Query 000052
Match_columns 2592
No_of_seqs 484 out of 2190
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 10:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2och_A Hypothetical protein DN 99.2 1.9E-11 6.6E-16 118.6 5.7 66 1502-1609 7-72 (73)
2 1iur_A KIAA0730 protein; DNAJ 99.1 4.6E-11 1.6E-15 120.3 7.4 62 1497-1583 10-75 (88)
3 2dn9_A DNAJ homolog subfamily 99.1 4.6E-11 1.6E-15 117.6 6.2 70 1499-1610 3-75 (79)
4 2o37_A Protein SIS1; HSP40, J- 99.1 5.4E-11 1.8E-15 120.6 5.7 57 1501-1582 6-62 (92)
5 2ctp_A DNAJ homolog subfamily 99.1 5.7E-11 1.9E-15 116.7 5.5 70 1499-1610 3-74 (78)
6 2ej7_A HCG3 gene; HCG3 protein 99.1 9.6E-11 3.3E-15 116.0 6.1 68 1501-1610 7-78 (82)
7 2ctr_A DNAJ homolog subfamily 99.1 1E-10 3.5E-15 117.6 6.3 70 1499-1610 3-74 (88)
8 2cug_A Mkiaa0962 protein; DNAJ 99.1 1.2E-10 4E-15 117.1 6.0 68 1501-1610 15-84 (88)
9 2ys8_A RAB-related GTP-binding 99.0 2.4E-10 8.2E-15 115.5 7.5 59 1502-1585 26-86 (90)
10 1hdj_A Human HSP40, HDJ-1; mol 99.0 1.1E-10 3.8E-15 114.3 4.9 65 1504-1610 4-70 (77)
11 2ctw_A DNAJ homolog subfamily 99.0 1.5E-10 5E-15 120.9 6.0 72 1496-1609 10-84 (109)
12 2yua_A Williams-beuren syndrom 99.0 2.6E-10 8.8E-15 117.1 6.5 60 1498-1582 12-74 (99)
13 2ctq_A DNAJ homolog subfamily 99.0 1.3E-10 4.4E-15 121.9 4.1 69 1501-1611 18-89 (112)
14 2guz_A Mitochondrial import in 99.0 4.3E-10 1.5E-14 108.8 6.9 61 1497-1582 8-68 (71)
15 2dmx_A DNAJ homolog subfamily 99.0 3.2E-10 1.1E-14 114.7 6.1 67 1502-1610 8-78 (92)
16 1faf_A Large T antigen; J doma 99.0 4.4E-10 1.5E-14 111.0 5.9 57 1502-1582 10-66 (79)
17 2lgw_A DNAJ homolog subfamily 99.0 2.7E-10 9.4E-15 117.0 4.6 65 1504-1610 3-71 (99)
18 1gh6_A Large T antigen; tumor 98.9 3.1E-10 1.1E-14 119.4 4.3 55 1502-1582 7-63 (114)
19 1wjz_A 1700030A21RIK protein; 98.9 2.6E-10 8.9E-15 115.7 3.6 59 1499-1582 12-79 (94)
20 2qwo_B Putative tyrosine-prote 98.9 2.7E-10 9.2E-15 115.4 1.6 43 1538-1580 43-91 (92)
21 1bq0_A DNAJ, HSP40; chaperone, 98.9 2.8E-10 9.7E-15 117.6 1.1 65 1504-1610 4-71 (103)
22 2qsa_A DNAJ homolog DNJ-2; J-d 98.8 8E-10 2.7E-14 115.2 3.3 56 1502-1582 14-76 (109)
23 2pf4_E Small T antigen; PP2A, 98.8 5E-10 1.7E-14 125.3 1.7 67 1502-1609 10-76 (174)
24 3apq_A DNAJ homolog subfamily 98.8 1.6E-09 5.6E-14 123.8 5.0 65 1504-1610 3-70 (210)
25 2l6l_A DNAJ homolog subfamily 98.7 3.2E-09 1.1E-13 117.2 4.2 64 1500-1588 7-79 (155)
26 3lz8_A Putative chaperone DNAJ 98.7 9.7E-10 3.3E-14 134.7 0.0 67 1497-1588 22-90 (329)
27 3ag7_A Putative uncharacterize 98.7 1.4E-09 4.8E-14 113.1 1.1 43 1539-1581 51-103 (106)
28 1n4c_A Auxilin; four helix bun 98.7 4.8E-09 1.6E-13 118.1 1.8 58 1503-1585 117-180 (182)
29 2jdq_A Importin alpha-1 subuni 98.6 6.4E-06 2.2E-10 102.5 28.3 345 2026-2510 37-390 (450)
30 1fpo_A HSC20, chaperone protei 98.6 1.6E-08 5.5E-13 113.5 2.9 56 1504-1582 2-65 (171)
31 3hho_A CO-chaperone protein HS 98.6 1.6E-08 5.4E-13 113.9 2.6 56 1504-1582 5-68 (174)
32 3bvo_A CO-chaperone protein HS 98.5 2.2E-08 7.7E-13 115.4 3.6 57 1503-1582 43-107 (207)
33 1wa5_B Importin alpha subunit; 98.4 4.9E-05 1.7E-09 97.9 30.4 326 2026-2474 104-438 (530)
34 4b8j_A Importin subunit alpha- 98.4 6.5E-05 2.2E-09 96.5 31.0 346 2026-2510 91-443 (528)
35 3uo3_A J-type CO-chaperone JAC 98.4 2.2E-08 7.6E-13 113.2 -1.2 44 1539-1582 29-72 (181)
36 2z6g_A B-catenin; FULL-length, 98.3 0.00028 9.6E-09 95.9 35.7 509 1667-2448 148-664 (780)
37 3apo_A DNAJ homolog subfamily 98.3 1E-07 3.6E-12 128.8 0.2 57 1501-1582 19-78 (780)
38 3tpo_A Importin subunit alpha- 98.2 0.00044 1.5E-08 89.5 32.9 367 2027-2529 94-471 (529)
39 2guz_B Mitochondrial import in 98.1 2.3E-06 8E-11 81.6 6.0 58 1500-1580 1-58 (65)
40 2z6h_A Catenin beta-1, beta-ca 98.1 0.0013 4.6E-08 87.0 34.5 399 2026-2513 115-530 (644)
41 3ul1_B Importin subunit alpha- 98.1 0.00067 2.3E-08 87.7 30.5 329 2027-2475 75-412 (510)
42 4b8j_A Importin subunit alpha- 98.1 0.00027 9.3E-09 90.8 26.7 317 2053-2511 76-401 (528)
43 3tpo_A Importin subunit alpha- 98.1 0.0038 1.3E-07 80.9 37.3 135 2026-2168 310-448 (529)
44 2z6h_A Catenin beta-1, beta-ca 98.1 0.0054 1.8E-07 81.3 38.2 406 1643-2253 114-559 (644)
45 1jdh_A Beta-catenin; beta-cate 98.0 0.00073 2.5E-08 86.0 27.0 361 2026-2475 34-408 (529)
46 1wa5_B Importin alpha subunit; 98.0 0.00078 2.7E-08 86.8 27.1 319 2052-2512 88-414 (530)
47 2jdq_A Importin alpha-1 subuni 97.9 0.0017 5.8E-08 80.8 27.3 308 2067-2511 33-348 (450)
48 1jdh_A Beta-catenin; beta-cate 97.9 0.0017 5.8E-08 82.7 27.2 318 2052-2511 18-340 (529)
49 3ul1_B Importin subunit alpha- 97.9 0.0034 1.2E-07 81.1 29.8 292 2067-2475 70-369 (510)
50 2z6g_A B-catenin; FULL-length, 97.8 0.0057 2E-07 83.2 32.4 360 2027-2475 168-541 (780)
51 3now_A UNC-45 protein, SD10334 97.8 0.0026 8.8E-08 86.5 28.4 135 2028-2169 600-737 (810)
52 4hxt_A De novo protein OR329; 97.8 0.00067 2.3E-08 77.4 19.4 233 2053-2448 4-242 (252)
53 4db8_A Armadillo-repeat protei 97.7 0.00094 3.2E-08 76.9 19.6 105 2055-2167 16-123 (252)
54 3now_A UNC-45 protein, SD10334 97.7 0.02 6.8E-07 78.0 34.9 338 2056-2532 382-756 (810)
55 1xm9_A Plakophilin 1; armadill 97.7 0.0019 6.5E-08 82.4 23.9 370 2026-2475 19-430 (457)
56 3l6x_A Catenin delta-1; cateni 97.6 0.0051 1.7E-07 81.0 26.8 383 2027-2524 66-486 (584)
57 4hxt_A De novo protein OR329; 97.6 0.006 2E-07 69.5 24.1 236 2098-2513 4-244 (252)
58 1xm9_A Plakophilin 1; armadill 97.5 0.0076 2.6E-07 76.9 25.2 138 2026-2171 301-451 (457)
59 1wh2_A Hypothetical protein AT 97.2 0.0003 1E-08 69.4 5.4 55 1169-1224 15-69 (78)
60 4db6_A Armadillo repeat protei 97.1 0.0085 2.9E-07 67.1 16.6 177 2026-2232 29-208 (210)
61 3nmz_A APC variant protein; pr 97.0 0.15 5E-06 65.6 29.2 116 2050-2170 329-451 (458)
62 3nmz_A APC variant protein; pr 96.9 0.028 9.7E-07 72.1 21.4 341 2037-2511 56-451 (458)
63 3l6x_A Catenin delta-1; cateni 96.9 0.082 2.8E-06 69.8 25.5 138 2026-2170 326-477 (584)
64 4db8_A Armadillo-repeat protei 96.8 0.007 2.4E-07 69.6 13.2 137 2026-2170 29-168 (252)
65 2y4t_A DNAJ homolog subfamily 96.8 0.00063 2.2E-08 83.7 4.5 50 1539-1588 393-448 (450)
66 3nmw_A APC variant protein; AR 96.7 0.44 1.5E-05 59.2 28.8 265 2072-2511 50-335 (354)
67 4db6_A Armadillo repeat protei 96.7 0.0071 2.4E-07 67.7 11.8 136 2026-2169 71-209 (210)
68 3nmw_A APC variant protein; AR 96.6 0.38 1.3E-05 59.8 27.5 147 2027-2180 189-343 (354)
69 1xqr_A HSPBP1 protein; armadil 95.8 0.048 1.6E-06 66.2 13.2 136 2026-2170 57-197 (296)
70 1xqr_A HSPBP1 protein; armadil 95.2 0.047 1.6E-06 66.3 10.2 148 2026-2183 99-249 (296)
71 3k3v_A Protein SMY2; GYF domai 94.6 0.022 7.5E-07 58.6 4.2 51 1171-1221 15-73 (100)
72 3opb_A SWI5-dependent HO expre 93.3 6.7 0.00023 53.3 24.8 372 2027-2532 230-612 (778)
73 3tt9_A Plakophilin-2; cell adh 91.9 0.61 2.1E-05 54.9 11.0 149 2027-2183 28-191 (233)
74 4fdd_A Transportin-1; heat rep 90.5 3.8 0.00013 55.9 18.3 160 2027-2197 146-312 (852)
75 3grl_A General vesicular trans 86.7 7.5 0.00026 51.7 16.3 198 501-725 141-354 (651)
76 1w63_A Adapter-related protein 85.4 1.1E+02 0.0037 40.6 26.7 133 2027-2186 88-222 (618)
77 3tt9_A Plakophilin-2; cell adh 84.4 2.6 9E-05 49.5 9.5 111 2053-2170 10-125 (233)
78 3opb_A SWI5-dependent HO expre 81.0 2.4 8.1E-05 57.6 8.2 140 2027-2171 475-637 (778)
79 4fdd_A Transportin-1; heat rep 77.9 90 0.0031 42.5 22.4 240 2136-2511 45-286 (852)
80 2qk2_A LP04448P; mini spindles 76.0 12 0.00042 43.0 11.4 170 2027-2236 33-208 (242)
81 2bpt_A Importin beta-1 subunit 75.7 2.3E+02 0.0078 38.1 25.4 129 2027-2169 242-398 (861)
