
Q 000051 2190 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFV 2269 (2612)
Q Consensus 2190 ~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v 2269 (2612)
|+-+.+++|++.....-|++..|.+...+|+.+....+ ..+.
T Consensus 102 ----------------------------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l~~--- 143 (253)
T 2db0_A 102 ----------------------------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-MLMA--- 143 (253)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HHHH---
T ss_pred ----------------------------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HHHH---
Confidence 34456778888888888999999999999999997765 3333
Q ss_pred hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhH
Q 000051 2270 IPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP 2349 (2612)
Q Consensus 2270 ~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~ 2349 (2612)
.+..-+...+.++ +..-|.++|++++.++......+.||+|.|. ..|.|.++-||..|..+|++++...|.+.+
T Consensus 144 -~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~----aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 144 -SIVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRII----NLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp -HHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHH----GGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred -HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHH----HHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 3333345666665 6778999999999988877777788888765 468899999999999999999999898999
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000051 2350 LVGDLLSSLQVSDAGIREAILTALKGVLK 2378 (2612)
Q Consensus 2350 ~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~ 2378 (2612)
.+...+..++++...++...-.+|..+.-
T Consensus 218 ii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 218 VVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999988887788887777776653
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.78 E-value=6.5e-08 Score=112.51 Aligned_cols=188 Identities=20% Similarity=0.164 Sum_probs=145.8
Q ss_pred hhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1732 ~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
.++-+...+.+++.|.|++..+|..|..++..+- . +..+|.+.+.+.|+++.+|..++..++.+-
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----~---~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----D---ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----C---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcC----C---hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3445668899999999999999999998887532 2 235677777888999999999999988761
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~ 1891 (2612)
+ + ..++.+...+.|.+..||..|+..++.+.. + ..++.+.
T Consensus 74 -------~-~----------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~L~ 113 (201)
T 3ltj_A 74 -------D-E----------------------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E--------RAVEPLI 113 (201)
T ss_dssp -------C-G----------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--------GGHHHHH
T ss_pred -------C-H----------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H--------HHHHHHH
Confidence 0 0 112233345678899999999999987643 2 2355567
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~ 1971 (2612)
..+.++++.+|..|+.+|+.+.. +..++.|...+.|+++.+|..++.+|+.+ +. +..++.+.
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~-------~~~~~~L~ 175 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEI----GG-------ERVRAAME 175 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS-------HHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc-------hhHHHHHH
Confidence 77899999999999999988732 45677888888999999999999999986 22 34677778
Q ss_pred HHhcCCcHHHHHHHHHHHHHH
Q 000051 1972 TALCDSILEVRESAGLAFSTL 1992 (2612)
Q Consensus 1972 ~~L~D~d~~Vr~~A~~al~~l 1992 (2612)
..+.|+++.||..|..+++.+
T Consensus 176 ~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 176 KLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHH
Confidence 888899999999999998875
No 75
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.74 E-value=2.9e-07 Score=111.12 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cch
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2612)
.++.++..|.++++++|..++.++..+.....+.. ...++.+++.|... +...|..|+.+|+.++.... ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 36788999999999999999999988875443221 23577777766654 47889999999999986421 122
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+...+.++.+.+.+.+. ++..|..|+.++..++...+......+ ...+|.++..+.++++.+|..+..++..+...-+
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 22346788888888876 799999999999999853332111111 2579999999999999999999999999876432
Q ss_pred HH--h--HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1453 AQ--G--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1453 ~~--~--v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
.. . -...+|.+++.+.++++.++..++.+|+.++...+...... -..+++.+.+++++.++.||..|+++|.+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 22 1 14578999999999999999999999999997655443222 2468899999999999999999999999999
Q ss_pred hhcC
Q 000051 1528 SVIK 1531 (2612)
Q Consensus 1528 ~~~~ 1531 (2612)
....
T Consensus 241 ~~~~ 244 (252)
T 4hxt_A 241 SGGW 244 (252)
T ss_dssp HTCB
T ss_pred cCCC
Confidence 7654
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.74 E-value=9.5e-07 Score=116.40 Aligned_cols=342 Identities=13% Similarity=0.102 Sum_probs=221.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--h
Q 000051 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~ 1455 (2612)
++.+..++.+. ++..+..|+.++..++..-+. ....+ ...+|.++.++.++++.++..|..++..+...-++. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566677776 678899999999988743221 12122 257999999999999999999999999997642222 1
Q ss_pred H--HhHHHHHHhhhc-CCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhh--------cCC--------CHHHH
Q 000051 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2612)
Q Consensus 1456 v--~~ilp~Ll~~L~-~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L--------~D~--------~~~VR 1516 (2612)
+ ...+|.|++.|. +.+...+..++.+|..++.+ ++.-.......+|.|++++ .++ ++.|+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 346899999998 77889999999999999987 3221112237888899888 322 45666
Q ss_pred HHHHHHHHHHHhhcCCh-hH---hhHHHHHHhhcCC------CChhH-HHHHHHHHhcccc-------------------
Q 000051 1517 SAGQTALQQVGSVIKNP-EI---ASLVPTLLMGLTD------PNDHT-KYSLDILLQTTFV------------------- 1566 (2612)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~-~i---~~ivp~Ll~~l~d------~~~~~-r~al~~L~~~~~~------------------- 1566 (2612)
..|+++|..++..-.+. .+ ...+|.|...+.+ ++..+ ..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999998751111 12 1677777776653 33332 2333322211000
Q ss_pred -----------c----------------------cCChhhHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhccCCC-C
Q 000051 1567 -----------N----------------------TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 1611 (2612)
Q Consensus 1567 -----------~----------------------~i~~~~l~~iip~L~~~l~d-~s~~vr~~a~~~l~~l~~~~~~~-~ 1611 (2612)
. ....-.....++.+...+.+ .++.++..|+.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0 00000112345666666654 46899999999999998631110 0
Q ss_pred cc-hhhH--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC--CchhhHHHHHHHhccCCC-----HHHHHHHHHH
Q 000051 1612 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 1681 (2612)
Q Consensus 1612 ~l-~~~l--~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~--~~~~ll~~L~~~L~~~~~-----~~~R~~aa~~ 1681 (2612)
.+ ...+ ...+|.|.+++.+++.++|..|+.+|+.++..-.-. .-...+|.|.+.|...++ ......++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 124578888888876532 2234455666
Q ss_pred HHHHHHHhChh--hH--HhHhHHHHHhccCC-ChhhHhHHHHHHHHhh
Q 000051 1682 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2612)
Q Consensus 1682 L~~i~~~~g~~--~l--~~llp~l~~~~~~~-~~~vR~~~~~~l~~L~ 1724 (2612)
++.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+.
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 77766433221 11 35678888888888 8899998888887664
No 77
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.70 E-value=4.1e-05 Score=112.39 Aligned_cols=545 Identities=12% Similarity=0.077 Sum_probs=276.3
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh----hCCCCchhhHHHHH
Q 000051 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG----MGEENFPDLVSWLL 1663 (2612)
Q Consensus 1589 s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L-~d~~~~VR~~A~~aL~~L~~~----~g~~~~~~ll~~L~ 1663 (2612)
+...|+.|.+.+..+-... + ... .....+. .+.++.+|..|+..|...+.. +.++....+-..++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p-~------~~~---~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC-P------ICV---PCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC-T------THH---HHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCc-h------HHH---HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5678888888888765431 1 111 1112222 455788999999988887754 22222333444455
Q ss_pred HHhccC------CCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhcc--------
Q 000051 1664 DALKSD------NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-------- 1729 (2612)
Q Consensus 1664 ~~L~~~------~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~-------- 1729 (2612)
+.+.+. .+..+|...++.++.++....++.++++++.+++.+++ ++..++.++.+|..++.....
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r 174 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQR 174 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 554432 34678888999999999887777888999999888765 566788899888888764211
Q ss_pred ------chhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhcc--CCCchHHHHHHHHHHHH
Q 000051 1730 ------QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI--FNDNWRIRQSSVELLGD 1801 (2612)
Q Consensus 1730 ------~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l--~d~~w~vR~~a~~ll~~ 1801 (2612)
.+..+++.+++.+...+.+ .+..+... -+.. ... ...+-.++..+++.++.
T Consensus 175 ~~~l~~~l~~~~~~I~~~~~~iL~~---------------~~~~~~~~-----~~~~-~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 175 RRDIQQTLTQNMERIFSFLLNTLQE---------------NVNKYQQV-----KTDT-SQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHH---------------HHHHHHHH-----TTCS-TTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcc-----cccc-cchhhhhhhHHHHHHHHHHHHH
Confidence 0111111222222211110 00000000 0000 000 01123355555555554
Q ss_pred HHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcC--hhhH
Q 000051 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT--PKTL 1879 (2612)
Q Consensus 1802 ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~--~~~l 1879 (2612)
++.-++ . ..+.+ ..+.++..++....+ ..+|.+|++++..++... +...
T Consensus 234 ~l~Wi~------------------~----~~i~~-----~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~ 284 (1204)
T 3a6p_A 234 YIDWVS------------------M----SHITA-----ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR 284 (1204)
T ss_dssp TTTTSC------------------H----HHHHT-----TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHhccC------------------H----HHHHh-----ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH
Confidence 321100 0 00000 011244455544444 468999999999998744 3332
Q ss_pred HHHHH----HHHHHHHHHhc--C------CCHHHHHHHHHHHHHHHHHh-----------chhhhhhHHHHHhhhcCCCC
Q 000051 1880 KEIMP----VLMNTLISSLA--S------SSSERRQVAGRALGELVRKL-----------GERVLPSIIPILSRGLKDPS 1936 (2612)
Q Consensus 1880 ~~~l~----~ll~~L~~~L~--~------~~~~~R~~A~~aL~~lv~~~-----------~~~~l~~llp~L~~~L~d~~ 1936 (2612)
.+++. ..+..++.... + .+++.+...++.+..+.... ....+..+++.+.....+++
T Consensus 285 ~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~ 364 (1204)
T 3a6p_A 285 KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPS 364 (1204)
T ss_dssp GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCcc
Confidence 22222 22333444431 1 12222222222222222110 11235678888888888888
Q ss_pred hhHHHHHHHHHHHHHHhh---ChhhHHHhHhHHHHHHHH---Hhc---CC--------------cH-------HHHHHHH
Q 000051 1937 ASRRQGVCIGLSEVMASA---GKSQLLSFMDELIPTIRT---ALC---DS--------------IL-------EVRESAG 1986 (2612)
Q Consensus 1937 ~~vR~~a~~aL~~li~~~---~~~~l~~~l~~ll~~l~~---~L~---D~--------------d~-------~Vr~~A~ 1986 (2612)
..+-..++..-..++... ..+.+.++++.+++.+.. .+. +. ++ +.|....
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~ 444 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQG 444 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHH
Confidence 777777665444444432 124456788888888732 221 10 00 1233333
Q ss_pred HHHHHHHHHhChhhhhhhHHHHHHhccCCCcchHHHHHHHHHhhhc-ccc-cccccchhhccCCcchhHHHHHHHHHHHh
Q 000051 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR-TTA-VLPHILPKLVHLPLSAFNAHALGALAEVA 2064 (2612)
Q Consensus 1987 ~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~L~~il~~~-~~~-vlp~Lip~L~~~~~~~~~~~al~~La~~~ 2064 (2612)
..+..++...+...+..+.+.+...+.+.-.....-. .+... ++. .....-+.... ......++.++.+.+
T Consensus 445 d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~s~~~~~---~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 445 EVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNS----CSAVGTGEGSLCSVFSPSFVQ---WEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTCC---------------------CCSCSSSHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccc----ccccccccccccCcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 3333333322222333333444333322100000000 00000 000 00000000000 001122333333322
Q ss_pred -CCChhhhHh-hHHHHHHHhc---CCCCHHHHHHHHHHHHHhhhhcc--cccHHHHHHHHHhhcCC------------CC
Q 000051 2065 -GPGLNFHLG-TILPALLSAM---GDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGD------------NQ 2125 (2612)
Q Consensus 2065 -g~~l~~~l~-~il~~Ll~~L---~~~~~~vr~~a~~al~~l~~~~~--~~~l~~ll~~Ll~~l~~------------~~ 2125 (2612)
...-.++++ .+++.++..+ ...++.+|...+.+++.+...+. ++.+.++++.++..+.+ .+
T Consensus 518 ~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 518 FRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred hcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 000012222 2455555553 44688899999999988877553 46788899988877655 23
Q ss_pred hhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHhhcCc-----cccccHHHHHH
Q 000051 2126 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVPK-----EVQPSYIKVIR 2197 (2612)
Q Consensus 2126 ~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d---~~V~~~a~~aL~~l~~~~~~-----~~l~~lv~~l~ 2197 (2612)
..+|.+|+.++..+++..+..+.+|++++...+..++.... ..-+..-.+++..+....+. .++..++.++.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999888776433 44455566777766544332 23555666666
Q ss_pred HHHH
Q 000051 2198 DAIS 2201 (2612)
Q Consensus 2198 ~~l~ 2201 (2612)
+.+.
T Consensus 678 ~~w~ 681 (1204)
T 3a6p_A 678 SIWL 681 (1204)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 5554
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.69 E-value=1.1e-07 Score=115.04 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcchh-----HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC--cch
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 1373 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~~-----~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg--~~~ 1373 (2612)
.++.+...|.++++++|..++.++..++....+.. ...++.+++.|...+ ...|..|+.+|+.++.+.. ...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 36677777888888999999999976665422211 235667777666544 7899999999999986422 122
Q ss_pred hhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000051 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2612)
Q Consensus 1374 l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~ 1452 (2612)
+.....++.+.+.+.+. ++..|+.|+.+++.++..........+. ..+|.++..+.++++.+|..+..++..+...-+
T Consensus 92 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 22346788899999887 7999999999999997644321112222 589999999999999999999999998875432
Q ss_pred HHh---H-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHH
Q 000051 1453 AQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2612)
Q Consensus 1453 ~~~---v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2612)
... + ...+|.+++.+.+++..++..++.+|+.++...+....... ..+++.+.+++.+.+++||..|+.+|.+++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 221 1 56789999999999999999999999999976665433322 358899999999999999999999999876
Q ss_pred h
Q 000051 1528 S 1528 (2612)
Q Consensus 1528 ~ 1528 (2612)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 3
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.65 E-value=2.8e-06 Score=112.10 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=191.6
Q ss_pred chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh--cCCh-hH--hhHHHHHHhhcCC-CChhHH-HHHHHHHhccccccCC
Q 000051 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1498 ~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~-~i--~~ivp~Ll~~l~d-~~~~~r-~al~~L~~~~~~~~i~ 1570 (2612)
...+|.|+++|.+.++.||..|+++|..++.. -.+. .+ ...+|.|++.+.. ++..++ .+..+|..........
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 35679999999999999999999999999863 1222 12 4578889888875 444544 3333333211111111
Q ss_pred hhhHhhHHHHHHHhh------------------cCCCHHHHHHHHHHHHHHhhccCC-CCcchhhHhhhHHHHHHHhc--
Q 000051 1571 APSLALLVPIVHRGL------------------RERSAETKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV-- 1629 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l------------------~d~s~~vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~-- 1629 (2612)
.......+|.|.+.+ ...+.+++..|+.+|.+++..-.+ .+.+.. ...+++.|...+.
T Consensus 169 ~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHh
Confidence 111122355555543 112468999999999999863111 011111 1234455555543
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhhCC------------------------C-----CchhhHHHHHHHhccCCCHHHHH
Q 000051 1630 ----DPIPEVRSVAARAIGSLIRGMGE------------------------E-----NFPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1630 ----d~~~~VR~~A~~aL~~L~~~~g~------------------------~-----~~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
+++....+.|..+|..|+..... . .-...++.++..+........+.
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 35667888888888887754310 0 01245677778886655566777
Q ss_pred HHHHHHHHHHHHhChh------hH--HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCC
Q 000051 1677 GAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2612)
Q Consensus 1677 ~aa~~L~~i~~~~g~~------~l--~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d 1748 (2612)
.++.+|..++.+-+.. .+ ...+|.++..+.+++..+++.++.++..++..-... ...-...+|.+...|.+
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcC
Confidence 8888888886532211 12 456899999999999999999999999998754432 12234589999999987
Q ss_pred C--------ChhHHHHHHHHHHHHHHHhhhc--h-hh-hhHHHHhhccCCC--chHHHHHHHHHHHHHH
Q 000051 1749 E--------NESVRDAALGAGHVLVEHYATT--S-LP-LLLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2612)
Q Consensus 1749 ~--------~~~VR~~Al~al~~lv~~~~~~--~-i~-~llp~L~~~l~d~--~w~vR~~a~~ll~~ll 1803 (2612)
. .+.+...++.++..++..-... . ++ ..+|.|...+.+. ..+++..|..++..+.
