Query 000052
Match_columns 2592
No_of_seqs 484 out of 2190
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 15:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1789 Endocytosis protein RM 100.0 0E+00 0E+00 4794.9 143.3 2216 13-2574 2-2234(2235)
2 KOG1789 Endocytosis protein RM 100.0 2E-102 4E-107 958.7 48.7 922 907-2198 1167-2192(2235)
3 COG0484 DnaJ DnaJ-class molecu 99.5 2.2E-14 4.9E-19 175.8 6.3 69 1502-1612 3-74 (371)
4 KOG0717 Molecular chaperone (D 99.5 2.2E-14 4.7E-19 175.1 5.2 111 1503-1649 8-126 (508)
5 KOG0713 Molecular chaperone (D 99.4 4.6E-13 9.9E-18 160.5 5.4 70 1501-1612 14-86 (336)
6 KOG0712 Molecular chaperone (D 99.3 1.9E-12 4E-17 157.3 4.4 65 1504-1610 5-69 (337)
7 PRK14296 chaperone protein Dna 99.2 2E-11 4.4E-16 153.5 6.1 68 1501-1610 2-71 (372)
8 PRK14288 chaperone protein Dna 99.1 2.8E-11 6.1E-16 152.1 5.9 66 1503-1610 3-71 (369)
9 PF14237 DUF4339: Domain of un 99.1 2.8E-11 6.1E-16 108.5 3.6 45 1173-1218 1-45 (45)
10 PTZ00037 DnaJ_C chaperone prot 99.1 4.5E-11 9.8E-16 151.9 6.6 69 1499-1610 24-92 (421)
11 PRK14286 chaperone protein Dna 99.1 7.8E-11 1.7E-15 148.3 5.8 69 1500-1610 1-72 (372)
12 PRK14279 chaperone protein Dna 99.0 1.4E-10 3.1E-15 146.8 5.8 66 1502-1609 8-76 (392)
13 PRK14287 chaperone protein Dna 99.0 1.6E-10 3.4E-15 145.6 5.8 67 1502-1610 3-71 (371)
14 PRK14276 chaperone protein Dna 99.0 2.2E-10 4.9E-15 144.7 6.2 67 1502-1610 3-71 (380)
15 PRK14282 chaperone protein Dna 99.0 2.7E-10 5.9E-15 143.5 6.1 67 1502-1610 3-73 (369)
16 PRK14280 chaperone protein Dna 99.0 3.1E-10 6.7E-15 143.2 6.0 67 1502-1610 3-71 (376)
17 PRK14299 chaperone protein Dna 99.0 3.4E-10 7.5E-15 138.4 6.0 67 1502-1610 3-71 (291)
18 PRK14301 chaperone protein Dna 99.0 3.9E-10 8.5E-15 142.1 6.4 68 1501-1610 2-72 (373)
19 PRK14297 chaperone protein Dna 99.0 4.1E-10 8.9E-15 142.3 6.6 66 1503-1610 4-72 (380)
20 PRK14285 chaperone protein Dna 99.0 4.3E-10 9.4E-15 141.4 6.6 66 1503-1610 3-71 (365)
21 PRK14283 chaperone protein Dna 99.0 3.5E-10 7.7E-15 142.8 5.8 67 1502-1610 4-72 (378)
22 PRK14298 chaperone protein Dna 99.0 4E-10 8.6E-15 142.2 6.0 67 1502-1610 4-72 (377)
23 PRK14294 chaperone protein Dna 99.0 3.9E-10 8.6E-15 141.9 5.9 68 1501-1610 2-72 (366)
24 PRK14277 chaperone protein Dna 99.0 5.3E-10 1.2E-14 141.6 6.0 66 1503-1610 5-73 (386)
25 PRK14278 chaperone protein Dna 98.9 6.1E-10 1.3E-14 140.7 5.5 66 1503-1610 3-70 (378)
26 KOG0716 Molecular chaperone (D 98.9 8.8E-10 1.9E-14 129.1 6.2 67 1502-1610 30-99 (279)
27 PRK10767 chaperone protein Dna 98.9 7.7E-10 1.7E-14 139.6 6.2 68 1501-1610 2-72 (371)
28 PRK14291 chaperone protein Dna 98.9 8.7E-10 1.9E-14 139.5 6.3 66 1503-1610 3-70 (382)
29 PRK14284 chaperone protein Dna 98.9 9E-10 1.9E-14 139.8 6.1 65 1504-1610 2-69 (391)
30 PRK14281 chaperone protein Dna 98.9 1.3E-09 2.9E-14 138.4 6.3 66 1503-1610 3-71 (397)
31 PRK14295 chaperone protein Dna 98.9 1.4E-09 3.1E-14 137.8 6.3 56 1502-1582 8-66 (389)
32 PRK14289 chaperone protein Dna 98.8 2.5E-09 5.5E-14 135.6 5.9 67 1502-1610 4-73 (386)
33 KOG0718 Molecular chaperone (D 98.8 3.9E-09 8.4E-14 129.9 6.3 69 1500-1610 6-80 (546)
34 PHA03102 Small T antigen; Revi 98.8 6.1E-09 1.3E-13 115.6 7.1 55 1502-1582 4-60 (153)
35 PRK10266 curved DNA-binding pr 98.8 3.7E-09 8.1E-14 130.3 5.6 66 1502-1609 3-70 (306)
36 PRK14290 chaperone protein Dna 98.8 4.4E-09 9.6E-14 132.5 6.4 66 1503-1610 3-72 (365)
37 PRK14300 chaperone protein Dna 98.8 4.4E-09 9.4E-14 132.8 6.2 66 1503-1610 3-70 (372)
38 PTZ00100 DnaJ chaperone protei 98.8 2.2E-08 4.8E-13 106.2 10.3 99 1455-1579 15-115 (116)
39 KOG0691 Molecular chaperone (D 98.8 4.1E-09 9E-14 127.6 5.4 56 1502-1582 4-62 (296)
40 PRK14292 chaperone protein Dna 98.8 6.1E-09 1.3E-13 131.6 6.7 65 1504-1610 3-69 (371)
41 TIGR02349 DnaJ_bact chaperone 98.8 5.5E-09 1.2E-13 131.2 6.2 65 1504-1610 1-67 (354)
42 PTZ00341 Ring-infected erythro 98.8 6.6E-09 1.4E-13 137.2 6.6 68 1501-1610 571-640 (1136)
43 smart00271 DnaJ DnaJ molecular 98.7 1.6E-08 3.4E-13 95.3 6.7 53 1504-1581 2-58 (60)
44 cd06257 DnaJ DnaJ domain or J- 98.7 1.6E-08 3.4E-13 93.5 6.5 52 1504-1580 1-55 (55)
45 PRK14293 chaperone protein Dna 98.7 9.3E-09 2E-13 130.0 6.0 66 1503-1610 3-70 (374)
46 KOG0715 Molecular chaperone (D 98.7 9E-09 2E-13 125.5 5.3 56 1502-1582 42-99 (288)
47 PF00226 DnaJ: DnaJ domain; I 98.7 8E-09 1.7E-13 98.8 3.6 54 1504-1582 1-58 (64)
48 KOG0719 Molecular chaperone (D 98.7 1.6E-08 3.5E-13 115.9 5.4 55 1503-1582 14-73 (264)
49 KOG0721 Molecular chaperone (D 98.7 2.7E-08 6E-13 113.6 6.9 56 1502-1582 98-156 (230)
50 PRK09430 djlA Dna-J like membr 98.7 8.7E-08 1.9E-12 116.1 11.4 91 1459-1581 152-263 (267)
51 PLN03200 cellulose synthase-in 98.6 0.00077 1.7E-08 98.3 49.9 316 2027-2475 422-746 (2102)
52 TIGR03835 termin_org_DnaJ term 98.4 1.7E-07 3.6E-12 122.2 5.7 66 1503-1610 2-69 (871)
53 KOG0624 dsRNA-activated protei 98.4 3.1E-07 6.7E-12 110.0 5.9 65 1503-1592 394-464 (504)
54 KOG0722 Molecular chaperone (D 98.4 1.5E-07 3.3E-12 108.6 2.9 56 1502-1582 32-89 (329)
55 COG2214 CbpA DnaJ-class molecu 98.4 3.4E-07 7.4E-12 105.3 5.8 56 1502-1582 5-64 (237)
56 PRK05014 hscB co-chaperone Hsc 98.1 2.6E-06 5.7E-11 97.2 5.9 56 1504-1582 2-65 (171)
57 KOG0720 Molecular chaperone (D 98.1 1.3E-06 2.7E-11 108.8 3.4 63 1502-1589 234-298 (490)
58 PHA02624 large T antigen; Prov 98.1 2.8E-06 6.1E-11 110.6 6.6 56 1502-1583 10-67 (647)
59 PRK01356 hscB co-chaperone Hsc 98.1 3.2E-06 6.9E-11 96.1 4.9 56 1504-1582 3-64 (166)
60 PRK03578 hscB co-chaperone Hsc 98.0 6.2E-06 1.3E-10 94.5 5.7 57 1503-1582 6-70 (176)
61 PRK00294 hscB co-chaperone Hsc 98.0 5.4E-06 1.2E-10 94.7 5.0 57 1503-1582 4-68 (173)
62 KOG0714 Molecular chaperone (D 97.9 6.1E-06 1.3E-10 99.6 4.1 65 1503-1609 3-71 (306)
63 KOG0550 Molecular chaperone (D 97.9 1.3E-05 2.8E-10 99.0 6.0 62 1503-1589 373-438 (486)
64 PLN03200 cellulose synthase-in 97.9 0.0077 1.7E-07 88.5 33.9 141 2027-2171 165-314 (2102)
65 COG5407 SEC63 Preprotein trans 97.8 1.5E-05 3.3E-10 98.3 4.3 55 1503-1582 98-160 (610)
66 PF05804 KAP: Kinesin-associat 97.7 0.011 2.3E-07 80.6 28.2 397 1642-2193 264-674 (708)
67 COG5269 ZUO1 Ribosome-associat 97.5 0.0002 4.3E-09 84.0 7.4 59 1502-1582 42-105 (379)
68 TIGR00714 hscB Fe-S protein as 97.5 9.9E-05 2.1E-09 83.5 4.9 44 1539-1582 2-53 (157)
69 KOG1150 Predicted molecular ch 97.2 0.00035 7.6E-09 79.3 4.9 54 1504-1582 54-111 (250)
70 PF05804 KAP: Kinesin-associat 97.0 0.077 1.7E-06 72.6 25.4 387 2039-2540 278-697 (708)
71 PRK01773 hscB co-chaperone Hsc 96.7 0.0015 3.3E-08 75.1 4.7 56 1504-1582 3-66 (173)
72 KOG0723 Molecular chaperone (D 96.5 0.0057 1.2E-07 64.1 6.7 59 1497-1581 50-108 (112)
73 PF02213 GYF: GYF domain; Int 96.0 0.0053 1.1E-07 58.5 3.1 49 1172-1220 1-50 (57)
74 cd00072 GYF GYF domain: contai 95.5 0.017 3.8E-07 55.1 4.5 50 1172-1221 2-52 (57)
75 KOG0568 Molecular chaperone (D 95.4 0.027 6E-07 65.3 6.5 55 1502-1581 46-103 (342)
76 KOG4224 Armadillo repeat prote 93.6 3.2 6.9E-05 52.3 18.4 136 2037-2179 319-456 (550)
77 KOG0166 Karyopherin (importin) 92.3 43 0.00093 45.2 27.0 139 2026-2172 254-396 (514)
78 smart00444 GYF Contains conser 92.0 0.22 4.8E-06 47.6 4.6 50 1172-1221 1-50 (56)
79 cd00020 ARM Armadillo/beta-cat 90.8 1.4 3.1E-05 46.0 9.7 110 2051-2168 7-119 (120)
80 PF04826 Arm_2: Armadillo-like 90.0 5.5 0.00012 49.2 15.1 171 1095-1331 15-186 (254)
81 cd00020 ARM Armadillo/beta-cat 89.7 4.5 9.7E-05 42.3 12.3 98 2334-2475 2-102 (120)
82 KOG0166 Karyopherin (importin) 89.1 53 0.0011 44.4 23.6 279 2097-2513 110-396 (514)
83 COG1076 DjlA DnaJ-domain-conta 87.8 0.41 9E-06 55.5 3.4 51 1503-1578 113-173 (174)
84 PF10508 Proteasom_PSMB: Prote 85.3 6.5 0.00014 53.0 12.9 139 2027-2174 95-235 (503)
85 PF03656 Pam16: Pam16; InterP 85.3 1.9 4.1E-05 47.9 6.5 57 1499-1581 54-110 (127)
86 PF06371 Drf_GBD: Diaphanous G 83.8 3 6.5E-05 48.2 7.7 87 1662-1753 100-186 (187)
87 PF06017 Myosin_TH1: Myosin ta 83.4 5.4 0.00012 47.4 9.7 89 292-381 61-155 (199)
88 KOG4224 Armadillo repeat prote 82.1 58 0.0012 41.8 17.7 308 2067-2521 139-457 (550)
89 PF10508 Proteasom_PSMB: Prote 81.9 14 0.0003 50.0 13.8 118 2026-2149 136-256 (503)
90 cd00256 VATPase_H VATPase_H, r 79.2 1.1E+02 0.0023 41.0 20.0 287 2027-2352 72-409 (429)
91 KOG0431 Auxilin-like protein a 74.2 3 6.5E-05 55.2 4.2 39 1539-1577 399-447 (453)
92 PF04826 Arm_2: Armadillo-like 72.7 21 0.00046 44.2 10.7 115 2027-2148 72-187 (254)
93 PF06025 DUF913: Domain of Unk 72.7 34 0.00074 44.8 13.0 164 1112-1343 3-174 (379)
94 cd01216 Fe65 Fe65 Phosphotyros 71.9 14 0.0003 41.1 8.0 78 135-221 36-114 (123)
95 KOG4199 Uncharacterized conser 71.8 1E+02 0.0022 39.6 15.7 62 2109-2170 256-317 (461)
96 PF06017 Myosin_TH1: Myosin ta 71.8 7.4 0.00016 46.3 6.3 87 20-116 50-143 (199)
97 KOG2160 Armadillo/beta-catenin 71.6 27 0.00059 44.8 11.3 120 2045-2169 118-240 (342)
98 PF11841 DUF3361: Domain of un 69.4 63 0.0014 37.7 12.6 151 1127-1350 4-154 (160)
99 KOG4199 Uncharacterized conser 68.3 41 0.00089 42.8 11.5 132 1096-1327 245-378 (461)
100 PF12348 CLASP_N: CLASP N term 67.9 56 0.0012 39.1 12.7 201 498-734 23-227 (228)
101 cd00934 PTB Phosphotyrosine-bi 67.7 17 0.00037 39.1 7.5 78 135-220 38-117 (123)
102 smart00462 PTB Phosphotyrosine 67.4 18 0.00038 39.7 7.7 78 135-220 40-119 (134)
103 PF00514 Arm: Armadillo/beta-c 66.0 5.9 0.00013 35.1 3.0 39 1269-1307 2-40 (41)
104 cd01203 DOK_PTB Downstream of 65.7 20 0.00043 38.8 7.2 68 140-221 22-93 (104)
105 KOG2734 Uncharacterized conser 63.8 27 0.00058 45.7 9.1 127 2035-2168 109-254 (536)
106 PF00640 PID: Phosphotyrosine 63.0 29 0.00064 38.2 8.4 107 103-220 20-128 (140)
107 PF03224 V-ATPase_H_N: V-ATPas 57.4 32 0.0007 43.6 8.5 133 2027-2163 168-308 (312)
108 PF13446 RPT: A repeated domai 56.7 18 0.00038 35.3 4.7 49 1499-1580 1-49 (62)
109 PF05536 Neurochondrin: Neuroc 54.6 95 0.0021 42.7 12.6 93 2069-2170 72-169 (543)
110 PF02174 IRS: PTB domain (IRS- 50.6 49 0.0011 35.4 7.2 75 134-222 17-95 (100)
111 smart00185 ARM Armadillo/beta- 50.4 17 0.00037 31.3 3.2 37 1271-1307 4-40 (41)
112 PF15277 Sec3-PIP2_bind: Exocy 47.6 20 0.00044 37.8 3.8 77 33-115 1-87 (91)
113 PF08416 PTB: Phosphotyrosine- 46.6 37 0.0008 38.2 5.8 87 134-225 34-124 (131)
114 KOG3192 Mitochondrial J-type c 46.3 23 0.0005 40.7 4.1 44 1539-1582 21-72 (168)
115 KOG2171 Karyopherin (importin) 44.6 1.4E+03 0.03 34.3 27.9 370 2019-2511 17-462 (1075)
116 PF03224 V-ATPase_H_N: V-ATPas 41.2 3.9E+02 0.0085 34.0 14.4 97 1699-1817 167-269 (312)
117 PF08045 CDC14: Cell division 40.7 37 0.00081 42.2 5.1 76 1073-1148 114-190 (257)
118 cd00824 PTBI IRS-like phosphot 38.7 89 0.0019 34.1 6.9 73 138-224 20-96 (104)
119 PF00514 Arm: Armadillo/beta-c 36.5 71 0.0015 28.3 4.9 39 2126-2168 2-40 (41)
120 PF06371 Drf_GBD: Diaphanous G 36.4 71 0.0015 37.0 6.4 55 498-552 132-186 (187)
121 KOG1862 GYF domain containing 35.9 37 0.00081 47.6 4.6 46 1169-1214 201-246 (673)
122 COG5064 SRP1 Karyopherin (impo 33.6 1.2E+03 0.026 30.6 16.0 79 2069-2148 342-426 (526)
123 PF04858 TH1: TH1 protein; In 33.1 4.5E+02 0.0098 36.8 13.7 167 2023-2197 378-565 (584)
124 COG1076 DjlA DnaJ-domain-conta 32.8 38 0.00083 39.6 3.4 41 1541-1581 16-64 (174)
125 cd00256 VATPase_H VATPase_H, r 32.7 1.4E+03 0.031 31.0 17.7 144 2287-2476 140-288 (429)
126 KOG2160 Armadillo/beta-catenin 32.6 1.8E+02 0.0039 37.8 9.3 67 2110-2183 98-164 (342)
127 KOG2759 Vacuolar H+-ATPase V1 31.0 1.5E+03 0.032 30.6 17.4 296 2027-2353 84-423 (442)
128 cd01273 CED-6 CED-6 Phosphotyr 29.0 1.7E+02 0.0036 33.4 7.5 35 136-170 52-86 (142)
129 cd01210 EPS8 Epidermal growth 28.4 1.4E+02 0.0029 33.8 6.4 82 133-219 35-120 (127)
130 PF09380 FERM_C: FERM C-termin 27.0 84 0.0018 32.6 4.4 55 39-103 8-63 (90)
131 PF08167 RIX1: rRNA processing 26.7 91 0.002 36.2 5.1 62 1240-1312 84-147 (165)
132 PF05536 Neurochondrin: Neuroc 26.7 1.3E+02 0.0028 41.4 7.2 90 2033-2125 80-169 (543)
133 KOG1222 Kinesin associated pro 26.6 2E+02 0.0044 38.3 8.2 68 2325-2434 372-439 (791)
134 cd01202 FRS2 Fibroblast growth 26.4 1.4E+02 0.003 32.5 5.7 82 126-223 8-93 (102)
135 cd01267 CED6_AIDA1b Phosphotyr 25.6 1.8E+02 0.004 32.5 7.0 33 138-170 44-76 (132)
136 PF08045 CDC14: Cell division 25.2 2.6E+02 0.0057 35.1 8.8 107 1220-1350 83-194 (257)
137 cd00836 FERM_C FERM_C domain. 24.9 1.3E+02 0.0027 31.6 5.2 58 36-103 15-72 (92)
138 KOG1824 TATA-binding protein-i 24.6 2.5E+02 0.0055 40.4 9.0 127 527-677 696-824 (1233)
139 KOG0168 Putative ubiquitin fus 23.7 6.6E+02 0.014 36.3 12.5 198 1067-1327 226-432 (1051)
140 KOG2023 Nuclear transport rece 23.6 2.2E+02 0.0048 39.5 8.1 103 2292-2436 213-315 (885)
141 PF11701 UNC45-central: Myosin 23.5 1.6E+02 0.0035 34.0 6.2 98 1664-1769 34-132 (157)
142 PF05918 API5: Apoptosis inhib 23.0 2.2E+02 0.0048 39.3 8.2 254 2105-2432 50-322 (556)
143 cd01271 Fe65_C Fe65 C-terminal 22.0 2.4E+02 0.0053 31.8 6.8 92 106-220 20-114 (124)
144 KOG3442 Uncharacterized conser 21.9 1.5E+02 0.0033 33.1 5.2 41 1498-1563 54-94 (132)
145 COG4687 Uncharacterized protei 20.5 1.1E+02 0.0025 33.5 3.8 84 25-115 10-96 (122)
No 1
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=4794.86 Aligned_cols=2216 Identities=33% Similarity=0.531 Sum_probs=2038.4
Q ss_pred CCCCCCCccEEEEEEEeecccccccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCC---CCcEEEEEee
Q 000052 13 HPPPEETEYLARYLVVKHSWRGRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDN---ANEFNISVRT 89 (2592)
Q Consensus 13 ~~~~~~~~~~a~y~vtKhSWrGkYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~---~~eF~i~~rk 89 (2592)
...++||+|+|||+|||||||||||||||||+.+|+||||+||+|||||.| +||++++|.++.+++ ++||+|++|+
T Consensus 2 ~~~~~e~~~~a~ylv~khsw~g~ykri~~i~s~~i~t~~pntl~itn~~~~-~~f~~~~pl~~~~~~~s~~~e~~i~vr~ 80 (2235)
T KOG1789|consen 2 AQFCSENRDIACYLVTKHSWKGKYKRVFSIGTLAITTYNPNTLEITNQWLY-EDFLSVKPLRNGGSNDSKQDEYKIHVRN 80 (2235)
T ss_pred CcccccchhhhheeeeecccccceeEEEEecccceEeecCcceeeechhhh-hcccccCcccCCCCccccCceeEEEEec
Confidence 357899999999999999999999999999999999999999999999999 899999998766543 3599999999
Q ss_pred cCCCcccceeeehhhhhHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCC
Q 000052 90 DGRGKFKAFKFSSRFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDM 169 (2592)
Q Consensus 90 ~~k~K~~~mkFSs~~Ra~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm 169 (2592)
+ ||++.|||||++|++|||+++|+ +..+++++|.+++++++|..|+|.+|.||-. ++|.-+|.+|||+|
T Consensus 81 ~--gk~~~m~fss~~~~~ilt~~l~~--~~~~~~~~f~~l~~~~~~~~w~~~~~~it~~-------~~~~~~~~~d~r~~ 149 (2235)
T KOG1789|consen 81 R--GKNNDMRFSSDYTTDILTHCLQF--STKFADKNFEPLTVTAFKQSWSDRRIPVTLR-------ANASCLEQIDNRGV 149 (2235)
T ss_pred C--CccccccccccchHHHHHHHHHh--hhhccccccceEEEeecccccccccceeEEE-------ecCcchheecccCc
Confidence 6 57999999999999999999655 4788899999999999999999888888754 56788888888888
Q ss_pred CccceeEeccccCCCC-CCCcEEEeeccCCCccccccCCCCChHHHHHHHHHHHhhhcCeEEEecCCCCCCHHHHHHHHH
Q 000052 170 DSPAIVLLSDAYGKRS-ETGGFVLCPLYGRKSKAFQAAPGTTNSAIVSSLTKTAKSMVGLSLSVDSSQPLSVAEYIKRRA 248 (2592)
Q Consensus 170 ~~~~i~~l~d~~~~~~-~~~gfvl~~~~g~~~r~~l~~~~~~~~~ii~~i~~~A~~~~G~~i~~~~~~~it~~~~~~~R~ 248 (2592)
.+++|..++|.|-+|. +.-||++|++||+++|.|.++ .++++|+++|.+.|++++|+-+.++++ .++.++|+..|+
T Consensus 150 ~~~~~~~~~~~~~~k~~d~~g~~~~~~~~~~~~~~~a~--s~n~~~v~~~~~~a~~~igi~~~i~~~-ql~~~~~~~tr~ 226 (2235)
T KOG1789|consen 150 VVQSYPYKNIRSIGKVSDCPGGFVVDVGEHRRRHMFAS--SNNEELVKEIRRLASDNIGIIVPIAKE-QLTLEDFMRTRL 226 (2235)
T ss_pred cccceeeechhhhccccCCCCeeEecccchhhhhHhhc--cCcHHHHHHHHHHhhhceeEEEEcchh-hhhhHHHHHHHH
Confidence 8888888888774444 777888999999998866554 589999999999999999999999985 788899999999
Q ss_pred hhhcC-CCCccccceeEEEeeccccCcccccccccccCCCCCCCCCCCcceEEEEeccceeeeecCCccceEEeeeccce
Q 000052 249 KEAVG-ADETPCGGWSVTRLRSAAHGTLNVSGLSLGIGPKGGLGEHGGAVSRQLILTRVSLVERRPDNYEAVIVRPLSAV 327 (2592)
Q Consensus 249 ~~~~~-~~~ts~~ef~V~k~~~~~~~~~~~~~~~~~~~pr~~~~~h~~~v~R~L~LT~~~LvERdp~tY~vv~~rpL~~i 327 (2592)
|+.+. +++||.+||+|+||+ |+..-||+|+||||++||||||-+||+||++|||+.|
T Consensus 227 ~~~~~~~e~t~~~~~~is~~~----------------------~~~~mpv~~~l~ls~~~~ier~~~~y~vi~~~pl~~i 284 (2235)
T KOG1789|consen 227 GLCSRDEELTSYAEFKISKIT----------------------RRNEMPVRRLLCLSETCIIERDLATYAVICATPLKHI 284 (2235)
T ss_pred hhhhcccccCCcceEEeeeec----------------------ccccccHHHHHHHhHhHHhhhhccceeEEEecchhhH
Confidence 88766 557999999999984 2356799999999999999999999999999999999
Q ss_pred eEeeecCCCCceEEEEecCCCcceeeccCchhHHHHHHHHHHHhhCCCCeeeecccCCCCCcCCCCCcccccccccCCCC
Q 000052 328 SSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAVRDVLQTEGHYPVPVLPRLTMPGHRIDPPCGVVHMQVRKQRPV 407 (2592)
Q Consensus 328 ~aLVR~~~dpQ~f~IEf~dG~~~r~Y~s~~RDsLLAslLD~~ra~Gn~~V~V~~~~t~rG~r~~p~~~~~~~~~~p~~~~ 407 (2592)
.||||+++|||+|+|||.||| .+.|..+.||-.+++++|++|++||+.+.|.. ||+
T Consensus 285 ~~lvr~~~~pq~f~ie~~~g~-~~~~~~~~~~l~~~s~~~~i~~~~~~~~~i~g------h~~----------------- 340 (2235)
T KOG1789|consen 285 VCLVRSEKDPQQFIVEYENGD-GRAYVAAERDLILASLLDGIRASGNNEVFVCG------HRF----------------- 340 (2235)
T ss_pred HHHHhcccCchheEEEecCCC-cceeecccchhhhhhccCccCCCCCceEEEec------chh-----------------
Confidence 999999999999999999998 99999999999999999999999999999864 443
Q ss_pred CChhhHHHHHHHHHHHhhhhhhhcCCCCCchHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHhCCCCCCCCCCCCC
Q 000052 408 ADMESTSMHLKHLAAVAKDAVAESGQVSGSRAKLWRRIREFNACIPYSGVPPSVEVPEVTLMALITMLPSTPNLPPESPP 487 (2592)
Q Consensus 408 ~d~E~es~~Lk~l~~~~k~~~~~~g~~p~~~~~~~~~v~~FNAnIpYsGl~~~~~~~e~~~~al~~~l~~~~~l~~~~~~ 487 (2592)
.|-|.-+.|+++|++.+|+++..||..|+.++++|++||||||||||||++++ +.+|+.+|++..+++.+++++.+.+|
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~r~~~~ir~fna~ipysg~~~~-~~~e~~~~~~~~~~~~~~~~~v~~~~ 419 (2235)
T KOG1789|consen 341 ERNLRVIPFSTNLDEDSESQCMKHIIAPPPGLRRCDLIRRFNANVPYSGLRFS-KSHEGFFSENKGKVIVNAIEAVLMEN 419 (2235)
T ss_pred hhcceeccchhhhhhhhHHHHHcCCCCCCccchHHHHHHHhccCCCccCCccc-cCccchHHhhccccccCccccccCCC
Confidence 56667777888888888889999999999889999999999999999999999 88899999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHH----HHHHHHHhcCCCCCCcccc
Q 000052 488 LPPPSPKAAATVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEA----AGLIAILIGGGSGDTNMLT 563 (2592)
Q Consensus 488 l~~~~~~~a~~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a----~~~l~~l~~~~~~~~~~~~ 563 (2592)
+++++++.++++++|++|||||++||.||++||++|+.+.+|+.+++|+.++++.++ +.+||.+|.||++. +
T Consensus 420 ~~~~~~~~~~~~~~~~~clrrl~~s~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 495 (2235)
T KOG1789|consen 420 YTKDDKEYKHKTEAQLQCLRRLFASKSGFQAFTEVNGVREKLGSLVVRVLSWKSESIDHSTVEALCALMYPMHDQ----Y 495 (2235)
T ss_pred CCCCChHHhhHHHHHHHHHHHHHhcchhhHHHhhchHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhcCccccc----h
Confidence 999999999999999999999999999999999999999999999999999877665 56777888888877 9
Q ss_pred CchhhhhhhhhccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHH
Q 000052 564 DSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF 643 (2592)
Q Consensus 564 d~~~e~~~~~~~nKs~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf 643 (2592)
|+|.|||++++|.||.+|..+++.-+++++++ ++|+||+|+|++||||++|.||||||.|++|+.+|++|+.+||+||
T Consensus 496 ~~r~e~~~~~~~~~s~~f~~~~~~~i~~~~~~--s~~~l~~~~~~~~~~~~vc~p~~ett~~~~f~~~l~~i~~~~r~~f 573 (2235)
T KOG1789|consen 496 ELRIEQLNKQSLMSSPKFVENLLDLIVLHVDR--STGWLVIASMLNFLTFSVCSPYSETTAGDTFDHILKLVSLRGRSFF 573 (2235)
T ss_pred hhHHHHHHHHHhhccHHHHHhchheEEEeecc--cccHHHHHHHHHHHHhcccCCCcccccccHHHHHHHHHHHhhhHHH
Confidence 99999988888888888888888888888777 6999999999999999999999999999999999999999999999
Q ss_pred HhhCCChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhh
Q 000052 644 ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLS 723 (2592)
Q Consensus 644 ~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~~AL~eGallrHL~~Alf~~~~~~r~lsr~LV~lW~~~~~~a~~LL~ 723 (2592)
+|||||+|+|+||+|+|||+|||||+..+++||++||+|||+|+||..||..+..++||||||||+||+++|++|.|||.