82 1ibr_B P95, importin beta-1 su 75.3 38 0.0013 41.8 16.3 56 2389-2448 381-438 (462)
83 1b3u_A Protein (protein phosph 74.5 57 0.0019 41.6 18.1 96 2066-2170 176-272 (588)
84 4gmo_A Putative uncharacterize 72.8 1.7E+02 0.0057 39.4 22.6 77 2099-2181 37-115 (684)
85 1mix_A Talin; focal adhesion, 72.2 6.2 0.00021 44.7 7.5 82 23-115 116-200 (206)
86 1b3u_A Protein (protein phosph 67.6 44 0.0015 42.7 14.8 76 2389-2474 257-334 (588)
87 1syx_B CD2BP2, CD2 antigen cyt 66.2 4.9 0.00017 40.5 4.3 51 1171-1221 25-80 (86)
88 4f7g_A Talin-1; alpha-helix bu 64.4 9.7 0.00033 44.0 7.1 81 23-114 127-210 (222)
89 4gmo_A Putative uncharacterize 59.6 9.8 0.00033 51.2 6.8 138 2027-2170 52-215 (684)
90 1qgr_A Protein (importin beta 56.7 4.5E+02 0.016 35.2 22.2 56 2389-2448 381-438 (876)
91 3oc3_A Helicase MOT1, MOT1; re 54.7 18 0.0006 47.4 7.3 133 522-707 297-430 (800)
92 2qk2_A LP04448P; mini spindles 45.3 2.8E+02 0.0097 31.5 15.2 135 499-670 74-210 (242)
93 2bpt_A Importin beta-1 subunit 45.0 7E+02 0.024 33.3 21.2 55 2389-2447 384-440 (861)
94 3hie_A Protein PSL1, exocyst c 44.7 45 0.0015 37.6 7.8 76 33-116 62-147 (171)
95 1j0w_A Downstream of tyrosine 42.9 51 0.0017 34.3 7.3 70 139-222 21-95 (103)
96 3f0w_A NUMB-R, NUMB-like prote 41.8 53 0.0018 36.6 7.9 75 137-219 76-153 (168)
97 2f31_A Diaphanous protein homo 41.8 1.6E+02 0.0054 34.3 12.3 126 498-636 70-196 (233)
98 3grl_A General vesicular trans 41.3 53 0.0018 43.9 9.0 119 2027-2148 140-266 (651)
99 3eg5_B Protein diaphanous homo 40.6 3.8E+02 0.013 33.6 16.2 139 501-652 139-280 (383)
100 2cy5_A Epidermal growth factor 40.1 70 0.0024 35.1 8.2 79 133-217 42-124 (140)
101 3d8d_A Amyloid beta A4 precurs 39.8 1E+02 0.0036 34.0 9.5 83 134-222 47-134 (148)
102 4ffb_C Protein STU2; tubulin f 38.9 78 0.0027 37.2 9.3 135 2028-2176 28-173 (278)
103 1wgu_A APBB2, amyloid beta (A4 37.9 1.1E+02 0.0038 33.2 9.4 93 104-220 32-128 (136)
104 3ivf_A Talin-1; FERM domain, c 37.4 30 0.001 43.0 5.6 83 21-114 279-364 (371)
105 3so6_A LDL receptor adaptor pr 36.8 1E+02 0.0036 32.6 9.0 65 136-208 41-107 (137)
106 2qk1_A Protein STU2; STU2P, XM 34.9 68 0.0023 37.6 7.8 135 2027-2170 34-176 (249)
107 3eg5_B Protein diaphanous homo 33.7 63 0.0022 40.6 7.7 89 1663-1755 104-192 (383)
108 1p5t_A DOK1, docking protein 1 33.7 64 0.0022 34.8 6.6 70 140-223 26-103 (127)
109 3dxe_A Amyloid beta A4 protein 33.6 73 0.0025 34.9 7.1 76 135-220 42-119 (140)
110 2v76_A Docking protein 1; alte 33.3 65 0.0022 33.8 6.4 69 140-222 24-100 (107)
111 4dbb_A Amyloid beta A4 precurs 32.8 60 0.002 36.1 6.5 72 136-220 50-127 (162)
112 2dlw_A Docking protein 2, isof 32.5 55 0.0019 34.6 5.7 69 140-222 29-102 (113)
113 4ffb_C Protein STU2; tubulin f 31.7 3.1E+02 0.011 32.1 12.9 137 498-667 71-213 (278)
114 1h4r_A Merlin; FERM, neurofibr 31.6 51 0.0017 39.9 6.2 69 23-103 220-289 (314)
115 3qij_A Protein 4.1; cytoskelet 31.0 36 0.0012 41.2 4.7 71 23-104 206-277 (296)
116 2ysz_A Amyloid beta A4 precurs 30.2 1.2E+02 0.0041 34.7 8.4 93 104-220 32-128 (185)
117 2yt0_A Amyloid beta A4 protein 30.1 1.1E+02 0.0039 34.6 8.1 93 104-220 78-174 (176)
118 2f31_A Diaphanous protein homo 30.0 80 0.0028 36.8 7.3 86 1668-1756 42-127 (233)
119 2bnx_A Diaphanous protein homo 29.7 2.1E+02 0.0073 35.9 11.5 130 498-639 74-203 (386)
120 2dyq_A Amyloid beta A4 precurs 28.7 1E+02 0.0035 33.9 7.2 77 135-221 50-133 (144)
121 2of3_A ZYG-9; multifunctional 27.1 1.2E+02 0.0043 36.3 8.3 110 2066-2193 144-257 (266)
122 3au4_A Myosin-X; protein-prote 26.4 47 0.0016 43.6 5.0 66 37-115 467-532 (555)
123 3peg_A Neurofibromin; SEC14 do 23.8 37 0.0013 41.2 3.0 69 35-116 213-281 (290)
124 3u0r_A Apoptosis inhibitor 5; 23.7 1.9E+02 0.0067 37.5 9.4 95 2104-2230 55-160 (507)
125 3a58_A Exocyst complex compone 22.4 1.3E+02 0.0044 36.7 7.0 91 18-116 105-217 (320)
126 3pg7_A Neurofibromin; SEC lipi 21.5 42 0.0014 39.9 2.8 50 57-116 198-247 (256)
127 3dad_A FH1/FH2 domain-containi 21.4 6.9E+02 0.024 31.1 13.3 176 2026-2214 135-323 (339)
128 1xr0_B FGFR signalling adaptor 21.2 1.8E+02 0.0061 31.5 7.1 76 138-230 26-105 (129)
129 3ltj_A Alpharep-4; protein eng 20.7 6E+02 0.021 27.5 11.9 141 2054-2231 17-165 (201)
130 2ej8_A DCC-interacting protein 20.4 1.4E+02 0.0049 32.9 6.6 76 137-220 55-137 (160)
131 2bnx_A Diaphanous protein homo 20.2 1.6E+02 0.0056 36.9 7.9 85 1668-1755 46-130 (386)
No 1
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.16 E-value=1.9e-11 Score=118.59 Aligned_cols=66 Identities=36% Similarity=0.712 Sum_probs=58.4
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcc
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd~ 1581 (2592)
..+.|+||||++ +++.++||++||+|+++|||||+++..++|+.|++||++|+|+
T Consensus 7 ~~~~y~iLgl~~-------------------------~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~ 61 (73)
T 2och_A 7 ETGYYDVLGVKP-------------------------DASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61 (73)
T ss_dssp CCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSH
T ss_pred CCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCH
Confidence 357899999994 6799999999999999999999998889999999999999996
Q ss_pred ccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1582 ~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
. ++..||++|+
T Consensus 62 ~-----------------~R~~YD~~g~ 72 (73)
T 2och_A 62 K-----------------KRQIYDQGGE 72 (73)
T ss_dssp H-----------------HHHHHHHTC-
T ss_pred H-----------------HHHHHHhcCC
Confidence 4 5677888885
No 2
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.14 E-value=4.6e-11 Score=120.26 Aligned_cols=62 Identities=32% Similarity=0.509 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHH
Q 000052 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQ 1572 (2592)
Q Consensus 1497 ~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~ 1572 (2592)
|..++..++|+||||+. +++.++||++||+|+++||||||++ +.++|+.|+
T Consensus 10 ~~~~~~~~~y~vLgv~~-------------------------~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~ 64 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAW-------------------------KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQ 64 (88)
T ss_dssp CSSSCHHHHHHHHHHTT-------------------------SSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHH
Confidence 55667899999999984 6788999999999999999999997 578999999
Q ss_pred HHHHHhhcccc
Q 000052 1573 KAYERLQATMQ 1583 (2592)
Q Consensus 1573 ~AYevLsd~~~ 1583 (2592)
+||++|+|...
T Consensus 65 ~AYevL~~~~~ 75 (88)
T 1iur_A 65 NEINRLEKQAF 75 (88)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhcc
Confidence 99999999643
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4.6e-11 Score=117.55 Aligned_cols=70 Identities=34% Similarity=0.574 Sum_probs=60.4
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHH
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAY 1575 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AY 1575 (2592)
.++..++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay 57 (79)
T 2dn9_A 3 SGSSGDYYQILGVPR-------------------------NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAY 57 (79)
T ss_dssp SSCCSCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHH
Confidence 455678999999984 6799999999999999999999974 688999999999
Q ss_pred HHhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1576 ERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1576 evLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
++|+|+. ++..||.+|..