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 5 3567778888887765321111 1 11 2567777766664 6677777887777764
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.57 E-value=1.9e-06 Score=111.42 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=199.7
Q ss_pred HhHHHHHHhhhcCCC------------hhhHHHHHHHHHHHHhhCchhhhhh--------hc---hhHHHHhhhhcCCC-
Q 000051 1457 KLVLPSLLKGLEDKA------------WRTKQSSVQLLGAMAYCAPQQLSQC--------LP---KIVPKLTEVLTDTH- 1512 (2612)
Q Consensus 1457 ~~ilp~Ll~~L~~~~------------w~~r~~a~~~L~~ia~~~p~~l~~~--------L~---~ivp~L~~~L~D~~- 1512 (2612)
...+|.+++.|...+ ...+..|.++|..++.+.|++.... |+ ...+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 567888888877532 4788899999999999888764331 11 11233444443321
Q ss_pred -HH-----HHH-------HHHHHHHHHHhhcCChh-H--hhHHHHHHhhcC----------CC-ChhH-HHHHHHHHhcc
Q 000051 1513 -PK-----VQS-------AGQTALQQVGSVIKNPE-I--ASLVPTLLMGLT----------DP-NDHT-KYSLDILLQTT 1564 (2612)
Q Consensus 1513 -~~-----VR~-------aA~~aL~~l~~~~~~~~-i--~~ivp~Ll~~l~----------d~-~~~~-r~al~~L~~~~ 1564 (2612)
.+ |++ .|+++|++++..-.+.. + ...++.|...+. +. +..+ ++|..+|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 11 666 88888988865422221 1 346677777663 11 1222 35655554422
Q ss_pred ccccCChhh---HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhh--HhhhHHHHHHH-hcCCCHHHHHH
Q 000051 1565 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKV-LVDPIPEVRSV 1638 (2612)
Q Consensus 1565 ~~~~i~~~~---l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~-L~d~~~~VR~~ 1638 (2612)
+........ ....+|.|.+.+.+.+.+++..|+.+|.+++.. .+ .+.... -...+|.|.++ +.+.++.+++.
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~-~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-AD-VNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CC-HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CC-HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 211101111 234689999999999999999999999999752 11 111111 12567888886 45678999999
Q ss_pred HHHHHHHHHhhhCCC---C--chhhHHHHHHHhccCCCH---HHHHHHHHHHHHHHHH--hChhh---H--HhHhHHHHH
Q 000051 1639 AARAIGSLIRGMGEE---N--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTVY---F--EHILPDIIR 1703 (2612)
Q Consensus 1639 A~~aL~~L~~~~g~~---~--~~~ll~~L~~~L~~~~~~---~~R~~aa~~L~~i~~~--~g~~~---l--~~llp~l~~ 1703 (2612)
|+.+++.++....+. . ....+|.|...+.+..+. ..+..++.+|..+... .+.+. + ...+|.+++
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 999999998733221 1 356788898888765432 3566677777776642 12221 1 346889999
Q ss_pred hccCCChhhHhHHHHHHHHhhhhhccchhhhH--HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh
Q 000051 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2612)
Q Consensus 1704 ~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l--~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~ 1768 (2612)
.+.+.+..+++.++.++..++....+ ...++ ...+|++...+...++.+++.|..++..+..+-
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999743222 22333 237999999999999999999999998877543
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.55 E-value=3.2e-06 Score=99.29 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhh-HHH
Q 000051 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQ 1420 (2612)
Q Consensus 1349 ~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i----~~~~~~~~R~~Al~al~~L~~~~~~---~~~~~-v~~ 1420 (2612)
+.+|..|..|...|...+...+...+ ..++.+.+++ .+. |+.+-..++..+..+...+++ .+.+| ...
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 34688888888887776654332222 2233334433 355 888888999999888876653 36666 478
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~i 1500 (2612)
++|.++..+||+++.||+.+..++..+....++ ..+++.+.+++.+++|++|.+++..++.+.....-.. ...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~ 205 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKS 205 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccc
Confidence 999999999999999999999999888765544 4577788889999999999999999999886422221 335
Q ss_pred H---HHHhhhhcCCCHHHHHHHHHHHHHHHhhcCCh
Q 000051 1501 V---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2612)
Q Consensus 1501 v---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2612)
+ |.+.++++|++..||++|..|+..+-...++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6 88899999999999999999999988887753
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.55 E-value=3.8e-06 Score=108.58 Aligned_cols=315 Identities=13% Similarity=0.019 Sum_probs=199.4
Q ss_pred hcHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhcccchhhHH-----------HHHHHHHHHcCCCC-
Q 000051 1377 YGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-----------QMLPLLLVAFSDQV- 1433 (2612)
Q Consensus 1377 ~~i~~~L~~~i~~~~-----------~~~~R~~Al~al~~L~~~~~~~~~~~v~-----------~ilp~ll~~l~D~~- 1433 (2612)
...+|.|.+++.... ++..|..|..++..++.+-++....... ...+.++.++..+.
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 366777777776532 3789999999999999887754443211 11244444444321
Q ss_pred -HH-----HHH-------HHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcC-----------CChhhHHHHHHHHHHH
Q 000051 1434 -VA-----VRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLED-----------KAWRTKQSSVQLLGAM 1485 (2612)
Q Consensus 1434 -~~-----VR~-------aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~-----------~~w~~r~~a~~~L~~i 1485 (2612)
.+ ||+ .|..++..+... +.. .+ ...+|.|+..|.. .+...++.|+.+|..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 11 665 566666666332 111 11 3456666666531 1245688999999999
Q ss_pred HhhCchhh--hhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhc
Q 000051 1486 AYCAPQQL--SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 1563 (2612)
Q Consensus 1486 a~~~p~~l--~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~ 1563 (2612)
+...+..- .......+|.|+.+|.+.+++|+..|+++|..++.. .++.. |.++-
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~------------------k~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNS------------------KKTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHH------------------HHHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHH------------------HHHHH-----
Confidence 98754321 112456789999999999999999999999999742 11111 10000
Q ss_pred cccccCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhccCCCCcchhh--HhhhHHHHHHHhcCCCH----HHH
Q 000051 1564 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 1636 (2612)
Q Consensus 1564 ~~~~~i~~~~l~~iip~L~~~-l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~--l~~ll~~L~~~L~d~~~----~VR 1636 (2612)
-...+|.|.+. +...+..++..++.++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344567788888888888876311111 111 24578889999886654 489
Q ss_pred HHHHHHHHHHHhh--hCCCC-----chhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--hhhH--HhHhHHHHHhc
Q 000051 1637 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVYF--EHILPDIIRNC 1705 (2612)
Q Consensus 1637 ~~A~~aL~~L~~~--~g~~~-----~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g--~~~l--~~llp~l~~~~ 1705 (2612)
+.|..+|..++.. .+++. -...+|.|++.|.+.. ...+..++.+|+.+..... ...+ ...+|.+++.+
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998862 12221 1356888998887654 5578888888888863211 1122 35688999999
Q ss_pred cCCChhhHhHHHHHHHHhhhhhcc
Q 000051 1706 SHQRASVRDGYLTLFKYLPRSLGV 1729 (2612)
Q Consensus 1706 ~~~~~~vR~~~~~~l~~L~~~~g~ 1729 (2612)
.+.++.+|+.+..++..++..-+.
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred hCCCHHHHHHHHHHHHHHHcCCHh
Confidence 999999999999999999876543
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.2e-06 Score=107.25 Aligned_cols=194 Identities=14% Similarity=0.184 Sum_probs=143.8
Q ss_pred HhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHH
Q 000051 1780 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859 (2612)
Q Consensus 1780 L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~ 1859 (2612)
+.+.+.+++|+.|.++++-+..++...+... .+|+. ...+ ..+...+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~~~-----~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQIY-----WRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCT-----TSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HHHH-----HHHHHHHHHHhccchHH
Confidence 6678899999999999998888765421110 00000 0001 11223333456899999
Q ss_pred HHHHHHHHHHHHHhcCh------hhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhc
Q 000051 1860 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2612)
Q Consensus 1860 VR~aA~~~l~~l~~~~~------~~l~~~l~~ll~~L~~~-L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L 1932 (2612)
|...+++++..++...+ ..+..++..+++.++.. +++....+|..+..++-.++...+. ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677888888865 8899999999999999888865442 345667788889
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhh--HHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCh
Q 000051 1933 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2612)
Q Consensus 1933 ~d~~~~vR~~a~~aL~~li~~~~~~~--l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~ 1998 (2612)
.+++|.+|.+++.+|..++..+|... ..+.++.+++.+.+++.|.|+.||++|..++..++..+|.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998877543 3456778888899999999999999999999999998885
No 84
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.51 E-value=1.8e-06 Score=101.08 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=143.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhh
Q 000051 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2612)
Q Consensus 1420 ~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~ 1495 (2612)
...|.+...+.++++.+|..|..++..+...-+.. .+ ...+|.+++.|.++++..+..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45667778889999999999999999987533222 11 357899999999999999999999999999765544322
Q ss_pred hh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhH
Q 000051 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1496 ~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l 1574 (2612)
.. ...+|.++.+++++++.||..|+++|+.++..- +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 22 468899999999999999999999999998531 1110 0000 0
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh-hHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~-~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~ 1648 (2612)
...+|.+.+.+.+.+.+++..++.++++++.. .++.... .-...++.+.+++.++++.+|+.|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 13567777777777889999999999999863 2111111 123578999999999999999999999998753
No 85
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.51 E-value=7.3e-06 Score=115.17 Aligned_cols=689 Identities=11% Similarity=0.066 Sum_probs=350.8
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHhchh--h
Q 000051 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG--ELVRKLGER--V 1920 (2612)
Q Consensus 1845 vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~--~lv~~~~~~--~ 1920 (2612)
++..+...-...=..||..|-.++.......++....++|.+++.+-..+.+.+.+.-..|..+|. .+...+... .
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 333444333444678999999999999998888888889998888877666655555555555543 333333332 5
Q ss_pred hhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh-------------------------------------hHHHhH
Q 000051 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-------------------------------------QLLSFM 1963 (2612)
Q Consensus 1921 l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~-------------------------------------~l~~~l 1963 (2612)
.+.+++.+.++...+.+++..-+-.....++...... .....+
T Consensus 214 ~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~ 293 (997)
T 1vsy_5 214 IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLL 293 (997)
T ss_dssp HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888776666665443333323333211100 001111
Q ss_pred hHHHHHHHHHh-cCCc--HHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhh-------
Q 000051 1964 DELIPTIRTAL-CDSI--LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSV------- 2031 (2612)
Q Consensus 1964 ~~ll~~l~~~L-~D~d--~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~------- 2031 (2612)
..+...+.... .+.+ ......++..+-.+........-.+++..+++.+.++.. +..++.++..++..
T Consensus 294 ~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~~~ 373 (997)
T 1vsy_5 294 VDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLSDY 373 (997)
T ss_dssp HHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 23333333333 1223 444444444433333222222223455566666655432 34455544443321
Q ss_pred --cccccccc-cch-hhc--cCCcchhHHHHHHHHHHHhCCC-hh--h-hHhhHH-HHHHHhcC------CCCHHHHHHH
Q 000051 2032 --RTTAVLPH-ILP-KLV--HLPLSAFNAHALGALAEVAGPG-LN--F-HLGTIL-PALLSAMG------DDDMDVQSLA 2094 (2612)
Q Consensus 2032 --~~~~vlp~-Lip-~L~--~~~~~~~~~~al~~La~~~g~~-l~--~-~l~~il-~~Ll~~L~------~~~~~vr~~a 2094 (2612)
.-+.+... ..| .+. ..+...+...-...+.+.-.+. +. . |.+-+. |.-+.... +-++..+.
T Consensus 374 ~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l~~~~~e~~-- 451 (997)
T 1vsy_5 374 EYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKLNLRENELE-- 451 (997)
T ss_dssp TTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCCCCCHHHHH--
T ss_pred CCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCCCCCHHHHH--
Confidence 00001100 000 000 0010011111111111100000 00 0 100000 00000000 11222221
Q ss_pred HHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH----hcccchhccHHHHHHHHHHHhcCCChhHH
Q 000051 2095 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYK----NSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2612)
Q Consensus 2095 ~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~----~~~~~~~~~~~~il~~L~~ll~d~d~~V~ 2170 (2612)
++..+....+.+.+..++..+.+- ++++..-+..-+..+..+++ +.+. ..++.+.+.+-.++.|.|..-.
T Consensus 452 --i~~~f~~~~~~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~~---~~l~~l~~~~e~L~~~~dk~~q 525 (997)
T 1vsy_5 452 --VLKTAGHLLTREFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFCE---LNMSDLFELCESYYNKDDKASM 525 (997)
T ss_dssp --HHHHHHTTCCHHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTCC---CCGGGHHHHHHHTCCSSCHHHH
T ss_pred --HHHHHHhhcCHHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccch---hhHHHHHHHHHHHhccccHHHH
Confidence 223333334566677777776543 22222224445555555553 3333 2355666666667888898889
Q ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHh-cCCHHHHHHH
Q 000051 2171 AAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLI-SGSAELREQA 2249 (2612)
Q Consensus 2171 ~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~-~~~~~~r~~a 2249 (2612)
.++.+.++.++.....-..+. .. +...-+.|.+...+. +-+++....-
T Consensus 526 r~aaEi~aGll~gsK~w~~~~-~~------------------------------~~w~~l~p~l~~~l~~~lt~et~~~W 574 (997)
T 1vsy_5 526 IMSVEIVAGLVCGSKFMSVSD-LD------------------------------KRDTFIENFLAKCLDYELNHDAFEIW 574 (997)
T ss_dssp HHHHHHHHHHSSCCSSCCTTT-HH------------------------------HHHHHHHHHHHHHHSSCCCTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHH-HH------------------------------HHHHHHHHHHHHHHhccCCchhHHHH
Confidence 999999998876543211000 00 111225666667777 4577777777
Q ss_pred HHHHHHHHHhcChhhhhhchhhhhHHHHHHhc------CC--CCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHH
Q 000051 2250 ALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DR--FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 2321 (2612)
Q Consensus 2250 a~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~------~~--~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~k~ 2321 (2612)
..|+..+....++..+. ||+..+. +. .+.-....-+..|..++...+-.+.. ...+...++
T Consensus 575 ~~~i~~~~~~~DprR~~--------~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~-- 643 (997)
T 1vsy_5 575 STLAWWLPAVVDLRRSK--------TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV-- 643 (997)
T ss_dssp HHHHHHHHHHSCGGGCH--------HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--
T ss_pred HHHHHHHhcCCChhhhH--------HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--
Confidence 77788877776644443 3344331 11 01111222344555444444433333 444554444
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcc--C---ChhHH-------------------------HHHHHHhhhc---------CC
Q 000051 2322 LQDSTRTVRSSAALALGKLSALS--T---RVDPL-------------------------VGDLLSSLQV---------SD 2362 (2612)
Q Consensus 2322 L~d~~~~vR~~Aa~aLg~L~~~~--~---~~~~~-------------------------l~~Ll~~l~~---------~d 2362 (2612)
++++...||...+..|..+.... | +++.+ +..+.+.+.. +.
T Consensus 644 l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~ 723 (997)
T 1vsy_5 644 FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQ 723 (997)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCST
T ss_pred hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCcc
Confidence 78889999999999999885432 2 12212 2222222220 00
Q ss_pred ----HH---HHHHHHHHHHHHHHhcCCCcChHHHHH-HHHHHHHhhcCCCH-HHHHH-HHHHHHHHHhh-CChhHHHHHH
Q 000051 2363 ----AG---IREAILTALKGVLKHAGKSVSSAVKIR-VYSVLKDLVYHDDD-HVRVS-AASILGIMSQC-MEDGQLADLL 2431 (2612)
Q Consensus 2363 ----~~---vr~~~l~AL~~vi~~~g~~~~~~~~~~-i~~~L~~~l~~~~~-~vr~~-aa~~Lg~L~~~-~~~~~~~~~l 2431 (2612)
.. .-.+++.-|...+.........++.+. +++.|..+.+..++ +.... +..++..++.. .+++.+..++
T Consensus 724 ~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l 803 (997)
T 1vsy_5 724 QFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIV 803 (997)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00 011222222222211100001233333 44444444444444 55555 66778777544 4444455566
Q ss_pred HHHHhhcC-CCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCC-hhHHHhHHHHHHHHHhhhhccCCC
Q 000051 2432 QELLNLAS-SPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPA 2509 (2612)
Q Consensus 2432 ~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~-~~ir~~a~~alg~ll~~~~~~~~~ 2509 (2612)
..+..... +++| .|.....-+..+.-.+-- ++...-...|.+.+.+.+.|.. .+||+.|..+++.++......