T Consensus 574 ~lf~~p~~si~~~~~~imr~i~ee~~i~~~sm~~~al~~ga~l~hl~~~~~l~~~~~~~~s~~li~lw~~~~q~a~dll~ 653 (2235)
T KOG1789|consen 574 RLFQCPSMTIVKGAGMVMRAIIEEADVETKSMQMLALSEGAFLTHLFMSLLLRVMTNKQLSGHLISLWIADNQQANDLLI 653 (2235)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccchHHHHHHHHHhhhhhhhhHHhhhHHHHHhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhHhhhcccCCCCCCccchhcccchhHHHHHHHHHhhcCCCCCCcccccccCCcccccccCCcccccccccCCCCC
Q 000052 724 RVLPPGLVAYLHTRSDGVLSEDANLEGSLTSRRQRRLLQQRKGRPGRGIASQEHSVPYVNNVEANDPTRQKTSAFRGPGS 803 (2592)
Q Consensus 724 RilP~GLl~yL~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 803 (2592)
|++||||++|++|++++++.|.+. +.. +.| ++.++.++.+.+ +| +.
T Consensus 654 r~lp~gl~~y~~s~~~~~v~~~d~-~~~---~~n--------~daa~~~s~~~~-~~---------------------~~ 699 (2235)
T KOG1789|consen 654 RCLPRGLLNYMESDEKVPVNEKDL-LIV---RNN--------FDAASNETKQNA-MK---------------------EK 699 (2235)
T ss_pred HhCCHHHHHhhhcCCCCCcCchhh-ccc---ccC--------chhhhhhhhhcc-ch---------------------hh
Confidence 999999999999998888877654 221 222 222122211110 00 00
Q ss_pred CcccCCCCCCCCcccCCCccccccCccccCCCCCCCCCCCCcccccccCCCccCccccCCCCcCcCCCccccccCCCCCC
Q 000052 804 HQTSNLDPSSGQASAFQSPAARSGENLVSDIPYMGFSQNDHPAVVATADSPLRGVHESLDPKATSSVDSDANAVGFQNTD 883 (2592)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (2592)
. +++.+.+ .+++|.+. ++|+. ++..
T Consensus 700 f--------------------------------------~~~~~sa---------~~g~~~~i---~~~~~-----~~~~ 724 (2235)
T KOG1789|consen 700 F--------------------------------------DQLRVTA---------EAGLERFV---QHWDL-----EQKL 724 (2235)
T ss_pred h--------------------------------------cCccccc---------cccHHHHH---HHhhh-----hhhc
Confidence 0 0000000 11222222 23333 4455
Q ss_pred CCCCcceeecccccCCCcccCChHHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhchHHhhhcccCCCCCCccccc
Q 000052 884 IPAPAQVVVESTPVGSGRLLLNWPEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETM 963 (2592)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~nW~~f~~~~~~Dh~~pdlIWN~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~ 963 (2592)
.+.|.|++++++.+++++...||+.||.+| ++|||||++||+|||+|+.+|.+.++.+||++.+|
T Consensus 725 ~~~p~~vi~e~~~~~~~~~~l~~r~~~~~~-----~adliwne~tr~e~~~a~~~e~~~l~~eke~~~~~---------- 789 (2235)
T KOG1789|consen 725 NFLPKRVIDEKQQQRQQPVVLRKRRNRVRP-----NADLIWNEKTREEFRHAMDTETRALISEKEQAPTG---------- 789 (2235)
T ss_pred ccccHHHhhHHhhhccCCeeeehhhhhcCc-----CcccccchhhHHHHHHHHHHHHHHhhhhhhhCCCC----------
Confidence 688999999999999999999999999999 89999999999999999999999999999987552
Q ss_pred cCCCCCCccccccCcceeeccCcccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhcccccccccCCCC
Q 000052 964 TGQDSVPQISWNYPEFSVSYPSLSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIGLTVDGAIP 1043 (2592)
Q Consensus 964 ~~~~~~~~i~WN~~eF~V~Y~sL~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~~~~~~~~~ 1043 (2592)
..|+|||.||+|+|+||.+|+|||+||||+||++.+. -++||+||++||+.|||||+|+.|.
T Consensus 790 ------~pi~wn~sef~i~y~sl~~ei~ig~yylrlll~~~~~---~~~p~~~p~~ff~~~yhrf~~~~~~--------- 851 (2235)
T KOG1789|consen 790 ------LPIAWNHTEFQIRYPSLLEEIKIGDYYLRLLLIEADE---NATPIHNPLEFFNNVYHRFLLSTKV--------- 851 (2235)
T ss_pred ------CccccccceeeeechhhHhhhhHhHHHHHHHHHhccC---CCCcccCHHHHHHHHHHHHhccccc---------
Confidence 3599999999999999999999999999999999987 4899999999999999999998864
Q ss_pred CcCCCCCccccCCCccCCCCCCCchhHHHHHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 000052 1044 DELGASDDWCDMGRLDGFGGGGGSSVRELCARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKVLMKV 1123 (2592)
Q Consensus 1044 ~~l~~s~d~~~~~~~~~~~g~~~~~~r~LcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~t~d~~~R~~Lll~~~~L~~~ 1123 (2592)
+|||||++||+|+|+||+.+||||.|++|++.|+++|.||.+||||++++.+|.++
T Consensus 852 ------------------------~~~~lc~ramai~y~~h~~tig~f~~s~~~~~~~~~~~~~~~r~~l~lll~~l~~~ 907 (2235)
T KOG1789|consen 852 ------------------------DMKCLCLRAMAITYSRHHMTIGAFQDSKYFVEMLQKCINPLERDHLVLLLSKLALN 907 (2235)
T ss_pred ------------------------cHHHHHHHHHHHHHHHhcccccccCccHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 29999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCcceeeeecCCCcccccccHHHHHHHhhcCCcCc
Q 000052 1124 LANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDW 1203 (2592)
Q Consensus 1124 ~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~ 1203 (2592)
+.||++||-.||+.++|||++++|+|++|+.||+|+|+|+|+++|+++|||||.+++|+++||++++.|+.+|.++.|++
T Consensus 908 ~~nv~~~ii~~~~~l~vdl~~~~h~~~~r~~i~~qsn~i~asa~~~~~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~ 987 (2235)
T KOG1789|consen 908 KDNVRELIISNILPLLVDLCVLAHLHVQRAKVQNQTNVIEASAEQMAEEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFE 987 (2235)
T ss_pred hccchhheeecchHHHHHHHHHHHHhhhccCCccchhHHHhhhhhcCchhheeecCCccccCchhHHHHHHHhcccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecccCcchhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHHhhcccCCCCCCCccccCcchhhhccCCCchHH
Q 000052 1204 TTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPH 1283 (2592)
Q Consensus 1204 ~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~Lph 1283 (2592)
+|.||+.||++|+++++||||||+++...|+|++++++.+||+||+.||++||++|++|+||+|+|+|||+||++.||||
T Consensus 988 ~s~~~a~gm~~w~~l~~i~~~rw~v~~~ipv~~~s~~~~~~l~~L~~Mc~~fpsrD~~~~IvrP~P~VKR~LS~~~CLPH 1067 (2235)
T KOG1789|consen 988 KSQIWAAGMDKWMSLAAVPQFRWTVCQQIPVMNFTDLSVLCLDTLLQMCEFFPSRDSHDCIVRPMPSVKRQLSEPVCLPH 1067 (2235)
T ss_pred HHHHHHhhhhHHHhhhhhhhhhhhhhhcccccCHHHHHHHHHHHHHHHHhhCCCcccCCCeeccChHHHHHhcCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhhcCCCChhhHHHHhhhhhhhhcccCCccccccCCch
Q 000052 1284 IAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAFHGGEEAAVSSSLP 1363 (2592)
Q Consensus 1284 lvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L~y~gsn~l~ia~lL~~~H~~Qa~~~~~~~~~ss~~~ 1363 (2592)
|+|+||||+|.|||+++.||+.+|+|||. |+|||++|||||+|||+|||++|||+||++||++|||++++ +++.+
T Consensus 1068 I~QlLLt~eP~iVE~vA~LLy~vmqdNp~-lpRLYlsGvFyFilmY~GSNvlpiArfl~yTH~kQAF~st~----~~~~~ 1142 (2235)
T KOG1789|consen 1068 IVQLLLTYEPQIVERVALLLYLVMQDNPF-LPRLYLSGVFYFILMYNGSNVLPIARFLHYTHMKQAFRSTL----PQFEG 1142 (2235)
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHhcCch-hHHHHhhchhheeeeeCCCchhhHHHHHHHHHHHHHHHhcc----ccccc
Confidence 99999999999999999999999999995 99999999999999999999999999999999999999765 56789
Q ss_pred hhhhhhhcCCCcHHHHHHHHhcCHHHHHHHhhcCCCCcccccchhhhhHHHHHHHHHhhcCccccccccccccccccCCC
Q 000052 1364 LAKRSVLGGLLPESLLYVLERSGPAAFSAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMP 1443 (2592)
Q Consensus 1364 ~~~rSvL~~lLPe~lv~~L~~~gpe~fa~~~~~~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~~ 1443 (2592)
+.+|||||.+|||+|+||||+||||+|+++|+|||||||+|||++||+ +|||+|++||+||++||++|+|+||+|||||
T Consensus 1143 ~~qRSvLG~lLPEa~~~yLE~ygPekFae~flgefDTPEiIW~~~MRr-~lIe~ia~HLaDf~~rL~sn~raLYqYcPiP 1221 (2235)
T KOG1789|consen 1143 QRQRSVLGTLLPEAATFYLEQYGPEKFAEVFLGEFDTPEIIWNTAMRR-HLIERIAVHLADFSHRLTSNVRALYQYCPIP 1221 (2235)
T ss_pred HHHHHHHhhhcHHHHHHHHHhhChHHHHHHHhccCCChHHHHHHHHHH-HHHHHHHHHHhccCHhHHHhHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCchhhhhhhhhhhhHHHHHhhhcCCCCCChhhhHHHHHHHHHHHHHHhccCCCCCChHHHHHHhcccCCCCCCCCccc
Q 000052 1444 PVTYPELKDEMWCHRYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHK 1523 (2592)
Q Consensus 1444 ~i~YpeL~~Elfc~~yYLr~l~d~~rfP~wpI~dpv~fL~sll~~wr~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~ 1523 (2592)
+|.||||++|||||+|||||+||++|||||||+||+.||++++++|++|++|+|+.||+++||+||+++.+.++
T Consensus 1222 ~i~YPeL~~ElfCh~YYLr~LCD~~rFPdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~------ 1295 (2235)
T KOG1789|consen 1222 LIDYPELAQELFCHVYYLRHLCDKQRFPDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEE------ 1295 (2235)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccccCCCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred CcccccccccccccCCCCH-HHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhc-cccCCCCCChhhHhhhhhccc
Q 000052 1524 SYSSEEMSNISKKIENIDE-EKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA-TMQGLQGPQPWRLLLLLKGQC 1601 (2592)
Q Consensus 1524 ~~~~~~~~~~s~~~~~~~e-~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd-~~~~~~gp~~~~~~liLr~q~ 1601 (2592)
.|+ ++|||+|+|||+||||||||+|||+|.++|+|||.|+. .....+||+||++.++|++|+
T Consensus 1296 ----------------hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQs 1359 (2235)
T KOG1789|consen 1296 ----------------HDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQS 1359 (2235)
T ss_pred ----------------cccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHH
Confidence 233 89999999999999999999999999999999999995 556789999999999999999
Q ss_pred ccccccCCcCCCCccCccccccccccccCCCCCCcccCchhHHHHHHHHHhhhhccCCCchhhHHHhcCHHHHHHHHHHh
Q 000052 1602 ILYRRYGDVLEPFKYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRC 1681 (2592)
Q Consensus 1602 ~lydr~g~~l~py~y~Gy~~Ll~~i~~e~~d~~ffs~~~~~ll~~A~EL~~~Tv~~S~lN~eEL~re~Gi~~L~~~lsrC 1681 (2592)
++|+||++++.||||+||+||+++|++|++|+.|||+.++|++.+|.||+.+||.||++|||||+||||+++|.++|+||
T Consensus 1360 ILy~Ry~~~L~PyKYAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRC 1439 (2235)
T KOG1789|consen 1360 ILYSRYSQELSPYKYAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRC 1439 (2235)
T ss_pred HHHHHhhhhcCccccCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHHhCCHHHHHH
Q 000052 1682 MCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDA 1761 (2592)
Q Consensus 1682 ~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~ 1761 (2592)
|+|++++|+|++|+++||+|+||||+|++||++||+++.|+|+|++|||||+++...|+++.+|+|||+.|+++.+||.+
T Consensus 1440 v~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~ 1519 (2235)
T KOG1789|consen 1440 VPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQ 1519 (2235)
T ss_pred heeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhCcCCCCCCCCccHHHHHHHHHhccH
Q 000052 1762 LLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSGLCSNGISIPYNEAAASALRALLTP 1841 (2592)
Q Consensus 1762 i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~Al~aL~rL~g~~~d~~~~P~n~~v~~~L~klLtP 1841 (2592)
++++|+|||||++||+||||+||+++++++ .+|+|+++|.||+.|+.||+||+|++.|+..+|.|+.++..|..+|||
T Consensus 1520 LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se--~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTP 1597 (2235)
T KOG1789|consen 1520 LFQAGVLWYLLPHLFHYDYTLEESGVQHSE--DSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTP 1597 (2235)
T ss_pred HHHhhhHHHHHHHHhcccccccccCccccc--cchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccH
Confidence 999999999999999999999999999987 357999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHhhccCcCcccccchhHHHHHHHHHHHHHhccCCCCCcccCCccccccccccCCcEEeeEEEEe
Q 000052 1842 KLASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRV 1921 (2592)
Q Consensus 1842 ~l~~~L~d~~p~~~L~~LnSn~EnPeLIWnn~tRaEL~e~L~~q~~~~~~~~~w~l~~~~~F~Ys~l~~ELvVGGVYLRl 1921 (2592)
++++.|++...+++|++||||.||||+||||+||+||++|++.||..+.++|.+|...+.+|.|+.|++||+||+||||+
T Consensus 1598 yiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1598 YIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCCCCCCccccCCCCcccCcccccc
Q 000052 1922 YNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERK 2001 (2592)
Q Consensus 1922 yneqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 2001 (2592)
||+||+|.|..||.|+.+|+|||.++.++..+...+. ..++.+-|++.. +++..+
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~---------------------~~s~d~ie~~~~-V~sE~H--- 1732 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPK---------------------AISDDLIEIDWG-VGSEAH--- 1732 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCcc---------------------ccccchhhhhcc-cchhhh---
Confidence 9999999999999999999999999998876422110 001111112111 111000
Q ss_pred ccccccccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhcccccccccccccccc--CCCCCCChhhHHHHHHH
Q 000052 2002 VNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSV--PFAPDSNIPQLCLNVLS 2079 (2592)
Q Consensus 2002 l~~~s~~~s~~~~~~~ed~e~l~~l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~--~~~~~~~vq~~aL~VL~ 2079 (2592)
|. ..+ .-.+++|+|+||+||++.||+++..+.+...+.++|.|+.. ..+..+.||++||+|+.
T Consensus 1733 ----------gD----~lP-s~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~ 1797 (2235)
T KOG1789|consen 1733 ----------GD----SLP-TETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL 1797 (2235)
T ss_pred ----------cC----CCC-hHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH
Confidence 11 011 11378999999999999999999999999999999999843 23456789999999999
Q ss_pred HHcCChhHHHHHHhhchhHHHHHHHHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHH
Q 000052 2080 LLTTCASCLEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA 2159 (2592)
Q Consensus 2080 ~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~ 2159 (2592)
.+|+|++||++|+.+. ++..|+.+||+.|++++.+|++||+|.|+++++|+|++|||++|++++||++ ..+|+|++
T Consensus 1798 ~~Tan~~Cv~~~a~~~-vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~---~~~QqRAq 1873 (2235)
T KOG1789|consen 1798 LATANKECVTDLATCN-VLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT---NSDQQRAQ 1873 (2235)
T ss_pred HHhcccHHHHHHHhhh-HHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc---CcHHHHHH
Confidence 9999999999999866 8999999999999999999999999999999999999999999999999986 48999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Q 000052 2160 AASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQ 2239 (2592)
Q Consensus 2160 aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q 2239 (2592)
+|++|+||.+||+|||||+|+|.||||.+|+|+|||+| ||+||+||+||||||||||+.||++++.+|.+|+.++|++|
T Consensus 1874 aAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~Q 1952 (2235)
T KOG1789|consen 1874 AAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQ 1952 (2235)
T ss_pred HHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHH
Q 000052 2240 MKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSA 2319 (2592)
Q Consensus 2240 ~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~ 2319 (2592)
++||.+.|++||++.+++|+.+|+.|||||+|.|+++|+|+|||||+||++|||++++++++++++++ .++++|.
T Consensus 1953 Qk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh-----~l~lLt~ 2027 (2235)
T KOG1789|consen 1953 QKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQH-----ELDLLTK 2027 (2235)
T ss_pred ccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccc-----hhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988755 5689999
Q ss_pred HHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHH
Q 000052 2320 ALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLH 2399 (2592)
Q Consensus 2320 A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh 2399 (2592)
|+|+||++||+|+||+|+|||+||++.+|+++|. .+++|||||||
T Consensus 2028 A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~-----------------------------------s~P~SaiRVlH 2072 (2235)
T KOG1789|consen 2028 AFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNT-----------------------------------SAPRSAIRVLH 2072 (2235)
T ss_pred HHHHHHHhCcchhhhCCCccchHHHHHHHHhcCC-----------------------------------cCcHHHHHHHH
Confidence 9999999999999999999999999999999763 14589999999
Q ss_pred HhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCchHHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCC
Q 000052 2400 QLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGG 2479 (2592)
Q Consensus 2400 ~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~ 2479 (2592)
+||.|++||+|||+++|+.| +|++|||+.+| +++|||+|||+|+ |++++||+|+|++|||||||+||||+ +
T Consensus 2073 ~Lsen~~C~~AMA~l~~i~~-~m~~mkK~~~~---~GLA~EalkR~~~---r~~~eLVAQ~LK~gLvpyLL~LLd~~--t 2143 (2235)
T KOG1789|consen 2073 ELSENQFCCDAMAQLPCIDG-IMKSMKKQPSL---MGLAAEALKRLMK---RNTGELVAQMLKCGLVPYLLQLLDSS--T 2143 (2235)
T ss_pred HHhhccHHHHHHhccccchh-hHHHHHhcchH---HHHHHHHHHHHHH---HhHHHHHHHHhccCcHHHHHHHhccc--c
Confidence 99999999999999999766 56666555443 3599999999999 78999999999999999999999997 2
Q ss_pred CCCCcccccccccchhhhHHHHHHHHHHHHhcCCChHHHHHHHhcCchhhhhccCCCceeccCCCc----ccccccceee
Q 000052 2480 RNGLSSQMKWNESEASIGRVLAIEVLHAFAAEGAHCSKVRDILSASDVWSAYKDQKHDLFLPSNAQ----SAAAGVAGLI 2555 (2592)
Q Consensus 2480 ~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~~~~G~~V~~iL~~s~vW~~YkdQ~HDLFi~~~~~----~~~~~~aGyl 2555 (2592)
.+|+ |+ .+.+||+||++||+|.++..+|+||++||++|+||++|||||||||||++.+ ++++||||||
T Consensus 2144 L~~~---~~-----~aas~A~Iv~aLk~~~~~l~vg~kV~EILd~S~VWSAfKDQKHDLFlpe~~t~~~t~gp~GVAGyl 2215 (2235)
T KOG1789|consen 2144 LNGV---SN-----GAAARAEIVDALKSAILDLKVGQKVAEILDKSPVWSAFKDQKHDLFLPEARTQAITGGPTGVAGYL 2215 (2235)
T ss_pred cccc---Cc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcccccccccchhccccCCcchhhhhh
Confidence 3443 43 3457889999999999999999999999999999999999999999999854 5567999999
Q ss_pred cccccccceeecCCCCCCC
Q 000052 2556 ESSSSRLPYALTAPPQSSH 2574 (2592)
Q Consensus 2556 t~~~~~~~~~lta~~~~~~ 2574 (2592)
|+|++..+|.+++||++.+
T Consensus 2216 t~g~~~~~~msn~PPP~~H 2234 (2235)
T KOG1789|consen 2216 TEGMFNPPPMSNQPPPMHH 2234 (2235)
T ss_pred hccCCCCcccccCCcCCCC
Confidence 9999999999999987654
No 2
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-102 Score=958.69 Aligned_cols=922 Identities=20% Similarity=0.271 Sum_probs=734.7
Q ss_pred HHHHHHHhcccCCCccccCHHHHHHHHHHHHHHHhhchHHhhhcccCCCCCCccccccCCCCCCccccccCcc-eeeccC
Q 000052 907 PEFWRAFSLDHNRADLVWNERTRQELREALQAEVHKLDVEKERTEDIVPGGATLETMTGQDSVPQISWNYPEF-SVSYPS 985 (2592)
Q Consensus 907 ~~f~~~~~~Dh~~pdlIWN~~tR~ELr~aL~~Ei~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~WN~~eF-~V~Y~s 985 (2592)
+.|...|.+|+++|++|||++||+.|++.+.+|+.+|.+.... +++..|+|.++ .|+||.
T Consensus 1167 ekFae~flgefDTPEiIW~~~MRr~lIe~ia~HLaDf~~rL~s-------------------n~raLYqYcPiP~i~YPe 1227 (2235)
T KOG1789|consen 1167 EKFAEVFLGEFDTPEIIWNTAMRRHLIERIAVHLADFSHRLTS-------------------NVRALYQYCPIPLIDYPE 1227 (2235)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHhccCHhHHH-------------------hHHHHHHcCCCCCCCcHH
Confidence 4688889999999999999999999999999999999996551 47899999999 899999
Q ss_pred cccceeeccchhhhhhccCCCCCCCCCCCCCHHHHHHHHHHHHHhccccc---ccccC--CC---------CCcC-----
Q 000052 986 LSKEVCVGQYYLRLLLESGSSGRAQDFPLRDPVAFFRALYHRFLCDADIG---LTVDG--AI---------PDEL----- 1046 (2592)
Q Consensus 986 L~~Ev~vg~yYLRlLle~~~~~~~~~~~I~~p~~Ff~~ly~rfL~~~~~~---~~~~~--~~---------~~~l----- 1046 (2592)
|.+|++|+.||||+|||+.++ |+|||+||++|+++++..|..|.++| |+++. ++ -|++
T Consensus 1228 L~~ElfCh~YYLr~LCD~~rF---PdWPI~dpV~fL~~~L~~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~Kirr 1304 (2235)
T KOG1789|consen 1228 LAQELFCHVYYLRHLCDKQRF---PDWPIRDPVPFLRCCLATWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRR 1304 (2235)
T ss_pred HHHHHHHHHHHHHHHhccccC---CCCcccCchHHHHHHHHHHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHH
Confidence 999999999999999999999 99999999999999999999999987 44421 11 1221
Q ss_pred -------CCCCccccCCC------c--------cCCCCCCCch-hH-HHHHHHHHHHHHhhhcccCCCCChhHHHHHHhh
Q 000052 1047 -------GASDDWCDMGR------L--------DGFGGGGGSS-VR-ELCARAMAIVYEQHYTTIGPFEGTAHITVLLDR 1103 (2592)
Q Consensus 1047 -------~~s~d~~~~~~------~--------~~~~g~~~~~-~r-~LcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~ 1103 (2592)
-++||.+..|+ . +..+|.+|++ +| .|||||+||+|.||.+++.||||+||.+.+=..
T Consensus 1305 qY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta~~~~GPdP~riiL~LKaQsILy~Ry~~~L~PyKYAGYPMLi~ti 1384 (2235)
T KOG1789|consen 1305 QYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETANNSGGPDPHRIVLCLKAQSILYSRYSQELSPYKYAGYPMLIKTI 1384 (2235)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCCCChhHhhHHHHhHHHHHHHhhhhcCccccCcchhhhhhh
Confidence 14556566555 1 2336777775 55 999999999999999999999999998855444
Q ss_pred cCCH-------HHHHHHHHHHHHH-----HhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCc
Q 000052 1104 TDDR-------ALRHRLLLLLKVL-----MKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPF 1171 (2592)
Q Consensus 1104 t~d~-------~~R~~Lll~~~~L-----~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~ 1171 (2592)
|.|. -.|..|+-....| ..+.+|++++.+.||+++|++++.+|...+++++.|....++.++..|.
T Consensus 1385 T~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~-- 1462 (2235)
T KOG1789|consen 1385 TLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCD-- 1462 (2235)
T ss_pred hhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHH--
Confidence 5443 2344555555544 5889999999999999999999999999999998888777776665551
Q ss_pred ceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHH
Q 000052 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNM 1251 (2592)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~ 1251 (2592)
| ..-+.++.+-|.-+ .|+...|-|+++.
T Consensus 1463 -----------------------------------c-------~SVaaQFE~cR~~~---------~EmPSiI~Dl~r~- 1490 (2235)
T KOG1789|consen 1463 -----------------------------------C-------FSVAAQFEACRQRL---------MEMPSIIGDLTRL- 1490 (2235)
T ss_pred -----------------------------------H-------HHHHHHHHHHHHHH---------hhhhHHHHHHHHH-
Confidence 0 11122222222222 3444556666554
Q ss_pred hhcccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhh---
Q 000052 1252 VSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA--- 1328 (2592)
Q Consensus 1252 ~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L~--- 1328 (2592)
.+ |..-|.++..+++-+..+.. .+..+..|+..|+.||+|.
T Consensus 1491 l~-----------------------------------f~~vPr~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf 1534 (2235)
T KOG1789|consen 1491 LQ-----------------------------------FSNLPRLSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLF 1534 (2235)
T ss_pred HH-----------------------------------hccccHHHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHh
Confidence 22 55678888999999998877 6777999999999999996
Q ss_pred ---cC--CCChhhH----HHHhhhhhhhhc---------ccCCccccccCCchhhhhhhhcCCCcHHHHHHHHhcCHHHH
Q 000052 1329 ---YP--GSNLYSI----AQLFSVTHVHQA---------FHGGEEAAVSSSLPLAKRSVLGGLLPESLLYVLERSGPAAF 1390 (2592)
Q Consensus 1329 ---y~--gsn~l~i----a~lL~~~H~~Qa---------~~~~~~~~~ss~~~~~~rSvL~~lLPe~lv~~L~~~gpe~f 1390 (2592)
|+ .||+... .+-++..|.+|+ |..+|+. ++++.+.|.+|+.||+|.+...|........