T Consensus 58 ~~L~d~~-----------------~R~~YD~~g~~ 75 (79)
T 2dn9_A 58 EVLSDEV-----------------KRKQYDAYGSG 75 (79)
T ss_dssp HHHHSHH-----------------HHHHHHHSCCC
T ss_pred HHHCCHH-----------------HHHHHHhccCc
Confidence 9999964 56778888864
No 4
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.09 E-value=5.4e-11 Score=120.58 Aligned_cols=57 Identities=39% Similarity=0.639 Sum_probs=52.5
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhc
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd 1580 (2592)
...++|+||||++ +++.++||++||+|+++|||||+++..++|+.|++||++|+|
T Consensus 6 ~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d 60 (92)
T 2o37_A 6 KETKLYDLLGVSP-------------------------SANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILND 60 (92)
T ss_dssp SCCHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCC
Confidence 4568999999984 679999999999999999999999888999999999999999
Q ss_pred cc
Q 000052 1581 TM 1582 (2592)
Q Consensus 1581 ~~ 1582 (2592)
+.
T Consensus 61 ~~ 62 (92)
T 2o37_A 61 PQ 62 (92)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.7e-11 Score=116.66 Aligned_cols=70 Identities=36% Similarity=0.565 Sum_probs=60.6
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHH
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYE 1576 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYe 1576 (2592)
.++..++|+||||++ +++.++||++||+|+++|||||++ +..++|+.|++||+
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~ 57 (78)
T 2ctp_A 3 SGSSGDYYEILGVSR-------------------------GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYA 57 (78)
T ss_dssp CSCSCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHH
Confidence 456678999999994 679999999999999999999996 47899999999999
Q ss_pred HhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1577 vLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+|+. ++..||++|..
T Consensus 58 ~L~d~~-----------------~R~~YD~~~~~ 74 (78)
T 2ctp_A 58 VLSNPE-----------------KRKQYDQFGSG 74 (78)
T ss_dssp HHTSHH-----------------HHHHHHHTCSC
T ss_pred HHCCHH-----------------HHHHHHHcCcc
Confidence 999964 56678888764
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=9.6e-11 Score=116.05 Aligned_cols=68 Identities=38% Similarity=0.686 Sum_probs=59.0
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYE 1576 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYe 1576 (2592)
...++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||+
T Consensus 7 ~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~ 61 (82)
T 2ej7_A 7 GMVDYYEVLDVPR-------------------------QASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61 (82)
T ss_dssp SSCCHHHHTTCCT-------------------------TCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 3467999999984 6799999999999999999999985 4679999999999
Q ss_pred HhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1577 vLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+|+. ++..||++|..
T Consensus 62 ~L~d~~-----------------~R~~YD~~g~~ 78 (82)
T 2ej7_A 62 VLSDAK-----------------KRDIYDRYGSG 78 (82)
T ss_dssp HHSSTT-----------------HHHHHHHTCCC
T ss_pred HHCCHH-----------------HHHHHHHcCcc
Confidence 999964 56778888864
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=117.56 Aligned_cols=70 Identities=34% Similarity=0.529 Sum_probs=59.7
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHHHH
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKAYE 1576 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~AYe 1576 (2592)
..+..++|+||||++ +++.++||++||+|+++|||||++. +.++|+.|++||+
T Consensus 3 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~ 57 (88)
T 2ctr_A 3 SGSSGSYYDILGVPK-------------------------SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYE 57 (88)
T ss_dssp SCCCCSHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHH
Confidence 345568999999994 6799999999999999999999975 6889999999999
Q ss_pred HhhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1577 RLQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1577 vLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+|+. ++..||+++..
T Consensus 58 ~L~d~~-----------------~R~~Yd~~~~~ 74 (88)
T 2ctr_A 58 TLSDAN-----------------RRKEYDTLGHS 74 (88)
T ss_dssp HHHSSH-----------------HHHHHHHTCHH
T ss_pred HHCCHH-----------------HHHHHHHhCcc
Confidence 999964 46678877753
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=1.2e-10 Score=117.15 Aligned_cols=68 Identities=31% Similarity=0.593 Sum_probs=59.0
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHh
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERL 1578 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevL 1578 (2592)
...++|+||||++ +++.++||++||+|+++|||||++ +..++|+.|++||++|
T Consensus 15 ~~~d~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L 69 (88)
T 2cug_A 15 LDFDPYRVLGVSR-------------------------TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEIL 69 (88)
T ss_dssp SSSCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHH
Confidence 3467999999984 679999999999999999999997 4789999999999999
Q ss_pred hccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1579 QATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1579 sd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+|+. ++..||++|+.
T Consensus 70 ~d~~-----------------~R~~YD~~g~~ 84 (88)
T 2cug_A 70 SNEE-----------------KRTNYDHYGSG 84 (88)
T ss_dssp HSHH-----------------HHHHHHHHTTC
T ss_pred CCHH-----------------HHHHHHHcCCC
Confidence 9964 46678888864
No 9
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=115.48 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=52.6
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLs 1579 (2592)
..++|+||||++ +++.++||++||+|+++|||||++ +..++|+.|++||++|+
T Consensus 26 ~~~~y~iLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~ 80 (90)
T 2ys8_A 26 SKDSWDMLGVKP-------------------------GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80 (90)
T ss_dssp CSSHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHC
Confidence 367999999984 679999999999999999999995 57899999999999999
Q ss_pred ccccCC
Q 000052 1580 ATMQGL 1585 (2592)
Q Consensus 1580 d~~~~~ 1585 (2592)
|+..+.
T Consensus 81 d~~~R~ 86 (90)
T 2ys8_A 81 KNIKSG 86 (90)
T ss_dssp HHHCCS
T ss_pred Cccccc
Confidence 986543
No 10
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.03 E-value=1.1e-10 Score=114.31 Aligned_cols=65 Identities=34% Similarity=0.673 Sum_probs=57.3
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCC--chHHHHHHHHHHHHHhhcc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNP--EGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp--~~~ekF~~I~~AYevLsd~ 1581 (2592)
+.|+||||++ +++.++||++||+|+++|||||++ ++.++|+.|++||++|+|+
T Consensus 4 ~~y~iLgv~~-------------------------~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~ 58 (77)
T 1hdj_A 4 DYYQTLGLAR-------------------------GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDP 58 (77)
T ss_dssp CSHHHHTCCT-------------------------TCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCH
Confidence 5799999984 679999999999999999999996 4789999999999999996
Q ss_pred ccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1582 ~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
. ++..||++|..
T Consensus 59 ~-----------------~R~~Yd~~~~~ 70 (77)
T 1hdj_A 59 R-----------------KREIFDRYGEE 70 (77)
T ss_dssp H-----------------HHHHHHHTCGG
T ss_pred H-----------------HHHHHHHHccc
Confidence 4 56778888864
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=1.5e-10 Score=120.94 Aligned_cols=72 Identities=36% Similarity=0.679 Sum_probs=60.9
Q ss_pred CCCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHH
Q 000052 1496 RPMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQ 1572 (2592)
Q Consensus 1496 ~~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~ 1572 (2592)
+....+..++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|+
T Consensus 10 r~~~~~~~~~Y~vLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~ 64 (109)
T 2ctw_A 10 RSLSTSGESLYHVLGLDK-------------------------NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEIN 64 (109)
T ss_dssp CCTTSCSCCHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHH
Confidence 344556678999999984 6799999999999999999999985 578999999
Q ss_pred HHHHHhhccccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1573 KAYERLQATMQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1573 ~AYevLsd~~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
+||++|+|+. ++..||.+|.
T Consensus 65 ~Ay~vL~d~~-----------------~R~~YD~~g~ 84 (109)
T 2ctw_A 65 NAHAILTDAT-----------------KRNIYDKYGS 84 (109)
T ss_dssp HHHHHHTCHH-----------------HHHHHHHTCH
T ss_pred HHHHHHcCHH-----------------HHHHHHHhcc
Confidence 9999999964 4566777774
No 12
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.6e-10 Score=117.10 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=53.8
Q ss_pred CCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHH
Q 000052 1498 MDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKA 1574 (2592)
Q Consensus 1498 ~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~A 1574 (2592)
..++..+.|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++|
T Consensus 12 ~~~~~~~~Y~vLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~A 66 (99)
T 2yua_A 12 CSYSRTALYDLLGVPS-------------------------TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQA 66 (99)
T ss_dssp CSSCSSHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHH
T ss_pred CCCCccCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHH
Confidence 4566789999999984 6799999999999999999999974 68899999999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|++|+|+.
T Consensus 67 y~~L~d~~ 74 (99)
T 2yua_A 67 YVVLGSAT 74 (99)
T ss_dssp HHHTTSHH
T ss_pred HHHHCCHH
Confidence 99999974
No 13
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=121.90 Aligned_cols=69 Identities=26% Similarity=0.351 Sum_probs=59.3
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
...+.|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||++
T Consensus 18 ~~~d~Y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~v 72 (112)
T 2ctq_A 18 DTEDYYTLLGCDE-------------------------LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEI 72 (112)
T ss_dssp CCCCHHHHTTCCT-------------------------TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 4568999999994 6799999999999999999999974 68999999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCcC
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDVL 1611 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~l 1611 (2592)
|+|+. ++..||+++...
T Consensus 73 L~d~~-----------------~R~~YD~~~~~~ 89 (112)
T 2ctq_A 73 LTNEE-----------------SRARYDHWRRSQ 89 (112)
T ss_dssp HHSHH-----------------HHHHHHHHHHHT
T ss_pred HCCHH-----------------HHHHHHHhhhhc
Confidence 99964 466788777543
No 14
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=4.3e-10 Score=108.82 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=53.3
Q ss_pred CCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHH
Q 000052 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYE 1576 (2592)
Q Consensus 1497 ~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYe 1576 (2592)
...|+.+++|+||||++ .+++.++||++||+|+++|||||++ ..++|++|++||+
T Consensus 8 ~~~m~~~~~y~iLgl~~------------------------~~a~~~eIk~ayr~l~~~~HPDk~g-~~~~f~~i~~Aye 62 (71)
T 2guz_A 8 DPKMNSKEALQILNLTE------------------------NTLTKKKLKEVHRKIMLANHPDKGG-SPFLATKINEAKD 62 (71)
T ss_dssp CSSCCHHHHHHHTTCCT------------------------TTCCHHHHHHHHHHHHHHHCGGGTC-CHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCC------------------------CCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHH
Confidence 34588999999999984 1478999999999999999999975 4789999999999
Q ss_pred Hhhccc
Q 000052 1577 RLQATM 1582 (2592)
Q Consensus 1577 vLsd~~ 1582 (2592)
+|+++.
T Consensus 63 ~L~~~~ 68 (71)
T 2guz_A 63 FLEKRG 68 (71)
T ss_dssp HHHHHC
T ss_pred HHhhhh
Confidence 999853
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.2e-10 Score=114.75 Aligned_cols=67 Identities=37% Similarity=0.634 Sum_probs=57.7
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHH
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYER 1577 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYev 1577 (2592)
..++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||++
T Consensus 8 ~~~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~ 62 (92)
T 2dmx_A 8 MANYYEVLGVQA-------------------------SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEV 62 (92)
T ss_dssp CCCHHHHHTCCT-------------------------TCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 457999999994 5688899999999999999999985 57899999999999
Q ss_pred hhccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1578 LQATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1578 Lsd~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+|+. ++..||+++..