T Consensus 804 ~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f-~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~--- 878 (997)
T 1vsy_5 804 DYVCSSNVALSSN-QTKLQLAFIQHFLSAELL-QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEE--- 878 (997)
T ss_dssp HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT-TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSH---
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCch---
Confidence 55544333 5789 776433333333322221 2233344678899999999999 999999999999988653110
Q ss_pred CchhhHHHHHHHHhhcCC------------CCHHHHHHHHHHHHHHHhhCchhh--hhhHhHHHHHHHhhhcCCcchhhh
Q 000051 2510 NTTVVVDILASVVSALHD------------DSSEVRRRALSALKSVAKANPSAI--MVHVALFGPALAECLKDGSTPVRL 2575 (2612)
Q Consensus 2510 ~~~~l~~~l~~~~~~l~~------------~~~~vr~~a~~~l~~~a~~~~~~v--~~~l~~l~p~l~~~~~~~~~~vk~ 2575 (2612)
....+++..|...... .+.-.|-.|+.+|+++.+..|..+ -++++.++..|-.-..+ ..||+.
T Consensus 879 --~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~ 955 (997)
T 1vsy_5 879 --QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGN 955 (997)
T ss_dssp --HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHH
T ss_pred --hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHH
Confidence 1233455555554422 111466788888999999999887 56888888777777777 567999
Q ss_pred hHHHHHHHHhcccccc
Q 000051 2576 AAERCAVHAFQLTRGI 2591 (2612)
Q Consensus 2576 aae~~~~~~~~~~~~~ 2591 (2612)
.+.+|+-..-+.+++.
T Consensus 956 tvk~tlseFkrTH~D~ 971 (997)
T 1vsy_5 956 AAKNTISEFKKVRADT 971 (997)
T ss_dssp HTHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhccchh
Confidence 9999999988877654
No 86
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.50 E-value=7.9e-07 Score=108.96 Aligned_cols=239 Identities=15% Similarity=0.206 Sum_probs=159.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc----c--ch-hhHHH-HHHHHHHHcCCC-----CHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGR----L--FE-PYVIQ-MLPLLLVAFSDQ-----VVAVREAAECAA 1444 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~----~--~~-~~v~~-ilp~ll~~l~D~-----~~~VR~aa~~al 1444 (2612)
++.+.|..-+-+. .|..|+||.+++..+....|. . .. ..... ++=..+..|+|- ..-||++|++++
T Consensus 174 qfcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 174 DFFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp GTTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 3666676667777 699999999999999987652 1 11 11222 222334556663 356999999999
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2612)
+.+ ..+++. -.++-.++..+..+.|.+|++++..|..+ .+.+.. ++.+++.++..|+|.+.+||..|+.+|.
T Consensus 253 GaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLi 324 (800)
T 3oc3_A 253 SRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLC 324 (800)
T ss_dssp HHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred HHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhh
Confidence 999 888776 46666777777888999999999999877 222222 8999999999999999999999999999
Q ss_pred HHHhhcCChhHhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000051 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2612)
Q Consensus 1525 ~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~ 1604 (2612)
.++ ....+..++..+.+.+.+-++- .++-..++.. +..++
T Consensus 325 PIA---~p~~l~~LL~iLWd~L~~LDDL------------------SASTgSVMdL-------------------LAkL~ 364 (800)
T 3oc3_A 325 HFP---ITDSLDLVLEKCWKNIESEELI------------------SVSKTSNLSL-------------------LTKIY 364 (800)
T ss_dssp TSC---CSSTHHHHHHHHHHHHHTCCSC------------------CTTHHHHHHH-------------------HHHHH
T ss_pred hhc---chhhHHHHHHHHHHHhhhhccc------------------chhhHHHHHH-------------------HHHHH
Confidence 888 3356777888887776543220 1111122222 22222
Q ss_pred hccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHH
Q 000051 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676 (2612)
Q Consensus 1605 ~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~ 1676 (2612)
..-.. .... +.++|.+...+.++...||.++.+++..+. ...++..+++.+--+....++.
T Consensus 365 s~p~~-a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~ 425 (800)
T 3oc3_A 365 RENPE-LSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIRE 425 (800)
T ss_dssp HHCTT-CCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHH
T ss_pred cCCcc-cccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHH
Confidence 21100 0011 267888888889999999999999887655 3345555555544444443443
No 87
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.48 E-value=1.5e-06 Score=101.63 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=139.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhhCc--chhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-
Q 000051 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV- 1418 (2612)
Q Consensus 1342 ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~--~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v- 1418 (2612)
.+..|.++++...|..|+.+|..++.+... ..+...+.++.+.+.+.+. ++..|..|+.+++.++.+.+......+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334444556678888888888888754221 1222336788888999887 799999999999998753332111111
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh----HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~----v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
...+|.++..+.++++.+|..|..++..+...-+... -...+|.+++.+.+++..++..++.+|+.++...+....
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 174 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 2478999999999999999999999999875332221 145789999999999999999999999999986554432
Q ss_pred hh-hchhHHHHhhhhcCCCHHHHHHHHHHHHHHHh
Q 000051 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1495 ~~-L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2612)
.. -...++.+.+++.+.+++||..|+.+|..+++
T Consensus 175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 24688999999999999999999999998864
No 88
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.43 E-value=0.00015 Score=76.36 Aligned_cols=214 Identities=17% Similarity=0.225 Sum_probs=137.8
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 000051 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923 (2612)
Q Consensus 1844 ~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~ 1923 (2612)
+++..+...++|.-|.|+..|+.++..+.+..|....+.+..++-.+- ++..-..-+...+++|.+++. .+.....
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i-~Pe~v~~ 107 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKS 107 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHH-CHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHh-CHHHHHh
Confidence 466666777899999999999999999999888766655555443321 244444556667788877654 3445566
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhh
Q 000051 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003 (2612)
Q Consensus 1924 llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ 2003 (2612)
++|.+..-++-.++..|.+..++|++++... |. .++.++..+..++.++|..-|-.|...++.
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaran-P~----l~~~v~rdi~smltskd~~Dkl~aLnFi~a------------ 170 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKAN-PM----LMASIVRDFMSMLSSKNREDKLTALNFIEA------------ 170 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhC-hH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHH------------
Confidence 7788877777678999999999999886532 22 234455555556666664444444333322
Q ss_pred hHHHHHHhccCCCcchHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhc
Q 000051 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM 2083 (2612)
Q Consensus 2004 ilp~Ll~~L~~~~~~~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L 2083 (2612)
.|..-.+|....+|.|+..|
T Consensus 171 ------------------------------------------------------------lGen~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 171 ------------------------------------------------------------MGENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp ------------------------------------------------------------CCTTTHHHHGGGHHHHHGGG
T ss_pred ------------------------------------------------------------HhccCccccCcchHHHHHHH
Confidence 23333455555666666667
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 000051 2084 GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFY 2140 (2612)
Q Consensus 2084 ~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~ 2140 (2612)
.|.++-||.++.+++..+... .+.++.++...++.++|.+..+......+++.+.
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 777777777777777666542 2336666666666676666666666666665553
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.42 E-value=1.2e-05 Score=94.46 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=143.4
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCC
Q 000051 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2612)
Q Consensus 1778 p~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~ 1857 (2612)
+.+...+++.+|+.|..+++.+.+.+...+ ..+... .+-++..+...+.|.+
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-----------------------~~~~~~-----lDll~kw~~lr~~d~N 100 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-----------------------RSLLSN-----SDLLLKWCTLRFFETN 100 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-----------------------HHHHHT-----HHHHHHHHHHHTTSCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------HHHHHH-----HHHHHHHHHHHHhCCC
Confidence 456677889999999999988877653210 111111 1223443333457999
Q ss_pred HHHHHHHHHHHHHHHhcChh---hHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcC
Q 000051 1858 LSVRQAALHVWKTIVANTPK---TLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933 (2612)
Q Consensus 1858 ~~VR~aA~~~l~~l~~~~~~---~l~~~-l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~ 1933 (2612)
..|-..+++++..++....+ .+.++ ...++|.++..++++...+|..+...+..+....++ ..+.+.+.+++.
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHc
Confidence 99999999999998764432 13333 577899999999999999999999999887765443 356777788999
Q ss_pred CCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhh
Q 000051 1934 DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI---PTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2612)
Q Consensus 1934 d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll---~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~ 2001 (2612)
++++.+|.+++..++.++..+|... ...+ +.+.+.+.|+|..||++|..++..++...|....
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999888652 2345 8889999999999999999999999999987544
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.37 E-value=4.5e-06 Score=102.20 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.0
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHhhCchh-----hhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCC-----
Q 000051 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2612)
Q Consensus 1463 Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~-----l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2612)
+-+.|.+++|..|..|++-|..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999998877654332 2223556667777889999999999999999999876542
Q ss_pred ----hhHhhHHHHHHhh-cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1533 ----~~i~~ivp~Ll~~-l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
..+..++|.++.. +.|+...++ .+++.+.. ++.... ....+++.+..++.+.++.+|..+..++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~--~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILS--LCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH--HHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH--HHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 1346678888764 788887776 34544432 111111 2234677888899999999999999999998876
Q ss_pred cCCC-CcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1607 ~~~~-~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
++.. -...+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 1245567788888999999999999999999999999999864
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.34 E-value=4.3e-06 Score=102.69 Aligned_cols=211 Identities=16% Similarity=0.156 Sum_probs=157.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHhhhHHhHhhhcch-------hHHHHHHHHHHhhcC-------C--ChHHHHHHHHHHHH
Q 000051 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-------APTLVSRLLDQLMKS-------D--KYGERRGAAFGLAG 1364 (2612)
Q Consensus 1301 i~~~L~~~L~~~~~~Vq~~~~~~L~~lv~~~~~~-------~~~li~~ll~~L~~~-------~--~~~~R~~Aa~~L~~ 1364 (2612)
+.+.|..-|-+++.++|..|+-+|..+++..+.. ..++.-.++..+.-+ + -..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 8899999999999999999999999998876421 124444555554421 1 13789999999999
Q ss_pred HHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000051 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2612)
Q Consensus 1365 l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al 1444 (2612)
+ ..++.. ..++..+...+... .|.+|++++.++.++ .+.+.. +..++|.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777765 25555555555555 799999999999998 222222 788999999999999999999999998
Q ss_pred HHHHHhhcHHhHHhHHHHHHhhhcC-CCh-hhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHH
Q 000051 1445 RAMMSQLSAQGVKLVLPSLLKGLED-KAW-RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2612)
Q Consensus 1445 ~~i~~~l~~~~v~~ilp~Ll~~L~~-~~w-~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~a 1522 (2612)
.-++ .+..+..++..+.+.|.+ ++- ......+.+|..++...+. ....+.++|.|...+.++-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 7776 445677777777777654 222 2333445677777765442 22346899999999999999999999999
Q ss_pred HHHHH
Q 000051 1523 LQQVG 1527 (2612)
Q Consensus 1523 L~~l~ 1527 (2612)
+..+.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 87665
No 92
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.18 E-value=4.9e-05 Score=92.68 Aligned_cols=135 Identities=18% Similarity=0.157 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHH---hH-HhHHHHHHhhh
Q 000051 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGL 1467 (2612)
Q Consensus 1394 ~~R~~Al~al~~L~~~~~~~~~~~v-~~ilp~ll~-~l~D~~~~VR~aa~~al~~i~~~l~~~---~v-~~ilp~Ll~~L 1467 (2612)
..|..|+..|..+++.... -..++ ...+|.++. ++.++++.||..|+.+++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 5677788877777764331 11112 256889999 999999999999999999998654332 12 35789999988
Q ss_pred cC-CChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1468 ~~-~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.+ .+...|..|+.+|+.++.+.+....... ...+|.|..+|++.++.||..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 85 4678899999999999987665443332 36889999999999999999999999999875
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.13 E-value=0.00017 Score=80.05 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=161.9
Q ss_pred HhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHh----hhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000051 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2612)
Q Consensus 1736 ~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~----~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~ 1811 (2612)
+..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.|+-..|+++++.++...+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp---- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP---- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC----
Confidence 346677888889999999999999999999874 334677899999999999999999999999999984321
Q ss_pred cccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 000051 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2612)
Q Consensus 1812 ~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~~D~~~~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~ 1891 (2612)
++++.+..+..++.....+.+...+..|.+.++.+-.. ...+.+...+.
T Consensus 108 -------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~ 156 (265)
T 3b2a_A 108 -------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYIN 156 (265)
T ss_dssp -------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHH
T ss_pred -------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHH
Confidence 12233445555665566788899999999999988221 23466777788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhchh-hhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHhHhHHHHHH
Q 000051 1892 SSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI 1970 (2612)
Q Consensus 1892 ~~L~~~~~~~R~~A~~aL~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~l~~ll~~l 1970 (2612)
..+.+++..++.+|.+++.++....++. .+..++.-+...++++|+.++.-+...+-+++..--.+...+-+..+...+
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v 236 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIV 236 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHH
Confidence 8889999999999999999998877654 567777777778888999999999999988765422222223333333333
Q ss_pred HHHh-cCCcHHHHHHHHHHH
Q 000051 1971 RTAL-CDSILEVRESAGLAF 1989 (2612)
Q Consensus 1971 ~~~L-~D~d~~Vr~~A~~al 1989 (2612)
.... -...|.+|..|...-
T Consensus 237 ~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 237 DGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHH
Confidence 3333 356778888775443
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.12 E-value=7.7e-05 Score=93.59 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---HhH--HhHHHHH
Q 000051 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~~~~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~---~~v--~~ilp~L 1463 (2612)
++..|..|..++..++.+-.. ....+ ...+|.++..+..+++.+++.|..++..+...-.+ ..+ ...+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 356788888888888743221 12222 35799999999999999999999999999753111 122 3468889
Q ss_pred Hhhh-cCCChhhHHHHHHHHHHHHhhCchh-hhhh-hchhHHHHhhhhcCCCH----HHHHHHHHHHHHHHhhc-CChhH
Q 000051 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2612)
Q Consensus 1464 l~~L-~~~~w~~r~~a~~~L~~ia~~~p~~-l~~~-L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~-~~~~i 1535 (2612)
++.| .+.+...+..++.+|..++...++. ..-. -...+|.|.+++.+.++ +|++.|+.+|..++..+ .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9874 5677888999999999999854332 1111 35788999999987654 59999999999998532 11211
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchh
Q 000051 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2612)
Q Consensus 1536 ~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~ 1615 (2612)
.. .+.. ...+|.|...+.+.+.+++..|+.+|.+++.. +++....
T Consensus 256 ~~---------------------~i~~------------~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~ 300 (354)
T 3nmw_A 256 RQ---------------------ILRE------------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--NPKDQEA 300 (354)
T ss_dssp HH---------------------HHHT------------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHH
T ss_pred HH---------------------HHHH------------cCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC--CHHHHHH
Confidence 10 0000 12467777777778888999999999998742 2212111
Q ss_pred hH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000051 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2612)
Q Consensus 1616 ~l-~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~ 1653 (2612)
.. ...+|.|.+++.++++.+|+.|+.+|..++..-+..
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 11 357899999999999999999999999999864443
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.08 E-value=7.3e-05 Score=93.75 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=156.2
Q ss_pred CHHHHHHHHhhhHHhHhhhcc---hh---HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhC---cchhhhhcHHHHH
Q 000051 1313 SEAVQRAVSSCLSPLMQSMQD---EA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 1383 (2612)
Q Consensus 1313 ~~~Vq~~~~~~L~~lv~~~~~---~~---~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg---~~~l~~~~i~~~L 1383 (2612)
++++|..++.+|..+.....+ .. ...++.++..|.. ++...+..|+.+|..++.+-. ...+.....++.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 467899999999887633211 11 3457788877654 456889999999999986411 1223334677888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHh--hcHHh
Q 000051 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQ--LSAQG 1455 (2612)
Q Consensus 1384 ~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v--~~ilp~ll~~l~D~~~----~VR~aa~~al~~i~~~--l~~~~ 1455 (2612)
.+.+....+...++.|+.++..++......-...+ ...+|.+...+.+.++ .+++.|..++..+... -.+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88653333688888999999999863322112222 3689999999986654 4888888888888752 12222
Q ss_pred ---H--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1456 ---v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
+ ...+|.|++.|.+.+...+..|+.+|..++...+++..... ...+|.|.+++.+.++++|+.|+.+|..+...
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1 34689999999999999999999999999876665433222 46789999999999999999999999999976
Q ss_pred cC
Q 000051 1530 IK 1531 (2612)
Q Consensus 1530 ~~ 1531 (2612)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
No 96
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.05 E-value=4.9e-05 Score=92.69 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHhhhCcc-hhhhhcHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHH
Q 000051 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2612)
Q Consensus 1353 ~~R~~Aa~~L~~l~~~lg~~-~l~~~~i~~~L~~-~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~ 1428 (2612)
..|..|...|..++...... .+.....++.+.. .+.+. ++.+|+.|+.+++.++..-+. ....+. ..+|.++.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 34555666666666533211 1112245566666 77776 799999999999999865432 222332 588999999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh-chhHH
Q 000051 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2612)
Q Consensus 1429 l~-D~~~~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L-~~ivp 1502 (2612)
+. ++++.+|+.|..++..+....++. .+ ...+|.|+..|.+.+..++..++.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 97 568999999999999987654332 22 35789999999999999999999999999988665433322 46889
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.|+.+|.++++.||..|..+|+.+...