T Consensus 1535 ~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~---TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~i 1611 (2235)
T KOG1789|consen 1535 HYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEEN---TPDNDTVQASLRALLTPYIARCLKLETNDMV 1611 (2235)
T ss_pred cccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccccc---CCCChhHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 44 2332211 234445555554 3345533 6889999999999999999999999999999
Q ss_pred HHHhhcCCCCcccccchhhhhHHHHHHHHHhhcCccccccccccccccccCCCCCCchhhhhhhhhhhhHHHHHhhhcCC
Q 000052 1391 SAAMVSDSDTPEIIWTHKMRAENLIRQVLQHLGDFPQKLSQHCHSLYEYAPMPPVTYPELKDEMWCHRYYLRNLCDEIQF 1470 (2592)
Q Consensus 1391 a~~~~~~~dtPevIWn~~MR~~~Li~~i~~hl~df~~rL~~~~~alY~~~p~~~i~YpeL~~Elfc~~yYLr~l~d~~rf 1470 (2592)
++.+++|.+|||+|||+.+|. +|++++.. +|-.+.+..-|+-.-...|.|..+++|||+|..|+|.++|+
T Consensus 1612 Lk~LNsN~E~Py~IWNn~TRa-ELLeFve~------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeq--- 1681 (2235)
T KOG1789|consen 1612 LKTLNSNMENPYMIWNNGTRA-ELLEFVER------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQ--- 1681 (2235)
T ss_pred HHHhhcCCCCceeeecCccHH-HHHHHHHH------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCC---
Confidence 999999999999999999999 99999999 88888888888888889999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhccCCCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHH
Q 000052 1471 PNWPIVEHVEFLQSLLVMWREELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYR 1550 (2592)
Q Consensus 1471 P~wpI~dpv~fL~sll~~wr~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYR 1550 (2592)
|++.|.+|..|..++++......+ ..+|-..+ ++.+.+.|.-++
T Consensus 1682 Ptf~l~ePk~Fa~~LlDyI~S~~~------------~l~~~~~~-----------------------~~~s~d~ie~~~- 1725 (2235)
T KOG1789|consen 1682 PTFALHEPKKFAIDLLDYIKSHSA------------ELTGAPKP-----------------------KAISDDLIEIDW- 1725 (2235)
T ss_pred CchhhcCcHHHHHHHHHHHHHhHH------------HhcCCCCc-----------------------cccccchhhhhc-
Confidence 999999999999999999876322 12221111 111111121111
Q ss_pred HHHHHHCCCCCCchHHHHHHHHHHHHHhhccccCCCCCChhhHhhhhhcccccccccCCcCCCCccCccccccccccccC
Q 000052 1551 KLAMKYHPDKNPEGREKFLAVQKAYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLEPFKYAGYPMLLNAVTVDE 1630 (2592)
Q Consensus 1551 kLa~kyHPDknp~~~ekF~~I~~AYevLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~l~py~y~Gy~~Ll~~i~~e~ 1630 (2592)
+.+-.-|-|+.|... .++.+.+.|.+ .++.++
T Consensus 1726 ~V~sE~HgD~lPs~~----~v~m~LtAL~N--------------------------------------------li~~nP 1757 (2235)
T KOG1789|consen 1726 GVGSEAHGDSLPTET----KVLMTLTALAN--------------------------------------------LVSANP 1757 (2235)
T ss_pred ccchhhhcCCCChHH----HHHHHHHHHHH--------------------------------------------HHhhCc
Confidence 123356888888533 45555555554 222334
Q ss_pred CCCCCcccCchhHHHHHHHHHhhhhccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhc
Q 000052 1631 DDNNFLSSDRAPLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLS 1710 (2592)
Q Consensus 1631 ~d~~ffs~~~~~ll~~A~EL~~~Tv~~S~lN~eEL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a 1710 (2592)
|-.+.|+++. +|.... .||.+
T Consensus 1758 dlasvfgSe~---------------------------------------~lig~F------------------~l~~~-- 1778 (2235)
T KOG1789|consen 1758 DLASVFGSEI---------------------------------------LLIGNF------------------PLLIT-- 1778 (2235)
T ss_pred chhhhccchh---------------------------------------hhhccc------------------HHHHH--
Confidence 4456776532 332211 01111
Q ss_pred cChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHHHHHHHhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCcccc
Q 000052 1711 QFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNES 1790 (2592)
Q Consensus 1711 ~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~ 1790 (2592)
.+.-+..|+++..||++|+.++++.+|++.|+.+|+|-.||.+|.+-. +.-+..++++
T Consensus 1779 ---------------------~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-S~R~~vL~vL 1836 (2235)
T KOG1789|consen 1779 ---------------------YLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-SMRARVLDVL 1836 (2235)
T ss_pred ---------------------HHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-HHHHHHHHHH
Confidence 122255678888889999988999999999999998888888886522 2334677888
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHh-----------------hCcCCCCCCCCccHHHHHHHHHhccHHHHHHhhcCChH
Q 000052 1791 HGVGASVQIAKNMHAVRAAQALSRL-----------------SGLCSNGISIPYNEAAASALRALLTPKLASLLKDQIPK 1853 (2592)
Q Consensus 1791 ~~~~~~~qivkn~lAk~Al~aL~rL-----------------~g~~~d~~~~P~n~~v~~~L~klLtP~l~~~L~d~~p~ 1853 (2592)
++++++.|+.|++++++++.++..+ +|+..|++.||+ |+++|-||||..|++.|+|+ |+
T Consensus 1837 YAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr---V~ITL~kFLP~~f~d~~RD~-PE 1912 (2235)
T KOG1789|consen 1837 YALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR---VTITLIKFLPEIFADSLRDS-PE 1912 (2235)
T ss_pred HHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc---eeeehHHhchHHHHHHHhcC-HH
Confidence 8888888999888888888887743 478899999997 59999999999999999997 89
Q ss_pred HHHHHhhccCcCcccccchhHHHHHHHHHHHH------HhccCCCCCcccCCccccccccccCCcEEeeEEEEeeccCCC
Q 000052 1854 NLLSKLNTNLESPEIIWNSSTRAELLKFVDQQ------RASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPD 1927 (2592)
Q Consensus 1854 ~~L~~LnSn~EnPeLIWnn~tRaEL~e~L~~q------~~~~~~~~~w~l~~~~~F~Ys~l~~ELvVGGVYLRlyneqP~ 1927 (2592)
+++++|+++|||||||||+.||+.++..+.++ +|+++|+.+|++|+.+.. +++..||+.|||||+|.|+.+|+
T Consensus 1913 AaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~Fi~~P~ 1991 (2235)
T KOG1789|consen 1913 AAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREFVVGPG 1991 (2235)
T ss_pred HHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHHhhCCC
Confidence 99999999999999999999999999888775 367899999999998766 78999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCCCCCCccccCCCCcccCcccccccccccc
Q 000052 1928 FEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESL 2007 (2592)
Q Consensus 1928 ~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~s~ 2007 (2592)
|+||+||+|+.+|||.+.+++++.++.
T Consensus 1992 f~LR~Pk~FL~~LLek~lelm~~~~pe----------------------------------------------------- 2018 (2235)
T KOG1789|consen 1992 FNLRHPKLFLTELLEKVLELMSRPTPE----------------------------------------------------- 2018 (2235)
T ss_pred CcccCHHHHHHHHHHHHHHHhcCCCcc-----------------------------------------------------
Confidence 999999999999999999998764421
Q ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhH
Q 000052 2008 AVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASC 2087 (2592)
Q Consensus 2008 ~~s~~~~~~~ed~e~l~~l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~C 2087 (2592)
.+. +.+...|+++|++.+|+|+||++++|+++|+...+..+ ++.++++|++|||.|+.|+.|
T Consensus 2019 ------------qh~---l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~---n~s~P~SaiRVlH~Lsen~~C 2080 (2235)
T KOG1789|consen 2019 ------------QHE---LDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ---NTSAPRSAIRVLHELSENQFC 2080 (2235)
T ss_pred ------------cch---hHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc---CCcCcHHHHHHHHHHhhccHH
Confidence 012 23346789999999999999999999999999999886 367899999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHhhCcchHHHHHHHHHHhh--cchHHHHHHHHcCChhhhHHhhcCCC---CCCcHHHHHHHHH
Q 000052 2088 LEAMVADGSSLLLLLQMLHYAPACREGVLHVLYALA--STPELAWAAAKHGGVVYILELLLPSQ---QETPLQQRAAAAS 2162 (2592)
Q Consensus 2088 VeaIA~~~~vl~~Ll~lL~~~p~~~~~vL~~L~aL~--S~~~LVkqal~~GgvlYLL~lL~~~~---e~~~~~~R~~aA~ 2162 (2592)
+++||+.+ ++..++..|...++..++++++|.+++ ..+++|+|++++|.|.|||.+|+++. -....+.|+++++
T Consensus 2081 ~~AMA~l~-~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~ 2159 (2235)
T KOG1789|consen 2081 CDAMAQLP-CIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVD 2159 (2235)
T ss_pred HHHHhccc-cchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHH
Confidence 99999977 556689999999999999999998888 47799999999999999999998863 1347889999999
Q ss_pred HHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCch
Q 000052 2163 LLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPG 2198 (2592)
Q Consensus 2163 lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~ 2198 (2592)
+|+.|..+..+|.||++||+| ...++|.+|+.-
T Consensus 2160 aLk~~~~~l~vg~kV~EILd~---S~VWSAfKDQKH 2192 (2235)
T KOG1789|consen 2160 ALKSAILDLKVGQKVAEILDK---SPVWSAFKDQKH 2192 (2235)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hhHHHHhhhccc
Confidence 999999999999999999999 899999999864
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.2e-14 Score=175.78 Aligned_cols=69 Identities=41% Similarity=0.699 Sum_probs=61.9
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC---chHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP---EGREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp---~~~ekF~~I~~AYevL 1578 (2592)
..+.|+||||+ ++||++||||||||||+|||||+|| ++.|+|++|++|||+|
T Consensus 3 ~~dyYeiLGV~-------------------------k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVL 57 (371)
T COG0484 3 KRDYYEILGVS-------------------------KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVL 57 (371)
T ss_pred ccchhhhcCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45689999999 5899999999999999999999999 3899999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCcCC
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE 1612 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~l~ 1612 (2592)
+|++ ++..||+||+...
T Consensus 58 sD~e-----------------KRa~YD~fG~~~~ 74 (371)
T COG0484 58 SDPE-----------------KRAAYDQFGHAGF 74 (371)
T ss_pred CCHH-----------------HHHHhhccCcccc
Confidence 9975 6888999997643
No 4
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.2e-14 Score=175.08 Aligned_cols=111 Identities=27% Similarity=0.418 Sum_probs=90.9
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevL 1578 (2592)
.-.|++|||. ++++..+||++|||||++|||||||. +.++|+.|+.||+||
T Consensus 8 ~c~YE~L~v~-------------------------~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVL 62 (508)
T KOG0717|consen 8 RCYYEVLGVE-------------------------RDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVL 62 (508)
T ss_pred hHHHHHhccc-------------------------ccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 4689999998 57899999999999999999999995 788999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCcCC----CCccCccccccccccccCCCCCCcccCchhHHHHHHH
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE----PFKYAGYPMLLNAVTVDEDDNNFLSSDRAPLLVAASE 1649 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~l~----py~y~Gy~~Ll~~i~~e~~d~~ffs~~~~~ll~~A~E 1649 (2592)
|||++|.||+. |.+.||+.+...|.---.++. +.+|.|| +++.+|||.+|+..|...|.+
T Consensus 63 Sdp~eR~wyd~--hreqil~~~~s~~~~~~~dlf~ff~~~~y~gy---------~~~~~gfy~vy~dvf~~~~~~ 126 (508)
T KOG0717|consen 63 SDPQERAWYDS--HREQILRGKNSDTGVQIEDLFQFFTSSCYIGY---------ENTSAGFYRVYQDVFNALASD 126 (508)
T ss_pred cChHhhhhHHH--HHHHHhcCCCCccccchHHHHHHhhhhhhccc---------ccccchhHHHHHHHHHHHhhh
Confidence 99999999998 456777776443222223333 4479999 577899999999999877765
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-13 Score=160.49 Aligned_cols=70 Identities=37% Similarity=0.676 Sum_probs=62.2
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
+..+.|++|||+ +++++.+||+||||||+||||||||+ +.++|++|+.|||+
T Consensus 14 ~~rDfYelLgV~-------------------------k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEV 68 (336)
T KOG0713|consen 14 AGRDFYELLGVP-------------------------KNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEV 68 (336)
T ss_pred cCCCHHHHhCCC-------------------------CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999 58999999999999999999999986 89999999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCcCC
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVLE 1612 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~l~ 1612 (2592)
|+||. +|..||+||+..-
T Consensus 69 LsDpe-----------------kRk~YD~~GEegL 86 (336)
T KOG0713|consen 69 LSDPE-----------------KRKHYDTYGEEGL 86 (336)
T ss_pred hcCHH-----------------HHHHHHhhhHhhh
Confidence 99975 5677899986543
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.9e-12 Score=157.28 Aligned_cols=65 Identities=45% Similarity=0.789 Sum_probs=59.8
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcccc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATMQ 1583 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd~~~ 1583 (2592)
.-|+||||++ +|+++||||||||||+||||||||++.|+|++|++|||+|+||+
T Consensus 5 ~~y~il~v~~-------------------------~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~e- 58 (337)
T KOG0712|consen 5 KLYDILGVSP-------------------------DASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPE- 58 (337)
T ss_pred ccceeeccCC-------------------------CcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 4689999995 78999999999999999999999999999999999999999975
Q ss_pred CCCCCChhhHhhhhhcccccccccCCc
Q 000052 1584 GLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1584 ~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
++.+||+||++
T Consensus 59 ----------------kr~~yD~~g~~ 69 (337)
T KOG0712|consen 59 ----------------KREIYDQYGEE 69 (337)
T ss_pred ----------------HHHHHHhhhhh
Confidence 68889999965
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=2e-11 Score=153.49 Aligned_cols=68 Identities=26% Similarity=0.533 Sum_probs=60.0
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHh
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevL 1578 (2592)
+..+.|++|||++ ++++++|||||||||++||||+|++ +.++|++|++|||+|
T Consensus 2 ~~~dyY~~Lgv~~-------------------------~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevL 56 (372)
T PRK14296 2 KKKDYYEVLGVSK-------------------------TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVL 56 (372)
T ss_pred CCCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHh
Confidence 4468999999994 7899999999999999999999964 789999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ++..||+||+.
T Consensus 57 sD~~-----------------KR~~YD~~G~~ 71 (372)
T PRK14296 57 LDKD-----------------KRKQYDQFGHA 71 (372)
T ss_pred cCHH-----------------Hhhhhhhccch
Confidence 9965 67788888864
No 8
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=2.8e-11 Score=152.11 Aligned_cols=66 Identities=41% Similarity=0.702 Sum_probs=59.3
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLs 1579 (2592)
.+.|+||||++ ++|+++|||||||||++||||||++ +.++|++|++|||+|+
T Consensus 3 ~dyY~vLgv~~-------------------------~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLs 57 (369)
T PRK14288 3 LSYYEILEVEK-------------------------HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLS 57 (369)
T ss_pred CChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 47899999994 7899999999999999999999973 6789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (369)
T PRK14288 58 DEK-----------------KRALYDRYGKK 71 (369)
T ss_pred cHH-----------------HHHHHHHhccc
Confidence 964 67889999975
No 9
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=99.13 E-value=2.8e-11 Score=108.50 Aligned_cols=45 Identities=40% Similarity=0.809 Sum_probs=43.0
Q ss_pred eeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhc
Q 000052 1173 EWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKL 1218 (2592)
Q Consensus 1173 eWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l 1218 (2592)
||||.. ||++.||||.++|++++++|.|+++|+||++||++|+|+
T Consensus 1 ~Wy~~~-~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 1 EWYYAR-NGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CEEEeC-CCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence 699985 999999999999999999999999999999999999986
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.13 E-value=4.5e-11 Score=151.91 Aligned_cols=69 Identities=35% Similarity=0.649 Sum_probs=60.8
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevL 1578 (2592)
.+...+.|++|||++ +++.++|||||||||++||||||++ .++|++|++||++|
T Consensus 24 ~~~~~d~Y~vLGV~~-------------------------~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevL 77 (421)
T PTZ00037 24 EVDNEKLYEVLNLSK-------------------------DCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVL 77 (421)
T ss_pred cccchhHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHh
Confidence 455679999999994 7899999999999999999999985 69999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ++..||+||..
T Consensus 78 sD~~-----------------kR~~YD~~G~~ 92 (421)
T PTZ00037 78 SDPE-----------------KRKIYDEYGEE 92 (421)
T ss_pred ccHH-----------------HHHHHhhhcch
Confidence 9965 67788888864
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=7.8e-11 Score=148.32 Aligned_cols=69 Identities=41% Similarity=0.671 Sum_probs=60.4
Q ss_pred CChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHH
Q 000052 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYE 1576 (2592)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYe 1576 (2592)
|+..+.|++|||++ +++.++||||||+||++||||+|++ +.++|++|++|||
T Consensus 1 ~~~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~ 55 (372)
T PRK14286 1 MSERSYYDILGVSK-------------------------SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYE 55 (372)
T ss_pred CCCCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHH
Confidence 34568999999994 7899999999999999999999973 6789999999999
Q ss_pred HhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1577 vLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+|+. ++..||+||+.
T Consensus 56 vL~d~~-----------------kR~~YD~~G~~ 72 (372)
T PRK14286 56 ILRDPK-----------------KRQAYDQFGKA 72 (372)
T ss_pred HhccHH-----------------HHHHHHHhCch
Confidence 999964 57789998864
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.4e-10 Score=146.77 Aligned_cols=66 Identities=35% Similarity=0.503 Sum_probs=58.6
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
..+.|+||||++ ++++++|||||||||++||||||++ +.++|++|++||++|
T Consensus 8 ~~Dyy~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 62 (392)
T PRK14279 8 EKDFYKELGVSS-------------------------DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVL 62 (392)
T ss_pred ccCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHh
Confidence 468999999994 7899999999999999999999984 679999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
+|++ ++..||+||+
T Consensus 63 sD~~-----------------KR~~YD~~G~ 76 (392)
T PRK14279 63 SDPA-----------------KRKEYDETRR 76 (392)
T ss_pred cchh-----------------hhhHHHHhhh
Confidence 9975 5777888875
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=1.6e-10 Score=145.59 Aligned_cols=67 Identities=33% Similarity=0.624 Sum_probs=59.5
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
..+.|++|||++ +++.++||||||+||++||||+|++ +.++|++|++|||+|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~ 57 (371)
T PRK14287 3 KRDYYEVLGVDR-------------------------NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLS 57 (371)
T ss_pred CCCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhC
Confidence 457999999994 7899999999999999999999964 7789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (371)
T PRK14287 58 DPQ-----------------KKAHYDQFGHT 71 (371)
T ss_pred cHh-----------------HHHHHHhhCCc
Confidence 964 67789999864
No 14
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=2.2e-10 Score=144.65 Aligned_cols=67 Identities=39% Similarity=0.667 Sum_probs=59.7
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
..+.|+||||+ ++++.++||+|||+||++||||+|++ +.++|+.|++||++|+
T Consensus 3 ~~d~y~~Lgv~-------------------------~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~ 57 (380)
T PRK14276 3 NTEYYDRLGVS-------------------------KDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLS 57 (380)
T ss_pred CCCHHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhc
Confidence 46899999999 47899999999999999999999974 7899999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------kR~~YD~~G~~ 71 (380)
T PRK14276 58 DPQ-----------------KRAAYDQYGAA 71 (380)
T ss_pred CHh-----------------hhhhHhhcCCc
Confidence 964 67789998864
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.7e-10 Score=143.49 Aligned_cols=67 Identities=37% Similarity=0.743 Sum_probs=58.9
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYev 1577 (2592)
..+.|+||||+ ++++.++||+|||+||++||||+|++ +.++|++|++|||+
T Consensus 3 ~~d~y~~lgv~-------------------------~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 57 (369)
T PRK14282 3 KKDYYEILGVS-------------------------RNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEV 57 (369)
T ss_pred CCChHHhcCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHH
Confidence 45799999998 47899999999999999999999974 57899999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+|+. ++..||+||..
T Consensus 58 L~d~~-----------------kR~~YD~~g~~ 73 (369)
T PRK14282 58 LSDPQ-----------------KRAMYDRFGYV 73 (369)
T ss_pred hcChh-----------------hHHHHhhcCcc
Confidence 99964 57788888864
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.1e-10 Score=143.22 Aligned_cols=67 Identities=34% Similarity=0.643 Sum_probs=59.6
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
..+.|+||||++ +++.++||||||+||++||||+|++ +.++|++|++||++|+
T Consensus 3 ~~~~y~iLgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~ 57 (376)
T PRK14280 3 KRDYYEVLGVSK-------------------------SASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLS 57 (376)
T ss_pred CCChHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhc
Confidence 357999999994 7899999999999999999999964 7899999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------kr~~yD~~G~~ 71 (376)
T PRK14280 58 DDQ-----------------KRAQYDQFGHA 71 (376)
T ss_pred cHh-----------------HHHHHHhcCcc
Confidence 964 67889999864
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.99 E-value=3.4e-10 Score=138.41 Aligned_cols=67 Identities=33% Similarity=0.598 Sum_probs=59.5
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
..+.|+||||++ +++.++||||||+||++||||+|++ +.++|+.|++||++|+
T Consensus 3 ~~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (291)
T PRK14299 3 YKDYYAILGVPK-------------------------NASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLS 57 (291)
T ss_pred CCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhc
Confidence 468999999984 7899999999999999999999964 7899999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||..
T Consensus 58 d~~-----------------kr~~yD~~g~~ 71 (291)
T PRK14299 58 DPE-----------------KRRIYDTYGTT 71 (291)
T ss_pred CHH-----------------HHHHHHhcCCc
Confidence 964 57789998864
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=3.9e-10 Score=142.14 Aligned_cols=68 Identities=37% Similarity=0.736 Sum_probs=59.6
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
+..+.|++|||++ +++.++||+|||+||++||||||++ +.++|++|++||++
T Consensus 2 ~~~~~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~v 56 (373)
T PRK14301 2 SQRDYYEVLGVSR-------------------------DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEV 56 (373)
T ss_pred CCCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHH
Confidence 3468999999994 7899999999999999999999974 57899999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+|+. ++..||+||+.
T Consensus 57 L~d~~-----------------kr~~yD~~g~~ 72 (373)
T PRK14301 57 LRDAE-----------------KRARYDRFGHA 72 (373)
T ss_pred hcchh-----------------hhhhhhhcccc
Confidence 99964 57788888864
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=4.1e-10 Score=142.35 Aligned_cols=66 Identities=32% Similarity=0.669 Sum_probs=58.6
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLs 1579 (2592)
.+.|++|||+ +++++++||+|||+||++||||+|++ +.++|++|++||++|+
T Consensus 4 ~d~y~~Lgv~-------------------------~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 58 (380)
T PRK14297 4 KDYYEVLGLE-------------------------KGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLS 58 (380)
T ss_pred CChHHhhCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 5799999999 47899999999999999999999974 6789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 59 d~~-----------------~r~~yD~~G~~ 72 (380)
T PRK14297 59 DPQ-----------------KKAQYDQFGTA 72 (380)
T ss_pred CHh-----------------hhCchhhcCcc
Confidence 965 57788888864
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=4.3e-10 Score=141.37 Aligned_cols=66 Identities=35% Similarity=0.614 Sum_probs=58.5
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLs 1579 (2592)
.+.|++|||++ +++.++||+|||+||++||||||++ +.++|++|++||++|+
T Consensus 3 ~d~y~iLgv~~-------------------------~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (365)
T PRK14285 3 RDYYEILGLSK-------------------------GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLI 57 (365)
T ss_pred CCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 47899999994 7899999999999999999999974 6789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------kr~~yd~~g~~ 71 (365)
T PRK14285 58 DDN-----------------KRAQYDRFGHT 71 (365)
T ss_pred Ccc-----------------hhHHHHhcCcc
Confidence 964 57788888864
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=3.5e-10 Score=142.84 Aligned_cols=67 Identities=33% Similarity=0.605 Sum_probs=59.3
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLs 1579 (2592)
..+.|++|||++ +++.++||||||+||++||||+|+ ++.++|++|++|||+|+
T Consensus 4 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Ls 58 (378)
T PRK14283 4 KRDYYEVLGVDR-------------------------NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLS 58 (378)
T ss_pred cCChHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhc
Confidence 458999999994 789999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 59 d~~-----------------kR~~YD~~G~~ 72 (378)
T PRK14283 59 DDE-----------------KRQRYDQFGHA 72 (378)
T ss_pred hhH-----------------HHHHHhhhccc
Confidence 964 57788888854
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=4e-10 Score=142.18 Aligned_cols=67 Identities=42% Similarity=0.692 Sum_probs=59.2
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
..+.|+||||++ +++.++||||||+||++||||+|++ +.++|++|++||++|+
T Consensus 4 ~~d~y~iLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~ 58 (377)
T PRK14298 4 TRDYYEILGLSK-------------------------DASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLS 58 (377)
T ss_pred CCCHHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhc
Confidence 357999999994 7899999999999999999999964 7799999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 59 d~~-----------------kR~~YD~~G~~ 72 (377)
T PRK14298 59 DAE-----------------KRAQYDRFGHA 72 (377)
T ss_pred chH-----------------hhhhhhhcCcc
Confidence 965 57788888864
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=3.9e-10 Score=141.88 Aligned_cols=68 Identities=40% Similarity=0.696 Sum_probs=60.1
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
...+.|+||||++ +++.++||||||+||++||||+|++ +.++|++|++||++
T Consensus 2 ~~~d~y~~lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~v 56 (366)
T PRK14294 2 VKRDYYEILGVTR-------------------------DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEV 56 (366)
T ss_pred CCCChHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHH
Confidence 3468999999994 7899999999999999999999974 67899999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+|+. ++..||+||+.
T Consensus 57 L~d~~-----------------~r~~yD~~G~~ 72 (366)
T PRK14294 57 LSDPK-----------------KRGIYDQYGHE 72 (366)
T ss_pred hccHH-----------------HHHHHHhhccc
Confidence 99964 67889999864
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=5.3e-10 Score=141.58 Aligned_cols=66 Identities=38% Similarity=0.693 Sum_probs=58.5
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLs 1579 (2592)
.+.|+||||++ ++++++||||||+||++||||+|++ +.++|++|++|||+|+
T Consensus 5 ~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 59 (386)
T PRK14277 5 KDYYEILGVDR-------------------------NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILS 59 (386)
T ss_pred CCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhC
Confidence 57999999994 7899999999999999999999974 6789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 60 d~~-----------------kr~~yD~~G~~ 73 (386)
T PRK14277 60 DPQ-----------------KRAQYDQFGHA 73 (386)
T ss_pred CHH-----------------HHHHHHhhccc
Confidence 964 57788888864
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.1e-10 Score=140.67 Aligned_cols=66 Identities=36% Similarity=0.566 Sum_probs=58.7
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd 1580 (2592)
.+.|+||||+ ++++.++||||||+||++||||+|++ +.++|++|++|||+|+|
T Consensus 3 ~d~y~iLgv~-------------------------~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d 57 (378)
T PRK14278 3 RDYYGLLGVS-------------------------RNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSD 57 (378)
T ss_pred CCcceecCCC-------------------------CCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhch
Confidence 4689999998 47899999999999999999999986 67899999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+||+.
T Consensus 58 ~~-----------------~r~~YD~~G~~ 70 (378)
T PRK14278 58 PE-----------------KRRIVDLGGDP 70 (378)
T ss_pred hh-----------------hhhhhhccCCc
Confidence 64 57788888865
No 26
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.8e-10 Score=129.12 Aligned_cols=67 Identities=33% Similarity=0.664 Sum_probs=59.4
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
..+-|.+|||.+ +++.++|||+||+|+++|||||+|+ +.++|+.||.||++|
T Consensus 30 ~~~LYdVLgl~k-------------------------~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~IL 84 (279)
T KOG0716|consen 30 RLDLYDVLGLPK-------------------------TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAIL 84 (279)
T ss_pred hhHHHHHhCCCc-------------------------ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHh
Confidence 456899999984 7788999999999999999999875 789999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ||..||+||+.
T Consensus 85 sD~~-----------------kR~~YD~~g~~ 99 (279)
T KOG0716|consen 85 SDPT-----------------KRNVYDEYGEL 99 (279)
T ss_pred cChh-----------------hhhhHHHhhhH
Confidence 9964 78889999864
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=7.7e-10 Score=139.61 Aligned_cols=68 Identities=41% Similarity=0.766 Sum_probs=59.2
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
+..+.|+||||++ +++.++||||||+||++||||||++ +.++|++|++||++
T Consensus 2 ~~~d~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~ 56 (371)
T PRK10767 2 AKRDYYEVLGVSR-------------------------NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEV 56 (371)
T ss_pred CCCChHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3468999999994 7899999999999999999999974 67899999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+|+. ++..||+||..
T Consensus 57 L~d~~-----------------~r~~yd~~g~~ 72 (371)
T PRK10767 57 LSDPQ-----------------KRAAYDQYGHA 72 (371)
T ss_pred hcchh-----------------hhhHhhhcccc
Confidence 99964 56778888764
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=8.7e-10 Score=139.50 Aligned_cols=66 Identities=38% Similarity=0.670 Sum_probs=58.4
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd 1580 (2592)
.+.|++|||+. +++.++||||||+||++||||+|++ +.++|+.|++||++|+|
T Consensus 3 ~d~Y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd 57 (382)
T PRK14291 3 KDYYEILGVSR-------------------------NATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSD 57 (382)
T ss_pred CCHHHhhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 47899999994 7899999999999999999999974 78999999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+||+.
T Consensus 58 ~~-----------------kR~~YD~~g~~ 70 (382)
T PRK14291 58 PE-----------------KRKLYDQFGHA 70 (382)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 64 56788888864
No 29
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=9e-10 Score=139.76 Aligned_cols=65 Identities=43% Similarity=0.712 Sum_probs=58.1
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLsd 1580 (2592)
+.|+||||++ +++.++||||||+||++||||+|++ +.++|++|++||++|+|
T Consensus 2 d~y~iLgv~~-------------------------~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d 56 (391)
T PRK14284 2 DYYTILGVSK-------------------------TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD 56 (391)
T ss_pred CHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 5799999984 7899999999999999999999984 67899999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+||+.
T Consensus 57 ~~-----------------kR~~YD~~G~~ 69 (391)
T PRK14284 57 AQ-----------------KRESYDRYGKD 69 (391)
T ss_pred HH-----------------HHHHHHhcccc
Confidence 64 67889999864
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=1.3e-09 Score=138.44 Aligned_cols=66 Identities=39% Similarity=0.731 Sum_probs=58.1
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLs 1579 (2592)
.+.|+||||++ +++.++||||||+||++||||+|++ +.++|++|++|||+|+
T Consensus 3 ~d~y~iLgv~~-------------------------~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~ 57 (397)
T PRK14281 3 RDYYEVLGVSR-------------------------SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS 57 (397)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhh
Confidence 47899999994 7899999999999999999999974 5789999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||+||+.
T Consensus 58 d~~-----------------~r~~yD~~g~~ 71 (397)
T PRK14281 58 NDD-----------------KRRRYDQFGHA 71 (397)
T ss_pred hhh-----------------hhhhhhhccch
Confidence 964 56778888864
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=1.4e-09 Score=137.76 Aligned_cols=56 Identities=36% Similarity=0.655 Sum_probs=50.8
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
..+.|+||||++ ++++++||||||+||++||||+|++ +.++|++|++||++|
T Consensus 8 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL 62 (389)
T PRK14295 8 EKDYYKVLGVPK-------------------------DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVL 62 (389)
T ss_pred ccCHHHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHH
Confidence 357999999994 7899999999999999999999973 679999999999999
Q ss_pred hccc
Q 000052 1579 QATM 1582 (2592)
Q Consensus 1579 sd~~ 1582 (2592)
+|+.
T Consensus 63 ~d~~ 66 (389)
T PRK14295 63 SDEK 66 (389)
T ss_pred Cchh
Confidence 9975
No 32
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=2.5e-09 Score=135.60 Aligned_cols=67 Identities=33% Similarity=0.620 Sum_probs=59.1
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
..+.|++|||++ +++.+|||+|||+||++||||+|++ +.++|++|++||++|
T Consensus 4 ~~~~y~~Lgv~~-------------------------~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L 58 (386)
T PRK14289 4 KRDYYEVLGVSK-------------------------TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58 (386)
T ss_pred cCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 468999999994 7899999999999999999999974 678999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ++..||+||+.