T Consensus 63 L~d~~-----------------~R~~Yd~~~~~ 78 (92)
T 2dmx_A 63 LSDSK-----------------KRSLYDRAGCD 78 (92)
T ss_dssp HHSHH-----------------HHHHHHHHCSC
T ss_pred HCCHH-----------------HHHHHHHhCcc
Confidence 99964 46678888754
No 16
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.96 E-value=4.4e-10 Score=111.02 Aligned_cols=57 Identities=14% Similarity=0.307 Sum_probs=50.1
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcc
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd~ 1581 (2592)
..++|+||||+++ ..++..+||++||+|+++|||||+++ .++|++|++||++|+|+
T Consensus 10 ~~~~y~iLgl~~~-----------------------~~a~~~eIk~aYr~la~~~HPDk~~~-~~~f~~i~~AYe~L~~~ 65 (79)
T 1faf_A 10 KERLLELLKLPRQ-----------------------LWGDFGRMQQAYKQQSLLLHPDKGGS-HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHTCCSS-----------------------STTCHHHHHHHHHHHHHHSSGGGSCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHHhhH
Confidence 4689999999952 12789999999999999999999875 78999999999999996
Q ss_pred c
Q 000052 1582 M 1582 (2592)
Q Consensus 1582 ~ 1582 (2592)
.
T Consensus 66 ~ 66 (79)
T 1faf_A 66 V 66 (79)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=2.7e-10 Score=117.02 Aligned_cols=65 Identities=35% Similarity=0.694 Sum_probs=56.2
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc----hHHHHHHHHHHHHHhh
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE----GREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~----~~ekF~~I~~AYevLs 1579 (2592)
+.|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||++|+
T Consensus 3 d~Y~iLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~ 57 (99)
T 2lgw_A 3 SYYEILDVPR-------------------------SASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLS 57 (99)
T ss_dssp CHHHHSSSCT-------------------------TSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 5799999994 6789999999999999999999986 5689999999999999
Q ss_pred ccccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1580 ATMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1580 d~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
|+. ++..||.+|..
T Consensus 58 d~~-----------------~R~~YD~~g~~ 71 (99)
T 2lgw_A 58 DKH-----------------KREIYDRYGRE 71 (99)
T ss_dssp SHH-----------------HHHHHHHHHHC
T ss_pred CHH-----------------HHHHHHHhCcc
Confidence 964 46667777643
No 18
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=98.94 E-value=3.1e-10 Score=119.39 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=49.1
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCH--HHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDE--EKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e--~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLs 1579 (2592)
..++|+||||++ +++. .+||+|||+|+++|||||+++ .++|++|++||++|+
T Consensus 7 ~~~~Y~iLgv~~-------------------------~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~ 60 (114)
T 1gh6_A 7 SLQLMDLLGLER-------------------------SAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKME 60 (114)
T ss_dssp HHHHHHHTTCCT-------------------------TSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHH
T ss_pred hhhHHHHcCCCC-------------------------CCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHC
Confidence 357999999995 4455 899999999999999999987 789999999999999
Q ss_pred ccc
Q 000052 1580 ATM 1582 (2592)
Q Consensus 1580 d~~ 1582 (2592)
|+.
T Consensus 61 d~~ 63 (114)
T 1gh6_A 61 DGV 63 (114)
T ss_dssp HHH
T ss_pred CHH
Confidence 975
No 19
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=98.94 E-value=2.6e-10 Score=115.67 Aligned_cols=59 Identities=27% Similarity=0.473 Sum_probs=52.3
Q ss_pred CCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---------hHHHHH
Q 000052 1499 DLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---------GREKFL 1569 (2592)
Q Consensus 1499 ~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---------~~ekF~ 1569 (2592)
.+...++|+||||++ +++.++||++||+|+++|||||++. ..++|+
T Consensus 12 ~~~~~~~y~iLgv~~-------------------------~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~ 66 (94)
T 1wjz_A 12 QTLKKDWYSILGADP-------------------------SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFI 66 (94)
T ss_dssp SSSCSCHHHHTTCCT-------------------------TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCChHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHH
Confidence 355678999999984 6799999999999999999999862 578999
Q ss_pred HHHHHHHHhhccc
Q 000052 1570 AVQKAYERLQATM 1582 (2592)
Q Consensus 1570 ~I~~AYevLsd~~ 1582 (2592)
.|++||++|+|+.
T Consensus 67 ~i~~Ay~~L~d~~ 79 (94)
T 1wjz_A 67 EIDQAWKILGNEE 79 (94)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHHCCHH
Confidence 9999999999974
No 20
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=98.89 E-value=2.7e-10 Score=115.39 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHHHhhc
Q 000052 1538 ENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1538 ~~~~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~AYevLsd 1580 (2592)
+.+++.+|||||||+|++|||||||+ +.++|+.|++||++|.+
T Consensus 43 ~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 43 DLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp GSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999985 56799999999999986
No 21
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.88 E-value=2.8e-10 Score=117.56 Aligned_cols=65 Identities=35% Similarity=0.707 Sum_probs=56.3
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLsd 1580 (2592)
++|+||||++ +++.++||++||+|+++|||||+++ +.++|+.|++||++|+|
T Consensus 4 ~~y~iLgv~~-------------------------~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d 58 (103)
T 1bq0_A 4 DYYEILGVSK-------------------------TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD 58 (103)
T ss_dssp CSTTTTSSCS-------------------------SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTC
T ss_pred CHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 5799999984 6799999999999999999999874 67899999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||+++..
T Consensus 59 ~~-----------------~R~~YD~~~~~ 71 (103)
T 1bq0_A 59 SQ-----------------KRAAYDQYGHA 71 (103)
T ss_dssp SH-----------------HHHHTTTSTTT
T ss_pred HH-----------------HHHHHHHHhhh
Confidence 74 45668877754
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=98.85 E-value=8e-10 Score=115.25 Aligned_cols=56 Identities=36% Similarity=0.587 Sum_probs=50.4
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCC-CHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHH
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENI-DEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKA 1574 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~A 1574 (2592)
..++|+||||++ ++ +.++||++||+|+++|||||+++ +.++|+.|++|
T Consensus 14 ~~~~y~iLgv~~-------------------------~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~A 68 (109)
T 2qsa_A 14 LENCYDVLEVNR-------------------------EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATA 68 (109)
T ss_dssp TSCHHHHTTCCG-------------------------GGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCC-------------------------CCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHH
Confidence 467999999995 56 89999999999999999999975 67899999999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|++|+|+.
T Consensus 69 Y~~L~d~~ 76 (109)
T 2qsa_A 69 YETLKDDE 76 (109)
T ss_dssp HHHHHSHH
T ss_pred HHHHCCHH
Confidence 99999974
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=98.84 E-value=5e-10 Score=125.26 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=53.9
Q ss_pred hHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhcc
Q 000052 1502 EEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1502 ~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd~ 1581 (2592)
..++|++|||+++. ..+.++||+|||+||++||||||++ .++|++|++||++|+|+
T Consensus 10 ~~d~Y~vLGl~~~a-----------------------s~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp 65 (174)
T 2pf4_E 10 SLQLMDLLGLERSA-----------------------WGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDG 65 (174)
T ss_dssp HHHHHHTTTCCGGG-----------------------TTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCCC-----------------------CcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCH
Confidence 46899999999521 2236999999999999999999987 68999999999999996
Q ss_pred ccCCCCCChhhHhhhhhcccccccccCC
Q 000052 1582 MQGLQGPQPWRLLLLLKGQCILYRRYGD 1609 (2592)
Q Consensus 1582 ~~~~~gp~~~~~~liLr~q~~lydr~g~ 1609 (2592)
. ++..||+||+
T Consensus 66 ~-----------------kR~~YD~~G~ 76 (174)
T 2pf4_E 66 V-----------------KYAHQPDFGG 76 (174)
T ss_dssp H-----------------HHHTSCGGGG
T ss_pred H-----------------HHHHHhccCC
Confidence 4 5677888885
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.82 E-value=1.6e-09 Score=123.80 Aligned_cols=65 Identities=32% Similarity=0.630 Sum_probs=57.2
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHHhhc
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYERLQA 1580 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYevLsd 1580 (2592)
+.|+||||++ +++.++||+|||+|+++||||||++ +.++|+.|++||++|+|
T Consensus 3 ~~y~~l~~~~-------------------------~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~ 57 (210)
T 3apq_A 3 NFYSLLGVSK-------------------------TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 57 (210)
T ss_dssp CHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS
T ss_pred CHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC
Confidence 5899999994 6799999999999999999999974 78899999999999999
Q ss_pred cccCCCCCChhhHhhhhhcccccccccCCc
Q 000052 1581 TMQGLQGPQPWRLLLLLKGQCILYRRYGDV 1610 (2592)
Q Consensus 1581 ~~~~~~gp~~~~~~liLr~q~~lydr~g~~ 1610 (2592)
+. ++..||++|+.
T Consensus 58 ~~-----------------~r~~yd~~~~~ 70 (210)
T 3apq_A 58 ED-----------------LRKKYDKYGEK 70 (210)
T ss_dssp HH-----------------HHHHHHHHTTT
T ss_pred HH-----------------HHHHHHHhccc
Confidence 64 56678888864
No 25
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=3.2e-09 Score=117.19 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=54.2
Q ss_pred CChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCch---------HHHHHH
Q 000052 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEG---------REKFLA 1570 (2592)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~---------~ekF~~ 1570 (2592)
+...+.|+||||++ +++.++||++||+|+++|||||++.. .++|+.