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.02 E-value=0.0013 Score=73.19 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=157.7
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--hcHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE-PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ--LSAQ 1454 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~-~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~--l~~~ 1454 (2612)
+.+..+...+.++ |..++..++++++.+....++.+. ..+..++|.++..+.+++..|--.|..|++.+... +++.
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566677777766 899999999999999998765443 45778999999999999999999999999999885 5677
Q ss_pred hHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh
Q 000051 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2612)
Q Consensus 1455 ~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2612)
++..+...+.+-+.+++--.+..+.+.+|.+ ......+.++..+..++...+++|+.+|..++..++..-.+++
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 8888888888888888877888888888887 1122246777888888888899999999999999987665543
Q ss_pred H-hhHHHHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCCCCcc
Q 000051 1535 I-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2612)
Q Consensus 1535 i-~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l 1613 (2612)
+ ..++..+-..+ +..++.++..|.+.+..+.+. .-++++
T Consensus 186 i~~~I~~eI~elL---------------------------------------~~eD~~l~e~aLd~Le~ils~-pi~~~~ 225 (265)
T 3b2a_A 186 HLTLILDEIPSLL---------------------------------------QNDNEFIVELALDVLEKALSF-PLLENV 225 (265)
T ss_dssp CGGGTTTTHHHHH---------------------------------------TCSCHHHHHHHHHHHHHHTTS-CCCSCC
T ss_pred HHHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHHcC-cccHhH
Confidence 2 44443333333 333456666666666666553 222444
Q ss_pred hhhHhhhHHHHHHHh-cCCCHHHHHHHHHH
Q 000051 1614 IPYIGLLLPEVKKVL-VDPIPEVRSVAARA 1642 (2612)
Q Consensus 1614 ~~~l~~ll~~L~~~L-~d~~~~VR~~A~~a 1642 (2612)
.+-+-.+......+. ....|.+|..|-..
T Consensus 226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 226 KIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 444444555555554 45667777776543
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.84 E-value=4.5e-05 Score=94.17 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhHHHh
Q 000051 1883 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2612)
Q Consensus 1883 l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d~~~~vR~~a~~aL~~li~~~~~~~l~~~ 1962 (2612)
...++..+++.+.+++...|....-.+..+... .+.++ -+...+.+-++++++-+|..++.+++.+.. .+.
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m 136 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-------STM 136 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHH
Confidence 345677788899999999999998888776655 44454 677888888899999999999999998732 234
Q ss_pred HhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhhccccccccc
Q 000051 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHI 2040 (2612)
Q Consensus 1963 l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~vlp~L 2040 (2612)
++.+.+.+.+++.|.++-||..|+-+...++.. .++.+..+++.+-+.+.+.+. ...++..+.++... ....+..+
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kL 214 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKM 214 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHH
Confidence 577888899999999999999999988887653 344556677777777766542 24566666666532 22344556
Q ss_pred chhhccCCc-chh-HHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHH
Q 000051 2041 LPKLVHLPL-SAF-NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELL 2118 (2612)
Q Consensus 2041 ip~L~~~~~-~~~-~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll 2118 (2612)
++.+....+ +.+ ....+..++.....+-...-..+++.+...++..++.|.-.+..++-.+-. .+...+......+.
T Consensus 215 v~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~ 293 (355)
T 3tjz_B 215 ISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQ 293 (355)
T ss_dssp HHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC------------CCCTHH
T ss_pred HHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHH
Confidence 666655433 122 222333222221111112235566777777888888887776666644322 22222333344555
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 000051 2119 KGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEAL 2177 (2612)
Q Consensus 2119 ~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~~~a~~aL 2177 (2612)
..+.++++.+|..|+..+..+....+..+..+ -..+..++.|+|..+..-|..+|
T Consensus 294 ~fLss~d~niryvaLr~L~~l~~~~P~~v~~~----n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 294 LFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC----NLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH----HHHHHHHccCCcHhHHHHHHHHh
Confidence 55667889999999999999887665444433 34466778899988877665544
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.72 E-value=0.0011 Score=81.72 Aligned_cols=269 Identities=12% Similarity=0.111 Sum_probs=145.2
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 000051 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2612)
Q Consensus 1346 L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~l 1425 (2612)
+..+++...|+-....+..+.+. ....+ -+.+.+.+-++++ |+-.|-.|+.+++.+. . ...+..+.+.+
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~-~~e~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~---~---~~m~~~l~~~l 144 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCI-AEDVI---IVTSSLTKDMTGK-EDSYRGPAVRALCQIT---D---STMLQAIERYM 144 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTT-SSCGG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHC---C---TTTHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCC-HHHHH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCC---C---HHHHHHHHHHH
Confidence 44567788899888888877765 33333 4678888888887 7899988887666653 2 24566788889
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHh
Q 000051 1426 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2612)
Q Consensus 1426 l~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~ 1505 (2612)
-+++.|.++.||++|.-+.-.+... .++.++.+++.+-+.+.+.+..+...|+.+|..+....+. .+..+++.+.
T Consensus 145 k~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~----a~~kLv~~l~ 219 (355)
T 3tjz_B 145 KQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL----AVSKMISKFT 219 (355)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH----HHHHHHHHHh
Confidence 9999999999999998887777644 4556788889888899999988888888888888765432 2334444433
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCC--h-hHhhHHHHHHhhcCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHH
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN--P-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i~~ivp~Ll~~l~d~~~~~r-~al~~L~~~~~~~~i~~~~l~~iip~L 1581 (2612)
+. .-.++-.+-.- +..+.....+ + .-..+++.+...+...+..+- +|+.++... .+ .....+...+..+
T Consensus 220 ~~-~l~~~~~q~~l---lr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l--~~-~~~~~~~~a~~~L 292 (355)
T 3tjz_B 220 RH-GLKSPFAYCMM---IRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNL--PG-CSAKELAPAVSVL 292 (355)
T ss_dssp SS-CCSCHHHHHHH---HHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------CCCTH
T ss_pred cC-CCcChHHHHHH---HHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc--cC-CCHHHHHHHHHHH
Confidence 21 11133333332 3333333222 2 236778888888887777766 777777642 11 1222233345556
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000051 1582 HRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2612)
Q Consensus 1582 ~~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL 1643 (2612)
...+.++++++|..|...+..+... .|+.+.. .-..+..++.|++..++..|+..|
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~--~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMK--HPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHH--CcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 6677778889999998888777663 3333333 344556777888877776666554
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.35 E-value=0.21 Score=65.30 Aligned_cols=323 Identities=16% Similarity=0.140 Sum_probs=188.7
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc-
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR- 1412 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~-~~~~~R~~Al~al~~L~~~~~~- 1412 (2612)
..+.|+.+.+.+.++.-...||.|..+|..+++........ .-++.+...++++ .|...-..++..+..+...-+.
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 46788888888888877889999999999998765543322 2244444455432 3554444555555443321110
Q ss_pred ---------------cchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHh---H---HhHHHHHHhhhc
Q 000051 1413 ---------------LFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V---KLVLPSLLKGLE 1468 (2612)
Q Consensus 1413 ---------------~~~~~v---~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~---v---~~ilp~Ll~~L~ 1468 (2612)
.+...+ .+-++.++.++...+-.+|-.+.+.+..+...-+... + ..-+|.|++.|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 011111 1468889999999999999999999999987654432 2 245788999999
Q ss_pred CCChhhHHHHHHHHHHHHhhCchh-hhhhhchhHHHHhhhhcCCCH----HHHHHHHHHHHHHHhhcC-Ch-hH--hhHH
Q 000051 1469 DKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-NP-EI--ASLV 1539 (2612)
Q Consensus 1469 ~~~w~~r~~a~~~L~~ia~~~p~~-l~~~L~~ivp~L~~~L~D~~~----~VR~aA~~aL~~l~~~~~-~~-~i--~~iv 1539 (2612)
++.--.|..++.+|..++.+.++. -.-.+...++.++.++..... .|..-|...+..+.+.-. |. .+ ...+
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 988889999999999999876652 222356778888888765443 677778888888876521 11 22 2345
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhccccccCChhhHhhH--HHHHHHhhcCCCHHH-HHHHHHHHHHHhhccCCCCcchhh
Q 000051 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL--VPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPY 1616 (2612)
Q Consensus 1540 p~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~~~~l~~i--ip~L~~~l~d~s~~v-r~~a~~~l~~l~~~~~~~~~l~~~ 1616 (2612)
|.|...+..+.+.. +. .+.....+ +-.+.+.+-.++... ..... -..+++
T Consensus 257 ~~L~~LL~~~~~~~-----------~W---~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~n--Q~~~~~----------- 309 (651)
T 3grl_A 257 QRMKPWFEVGDENS-----------GW---SAQKVTNLHLMLQLVRVLVSPNNPPGATSSC--QKAMFQ----------- 309 (651)
T ss_dssp GGGGGGGCCCSCSS-----------CC---CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH--HHHHHH-----------
T ss_pred HHHHHHhCCCcccc-----------cc---HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHH-----------
Confidence 55555543221100 00 00000000 001111111111000 00000 011111
Q ss_pred HhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCC--C-----------CchhhHHHHHHHhccCCCHHHHHHHHHH
Q 000051 1617 IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGE--E-----------NFPDLVSWLLDALKSDNSNVERSGAAQG 1681 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~--~~~VR~~A~~aL~~L~~~~g~--~-----------~~~~ll~~L~~~L~~~~~~~~R~~aa~~ 1681 (2612)
..+++.+.+++..+ ...+|..|..+++.++..... + ..+.++..++..+.+......|..++.+
T Consensus 310 -~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~c 388 (651)
T 3grl_A 310 -CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYC 388 (651)
T ss_dssp -TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHH
Confidence 22555566665543 578999999999998874321 1 1234555555556555667788888888
Q ss_pred HHHHHH
Q 000051 1682 LSEVLA 1687 (2612)
Q Consensus 1682 L~~i~~ 1687 (2612)
+...+.
T Consensus 389 l~ay~~ 394 (651)
T 3grl_A 389 FQCFLY 394 (651)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776653
No 101
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.26 E-value=0.069 Score=69.72 Aligned_cols=338 Identities=16% Similarity=0.137 Sum_probs=155.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhchhhhhhHHHHHhhhcCC--CChhHHHHHHHHHHHHHHhhChhhHHHhH
Q 000051 1887 MNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFM 1963 (2612)
Q Consensus 1887 l~~L~~~L~-~~~~~~R~~A~~aL~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vR~~a~~aL~~li~~~~~~~l~~~l 1963 (2612)
++.+..++. +.-.+.|..|...|..+.+.....+-..-+|.+...|++ .|.++-..++..|..++.....+...
T Consensus 23 I~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~--- 99 (651)
T 3grl_A 23 IQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE--- 99 (651)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc---
Confidence 344444454 556788999999999988776555544445555555543 45666666666665554322111000
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHhccCCCc--chHHHHHHHHHhhhcccccccccc
Q 000051 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHIL 2041 (2612)
Q Consensus 1964 ~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~--~~~al~~L~~il~~~~~~vlp~Li 2041 (2612)
. . ......+.+..--+.+.. -.+-++.|++.|++++. +-+++..|..++..+...+
T Consensus 100 -~--------~--~~~~~~~~~~~~~d~f~~------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~----- 157 (651)
T 3grl_A 100 -E--------N--STRQSEDLGSQFTEIFIK------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQV----- 157 (651)
T ss_dssp -------------------CHHHHHHHHHHH------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHH-----
T ss_pred -c--------c--ccccchHHHHHHHHHHHc------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 0 0 000000001110111111 12345666666654432 2334444444442221100
Q ss_pred hhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhccc-c---cHHHHHHHH
Q 000051 2042 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-E---GVESLVSEL 2117 (2612)
Q Consensus 2042 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~-~---~l~~ll~~L 2117 (2612)
=.++.. -+.-++.|++.|.|..+.+|..++..+..+...-.+ . .+...++.|
T Consensus 158 ---------------Q~~Il~---------~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L 213 (651)
T 3grl_A 158 ---------------QQIILV---------SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL 213 (651)
T ss_dssp ---------------HHHHHH---------STTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred ---------------HHHHHh---------CcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence 000000 124567777778777788888777777766653221 0 012223344
Q ss_pred HhhcCCCC----hhHHHHHHHHHHHHHHhcccchhccHH--HHHHHHHHHhcCCC------hhHHHHHHHHHHHHHhhcC
Q 000051 2118 LKGVGDNQ----ASIRRSSAYLIGYFYKNSKLYLVDEAP--NMISTLIVLLSDSD------STTVAAAWEALSRVVASVP 2185 (2612)
Q Consensus 2118 l~~l~~~~----~~vR~~A~~~L~~l~~~~~~~~~~~~~--~il~~L~~ll~d~d------~~V~~~a~~aL~~l~~~~~ 2185 (2612)
...++.+. ..+-.-++.++..+.+..+.. ..++. ..++.|..+++..+ +....+.+.++.-+---..
T Consensus 214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~ 292 (651)
T 3grl_A 214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292 (651)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 44443322 245556666777776543210 01111 12334445554222 1233332222222111111
Q ss_pred ccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCchhhHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhcChh
Q 000051 2186 KEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQ 2263 (2612)
Q Consensus 2186 ~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l~~ilp~l~~~L~~~--~~~~r~~aa~~L~~li~~~~~~ 2263 (2612)
+..-..-.+.-+..+. -..+++.+++-+... ...++..|..++++++...+
T Consensus 293 ~~~~~~~t~~nQ~~~~-------------------------~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-- 345 (651)
T 3grl_A 293 PNNPPGATSSCQKAMF-------------------------QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-- 345 (651)
T ss_dssp TTSCHHHHHHHHHHHH-------------------------HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--
T ss_pred CCCCCCCCHHHHHHHH-------------------------HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--
Confidence 1000000000000000 011455566655544 67788999999999986543
Q ss_pred hhhhch-----------hhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHH
Q 000051 2264 SLKEFV-----------IPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2264 ~l~p~v-----------~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~ 2301 (2612)
..+.++ +.++..|+..+.+....++|.+++.++..++.
T Consensus 346 ~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 346 VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 222222 22333355556677788999999999987663
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.24 E-value=5.5e-05 Score=80.68 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhc
Q 000051 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2612)
Q Consensus 1419 ~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~ 1498 (2612)
..-++.+...+.|+++.+|..|..++..+.. . . +|.|++.|.+++|.+|..++.+|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456777888899999999888777654421 1 1 4788888889999999999999887642 3
Q ss_pred hhHHHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHH
Q 000051 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2612)
Q Consensus 1499 ~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r 1554 (2612)
..++.|...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 457778888899999999999999998863 2456677777777766665
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.24 E-value=0.65 Score=63.81 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=59.4
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhH-HHHhhhhcCCCHHHHHHHHHHHHHHHhhcCChh--
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-- 1534 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~iv-p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-- 1534 (2612)
.++| +++.|++.+...|..||.+|..++......-.-.-.+++ +.+..++.|++.+||.+|..+|++++..-+...
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 556788888999999999999988642221111123454 456678999999999999999999986543211
Q ss_pred -H--hhHHHHHHhhc
Q 000051 1535 -I--ASLVPTLLMGL 1546 (2612)
Q Consensus 1535 -i--~~ivp~Ll~~l 1546 (2612)
+ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 1 34666666554
No 104
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.15 E-value=5.9e-05 Score=88.48 Aligned_cols=186 Identities=19% Similarity=0.179 Sum_probs=109.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 000051 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2612)
Q Consensus 1344 ~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp 1423 (2612)
..+..++++.+|+.++..+ +.. .+...++|+ ++.+|..+... ++. +
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~-------L~~----------~ 101 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYR-------LPR----------E 101 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTT-------SCS----------G
T ss_pred HHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHH-------CCH----------H
Confidence 3344556677888777743 211 134455666 78888777653 221 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHH
Q 000051 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2612)
Q Consensus 1424 ~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~ 1503 (2612)
.+...++|+++.||..+...+ +. +.+...+.+++|.+|..+..-+ + + +.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~ 150 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------P-------P---GR 150 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------C-------G---GG
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------C-------H---HH
Confidence 345567888888888765532 21 1233345677888887776521 1 1 12
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHH
Q 000051 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2612)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~ 1582 (2612)
+..+++|+++.||..+...+ . .+.+...+.|+++.+|. +...+ . .+.+.