T Consensus 59 ~d~~-----------------~R~~yD~~G~~ 73 (386)
T PRK14289 59 SDPD-----------------KRSRYDQFGHA 73 (386)
T ss_pred cCHH-----------------HHHHHHHhccc
Confidence 9964 56778888864
No 33
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.9e-09 Score=129.87 Aligned_cols=69 Identities=35% Similarity=0.696 Sum_probs=61.3
Q ss_pred CChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHH
Q 000052 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQK 1573 (2592)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~ 1573 (2592)
..+.|-|.+|+++ ++++.++||+||||+++.|||||..+ ++++|+.|++
T Consensus 6 ~~e~e~Ya~LNlp-------------------------kdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~ 60 (546)
T KOG0718|consen 6 LDEIELYALLNLP-------------------------KDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQR 60 (546)
T ss_pred cchhhHHHHhCCC-------------------------cccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHH
Confidence 3456899999999 47899999999999999999999753 7899999999
Q ss_pred HHHHhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1574 AYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1574 AYevLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|||+|+||+ |+..||.||+.
T Consensus 61 AyEVLsDp~-----------------kRaIYD~~G~q 80 (546)
T KOG0718|consen 61 AYEVLSDPQ-----------------KRAIYDNYGEQ 80 (546)
T ss_pred HHHHhcChH-----------------HHHHHHHhhhc
Confidence 999999975 78899999975
No 34
>PHA03102 Small T antigen; Reviewed
Probab=98.81 E-value=6.1e-09 Score=115.63 Aligned_cols=55 Identities=18% Similarity=0.489 Sum_probs=50.0
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCC--CHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLs 1579 (2592)
.+++|++|||++ ++ |.++||+|||++|++|||||+++ .++|++|++||++|+
T Consensus 4 ~~~l~~vLGl~~-------------------------~A~~s~~eIKkAYr~la~~~HPDkgg~-~e~~k~in~Ay~~L~ 57 (153)
T PHA03102 4 SKELMDLLGLPR-------------------------SAWGNLPLMRKAYLRKCLEFHPDKGGD-EEKMKELNTLYKKFR 57 (153)
T ss_pred HHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCch-hHHHHHHHHHHHHHh
Confidence 468999999995 67 89999999999999999999864 789999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
|+.
T Consensus 58 d~~ 60 (153)
T PHA03102 58 ESV 60 (153)
T ss_pred hHH
Confidence 965
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.80 E-value=3.7e-09 Score=130.32 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=57.8
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLs 1579 (2592)
..+.|++|||++ .++.++||||||+||++||||+|+ .+.++|+.|++||++|+
T Consensus 3 ~~d~y~~Lgv~~-------------------------~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~ 57 (306)
T PRK10266 3 LKDYYAIMGVKP-------------------------TDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLS 57 (306)
T ss_pred cCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhh
Confidence 357899999994 678999999999999999999996 47899999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
|+. ++..||+||.
T Consensus 58 ~~~-----------------kr~~yD~~g~ 70 (306)
T PRK10266 58 DEQ-----------------RRAEYDQLWQ 70 (306)
T ss_pred hHH-----------------HHHHHHHhhc
Confidence 964 5677888874
No 36
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=4.4e-09 Score=132.51 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=58.1
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevL 1578 (2592)
.+.|+||||++ +++.++||+|||+||++||||+|++ ++++|++|++||++|
T Consensus 3 ~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (365)
T PRK14290 3 KDYYKILGVDR-------------------------NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL 57 (365)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHh
Confidence 36899999994 7899999999999999999999974 569999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ++..||+||+.
T Consensus 58 ~d~~-----------------~r~~yd~~G~~ 72 (365)
T PRK14290 58 SDPQ-----------------KRRQYDQTGTV 72 (365)
T ss_pred cChh-----------------hhhhhcccCCc
Confidence 9964 57788888864
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=4.4e-09 Score=132.82 Aligned_cols=66 Identities=32% Similarity=0.578 Sum_probs=58.3
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd 1580 (2592)
.+.|+||||++ ++|.++||||||+||++||||+|+. +.++|++|++||++|+|
T Consensus 3 ~~~y~iLgv~~-------------------------~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d 57 (372)
T PRK14300 3 QDYYQILGVSK-------------------------TASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKD 57 (372)
T ss_pred CChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 47899999984 7899999999999999999999964 67899999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+||+.
T Consensus 58 ~~-----------------~r~~yD~~G~~ 70 (372)
T PRK14300 58 EQ-----------------KRAAYDRFGHD 70 (372)
T ss_pred Hh-----------------HhhHHHhcccc
Confidence 64 57788888864
No 38
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.79 E-value=2.2e-08 Score=106.23 Aligned_cols=99 Identities=25% Similarity=0.286 Sum_probs=70.4
Q ss_pred hhhhhHHHHHhhhcCCCCCChhhh-HHHHHHHHHHHH-HHhccCCCCCChHHHHHHhcccCCCCCCCCcccCcccccccc
Q 000052 1455 WCHRYYLRNLCDEIQFPNWPIVEH-VEFLQSLLVMWR-EELTRRPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSN 1532 (2592)
Q Consensus 1455 fc~~yYLr~l~d~~rfP~wpI~dp-v~fL~sll~~wr-~e~~~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~ 1532 (2592)
...+|.+|-+-....+++-.+..| .+|..++-...- ..+..-...|+.++||+||||++
T Consensus 15 l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~------------------- 75 (116)
T PTZ00100 15 LAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISP------------------- 75 (116)
T ss_pred HHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCC-------------------
Confidence 345677777766656565444434 344444322211 11333345678899999999995
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000052 1533 ISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1533 ~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLs 1579 (2592)
+++.++||++||+|+++||||++ +..+.|++|++|||+|.
T Consensus 76 ------~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 76 ------TASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred ------CCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 67889999999999999999996 45789999999999985
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.1e-09 Score=127.60 Aligned_cols=56 Identities=39% Similarity=0.687 Sum_probs=51.8
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
..|.|.+|||++ .+++.+|+||||+.|++|||||||+ +.++|+.+.+||++|
T Consensus 4 ~~dyY~lLgi~~-------------------------~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL 58 (296)
T KOG0691|consen 4 DTDYYDLLGISE-------------------------DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVL 58 (296)
T ss_pred cchHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 568999999995 6789999999999999999999986 889999999999999
Q ss_pred hccc
Q 000052 1579 QATM 1582 (2592)
Q Consensus 1579 sd~~ 1582 (2592)
+|+.
T Consensus 59 ~D~~ 62 (296)
T KOG0691|consen 59 SDEE 62 (296)
T ss_pred cCHH
Confidence 9975
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=6.1e-09 Score=131.56 Aligned_cols=65 Identities=37% Similarity=0.679 Sum_probs=58.4
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhcc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd~ 1581 (2592)
+.|++|||++ +++.++||+|||+||++||||+|++ +.++|+.|++||++|+|+
T Consensus 3 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 3 DYYELLGVSR-------------------------TASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcch
Confidence 5799999994 7899999999999999999999975 789999999999999996
Q ss_pred ccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1582 ~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
. ++..||+||+.
T Consensus 58 ~-----------------~r~~yd~~G~~ 69 (371)
T PRK14292 58 E-----------------KRAHYDRFGTA 69 (371)
T ss_pred h-----------------hhhhHhhcCCc
Confidence 4 57789998865
No 41
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.78 E-value=5.5e-09 Score=131.25 Aligned_cols=65 Identities=42% Similarity=0.715 Sum_probs=56.8
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhcc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLsd~ 1581 (2592)
+.|++|||++ +++.++||+|||+||++||||+|+ ++.++|++|++||++|+|+
T Consensus 1 d~y~~Lgv~~-------------------------~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSK-------------------------DASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhCh
Confidence 3699999994 789999999999999999999996 4788999999999999996
Q ss_pred ccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1582 ~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
. ++..||+||..
T Consensus 56 ~-----------------~R~~yd~~g~~ 67 (354)
T TIGR02349 56 E-----------------KRAQYDQFGHA 67 (354)
T ss_pred H-----------------HHHhhhhcccc
Confidence 4 56778888754
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.77 E-value=6.6e-09 Score=137.24 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=59.8
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHh
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevL 1578 (2592)
...+.|+||||++ +++..+||||||+||++|||||||+ +.++|+.|++||++|
T Consensus 571 ~d~dYYdILGVs~-------------------------dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVL 625 (1136)
T PTZ00341 571 PDTLFYDILGVGV-------------------------NADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQIL 625 (1136)
T ss_pred CCCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHh
Confidence 3468999999995 7899999999999999999999985 678999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. +|..||+||..
T Consensus 626 SDp~-----------------kRk~YD~~G~~ 640 (1136)
T PTZ00341 626 GDID-----------------KKKMYNKFGYD 640 (1136)
T ss_pred CCHH-----------------HHHHHhhcccc
Confidence 9975 56778888864
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.75 E-value=1.6e-08 Score=95.30 Aligned_cols=53 Identities=43% Similarity=0.771 Sum_probs=48.7
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevLs 1579 (2592)
++|++|||++ +++.++||++|++++++||||++++ ..+.|+.|++||++|+
T Consensus 2 ~~y~vLgl~~-------------------------~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~ 56 (60)
T smart00271 2 DYYEILGVPR-------------------------DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLS 56 (60)
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHc
Confidence 5799999985 5788999999999999999999984 7889999999999999
Q ss_pred cc
Q 000052 1580 AT 1581 (2592)
Q Consensus 1580 d~ 1581 (2592)
|+
T Consensus 57 ~~ 58 (60)
T smart00271 57 DP 58 (60)
T ss_pred CC
Confidence 86
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.74 E-value=1.6e-08 Score=93.54 Aligned_cols=52 Identities=46% Similarity=0.843 Sum_probs=47.5
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLsd 1580 (2592)
+.|++||++. .++.++||++||+|+++||||++++ ..+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~-------------------------~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP-------------------------DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 3799999984 6788999999999999999999986 78999999999999986
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=9.3e-09 Score=130.01 Aligned_cols=66 Identities=38% Similarity=0.700 Sum_probs=58.4
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd 1580 (2592)
.+.|+||||++ +++.++||+|||+||++||||+|++ +.++|+.|++||++|+|
T Consensus 3 ~d~y~vLgv~~-------------------------~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~ 57 (374)
T PRK14293 3 ADYYEILGVSR-------------------------DADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSD 57 (374)
T ss_pred CChhhhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 36899999984 7899999999999999999999974 78999999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+||+.
T Consensus 58 ~~-----------------~R~~yd~~g~~ 70 (374)
T PRK14293 58 PE-----------------TRARYDQFGEA 70 (374)
T ss_pred hH-----------------HHHHHhhcccc
Confidence 64 57788888864
No 46
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9e-09 Score=125.52 Aligned_cols=56 Identities=39% Similarity=0.631 Sum_probs=51.2
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
.++.|+||||+ ++++..|||+||++||++||||.|++ +.++|++|.+|||+|+
T Consensus 42 ~~d~Y~vLgv~-------------------------~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLs 96 (288)
T KOG0715|consen 42 KEDYYKVLGVS-------------------------RNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILS 96 (288)
T ss_pred CcchhhhhCcC-------------------------CCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhc
Confidence 34899999999 47899999999999999999999975 7899999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
|+.
T Consensus 97 d~e 99 (288)
T KOG0715|consen 97 DEE 99 (288)
T ss_pred CHH
Confidence 965
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.71 E-value=8e-09 Score=98.76 Aligned_cols=54 Identities=37% Similarity=0.691 Sum_probs=48.9
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchH----HHHHHHHHHHHHhh
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGR----EKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~----ekF~~I~~AYevLs 1579 (2592)
++|+||||++ +++.++||++|+++++++|||++++.. +.|+.|++||++|+
T Consensus 1 ~~y~iLgl~~-------------------------~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~ 55 (64)
T PF00226_consen 1 NPYEILGLPP-------------------------DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILS 55 (64)
T ss_dssp HHHHHCTSTT-------------------------TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHCCCCC-------------------------CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhC
Confidence 5799999995 678999999999999999999988644 89999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
++.
T Consensus 56 ~~~ 58 (64)
T PF00226_consen 56 DPE 58 (64)
T ss_dssp SHH
T ss_pred CHH
Confidence 974
No 48
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.6e-08 Score=115.93 Aligned_cols=55 Identities=35% Similarity=0.670 Sum_probs=51.0
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc-----hHHHHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE-----GREKFLAVQKAYER 1577 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~-----~~ekF~~I~~AYev 1577 (2592)
.+.|+||||. +++++.+|||||+|||++||||+|++ ++++|+.++.||++
T Consensus 14 ~d~YevLGVe-------------------------r~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~i 68 (264)
T KOG0719|consen 14 KDLYEVLGVE-------------------------RDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQI 68 (264)
T ss_pred cCHHHHhhhc-------------------------ccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4789999998 58899999999999999999999974 88999999999999
Q ss_pred hhccc
Q 000052 1578 LQATM 1582 (2592)
Q Consensus 1578 Lsd~~ 1582 (2592)
|+|.+
T Consensus 69 LsDee 73 (264)
T KOG0719|consen 69 LSDEE 73 (264)
T ss_pred hhHHH
Confidence 99965
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.7e-08 Score=113.56 Aligned_cols=56 Identities=38% Similarity=0.679 Sum_probs=50.1
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevL 1578 (2592)
.-|.|+||||++ .+++.|||||||+|.+||||||+|. .++.|.+|.+||+.|
T Consensus 98 ~fDPyEILGl~p-------------------------gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aL 152 (230)
T KOG0721|consen 98 KFDPYEILGLDP-------------------------GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQAL 152 (230)
T ss_pred cCCcHHhhCCCC-------------------------CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHh
Confidence 346899999996 6799999999999999999999863 688999999999999
Q ss_pred hccc
Q 000052 1579 QATM 1582 (2592)
Q Consensus 1579 sd~~ 1582 (2592)
+|+.
T Consensus 153 TD~~ 156 (230)
T KOG0721|consen 153 TDKK 156 (230)
T ss_pred cchh
Confidence 9964
No 50
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.66 E-value=8.7e-08 Score=116.11 Aligned_cols=91 Identities=32% Similarity=0.477 Sum_probs=68.9
Q ss_pred hHHHHHhhhcCCCCCChhhhHHHHHHHHHHHHHH--hc---------cCCCCCChHHHHHHhcccCCCCCCCCcccCccc
Q 000052 1459 YYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREE--LT---------RRPMDLSEEEACKILEISLDDVSSDDSHKSYSS 1527 (2592)
Q Consensus 1459 yYLr~l~d~~rfP~wpI~dpv~fL~sll~~wr~e--~~---------~~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~ 1527 (2592)
.+|+.+|+.+.++. .+| ..+..++..+ .. +.+..++.++||++|||++
T Consensus 152 ~~L~~Ia~~Lgis~------~df-~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~-------------- 210 (267)
T PRK09430 152 QVLYVIAEELGFSR------FQF-DQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSE-------------- 210 (267)
T ss_pred HHHHHHHHHcCCCH------HHH-HHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCC--------------
Confidence 47899999999873 333 3444444431 10 1122467899999999995
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC----------chHHHHHHHHHHHHHhhcc
Q 000052 1528 EEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1528 ~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp----------~~~ekF~~I~~AYevLsd~ 1581 (2592)
++|.++||++||+|+++|||||+. .+.++|++|++||++|+..
T Consensus 211 -----------~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 211 -----------SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred -----------CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999963 1578999999999999973
No 51
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.62 E-value=0.00077 Score=98.28 Aligned_cols=316 Identities=17% Similarity=0.179 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
+.+..+|.++..++.+....+...+.++.|.++|... +..+|..++..|..++. |..=...|+..+ .+..|..+|
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaG-aIP~LV~LL 497 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAG-GIPPLVQLL 497 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHHH
Confidence 4456788888888888888888888999999999863 56899999999988885 444334566645 788999999
Q ss_pred hhC-cchHHHHHHHHHHhhcchHHHHHHH-HcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000052 2106 HYA-PACREGVLHVLYALASTPELAWAAA-KHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2592)
Q Consensus 2106 ~~~-p~~~~~vL~~L~aL~S~~~LVkqal-~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsK 2183 (2592)
.+. +.....+.-+|..++.+++=.+..+ +.|++..|+++|.+. .+..|..++..|..+..+ |..-.+
T Consensus 498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~---~d~~~I---- 566 (2102)
T PLN03200 498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRT---ADAATI---- 566 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhc---cchhHH----
Confidence 643 4555668888888887665444544 779999999999764 578889999999998653 211111
Q ss_pred hCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHH--HHHHHhcCCcccccCCcchhhhcccCC
Q 000052 2184 FLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASD--LYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2592)
Q Consensus 2184 fLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~--~~~~Q~~~p~~~W~lPe~~~~~~~l~~ 2261 (2592)
+ ..+.+|.+.. ..++..+-..|..+..- ....+.++ ..
T Consensus 567 -------------~--~Lv~LLlsdd--------~~~~~~aL~vLgnIlsl~~~~d~~~~g----------------~~- 606 (2102)
T PLN03200 567 -------------S--QLTALLLGDL--------PESKVHVLDVLGHVLSVASLEDLVREG----------------SA- 606 (2102)
T ss_pred -------------H--HHHHHhcCCC--------hhHHHHHHHHHHHHHhhcchhHHHHHh----------------hh-
Confidence 1 1345554432 23333333333333220 00000000 00
Q ss_pred CcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000052 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2592)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~ 2341 (2592)
+ .+-++.+++++...+ .+.-+....++-.++..++...+.+...|.+
T Consensus 607 --------------~------------~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~d~~~avv~agaI 653 (2102)
T PLN03200 607 --------------A------------NDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQDLCESLATDEII 653 (2102)
T ss_pred --------------c------------cccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCChHHHHHHHHcCCH
Confidence 0 045677777776542 2233456678888999999999999999999
Q ss_pred HHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC--ChhHHHHHhhcCCCCC
Q 000052 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA--STTCAEAMAATSTGTP 2419 (2592)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~--s~~Cv~ala~~~~~~p 2419 (2592)
|.++.+|.+.+. .+++.+-..|-.|+. ++.-..++.+-++
T Consensus 654 pPLV~LLss~~~-----------------------------------~v~keAA~AL~nL~~~~~~~q~~~~v~~Ga--- 695 (2102)
T PLN03200 654 NPCIKLLTNNTE-----------------------------------AVATQSARALAALSRSIKENRKVSYAAEDA--- 695 (2102)
T ss_pred HHHHHHHhcCCh-----------------------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHcCC---
Confidence 999999975331 234455555555553 3334445555556
Q ss_pred cchHHHHHHhcccC-chH-HHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhc
Q 000052 2420 QVVPILMKAIGWQG-GSI-LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2420 ~~~~~l~~~m~~~~-~~~-la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~ 2475 (2592)
|++|++.+.... ++. .|+++|..+++.+ +-...+.+.|.|+.|.++|..
T Consensus 696 --V~pL~~LL~~~d~~v~e~Al~ALanLl~~~-----e~~~ei~~~~~I~~Lv~lLr~ 746 (2102)
T PLN03200 696 --IKPLIKLAKSSSIEVAEQAVCALANLLSDP-----EVAAEALAEDIILPLTRVLRE 746 (2102)
T ss_pred --HHHHHHHHhCCChHHHHHHHHHHHHHHcCc-----hHHHHHHhcCcHHHHHHHHHh
Confidence 888888887754 333 8889999999753 245667788999999999963
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.44 E-value=1.7e-07 Score=122.22 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=57.1
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhhc
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLsd 1580 (2592)
.+.|+||||++ +++..+||++||+|+++|||||+++ +.++|++|++||++|+|
T Consensus 2 ~DYYeVLGVs~-------------------------dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 2 RDYYEVLGIDR-------------------------DADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSN 56 (871)
T ss_pred CChhHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCC
Confidence 36899999994 7899999999999999999999874 67799999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. +|..||+||..
T Consensus 57 P~-----------------KRa~YD~fG~a 69 (871)
T TIGR03835 57 PK-----------------KRANYDKYGHD 69 (871)
T ss_pred HH-----------------HHHHHhhhccc
Confidence 64 56778888753
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=3.1e-07 Score=110.05 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=55.6
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYE 1576 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~AYe 1576 (2592)
.+.|+||||. ++++..||.|||||||+|||||.-.+ ++.+|..|..|-|
T Consensus 394 RDYYKILGVk-------------------------RnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKE 448 (504)
T KOG0624|consen 394 RDYYKILGVK-------------------------RNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKE 448 (504)
T ss_pred chHHHHhhhc-------------------------ccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHH
Confidence 5799999998 68999999999999999999998754 6789999999999
Q ss_pred HhhccccCCCCCChhh
Q 000052 1577 RLQATMQGLQGPQPWR 1592 (2592)
Q Consensus 1577 vLsd~~~~~~gp~~~~ 1592 (2592)
||+||+.|...++..+
T Consensus 449 VLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 449 VLSDPEKRRQFDNGED 464 (504)
T ss_pred hhcCHHHHhhccCCCC
Confidence 9999987754444333
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.5e-07 Score=108.58 Aligned_cols=56 Identities=27% Similarity=0.597 Sum_probs=50.6
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYevLs 1579 (2592)
.+++|++||++ +.++..+|.||||+||++||||+|++ +++.|+.|..|||+|.
T Consensus 32 ~enCYdVLgV~-------------------------Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 32 AENCYDVLGVA-------------------------REANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred chhHHHHhhhh-------------------------hhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 57899999999 45688999999999999999999875 7788999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
|..
T Consensus 87 d~e 89 (329)
T KOG0722|consen 87 DNE 89 (329)
T ss_pred chh
Confidence 965
No 55
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.4e-07 Score=105.33 Aligned_cols=56 Identities=43% Similarity=0.694 Sum_probs=50.7
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYev 1577 (2592)
..+.|+||||++ +++..+||++||++|++||||+|++ +.++|+.|++||++
T Consensus 5 ~~~~y~iLgv~~-------------------------~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~v 59 (237)
T COG2214 5 LLDYYEILGVPP-------------------------NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEI 59 (237)
T ss_pred hhhHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 457899999994 7899999999999999999999985 45999999999999
Q ss_pred hhccc
Q 000052 1578 LQATM 1582 (2592)
Q Consensus 1578 Lsd~~ 1582 (2592)
|+|+.
T Consensus 60 Lsd~~ 64 (237)
T COG2214 60 LSDPE 64 (237)
T ss_pred hhCHH
Confidence 99975
No 56
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.13 E-value=2.6e-06 Score=97.20 Aligned_cols=56 Identities=21% Similarity=0.473 Sum_probs=47.6
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AY 1575 (2592)
+.|++||++++ -++|..+||++||+|+++||||+.++ +.++|..|++||
T Consensus 2 ~yf~llgl~~~-----------------------~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY 58 (171)
T PRK05014 2 DYFTLFGLPAR-----------------------YDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAY 58 (171)
T ss_pred CHHHHCCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 47999999852 25788999999999999999999753 345889999999
Q ss_pred HHhhccc
Q 000052 1576 ERLQATM 1582 (2592)
Q Consensus 1576 evLsd~~ 1582 (2592)
++|+||.
T Consensus 59 ~~L~dp~ 65 (171)
T PRK05014 59 QTLKHPL 65 (171)
T ss_pred HHHCChh
Confidence 9999975
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.3e-06 Score=108.79 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=55.8
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLs 1579 (2592)
.-|||.+||+.. ++|+++|||.|||+|+.-|||||. .+.|.|+.++.|||+|+
T Consensus 234 ~~daYsvlGl~~-------------------------d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 234 ILDAYSALGLPS-------------------------DCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG 288 (490)
T ss_pred CCCchhhcCCCC-------------------------CCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence 567999999984 679999999999999999999995 58999999999999999
Q ss_pred ccccCCCCCC
Q 000052 1580 ATMQGLQGPQ 1589 (2592)
Q Consensus 1580 d~~~~~~gp~ 1589 (2592)
|+..|..|+.
T Consensus 289 ~~~kR~eYd~ 298 (490)
T KOG0720|consen 289 DSVKRKEYDL 298 (490)
T ss_pred chhhhhHHHH
Confidence 9876666554
No 58
>PHA02624 large T antigen; Provisional
Probab=98.12 E-value=2.8e-06 Score=110.60 Aligned_cols=56 Identities=23% Similarity=0.487 Sum_probs=50.0
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCC--CHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI--DEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLs 1579 (2592)
..++|++|||++ ++ +..+||+|||++|++|||||++ ..++|++|++||++|+
T Consensus 10 ~~elyelLGL~~-------------------------~A~gs~~eIKkAYRkLAkkyHPDKgG-deekfk~Ln~AYevL~ 63 (647)
T PHA02624 10 SKELMDLLGLPM-------------------------AAWGNLPLMRKAYLRKCKEYHPDKGG-DEEKMKRLNSLYKKLQ 63 (647)
T ss_pred HHHHHHHcCCCC-------------------------CCCCCHHHHHHHHHHHHHHHCcCCCC-cHHHHHHHHHHHHHHh
Confidence 468999999994 67 8899999999999999999975 4789999999999999
Q ss_pred cccc
Q 000052 1580 ATMQ 1583 (2592)
Q Consensus 1580 d~~~ 1583 (2592)
|+..
T Consensus 64 d~~k 67 (647)
T PHA02624 64 EGVK 67 (647)
T ss_pred cHHH
Confidence 9653
No 59
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.07 E-value=3.2e-06 Score=96.06 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=47.0
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHH------HHHHHHHHHHH
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGRE------KFLAVQKAYER 1577 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~e------kF~~I~~AYev 1577 (2592)
+.|++||++++ -++|..+|+++||+|+++|||||+....+ .|..|++||++
T Consensus 3 ~yf~llgl~~~-----------------------f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~ 59 (166)
T PRK01356 3 NYFQLLGLPQE-----------------------YNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYST 59 (166)
T ss_pred CHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999952 15789999999999999999999875333 46799999999
Q ss_pred hhccc
Q 000052 1578 LQATM 1582 (2592)
Q Consensus 1578 Lsd~~ 1582 (2592)
|+||.
T Consensus 60 L~dp~ 64 (166)
T PRK01356 60 LKDAL 64 (166)
T ss_pred hCCHH
Confidence 99975
No 60
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.00 E-value=6.2e-06 Score=94.52 Aligned_cols=57 Identities=19% Similarity=0.390 Sum_probs=47.7
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~A 1574 (2592)
.+.|++||++++ -++|..+|+++||+|++++|||+++. +.+.+..||+|
T Consensus 6 ~dyf~llglp~~-----------------------f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~A 62 (176)
T PRK03578 6 DDHFSLFGLPAR-----------------------FALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEA 62 (176)
T ss_pred CCHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999952 25788999999999999999999863 22346899999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|++|+||.
T Consensus 63 Y~tL~~p~ 70 (176)
T PRK03578 63 YQTLRDPL 70 (176)
T ss_pred HHHhCChh
Confidence 99999975
No 61
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.00 E-value=5.4e-06 Score=94.71 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=48.7
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~A 1574 (2592)
.+.|++||+++. -.+|..+|+++||+|+++||||++.+ +.++|..||+|
T Consensus 4 ~~~F~l~~l~~~-----------------------f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~A 60 (173)
T PRK00294 4 PCHFALFDLQPS-----------------------FRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEA 60 (173)
T ss_pred CChhhhcCcCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 457899999862 26789999999999999999999864 34579999999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|++|+||.
T Consensus 61 Y~~L~~p~ 68 (173)
T PRK00294 61 YQTLKSPP 68 (173)
T ss_pred HHHhCChh
Confidence 99999975
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=6.1e-06 Score=99.65 Aligned_cols=65 Identities=45% Similarity=0.778 Sum_probs=54.6
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCch----HHHHHHHHHHHHHh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEG----REKFLAVQKAYERL 1578 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~----~ekF~~I~~AYevL 1578 (2592)
.++|+||+|.. .+++.+|++|||++|++||||||++. .++|+++.+||++|
T Consensus 3 ~d~~~~l~i~~-------------------------~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~l 57 (306)
T KOG0714|consen 3 KDYYKILGIAR-------------------------SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVL 57 (306)
T ss_pred ccHHHHhCccc-------------------------cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhcccccc
Confidence 46899999983 55666999999999999999999863 34799999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
+|+. ++..|++||+
T Consensus 58 s~~~-----------------kr~~~d~~~~ 71 (306)
T KOG0714|consen 58 SDPK-----------------KRKIYDQYGE 71 (306)
T ss_pred CCHH-----------------HhhhccccCc
Confidence 9964 5677888886
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.3e-05 Score=99.02 Aligned_cols=62 Identities=39% Similarity=0.581 Sum_probs=53.3
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHh
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERL 1578 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevL 1578 (2592)
.+-|+||||+ +++++.+|||+|||+|+.||||+|.+ ++.+|+++-+||.+|
T Consensus 373 kd~ykilGi~-------------------------~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il 427 (486)
T KOG0550|consen 373 KDWYKILGIS-------------------------RNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTIL 427 (486)
T ss_pred hhHHHHhhhh-------------------------hhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHh
Confidence 4679999998 57889999999999999999999975 566999999999999
Q ss_pred hccccCCCCCC
Q 000052 1579 QATMQGLQGPQ 1589 (2592)
Q Consensus 1579 sd~~~~~~gp~ 1589 (2592)
+|+.++..++.
T Consensus 428 ~d~~kr~r~ds 438 (486)
T KOG0550|consen 428 SDPMKRVRFDS 438 (486)
T ss_pred cCHHHHhhccc
Confidence 99876544443
No 64
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.88 E-value=0.0077 Score=88.45 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCC-hhHHHHHHhhchhHHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
+.+..||.||-..+.+....+...|.++.+..+|.. +++.+|..|..+|..+..+ .+..+.+.+.+ ++..|+.+|
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS---~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL 240 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS---GNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHH
Confidence 446789999999998887766777889999999975 4578899999988665544 66777787655 789999999
Q ss_pred hh--CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhc-CCCC----CCcHHHHHHHHHHHHHHhcCC
Q 000052 2106 HY--APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLL-PSQQ----ETPLQQRAAAASLLGKLVGQP 2171 (2592)
Q Consensus 2106 ~~--~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~-~~~e----~~~~~~R~~aA~lL~kM~~Dk 2171 (2592)
.+ .+..+..+.-+|..+++ +++..+..++.||+..|++++. ++++ ..+...++.++-.|+-+..++
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 64 23556778888888898 5789999999999999999886 3321 134566888999999988874
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.79 E-value=1.5e-05 Score=98.31 Aligned_cols=55 Identities=38% Similarity=0.646 Sum_probs=48.8
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~A 1574 (2592)
-|.|+||||+. ..++.+||++||+|.+||||||.+. -+|+++.|++|
T Consensus 98 fDPyEILGI~~-------------------------~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkA 152 (610)
T COG5407 98 FDPYEILGIDQ-------------------------DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKA 152 (610)
T ss_pred CChHHhhcccC-------------------------CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHH
Confidence 46899999994 6689999999999999999999863 57899999999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|+.|+|..