T Consensus 7 ~~~~~~y~iLgv~~-------------------------~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~ 61 (155)
T 2l6l_A 7 MPKKDWYSILGADP-------------------------SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIE 61 (155)
T ss_dssp CCCSHHHHHHTCCT-------------------------TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHH
T ss_pred CCCCChhHhcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHH
Confidence 45578999999994 67899999999999999999999752 489999
Q ss_pred HHHHHHHhhccccCCCCC
Q 000052 1571 VQKAYERLQATMQGLQGP 1588 (2592)
Q Consensus 1571 I~~AYevLsd~~~~~~gp 1588 (2592)
|++||++|+||..|..|+
T Consensus 62 i~~Ay~~L~dp~~R~~Yd 79 (155)
T 2l6l_A 62 IDQAWKILGNEETKREYD 79 (155)
T ss_dssp HHHHHHHSSSHHHHCHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999999986444333
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.75 E-value=9.7e-10 Score=134.67 Aligned_cols=67 Identities=28% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--hHHHHHHHHHH
Q 000052 1497 PMDLSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--GREKFLAVQKA 1574 (2592)
Q Consensus 1497 ~~~~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--~~ekF~~I~~A 1574 (2592)
...|+..++|++|||++ +++.++||+|||+||++||||||++ +.++|++|++|
T Consensus 22 ~~~m~~~d~Y~vLgv~~-------------------------~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~A 76 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQP-------------------------TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEA 76 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCC-------------------------CCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHH
Confidence 34466789999999984 6788999999999999999999874 68899999999
Q ss_pred HHHhhccccCCCCC
Q 000052 1575 YERLQATMQGLQGP 1588 (2592)
Q Consensus 1575 YevLsd~~~~~~gp 1588 (2592)
|++|+|+..|..|+
T Consensus 77 y~vL~d~~~R~~YD 90 (329)
T 3lz8_A 77 WEVLKDEQRRAEYD 90 (329)
T ss_dssp --------------
T ss_pred HHHhhhhhhhcccc
Confidence 99999986444333
No 27
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.75 E-value=1.4e-09 Score=113.10 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc----------hHHHHHHHHHHHHHhhcc
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNPE----------GREKFLAVQKAYERLQAT 1581 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp~----------~~ekF~~I~~AYevLsd~ 1581 (2592)
.++..+|||||||||++||||||++ +.++|+.|++||++|+|+
T Consensus 51 ~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~ 103 (106)
T 3ag7_A 51 MIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCc
Confidence 4789999999999999999999873 378999999999999996
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.65 E-value=4.8e-09 Score=118.13 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=50.9
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYE 1576 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~AYe 1576 (2592)
++.|++|||+. .++..+||++||+|+++|||||+++ +.++|+.|++||+
T Consensus 117 ~d~Y~vLgv~~-------------------------~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYe 171 (182)
T 1n4c_A 117 ETKWKPVGMAD-------------------------LVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 171 (182)
T ss_dssp CCCCCCCCGGG-------------------------GSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHH
Confidence 56899999984 6799999999999999999999975 4679999999999
Q ss_pred HhhccccCC
Q 000052 1577 RLQATMQGL 1585 (2592)
Q Consensus 1577 vLsd~~~~~ 1585 (2592)
+|+|+..|.
T Consensus 172 vLsD~~kR~ 180 (182)
T 1n4c_A 172 EFENQGQKP 180 (182)
T ss_dssp HHHHHHSSC
T ss_pred HHCCHHhhh
Confidence 999976443
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.61 E-value=6.4e-06 Score=102.50 Aligned_cols=345 Identities=12% Similarity=0.118 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHh--hCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHH
Q 000052 2026 LQFGLTSLQNILT--SNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLL 2102 (2592)
Q Consensus 2026 l~maL~AL~nLL~--~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll 2102 (2592)
...++.+|+.++. .+|.....+...+-++.|.++|... +++.++..+..+|..++. +.+....+...+ ++..|+
T Consensus 37 r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~ 113 (450)
T 2jdq_A 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTNIASGNSLQTRIVIQAG-AVPIFI 113 (450)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC-CHHHHH
Confidence 3578899999886 5666544333336778888888753 256799999999999886 456666666544 788888
Q ss_pred HHHhh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000052 2103 QMLHY-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2592)
Q Consensus 2103 ~lL~~-~p~~~~~vL~~L~aL~S~~-~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~ 2180 (2592)
.+|.+ .++.+..++.+|..++... +.....+..|++..|+.++.++ .+..+|..++..|+.+..+.-..++...
T Consensus 114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 189 (450)
T 2jdq_A 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ---NRLTMTRNAVWALSNLCRGKSPPPEFAK- 189 (450)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHHHCCSSSCCCGGG-
T ss_pred HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHH-
Confidence 88875 4566778999999998754 5666677889999999999742 3689999999999999976421121111
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccC
Q 000052 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2592)
Q Consensus 2181 LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~ 2260 (2592)
...++| .++..++++ +.+.|......+..++.. . ++..
T Consensus 190 ~~~~l~-~L~~~l~~~--------------------~~~v~~~a~~~L~~l~~~--------~------~~~~------- 227 (450)
T 2jdq_A 190 VSPCLN-VLSWLLFVS--------------------DTDVLADACWALSYLSDG--------P------NDKI------- 227 (450)
T ss_dssp TGGGHH-HHHHHTTCC--------------------CHHHHHHHHHHHHHHTSS--------S------HHHH-------
T ss_pred HHHHHH-HHHHHHccC--------------------CHHHHHHHHHHHHHHHCC--------C------cHHH-------
Confidence 123332 223333321 234555655555554321 0 0000
Q ss_pred CCcEEeeeeehhhccCCCCCCCCchHHH-HHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCC
Q 000052 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFL-EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLG 2339 (2592)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~Pk~FL-~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG 2339 (2592)
+.+. .+++..++..+... |.++..-...++..|....+...+.+...|
T Consensus 228 ------------------------~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 276 (450)
T 2jdq_A 228 ------------------------QAVIDAGVCRRLVELLMHN-------DYKVVSPALRAVGNIVTGDDIQTQVILNCS 276 (450)
T ss_dssp ------------------------HHHHHTTTHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred ------------------------HHHHHcCcHHHHHHHHCCC-------chhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence 0110 12445555555421 234444556667777777777667777789
Q ss_pred ChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCC
Q 000052 2340 YVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGT 2418 (2592)
Q Consensus 2340 ~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~ 2418 (2592)
.+|.|+.+|.+.+ ..+++.++..|..|+. +....+.+.+.
T Consensus 277 ~l~~L~~ll~~~~-----------------------------------~~vr~~a~~~L~~l~~~~~~~~~~~~~~---- 317 (450)
T 2jdq_A 277 ALQSLLHLLSSPK-----------------------------------ESIKKEACWTISNITAGNRAQIQTVIDA---- 317 (450)
T ss_dssp HHHHHHHHTTCSS-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT----
T ss_pred cHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHC----
Confidence 9999999876421 2578999999999995 66677766653
Q ss_pred CcchHHHHHHhcccCc-h-HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhh
Q 000052 2419 PQVVPILMKAIGWQGG-S-ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASI 2496 (2592)
Q Consensus 2419 p~~~~~l~~~m~~~~~-~-~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~ 2496 (2592)
.++|.|+..+..... . ..||.+|..+...+ .+..+...++.|+++.|+.+|+.. + .-
T Consensus 318 -~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~l~~~~~i~~L~~ll~~~----------------~-~~ 376 (450)
T 2jdq_A 318 -NIFPALISILQTAEFRTRKEAAWAITNATSGG---SAEQIKYLVELGCIKPLCDLLTVM----------------D-SK 376 (450)
T ss_dssp -THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHTCHHHHHHGGGSS----------------C-HH
T ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHhcCC----------------C-HH
Confidence 348888888876433 2 37889998887632 234555666889999999999632 1 12
Q ss_pred hHHHHHHHHHHHHh
Q 000052 2497 GRVLAIEVLHAFAA 2510 (2592)
Q Consensus 2497 ~ra~~V~~Lkam~~ 2510 (2592)
.|..++.+|..+..
T Consensus 377 v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 377 IVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46667778887776
No 30
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.57 E-value=1.6e-08 Score=113.46 Aligned_cols=56 Identities=18% Similarity=0.431 Sum_probs=48.2
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AY 1575 (2592)
+.|++|||+++ ..+|..+||++||+|+++|||||+++ +.++|+.|++||
T Consensus 2 d~y~lLgl~~~-----------------------a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 58 (171)
T 1fpo_A 2 DYFTLFGLPAR-----------------------YQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAW 58 (171)
T ss_dssp HHHHHTTCCSS-----------------------SCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCCCC-----------------------CCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999952 13499999999999999999999985 236899999999
Q ss_pred HHhhccc
Q 000052 1576 ERLQATM 1582 (2592)
Q Consensus 1576 evLsd~~ 1582 (2592)
++|+||.
T Consensus 59 ~vL~dp~ 65 (171)
T 1fpo_A 59 QTLRHPL 65 (171)
T ss_dssp HHHHSHH
T ss_pred HHHcCch
Confidence 9999974
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.56 E-value=1.6e-08 Score=113.86 Aligned_cols=56 Identities=20% Similarity=0.455 Sum_probs=48.5
Q ss_pred HHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHHH
Q 000052 1504 EACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKAY 1575 (2592)
Q Consensus 1504 ~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~AY 1575 (2592)
+.|+||||+++ -.+|..+||++||+|+++|||||+++ +.++|+.|++||
T Consensus 5 d~Y~iLgl~~~-----------------------a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY 61 (174)
T 3hho_A 5 NYFELFGLPIQ-----------------------FELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61 (174)
T ss_dssp CHHHHTTCCSS-----------------------SCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCcCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 58999999962 14569999999999999999999974 347999999999
Q ss_pred HHhhccc
Q 000052 1576 ERLQATM 1582 (2592)
Q Consensus 1576 evLsd~~ 1582 (2592)
++|+||.
T Consensus 62 ~vL~dp~ 68 (174)
T 3hho_A 62 QTLKDPL 68 (174)
T ss_dssp HHHHSHH
T ss_pred HHHcChH
Confidence 9999975
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.55 E-value=2.2e-08 Score=115.39 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=49.1
Q ss_pred HHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc--------hHHHHHHHHHH
Q 000052 1503 EEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE--------GREKFLAVQKA 1574 (2592)
Q Consensus 1503 ~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~--------~~ekF~~I~~A 1574 (2592)
.+.|++|||+++ -++|..+||++||+|+++|||||+++ +.++|+.|++|
T Consensus 43 ~d~y~lLgv~~~-----------------------~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~A 99 (207)
T 3bvo_A 43 RDYFSLMDCNRS-----------------------FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDA 99 (207)
T ss_dssp CCHHHHTTSCSC-----------------------SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCC-----------------------CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999952 14789999999999999999999974 34689999999
Q ss_pred HHHhhccc
Q 000052 1575 YERLQATM 1582 (2592)
Q Consensus 1575 YevLsd~~ 1582 (2592)
|++|+||.
T Consensus 100 Y~vLsdp~ 107 (207)
T 3bvo_A 100 YKTLLAPL 107 (207)
T ss_dssp HHHHHSHH
T ss_pred HHHHCCHH
Confidence 99999975
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.43 E-value=4.9e-05 Score=97.89 Aligned_cols=326 Identities=13% Similarity=0.125 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHhh--CccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHH
Q 000052 2026 LQFGLTSLQNILTS--NPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLL 2102 (2592)
Q Consensus 2026 l~maL~AL~nLL~~--nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll 2102 (2592)
...++.+|.+++.. +|... .+...+-++.|+++|... +++.++..|+.+|..++. +..+...+...+ ++..|+
T Consensus 104 ~~~A~~~L~~ll~~~~~~~~~-~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv 179 (530)
T 1wa5_B 104 QLSATVKFRQILSREHRPPID-VVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNIASGTSAQTKVVVDAD-AVPLFI 179 (530)
T ss_dssp HHHHHHHHHHHTCCSSSCSHH-HHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHH-HHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC-CHHHHH
Confidence 35688899999876 44432 234567788899998753 256799999999999886 456777776644 778888
Q ss_pred HHHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000052 2103 QMLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2592)
Q Consensus 2103 ~lL~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~ 2180 (2592)
.+|.+ .++.+..++.+|..++.. ++.....+..|++..|+.+|.+ .+..+|..++..|+.+..+.- |.....