T Consensus 151 l~~l~~D~d~~VR~~aa~~l-------~-------~~ll~~ll~D~d~~VR~aaa~~l---------~-------~~~L~ 200 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRL-------P-------EESLGLMTQDPEPEVRRIVASRL---------R-------GDDLL 200 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------C-------GGGGGGSTTCSSHHHHHHHHHHC---------C-------GGGGG
T ss_pred HHHHHcCCCHHHHHHHHHcC-------C-------HHHHHHHHcCCCHHHHHHHHHhC---------C-------HHHHH
Confidence 44567888888888887751 1 12344566788887773 33321 1 13345
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000051 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2612)
Q Consensus 1583 ~~l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~ 1644 (2612)
..+.|++|.||..+...++ .+.+..+ .|+++.||..+...||
T Consensus 201 ~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 201 ELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 5677888888887766532 1334444 7888888888877655
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.14 E-value=0.014 Score=66.15 Aligned_cols=186 Identities=16% Similarity=0.188 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCCh
Q 000051 2345 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 2424 (2612)
Q Consensus 2345 ~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~ 2424 (2612)
+.+..|+..|.+.+..-+.+.+. +.++-.++....+ .+.+..+...+..++.+.+|..|+.+||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 45677888887776543222221 2223333333321 466777777888888899999999999988 3 33
Q ss_pred hHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHh-hCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhhh
Q 000051 2425 GQLADLLQELLNLASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 2503 (2612)
Q Consensus 2425 ~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~ 2503 (2612)
...-++++.. -..++.|.++.-+..++...+. ..|+. .++.+.....++++.+|+.|+...-.. +
T Consensus 102 ~~~L~~ir~~--va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW---~ 167 (240)
T 3l9t_A 102 KEILIFMRDE--VSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIW---T 167 (240)
T ss_dssp HHHHHHHHHT--GGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSG---G
T ss_pred HHHHHHHHHH--hCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHH---h
Confidence 3444444432 2357889888888888888876 66653 245666778899999999998876431 1
Q ss_pred hccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhhhHhH
Q 000051 2504 IQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVAL 2557 (2612)
Q Consensus 2504 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~ 2557 (2612)
. . |.....+..+++.+-...+|++.-||+...+.|+.+++.+|+.|+.++..
T Consensus 168 ~-~-~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 168 N-R-PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp G-S-TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred c-c-chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 1 1 11123455666666667789999999999999999999999999887763
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.05 E-value=0.00019 Score=84.18 Aligned_cols=185 Identities=17% Similarity=0.088 Sum_probs=122.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHh
Q 000051 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2612)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~~~~~r~-al~~L~~~~~~~~i~~~~l~~iip~L~~~ 1584 (2612)
.+++|+++.||..+...+. ...+...+.|++..+|. +...+ .. +.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L---------~~-------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRL---------PR-------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTS---------CS-------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHC---------CH-------HHHHHH
Confidence 4579999999999988541 12355667899999984 33221 11 245667
Q ss_pred hcCCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHH
Q 000051 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2612)
Q Consensus 1585 l~d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~ 1664 (2612)
++|+++.||..++..+ .. +.+..++.|+++.||..++..+ +.+ ++.
T Consensus 107 l~D~d~~VR~~aA~~l-------~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~~--------~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL------------EQLEQMAADRDYLVRAYVVQRI-------PPG--------RLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT------------GGGGGGTTCSSHHHHHHHHHHS-------CGG--------GGG
T ss_pred HcCCCHHHHHHHHHhC-------CH------------HHHHHHHcCCCHHHHHHHHHhc-------CHH--------HHH
Confidence 8899999999887732 11 1234557899999999998742 221 223
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHh
Q 000051 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2612)
Q Consensus 1665 ~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~ 1744 (2612)
.+.++.+..+|..++.. .+.. .+...+.++++.||..+...+ + .+.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------R----------GDDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHH
Confidence 44456677788877664 2322 233456889999998887642 1 135666
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHH
Q 000051 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2612)
Q Consensus 1745 ~L~d~~~~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~ 1800 (2612)
.+.|++..||..+...+. .+.+... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 788999999999877643 2444445 8999999998765443
No 107
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.97 E-value=0.00078 Score=71.64 Aligned_cols=119 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~ 1457 (2612)
.-.+.+...++++ ++.+|..|+.+++.+ +. + -++.++..+.|+++.||..|..++..+. -.
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~-------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQ-------DE 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T----THHHHHHGGGCSCHHHHHHHHHHHGGGC-------SH
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcC-------CH
Confidence 3456677777776 788888887766543 21 1 1478888999999999999998887663 24
Q ss_pred hHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHH
Q 000051 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2612)
Q Consensus 1458 ~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2612)
..+|.|+..+.+++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|..+|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 567888888899999999999999998752 3567888889999999999999999864
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.79 E-value=0.64 Score=58.00 Aligned_cols=297 Identities=11% Similarity=0.094 Sum_probs=186.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2240 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2240 ~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
.|+...++.|+.-|....+..+ + ....-+..++.+..|. +..+|..|+..|..++.. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-~----l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-E----LADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-G----GHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-h----hHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4678899999999999887765 2 2233344556777775 788999999988887743 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCC-cChHHHHHHHHHHHH
Q 000051 2320 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS-VSSAVKIRVYSVLKD 2398 (2612)
Q Consensus 2320 k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~-~~~~~~~~i~~~L~~ 2398 (2612)
+.|+..+..-+...-.+|-.+...+| ...+..+...+..++..+|+.+++.|.+-+...+.. +..+.-.-|...+.+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888889999999998877554 345677777777778999999999999888877654 455666777788888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCChhH---HHHHHHHHHhh---cCCCCchhhHHHHHHHHHHHhhCCccccCCchhHH
Q 000051 2399 LVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLLQELLNL---ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2399 ~l~~~~~~vr~~aa~~Lg~L~~~~~~~~---~~~~l~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
.+.|-...--.....+|+.+-..-.... +.+++.+.... ....+.......+.++..++......+-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 8888766655667777766544333222 33333332111 12223333334555666665443333322333333
Q ss_pred HHHHHHhhhccCC-----hhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCH-----------------
Q 000051 2473 ILDRLKSSLKDEK-----FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSS----------------- 2530 (2612)
Q Consensus 2473 i~~~l~~~~~~~~-----~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~----------------- 2530 (2612)
+..-+...+..=. +..+-.-+.++..+..+++..+. ....+..+...|..-+.-...
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~-a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEK-LETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccch-HHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 3333333333211 12566677777777777653211 112233333344432221111
Q ss_pred HHHHHHHHHHHHHHhhCchhh
Q 000051 2531 EVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2531 ~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
.--..-+.++.+++++.|+..
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 112667888999999988765
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.53 E-value=0.022 Score=66.29 Aligned_cols=205 Identities=15% Similarity=0.045 Sum_probs=123.6
Q ss_pred HHHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhcHH--hH--HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhh
Q 000051 1421 MLPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~--~VR~aa~~al~~i~~~l~~~--~v--~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~ 1494 (2612)
.+|.++..+..+++ .++..|..++..+...-++. .+ ...+|.|++.|.+++...+..|+.+|..++...++.-.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46778888876666 88877777887766433222 22 34689999999999999999999999999986554311
Q ss_pred h-hhchhHHHHhhhhcC-CCHHHHHHHHHHHHHHHhhcCChh--HhhHHHHHHhhcCCCChhHHHHHHHHHhccccccCC
Q 000051 1495 Q-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPE--IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2612)
Q Consensus 1495 ~-~L~~ivp~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~--i~~ivp~Ll~~l~d~~~~~r~al~~L~~~~~~~~i~ 1570 (2612)
. .-...+|.|+++|.+ .+.++++.|..+|-.++..-.++. .+.-+|.|.+.+..|.. ...+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~s---------------G~~~ 153 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFS---------------GWPE 153 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHH---------------CCCG
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhcccc---------------CCcc
Confidence 1 124678999999974 689999999999999986433221 12334444443221100 0000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhccCC-CCcchhhHhhhHHHHHHHhc------CCCHHHHHHHHHHH
Q 000051 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAI 1643 (2612)
Q Consensus 1571 ~~~l~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~~~~-~~~l~~~l~~ll~~L~~~L~------d~~~~VR~~A~~aL 1643 (2612)
... .+.....+.+++..|..+|.+++..-.+ .+.+..+ +.+++.|..++. +.+...++.|..+|
T Consensus 154 ~~~--------~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~-~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L 224 (233)
T 3tt9_A 154 GDY--------PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC-DGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224 (233)
T ss_dssp GGC--------CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTS-TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccc--------ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence 000 0000113568888899999988763101 1112211 234444444443 23557778888887
Q ss_pred HHHHhh
Q 000051 1644 GSLIRG 1649 (2612)
Q Consensus 1644 ~~L~~~ 1649 (2612)
..|...
T Consensus 225 ~nLs~~ 230 (233)
T 3tt9_A 225 HNLSYQ 230 (233)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 776543
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.22 E-value=0.052 Score=61.61 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=109.9
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhChhhHHh
Q 000051 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2612)
Q Consensus 1617 l~~ll~~L~~~L~d~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~L~~~L~~~~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2612)
.+.+++....+.+++..+||..|+..||.+ . ...++++.+...+..+....+|..++..+++++...+.+ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 456788888888999999999999988876 2 247788888776777888889988889999988766665 3
Q ss_pred HhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHhh
Q 000051 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2612)
Q Consensus 1697 llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~~VR~~Al~al~~lv~~~~ 1769 (2612)
.++.+...+.+++..+|..+.....-.+.. ..|......++|.+-....|++.+||.+...+++.+.+..+
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 566777888999999999888765433322 23445556688888889999999999999999888665443
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.81 E-value=0.11 Score=60.23 Aligned_cols=185 Identities=13% Similarity=0.071 Sum_probs=115.3
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHhccCC-h-----hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcCh
Q 000051 2315 QTTFIKCLQDSTR--TVRSSAALALGKLSALSTR-V-----DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSS 2386 (2612)
Q Consensus 2315 ~~~~~k~L~d~~~--~vR~~Aa~aLg~L~~~~~~-~-----~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~ 2386 (2612)
++.+++.|+.+++ .++..|+.++..+....+. - ...+|.|+..+++++..+|+.+..||..+......+-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566778887766 8999999999988643221 1 134799999999888999999999999996531111000
Q ss_pred HHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhCChhH--HHHHHHHHHhhcC----------------CCCchhhH
Q 000051 2387 AVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQ--LADLLQELLNLAS----------------SPSWAARH 2447 (2612)
Q Consensus 2387 ~~~~~i~~~L~~~l~-~~~~~vr~~aa~~Lg~L~~~~~~~~--~~~~l~~ll~~~~----------------~~~~~~~~ 2447 (2612)
-.....++.|.+++. +.+..++..++.+|..|+....... ...-++.+...+. ..+..++.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 111223555666775 4688999999999999986433211 1112222221110 12334566
Q ss_pred HHHHHHHHHHhhC---CccccC-CchhHHHHHHHHhhhccC--ChhHHHhHHHHHHHH
Q 000051 2448 GSVLVFATFLRHN---PSAISM-SPLFLSILDRLKSSLKDE--KFPLREASTKALGRL 2499 (2612)
Q Consensus 2448 ~~~~~l~~~l~~~---p~~~~~-~~~~~~i~~~l~~~~~~~--~~~ir~~a~~alg~l 2499 (2612)
.+..+|..+.... ...+-+ .+..+.++.++.....+. +...++++++++..+
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 6777777775432 222322 345677777777765543 346788999988876
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.67 E-value=5.1 Score=50.15 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHHHHHhhcCCCCh
Q 000051 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2612)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip~ll~~L~d~~~ 1751 (2612)
...+.-++|-|......+.. .-++.+..++..|.+.+..+|..++..+..+|.. .++.++...+.+.|.-++.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccch
Confidence 44566667766666655432 2345667788888999999998776666665543 4678888888888887777
Q ss_pred hHHHHHHHHHHHHHHHhhhchhhhhHHHHhhccCCCchHHHHHHHHHHHHHHHHh
Q 000051 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2612)
Q Consensus 1752 ~VR~~Al~al~~lv~~~~~~~i~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~ 1806 (2612)
.-+...-.++..+++.-+...+..++..+..+ +..+|..++..+..-++.+
T Consensus 115 ~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~----~e~~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAKGTLGGLFSQILQG----EDIVRERAIKFLSTKLKTL 165 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHccc----chHHHHHHHHHHHHHHhhc
Confidence 76777777777777665555555566666653 3578888888877766543
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.52 E-value=3.7 Score=50.83 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCch
Q 000051 2365 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWA 2444 (2612)
Q Consensus 2365 vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~ 2444 (2612)
.|-..|.-..+++-+-.. ...+.+++.+.+...+++..+|.-+++.|+..+....+ .+...+..+...+.+.+..
T Consensus 41 ~Kl~~L~q~~EL~l~~dp----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHH
Confidence 455555556665433222 23344444444555566666777777776666654332 2223333222222234444
Q ss_pred hhHHHHHHHHHHHh-------hCCcc-ccCCchhHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc--CC---
Q 000051 2445 ARHGSVLVFATFLR-------HNPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--GP--- 2508 (2612)
Q Consensus 2445 ~~~~~~~~l~~~l~-------~~p~~-~~~~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~~--- 2508 (2612)
+...++.+...+.+ .+|.. ......|+. +-..+...+.+++..+|-.++.-+-.++..+... ++
T Consensus 116 V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p 195 (386)
T 3o2t_A 116 VVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIP 195 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccc
Confidence 44444544443331 11110 000123333 3455666677888999999998888877655321 11
Q ss_pred -------------CCc---------hhhHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCchhhhhhHhHHHHHHHh
Q 000051 2509 -------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAE 2564 (2612)
Q Consensus 2509 -------------~~~---------~~l~~~l~~~~~~l~~--~~~~vr~~a~~~l~~~a~~~~~~v~~~l~~l~p~l~~ 2564 (2612)
.++ .....++..++..+.+ .++-.=.+++..|..+++..|... ..++|.+..
T Consensus 196 ~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~----~rIl~aL~~ 271 (386)
T 3o2t_A 196 RRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM----SEVIQAYET 271 (386)
T ss_dssp GGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH----HHHHHHHHH
T ss_pred cccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHh
Confidence 111 1123455666665543 233344678888999999988764 334444332
Q ss_pred hh--------cCCcchhhhhHHHHHHHHhcccccchhhh-HhhhhhccCC
Q 000051 2565 CL--------KDGSTPVRLAAERCAVHAFQLTRGIIYSR-STKIYNRLGC 2605 (2612)
Q Consensus 2565 ~~--------~~~~~~vk~aae~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 2605 (2612)
-. +-..--|+...--.|+++++-+-..++.+ .+.+|.++|-
T Consensus 272 l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~ 321 (386)
T 3o2t_A 272 LHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGT 321 (386)
T ss_dssp HHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcc
Confidence 11 11122266777789999999887776666 9999998885
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.85 E-value=5.8 Score=44.07 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCCCC---chhhHHHHH
Q 000051 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLL 1663 (2612)
Q Consensus 1590 ~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d~---~~~VR~~A~~aL~~L~~~~g~~~---~~~ll~~L~ 1663 (2612)
...-....+.+..+... ..=.+.||+.+++|.+..++-.. ...+|+.|+..++.++..+|..+ .+.+...+.
T Consensus 60 l~~L~~lm~~~~ALl~N--~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~ 137 (196)
T 4atg_A 60 AEVLKTCIALYFSLIKN--KHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLK 137 (196)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHH
Confidence 44444445555555552 22457899999999999987532 22899999999999999998753 244555555
Q ss_pred HHhccC-CCHHHHHHHHHHHHHHHHHhChhhHHhHh-HHH
Q 000051 1664 DALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDI 1701 (2612)
Q Consensus 1664 ~~L~~~-~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-p~l 1701 (2612)
+.+.+. .+....-||..++.. +|.+..+.++ |.+
T Consensus 138 k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l 173 (196)
T 4atg_A 138 GVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHA 173 (196)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHH
T ss_pred HHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCH
Confidence 555443 455667788877664 4666554433 554
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.49 E-value=26 Score=43.43 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChhHH
Q 000051 2091 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 2170 (2612)
Q Consensus 2091 r~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~V~ 2170 (2612)
+-..+.-...++..-+..-++.+++.++....+.+..+|...+..+...|.. -..+.+.++..|..++.|.|+.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444444334556788899999988888999999999988888763 234568888888888999999999
Q ss_pred HHHHHHHHHHHh
Q 000051 2171 AAAWEALSRVVA 2182 (2612)
Q Consensus 2171 ~~a~~aL~~l~~ 2182 (2612)
+.+..+.+.+..