T Consensus 153 Y~~lTd~k 160 (610)
T COG5407 153 YGLLTDKK 160 (610)
T ss_pred HHhhhhHH
Confidence 99999963
No 66
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.66 E-value=0.011 Score=80.56 Aligned_cols=397 Identities=19% Similarity=0.226 Sum_probs=220.0
Q ss_pred hHHHHHHHHHhhhhccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHh
Q 000052 1642 PLLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQ 1721 (2592)
Q Consensus 1642 ~ll~~A~EL~~~Tv~~S~lN~eEL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~ 1721 (2592)
.++..+.-+ .+-++.-..+...+++.|++..|-++++|= ...+...+++++..+|-|.+++..|.+
T Consensus 264 qLlrv~~~l-LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-------------n~ellil~v~fLkkLSi~~ENK~~m~~ 329 (708)
T PF05804_consen 264 QLLRVAFYL-LLNLAEDPRVELKMVNKGIVSLLVKCLDRE-------------NEELLILAVTFLKKLSIFKENKDEMAE 329 (708)
T ss_pred HHHHHHHHH-HHHHhcChHHHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444332 223344455677778889988887777632 124566788899999999999999987
Q ss_pred hcchHHHHHHhhccccchhHHHHHHHHHHHHhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHH
Q 000052 1722 FSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAK 1801 (2592)
Q Consensus 1722 ~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivk 1801 (2592)
.. ++.-+++++.-++ ..++..+|..+.+++-|.+++.+|.+.|++..|..+|.+.+ . ...
T Consensus 330 ~g-iV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~--------------~~v-- 389 (708)
T PF05804_consen 330 SG-IVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--F--------------REV-- 389 (708)
T ss_pred cC-CHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--h--------------HHH--
Confidence 64 6677888887544 47899999999999999999999999999999999985311 1 111
Q ss_pred HHHHHHHHHHHHHhhCcCCCCCCCCccHHHHHHH--HHhccHHHHHHhhcCCh-------HHHHHHhhccCcCcccccch
Q 000052 1802 NMHAVRAAQALSRLSGLCSNGISIPYNEAAASAL--RALLTPKLASLLKDQIP-------KNLLSKLNTNLESPEIIWNS 1872 (2592)
Q Consensus 1802 n~lAk~Al~aL~rL~g~~~d~~~~P~n~~v~~~L--~klLtP~l~~~L~d~~p-------~~~L~~LnSn~EnPeLIWnn 1872 (2592)
++..|..| +.+. ..+..+ +..+ |.++++|-..+. -.++.-+-.+.+|-++|=.+
T Consensus 390 ------al~iLy~L---S~dd-------~~r~~f~~TdcI-p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g 452 (708)
T PF05804_consen 390 ------ALKILYNL---SMDD-------EARSMFAYTDCI-PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG 452 (708)
T ss_pred ------HHHHHHHh---ccCH-------hhHHHHhhcchH-HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence 11222222 1111 011111 0111 333443333211 12333345555555554433
Q ss_pred hHHHHHHHHHHHHHhccCCCCCcccCCccccccccccCCcEEeeEEEEeeccCCCCCCCChHHHHHHHHHHHHHHhhccc
Q 000052 1873 STRAELLKFVDQQRASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPDFEITEPEAFCVALIDFISYLVHNQS 1952 (2592)
Q Consensus 1873 ~tRaEL~e~L~~q~~~~~~~~~w~l~~~~~F~Ys~l~~ELvVGGVYLRlyneqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~ 1952 (2592)
+--..|.+..-+ +.+ +--..+. |=.-.+++ + -+. ...+|+..++.-..
T Consensus 453 ~gL~~L~~ra~~-----~~D-----~lLlKlI---------------RNiS~h~~-~---~k~---~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 453 NGLQSLMKRALK-----TRD-----PLLLKLI---------------RNISQHDG-P---LKE---LFVDFIGDLAKIVS 500 (708)
T ss_pred CcHHHHHHHHHh-----ccc-----HHHHHHH---------------HHHHhcCc-h---HHH---HHHHHHHHHHHHhh
Confidence 222222221110 000 0000000 00000000 0 000 01123333221110
Q ss_pred CCCCcccccccccccchhhhhccccCCCCCCccccCCCCcccCccccccccccccccccccccCcchHHHHHHHHHHHHH
Q 000052 1953 ATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTS 2032 (2592)
Q Consensus 1953 ~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~s~~~s~~~~~~~ed~e~l~~l~maL~A 2032 (2592)
.. ++.+. +.-++-.
T Consensus 501 ~~---------------------------------------------------------------~~ee~---~vE~LGi 514 (708)
T PF05804_consen 501 SG---------------------------------------------------------------DSEEF---VVECLGI 514 (708)
T ss_pred cC---------------------------------------------------------------CcHHH---HHHHHHH
Confidence 00 00111 1223334
Q ss_pred HHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhCcchH
Q 000052 2033 LQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACR 2112 (2592)
Q Consensus 2033 L~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p~~~ 2112 (2592)
|.|+=-.+.+-+..+..++-++-|-..|... ...+.+..-+..++..++....|..-++..+ ++..|..+|....+--
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sg-li~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPG-ASEDDLLLEVVILLGTLASDPECAPLLAKSG-LIPTLIELLNAKQEDD 592 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCC-CCChHHHHHHHHHHHHHHCCHHHHHHHHhCC-hHHHHHHHHHhhCchH
Confidence 4444333333333444444444455555433 2345677778888899999999999888755 7788888887655444
Q ss_pred HHHHHH---HHHhhcchHHHHHHHH-cCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc-CCCCChHHHHHHHhhCcH
Q 000052 2113 EGVLHV---LYALASTPELAWAAAK-HGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG-QPMHGPRVAITLARFLPD 2187 (2592)
Q Consensus 2113 ~~vL~~---L~aL~S~~~LVkqal~-~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~-DklhGPrV~~~LsKfLP~ 2187 (2592)
+.++++ ++.+..+++-....++ .+.+-||++++-+ .++.+|..|-..|.-++. |+-+|.||+..=-+.-=.
T Consensus 593 E~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d----~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~ 668 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHD----KNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNA 668 (708)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHH
Confidence 555554 5666777776666655 6777899999975 378999999888877775 666777766544444334
Q ss_pred HHHHHH
Q 000052 2188 GLVSVI 2193 (2592)
Q Consensus 2188 ~fv~am 2193 (2592)
-.++.+
T Consensus 669 ~WLe~v 674 (708)
T PF05804_consen 669 QWLEMV 674 (708)
T ss_pred HHHHHH
Confidence 444444
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0002 Score=84.01 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=50.6
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCC-----CchHHHHHHHHHHHH
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKN-----PEGREKFLAVQKAYE 1576 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDkn-----p~~~ekF~~I~~AYe 1576 (2592)
..+-|.+||++. |.-.+++..|.++.++.+.+|||||. .+.++.|+-|+.|||
T Consensus 42 ~~DlYa~lgLsk----------------------yR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~e 99 (379)
T COG5269 42 KVDLYALLGLSK----------------------YRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKARE 99 (379)
T ss_pred hhhHHHHhchHh----------------------hhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHH
Confidence 357899999873 44567888999999999999999997 457999999999999
Q ss_pred Hhhccc
Q 000052 1577 RLQATM 1582 (2592)
Q Consensus 1577 vLsd~~ 1582 (2592)
+|+|+.
T Consensus 100 vL~D~~ 105 (379)
T COG5269 100 VLGDRK 105 (379)
T ss_pred HhccHH
Confidence 999964
No 68
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.49 E-value=9.9e-05 Score=83.47 Aligned_cols=44 Identities=27% Similarity=0.568 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHHHHhhccc
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQATM 1582 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AYevLsd~~ 1582 (2592)
.+|..+|+++||+|+++||||+.+. +.+.|..|++||++|+||.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~ 53 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPL 53 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChh
Confidence 3577899999999999999999643 4578999999999999975
No 69
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00035 Score=79.35 Aligned_cols=54 Identities=37% Similarity=0.714 Sum_probs=47.8
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevLs 1579 (2592)
++|++|.|.| ..+.++||+.||+|+...||||||+ +...|..|.+||..|-
T Consensus 54 NpfeVLqIdp-------------------------ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~ 108 (250)
T KOG1150|consen 54 NPFEVLQIDP-------------------------EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLE 108 (250)
T ss_pred ChHHHHhcCC-------------------------CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5899999987 4688999999999999999999997 5668999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
|+.
T Consensus 109 n~~ 111 (250)
T KOG1150|consen 109 NDK 111 (250)
T ss_pred CHH
Confidence 863
No 70
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.04 E-value=0.077 Score=72.63 Aligned_cols=387 Identities=18% Similarity=0.271 Sum_probs=224.4
Q ss_pred hCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHH
Q 000052 2039 SNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLH 2117 (2592)
Q Consensus 2039 ~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~ 2117 (2592)
.++..+..+...+-+..|..+|.. ++..+...++..|..||-..+|-..|++.+ ++..|..++.+ +.+.+..+|.
T Consensus 278 ed~~ve~kM~~~~iV~~Lv~~Ldr---~n~ellil~v~fLkkLSi~~ENK~~m~~~g-iV~kL~kLl~s~~~~l~~~aLr 353 (708)
T PF05804_consen 278 EDPRVELKMVNKGIVSLLVKCLDR---ENEELLILAVTFLKKLSIFKENKDEMAESG-IVEKLLKLLPSENEDLVNVALR 353 (708)
T ss_pred cChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHhcCCCHHHHHHHHH
Confidence 367788888888888889999864 355788889999999999999999999866 78888888875 3567888999
Q ss_pred HHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCc
Q 000052 2118 VLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGP 2197 (2592)
Q Consensus 2118 ~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP 2197 (2592)
+|+.|..++++..+.++.|++..|..+|.+. ..|.-+..+|.-+..|.- .|....=..-+|. +++.+-.+|
T Consensus 354 lL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~------~~~~val~iLy~LS~dd~--~r~~f~~TdcIp~-L~~~Ll~~~ 424 (708)
T PF05804_consen 354 LLFNLSFDPELRSQMVSLGLIPKLVELLKDP------NFREVALKILYNLSMDDE--ARSMFAYTDCIPQ-LMQMLLENS 424 (708)
T ss_pred HHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC------chHHHHHHHHHHhccCHh--hHHHHhhcchHHH-HHHHHHhCC
Confidence 9999999999999999999999999999753 345567788888877632 2222221122222 233333333
Q ss_pred hhhHHHhhcccccCccccc-------CHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeee
Q 000052 2198 GEAVVSALEQTTETPELVW-------TPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYV 2270 (2592)
Q Consensus 2198 ~~a~v~~fds~~EnPELIW-------n~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYl 2270 (2592)
.+.+ .+|||| +..-.+.+++. .-...+.+. ...|+.|--+. .|
T Consensus 425 ~~~v---------~~eliaL~iNLa~~~rnaqlm~~g--~gL~~L~~r-----a~~~~D~lLlK--------------lI 474 (708)
T PF05804_consen 425 EEEV---------QLELIALLINLALNKRNAQLMCEG--NGLQSLMKR-----ALKTRDPLLLK--------------LI 474 (708)
T ss_pred Cccc---------cHHHHHHHHHHhcCHHHHHHHHhc--CcHHHHHHH-----HHhcccHHHHH--------------HH
Confidence 2211 123322 11111111100 000011111 12234332221 12
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHH--HHHHHHHhcCc-hhhhhhccCCChHHHHHH
Q 000052 2271 RLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLS--AALVSLLRVHP-ALADHVGYLGYVPKLVAA 2347 (2592)
Q Consensus 2271 RLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt--~A~v~Ll~~~p-~Lad~v~~lG~~pkl~~~ 2347 (2592)
|.-=.+++ +++. .|. +-+..++..+...+. . +++. -++.+=|.... .-..-+-..+-+|-|...
T Consensus 475 RNiS~h~~-~~k~--~f~-~~i~~L~~~v~~~~~------e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 475 RNISQHDG-PLKE--LFV-DFIGDLAKIVSSGDS------E---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred HHHHhcCc-hHHH--HHH-HHHHHHHHHhhcCCc------H---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHH
Confidence 22222222 1111 121 122223333333211 1 1221 12222222211 222333346777888777
Q ss_pred HhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHH
Q 000052 2348 VAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMK 2427 (2592)
Q Consensus 2348 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~ 2427 (2592)
|... . ..+.+...++.++-.+|....|+.-+++.++ ++.|..
T Consensus 542 L~~g--------------------------------~-~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl-----i~~Li~ 583 (708)
T PF05804_consen 542 LKPG--------------------------------A-SEDDLLLEVVILLGTLASDPECAPLLAKSGL-----IPTLIE 583 (708)
T ss_pred hCCC--------------------------------C-CChHHHHHHHHHHHHHHCCHHHHHHHHhCCh-----HHHHHH
Confidence 7411 0 0124678899999999999999999998776 555555
Q ss_pred Hhccc-C--chH-HHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHH
Q 000052 2428 AIGWQ-G--GSI-LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIE 2503 (2592)
Q Consensus 2428 ~m~~~-~--~~~-la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~ 2503 (2592)
.+... . +++ ..+-++.+++.++ ..++.++++ .+.+.||+.|+... ++.+ |...=.
T Consensus 584 LL~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~---~~~~~ylidL~~d~----------------N~~i-r~~~d~ 642 (708)
T PF05804_consen 584 LLNAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKE---TEIPAYLIDLMHDK----------------NAEI-RKVCDN 642 (708)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhc---cchHHHHHHHhcCC----------------CHHH-HHHHHH
Confidence 55543 2 233 5557888888774 345566664 68999999999532 1223 333444
Q ss_pred HHHHHHh-cCCChHHHHH-----------------HHhcCchhhhhccCCCceec
Q 000052 2504 VLHAFAA-EGAHCSKVRD-----------------ILSASDVWSAYKDQKHDLFL 2540 (2592)
Q Consensus 2504 ~Lkam~~-~~~~G~~V~~-----------------iL~~s~vW~~YkdQ~HDLFi 2540 (2592)
+|-.++. |...|++|+. -.+.+.-|-.|.|+.|+-|+
T Consensus 643 ~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~~~~~~~~~d~~~~~~~ 697 (708)
T PF05804_consen 643 ALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDDNDDYLDYGDDIFEEYF 697 (708)
T ss_pred HHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccccccccccCCCCccccccc
Confidence 5555554 6666666643 22345567778888776554
No 71
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.71 E-value=0.0015 Score=75.11 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=46.3
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AY 1575 (2592)
+.+++||+++. -.+|...|++.||+|.+++|||+... +.+.-..||+||
T Consensus 3 nyF~lf~lp~~-----------------------F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY 59 (173)
T PRK01773 3 NPFALFDLPVD-----------------------FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDAL 59 (173)
T ss_pred ChHHhcCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 46789999852 26899999999999999999999743 334568899999
Q ss_pred HHhhccc
Q 000052 1576 ERLQATM 1582 (2592)
Q Consensus 1576 evLsd~~ 1582 (2592)
.+|+||.
T Consensus 60 ~tLkdPl 66 (173)
T PRK01773 60 QILKDPI 66 (173)
T ss_pred HHHCChH
Confidence 9999974
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0057 Score=64.08 Aligned_cols=59 Identities=25% Similarity=0.404 Sum_probs=50.4
Q ss_pred CCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHH
Q 000052 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYE 1576 (2592)
Q Consensus 1497 ~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYe 1576 (2592)
.+.||..||..||||++ .++.++||.++||.....|||+... .-.-.+|++|++
T Consensus 50 ~~kMsr~EA~lIL~v~~-------------------------s~~k~KikeaHrriM~~NHPD~GGS-PYlAsKINEAKd 103 (112)
T KOG0723|consen 50 EPKMSRREAALILGVTP-------------------------SLDKDKIKEAHRRIMLANHPDRGGS-PYLASKINEAKD 103 (112)
T ss_pred ccccchHHHHHHhCCCc-------------------------cccHHHHHHHHHHHHHcCCCcCCCC-HHHHHHHHHHHH
Confidence 35689999999999995 6789999999999999999999875 444457999999
Q ss_pred Hhhcc
Q 000052 1577 RLQAT 1581 (2592)
Q Consensus 1577 vLsd~ 1581 (2592)
+|...
T Consensus 104 lLe~~ 108 (112)
T KOG0723|consen 104 LLEGT 108 (112)
T ss_pred HHhcc
Confidence 99863
No 73
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=95.99 E-value=0.0053 Score=58.45 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=39.7
Q ss_pred ceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcch-hhchh
Q 000052 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDW-KKLRD 1220 (2592)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W-~~l~~ 1220 (2592)
|+|+|.+.+|+.+|||+..+|+.-+++|-.+.+..|+..+-.+| .++..
T Consensus 1 ~~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~ 50 (57)
T PF02213_consen 1 KMWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGS 50 (57)
T ss_dssp -EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCE
T ss_pred CEeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchh
Confidence 68999999999999999999999999999999999999865554 44433
No 74
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=95.50 E-value=0.017 Score=55.13 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=45.3
Q ss_pred ceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceeccc-Ccchhhchhh
Q 000052 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASG-MLDWKKLRDI 1221 (2592)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~G-M~~W~~l~~i 1221 (2592)
..|+|.+.+|+.+|||+.++|+.-+++|-.+.+-.|+..| ...|.++.++
T Consensus 2 ~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~ 52 (57)
T cd00072 2 VQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDI 52 (57)
T ss_pred cEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHH
Confidence 5799999999999999999999999999999999999994 4569888776
No 75
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.027 Score=65.33 Aligned_cols=55 Identities=25% Similarity=0.522 Sum_probs=48.2
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHH-Hh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYE-RL 1578 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYe-vL 1578 (2592)
.-++|.|||+.. .+|.+++|.+|.+||++||||...+ ..++|.+|.+||. +|
T Consensus 46 ~~e~fril~v~e-------------------------~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvl 100 (342)
T KOG0568|consen 46 IMECFRILGVEE-------------------------GADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVL 100 (342)
T ss_pred HHHHHHHhcccc-------------------------cCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHH
Confidence 568999999983 6788899999999999999999765 6789999999999 77
Q ss_pred hcc
Q 000052 1579 QAT 1581 (2592)
Q Consensus 1579 sd~ 1581 (2592)
+..
T Consensus 101 q~~ 103 (342)
T KOG0568|consen 101 QEK 103 (342)
T ss_pred HHH
Confidence 763
No 76
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=3.2 Score=52.27 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred HhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHHHhhCcc-hHHH
Q 000052 2037 LTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQMLHYAPA-CREG 2114 (2592)
Q Consensus 2037 L~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~lL~~~p~-~~~~ 2114 (2592)
|.-+|.=+..+.-.|-|.+|..+|... ++..+|..|..+|.-|+. +.--+..|-. ...+..+..++...|- .+..
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~--dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqse 395 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAG--DNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSE 395 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcC--CchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHH
Confidence 566888888888888889999998865 456799999999999987 5555666654 4477888888877663 2222
Q ss_pred HHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q 000052 2115 VLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAI 2179 (2592)
Q Consensus 2115 vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~ 2179 (2592)
+--++..|+-++.--...+..|.+..|..+.. +.+.++|--+|+.|.-+.+|--|=.||+.
T Consensus 396 isac~a~Lal~d~~k~~lld~gi~~iLIp~t~----s~s~Ev~gNaAaAL~Nlss~v~~YarviE 456 (550)
T KOG4224|consen 396 ISACIAQLALNDNDKEALLDSGIIPILIPWTG----SESEEVRGNAAAALINLSSDVEHYARVIE 456 (550)
T ss_pred HHHHHHHHHhccccHHHHhhcCCcceeecccC----ccchhhcccHHHHHHhhhhhhHHHHHHHH
Confidence 22222222222222223445554444444433 34678888899999999987666655533
No 77
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=43 Score=45.17 Aligned_cols=139 Identities=13% Similarity=0.170 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHH-HHHcCChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVL-SLLTTCASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL-~~ls~n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
++.+.-|+..|-...+.--..+.-.|-+++|..+|.+. +..++.-||+-+ ..+|.+..=-+.+...+ .+..|..+
T Consensus 254 l~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-~L~~l~~l 329 (514)
T KOG0166|consen 254 LTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQTQVVINSG-ALPVLSNL 329 (514)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHHHHHHHHhcC-hHHHHHHH
Confidence 46667777766655444433455667888899998864 456777788777 45566766666666544 67777777
Q ss_pred HhhCc-chH-HHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCC
Q 000052 2105 LHYAP-ACR-EGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPM 2172 (2592)
Q Consensus 2105 L~~~p-~~~-~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~Dkl 2172 (2592)
+...| +.+ ..+.=++....+ +.+-++..+..|.+..|++++..+ ...+|..||-+++-+++..-
T Consensus 330 l~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~----ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 330 LSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA----EFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred hccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc----chHHHHHHHHHHHhhcccCC
Confidence 77444 322 345556655554 777899999999999999999875 47889999999988877644
No 78
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=91.95 E-value=0.22 Score=47.60 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=44.0
Q ss_pred ceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhh
Q 000052 1172 KEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDI 1221 (2592)
Q Consensus 1172 KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~i 1221 (2592)
..|+|.+.+|+.+|||+..+|+.-+++|-.+.+-.|+..+-....++..+
T Consensus 1 ~~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~ 50 (56)
T smart00444 1 VLWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDL 50 (56)
T ss_pred CEEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhh
Confidence 36999999999999999999999999999999999999887776666544
No 79
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.81 E-value=1.4 Score=46.01 Aligned_cols=110 Identities=25% Similarity=0.283 Sum_probs=82.5
Q ss_pred ccccccccccccCCCCCCChhhHHHHHHHHHcCC-hhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcch-H
Q 000052 2051 EKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP-E 2127 (2592)
Q Consensus 2051 ~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~-~ 2127 (2592)
|-+..+.++|.. ++..+...++..|..++.+ .+|...+... .++..++.+|.. .+..+..++.+|..++.+. +
T Consensus 7 ~~i~~l~~~l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 7 GGLPALVSLLSS---SDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred CChHHHHHHHHc---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 344455566653 2457889999999999987 7777777764 478888888875 3566677889999999766 5
Q ss_pred HHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000052 2128 LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2592)
Q Consensus 2128 LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~ 2168 (2592)
......+.|++.+|++++... ...+|..++.+|..+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSS----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcC----CHHHHHHHHHHHHHhh
Confidence 666778889999999988753 5788889988887664
No 80
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.02 E-value=5.5 Score=49.21 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=113.5
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCccee
Q 000052 1095 AHITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEW 1174 (2592)
Q Consensus 1095 ~y~~~Ll~~t~d~~~R~~Lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeW 1174 (2592)
.-++.+|+.+.|+..+...+..+......+.|=+.+-+.||+.++.+++.--+.. .+..++.|-+.+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~-------vr~~AL~aL~Nls----- 82 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPS-------VREKALNALNNLS----- 82 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChH-------HHHHHHHHHHhcC-----
Confidence 4588999999999999999988888888899999999999999999999432221 2223333322221
Q ss_pred eeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHHhhc
Q 000052 1175 MFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSA 1254 (2592)
Q Consensus 1175 yY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~ 1254 (2592)
.+.+. ...++. -|+++.....++ |.=++.| ...|++|..|+-
T Consensus 83 ----~~~en-----~~~Ik~-------------------------~i~~Vc~~~~s~-~lns~~Q--~agLrlL~nLtv- 124 (254)
T PF04826_consen 83 ----VNDEN-----QEQIKM-------------------------YIPQVCEETVSS-PLNSEVQ--LAGLRLLTNLTV- 124 (254)
T ss_pred ----CChhh-----HHHHHH-------------------------HHHHHHHHHhcC-CCCCHHH--HHHHHHHHccCC-
Confidence 01000 011111 133332222221 2223444 458999999864
Q ss_pred ccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHH-hhhhhcCC
Q 000052 1255 HSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAF-YFALAYPG 1331 (2592)
Q Consensus 1255 ~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf-~f~L~y~g 1331 (2592)
+.+ ...++. .++|+++++|.+++..+=..++.+|..+.. ||.....|..+.+. -|+.++..
T Consensus 125 ----~~~---------~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 125 ----TND---------YHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred ----Ccc---------hhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHcc
Confidence 222 123443 379999999999999999999999999877 99878999999986 34445543
No 81
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.68 E-value=4.5 Score=42.30 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=73.7
Q ss_pred hhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC-hhHHHHHh
Q 000052 2334 HVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS-TTCAEAMA 2412 (2592)
Q Consensus 2334 ~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s-~~Cv~ala 2412 (2592)
.+...|-+|.|++.|...+ ..++..++..|..++.+ ..|...+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-----------------------------------~~~~~~a~~~l~~l~~~~~~~~~~~~ 46 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-----------------------------------ENVQREAAWALSNLSAGNNDNIQAVV 46 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-----------------------------------HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567899999999986432 14678999999999988 78888887
Q ss_pred hcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhc
Q 000052 2413 ATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2413 ~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~ 2475 (2592)
+.++ ++.|.+.+...... .-++-+|..+.... ..-.....+.|+++.|+++|+.
T Consensus 47 ~~~~-----i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 47 EAGG-----LPALVQLLKSEDEEVVKAALWALRNLAAGP----EDNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HCCC-----hHHHHHHHhCCCHHHHHHHHHHHHHHccCc----HHHHHHHHHCCChHHHHHHHhc
Confidence 7555 88899998875332 26778888887532 2345556788999999999963
No 82
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.09 E-value=53 Score=44.38 Aligned_cols=279 Identities=21% Similarity=0.241 Sum_probs=161.9
Q ss_pred hHHHHHHHHhhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCC
Q 000052 2097 SLLLLLQMLHYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMH 2173 (2592)
Q Consensus 2097 vl~~Ll~lL~~~--p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~Dklh 2173 (2592)
++.-+..+|+.. |...-.+--+|-..+| +++-.+..+.+|.|..+..++-. .+..+|++++-.|+.+..|
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagd--- 182 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGD--- 182 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccC---
Confidence 667777777632 4444444445555565 66777788999999998888864 3789999999999999886
Q ss_pred ChHHHHHHHhhCcHHHHHHHhcCc-hhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcc
Q 000052 2174 GPRVAITLARFLPDGLVSVIRDGP-GEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQ 2252 (2592)
Q Consensus 2174 GPrV~~~LsKfLP~~fv~amrdsP-~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~ 2252 (2592)
||.-|-.+-+ .. -...++++..... ..|...+.=++.++|. +.+ .|+.
T Consensus 183 s~~~Rd~vl~------------~g~l~pLl~~l~~~~~-------~~~lRn~tW~LsNlcr--------gk~----P~P~ 231 (514)
T KOG0166|consen 183 SPDCRDYVLS------------CGALDPLLRLLNKSDK-------LSMLRNATWTLSNLCR--------GKN----PSPP 231 (514)
T ss_pred ChHHHHHHHh------------hcchHHHHHHhccccc-------hHHHHHHHHHHHHHHc--------CCC----CCCc
Confidence 4544433322 11 0112222221111 2333333333333332 111 1222
Q ss_pred hhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhh
Q 000052 2253 ASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALA 2332 (2592)
Q Consensus 2253 ~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~La 2332 (2592)
|. =...+|..+..++-.+ |++++.-..-|+..|--.-+..-
T Consensus 232 ~~--------------------------------~v~~iLp~L~~ll~~~-------D~~Vl~Da~WAlsyLsdg~ne~i 272 (514)
T KOG0166|consen 232 FD--------------------------------VVAPILPALLRLLHST-------DEEVLTDACWALSYLTDGSNEKI 272 (514)
T ss_pred HH--------------------------------HHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcCChHHH
Confidence 21 2334666666666654 44555445667776666777788
Q ss_pred hhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHH-HHhhCChhHHHHH
Q 000052 2333 DHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVL-HQLAASTTCAEAM 2411 (2592)
Q Consensus 2333 d~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vl-h~ls~s~~Cv~al 2411 (2592)
+.+--.|-+|+|+.+|.+...+ ..+| |||-+ +.-..|..=.+.+
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~----------------------------v~~P-------aLRaiGNIvtG~d~QTq~v 317 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPK----------------------------VVTP-------ALRAIGNIVTGSDEQTQVV 317 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcc----------------------------cccH-------HHhhccceeeccHHHHHHH
Confidence 8889999999999999875421 1222 34333 2222222222222
Q ss_pred hhcCCCCCcchHHHHHHhc-ccCchH--HHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCccccc
Q 000052 2412 AATSTGTPQVVPILMKAIG-WQGGSI--LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMK 2488 (2592)
Q Consensus 2412 a~~~~~~p~~~~~l~~~m~-~~~~~~--la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~ 2488 (2592)
- +| ..+|-|...+. ++...+ -||=+++-+.. +|. +=+..-+..|++|.|+.+|+...
T Consensus 318 i--~~---~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~---~qiqaVida~l~p~Li~~l~~~e----------- 377 (514)
T KOG0166|consen 318 I--NS---GALPVLSNLLSSSPKESIKKEACWTISNITA-GNQ---EQIQAVIDANLIPVLINLLQTAE----------- 377 (514)
T ss_pred H--hc---ChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCH---HHHHHHHHcccHHHHHHHHhccc-----------
Confidence 2 23 24666666666 344443 68889988876 543 33555667899999999997431
Q ss_pred ccccchhhhHHHHHHHHHHHHhcCC
Q 000052 2489 WNESEASIGRVLAIEVLHAFAAEGA 2513 (2592)
Q Consensus 2489 ~~~~~a~~~ra~~V~~Lkam~~~~~ 2513 (2592)
--+|-.++-|+.-++.++.