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~--~~~~~~ 253 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKK--PQPDWS 253 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSS--SCCCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCC--CCCcHH
Confidence 88875 456677899999999875 5677777889999999999975 367899999999999987631 222121
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccC
Q 000052 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2592)
Q Consensus 2181 LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~ 2260 (2592)
...-+-+.++ .++.+ + +.+.|......|..++.. . |+..
T Consensus 254 ~~~~~l~~L~------------~lL~~--~------d~~v~~~a~~~L~~L~~~--------~------~~~~------- 292 (530)
T 1wa5_B 254 VVSQALPTLA------------KLIYS--M------DTETLVDACWAISYLSDG--------P------QEAI------- 292 (530)
T ss_dssp HHGGGHHHHH------------HHTTC--C------CHHHHHHHHHHHHHHHSS--------C------HHHH-------
T ss_pred HHHhHHHHHH------------HHHcC--C------CHHHHHHHHHHHHHHhCC--------C------HHHH-------
Confidence 2222222233 33321 1 245566666666665431 0 0000
Q ss_pred CCcEEeeeeehhhccCCCCCCCCchHHHH-HHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCC
Q 000052 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLE-GLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLG 2339 (2592)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~Pk~FL~-~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG 2339 (2592)
+.++. +++..+++.+... |.++..-...++..|....+.....+-..|
T Consensus 293 ------------------------~~~~~~~~v~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 293 ------------------------QAVIDVRIPKRLVELLSHE-------STLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp ------------------------HHHHHTTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred ------------------------HHHHhcCcHHHHHHHHCCC-------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 00111 2334444444321 222333344555555555666666666779
Q ss_pred ChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCC
Q 000052 2340 YVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGT 2418 (2592)
Q Consensus 2340 ~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~ 2418 (2592)
.+|.|+..|.+.+ ..+++.|+..|..|+. +..+++.+....
T Consensus 342 ~l~~L~~lL~~~~-----------------------------------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--- 383 (530)
T 1wa5_B 342 VLPALRLLLSSPK-----------------------------------ENIKKEACWTISNITAGNTEQIQAVIDAN--- 383 (530)
T ss_dssp HHHHHHHHTTCSC-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT---
T ss_pred hHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCC---
Confidence 9999999886421 2578899999999985 666777776543
Q ss_pred CcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhh
Q 000052 2419 PQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLD 2474 (2592)
Q Consensus 2419 p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~ 2474 (2592)
++|.|+..+...... ..||.+|..+...+.. .+..+...++.|.++.|+.+|+
T Consensus 384 --~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~ 438 (530)
T 1wa5_B 384 --LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLE 438 (530)
T ss_dssp --CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTT
T ss_pred --CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHh
Confidence 488888888764332 3788999988764321 0144555667899999999996
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.42 E-value=6.5e-05 Score=96.52 Aligned_cols=346 Identities=11% Similarity=0.096 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHhhCc-cchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCC-hhHHHHHHhhchhHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNP-NLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQ 2103 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP-~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaIA~~~~vl~~Ll~ 2103 (2592)
...++.+|++++...+ .-...+...+-++.|.++|... +++.++..|+.+|..++.. .++...+...+ ++..|+.
T Consensus 91 ~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ 167 (528)
T 4b8j_A 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALTNIASGTSENTKVVIDHG-AVPIFVK 167 (528)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC-cHHHHHH
Confidence 3467889999988765 3333455567888899998753 2367899999999988874 77777777654 7888888
Q ss_pred HHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000052 2104 MLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2592)
Q Consensus 2104 lL~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~L 2181 (2592)
+|.. .++.+..++.+|..++.. +......+..|++..|+.+|... .+..+|..++..|..+..+. ..++. ...
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~---~~~~v~~~a~~~L~~L~~~~-~~~~~-~~~ 242 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH---TKLSMLRNATWTLSNFCRGK-PQPSF-EQT 242 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT---CCHHHHHHHHHHHHHHHCSS-SCCCH-HHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCC-CCCcH-HHH
Confidence 8875 456667788999998864 55667777889999999999543 36889999999999999875 12221 112
Q ss_pred HhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCC
Q 000052 2182 ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2592)
Q Consensus 2182 sKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~ 2261 (2592)
...+ ...+.++.+ . +.+.+......+..++.. ++... ..
T Consensus 243 ~~~l-------------~~L~~lL~~--~------~~~v~~~a~~aL~~l~~~---------------~~~~~--~~--- 281 (528)
T 4b8j_A 243 RPAL-------------PALARLIHS--N------DEEVLTDACWALSYLSDG---------------TNDKI--QA--- 281 (528)
T ss_dssp TTHH-------------HHHHHHTTC--C------CHHHHHHHHHHHHHHTSS---------------CHHHH--HH---
T ss_pred HHHH-------------HHHHHHHCC--C------CHHHHHHHHHHHHHHHcC---------------CHHHH--HH---
Confidence 2222 123344422 1 344555555555544321 01000 00
Q ss_pred CcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000052 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2592)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~ 2341 (2592)
+ +-.+++..++..+..+ +.++..-...++..|....+.....+-..|-+
T Consensus 282 -----------~-------------~~~g~v~~Lv~lL~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l 330 (528)
T 4b8j_A 282 -----------V-------------IEAGVCPRLVELLLHP-------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQAL 330 (528)
T ss_dssp -----------H-------------HHTTCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred -----------H-------------HHcCHHHHHHHHHcCC-------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhH
Confidence 0 0113555666666543 12333444555666666667777777788999
Q ss_pred HHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCc
Q 000052 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQ 2420 (2592)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p~ 2420 (2592)
|.|+.+|.+..+ ..+++.|..+|..|+. +..++..+...+.
T Consensus 331 ~~L~~lL~~~~~----------------------------------~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~---- 372 (528)
T 4b8j_A 331 PCLLSLLTQNLK----------------------------------KSIKKEACWTISNITAGNKDQIQAVINAGI---- 372 (528)
T ss_dssp HHHHHHHHSCCC----------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTC----
T ss_pred HHHHHHHcCCCc----------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHCCC----
Confidence 999999874311 2477889999998885 6667777776544
Q ss_pred chHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhH
Q 000052 2421 VVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGR 2498 (2592)
Q Consensus 2421 ~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~r 2498 (2592)
+|.|+..+...... ..|+.+|..+...+ .+.....-++.|.++.|+.+|+.. +. -.+
T Consensus 373 -i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~~~i~~L~~lL~~~----------------d~-~v~ 431 (528)
T 4b8j_A 373 -IGPLVNLLQTAEFDIKKEAAWAISNATSGG---SHDQIKYLVSEGCIKPLCDLLICP----------------DI-RIV 431 (528)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGGCS----------------CH-HHH
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCCCHHHHHHHHcCC----------------CH-HHH
Confidence 88888888765332 37888998887643 234555666889999999999632 11 235
Q ss_pred HHHHHHHHHHHh
Q 000052 2499 VLAIEVLHAFAA 2510 (2592)
Q Consensus 2499 a~~V~~Lkam~~ 2510 (2592)
..++.+|..|..
T Consensus 432 ~~al~~L~~l~~ 443 (528)
T 4b8j_A 432 TVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566777777765
No 35
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.41 E-value=2.2e-08 Score=113.25 Aligned_cols=44 Identities=32% Similarity=0.675 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhhccc
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQATM 1582 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLsd~~ 1582 (2592)
++|..+||++||+|+++|||||++++.++|+.|++||++|+||.
T Consensus 29 ~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~ 72 (181)
T 3uo3_A 29 TIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPL 72 (181)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHH
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChH
Confidence 78999999999999999999999988899999999999999975
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.34 E-value=0.00028 Score=95.90 Aligned_cols=509 Identities=17% Similarity=0.093 Sum_probs=281.6
Q ss_pred HhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHH
Q 000052 1667 RDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAAL 1746 (2592)
Q Consensus 1667 re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aAL 1746 (2592)
..|+++.|..++.. . ...|-.+++.++..++....++..+...++++..+++.|.-...+.++..|+
T Consensus 148 ~~g~ip~Lv~lL~~-----------~--d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa 214 (780)
T 2z6g_A 148 ATRAIPELTKLLND-----------E--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214 (780)
T ss_dssp HHHHHHHHHHHHHC-----------S--CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhCCHHHHHHHHCC-----------C--CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHH
Confidence 36777777776651 1 2345557788888888888888888888888888888886555678999999
Q ss_pred HHHHHHhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHHHHHHHHHHHHHHHhhCcCCCCCCCC
Q 000052 1747 QTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAKNMHAVRAAQALSRLSGLCSNGISIP 1826 (2592)
Q Consensus 1747 e~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivkn~lAk~Al~aL~rL~g~~~d~~~~P 1826 (2592)
.++..++.+.+.+..+.+.|++-.|+.+|-..+ ... -..|+.+|..|.... +
T Consensus 215 ~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~-----------------~~v-----~~~A~~aL~nLa~~~------~ 266 (780)
T 2z6g_A 215 GTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV-----------------DSV-----LFHAITTLHNLLLHQ------E 266 (780)
T ss_dssp HHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSC-----------------HHH-----HHHHHHHHHHHHHHS------T
T ss_pred HHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCC-----------------HHH-----HHHHHHHHHHHhCCC------h
Confidence 999999999999999999999988888874311 111 223556666664311 1
Q ss_pred ccHHHHHHH-HHhccHHHHHHhhcCChHHHHHHhhccCcCcccccchhHHHHHHHHHHHHHhccCCCCCcccCCcccccc
Q 000052 1827 YNEAAASAL-RALLTPKLASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKFVDQQRASQSPDGSYDLKDSNGFLY 1905 (2592)
Q Consensus 1827 ~n~~v~~~L-~klLtP~l~~~L~d~~p~~~L~~LnSn~EnPeLIWnn~tRaEL~e~L~~q~~~~~~~~~w~l~~~~~F~Y 1905 (2592)
. .+..+ ..=.-|.++..|.+.+ ...|....+.+.... ..+++ ..