T Consensus 118 K~~I~~~tslYp 129 (386)
T 3o2t_A 118 KKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887653
No 116
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.37 E-value=2 Score=47.66 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=88.0
Q ss_pred cCchhhHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCC-C-CHhHHHHHHHHH
Q 000051 2225 KALQPLLPIFLQGLIS------GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-F-PWQVKSAILSTL 2296 (2612)
Q Consensus 2225 ~~l~~ilp~l~~~L~~------~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~-~-~~~vk~~al~~L 2296 (2612)
.|+++++|.|.+-+.+ .+...-...+.....++++.. -.+.||+.+++++++..+-.+ . +..+|..|...+
T Consensus 36 ~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL 114 (196)
T 4atg_A 36 SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIV 114 (196)
T ss_dssp SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 4677888887754433 245555566777777887655 568999999999988765432 2 237999999999
Q ss_pred HHHHHhcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000051 2297 SIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 2340 (2612)
Q Consensus 2297 ~~L~~~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L 2340 (2612)
+.++++.+......-|.+..++.+.+.|+ +....--|..+|..+
T Consensus 115 ~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 115 KYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 99999998877777899999999999997 677777777777766
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.06 E-value=5 Score=57.73 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHHHhh-------cHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHH
Q 000051 1432 QVVAVREAAECAARAMMSQL-------SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2612)
Q Consensus 1432 ~~~~VR~aa~~al~~i~~~l-------~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L 1504 (2612)
.++.+|+.++-+++.++... +.+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 45677887777777666532 222345555556666666676777888889998863 3344555
Q ss_pred hhhhc-------CCCHHHHHHHHHHHHHHHhhcCChhHhhHHHHHHhhcCCC--ChhHH-HHHHHHHhccccccCChhhH
Q 000051 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2612)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~ivp~Ll~~l~d~--~~~~r-~al~~L~~~~~~~~i~~~~l 1574 (2612)
.+++. +...+||.+|++||..+.... | ..+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 224689999999999887532 2 23444555555443 34566 455555431 1333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000051 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2612)
Q Consensus 1575 ~~iip~L~~~l~d~s~~vr~~a~~~l~~l~~~ 1606 (2612)
..+.......-.+++.+++......|.++++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 32333333333556777777777777776653
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.67 E-value=36 Score=39.72 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhcCCChh
Q 000051 2089 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 2168 (2612)
Q Consensus 2089 ~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~d~d~~ 2168 (2612)
+.+-..+.-...++..-+...++.+++.++....+.+..+|...+..+...|..- ..+.+.+++.|..+++|.|+.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 4555555555555444455678999999999888888999999999888888542 357788899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000051 2169 TVAAAWEALSRVVA 2182 (2612)
Q Consensus 2169 V~~~a~~aL~~l~~ 2182 (2612)
|.+.+..+.+.+..
T Consensus 106 V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 106 VIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887764
No 119
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=86.41 E-value=7.7 Score=44.97 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHH-HHHHHHHHhhCCccccCCchhHH
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGS-VLVFATFLRHNPSAISMSPLFLS 2472 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~l~~~l~~~p~~~~~~~~~~~ 2472 (2612)
+.+..+..+...+.|-.|...+....+...++.+ +.+..++. .-++|..--.. ...++.+++..|...
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-~~~~~~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~~-------- 132 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHI-PFLEELIV--TKSWWDSVDSIVPTFLGDIFLKHPELI-------- 132 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-HHHHHHHT--SSCCHHHHHHHTTTHHHHHHHHCGGGG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHc--cCCChHHHHHhhHHHHHHHHHHCHHHH--------
Confidence 3455566666667888888777765554544433 24445544 24566543322 234455666666532
Q ss_pred HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhh
Q 000051 2473 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 2552 (2612)
Q Consensus 2473 i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~ 2552 (2612)
.+.+...+.++++.+|+.|+.++ +.+.... .....+..+...+.|++.=||++...+|+.+++++|+.+.
T Consensus 133 -~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~------d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 133 -SAYIPKWIASDNIWLQRAAILFQ---LKYKQKM------DEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp -GGTHHHHHHSSCHHHHHHHHHTT---TTCGGGC------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHH---HHHHhCC------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 23456677889999999998764 2222111 2334455555667899999999999999999999999999
Q ss_pred hhHhH
Q 000051 2553 VHVAL 2557 (2612)
Q Consensus 2553 ~~l~~ 2557 (2612)
+++..
T Consensus 203 ~fl~~ 207 (232)
T 3jxy_A 203 EYVQN 207 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=85.42 E-value=40 Score=46.35 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=139.5
Q ss_pred HHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcC---CCHHHHHHHHHHHHHHHhhcCC
Q 000051 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1456 v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D---~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
|+.++|.++.++.+++-.....+..+|..+++..|......+|.++..+...|+. ..+-=-.+|.+++..++..+-.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 5677788888888888888888889999999988833333456666666666655 3344345667777777655432
Q ss_pred -hhH----hhHHHHHHhhcCCCChhHH--HHHHHHHhccccccCC-----h--hhH---hhHHHHHHHhh---c------
Q 000051 1533 -PEI----ASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVD-----A--PSL---ALLVPIVHRGL---R------ 1586 (2612)
Q Consensus 1533 -~~i----~~ivp~Ll~~l~d~~~~~r--~al~~L~~~~~~~~i~-----~--~~l---~~iip~L~~~l---~------ 1586 (2612)
+.+ ..++..++..+ |+++-.+ .+++.+.. +...+. . ..+ ....|.+..-+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~--i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVS--IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHH--HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHH--HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 222 22333333332 5544322 22332221 211110 0 110 00011111110 0
Q ss_pred ----CCCHHHHHHHHHHHHHHhhccCCCCcchhhHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhHHH
Q 000051 1587 ----ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661 (2612)
Q Consensus 1587 ----d~s~~vr~~a~~~l~~l~~~~~~~~~l~~~l~~ll~~L~~~L~d-~~~~VR~~A~~aL~~L~~~~g~~~~~~ll~~ 1661 (2612)
|.+.+.+ .++.. + ..+..++..++..+..++.+ .+..+-.....++..+...+.++.++.++..
T Consensus 494 ~~~~d~~~~~~--------~~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k 562 (799)
T 1vsy_4 494 TFRVDDELLNN--------AFKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASL 562 (799)
T ss_dssp SCCCCTTHHHH--------HHHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred cccccHHHHHH--------HHHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111100 01111 1 13445566666667776663 3444445566667777777777777777776
Q ss_pred HHHHhccCCCHHHHHHHHHH----HHHHHHHhChhhHHhHhHHHHHhcc----CC------Chhh--Hh----HHHHHHH
Q 000051 1662 LLDALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCS----HQ------RASV--RD----GYLTLFK 1721 (2612)
Q Consensus 1662 L~~~L~~~~~~~~R~~aa~~----L~~i~~~~g~~~l~~llp~l~~~~~----~~------~~~v--R~----~~~~~l~ 1721 (2612)
+.+...+............- +..++..-+. .+..++|.+...+. +. ..++ |+ -.+.++.
T Consensus 563 ~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~ 641 (799)
T 1vsy_4 563 LNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALN 641 (799)
T ss_dssp HHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHH
Confidence 66655443211100111111 2333333333 56666666653321 11 1111 22 3456777
Q ss_pred HhhhhhccchhhhHHhHHHHHHhhc
Q 000051 1722 YLPRSLGVQFQNYLQQVLPAILDGL 1746 (2612)
Q Consensus 1722 ~L~~~~g~~f~p~l~~iip~ll~~L 1746 (2612)
.+....|+.+.+|-.+++..+-..+
T Consensus 642 ~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 642 DVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHccHHHHHHHHHHHH
Confidence 7777778888888877777665554
No 121
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.50 E-value=68 Score=37.41 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCc
Q 000051 2364 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 2443 (2612)
Q Consensus 2364 ~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~ 2443 (2612)
+.|-..|.-.++++-+.. +.+.+++++.+.....+++..+|.-.++.++..+...++ .....++.+...+.+++.
T Consensus 30 ~~kl~~L~qa~el~~~~d----p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC----AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT----GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccC----HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCH
Confidence 455555555566544321 234455555555555566667777777777776655442 333333333232334444
Q ss_pred hhhHHHHHHHHHHHhhCCccccC--------CchhHH---HHHHHHhhhccCChhHHHhHHHHHHHHHhhhhcc--C---
Q 000051 2444 AARHGSVLVFATFLRHNPSAISM--------SPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS--G--- 2507 (2612)
Q Consensus 2444 ~~~~~~~~~l~~~l~~~p~~~~~--------~~~~~~---i~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~--~--- 2507 (2612)
.+...++.+...+.+..-..+.. ...|+. +-..+...+.+++..+|-.++.=+-.++..+... +
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 44445555544443211111110 123333 3455666778888999999998888877654321 1
Q ss_pred ----------CCCch---------hhHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCchhh
Q 000051 2508 ----------PANTT---------VVVDILASVVSALHDD--SSEVRRRALSALKSVAKANPSAI 2551 (2612)
Q Consensus 2508 ----------~~~~~---------~l~~~l~~~~~~l~~~--~~~vr~~a~~~l~~~a~~~~~~v 2551 (2612)
|.++. ....++..++..+.+. ++-.=.+++..|..+++..|...
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~ 249 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFM 249 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHH
Confidence 11111 1223444455443332 44345688888999999988753
No 122
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=84.05 E-value=1.8e+02 Score=41.86 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCChh
Q 000051 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG 2425 (2612)
Q Consensus 2346 ~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~ 2425 (2612)
.+..++.-.-..+++.++.++.........+.... +..+.+.|+..|..++-+.+..--..+...|..|+...|.
T Consensus 397 ~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f----d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~- 471 (1323)
T 3s4w_B 397 ICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF----DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS- 471 (1323)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-
Confidence 33333333333456678888888887777777764 2456788887776665555555556688888888876664
Q ss_pred HHH---HHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHhh
Q 000051 2426 QLA---DLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 2502 (2612)
Q Consensus 2426 ~~~---~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~~ 2502 (2612)
.+. .++..+|....+-+....+..+..|+.+.-..+.. -.....+++--++.+.+.+.+..+++-++.+.-.++.+
T Consensus 472 ~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~-~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~ 550 (1323)
T 3s4w_B 472 AMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPG-TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGI 550 (1323)
T ss_dssp HHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC-cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHH
Confidence 333 35555555544444433334455555443322211 12245678888889999999999988877766666655
Q ss_pred h
Q 000051 2503 Q 2503 (2612)
Q Consensus 2503 ~ 2503 (2612)
-
T Consensus 551 ~ 551 (1323)
T 3s4w_B 551 M 551 (1323)
T ss_dssp T
T ss_pred H
Confidence 4
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.07 E-value=60 Score=46.54 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcC----CChhHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhhhhhhhhhcCCcccccCCCCCcCc
Q 000051 2152 PNMISTLIVLLSD----SDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 2227 (2612)
Q Consensus 2152 ~~il~~L~~ll~d----~d~~V~~~a~~aL~~l~~~~~~~~l~~lv~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~p~~l 2227 (2612)
++++..+..++.. .++.++..++-+++.++...-.. ...|-++.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~-------------------------------~~~c~~~~v 438 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN-------------------------------TVSCPDELL 438 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT-------------------------------CSSCCGGGT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc-------------------------------CCCCCHHHH
Confidence 4667777777754 45678888999999887642110 012333445
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhc------CCCCHhHHHHHHHHHHHHHH
Q 000051 2228 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIG------DRFPWQVKSAILSTLSIIIR 2301 (2612)
Q Consensus 2228 ~~ilp~l~~~L~~~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~------~~~~~~vk~~al~~L~~L~~ 2301 (2612)
.++...+.+++..++.+.+..+..+||.+..- .. +..|.+.+. ...+..++.+|+.+|..+..
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~--------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NS--------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GG--------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hH--------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 66777777788888888888899999987632 11 122233332 11245688889988876653
Q ss_pred hcCCCccCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhc-CCHHHHHHHHHHHHHHH
Q 000051 2302 KGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV-SDAGIREAILTALKGVL 2377 (2612)
Q Consensus 2302 ~~~~~l~p~lpqL~~~~~k~L~d~--~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~-~d~~vr~~~l~AL~~vi 2377 (2612)
. +-..+.+.+++.+.|. +.++|.+|...| +...|. ...+..+...+.. ++..|+..+...|+.+.
T Consensus 508 ~-------~p~~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 508 R-------DPRKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp T-------CHHHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred h-------chHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 2 1135677888888664 899999987655 333343 2356666666643 45666665555555443
No 124
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=82.01 E-value=1e+02 Score=42.28 Aligned_cols=222 Identities=9% Similarity=0.054 Sum_probs=133.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc---hhhhhhHHHHHhhhcCC---CChhHHHHHHHHHHH
Q 000051 1876 PKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKD---PSASRRQGVCIGLSE 1949 (2612)
Q Consensus 1876 ~~~l~~~l~~ll~~L~~~L~~~~~~~R~~A~~aL~~lv~~~~---~~~l~~llp~L~~~L~d---~~~~vR~~a~~aL~~ 1949 (2612)
+...+.++..+.|.+...+-+++......+..++..++--.+ +-++|.++.-+...|.. ..+.-...++.++..
T Consensus 330 ~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~ 409 (799)
T 1vsy_4 330 SFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTR 409 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 345567888888999888999999999999999999988655 66888888888777776 344444455666655
Q ss_pred HHHhhC-hhhHHHhHhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhChhhhh---h-------hHHHHHHhccCCCcc
Q 000051 1950 VMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID---E-------IVPTLLHALEDDQTS 2018 (2612)
Q Consensus 1950 li~~~~-~~~l~~~l~~ll~~l~~~L~D~d~~Vr~~A~~al~~l~~~~g~~~~~---~-------ilp~Ll~~L~~~~~~ 2018 (2612)
++...- ...+..|+..++..+...+.-.|+.-...+...+..+...+.-.... + +.|..-..
T Consensus 410 ~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~------- 482 (799)
T 1vsy_4 410 VIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQH------- 482 (799)
T ss_dssp THHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHH-------
T ss_pred HHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhh-------
Confidence 543322 22456788888888888887778877777888888776654321110 0 01110000
Q ss_pred hHHHHHHHHHhhhcccccccccchhhccCCcchhHHHHHHHHHHHhCCChhhhHhhHHHHHHHhcC-CCCHHHHHHHHHH
Q 000051 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEA 2097 (2612)
Q Consensus 2019 ~~al~~L~~il~~~~~~vlp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~Ll~~L~-~~~~~vr~~a~~a 2097 (2612)
+..+++ ..... +.+-... .-.+++ ......+..++...+..++..+. +.++.+-.....+
T Consensus 483 ---~~~l~~---~~~~~--------~~~~d~~-~~~~~~----~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~ 543 (799)
T 1vsy_4 483 ---FYHIKC---GESSK--------TFRVDDE-LLNNAF----KASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQT 543 (799)
T ss_dssp ---HHHHHT---TCCSS--------SCCCCTT-HHHHHH----HHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHH
T ss_pred ---hhhhcc---ccccc--------cccccHH-HHHHHH----HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 000000 00000 0000000 001111 11245567777777777777775 3344444555667
Q ss_pred HHHhhhhcccccHHHHHHHHHhhcCC
Q 000051 2098 AETVTLVIDEEGVESLVSELLKGVGD 2123 (2612)
Q Consensus 2098 l~~l~~~~~~~~l~~ll~~Ll~~l~~ 2123 (2612)
+..++.+++++-++.++..+.+.+.+
T Consensus 544 ~~~l~~~lS~~if~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 544 TMILQESMDDKIFNYFASLLNRNFWS 569 (799)
T ss_dssp HHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 77778888887777777777776543
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=80.27 E-value=49 Score=41.05 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lpqL~~~~ 2318 (2612)
++......-..-+..+++..++..+.+....+..-+.+.+... +..|-..|+..+. .+..-+.......+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 3433333445668888888888888877777777777777764 6677777776653 223222222233445555556
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhccCC
Q 000051 2319 IKCLQDS-TRTVRSSAALALGKLSALSTR 2346 (2612)
Q Consensus 2319 ~k~L~d~-~~~vR~~Aa~aLg~L~~~~~~ 2346 (2612)
.+....- |..||..|..++..++.+.+.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 5554443 999999999999999877543
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=79.74 E-value=17 Score=41.63 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=93.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHhhCCccccCCchhHHH
Q 000051 2394 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 2473 (2612)
Q Consensus 2394 ~~L~~~l~~~~~~vr~~aa~~Lg~L~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~i 2473 (2612)
.++..+..++.-+.|..+...++...+...++. .+++..++. .-++|..--..+-++..++...|.. +
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-l~~~~~~l~--~~~nWd~~D~~a~~~~~~~~~~~~~---------~ 125 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE-VVAFKAYVP--QKAWWDSVDAWRKFFGSWVALHLTE---------L 125 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-HHHGGGGTT--TTCSHHHHHHHHHHHHHHHHHSGGG---------H
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH-HHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHChHH---------H
Confidence 556666666667788888888887765544432 233343332 2456654432223344455555432 3
Q ss_pred HHHHHhhhccCChhHHHhHHHHHHHHHhhhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCchhhhh
Q 000051 2474 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 2553 (2612)
Q Consensus 2474 ~~~l~~~~~~~~~~ir~~a~~alg~ll~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~l~~~a~~~~~~v~~ 2553 (2612)
.+.+...+.+++..+|+.|+.+. +.+ ... .+....+..+-..++|++.=||++...+|+.+++++|+.+.+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~---l~~-~~~-----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQ---LML-KEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTT---TTC-GGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH---HHH-HHC-----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 55677788999999999998855 222 211 134445555555788999999999999999999999999998
Q ss_pred hH
Q 000051 2554 HV 2555 (2612)
Q Consensus 2554 ~l 2555 (2612)
++
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 127
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=72.86 E-value=2.1e+02 Score=36.34 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHHHHhchh--hhh--hHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000051 1898 SSERRQVAGRALGELVRKLGER--VLP--SIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2612)
Q Consensus 1898 ~~~~R~~A~~aL~~lv~~~~~~--~l~--~llp~L~~~L~d~~~~vR~~a~~aL~~li~ 1952 (2612)
++.+-..|+.=+|++++..+.. +.. ..-..+.+.+.++|++||..|+.++..++.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5667777888889999887654 222 233455677889999999999999988764
No 128
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=70.72 E-value=1.9e+02 Score=34.85 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=55.2
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCccchHHHHHHHHHHhChhhHHHHHHHHHHHc
Q 000051 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR 1853 (2612)
Q Consensus 1774 ~~llp~L~~~l~d~~w~vR~~a~~ll~~ll~~~~~~~~~~~~~~~~ddd~~~~~~~~~~l~~~Lg~~~~~~vl~~L~~~~ 1853 (2612)
+.+...+...+.++|+-+|+.+++++|+++-.-+ . ...+...++. .+.+..+...+
T Consensus 208 d~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~---------------N------~~vM~~Yis~---~~nLkl~M~LL 263 (341)
T 1upk_A 208 DRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRH---------------N------FTIMTKYISK---PENLKLMMNLL 263 (341)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGG---------------G------HHHHHHHTTC---HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCch---------------H------HHHHHHHhCC---HHHHHHHHHHh
Confidence 3456666777889999999999999999984210 0 1122233322 23455555668
Q ss_pred cCCCHHHHHHHHHHHHHHHhcC
Q 000051 1854 SDVSLSVRQAALHVWKTIVANT 1875 (2612)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~l~~~~ 1875 (2612)
.|.+..++-.|.++++-++.+.