T Consensus 378 ------f~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 378 ------FDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred ------hHHHHHHHHHHHhhcccCC
Confidence 1245566667777766665
No 83
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.41 Score=55.52 Aligned_cols=51 Identities=39% Similarity=0.707 Sum_probs=43.3
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC----------chHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP----------EGREKFLAVQ 1572 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp----------~~~ekF~~I~ 1572 (2592)
.++|++||+.. ..+..+|+++||++..++|||+-- ...+++++|+
T Consensus 113 ~~~l~~l~~~~-------------------------~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~ 167 (174)
T COG1076 113 EDALKVLGVEI-------------------------KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQ 167 (174)
T ss_pred hhHHHHhcCch-------------------------hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 78999999985 457789999999999999999853 1678899999
Q ss_pred HHHHHh
Q 000052 1573 KAYERL 1578 (2592)
Q Consensus 1573 ~AYevL 1578 (2592)
+||+.+
T Consensus 168 ~a~~~~ 173 (174)
T COG1076 168 EAYEDI 173 (174)
T ss_pred HHHHhc
Confidence 999753
No 84
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.30 E-value=6.5 Score=53.00 Aligned_cols=139 Identities=24% Similarity=0.328 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHh
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~ 2106 (2592)
.+++.++.++++++.+....+...+-++.+..|+.. ++..|.+.|..+|..++.+..=.+.+.... .+..|..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~ 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMS 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHh
Confidence 567888999999988877777777777778888875 367899999999999998887776665433 4566777776
Q ss_pred h-CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000052 2107 Y-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2592)
Q Consensus 2107 ~-~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhG 2174 (2592)
. ....+--+++++-.+++ +++........|.+..+++.|.+. ..=+|.-+.++|..|.. .-||
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d----DiLvqlnalell~~La~-~~~g 235 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD----DILVQLNALELLSELAE-TPHG 235 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----cHHHHHHHHHHHHHHHc-ChhH
Confidence 5 34455668899888886 456666667778788888877752 56778999999999988 5666
No 85
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=85.29 E-value=1.9 Score=47.88 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=38.6
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevL 1578 (2592)
.|+.+||++||+|+. ..+.++|.+.|.+|-...+|+|.+. ---=.+|..|.|+|
T Consensus 54 ~Mtl~EA~~ILnv~~-------------------------~~~~eeI~k~y~~Lf~~Nd~~kGGS-fYLQSKV~rAKErl 107 (127)
T PF03656_consen 54 GMTLDEARQILNVKE-------------------------ELSREEIQKRYKHLFKANDPSKGGS-FYLQSKVFRAKERL 107 (127)
T ss_dssp ---HHHHHHHHT--G---------------------------SHHHHHHHHHHHHHHT-CCCTS--HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCC-------------------------ccCHHHHHHHHHHHHhccCCCcCCC-HHHHHHHHHHHHHH
Confidence 589999999999984 4688999999999999999998764 22223577788887
Q ss_pred hcc
Q 000052 1579 QAT 1581 (2592)
Q Consensus 1579 sd~ 1581 (2592)
-.+
T Consensus 108 ~~E 110 (127)
T PF03656_consen 108 EQE 110 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 86
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=83.78 E-value=3 Score=48.18 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=69.4
Q ss_pred hhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhH
Q 000052 1662 GEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGA 1741 (2592)
Q Consensus 1662 ~eEL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l 1741 (2592)
.+++...||+..|.+++.++..--... +....+...++|||........+++.+...+..+.-|+.|+.-.. +.+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~----~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~-~~~ 174 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKS----EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN-IKT 174 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTC----TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS-HHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhc----chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC-HHH
Confidence 567777899999999999886544322 445567778999999999999999999999999999999987443 578
Q ss_pred HHHHHHHHHHHh
Q 000052 1742 VDAALQTIAHVS 1753 (2592)
Q Consensus 1742 ~~aALe~v~~~a 1753 (2592)
...|+|++..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999999886
No 87
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=83.39 E-value=5.4 Score=47.39 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCcceEEEEeccceeeee------cCCccceEEeeeccceeEeeecCCCCceEEEEecCCCcceeeccCchhHHHHHH
Q 000052 292 EHGGAVSRQLILTRVSLVER------RPDNYEAVIVRPLSAVSSLVRFAEEPQMFAIEFNDGCPIHVYASTSRDSLLAAV 365 (2592)
Q Consensus 292 ~h~~~v~R~L~LT~~~LvER------dp~tY~vv~~rpL~~i~aLVR~~~dpQ~f~IEf~dG~~~r~Y~s~~RDsLLAsl 365 (2592)
+++-+.+|.|+||+..|-=- ++.+|.+=-.-||++|.++.-+.-.++.|.|--.+.- =-++.+..+--+++.|
T Consensus 61 r~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~-D~il~~~~k~Elv~~L 139 (199)
T PF06017_consen 61 RRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEG-DLILESDFKTELVTIL 139 (199)
T ss_pred CCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCC-CEEEEeCcHHHHHHHH
Confidence 36679999999999955444 6778888888899999999999999999999985432 3567778889999999
Q ss_pred HHHHHhhCCCCeeeec
Q 000052 366 RDVLQTEGHYPVPVLP 381 (2592)
Q Consensus 366 LD~~ra~Gn~~V~V~~ 381 (2592)
.+.++...+++++|.-
T Consensus 140 ~~~~~~~~~~~l~v~~ 155 (199)
T PF06017_consen 140 CKAYKKATGKKLPVNF 155 (199)
T ss_pred HHHHHHHhCCceeEEE
Confidence 9999998887877743
No 88
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=58 Score=41.82 Aligned_cols=308 Identities=17% Similarity=0.206 Sum_probs=174.0
Q ss_pred CCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhCc-chHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhh
Q 000052 2067 DSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAP-ACREGVLHVLYALASTPELAWAAAKHGGVVYILELL 2145 (2592)
Q Consensus 2067 ~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p-~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL 2145 (2592)
...+|..+..++-.|+.-..=-..||..+ .+.++..+-++-- ..+.-++..|..+....+=.++.+..||+.+|+.++
T Consensus 139 ~vevqcnaVgCitnLaT~d~nk~kiA~sG-aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 139 GVEVQCNAVGCITNLATFDSNKVKIARSG-ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred CcEEEeeehhhhhhhhccccchhhhhhcc-chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 44667777766655543333333466544 5566665444321 122347777788887778889999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC---cHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHH
Q 000052 2146 LPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFL---PDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAA 2222 (2592)
Q Consensus 2146 ~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfL---P~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~ 2222 (2592)
..+ .+.+|.-+.-.++-+.-|. +-|.+|.+-= =|.+++-|+|+-..+ +
T Consensus 218 ~s~----d~dvqyycttaisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~kv--k------------------- 268 (550)
T KOG4224|consen 218 KSG----DLDVQYYCTTAISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSDKV--K------------------- 268 (550)
T ss_pred ccC----ChhHHHHHHHHhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCChHH--H-------------------
Confidence 754 5677777877777776553 3344444332 246778888765431 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhcc
Q 000052 2223 SLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAAT 2302 (2592)
Q Consensus 2223 ~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~ 2302 (2592)
+.+..+-+..+.+ .+++-|++=.|- +--+++++..+
T Consensus 269 ----cqA~lALrnlasd-----------------t~Yq~eiv~ag~-----------------------lP~lv~Llqs~ 304 (550)
T KOG4224|consen 269 ----CQAGLALRNLASD-----------------TEYQREIVEAGS-----------------------LPLLVELLQSP 304 (550)
T ss_pred ----HHHHHHHhhhccc-----------------chhhhHHHhcCC-----------------------chHHHHHHhCc
Confidence 1222222222221 122223332221 11234444331
Q ss_pred CCCCCCCCchhhHHHHHHHHHH--HhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCC
Q 000052 2303 HYDTQAIDPELPLLLSAALVSL--LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSA 2380 (2592)
Q Consensus 2303 ~~~~~~~d~~~l~llt~A~v~L--l~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2380 (2592)
+..++.+..-|. +..||.=.--|.-.|.+--|+++|....+
T Consensus 305 ----------~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dn--------------------------- 347 (550)
T KOG4224|consen 305 ----------MGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDN--------------------------- 347 (550)
T ss_pred ----------chhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCc---------------------------
Confidence 112454455555 88999988889999999999999986432
Q ss_pred CCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhcccCch----HHHHHHHHHHhhccccchhH
Q 000052 2381 QPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQGGS----ILALETLKRVVVAGNRARDA 2455 (2592)
Q Consensus 2381 ~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~----~la~e~L~r~~~~~~r~~~~ 2455 (2592)
|.+.-.+...|.-||. |+.-+..+-.... ||.+..-....+-. +.||=+ .++- +|.
T Consensus 348 -------EeiqchAvstLrnLAasse~n~~~i~esgA-----i~kl~eL~lD~pvsvqseisac~a---~Lal----~d~ 408 (550)
T KOG4224|consen 348 -------EEIQCHAVSTLRNLAASSEHNVSVIRESGA-----IPKLIELLLDGPVSVQSEISACIA---QLAL----NDN 408 (550)
T ss_pred -------hhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-----hHHHHHHHhcCChhHHHHHHHHHH---HHHh----ccc
Confidence 2455678889999988 6777777766544 55444433322211 223311 1110 122
Q ss_pred HHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCChHHHHHH
Q 000052 2456 LVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAEGAHCSKVRDI 2521 (2592)
Q Consensus 2456 lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~~~~G~~V~~i 2521 (2592)
.-..-++.|+++.|..+++.-. .-+ |--+..+|-.++.+-.|=.||.+.
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s---~Ev--------------~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSES---EEV--------------RGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred cHHHHhhcCCcceeecccCccc---hhh--------------cccHHHHHHhhhhhhHHHHHHHHH
Confidence 2334467888888777775321 111 111233666677766666666554
No 89
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=81.93 E-value=14 Score=49.99 Aligned_cols=118 Identities=21% Similarity=0.219 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
-..|.++|.++.++.++++..+.+.. +..|-.++.. +++.++..+++++-.++. +.+..+.+.. ..++..++..
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~-~~~L~~l~~~---~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~e 210 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNL-LSKLKSLMSQ---SSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKE 210 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcch-HHHHHHHHhc---cCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHH
Confidence 46789999999999999887666554 5556666654 245678888888887764 4555554444 4478888888
Q ss_pred HhhCcch--HHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCC
Q 000052 2105 LHYAPAC--REGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQ 2149 (2592)
Q Consensus 2105 L~~~p~~--~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~ 2149 (2592)
+.. .|. ...++++|..|+.++...+...+.|.+.-|.+++.+..
T Consensus 211 L~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 211 LDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred hcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 876 453 34599999999998888888888888888889988764
No 90
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=79.21 E-value=1.1e+02 Score=40.99 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhhCccchhhcccc-----ccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHh--hchhHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTK-----EKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVA--DGSSLL 2099 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~-----~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~--~~~vl~ 2099 (2592)
+-+|+=+.-+|+.+|.....+... ....++|.+|. +++.-|+..+..+|..+..... ..+.. ......
T Consensus 72 qyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~~--~~~~~~~l~~~~~ 146 (429)
T cd00256 72 RYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFGL--AKMEGSDLDYYFN 146 (429)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcCc--cccchhHHHHHHH
Confidence 344556677777887755444321 22334555544 2456789999999988764321 11100 011222
Q ss_pred HHHHHHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHH------------------
Q 000052 2100 LLLQMLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA------------------ 2159 (2592)
Q Consensus 2100 ~Ll~lL~~--~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~------------------ 2159 (2592)
.|...+.. ..+....++++|..|...++......+.+|+..|.++|.+.......+....
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 226 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR 226 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc
Confidence 34444432 2455667889999999888888888889999999999876321111111111
Q ss_pred ------HHHHHHHHhcCCCCChHHHH---HHHhhCcH--------HHHHHHhcCchhhHHHhhccccc-CcccccC-HHH
Q 000052 2160 ------AASLLGKLVGQPMHGPRVAI---TLARFLPD--------GLVSVIRDGPGEAVVSALEQTTE-TPELVWT-PAM 2220 (2592)
Q Consensus 2160 ------aA~lL~kM~~DklhGPrV~~---~LsKfLP~--------~fv~amrdsP~~a~v~~fds~~E-nPELIWn-~~m 2220 (2592)
.+++++.....|. ||. +|--++.. .+...|-+..--.+++.+...+- -|||.=+ +..
T Consensus 227 ~~~i~~l~~i~k~s~KEKv----vRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 227 LSLIQDLSDILKESTKEKV----IRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred ccHHHHHHHHHHhhhhHHH----HHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 1222222222211 222 22233331 24444444322233444444432 2232100 012
Q ss_pred HHHHHHHHHHH--HHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHH---HHHHHH
Q 000052 2221 AASLSAQISTM--ASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLE---GLLDQY 2295 (2592)
Q Consensus 2221 R~~v~~~i~~~--~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~---~Ll~~~ 2295 (2592)
.+.+.+.+.++ -.+|.++.. .+...|. |.+-. ++|=--|=.+|.+ +++.+.
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~El~-sg~L~WS-p~H~s----------------------e~FW~EN~~kf~~~~~~llk~L 358 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSELR-SGRLHWS-PVHKS----------------------EKFWRENADRLNEKNYELLKIL 358 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh-cCCccCC-CCCCC----------------------chHHHHHHHHHHhcchHHHHHH
Confidence 22222222222 123333333 3446786 33311 0111112222322 366677
Q ss_pred HHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcC
Q 000052 2296 LSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEG 2352 (2592)
Q Consensus 2296 ~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~ 2352 (2592)
++.+.+++ |+..+....-=+-++.|.+|.=.+.+-.+|-=.++.++|.|++
T Consensus 359 ~~iL~~s~------d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 359 IHLLETSV------DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred HHHHhcCC------CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence 77774432 2223334455566899999999999999999999999999875
No 91
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=74.16 E-value=3 Score=55.25 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc----------hHHHHHHHHHHHHH
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNPE----------GREKFLAVQKAYER 1577 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp~----------~~ekF~~I~~AYev 1577 (2592)
-++.+.+||+|||-++.-||||-++ +.+-|-.+++||..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999874 34445555555543
No 92
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=72.73 E-value=21 Score=44.20 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHh
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~ 2106 (2592)
+.++.||.|+=.+..+.. .-..++..+.+-.... ..++.+|..+|++|..+|.....-.-++. .+..++.+|.
T Consensus 72 ~~AL~aL~Nls~~~en~~---~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~ 144 (254)
T PF04826_consen 72 EKALNALNNLSVNDENQE---QIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLS 144 (254)
T ss_pred HHHHHHHHhcCCChhhHH---HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHH
Confidence 345666666533322221 1123444455433222 24678999999999999977776665654 4566677776
Q ss_pred hC-cchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCC
Q 000052 2107 YA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPS 2148 (2592)
Q Consensus 2107 ~~-p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~ 2148 (2592)
.. .....-+|.+|..|+.++.++++.+.++++.-++.+|...
T Consensus 145 ~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 145 SGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS 187 (254)
T ss_pred cCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC
Confidence 53 2334469999999999999999999999999999999865
No 93
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=72.68 E-value=34 Score=44.82 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhhhc-HHHHHHhCCchHHHHHHHhh-hhccCCCccccccchhhcccccCCcceeeeecCCCcccccccH
Q 000052 1112 RLLLLLKVLMKVLAN-IEACVLVGGCVLAVDLLTVV-HETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEK 1189 (2592)
Q Consensus 1112 ~Lll~~~~L~~~~~N-~~~~v~~~G~~llvdLltla-h~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~ 1189 (2592)
+.+.+++.++....+ ...|.+.+|+.+++|.+..= +...+. ....|+
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----------------~~~~~~-------------- 51 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----------------NKNEEA-------------- 51 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----------------ccccCC--------------
Confidence 467788888866655 77899999999999998521 111110 000000
Q ss_pred HHHHHHhhcCCcCcCCceecccCc-chhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHHhhcccCCCCCCCccccC
Q 000052 1190 DAIRRFWSKKAIDWTTRCWASGML-DWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPT 1268 (2592)
Q Consensus 1190 ~eLk~l~~~g~I~~~T~vWa~GM~-~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~ 1268 (2592)
.+.+.+++ ..+.++ .|-+..+..-|||+| +.++.++.+.+.. +..+
T Consensus 52 --------~~~~~~~~--~~~~~~~~~i~~~r~~llK~lL-----------------k~l~~~~~~~~~~---~~~l--- 98 (379)
T PF06025_consen 52 --------GSGIPPEY--KESSVDGYSISYQRQQLLKSLL-----------------KFLSHAMQHSGGF---GDRL--- 98 (379)
T ss_pred --------CCCCCCCc--ccccccccccCHHHHHHHHHHH-----------------HHHHHHhccCCCc---cccc---
Confidence 00111111 112222 456666666777754 5555555521111 1122
Q ss_pred cchhhhccC----CCchHHHHHhhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhh-cCCCChhhHHHHhhh
Q 000052 1269 PRVKWILSS----SRCLPHIAQAMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALA-YPGSNLYSIAQLFSV 1343 (2592)
Q Consensus 1269 Prvkr~Ls~----~~~LphlvQlLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L~-y~gsn~l~ia~lL~~ 1343 (2592)
|-|-+ +.+|-+|.+---.|-|.++--+++++..++.+-|...+-|...|+...+|- ++...++|..+.|..
T Consensus 99 ----rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 99 ----RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ----ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 33444 567888888888999999999999999999988999999999999998884 453666777766655
No 94
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=71.89 E-value=14 Score=41.09 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=56.4
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCC-CccccccCCCCChHH
Q 000052 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR-KSKAFQAAPGTTNSA 213 (2592)
Q Consensus 135 k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~-~~r~~l~~~~~~~~~ 213 (2592)
++.|.++.|.|++.||..+||.++.+++.++-+.|. +. .+ |+. . -.|+..--.|. .-.-|+|.|+..-.+
T Consensus 36 ~~~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Is---f~--~~--gk~-~-r~FafI~~~~~~~~~CHVF~c~~~a~~ 106 (123)
T cd01216 36 WEDWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLS---FW--GV--GRD-V-RDFAFIMRTERRRFMCHVFRCEPNAGA 106 (123)
T ss_pred cccCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEE---EE--Ec--CCC-C-cEEEEEEEcCCCeEEEEEEEcCCCHHH
Confidence 688999999999999999999999999999988885 44 22 111 1 45543322332 223788999877777
Q ss_pred HHHHHHHH
Q 000052 214 IVSSLTKT 221 (2592)
Q Consensus 214 ii~~i~~~ 221 (2592)
|.+.+.+.
T Consensus 107 i~~tv~~a 114 (123)
T cd01216 107 LATTVEAA 114 (123)
T ss_pred HHHHHHHH
Confidence 88877654
No 95
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.82 E-value=1e+02 Score=39.61 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2109 PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2109 p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
|+......-+|.+|+-+.++-+...+.||+--|+.++.++++......--.+.++|.++..+
T Consensus 256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~ 317 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS 317 (461)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC
Confidence 55566677788888889999999999999999999998765433332334567888888764
No 96
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=71.77 E-value=7.4 Score=46.25 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=67.8
Q ss_pred ccEEEEEEEeeccccc-ccEEEEEecCeeeee------CCCCcccccccccccccccccccccCCCCCCcEEEEEeecCC
Q 000052 20 EYLARYLVVKHSWRGR-YKRILCISNATIITL------DPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGR 92 (2592)
Q Consensus 20 ~~~a~y~vtKhSWrGk-YkRif~Ig~~~i~T~------nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k 92 (2592)
-.-|+. |+|-.=++| =+|+|.|++.+|.-+ ++.+..+--+=++ ++|.+|+.+ +.+-+-|+|+++.
T Consensus 50 vlFs~~-v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l-~~I~~IsvS---~~~D~~~vihv~~--- 121 (199)
T PF06017_consen 50 VLFSDR-VQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPL-SDITGISVS---PLSDNFFVIHVPG--- 121 (199)
T ss_pred eEEEEE-EEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCc-ccccEEEEc---cCCCCEEEEEECC---
Confidence 333444 889554554 579999999999999 7888999999999 799998874 3344568999944
Q ss_pred CcccceeeehhhhhHHHHHHHHhh
Q 000052 93 GKFKAFKFSSRFRASILTELHRIR 116 (2592)
Q Consensus 93 ~K~~~mkFSs~~Ra~lLT~l~r~r 116 (2592)
+ ..+-|+|.++.|++|-|....
T Consensus 122 -~-~D~il~~~~k~Elv~~L~~~~ 143 (199)
T PF06017_consen 122 -E-GDLILESDFKTELVTILCKAY 143 (199)
T ss_pred -C-CCEEEEeCcHHHHHHHHHHHH
Confidence 3 347799999999999998754
No 97
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.56 E-value=27 Score=44.79 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=86.9
Q ss_pred hhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhCc-ch-HHHHHHHHHHh
Q 000052 2045 SIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAP-AC-REGVLHVLYAL 2122 (2592)
Q Consensus 2045 ~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p-~~-~~~vL~~L~aL 2122 (2592)
.-+.++|.+.++..++.. +++.++..|..||...++|.+=++.-+.+...+..|+..+.+.. .- +..+|-.+++|
T Consensus 118 ndl~~~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL 194 (342)
T KOG2160|consen 118 NDLISLGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL 194 (342)
T ss_pred HhHhhccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 345567777777776664 56789999999999998888777766655668888888887533 22 23466555555
Q ss_pred hc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000052 2123 AS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2592)
Q Consensus 2123 ~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~ 2169 (2592)
.. +.....+.++-+|+.-|-+++.. +......+..++.++..+..
T Consensus 195 IRn~~~g~~~fl~~~G~~~L~~vl~~--~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 195 IRNNKPGQDEFLKLNGYQVLRDVLQS--NNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HhcCcHHHHHHHhcCCHHHHHHHHHc--CCcchHHHHHHHHHHHHHHH
Confidence 54 56778899999999999999976 33456677777777777654
No 98
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=69.35 E-value=63 Score=37.68 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=92.1
Q ss_pred HHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCcceeeeecCCCcccccccHHHHHHHhhcCCcCcCCc
Q 000052 1127 IEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTR 1206 (2592)
Q Consensus 1127 ~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~ 1206 (2592)
+.+|+..||+.+|++++--... ..|++ |+-. -++...+.+|...|.+.|+++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~-----------------------~~~~~----~~~L-a~~L~af~eLMeHg~vsWd~l 55 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE-----------------------IQPCK----GEIL-AYALTAFVELMEHGIVSWDTL 55 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc-----------------------cCcch----HHHH-HHHHHHHHHHHhcCcCchhhc
Confidence 4689999999999998811110 00111 0001 134556667777777666552
Q ss_pred eecccCcchhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHHhhcccCCCCCCCccccCcchhhhccCCCchHHHHH
Q 000052 1207 CWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQ 1286 (2592)
Q Consensus 1207 vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQ 1286 (2592)
= .+=++-....-........+...+|.||.+|+...|. ....+.+.-.++-|+.
T Consensus 56 ~-------------~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~-------------ly~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 56 S-------------DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPK-------------LYQLVEQEVTLESLIR 109 (160)
T ss_pred c-------------HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHH-------------HHHHHhccCCHHHHHH
Confidence 1 1111222211111112567778999999998885432 2345566677788888
Q ss_pred hhhcCCchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhhcCCCChhhHHHHhhhhhhhhcc
Q 000052 1287 AMLSGEPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAF 1350 (2592)
Q Consensus 1287 lLLt~~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L~y~gsn~l~ia~lL~~~H~~Qa~ 1350 (2592)
.|-..++.+=.++..|+..+...-++.-. ..|++.|...|.+|..
T Consensus 110 hLq~~~~~iq~naiaLinAL~~kA~~~~r-------------------~~i~~~l~~k~~R~~I 154 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALFLKADDSKR-------------------KEIAETLSQKQIRQVI 154 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCChHHH-------------------HHHHHHHHHHHHHHHH
Confidence 88889999999999999998876655222 2567777776666654
No 99
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.32 E-value=41 Score=42.81 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=95.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHHHHHhhhhccCCCccccccchhhcccccCCcceee
Q 000052 1096 HITVLLDRTDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVDLLTVVHETSERTAIPLQSNLLAATAFMEPFKEWM 1175 (2592)
Q Consensus 1096 y~~~Ll~~t~d~~~R~~Lll~~~~L~~~~~N~~~~v~~~G~~llvdLltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWy 1175 (2592)
-++..|.--.||-.-..+...+.+|--...=.+.+.+.||+..|+.++.-+-++-.
T Consensus 245 ~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~------------------------ 300 (461)
T KOG4199|consen 245 ALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN------------------------ 300 (461)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH------------------------
Confidence 34455555566655555666666665555567888999999999999833221111
Q ss_pred eecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhhHHHHHHHhccCCcCChhhHHHHHHHHHHHHhhcc
Q 000052 1176 FIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIRELRWALAVRVPVLTPTQVGEAALAILHNMVSAH 1255 (2592)
Q Consensus 1176 Y~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~ 1255 (2592)
+ .++..||+.|..+.-.
T Consensus 301 -----------------r---------------------------------------------~l~k~~lslLralAG~- 317 (461)
T KOG4199|consen 301 -----------------R---------------------------------------------TLAKTCLSLLRALAGS- 317 (461)
T ss_pred -----------------H---------------------------------------------HHHHHHHHHHHHHhCC-
Confidence 1 3455688888887651
Q ss_pred cCCCCCCCccccCcchhhhccCCCchHHHHHhhhcC--CchHHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhh
Q 000052 1256 SDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSG--EPSIVEAAAALLKAVVTRNPKAMIRLYSTGAFYFAL 1327 (2592)
Q Consensus 1256 p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~--~p~lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L 1327 (2592)
| .||..+-+-+-++.|+|+++++ +|-+++.++-.+..|.-+.|+--.+.+.+|+--.++
T Consensus 318 ---D----------svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~av 378 (461)
T KOG4199|consen 318 ---D----------SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAV 378 (461)
T ss_pred ---C----------chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHH
Confidence 2 3678888899999999999986 677999999999999999999677778888766655
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=67.85 E-value=56 Score=39.07 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhcHH---HHHHhhc-cchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhh
Q 000052 498 TVMGFVACLRRLLTSRT---AASHVMS-FPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATM 573 (2592)
Q Consensus 498 ~~~~~~~aLrRL~as~~---gf~~~~~-~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~ 573 (2592)
+-+..+..||+++.... ....|.. +...+..|.+.+....-.|+..|+.++..|...... ..+.
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~--------~~~~---- 90 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS--------HFEP---- 90 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG--------GGHH----
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH--------hHHH----
Confidence 34456888888888771 1122211 112223577788888888999999999988752111 1111
Q ss_pred hccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCChhhH
Q 000052 574 MHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAESV 653 (2592)
Q Consensus 574 ~~nKs~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf~Lf~hp~~~i 653 (2592)
.-..++..|++++.+. ...+..+.-+.+..++.. . .+. ..+ ....+...+.|.+..+
T Consensus 91 --------~~~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~--~---~~~--~~~------~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 91 --------YADILLPPLLKKLGDS--KKFIREAANNALDAIIES--C---SYS--PKI------LLEILSQGLKSKNPQV 147 (228)
T ss_dssp --------HHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTT--S----H----HH------HHHHHHHHTT-S-HHH
T ss_pred --------HHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHH--C---CcH--HHH------HHHHHHHHHhCCCHHH
Confidence 1234567777777763 356677777777766632 1 100 011 1344567789999999
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCChhHHhhhhhcCchhHhhh
Q 000052 654 RETVAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLHAFFLPAGERREVSRQLVALWADSYQPALDLLSRVLPPGLVAY 733 (2592)
Q Consensus 654 ~~~aglimrai~Ee~~~~a~~mq~~AL~eGallrHL~~Alf~~~~~~r~lsr~LV~lW~~~~~~a~~LL~RilP~GLl~y 733 (2592)
+..+...+..+++.-..-...++.-.. =..+..-+...+-++..+-|+-+|.++..+....+..-+-+-..+||..=.+
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~-~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~ 226 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAF-LKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKY 226 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHH-HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------------
T ss_pred HHHHHHHHHHHHHHccchHhhhcccch-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhccccc
Confidence 999999999998883311111211110 0335555666666677778999999988886666555554446666655444
Q ss_pred c
Q 000052 734 L 734 (2592)
Q Consensus 734 L 734 (2592)
|
T Consensus 227 l 227 (228)
T PF12348_consen 227 L 227 (228)
T ss_dssp -
T ss_pred C
Confidence 4
No 101
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=67.75 E-value=17 Score=39.09 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000052 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2592)
Q Consensus 135 k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2592)
+.+|.++.|.|++.||..+|+.+++++..|+.++|. +...-+. ++.=|++..-..+ ...-|+|.|...-+
T Consensus 38 ~~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is---~~~~~~~-----~~~~F~~i~~~~~~~~~~CHvF~c~~~a~ 109 (123)
T cd00934 38 GEKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRIS---FCAADPD-----DLRIFAFIAREPGSSRFECHVFKCEKVAE 109 (123)
T ss_pred ccCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEE---EEECCCC-----CCcEEEEEEEcCCCCcEEEEEEEeCchHH
Confidence 356679999999999999999999999999988886 4322221 2455554322222 33478888853325
Q ss_pred HHHHHHHH
Q 000052 213 AIVSSLTK 220 (2592)
Q Consensus 213 ~ii~~i~~ 220 (2592)
+|.+.|.+
T Consensus 110 ~i~~~l~~ 117 (123)
T cd00934 110 PIALTLGQ 117 (123)
T ss_pred HHHHHHHH
Confidence 56666644
No 102
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=67.40 E-value=18 Score=39.73 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=52.6
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCC--CccccccCCCCChH
Q 000052 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGR--KSKAFQAAPGTTNS 212 (2592)
Q Consensus 135 k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~--~~r~~l~~~~~~~~ 212 (2592)
+..|.++.|.|++.||-.+|..+++++..|+.++|. +...-+. ++.-|++.--.++ ...-|+|.++..-+
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Is---f~~~~~~-----~~~~F~fI~~~~~~~~~~CHvF~c~~~a~ 111 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRIS---FCAVGPD-----DLDVFGYIARDPGSSRFACHVFRCEKAAE 111 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCCeEEEEccccceE---EEecCCC-----CCcEEEEEeeCCCCCeEEEEEEEcCchHH
Confidence 566789999999999999999999999999999995 3322111 2455554322322 35588898853333
Q ss_pred HHHHHHHH
Q 000052 213 AIVSSLTK 220 (2592)
Q Consensus 213 ~ii~~i~~ 220 (2592)
+|...|.+
T Consensus 112 ~i~~~i~~ 119 (134)
T smart00462 112 DIALAIGQ 119 (134)
T ss_pred HHHHHHHH
Confidence 45555544
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=66.02 E-value=5.9 Score=35.10 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.4
Q ss_pred cchhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000052 1269 PRVKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2592)
Q Consensus 1269 Prvkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2592)
|..|+.+.+...+|+|+++|-+.++.+.+.++..|..|.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999998874
No 104
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=65.74 E-value=20 Score=38.83 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=53.0
Q ss_pred ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHHH
Q 000052 140 PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAIV 215 (2592)
Q Consensus 140 p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ii 215 (2592)
++.|+||+..|...|+.++.++...+|+.+...|- | .+-|.+. -|+.+. +|.|.+ .+-++|.