T Consensus 267 ~---~~~~v~~~g~v~~Lv~lL~~~~--------------------~~v~~~a~~aL~~La-~~~~e----------~~- 311 (780)
T 2z6g_A 267 G---AKMAVRLAGGLQKMVALLNKTN--------------------VKFLAITTDCLQILA-YGNQE----------SK- 311 (780)
T ss_dssp T---HHHHHHHTTHHHHHHHGGGCCC--------------------HHHHHHHHHHHHHHH-TTCHH----------HH-
T ss_pred h---hHHHHHHcCCHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHh-cCChH----------HH-
Confidence 1 12222 1122244555554432 223333333332111 00000 00
Q ss_pred ccccCCcEEeeEEEEeeccCCCCCCCChHHHHHHHHHHHHHHhhcccCCCCcccccccccccchhhhhccccCCCCCCcc
Q 000052 1906 EALSKELYVGNVYLRVYNDQPDFEITEPEAFCVALIDFISYLVHNQSATKSDVQGEESLDGLSSKIVQDKLSLDPSSSKT 1985 (2592)
Q Consensus 1906 s~l~~ELvVGGVYLRlyneqP~~~Lr~Pk~Fl~~LLdfl~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1985 (2592)
.++. +. ..+..|+..+ ....
T Consensus 312 ----~~i~------------------~~-~~i~~Lv~lL----~~~~--------------------------------- 331 (780)
T 2z6g_A 312 ----LIIL------------------AS-GGPQALVNIM----RTYT--------------------------------- 331 (780)
T ss_dssp ----HHHH------------------TT-THHHHHHHHH----TTCC---------------------------------
T ss_pred ----HHHH------------------Hc-CCHHHHHHHH----hcCC---------------------------------
Confidence 0000 00 0112222221 1000
Q ss_pred ccCCCCcccCccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHhhCccchhhccccccccccccccccCCC
Q 000052 1986 FELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFA 2065 (2592)
Q Consensus 1986 ~e~~~~~~~~~~~~~~l~~~s~~~s~~~~~~~ed~e~l~~l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~ 2065 (2592)
+... ...+..+|.++-. ++.....+...+-++.|..+|...
T Consensus 332 ---------------------------------~~~~---~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~-- 372 (780)
T 2z6g_A 332 ---------------------------------YEKL---LWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP-- 372 (780)
T ss_dssp ---------------------------------CHHH---HHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS--
T ss_pred ---------------------------------HHHH---HHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC--
Confidence 0001 1234455555543 444444555556677788887643
Q ss_pred CCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHH
Q 000052 2066 PDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILE 2143 (2592)
Q Consensus 2066 ~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~ 2143 (2592)
+..+...|+.+|..++.+...... ...++..|+.+|+. .++.+..+..+|..|+.. ++..+..++.||+..|++
T Consensus 373 -~~~~~~~a~~~L~~L~~~~~~~~~---~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 448 (780)
T 2z6g_A 373 -SQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448 (780)
T ss_dssp -CHHHHHHHHHHHHHHHTTCTTCSC---CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred -chHHHHHHHHHHHHHhccchhhhh---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 456788888888888765533211 12466777777764 456667788888888875 466777778899999999
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHH--HHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHH
Q 000052 2144 LLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVA--ITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMA 2221 (2592)
Q Consensus 2144 lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~--~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR 2221 (2592)
+|.... ....+|..++..|+.+..+.......+ +.-...+ ...+.++.+.+ +.+.|
T Consensus 449 lL~~~~--~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l-------------~~L~~lL~~~~-------~~~v~ 506 (780)
T 2z6g_A 449 TVLRAG--DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL-------------PVVVKLLHPPS-------HWPLI 506 (780)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCH-------------HHHHHTTSTTC-------CHHHH
T ss_pred HHHccC--CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCH-------------HHHHHHhcCCC-------hHHHH
Confidence 986421 235899999999999965421111111 1111222 22333343221 12456
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHh
Q 000052 2222 ASLSAQISTMASDLYREQ-MKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIA 2300 (2592)
Q Consensus 2222 ~~v~~~i~~~~~~~~~~Q-~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~ 2300 (2592)
...+..|.+++..--.++ ..+.. -+|.-... +.+ +..-+| +.-.|.+-|
T Consensus 507 ~~A~~aL~nLa~~~~~~~~i~~~g---~i~~Lv~l---L~~----~~~~~~---~~aa~al~n----------------- 556 (780)
T 2z6g_A 507 KATVGLIRNLALCPANHAPLREQG---AIPRLVQL---LVR----AHQDTQ---RRTSMGGTQ----------------- 556 (780)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHTT---HHHHHHHH---HHH----HHHHHH---HTTC----------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHCC---CHHHHHHH---HHh----cchhHH---HHHhhcccc-----------------
Confidence 666666665542100000 00000 00000000 000 000000 011121111
Q ss_pred ccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCC
Q 000052 2301 ATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSA 2380 (2592)
Q Consensus 2301 ~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2380 (2592)
++ .-.+..+.++.+.+..|+..|. ..+.....+...|.+|.|+.+|.+.+
T Consensus 557 q~-~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~---------------------------- 606 (780)
T 2z6g_A 557 QQ-FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPI---------------------------- 606 (780)
T ss_dssp -C-CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSC----------------------------
T ss_pred ch-hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCC----------------------------
Confidence 00 0000111223344455555554 35666677888999999999986432
Q ss_pred CCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCchH--HHHHHHHHHhhc
Q 000052 2381 QPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVA 2448 (2592)
Q Consensus 2381 ~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~~--la~e~L~r~~~~ 2448 (2592)
+.|+..+...|..|+......+.|.+.++ ++.|++.+.+....+ .|+.+|+++...
T Consensus 607 -------~~v~~~a~~aL~~L~~~~~~~~~i~~~g~-----i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 607 -------ENIQRVAAGVLCELAQDKEAAEAIEAEGA-----TAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp -------HHHHHHHHHHHHHHHTSHHHHHHHHHTTC-----HHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHhcCHHHHHHHHHCCC-----HHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 25778999999999999888899988766 888998887754433 788999998864
No 37
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.27 E-value=1e-07 Score=128.82 Aligned_cols=57 Identities=32% Similarity=0.640 Sum_probs=30.7
Q ss_pred ChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCc---hHHHHHHHHHHHHH
Q 000052 1501 SEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPE---GREKFLAVQKAYER 1577 (2592)
Q Consensus 1501 s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~---~~ekF~~I~~AYev 1577 (2592)
...+.|++|||++ +++.++||+|||+|+++||||||++ +.++|++|++||++
T Consensus 19 ~~~~~y~~lg~~~-------------------------~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~ 73 (780)
T 3apo_A 19 HDQNFYSLLGVSK-------------------------TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73 (780)
T ss_dssp ----CHHHHTCCT-------------------------TCCHHHHHHHHCC-----------------------CTHHHH
T ss_pred CCCCHHHHcCCCC-------------------------CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHH
Confidence 3568999999994 7899999999999999999999964 67899999999999
Q ss_pred hhccc
Q 000052 1578 LQATM 1582 (2592)
Q Consensus 1578 Lsd~~ 1582 (2592)
|+|+.
T Consensus 74 L~~~~ 78 (780)
T 3apo_A 74 LKDED 78 (780)
T ss_dssp HHSHH
T ss_pred HcChH
Confidence 99974
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.25 E-value=0.00044 Score=89.55 Aligned_cols=367 Identities=13% Similarity=0.151 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHhhCccch-hhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLA-SIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La-~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
..++++++.+|....+-. +.+...|-+++|..+|... +++.++..|..+|..++. +......+...+ ++..|+.+
T Consensus 94 ~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G-aip~Lv~L 170 (529)
T 3tpo_A 94 LQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFISL 170 (529)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC-CHHHHHHH
Confidence 457889999996543322 2355678899999999753 346789889999988875 455566777655 77888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCC-CCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000052 2105 LHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQ-QETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2592)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~-e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~L 2181 (2592)
|.+ .++....++.+|..++. +++.....+++|++..|+.+|.... ..........++..|..+..++-..+.+. ..
T Consensus 171 L~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~ 249 (529)
T 3tpo_A 171 LASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AV 249 (529)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-HH
T ss_pred HcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-HH
Confidence 875 34566778899999986 4677888889999999999987542 12234555667778888887654444332 22
Q ss_pred HhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCC
Q 000052 2182 ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2592)
Q Consensus 2182 sKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~ 2261 (2592)
...+|. ++..+.+. +| +.+...+..+..++.. +++.. ..
T Consensus 250 ~~~lp~-L~~LL~~~--------------~~------~v~~~a~~aL~~l~~~---------------~~~~~--~~--- 288 (529)
T 3tpo_A 250 EQILPT-LVRLLHHN--------------DP------EVLADSCWAISYLTDG---------------PNERI--EM--- 288 (529)
T ss_dssp HHHHHH-HHHHTTSS--------------CH------HHHHHHHHHHHHHHSS---------------CHHHH--HH---
T ss_pred hhHHHH-HHHHhcCC--------------cH------HHHHHHHHHHHHhhhh---------------hhhhH--HH---
Confidence 333332 23333222 22 2344444444443321 11100 00
Q ss_pred CcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000052 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2592)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~ 2341 (2592)
++-.| ++...++.+..+ +..+..-...++..+....+.....+-..|-+
T Consensus 289 -v~~~g-----------------------~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 289 -VVKKG-----------------------VVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp -HHTTT-----------------------CHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred -HHhcc-----------------------chHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 00011 123334444432 22344445666777777778888888889999
Q ss_pred HHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCc
Q 000052 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQ 2420 (2592)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p~ 2420 (2592)
|.|+.+|.+.+ +.+++.|...|..|+. +..+...+.+.+.
T Consensus 338 ~~L~~LL~~~~-----------------------------------~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~---- 378 (529)
T 3tpo_A 338 AVFPSLLTNPK-----------------------------------TNIQKEATWTMSNITAGRQDQIQQVVNHGL---- 378 (529)
T ss_dssp GGHHHHTTCSS-----------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH----
T ss_pred HHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHhcccHHHHHHHHhcCc----
Confidence 99999886422 2467788888888765 7788888877544
Q ss_pred chHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhH
Q 000052 2421 VVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGR 2498 (2592)
Q Consensus 2421 ~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~r 2498 (2592)
+|.|+..+...... .-||-+|..+...+ ..+-+.+-++.|.|+.|+.||+.. +..+ +
T Consensus 379 -i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~---~~~~~~~l~~~g~i~~L~~LL~~~----------------d~~i-~ 437 (529)
T 3tpo_A 379 -VPFLVGVLSKADFKTQKAAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSAK----------------DTKI-I 437 (529)
T ss_dssp -HHHHHHHHHSSCHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHGGGCS----------------CHHH-H
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHCcCHHHHHHHhcCC----------------CHHH-H
Confidence 88888888775433 27888898887643 234566677899999999999742 1122 3
Q ss_pred HHHHHHHHHHHh---cCCChHHHHHHHhcCchhh
Q 000052 2499 VLAIEVLHAFAA---EGAHCSKVRDILSASDVWS 2529 (2592)
Q Consensus 2499 a~~V~~Lkam~~---~~~~G~~V~~iL~~s~vW~ 2529 (2592)
..+.++|..+.. ...+-+++..+++.+.-+.