T Consensus 264 ~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 264 RDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCS
T ss_pred cCchhchhhhhhhheeeeeeCC
Confidence 9999999999999999999854
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=67.71 E-value=38 Score=38.75 Aligned_cols=140 Identities=7% Similarity=-0.003 Sum_probs=84.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhhhcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 000051 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2612)
Q Consensus 1341 ~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~~ 1420 (2612)
.++..|..++-.+.|..|+..+....+.+.. ..++.+...+....+|........+++.+...-+ ..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-------~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-------TE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-------GG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-------HH
Confidence 4445555555566777776666543322111 3345556666666688766654333333332222 23
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1421 ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
+.+.+.....+++.-+|+.|..+. +..........+++.+-..+.++++.++++....|..++...|+....+
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~f 197 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEEL 197 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 556677888899999998886644 2222222345556655557888889999999999988887776654433
No 130
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=67.47 E-value=2.4e+02 Score=35.49 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=128.2
Q ss_pred CCCcchhhHHHHHHHHhhh--hhCCCCh----h-HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhCcch---hhhhHH
Q 000051 1188 DAGWLGRQGIALALHSAAD--VLRTKDL----P-VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDN---VSLLFP 1257 (2612)
Q Consensus 1188 ~~~~~~R~~~~~al~~~~~--~~~~~~~----~-~i~~~li~~~l~d~~~~VR~~~~~a~~~~i~~~g~~~---~~~Llp 1257 (2612)
+..|.+-+.+...|-.+.. .++.... . .++.-|+ ..+...++.-|......+..+...+...+ .+.+-.
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll-~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLL-ELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHH-HTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478777666666655533 2433211 1 2333343 45667788888887777776666543221 233444
Q ss_pred HHHHHhccCCCChHHhhhHHhHHHHHHHHHhhhhccC-Cc-chHhHHHHHHHhcCCCCHH-HHHHHHhhhHHhHhhhcch
Q 000051 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DP-KVHAVVDKLLDVLNTPSEA-VQRAVSSCLSPLMQSMQDE 1334 (2612)
Q Consensus 1258 ~~~~~l~~~~~~~~~~d~vr~~~i~~l~~La~~l~~~-~~-~~~~i~~~L~~~L~~~~~~-Vq~~~~~~L~~lv~~~~~~ 1334 (2612)
+|..+........... -...++|.+...+... .+ +..-+...++...+.+.-. -....+.|+..++.....-
T Consensus 207 if~~fi~e~e~~nGIa-----eLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L 281 (449)
T 2npp_B 207 IFYRFIYETEHHNGIA-----ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL 281 (449)
T ss_dssp HHHHHHHTCSCCSCHH-----HHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhcccCCCCCHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHh
Confidence 4555543311111000 1223444444332211 11 1111233344555444321 2234556666666554433
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhhCcchhhh--hcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000051 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2612)
Q Consensus 1335 ~~~li~~ll~~L~~~~~~~~R~~Aa~~L~~l~~~lg~~~l~~--~~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~ 1412 (2612)
....+..++..-...+ ......-...|..++..+++..+.. ..++..+..++.+. +..+-+.|+..+..= .+-.
T Consensus 282 ~~~vi~~LLk~WP~tn-s~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~--~i~~ 357 (449)
T 2npp_B 282 TEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNE--YIMS 357 (449)
T ss_dssp HHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCH--HHHH
T ss_pred HHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCH--HHHH
Confidence 3444444443322222 3334455566777777766655531 25777788888887 788877777644221 1111
Q ss_pred cchhhHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Q 000051 1413 LFEPYVIQMLPLLLVAFSDQ-----VVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1413 ~~~~~v~~ilp~ll~~l~D~-----~~~VR~aa~~al~~i~~ 1449 (2612)
.+..+...++|.++..+... +..||..+..+++.+++
T Consensus 358 li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 358 LISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 23445556778777766332 56788888888886654
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=66.02 E-value=2.3e+02 Score=34.09 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-ccc--chhhHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh-
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKL-GRL--FEPYVI---QMLPLLLVAFSDQVVAVREAAECAARAMMSQ- 1450 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~-~~~--~~~~v~---~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~- 1450 (2612)
+++..|...+..= ++..|.-+..+|..+...- +.. ...|+. +++..++.+..+++ +--.+...++.|...
T Consensus 78 dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d--iAl~~G~mLRecir~e 154 (341)
T 1upk_A 78 GLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE--IALNCGIMLRECIRHE 154 (341)
T ss_dssp SHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT--THHHHHHHHHHHHTSH
T ss_pred CHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch--hHhHHHHHHHHHHHhH
Confidence 4555555555544 6888888877777776532 111 122443 67777777776553 333344444444331
Q ss_pred -hcHHhH-HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhC----chhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHH
Q 000051 1451 -LSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2612)
Q Consensus 1451 -l~~~~v-~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~----p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~ 1524 (2612)
+...-. ...+-.+++.++.++..+-..|...+..+.... .+.+...+..++...-+++..++--.|..+.+-||
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 111100 123335667788888888888888887776543 34456667788888888999999999999999998
Q ss_pred HHHhh
Q 000051 1525 QVGSV 1529 (2612)
Q Consensus 1525 ~l~~~ 1529 (2612)
.+.-.
T Consensus 235 elLld 239 (341)
T 1upk_A 235 ELLLD 239 (341)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 88754
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=65.29 E-value=1.1e+02 Score=38.76 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHHHhcCCCCHhHHHHHHHHHH--HHHHhcCCCccCchHHHHHHH
Q 000051 2241 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 2318 (2612)
Q Consensus 2241 ~~~~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~~l~~~~~~~vk~~al~~L~--~L~~~~~~~l~p~lpqL~~~~ 2318 (2612)
++..-...-..-+..+++.+++..+...+..+..-+.+.+... +..|-..|+..+. .+..-+ ..+...+.+.+
T Consensus 296 tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii 370 (449)
T 2npp_B 296 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLI----SDNAAKILPIM 370 (449)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhh
Confidence 3433333445678888888888888877777777777777764 6677777776654 222222 12233444544
Q ss_pred HHHh----cC-CCHHHHHHHHHHHHHHHhccCChhHHHHHHHHh
Q 000051 2319 IKCL----QD-STRTVRSSAALALGKLSALSTRVDPLVGDLLSS 2357 (2612)
Q Consensus 2319 ~k~L----~d-~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~ 2357 (2612)
...| .. -+..||..|..++..++.+.+ .++.++...
T Consensus 371 ~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~---~lf~~c~~~ 411 (449)
T 2npp_B 371 FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ---KLFDDCTQQ 411 (449)
T ss_dssp HHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH---HHHHHHHHH
Confidence 4443 33 288999999999998877553 344444443
No 133
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=62.69 E-value=71 Score=38.33 Aligned_cols=135 Identities=15% Similarity=0.238 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhcChhhhhhchhhhhHHHHH-HhcCC--CCHhHH-HHHHHHHHHHHHhcCCCccCchHHHHHHHH
Q 000051 2244 ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR-IIGDR--FPWQVK-SAILSTLSIIIRKGGIALKPFLPQLQTTFI 2319 (2612)
Q Consensus 2244 ~~r~~aa~~L~~li~~~~~~~l~p~v~~i~~pLi~-~l~~~--~~~~vk-~~al~~L~~L~~~~~~~l~p~lpqL~~~~~ 2319 (2612)
.+|+...+.+...+++.. ..+.....+++||+. +++|- ..++.| ...|.++..++.+.+..+.|.+|.+...+.
T Consensus 44 ~vKkeiLkLiet~i~~~~--d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VF 121 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN--DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 121 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS--CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567778888888887764 233344566777764 45542 223343 457888999999999999999999877665
Q ss_pred HH----hcC---CCHHHHHHHHHHHHHHHhcc---------CChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhc
Q 000051 2320 KC----LQD---STRTVRSSAALALGKLSALS---------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 2380 (2612)
Q Consensus 2320 k~----L~d---~~~~vR~~Aa~aLg~L~~~~---------~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~ 2380 (2612)
.| .++ +.++-|..-.+-|..+...+ +...-++..++-+++.++..+.+..+..+.+++...
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 43 443 36999999888888875432 224556777888888888888888888888888765
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.55 E-value=34 Score=35.97 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=52.3
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v--~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+.++ ++++...|+..+..+...+|..|...+ ...+.-+...+...++.||+.+...+......+
T Consensus 42 ~a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 42 DCLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 6777888888877 899999999999999999998776544 234444444444467788887766666554433
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.08 E-value=71 Score=33.82 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=57.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2612)
+.+..|.+-+.+. |+++...|+..+..+...+|..|...+. .++.-+...+.+ .++.||+.....+.....
T Consensus 48 ~a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 6777888888876 8999999999999999999987765553 566667777764 467899888777777655
Q ss_pred hhc
Q 000051 1450 QLS 1452 (2612)
Q Consensus 1450 ~l~ 1452 (2612)
.+.
T Consensus 127 ~f~ 129 (149)
T 3g2s_A 127 GLP 129 (149)
T ss_dssp HCT
T ss_pred HhC
Confidence 543
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.80 E-value=58 Score=34.47 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=55.8
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2612)
+.+..|.+-++++ |+++...|+..+..+...+|..|...+. .++.-+...+.+ .++.||+.+...+.....
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888876 8999999999999999999987866653 667777766654 367888887666666544
Q ss_pred hh
Q 000051 1450 QL 1451 (2612)
Q Consensus 1450 ~l 1451 (2612)
.+
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.01 E-value=79 Score=33.12 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhc
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 2184 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~d~d~~V~~~a~~aL~~l~~~~ 2184 (2612)
+.+-...+..+.+.+++.++.+...|+.++..+.+++|..+...+ .+++..+..++...++.|+....+.+.......
T Consensus 37 ~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 37 RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 356678888899999999999999999999999999887665433 556666666666678899998888777776554
Q ss_pred Cc
Q 000051 2185 PK 2186 (2612)
Q Consensus 2185 ~~ 2186 (2612)
+.
T Consensus 117 ~~ 118 (140)
T 3ldz_A 117 KN 118 (140)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.36 E-value=49 Score=35.73 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=52.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD-QVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D-~~~~VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+.++ ++++...|+..+..+...+|..|...+. .++.-+...+.. .++.||+.+...+......+
T Consensus 52 eA~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 52 DCLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 5777788888876 8999999999999999999987765443 344444444433 56788888777666554443
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=53.10 E-value=1.9e+02 Score=34.84 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=87.0
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCccCchH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCh------hHHHHHHHHh
Q 000051 2285 PWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRV------DPLVGDLLSS 2357 (2612)
Q Consensus 2285 ~~~vk~~al~~L~~L~~~~~~~l~p~lp-qL~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~------~~~l~~Ll~~ 2357 (2612)
+...+.-++..|..+...-......|+. +=...+++...+.+.....-+..||+.|+.+...+ ..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 3445556666677655533222222321 12446677777778899999999999997652212 3466677777
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHH-----------HHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhCC
Q 000051 2358 LQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR-----------VYSVLKDLVY---HDDDHVRVSAASILGIMSQCME 2423 (2612)
Q Consensus 2358 l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~-----------i~~~L~~~l~---~~~~~vr~~aa~~Lg~L~~~~~ 2423 (2612)
+.+.+..+...+++-|..++.....+. .-+... .|+.|..++. +.+..+...+..+|.++....|
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 776778888888888887776542221 111111 1445556665 4577888888888888777777
Q ss_pred hh
Q 000051 2424 DG 2425 (2612)
Q Consensus 2424 ~~ 2425 (2612)
+.
T Consensus 290 d~ 291 (339)
T 3dad_A 290 DQ 291 (339)
T ss_dssp SH
T ss_pred Ch
Confidence 54
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.66 E-value=1.3e+02 Score=32.37 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=62.0
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHhh
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~d-~d~~V~~~a~~aL~~l~~~ 2183 (2612)
..+....+..|.+.+++.++.+...|+.++..+.++++..+...+ .+++..+..++.. .++.|+..+.+.+......
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999999999886655332 4566666666654 6789999988887777765
Q ss_pred cCc
Q 000051 2184 VPK 2186 (2612)
Q Consensus 2184 ~~~ 2186 (2612)
.+.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 544
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.56 E-value=75 Score=34.54 Aligned_cols=73 Identities=18% Similarity=0.070 Sum_probs=54.8
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcCC------CCHHHHHHHHHHHHHHHH
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSD------QVVAVREAAECAARAMMS 1449 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~D------~~~~VR~aa~~al~~i~~ 1449 (2612)
+.+..|.+-+.+. |+++...|+.++..+...||..|...+. .++.-+...+.. .+..||+.+...+.....
T Consensus 50 ~A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 50 IAVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677788888877 8999999999999999999987775553 456666666642 357888887777666654
Q ss_pred hh
Q 000051 1450 QL 1451 (2612)
Q Consensus 1450 ~l 1451 (2612)
.+
T Consensus 129 ~f 130 (171)
T 1juq_A 129 AL 130 (171)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 142
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=50.96 E-value=1.3e+02 Score=31.07 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHH
Q 000051 2315 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 2394 (2612)
Q Consensus 2315 ~~~~~k~L~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~ 2394 (2612)
....+..|++..+.+...+..|+.+. .+.+.++.-+.+.++...+..|-..+.-+..|+..++......+.+.+..
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~----~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~ 85 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENK----KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD 85 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 33445567766677888777777653 44566777777788777888899999999999998876655667777766
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHHh--hCChh
Q 000051 2395 VLKDLVYHD-DDHVRVSAASILGIMSQ--CMEDG 2425 (2612)
Q Consensus 2395 ~L~~~l~~~-~~~vr~~aa~~Lg~L~~--~~~~~ 2425 (2612)
.+...+..- ++..|....+++...-. ++|++
T Consensus 86 ~l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~~ 119 (132)
T 4flb_A 86 VLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEE 119 (132)
T ss_dssp THHHHHHTTCSTTTHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCCcCHH
Confidence 666555442 55667777777776653 46653
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.83 E-value=4e+02 Score=32.08 Aligned_cols=150 Identities=11% Similarity=0.094 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHH-hH---HhHHHHHHhh
Q 000051 1392 SAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV---KLVLPSLLKG 1466 (2612)
Q Consensus 1392 ~~~~R~~Al~al~~L~~~~~~~~~~~v~-~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~-~v---~~ilp~Ll~~ 1466 (2612)
+...+.-+++-+..+...-......++. +=+..++....+.+.+...-+..|+..+|...... ++ ..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 3445555666555533211122222332 34666667777778888889999999998864443 22 3345555555
Q ss_pred hcCCChhhHHHHHHHHHHHHhhCchhh---hhhhc--------hhHHHHhhhhc---CCCHHHHHHHHHHHHHHHhhcCC
Q 000051 1467 LEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLP--------KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKN 1532 (2612)
Q Consensus 1467 L~~~~w~~r~~a~~~L~~ia~~~p~~l---~~~L~--------~ivp~L~~~L~---D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2612)
+.+....+-+.|+.+|..++...+... ..... ..+..++..|+ ..+.+++..|..-+..+....++
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 666667788889999988876543211 11111 12456666776 56788888888877777766654
Q ss_pred hh-HhhHHHH
Q 000051 1533 PE-IASLVPT 1541 (2612)
Q Consensus 1533 ~~-i~~ivp~ 1541 (2612)
.+ ...+++.