T Consensus 22 ~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~----d-------~~~FsFE--AGRrC~tGeG~f~F~t-~~~~~if 87 (104)
T cd01203 22 SYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGR----D-------KGKFSFE--AGRRCTSGEGVFTFDT-TQGNEIF 87 (104)
T ss_pred eEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcc----c-------CCEEEEE--ecCcCCCCCcEEEEec-CCHHHHH
Confidence 78999999999999999999999999999986443 3 3566553 554443 788888 4777888
Q ss_pred HHHHHH
Q 000052 216 SSLTKT 221 (2592)
Q Consensus 216 ~~i~~~ 221 (2592)
+.+.+.
T Consensus 88 ~~v~~~ 93 (104)
T cd01203 88 RAVEAA 93 (104)
T ss_pred HHHHHH
Confidence 877554
No 105
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.82 E-value=27 Score=45.71 Aligned_cols=127 Identities=21% Similarity=0.335 Sum_probs=86.4
Q ss_pred HHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC------C----hhHHHHHHhhchhHHHHHHH
Q 000052 2035 NILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT------C----ASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2035 nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~------n----~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
+++...|.|.-.+.-...+.-|.++|++. +..|....++++..||. + ..-++++.. +.++.+|.+.
T Consensus 109 hvlAt~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd-g~vlaLLvqn 184 (536)
T KOG2734|consen 109 HVLATMPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD-GQVLALLVQN 184 (536)
T ss_pred HhhhcChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh-ccHHHHHHHH
Confidence 45666888775555555666788888875 57899999999999992 2 346667765 5688999999
Q ss_pred HhhCcch-------HHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCC-CCCCcHHHHHHHHHHHHHHh
Q 000052 2105 LHYAPAC-------REGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPS-QQETPLQQRAAAASLLGKLV 2168 (2592)
Q Consensus 2105 L~~~p~~-------~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~-~e~~~~~~R~~aA~lL~kM~ 2168 (2592)
+.+.-+. +.-+|.++-.+.. .+++..++.++|.+..||.-+|.. ..+.+ +.-+.++|+=+.
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN---k~YasEiLaill 254 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN---KQYASEILAILL 254 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh---HHHHHHHHHHHh
Confidence 9865432 2235666666665 678999999999999999955542 33333 344455554433
No 106
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=63.01 E-value=29 Score=38.18 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccC
Q 000052 103 RFRASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYG 182 (2592)
Q Consensus 103 ~~Ra~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~ 182 (2592)
..|.++.-++++-.... ..-........+.+|.+|.|.|++.||-.+|+.+|.++..++.++|. +...-|.
T Consensus 20 ~~g~~~v~~ai~~~~~~----~~~~~~~~~~~~~~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is---~~~~~d~-- 90 (140)
T PF00640_consen 20 SRGSDVVREAIQRLKAE----KIAKSKKSKSNKKKPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRIS---FCAVGDP-- 90 (140)
T ss_dssp HHHHHHHHHHHHHHHHH----CCCSHHHHHTTTSTSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEE---EEEESST--
T ss_pred chhHHHHHHHHHHHHhh----hhhhhhccccccccCeEEEEEEcCCeEEEecCccccccccCCccceE---EEEecCC--
Confidence 35778777766543111 00001111234677889999999999999999999999999999996 4443121
Q ss_pred CCCCCCcEEEeeccCCCc--cccccCCCCChHHHHHHHHH
Q 000052 183 KRSETGGFVLCPLYGRKS--KAFQAAPGTTNSAIVSSLTK 220 (2592)
Q Consensus 183 ~~~~~~gfvl~~~~g~~~--r~~l~~~~~~~~~ii~~i~~ 220 (2592)
.++.-|+.....++.+ .-|+|.+...-++|.+.|.+
T Consensus 91 --~~~~~Fafi~~~~~~~~~~CHVF~~~~~A~~i~~~i~~ 128 (140)
T PF00640_consen 91 --DDKRVFAFIARDPRSSRFYCHVFKCEDQAQEICQAIGQ 128 (140)
T ss_dssp --TETTEEEEEEEETSSSCEEEEEEEESSCHHHHHHHHHH
T ss_pred --CcceEEEEEeccCCCCccccEeeeHhhHHHHHHHHHHH
Confidence 1244454421233333 36888886545677777654
No 107
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.36 E-value=32 Score=43.57 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhCccchhhcccccccccccccccc----CCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSV----PFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLL 2102 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~----~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll 2102 (2592)
.+++++|.++++ .+.....+-..+.+..|+..|.. ......+++=.++-++=.+|.+.++++.|.... +++.|.
T Consensus 168 ~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~ 245 (312)
T PF03224_consen 168 YIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLA 245 (312)
T ss_dssp HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHH
Confidence 678899999984 55666666667777778887721 112223344557778889999999999999877 888888
Q ss_pred HHHhhCc--chHHHHHHHHHHhhcchH--HHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHH
Q 000052 2103 QMLHYAP--ACREGVLHVLYALASTPE--LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASL 2163 (2592)
Q Consensus 2103 ~lL~~~p--~~~~~vL~~L~aL~S~~~--LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~l 2163 (2592)
..++..+ -....++-+|..|++.+. ++...+.+|+. -+|+.|..+ ....+...+....+
T Consensus 246 ~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l-~~l~~L~~r-k~~Dedl~edl~~L 308 (312)
T PF03224_consen 246 DILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL-KTLQNLSER-KWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH-HHHHHHHSS---SSHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH-HHHHHHhcC-CCCCHHHHHHHHHH
Confidence 8887643 345568899999998776 88888888755 455666554 34556665555433
No 108
>PF13446 RPT: A repeated domain in UCH-protein
Probab=56.72 E-value=18 Score=35.26 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHh
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERL 1578 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevL 1578 (2592)
.|+.++||++||+++ +.+++.|-.+|+.... .+| .......+|..++
T Consensus 1 ~~~~~~Ay~~Lgi~~-------------------------~~~Dd~Ii~~f~~~~~-----~~P---~~~~~~r~AL~~I 47 (62)
T PF13446_consen 1 YMDVEEAYEILGIDE-------------------------DTDDDFIISAFQSKVN-----DDP---SQKDTLREALRVI 47 (62)
T ss_pred CCCHHHHHHHhCcCC-------------------------CCCHHHHHHHHHHHHH-----cCh---HhHHHHHHHHHHH
Confidence 378899999999973 6788999999997665 233 2444556677777
Q ss_pred hc
Q 000052 1579 QA 1580 (2592)
Q Consensus 1579 sd 1580 (2592)
.+
T Consensus 48 a~ 49 (62)
T PF13446_consen 48 AE 49 (62)
T ss_pred HH
Confidence 65
No 109
>PF05536 Neurochondrin: Neurochondrin
Probab=54.64 E-value=95 Score=42.69 Aligned_cols=93 Identities=27% Similarity=0.307 Sum_probs=71.0
Q ss_pred ChhhHHHHHHHHHcCChhHHHHHHhhc---hhHHHHHHHHhhCc--chHHHHHHHHHHhhcchHHHHHHHHcCChhhhHH
Q 000052 2069 NIPQLCLNVLSLLTTCASCLEAMVADG---SSLLLLLQMLHYAP--ACREGVLHVLYALASTPELAWAAAKHGGVVYILE 2143 (2592)
Q Consensus 2069 ~vq~~aL~VL~~ls~n~~CVeaIA~~~---~vl~~Ll~lL~~~p--~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~ 2143 (2592)
....+++.||+.++. .+.++... ..++.|+.++.... +....++++|++++++++-.+..++.|++..|.+
T Consensus 72 ~~~~LavsvL~~f~~----~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR----DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHcC----ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 457899999999997 45566544 24566777776544 3456799999999999999999999999999999
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2144 LLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2144 lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
++-+ .+...+.+..+|-.+++.
T Consensus 148 i~~~-----~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 148 IIPN-----QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHh-----CcchHHHHHHHHHHHHHh
Confidence 8876 345566777777776664
No 110
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=50.58 E-value=49 Score=35.41 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=54.0
Q ss_pred cCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCC
Q 000052 134 RNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGT 209 (2592)
Q Consensus 134 ~k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~ 209 (2592)
+.+---++.|+||+..|...|+.++.+++..+|+.|...|- | .+-|.+. -|+.+- +|.|.+.
T Consensus 17 ~~~l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~----~-------~~~F~fE--aGRrc~tG~G~f~f~t~- 82 (100)
T PF02174_consen 17 RCGLSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGR----D-------DGIFSFE--AGRRCPTGEGLFWFQTP- 82 (100)
T ss_dssp CSSSEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEE----E-------TTEEEEE--ESTTSTTCSEEEEEEES-
T ss_pred CCCceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhcc----C-------CCEEEEE--ECCcCCCCCcEEEEEeC-
Confidence 34444489999999999999999999999999999986443 2 3566664 554333 6777773
Q ss_pred ChHHHHHHHHHHH
Q 000052 210 TNSAIVSSLTKTA 222 (2592)
Q Consensus 210 ~~~~ii~~i~~~A 222 (2592)
+-++|.+.|.+..
T Consensus 83 ~a~~I~~~v~~~i 95 (100)
T PF02174_consen 83 DAEEIFETVERAI 95 (100)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6667777665543
No 111
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=50.36 E-value=17 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=33.0
Q ss_pred hhhhccCCCchHHHHHhhhcCCchHHHHHHHHHHHHH
Q 000052 1271 VKWILSSSRCLPHIAQAMLSGEPSIVEAAAALLKAVV 1307 (2592)
Q Consensus 1271 vkr~Ls~~~~LphlvQlLLt~~p~lve~~~~LL~~l~ 1307 (2592)
.|+.+.+..++|+|+++|-+.++.+++.++..|..|.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888899999999999999999999999998874
No 112
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=47.63 E-value=20 Score=37.81 Aligned_cols=77 Identities=14% Similarity=0.359 Sum_probs=0.0
Q ss_pred cccccEEEEEecCeeee---------eCCC-CcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeeh
Q 000052 33 RGRYKRILCISNATIIT---------LDPN-TLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2592)
Q Consensus 33 rGkYkRif~Ig~~~i~T---------~nP~-tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs 102 (2592)
++|++|++|++...=-. .|++ ++.+.-+|+. .|+-.|.-. .+.....+|.|++.| ...=..=|+
T Consensus 1 k~kK~r~Lclsv~~~~~~~v~l~k~K~~~~g~f~i~ktW~L-~eL~~I~~~-~~~~~~~~F~l~~~k----~y~W~a~s~ 74 (91)
T PF15277_consen 1 KKKKPRYLCLSVTNSPRIQVRLHKVKQNDNGSFQIGKTWDL-DELKAIDGI-NPDKDTPEFDLTFDK----PYYWEASSA 74 (91)
T ss_dssp GGEEEEEEEEEEETTETTEEEEEEEEE-CCS-EEEEEEEEG-GG--EEEE--SSS--TTEEEEESSS----EEEEEESSH
T ss_pred CCcccEEEEEEEecCCceEEEEEEEEecCCCcEEEeeEEeh-hhceeeeee-cCCCCCcCEEEEECC----CcEEEeCCH
Q ss_pred hhhhHHHHHHHHh
Q 000052 103 RFRASILTELHRI 115 (2592)
Q Consensus 103 ~~Ra~lLT~l~r~ 115 (2592)
+.|...++.|.+.
T Consensus 75 ~Ek~~Fi~~L~k~ 87 (91)
T PF15277_consen 75 KEKNTFIRSLWKL 87 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 113
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=46.64 E-value=37 Score=38.18 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=56.4
Q ss_pred cCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCC--cEEEeeccCCCccccccCCC-C
Q 000052 134 RNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETG--GFVLCPLYGRKSKAFQAAPG-T 209 (2592)
Q Consensus 134 ~k~~w~-p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~--gfvl~~~~g~~~r~~l~~~~-~ 209 (2592)
.+.-|. .+.|+|++.||..+|..++..+=+|+...|...+..+ + ...+++ |||.---..+..-+|+|.|. .
T Consensus 34 ~~~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~--~---~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev 108 (131)
T PF08416_consen 34 KGRIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADP--D---SRRYNSILGFVVRKPGSSKPNVHLFQCEEV 108 (131)
T ss_dssp SS-SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEET--T---TTEECBEEEEEEEETTCCCEEEEEEEETCT
T ss_pred CCCcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccC--C---CCccceEEEEEEecCCCCCCcEEEEEcCCC
Confidence 467788 7889999999999999999989999999997544432 1 111234 33332112233448999863 4
Q ss_pred ChHHHHHHHHHHHhhh
Q 000052 210 TNSAIVSSLTKTAKSM 225 (2592)
Q Consensus 210 ~~~~ii~~i~~~A~~~ 225 (2592)
..+.+...|+.+..++
T Consensus 109 ~a~~~~~~I~~~v~~~ 124 (131)
T PF08416_consen 109 DAEQPAEDIVSAVSKV 124 (131)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5556777777765553
No 114
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=46.34 E-value=23 Score=40.66 Aligned_cols=44 Identities=34% Similarity=0.659 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCC-------c-hHHHHHHHHHHHHHhhccc
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNP-------E-GREKFLAVQKAYERLQATM 1582 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp-------~-~~ekF~~I~~AYevLsd~~ 1582 (2592)
..+...++.-|.--..+.|||+.. + +.+....+++||..|.||.
T Consensus 21 ~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL 72 (168)
T KOG3192|consen 21 KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPL 72 (168)
T ss_pred CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHH
Confidence 345566776788888899999842 1 6788999999999999975
No 115
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.61 E-value=1.4e+03 Score=34.27 Aligned_cols=370 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHc----------------
Q 000052 2019 DSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT---------------- 2082 (2592)
Q Consensus 2019 d~e~l~~l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls---------------- 2082 (2592)
|.++ ...|.+++.++....| -++.|+..+... .+++++++|.-.++++.
T Consensus 17 Dn~v---r~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~--~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik 81 (1075)
T KOG2171|consen 17 DNEV---RRQAEEALETLAKTEP----------LLPALAHILATS--ADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK 81 (1075)
T ss_pred CchH---HHHHHHHHHHhhcccc----------hHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q ss_pred -----------------CChhHHHHHHhhc------hhHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCCh
Q 000052 2083 -----------------TCASCLEAMVADG------SSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGV 2138 (2592)
Q Consensus 2083 -----------------~n~~CVeaIA~~~------~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqal~~Ggv 2138 (2592)
....-+..||... .++..|+++.++ +|+.++.++.+|+++... -|..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~---------~~~~ 152 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPET---------FGNT 152 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhh---------hccc
Q ss_pred hh-----hHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcc
Q 000052 2139 VY-----ILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPE 2213 (2592)
Q Consensus 2139 lY-----LL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPE 2213 (2592)
.- ++.+|...-.+.+..+|..++..++.+....-+-+.......-+||..+.-.=...+..
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-------------- 218 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-------------- 218 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc--------------
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHH
Q 000052 2214 LVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLD 2293 (2592)
Q Consensus 2214 LIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~ 2293 (2592)
|++....+-+.+.+++.-.-+-. +.+++.++.
T Consensus 219 ---d~~~a~~~l~~l~El~e~~pk~l---------------------------------------------~~~l~~ii~ 250 (1075)
T KOG2171|consen 219 ---DDDAAKSALEALIELLESEPKLL---------------------------------------------RPHLSQIIQ 250 (1075)
T ss_pred ---chHHHHHHHHHHHHHHhhchHHH---------------------------------------------HHHHHHHHH
Q ss_pred HHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccc
Q 000052 2294 QYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTY 2373 (2592)
Q Consensus 2294 ~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 2373 (2592)
-.++.+.. ..+|...-.+.-.=+|++...-|.+....+. |+++|+..+-.. |...+-..+-...|...
T Consensus 251 ~~l~Ia~n-----~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~--~~~~lv~~~l~~-----mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 251 FSLEIAKN-----KELENSIRHLALEFLVSLSEYAPAMCKKLAL--LGHTLVPVLLAM-----MTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHhhc-----ccccHHHHHHHHHHHHHHHHhhHHHhhhchh--hhccHHHHHHHh-----cCCcccchhhccccccc
Q ss_pred cCCCCCC-----------------------------CCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHH
Q 000052 2374 ESDDGSA-----------------------------QPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPI 2424 (2592)
Q Consensus 2374 ~~~~~~~-----------------------------~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~ 2424 (2592)
..+..+. .+.+.+.-.-|+++|+.|-+++.+ |-+.|.. .-|.+++.
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG--c~~~m~~---~l~~Il~~ 393 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG--CSDVMIG---NLPKILPI 393 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--cHHHHHH---HHHHHHHH
Q ss_pred HHHHhcccCchH--HHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHH
Q 000052 2425 LMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAI 2502 (2592)
Q Consensus 2425 l~~~m~~~~~~~--la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V 2502 (2592)
..+....+--.+ -||.++--+-. .-.+.+-+.. ..-+++.|+..||.. .|. ...+.+.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~st---dl~p~iqk~~-~e~l~~aL~~~ld~~----~~~------------rV~ahAa 453 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMST---DLQPEIQKKH-HERLPPALIALLDST----QNV------------RVQAHAA 453 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhh---hhcHHHHHHH-HHhccHHHHHHhccc----Cch------------HHHHHHH
Q ss_pred HHHHHHHhc
Q 000052 2503 EVLHAFAAE 2511 (2592)
Q Consensus 2503 ~~Lkam~~~ 2511 (2592)
.+|=.+..+
T Consensus 454 ~al~nf~E~ 462 (1075)
T KOG2171|consen 454 AALVNFSEE 462 (1075)
T ss_pred HHHHHHHHh
No 116
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.25 E-value=3.9e+02 Score=34.03 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=69.2
Q ss_pred hhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhh------ccccchhHHHHHHHHHHHHhCCHHHHHHHHHhccHHHHH
Q 000052 1699 VTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCT------ELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLL 1772 (2592)
Q Consensus 1699 ~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l------~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL 1772 (2592)
...+++|++.+.+-+..|..+.+ .+.+.-+..++ .-.....++..++=|+..++=+++....+.+.+++..|+
T Consensus 167 ~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~ 245 (312)
T PF03224_consen 167 QYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLA 245 (312)
T ss_dssp -HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHH
Confidence 35678899999999999999988 55556666666 223455788899999999999999999999999655555
Q ss_pred HHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhC
Q 000052 1773 PLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSG 1817 (2592)
Q Consensus 1773 ~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~Al~aL~rL~g 1817 (2592)
.++ +...||..-+.++-.+..|..
T Consensus 246 ~i~---------------------~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 246 DIL---------------------KDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHH---------------------HH--SHHHHHHHHHHHHHTTS
T ss_pred HHH---------------------HhcccchHHHHHHHHHHHHHh
Confidence 555 222345555666666666643
No 117
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=40.70 E-value=37 Score=42.20 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhhcccCCCCChhHHHHHHhhcCCHHHHHHHHHHHHH-HHhhhhcHHHHHHhCCchHHHHHHHhhhh
Q 000052 1073 CARAMAIVYEQHYTTIGPFEGTAHITVLLDRTDDRALRHRLLLLLKV-LMKVLANIEACVLVGGCVLAVDLLTVVHE 1148 (2592)
Q Consensus 1073 cL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~t~d~~~R~~Lll~~~~-L~~~~~N~~~~v~~~G~~llvdLltlah~ 1148 (2592)
.|+.++.+...+-...+.-.++.-++.+|+.+.++.+....|..+.. |+.++.|.+.|-..+|+..++.++...+.
T Consensus 114 vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 114 VLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 56777777666666666666799999999888888888777666555 67999999999999999999999965443
No 118
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=38.67 E-value=89 Score=34.07 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=52.7
Q ss_pred ccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000052 138 WVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2592)
Q Consensus 138 w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2592)
--++.|++|+.+|..+|+.+..++.+.+|+.|...|- | .+-|.+ --|+.+- .|-|.+ .+.++
T Consensus 20 ~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~----~-------~~~Fsf--EaGRrc~tG~G~f~f~t-~~~~~ 85 (104)
T cd00824 20 LGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGY----D-------SNLFSF--EAGRRCVTGEGIFTFQT-DRAEE 85 (104)
T ss_pred ceeEEEEECCCEEEEEecCCCceEEEeehHHeeeccc----C-------CCEEEE--EccCcCCCCCCEEEEEc-CCHHH
Confidence 3489999999999999998889999999999985332 2 244544 2554443 677776 36778
Q ss_pred HHHHHHHHHhh
Q 000052 214 IVSSLTKTAKS 224 (2592)
Q Consensus 214 ii~~i~~~A~~ 224 (2592)
|.+.|.+..+.
T Consensus 86 I~~~v~~~i~~ 96 (104)
T cd00824 86 IFQNVHETILA 96 (104)
T ss_pred HHHHHHHHHHH
Confidence 88888766443
No 119
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.49 E-value=71 Score=28.31 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=33.1
Q ss_pred hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000052 2126 PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2592)
Q Consensus 2126 ~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~ 2168 (2592)
++-.++.++.||+.-|+++|.. .++.+|..++-.|+-|+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKS----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTS----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcC----CCHHHHHHHHHHHHHHh
Confidence 5667788999999999999984 37899999999998775
No 120
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=36.42 E-value=71 Score=36.98 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHh
Q 000052 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILI 552 (2592)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~ 552 (2592)
.....+.|||=|+-++.|+.++..-|..+..|+.+|...+..+-..|+++|.++.
T Consensus 132 ~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 132 IEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3445799999999999999999999999999999999999999999999998863
No 121
>KOG1862 consensus GYF domain containing proteins [General function prediction only]
Probab=35.89 E-value=37 Score=47.63 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=39.4
Q ss_pred CCcceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcc
Q 000052 1169 EPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLD 1214 (2592)
Q Consensus 1169 ~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~ 1214 (2592)
..++.|||.+.+|+.+|||+..+|...+.+|....+..+|..--..
T Consensus 201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~ 246 (673)
T KOG1862|consen 201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPE 246 (673)
T ss_pred CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCc
Confidence 4578999999999999999999999999999998887776543333
No 122
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=33.64 E-value=1.2e+03 Score=30.55 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=51.0
Q ss_pred Chh-hHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhCc-----chHHHHHHHHHHhhcchHHHHHHHHcCChhhhH
Q 000052 2069 NIP-QLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAP-----ACREGVLHVLYALASTPELAWAAAKHGGVVYIL 2142 (2592)
Q Consensus 2069 ~vq-~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p-----~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL 2142 (2592)
+|+ ..|-.+-...+.|.+=++++.. ..+.++|+.+|.... +.-=.+.+..++-...|.+++..+..|.+--|-
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc 420 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLC 420 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHH
Confidence 443 3455444555678888888775 346777777775421 111124455555556889999999999988888
Q ss_pred HhhcCC
Q 000052 2143 ELLLPS 2148 (2592)
Q Consensus 2143 ~lL~~~ 2148 (2592)
++|.-.
T Consensus 421 ~~L~~~ 426 (526)
T COG5064 421 DLLDVV 426 (526)
T ss_pred HHHhcc
Confidence 877543
No 123
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.07 E-value=4.5e+02 Score=36.76 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchh-HHHH
Q 000052 2023 IKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSS-LLLL 2101 (2592)
Q Consensus 2023 l~~l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~v-l~~L 2101 (2592)
++....+++...+++.++..=.. .....+.+|++|+.. +-|..-.|.++.....+..=++.+.....+ +.+|
T Consensus 378 l~~t~~ale~a~~ic~~~~~g~~--~~~~el~~L~~~i~~-----PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LL 450 (584)
T PF04858_consen 378 LKSTKQALEKAHAICCNAARGSS--ELQAELPKLYSCIRY-----PVVAMGVLRWIESFLTDPSYFSSITELTPVHLALL 450 (584)
T ss_pred HHHHHHHHHHHHHHhhccccccc--hhHHHHHHHHHHhCC-----ChhhHHHHHHHHHHhcCcchhhhccccCchHHHHh
Confidence 45556678888888776652111 223466778888865 356677777777666555544433322222 2333
Q ss_pred HHHHhhCcchHHHHHHHHHHhhc-----chHHHHHHHHcCChhhhHHhhcCC--------------C-CCCcHHHHHHHH
Q 000052 2102 LQMLHYAPACREGVLHVLYALAS-----TPELAWAAAKHGGVVYILELLLPS--------------Q-QETPLQQRAAAA 2161 (2592)
Q Consensus 2102 l~lL~~~p~~~~~vL~~L~aL~S-----~~~LVkqal~~GgvlYLL~lL~~~--------------~-e~~~~~~R~~aA 2161 (2592)
-.....+|..+..+|++|..+.. .+.+++..+++..+-.++.|+.-+ + .--++-+|-=+-
T Consensus 451 deIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~ 530 (584)
T PF04858_consen 451 DEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVT 530 (584)
T ss_pred hHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHH
Confidence 33334678888889988877773 223466666665554444444322 1 112455566666
Q ss_pred HHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCc
Q 000052 2162 SLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGP 2197 (2592)
Q Consensus 2162 ~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP 2197 (2592)
++| .+.+.|..++-|...+.-.-=+...++||-.+
T Consensus 531 eVL-eii~PPYS~~Fv~~~l~ll~~~~i~~~~~~~~ 565 (584)
T PF04858_consen 531 EVL-EIIGPPYSPEFVQLFLPLLENAEIRGGMRTEG 565 (584)
T ss_pred HHH-HHcCCCCCHHHHHHHHHHHhchhhhhhhccCC
Confidence 666 34455565555555555544455566664443
No 124
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.83 E-value=38 Score=39.64 Aligned_cols=41 Identities=37% Similarity=0.575 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHHHHhhcc
Q 000052 1541 DEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1541 ~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AYevLsd~ 1581 (2592)
+.+.++..|+.+..+||||+... .-+++..++.||.+|.++
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~ 64 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDP 64 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHH
Confidence 44678899999999999999853 335788899999999986
No 125
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=32.68 E-value=1.4e+03 Score=30.96 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCC
Q 000052 2287 FLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGN 2366 (2592)
Q Consensus 2287 FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~ 2366 (2592)
++.-+++-+.+.+...++ .+......+.+-.||+..+ ....+-..+.++.|+..|.... .
T Consensus 140 ~l~~~~~~l~~~l~~~~~------~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~-------~------ 199 (429)
T cd00256 140 DLDYYFNWLKEQLNNITN------NDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNAT-------L------ 199 (429)
T ss_pred HHHHHHHHHHHHhhccCC------cchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhcc-------c------
Confidence 555555555555554321 1222344555556666543 3444555567889988886321 0
Q ss_pred CcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccC-chH--HHHHHHH
Q 000052 2367 SEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQG-GSI--LALETLK 2443 (2592)
Q Consensus 2367 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~-~~~--la~e~L~ 2443 (2592)
.-++.=.++-++=.||.+..+++.+...+ +|+.|+..++... ..+ +++-+|+
T Consensus 200 --------------------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-----~i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 200 --------------------GFQLQYQSIFCIWLLTFNPHAAEVLKRLS-----LIQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred --------------------cHHHHHHHHHHHHHHhccHHHHHhhcccc-----HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 01234567888999999999999887643 4888888877643 333 8889999
Q ss_pred HHhhcccc--chhHHHHHHHhhChHHHHHHhhhcc
Q 000052 2444 RVVVAGNR--ARDALVAQGLKVGLVDVLLGLLDWR 2476 (2592)
Q Consensus 2444 r~~~~~~r--~~~~lv~qal~~~Lv~~LL~lL~~~ 2476 (2592)
-+++.+.. ..+.+..+++.+|+.+ +|+.|..|
T Consensus 255 Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 255 NLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 99986421 1345778899999876 55666544
No 126
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.61 E-value=1.8e+02 Score=37.76 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000052 2110 ACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2592)
Q Consensus 2110 ~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsK 2183 (2592)
+-...+|+-|.-++.+=..+...+..||+.-+|..+.+ .++..|+.||.+++.+.. .-|+++..+..
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~----~~~~lR~~Aa~Vigt~~q---NNP~~Qe~v~E 164 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN----SDAELRELAARVIGTAVQ---NNPKSQEQVIE 164 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC----CcHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Confidence 44566888888888777788899999999999996655 479999999999999987 57888776644
No 127
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.96 E-value=1.5e+03 Score=30.64 Aligned_cols=296 Identities=17% Similarity=0.224 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccc---cccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLP---LFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQ 2103 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~---LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~ 2103 (2592)
.-+|+=+--.|++++.-.+.+--..+..+ --.+|+.-.+.+.-+....-.|++.++.+..|.-......-....|..
T Consensus 84 ~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~ 163 (442)
T KOG2759|consen 84 QYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKE 163 (442)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 45566677888888776555433222111 112223333455667787889999999999998766544434555655
Q ss_pred HHhh--CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHH-------------HHHH-----
Q 000052 2104 MLHY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAA-------------AASL----- 2163 (2592)
Q Consensus 2104 lL~~--~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~-------------aA~l----- 2163 (2592)
++.+ +++.+..+.++|..+.-.++.--......|+..|+.++.+.. ...|..-+ +|+.