T Consensus 291 ~d~~~di~d~ 300 (339)
T 3dad_A 291 QDSFYDVTDA 300 (339)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 33 3333333
No 144
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.95 E-value=4.2e+02 Score=31.76 Aligned_cols=119 Identities=8% Similarity=0.082 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhch-------hhhhhHHHHH
Q 000051 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGE-------RVLPSIIPIL 1928 (2612)
Q Consensus 1859 ~VR~aA~~~l~~l~~~~~~~l~~~l~~ll~~L~~~L~---~~~~~~R~~A~~aL~~lv~~~~~-------~~l~~llp~L 1928 (2612)
+|-.....++..+-......+..++..++..-+..++ +..++.|..-...|..+...+-+ .....++..+
T Consensus 93 eVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsi 172 (321)
T 1w9c_A 93 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSI 172 (321)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444333333333444444444455566 46899999999999888876533 3455677777
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhCh--hh----HHHhHhHHHHHHHHHhcCC
Q 000051 1929 SRGLKDPSASRRQGVCIGLSEVMASAGK--SQ----LLSFMDELIPTIRTALCDS 1977 (2612)
Q Consensus 1929 ~~~L~d~~~~vR~~a~~aL~~li~~~~~--~~----l~~~l~~ll~~l~~~L~D~ 1977 (2612)
..+.+++.+++-..++..+.+++..... +. ...|+-.++..+...+.|+
T Consensus 173 iWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 173 IWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7889999999988888888887776642 11 2334455555555555555
No 145
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.89 E-value=95 Score=33.22 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=53.4
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHH-HHHHcC---CCCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPL-LLVAFS---DQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~-ll~~l~---D~~~~VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+++..|+++...|+..++.+...+|..|...+. .++.- +...+. ++...||+.+...+......+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 677778888875448999999999999999999987776553 45554 455553 445688888777766654433
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.79 E-value=99 Score=33.60 Aligned_cols=80 Identities=18% Similarity=0.134 Sum_probs=63.6
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhcC------CChhHHHHHHHHHH
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALS 2178 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~d------~d~~V~~~a~~aL~ 2178 (2612)
..+....+..|.+.+++.++.+...|+.++-.+.++++..+...+ .+++..|..++.. .+..|+..+.+.+.
T Consensus 45 ~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999886654332 5677778887752 46799999998888
Q ss_pred HHHhhcCc
Q 000051 2179 RVVASVPK 2186 (2612)
Q Consensus 2179 ~l~~~~~~ 2186 (2612)
......+.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 88776654
No 147
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.68 E-value=2.3e+02 Score=29.89 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=55.3
Q ss_pred HhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhh--chhHHHHhhhhcC------CCHHHHHHHHHHHHHHHh
Q 000051 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGS 1528 (2612)
Q Consensus 1457 ~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L--~~ivp~L~~~L~D------~~~~VR~aA~~aL~~l~~ 1528 (2612)
+..+..+...+.+.+..+...|+.+|..+...+...+...+ ..++..|.+++.+ +++.||..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44455556667778888888899999999888776553322 3455666666654 578999999999999888
Q ss_pred hcCC
Q 000051 1529 VIKN 1532 (2612)
Q Consensus 1529 ~~~~ 1532 (2612)
.+++
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7753
No 148
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=41.51 E-value=1.5e+02 Score=30.46 Aligned_cols=88 Identities=13% Similarity=0.107 Sum_probs=59.0
Q ss_pred hhcHHhHHhHHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhhhchhHHHHhhhhcCCCHHHHHHHHHHHHHHHhh
Q 000051 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2612)
Q Consensus 1450 ~l~~~~v~~ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~L~~ivp~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2612)
.++...++.++|.|+..|+|-+|......+..|..+- ..++|.+.++++..+..-. .+.|..+...
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~ 88 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIMWK---YWVIKLMIPY 88 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGG
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChHHH---HHHHHHHHHc
Confidence 3456677899999999999999999888888776532 4566777777765554433 3345555544
Q ss_pred cCChhHhhHHHHHHhhcCCCCh
Q 000051 1530 IKNPEIASLVPTLLMGLTDPND 1551 (2612)
Q Consensus 1530 ~~~~~i~~ivp~Ll~~l~d~~~ 1551 (2612)
+...-...+.|.|.+....|+.
T Consensus 89 ~~~~~~~~l~~eL~rl~~~pt~ 110 (134)
T 3ut4_A 89 LIYPNKQLVKSELERLSSLEII 110 (134)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCS
T ss_pred CCHHHHHHHHHHHHHHHhCCCc
Confidence 4433446677777777766643
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.12 E-value=1.4e+02 Score=34.12 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQL 1451 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~l 1451 (2612)
+.+..|.+-+.++ |+++...|+.+++.+...+|..|...+. ..+..+...++ ..++.||+.+...+......+
T Consensus 45 ~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 45 YAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 6778888888876 8999999999999999999976655432 33333333332 356778888777666665444
No 150
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.28 E-value=1.2e+02 Score=34.67 Aligned_cols=107 Identities=9% Similarity=-0.022 Sum_probs=63.4
Q ss_pred HHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHHhHHh
Q 000051 1380 AATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2612)
Q Consensus 1380 ~~~L~~~i~~~~~~~~R~~A-l~al~~L~~~~~~~~~~~v~~ilp~ll~~l~D~~~~VR~aa~~al~~i~~~l~~~~v~~ 1458 (2612)
++.+...+....+|.+.... -.+++.+...-+. ...+.+.....|++.-+|+.|...+ +..........
T Consensus 97 l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------~~~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~d~~~ 166 (232)
T 3jxy_A 97 IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------LISAYIPKWIASDNIWLQRAAILFQ---LKYKQKMDEEL 166 (232)
T ss_dssp HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-------GGGGTHHHHHHSSCHHHHHHHHHTT---TTCGGGCCHHH
T ss_pred HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-------HHHHHHHHHhcCCchHHHHHHHHHH---HHHHhCCCHHH
Confidence 34455566556678765533 2233333332221 2445666778888888888876553 22222223345
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHHHhhCchhhhhh
Q 000051 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2612)
Q Consensus 1459 ilp~Ll~~L~~~~w~~r~~a~~~L~~ia~~~p~~l~~~ 1496 (2612)
+++.+...+.++.+.++++...+|..++...|+....+
T Consensus 167 ~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 167 LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 55555566778888888888888888887766654433
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=35.93 E-value=1e+02 Score=32.15 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred hhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHhHHH
Q 000051 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2612)
Q Consensus 1691 ~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~iip 1740 (2612)
.+.+.++++-|.+.+++.++.++--++.++.+++..-.+.|...+..-+.
T Consensus 44 ~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~ 93 (140)
T 1vdy_A 44 VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV 93 (140)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 34568899999999999999999999999999988766666665554333
No 152
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=35.17 E-value=2.4e+02 Score=29.78 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=54.8
Q ss_pred HhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHH--hHHHHHHhhcCC------CChhHHHHHHHHHHHHHH
Q 000051 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLAD------ENESVRDAALGAGHVLVE 1766 (2612)
Q Consensus 1695 ~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~--~iip~ll~~L~d------~~~~VR~~Al~al~~lv~ 1766 (2612)
.+.+..+.+.++++++.+.-.++.++..+...+|..|...+. .++..+.+.+.+ .+..||.-++..+..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 445566777788999999999999999999999998876653 366777766654 356788877766655444
Q ss_pred Hh
Q 000051 1767 HY 1768 (2612)
Q Consensus 1767 ~~ 1768 (2612)
.|
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 44
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.24 E-value=1.2e+02 Score=34.41 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=50.6
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHh
Q 000051 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFS-DQVVAVREAAECAARAMMSQ 1450 (2612)
Q Consensus 1378 ~i~~~L~~~i~~~~~~~~R~~Al~al~~L~~~~~~~~~~~v~--~ilp~ll~~l~-D~~~~VR~aa~~al~~i~~~ 1450 (2612)
+.+..|.+-+.++ |+++..-|+.+++.+...+|..|...+. .++..+...++ ..+..||+.+.+.+......
T Consensus 42 ~a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 42 NAFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 5677788888876 8999999999999999999976755432 24444333333 45678888776666655443
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.90 E-value=4.1e+02 Score=30.13 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHh
Q 000051 2106 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVA 2182 (2612)
Q Consensus 2106 ~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~ 2182 (2612)
++.+-...+..|.+.+++.++.+...|+.++..+.++.|..+-..+ .+++..|..+++ ..+..|++.+.+.+.....
T Consensus 39 ~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 39 GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999886543221 344555555554 4678899998888887776
Q ss_pred hcCc
Q 000051 2183 SVPK 2186 (2612)
Q Consensus 2183 ~~~~ 2186 (2612)
....
T Consensus 119 ~f~~ 122 (226)
T 3zyq_A 119 AFRN 122 (226)
T ss_dssp HTTT
T ss_pred HhCC
Confidence 6544
No 155
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=31.48 E-value=2.5e+02 Score=28.74 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=59.1
Q ss_pred hHhhHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcccccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccc----
Q 000051 2071 HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY---- 2146 (2612)
Q Consensus 2071 ~l~~il~~Ll~~L~~~~~~vr~~a~~al~~l~~~~~~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~---- 2146 (2612)
++...+...++.|+...+.++..+.+|+... .+...++..+.+.++...+..|...++++..++.++...
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~ 78 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAII 78 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHH
Confidence 3445566667778777778888888887543 345667777777787778899999999999999876433
Q ss_pred hhccHHHHHHHHHHHhc
Q 000051 2147 LVDEAPNMISTLIVLLS 2163 (2612)
Q Consensus 2147 ~~~~~~~il~~L~~ll~ 2163 (2612)
+.+.+...++.++....
T Consensus 79 f~~~f~~~l~~~~~~~~ 95 (132)
T 4flb_A 79 FRESFADVLPEAAALVK 95 (132)
T ss_dssp HHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 33334444444444443
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=30.42 E-value=82 Score=32.85 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccHHHHHHHHHHHhc-----CC------ChhHHHHHHHH
Q 000051 2108 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DS------DSTTVAAAWEA 2176 (2612)
Q Consensus 2108 ~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~~~il~~L~~ll~-----d~------d~~V~~~a~~a 2176 (2612)
+.++.+|..|.+.+++.++.+..-|+.+|-.++.+....+...+..-...+-.+.+ |+ ...||..|-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 44688999999999999999999999999999987776655544333332222221 21 14788888888
Q ss_pred HHHHHh
Q 000051 2177 LSRVVA 2182 (2612)
Q Consensus 2177 L~~l~~ 2182 (2612)
+..+..
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 777654
No 157
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=29.28 E-value=16 Score=30.65 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=12.2
Q ss_pred cchhhHHhhhcChhHHH
Q 000051 252 VLPASIKMLKRNPEIIL 268 (2612)
Q Consensus 252 ilP~~eKalLRsPE~~l 268 (2612)
||-.=.-+||||||++=
T Consensus 20 VLNqKk~SLLRsPEVI~ 36 (62)
T 2kw3_C 20 VLNQKRLSLLRSPEVVQ 36 (62)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCHHHHH
Confidence 44444568999999964
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=28.04 E-value=5.1e+02 Score=27.04 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=57.0
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000051 2346 RVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ 2420 (2612)
Q Consensus 2346 ~~~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~Lg~L~~ 2420 (2612)
+...++..+-+.+....+..|-..+.-+-.|+...|......+...+.+.+.......++.+|....+++...-.
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 445666666677777778889999999999999988766555555566666666666688999999999888873
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.81 E-value=5.5e+02 Score=27.19 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=59.5
Q ss_pred cccHHHHHHHHHhhcC-CCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHH-HHHHhc---CCChhHHHHHHHHHHH
Q 000051 2107 EEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMIST-LIVLLS---DSDSTTVAAAWEALSR 2179 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~-~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~-L~~ll~---d~d~~V~~~a~~aL~~ 2179 (2612)
+.+....+..|.+.++ +.++.+...|+.++-.+.+++|..+...+ .+++.. |+.++. +++..|++.+.+.+..
T Consensus 48 ~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 48 EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 4567888899999997 58999999999999999999987665433 456666 666663 3456888888877777
Q ss_pred HHhhcC
Q 000051 2180 VVASVP 2185 (2612)
Q Consensus 2180 l~~~~~ 2185 (2612)
......
T Consensus 128 W~~~f~ 133 (157)
T 1elk_A 128 WADAFR 133 (157)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 665443
No 160
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=26.13 E-value=8.5e+02 Score=29.97 Aligned_cols=209 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHhhCC---
Q 000051 2348 DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS-AASILGIMSQCME--- 2423 (2612)
Q Consensus 2348 ~~~l~~Ll~~l~~~d~~vr~~~l~AL~~vi~~~g~~~~~~~~~~i~~~L~~~l~~~~~~vr~~-aa~~Lg~L~~~~~--- 2423 (2612)
..++..|+..++++|+.-|+.+-..|..+..+....- .-.+..|-+.+.+.....+.-.-.+ ..+.+|.+.....
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R-~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLR-AYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Q ss_pred hhHHHHHHHH-HHhhcCCCCchhhHHHH-HHHHHHHhhCCccccCCchhHHHHHHHHhhhccCChhHHHhHHHHHHHHHh
Q 000051 2424 DGQLADLLQE-LLNLASSPSWAARHGSV-LVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 2501 (2612)
Q Consensus 2424 ~~~~~~~l~~-ll~~~~~~~~~~~~~~~-~~l~~~l~~~p~~~~~~~~~~~i~~~l~~~~~~~~~~ir~~a~~alg~ll~ 2501 (2612)
.++-..++.. ++.-...+....-+.-. .++..++...| .+.+.++..+.+++-..+..-.---+.-+..++.
T Consensus 252 Keehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp------~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe 325 (392)
T 2jak_A 252 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS------TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 325 (392)
T ss_dssp CHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG------GGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc------hhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Q ss_pred hhhccCCCCchhhHHHHHHHHhhcCCCCHHHHHHHHHH-----HHHHHhhCchhhhhhHhHHHHHHHhhhcC
Q 000051 2502 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSA-----LKSVAKANPSAIMVHVALFGPALAECLKD 2568 (2612)
Q Consensus 2502 ~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~vr~~a~~~-----l~~~a~~~~~~v~~~l~~l~p~l~~~~~~ 2568 (2612)
..... ++.+...++...+.+++++.+..|-..|+.. +-.+...+...+-|. +.|+|+.+.+.
T Consensus 326 ~~~~~--~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~ilPi---i~~~L~~~s~~ 392 (392)
T 2jak_A 326 VIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPI---MFPSLYRNSKT 392 (392)
T ss_dssp TCCHH--HHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGGCHHHHHHHHHTHHHHTTT---SCC--------
T ss_pred hCCHH--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCcHHHHHHHHhhhccchhh---hhHHHHHHhcC
No 161
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=25.91 E-value=3.2e+02 Score=28.19 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=35.3
Q ss_pred HHHhChhhHHhHhHHHHHhccCCChhhHhHHHHHHHHhhhhhccchhhhHHh
Q 000051 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2612)
Q Consensus 1686 ~~~~g~~~l~~llp~l~~~~~~~~~~vR~~~~~~l~~L~~~~g~~f~p~l~~ 1737 (2612)
+...|.+.+.+++|.++..++|.+|.+-..+...|... |..+.|++..
T Consensus 21 L~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~----~~~l~p~I~~ 68 (134)
T 3ut4_A 21 LCKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLH----QSIAMPHILT 68 (134)
T ss_dssp HTTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHT----HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHc----cHhhHHHHHH
Confidence 34567788899999999999999999987777776653 3344444444
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.14 E-value=3.5e+02 Score=30.57 Aligned_cols=79 Identities=9% Similarity=0.041 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcccchhccH--HHHHHHHHHHhc-CCChhHHHHHHHHHHHHHhh
Q 000051 2107 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 2183 (2612)
Q Consensus 2107 ~~~l~~ll~~Ll~~l~~~~~~vR~~A~~~L~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~d~~V~~~a~~aL~~l~~~ 2183 (2612)
+.+..+.+..|.+.+++.++.+...|+.++..+.++.+..+-..+ .+++..|..++. ..+..|+..+.+.+......
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999999876553322 345555555554 45788998888777777655
Q ss_pred cC
Q 000051 2184 VP 2185 (2612)
Q Consensus 2184 ~~ 2185 (2612)
..
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 44
Done!