T Consensus 164 ~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~--~~~QlQYqsifciWlLtFn~~~ae~~~~~~ 241 (442)
T KOG2759|consen 164 QLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTK--CGFQLQYQSIFCIWLLTFNPHAAEKLKRFD 241 (442)
T ss_pred HHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccC--cchhHHHHHHHHHHHhhcCHHHHHHHhhcc
Confidence 6654 456677777777777776666555556777777777664221 12222222 1122
Q ss_pred ----HHHHhcCCCCChHH-HHHHH---hhCcH--------HHHHHHhcCchhhHHHhhccccc-CcccccC-HHHHHHHH
Q 000052 2164 ----LGKLVGQPMHGPRV-AITLA---RFLPD--------GLVSVIRDGPGEAVVSALEQTTE-TPELVWT-PAMAASLS 2225 (2592)
Q Consensus 2164 ----L~kM~~DklhGPrV-~~~Ls---KfLP~--------~fv~amrdsP~~a~v~~fds~~E-nPELIWn-~~mR~~v~ 2225 (2592)
|.++..+. .-.|| |++|+ .+++. ....+|.....-.+++.++..-- -+||+=+ +-.++++.
T Consensus 242 li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 242 LIQDLSDIVKES-TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 22221110 11333 22222 22222 22333443322223444443322 1222111 11344444
Q ss_pred HHHHHHH--HHHHHHHhcCCcccccCCcchhhh-cccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhcc
Q 000052 2226 AQISTMA--SDLYREQMKGRVVDWDVPEQASAQ-QEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAAT 2302 (2592)
Q Consensus 2226 ~~i~~~~--~~~~~~Q~~~p~~~W~lPe~~~~~-~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~ 2302 (2592)
+.+..+. .+|..+...|. ..|+++-..... .+= +.-|++| . -+++...+..+..+
T Consensus 321 ~svq~LsSFDeY~sEl~sG~-L~WSP~Hk~e~FW~eN----------a~rlnen---------n--yellkiL~~lLe~s 378 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGR-LEWSPVHKSEKFWREN----------ADRLNEN---------N--YELLKILIKLLETS 378 (442)
T ss_pred HHHHhhccHHHHHHHHHhCC-cCCCccccccchHHHh----------HHHHhhc---------c--HHHHHHHHHHHhcC
Confidence 4444432 23555555554 788844321110 000 0011111 1 25667777777664
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCc
Q 000052 2303 HYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGR 2353 (2592)
Q Consensus 2303 ~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~ 2353 (2592)
+ |+-.+-+..-=+-.+.|+.|---+-|--+|.=.+++++|.|+++
T Consensus 379 ~------Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 379 N------DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred C------CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 2 44444555666778999999999999999999999999998763
No 128
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.97 E-value=1.7e+02 Score=33.41 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=31.7
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCC
Q 000052 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMD 170 (2592)
Q Consensus 136 ~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~ 170 (2592)
.+...|.|.|++.||..+|+.|++++..++.++|.
T Consensus 52 ~k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~IS 86 (142)
T cd01273 52 AKLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRIS 86 (142)
T ss_pred ccCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEE
Confidence 45679999999999999999999999998888886
No 129
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.38 E-value=1.4e+02 Score=33.84 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred ccCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccC--CCccccccCCCC
Q 000052 133 RRNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG--RKSKAFQAAPGT 209 (2592)
Q Consensus 133 ~~k~~w~-p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g--~~~r~~l~~~~~ 209 (2592)
+.++-|. ...|+|..-.|-.+|+.||+.+=+|++..|.-+... ++.. .+++=.++.---+ ++.-+|+|-|..
T Consensus 35 ~~G~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~-~~~~----~ynslL~~vvq~~~~~~~e~hlFQc~~ 109 (127)
T cd01210 35 KQGRVWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAF-TSME----LYNSILLFVVQEPGGSRTEMHIFQCQR 109 (127)
T ss_pred hcCCccccceEEEEcCCeEEEEcCCCcChhhcCCHhhcccccee-cCCC----CcCceEEEEEeCCCCCCCcEEEEEecc
Confidence 4578899 899999999999999999999999999999854221 2221 1345333321122 444599999863
Q ss_pred Ch-HHHHHHHH
Q 000052 210 TN-SAIVSSLT 219 (2592)
Q Consensus 210 ~~-~~ii~~i~ 219 (2592)
-. +.|...|.
T Consensus 110 v~A~~i~~DL~ 120 (127)
T cd01210 110 VGAEHLVEDLQ 120 (127)
T ss_pred ccHHHHHHHHH
Confidence 33 33444443
No 130
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=27.01 E-value=84 Score=32.59 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=41.9
Q ss_pred EEEEecCeeeeeCCCCc-ccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehh
Q 000052 39 ILCISNATIITLDPNTL-AVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2592)
Q Consensus 39 if~Ig~~~i~T~nP~tl-~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs~ 103 (2592)
.+.|++.||..|+++.- . ++.+.| .+|..+.=. ...|+|.++.+ ++..+++|.|+
T Consensus 8 ~LGv~~~GI~i~~~~~~~~-~~~f~W-~~I~~l~~~------~k~F~I~~~~~--~~~~~~~f~~~ 63 (90)
T PF09380_consen 8 WLGVSPRGISIYRDNNRIS-TQFFPW-SEISKLSFK------KKKFTIEVRDE--SKEIKLKFYTP 63 (90)
T ss_dssp EEEEESSEEEEEETTBSSS-SEEEEG-GGEEEEEEE------TTEEEEEESST--SSSEEEEEE-S
T ss_pred EEEEcCCEeEEEeCCCccc-ceeeeh-hheeEEEec------ccEEEEEEeec--ccceEEEEEEC
Confidence 46799999999998874 5 999999 799887752 35999998862 34466777654
No 131
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.73 E-value=91 Score=36.22 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCc--hHHHHHHHHHHHHHhhChH
Q 000052 1240 VGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEP--SIVEAAAALLKAVVTRNPK 1312 (2592)
Q Consensus 1240 l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p--~lve~~~~LL~~l~~~n~~ 1312 (2592)
+-..++..|..++. -++..|-..|.+.-|. ||-++|.|+.... ...+.++..|..+|..+|.
T Consensus 84 ~~~~ai~~L~~l~~----------~~~~~p~l~Rei~tp~-l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 84 VLEAAIITLTRLFD----------LIRGKPTLTREIATPN-LPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHHHHH----------HhcCCCchHHHHhhcc-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 33455666666555 4566777777777555 9999999999888 9999999999999999885
No 132
>PF05536 Neurochondrin: Neurochondrin
Probab=26.70 E-value=1.3e+02 Score=41.44 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=67.0
Q ss_pred HHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhCcchH
Q 000052 2033 LQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYAPACR 2112 (2592)
Q Consensus 2033 L~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~p~~~ 2112 (2592)
+...+..-|+++..-.-.+++|.|.+++... +...+..-|+++|..++++.+-.+++.+.+ .+..|...+...+...
T Consensus 80 vL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~--s~~~~v~dalqcL~~Ias~~~G~~aLl~~g-~v~~L~ei~~~~~~~~ 156 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMVSRIPLLLEILSSS--SDLETVDDALQCLLAIASSPEGAKALLESG-AVPALCEIIPNQSFQM 156 (543)
T ss_pred HHHHHcCChhhhcCHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHcCcHhHHHHHhcC-CHHHHHHHHHhCcchH
Confidence 3344444666654433335677788888754 224788999999999999999999999865 6788888888877778
Q ss_pred HHHHHHHHHhhcc
Q 000052 2113 EGVLHVLYALAST 2125 (2592)
Q Consensus 2113 ~~vL~~L~aL~S~ 2125 (2592)
+.++.+|..+++.
T Consensus 157 E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 157 EIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHHh
Confidence 8899999888863
No 133
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.63 E-value=2e+02 Score=38.34 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=54.2
Q ss_pred HhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC
Q 000052 2325 LRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS 2404 (2592)
Q Consensus 2325 l~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s 2404 (2592)
|.-...|.-.+...|++|++..++..++-+ .-|+.+|-.||-.
T Consensus 372 lSFD~glr~KMv~~GllP~l~~ll~~d~~~-------------------------------------~iA~~~lYh~S~d 414 (791)
T KOG1222|consen 372 LSFDSGLRPKMVNGGLLPHLASLLDSDTKH-------------------------------------GIALNMLYHLSCD 414 (791)
T ss_pred ccccccccHHHhhccchHHHHHHhCCcccc-------------------------------------hhhhhhhhhhccC
Confidence 344667778889999999999998765421 3578899889988
Q ss_pred hhHHHHHhhcCCCCCcchHHHHHHhcccCc
Q 000052 2405 TTCAEAMAATSTGTPQVVPILMKAIGWQGG 2434 (2592)
Q Consensus 2405 ~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~ 2434 (2592)
.-.-.-+|.|+| |+.+|+.+-...+
T Consensus 415 D~~K~MfayTdc-----i~~lmk~v~~~~~ 439 (791)
T KOG1222|consen 415 DDAKAMFAYTDC-----IKLLMKDVLSGTG 439 (791)
T ss_pred cHHHHHHHHHHH-----HHHHHHHHHhcCC
Confidence 888888999999 8999998877644
No 134
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=26.45 E-value=1.4e+02 Score=32.52 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred CccccccccCCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----
Q 000052 126 FPVLHLRRRNSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK---- 201 (2592)
Q Consensus 126 ~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r---- 201 (2592)
|.|.++...+..-..+.|+||+..|...+++..- .+.+|+.+...|- | .+-|.+. -|+.+-
T Consensus 8 F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~~--~~WPl~~LRRYG~----d-------~~~FsFE--AGRRC~tGeG 72 (102)
T cd01202 8 FRVINVDDDGNELGSGWLELTRTELTLYISGKEP--VVWPLLCLRRYGY----N-------SDLFSFE--SGRRCQTGEG 72 (102)
T ss_pred EEEEEECCCCCeeeeEEEEecceEEEEEcCCCCE--EEccHHHhHhhcc----C-------CCEEEEE--ccCcCCCCCC
Confidence 3444444444556689999999999999876544 4558888874332 2 2455442 444333
Q ss_pred ccccCCCCChHHHHHHHHHHHh
Q 000052 202 AFQAAPGTTNSAIVSSLTKTAK 223 (2592)
Q Consensus 202 ~~l~~~~~~~~~ii~~i~~~A~ 223 (2592)
+|.|.+ .+.++|.+.+++.-+
T Consensus 73 ~f~F~t-~~~~~if~~v~~~I~ 93 (102)
T cd01202 73 IFAFRC-KRAEELFNLLQSYIQ 93 (102)
T ss_pred EEEEEc-CCHHHHHHHHHHHHH
Confidence 788888 588889888876533
No 135
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=25.57 E-value=1.8e+02 Score=32.47 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=30.5
Q ss_pred ccceEEEEeeceEEEecCCCCceEEEeeccCCC
Q 000052 138 WVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMD 170 (2592)
Q Consensus 138 w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~ 170 (2592)
...|.|.|++.||..+|+.+++++..++.++|.
T Consensus 44 ~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~IS 76 (132)
T cd01267 44 IPKVELDISIKGVKIIDPKTKTVLHGHPLYNIS 76 (132)
T ss_pred CCeEEEEEEcCcEEEEeCCCCcEEEEcccceEE
Confidence 458999999999999999999999999999886
No 136
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=25.25 E-value=2.6e+02 Score=35.09 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=74.8
Q ss_pred hhHHHHHHHhccC---C-cCChhhHHHHHHHHHHHHhhcccCCCCCCCccccCcchhhhccCCCchHHHHHhh-hcCCch
Q 000052 1220 DIRELRWALAVRV---P-VLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAM-LSGEPS 1294 (2592)
Q Consensus 1220 ~ipeLrw~la~g~---p-~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlL-Lt~~p~ 1294 (2592)
-|.-+.+.+..++ + ......+...+|++|..+|-.|| .-|.+..+...+-.|+.+| -+..|.
T Consensus 83 Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp-------------~Sr~lF~r~~~m~lll~LL~~~~~~~ 149 (257)
T PF08045_consen 83 LVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHP-------------PSRKLFHREQNMELLLDLLSPSNPPA 149 (257)
T ss_pred hHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCc-------------hHHHHHhhhhhHHHHHHHhccCCCch
Confidence 3445666665443 1 11223345568899999999775 4578899999999999999 556788
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHhhhHHhhhhhcCCCChhhHHHHhhhhhhhhcc
Q 000052 1295 IVEAAAALLKAVVTRNPKAMIRLYSTGAFYFALAYPGSNLYSIAQLFSVTHVHQAF 1350 (2592)
Q Consensus 1295 lve~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L~y~gsn~l~ia~lL~~~H~~Qa~ 1350 (2592)
+.-+++.+|-.+|.|+|..+-.+-. -+.+.-|+++++..+..|..
T Consensus 150 i~~a~L~tLv~iLld~p~N~r~FE~-----------~~Gl~~v~~llk~~~~~~~~ 194 (257)
T PF08045_consen 150 IQSACLDTLVCILLDSPENQRDFEE-----------LNGLSTVCSLLKSKSTDREL 194 (257)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHH-----------hCCHHHHHHHHccccccHHH
Confidence 8899999999999999984332222 23466778888877766653
No 137
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=24.87 E-value=1.3e+02 Score=31.58 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=46.8
Q ss_pred ccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehh
Q 000052 36 YKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSR 103 (2592)
Q Consensus 36 YkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs~ 103 (2592)
-...+-|++.||..|+.++ ..|.++| ++|..++-. ...|+|.++... ++..++.|.+.
T Consensus 15 ~~~~lGV~~~Gi~v~~~~~--~~~~f~W-~~I~~isf~------~k~F~i~~~~~~-~~~~~~~f~~~ 72 (92)
T cd00836 15 TELLLGVTAEGILVYDDGT--PINEFPW-PEIRKISFK------RKKFTLKVRDKD-GQEITLSFQTP 72 (92)
T ss_pred CeEEEEEeCCCcEEecCCC--EEEEEEc-ccceEEEEc------CCEEEEEEecCc-CceeeEEEECC
Confidence 5677899999999999887 7899999 799888873 359999998642 45677888755
No 138
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=24.58 E-value=2.5e+02 Score=40.40 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=79.3
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhhccchhcccchhhHHHHHHhhcCCCChhHHHHH
Q 000052 527 GRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMA 606 (2592)
Q Consensus 527 ~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs~ll~~~~f~~~L~~~l~~~~~~aLv~~a 606 (2592)
+-+..++.-.+-+|+.-|+.+|+.++...|.- .+..+..++..++.+++.--.-....++
T Consensus 696 ~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~--------------------l~~~~~~iL~~ii~ll~Spllqg~al~~ 755 (1233)
T KOG1824|consen 696 VELPPLISESDLHVTQLAVAFLTTLAIIQPSS--------------------LLKISNPILDEIIRLLRSPLLQGGALSA 755 (1233)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH--------------------HHHHhhhhHHHHHHHhhCccccchHHHH
Confidence 44556666677778888888888888633322 2335567889999999963233456789
Q ss_pred HHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHH--HhhCCChhhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000052 607 VVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLF--ALFGHPAESVRETVAVIMRTIAEEDAIAAESMRD 677 (2592)
Q Consensus 607 ~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf--~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~ 677 (2592)
+++||++++ ++.+++-. |..++..+.+---.-- -|-.|--++|.+-|+.|..+-=++....|.+|-.
T Consensus 756 ~l~~f~alV---~t~~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~ 824 (1233)
T KOG1824|consen 756 LLLFFQALV---ITKEPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQ 824 (1233)
T ss_pred HHHHHHHHH---hcCCCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 999999999 77777765 6666655521100000 1222333467777777776655555555555433
No 139
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.74 E-value=6.6e+02 Score=36.28 Aligned_cols=198 Identities=16% Similarity=0.111 Sum_probs=114.9
Q ss_pred chhHHHHHHHHHHHHHhhhcccCCCCChhHHHHHHhh-----cCCHHHHHHHHHHHHHHHhhhhcHHHHHHhCCchHHHH
Q 000052 1067 SSVRELCARAMAIVYEQHYTTIGPFEGTAHITVLLDR-----TDDRALRHRLLLLLKVLMKVLANIEACVLVGGCVLAVD 1141 (2592)
Q Consensus 1067 ~~~r~LcL~am~ivY~r~~~~ig~f~~~~y~~~Ll~~-----t~d~~~R~~Lll~~~~L~~~~~N~~~~v~~~G~~llvd 1141 (2592)
+++-.+..|||+-+.+-|-.-++---+-+-|=.|+++ +.|-+| .-|..++ +.++.--+.|+.+||+-..+.
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAE--Q~LqALE--~iSR~H~~AiL~AG~l~a~Ls 301 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAE--QSLQALE--KISRRHPKAILQAGALSAVLS 301 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHH--HHHHHHH--HHHhhccHHHHhcccHHHHHH
Confidence 3455777788888877777666644332222223333 244333 2232223 356667789999999886555
Q ss_pred HHHhhhhccCCCccccccchhhcccccCCcceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhh
Q 000052 1142 LLTVVHETSERTAIPLQSNLLAATAFMEPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDI 1221 (2592)
Q Consensus 1142 Lltlah~~~~r~~~~~q~n~i~a~~~~~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~i 1221 (2592)
-+.--.-|.+|..+.+..|+- .. .+..+.-|+ +..+
T Consensus 302 ylDFFSi~aQR~AlaiaaN~C--ks--i~sd~f~~v----------------------------------------~eal 337 (1051)
T KOG0168|consen 302 YLDFFSIHAQRVALAIAANCC--KS--IRSDEFHFV----------------------------------------MEAL 337 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hc--CCCccchHH----------------------------------------HHHH
Confidence 555445566665444444432 00 011111121 3457
Q ss_pred HHHHHHHhccCCcCChhhHHHHHHHHHHHHhhcccCCCCCCCccccCcchhhhccCCCchHHHHHhhhcCCchH----HH
Q 000052 1222 RELRWALAVRVPVLTPTQVGEAALAILHNMVSAHSDLDDAGEIVTPTPRVKWILSSSRCLPHIAQAMLSGEPSI----VE 1297 (2592)
Q Consensus 1222 peLrw~la~g~p~l~~~~l~~~~L~iL~~~~~~~p~~d~~g~ii~P~Prvkr~Ls~~~~LphlvQlLLt~~p~l----ve 1297 (2592)
|-|.-.|..-. .+ .++.++++++.-- | -.+|-|.--..|++..-+-.++|||.+.+++| ..
T Consensus 338 PlL~~lLs~~D-----~k---~ies~~ic~~ri~---d----~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 338 PLLTPLLSYQD-----KK---PIESVCICLTRIA---D----GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred HHHHHHHhhcc-----ch---hHHHHHHHHHHHH---H----hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 88887773211 11 2333333332200 0 12444555578999999999999999998876 55
Q ss_pred HHHHHHHHHHhhChHHHHHHHhhhHHhhhh
Q 000052 1298 AAAALLKAVVTRNPKAMIRLYSTGAFYFAL 1327 (2592)
Q Consensus 1298 ~~~~LL~~l~~~n~~~~~~Ly~tGvf~f~L 1327 (2592)
.+..||..+..+.|...-.|+++++-+-+.
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~ 432 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLK 432 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHH
Confidence 666777777777788888888888877554
No 140
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.63 E-value=2.2e+02 Score=39.51 Aligned_cols=103 Identities=23% Similarity=0.361 Sum_probs=72.2
Q ss_pred HHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccc
Q 000052 2292 LDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADR 2371 (2592)
Q Consensus 2292 l~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 2371 (2592)
+|+|++.+=.-.. ..|+++-..|..|+|-||.++|.= - .-|++.++.-|-+.++
T Consensus 213 iD~Fle~lFalan---D~~~eVRk~vC~alv~Llevr~dk--l---~phl~~IveyML~~tq------------------ 266 (885)
T KOG2023|consen 213 IDKFLEILFALAN---DEDPEVRKNVCRALVFLLEVRPDK--L---VPHLDNIVEYMLQRTQ------------------ 266 (885)
T ss_pred HHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHhcHHh--c---ccchHHHHHHHHHHcc------------------
Confidence 3666665533222 235677788999999999999963 2 3356667777766542
Q ss_pred cccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCchH
Q 000052 2372 TYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI 2436 (2592)
Q Consensus 2372 ~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~~ 2436 (2592)
.+.|.|...|=...|.+|.++.|.+.+... -+.+||.|+..|.-..+-+
T Consensus 267 -------------d~dE~VALEACEFwla~aeqpi~~~~L~p~---l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 267 -------------DVDENVALEACEFWLALAEQPICKEVLQPY---LDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred -------------CcchhHHHHHHHHHHHHhcCcCcHHHHHHH---HHHHHHHHHccCccccccH
Confidence 122346677889999999999999999874 2457999999998765443
No 141
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=23.47 E-value=1.6e+02 Score=34.01 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=59.4
Q ss_pred hHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhc-cccchhHH
Q 000052 1664 ELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTE-LELVPGAV 1742 (2592)
Q Consensus 1664 EL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~-l~~~~~l~ 1742 (2592)
+..++.+-+.+.+.+.-++.-.. .+.-..++.-+.-+|.+ .++.-..|....++..-+..... .......+
T Consensus 34 ~~~~~~~~~~~~~~i~~~~~~~~-----~d~~i~~~~~l~~lfp~---~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~ 105 (157)
T PF11701_consen 34 DAAREEFKEKISDFIESLLDEGE-----MDSLIIAFSALTALFPG---PPDVGSELFLSEGFLESLLPLASRKSKDRKVQ 105 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHH-----CCHHHHHHHHHHHHCTT---THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccc-----chhHHHHHHHHHHHhCC---CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHH
Confidence 66777888888888887763221 12111111122212222 12233344444555544444443 34556799
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhccHH
Q 000052 1743 DAALQTIAHVSVSSELQDALLKAGALW 1769 (2592)
Q Consensus 1743 ~aALe~v~~~a~~~elq~~i~~~GVLw 1769 (2592)
.++||++++-|.|..|+..|.+.|+=|
T Consensus 106 ~~~lell~aAc~d~~~r~~I~~~~~~~ 132 (157)
T PF11701_consen 106 KAALELLSAACIDKSCRTFISKNYVSW 132 (157)
T ss_dssp HHHHHHHHHHTTSHHHHHCCHHHCHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 999999999999999999999999776
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=23.01 E-value=2.2e+02 Score=39.26 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=120.0
Q ss_pred HhhCcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC-CCCChHHHHHHHh
Q 000052 2105 LHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ-PMHGPRVAITLAR 2183 (2592)
Q Consensus 2105 L~~~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D-klhGPrV~~~LsK 2183 (2592)
...=|++...++++++.||.. ....+|.++.+-|-.++.| +-|=+||.-+|.+
T Consensus 50 fk~FP~l~~~Ai~a~~DLcED--------------------------ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 50 FKHFPDLQEEAINAQLDLCED--------------------------EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HCC-GGGHHHHHHHHHHHHT---------------------------SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HhhChhhHHHHHHHHHHHHhc--------------------------ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 344577777788887777742 2344555555555555543 3444555555555
Q ss_pred hCc-----------HHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcc
Q 000052 2184 FLP-----------DGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQ 2252 (2592)
Q Consensus 2184 fLP-----------~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~ 2252 (2592)
+|= ..++.-++-+|..+.-.+|++..-++. =++.+|+++-.+|..-...+-..... |. +-.|.
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~--~de~~Re~~lkFl~~kl~~l~~~~~~-p~---~E~e~ 177 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS--GDEQVRERALKFLREKLKPLKPELLT-PQ---KEMEE 177 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H--S-HHHHHHHHHHHHHHGGGS-TTTS-------HHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--CchHHHHHHHHHHHHHHhhCcHHHhh-ch---HHHHH
Confidence 554 377888888888776677777652221 14568888777764321111000000 00 00111
Q ss_pred hhh---hcccCCCcEEeeeeehh----hccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHH
Q 000052 2253 ASA---QQEMRDEPQVGGIYVRL----FLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLL 2325 (2592)
Q Consensus 2253 ~~~---~~~l~~El~VGGVYlRL----Fl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll 2325 (2592)
|.. -..+.+ |-|+=..+ +-.=+-|..-.|-....+|++-+.+.+.-..+ -+..|+ +.+-.-+-|+.
T Consensus 178 ~i~~~ikkvL~D---VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~-f~~sD~---e~Idrli~C~~ 250 (556)
T PF05918_consen 178 FIVDEIKKVLQD---VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQP-FDPSDP---ESIDRLISCLR 250 (556)
T ss_dssp HHHHHHHHHCTT-----HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS----SSSH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCC-CCCcCH---HHHHHHHHHHH
Confidence 110 111222 22222222 22334444455888888899988887754322 112233 55667778888
Q ss_pred hcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCCh
Q 000052 2326 RVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAST 2405 (2592)
Q Consensus 2326 ~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~ 2405 (2592)
++-|-.+-.+.+ .+|+.-|..+-=| . ++ .. ++..+..-|+++-++|...
T Consensus 251 ~Alp~fs~~v~S----skfv~y~~~kvlP---~---------------l~--------~l-~e~~kl~lLk~lAE~s~~~ 299 (556)
T PF05918_consen 251 QALPFFSRGVSS----SKFVNYMCEKVLP---K---------------LS--------DL-PEDRKLDLLKLLAELSPFC 299 (556)
T ss_dssp HHGGG-BTTB------HHHHHHHHHHTCC---C---------------TT--------------HHHHHHHHHHHHHTT-
T ss_pred HhhHHhcCCCCh----HHHHHHHHHHhcC---C---------------hh--------hC-ChHHHHHHHHHHHHHcCCC
Confidence 888877665544 6677666643211 0 00 11 1334566677777776654
Q ss_pred hHHHHHhhcCCCCCcchHHHHHHhccc
Q 000052 2406 TCAEAMAATSTGTPQVVPILMKAIGWQ 2432 (2592)
Q Consensus 2406 ~Cv~ala~~~~~~p~~~~~l~~~m~~~ 2432 (2592)
. ++-...++ |.+...|++-|-..
T Consensus 300 ~---~~d~~~~L-~~i~~~L~~ymP~~ 322 (556)
T PF05918_consen 300 G---AQDARQLL-PSIFQLLKKYMPSK 322 (556)
T ss_dssp ------THHHHH-HHHHHHHHTTS---
T ss_pred C---cccHHHHH-HHHHHHHHHhCCCC
Confidence 3 22222333 45566666666554
No 143
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.99 E-value=2.4e+02 Score=31.79 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeEeccccCCC
Q 000052 106 ASILTELHRIRWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKR 184 (2592)
Q Consensus 106 a~lLT~l~r~r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~-g~~~~~y~y~dm~~~~i~~l~d~~~~~ 184 (2592)
.++|-++.+--. -+..+..|-||.+.|+|.+|-.+|+++ .++++-..-|.+. |.-+ |+
T Consensus 20 mdvln~AI~~l~-------------~~~~~~~w~~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lS---F~Gv----gK- 78 (124)
T cd01271 20 MEILNSAIDNLM-------------SSSNKEDWLSVNVNVAPSTITVISEKNEEEVLVECRVRYLS---FLGI----GK- 78 (124)
T ss_pred HHHHHHHHHHHH-------------hcCCcccCceEEEEeCCceEEEEccCccceeeeeeeEEEec---cccC----CC-
Confidence 577777776431 012467999999999999999999864 4677766655554 3211 21
Q ss_pred CCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHHH
Q 000052 185 SETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLTK 220 (2592)
Q Consensus 185 ~~~~gfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~~ 220 (2592)
+ .-.|++.--.| ..| -|.|.|+++-.++-+.+.+
T Consensus 79 d-~k~fafI~~~~-~~~f~ChVF~ce~~A~~ls~av~a 114 (124)
T cd01271 79 D-VHTCAFIMDTG-NQRFECHVFWCEPNAGNVSKAVEA 114 (124)
T ss_pred C-ccEEEEEEecC-CCcEEEEEEEecCChHHHHHHHHH
Confidence 1 23555432222 222 6888888776667666654
No 144
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.94 E-value=1.5e+02 Score=33.15 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=33.8
Q ss_pred CCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc
Q 000052 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE 1563 (2592)
Q Consensus 1498 ~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~ 1563 (2592)
..|+.+||++||+|++ ..+.++|-|.|-+|=.-.++.|.+.
T Consensus 54 ~~iTlqEa~qILnV~~-------------------------~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKE-------------------------PLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccHHHHhhHhCCCC-------------------------CCCHHHHHHHHHHHHhccCcccCcc
Confidence 4489999999999984 4578899999999988877776653
No 145
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.52 E-value=1.1e+02 Score=33.48 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=58.7
Q ss_pred EEEEe-eccc--ccccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeee
Q 000052 25 YLVVK-HSWR--GRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFS 101 (2592)
Q Consensus 25 y~vtK-hSWr--GkYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFS 101 (2592)
.|.|| -|.- ++|-+|+ ||..|+--||-.+.+--=|-+| +.+.-|..++...+-.-+|.|-+.+. +| .+|+
T Consensus 10 ~~~t~gtaYlg~~~~Gkil-iGDkgfEFYn~~nv~k~iqipW-s~i~~v~vsvs~KK~~~~f~i~td~~--gk---~~Fa 82 (122)
T COG4687 10 DYSTKGTAYLGFAEYGKIL-IGDKGFEFYNDRNVEKFIQIPW-SEINEVDVSVSLKKWGRQFSIFTDTQ--GK---VRFA 82 (122)
T ss_pred EEEecceEEeehhhcCeEE-EcccceeecCCCChhheeEecH-HHhheeheeehhhhhcceEEEEEcCC--ce---EEEE
Confidence 55666 4443 3788887 8999999999888766666677 56654443332334556999997663 34 9999
Q ss_pred hhhhhHHHHHHHHh
Q 000052 102 SRFRASILTELHRI 115 (2592)
Q Consensus 102 s~~Ra~lLT~l~r~ 115 (2592)
|..-..+|.-.-.+
T Consensus 83 Skdsg~iLk~ir~y 96 (122)
T COG4687 83 SKDSGKILKKIREY 96 (122)
T ss_pred eCCchhHHHHHHHH
Confidence 99999988765443
Done!