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~ 471 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 471 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH
Confidence 344555555432 3445556666655555544
No 39
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.3e-06 Score=81.57 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=49.1
Q ss_pred CChHHHHHHhcccCCCCCCCCcccCcccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHhh
Q 000052 1500 LSEEEACKILEISLDDVSSDDSHKSYSSEEMSNISKKIENIDEEKLKRQYRKLAMKYHPDKNPEGREKFLAVQKAYERLQ 1579 (2592)
Q Consensus 1500 ~s~~~ay~iLgi~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~IKkaYRkLa~kyHPDknp~~~ekF~~I~~AYevLs 1579 (2592)
|+.+|||+||||++++ ..++.++|+++||+|....||||.. ....+..|++|+++|.
T Consensus 1 mt~~EA~~ILgv~~~~----------------------~~a~~~~Ik~~yr~Lm~~nhPDkGG-S~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 1 MTLDESCKILNIEESK----------------------GDLNMDKINNRFNYLFEVNDKEKGG-SFYLQSKVYRAAERLK 57 (65)
T ss_dssp CCHHHHHHHTTCCGGG----------------------TCCSHHHHHHHHHHHHHHTCGGGTC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCc----------------------CcCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHH
Confidence 6789999999999521 0268899999999999999999964 4678889999999997
Q ss_pred c
Q 000052 1580 A 1580 (2592)
Q Consensus 1580 d 1580 (2592)
.
T Consensus 58 ~ 58 (65)
T 2guz_B 58 W 58 (65)
T ss_dssp H
T ss_pred H
Confidence 5
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.13 E-value=0.0013 Score=87.01 Aligned_cols=399 Identities=15% Similarity=0.113 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...++.+|.|+...++.....+...+.++.|..+|... +..++..++.+|..++. +.++...|.+.+ .+..|+.+
T Consensus 115 ~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~~i~~~g-~v~~Lv~l 190 (644)
T 2z6h_A 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVNI 190 (644)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHHHhcCcHHHHHHHHcC-ChHHHHHH
Confidence 46688999999998776666566677888899998753 45678888889988884 888888888765 67888888
Q ss_pred HhhCc--chHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000052 2105 LHYAP--ACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2592)
Q Consensus 2105 L~~~p--~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~Ls 2182 (2592)
|.... ..+..++.+|..|+.+++.....++.|++..|+.++... ....|..++..|..+..+. ++. ....
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~----~~~~~~~a~~~L~nL~~~~---~~~-~~~~ 262 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP----SQRLVQNCLWTLRNLSDAA---TKQ-EGME 262 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS----CHHHHHHHHHHHHHHGGGC---TTC-CSCH
T ss_pred HHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcc---hhh-hhhh
Confidence 87542 334567888888988888888888999999999988753 5788889999999998643 110 0111
Q ss_pred hhCcHHHHHHHhcCchh---hHHHhhcccccCcccccCHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCcchhhhc
Q 000052 2183 RFLPDGLVSVIRDGPGE---AVVSALEQTTETPELVWTPAMAASLSA--QISTMASDLYREQMKGRVVDWDVPEQASAQQ 2257 (2592)
Q Consensus 2183 KfLP~~fv~amrdsP~~---a~v~~fds~~EnPELIWn~~mR~~v~~--~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~ 2257 (2592)
..+ +.++..+++...+ .++..|-.-..+ +++.|..+.+ .|..+..-+.. . +. .+.+-+... .
T Consensus 263 ~~i-~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-----~~~~~~~v~~~g~v~~Lv~lL~~-~---~~-~~~v~~~a~--~ 329 (644)
T 2z6h_A 263 GLL-GTLVQLLGSDDINVVTCAAGILSNLTCN-----NYKNKMMVCQVGGIEALVRTVLR-A---GD-REDITEPAI--C 329 (644)
T ss_dssp HHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH-H---TT-CHHHHHHHH--H
T ss_pred hHH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHHc-c---CC-cHHHHHHHH--H
Confidence 222 2233334332111 011122111111 1122222211 11111111000 0 00 000000000 0
Q ss_pred ccCCCcEEeeeeehhhccCCCCCCCCc------hHHH-HHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCch
Q 000052 2258 EMRDEPQVGGIYVRLFLKDPKFPLRNP------KRFL-EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPA 2330 (2592)
Q Consensus 2258 ~l~~El~VGGVYlRLFl~nP~w~LR~P------k~FL-~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~ 2330 (2592)
- |+.+. -++| ..+. .+.+..+++.+...+ +.++..-...++..|.. .+.
T Consensus 330 a-----------L~nL~------~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~nLa~-~~~ 385 (644)
T 2z6h_A 330 A-----------LRHLT------SRHQEAEMAQNAVRLHYGLPVVVKLLHPPS------HWPLIKATVGLIRNLAL-CPA 385 (644)
T ss_dssp H-----------HHHHT------SSSTTHHHHHHHHHHTTHHHHHHHTTSTTC------CHHHHHHHHHHHHHHTT-SGG
T ss_pred H-----------HHHHh------cCCchHHHHHHHHHHccChHHHHHHhCccC------chHHHHHHHHHHHHHcc-CHH
Confidence 0 00000 0001 0011 234555555554321 12333334444444443 343
Q ss_pred hhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHH
Q 000052 2331 LADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEA 2410 (2592)
Q Consensus 2331 Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~a 2410 (2592)
-...+...|-+|.|+.+|...+. +++.+.. -...+ .. ... ....+.+...++..|+.|+.+..+...
T Consensus 386 ~~~~i~~~~~i~~Lv~lL~~~~~-------~vr~~a~--~al~n-~~-~~~--~~~~~~v~~~a~~aL~~La~~~~~~~~ 452 (644)
T 2z6h_A 386 NHAPLREQGAIPRLVQLLVRAHQ-------DTQRRTS--MGGTQ-QQ-FVE--GVRMEEIVEGCTGALHILARDVHNRIV 452 (644)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHH-------HHTTC--------------CC--SSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccch-------hhhhHhh--hcccc-ch-hcc--cccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34677788999999999986431 1211100 00000 00 000 012356888999999999999999888
Q ss_pred HhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCccccc
Q 000052 2411 MAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMK 2488 (2592)
Q Consensus 2411 la~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~ 2488 (2592)
+.+..+ +++|+..+...... ..|+.+|..+... .+....-.+.|-++.|..++...
T Consensus 453 l~~~~~-----i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-----~~~~~~i~~~g~l~~L~~ll~~~------------ 510 (644)
T 2z6h_A 453 IRGLNT-----IPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATAPLTELLHSR------------ 510 (644)
T ss_dssp HHHTTC-----HHHHHHHTTCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHHHHHHHTTCS------------
T ss_pred HHhCCc-----HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHcCChhHHHHHHcCC------------
Confidence 887666 88899988765443 2677888887642 23344445789999999999632
Q ss_pred ccccchhhhHHHHHHHHHHHHhcCC
Q 000052 2489 WNESEASIGRVLAIEVLHAFAAEGA 2513 (2592)
Q Consensus 2489 ~~~~~a~~~ra~~V~~Lkam~~~~~ 2513 (2592)
+. ..|..+..+|..|+.+..
T Consensus 511 ----~~-~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 511 ----NE-GVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp ----CH-HHHHHHHHHHHHHTTTSC
T ss_pred ----CH-HHHHHHHHHHHHHhccCc
Confidence 11 357788999999998775
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.12 E-value=0.00067 Score=87.66 Aligned_cols=329 Identities=15% Similarity=0.164 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhh--CccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHc-CChhHHHHHHhhchhHHHHHH
Q 000052 2027 QFGLTSLQNILTS--NPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQ 2103 (2592)
Q Consensus 2027 ~maL~AL~nLL~~--nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaIA~~~~vl~~Ll~ 2103 (2592)
..++++++.+|.. ||-... +...|-+++|.++|... +++.+|..|..+|..++ .+.+....|...+ ++..|+.
T Consensus 75 ~~a~~~~rklls~e~~ppi~~-ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G-aIp~Lv~ 150 (510)
T 3ul1_B 75 LQATQAARKLLSREKQPPIDN-IIRAGLIPKFVSFLGKT--DCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFIS 150 (510)
T ss_dssp HHHHHHHHHHHTCSSCCCHHH-HHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHH-HHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHH
Confidence 4578899999964 454433 45568899999999753 34678988999998874 6778888888755 7888888
Q ss_pred HHhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHHhhcCCC-CCCcHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 000052 2104 MLHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQ-QETPLQQRAAAASLLGKLVGQPMHGPRVAIT 2180 (2592)
Q Consensus 2104 lL~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~lL~~~~-e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~ 2180 (2592)
+|.+ .++.+..++.+|..++.+ +++....+++|++..|+.++.... +.........++..|..+...+-..+.+. .
T Consensus 151 lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~ 229 (510)
T 3ul1_B 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-A 229 (510)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH-H
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH-H
Confidence 8875 345667788999999874 677788889999999999987542 12234555667778888887654433322 1
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccC
Q 000052 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMR 2260 (2592)
Q Consensus 2181 LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~ 2260 (2592)
....+| .++..+.+. ++ +.+...+..+..++. ++ ++....
T Consensus 230 ~~~~lp-~L~~LL~~~--------------~~------~v~~~A~~aL~~L~~--------~~------~~~~~~----- 269 (510)
T 3ul1_B 230 VEQILP-TLVRLLHHN--------------DP------EVLADSCWAISYLTD--------GP------NERIEM----- 269 (510)
T ss_dssp HHHHHH-HHHHHTTCS--------------CH------HHHHHHHHHHHHHTS--------SC------HHHHHH-----
T ss_pred HHhHHH-HHHHHHhcC--------------CH------HHHHHHHHHHHHHhh--------ch------hhhHHH-----
Confidence 223333 233333222 22 234444444544321 11 000000
Q ss_pred CCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCC
Q 000052 2261 DEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGY 2340 (2592)
Q Consensus 2261 ~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~ 2340 (2592)
++-.| ++...++.+..+ +.++..-...++..+....+.....+-..|-
T Consensus 270 --i~~~g-----------------------~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~ 317 (510)
T 3ul1_B 270 --VVKKG-----------------------VVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 317 (510)
T ss_dssp --HHTTT-----------------------CHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred --HHhcc-----------------------cchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccc
Confidence 00011 223334444432 2233344556666777777778888888899
Q ss_pred hHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCC
Q 000052 2341 VPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTP 2419 (2592)
Q Consensus 2341 ~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p 2419 (2592)
+|.|+.+|.+.+ ..+++.+...|..|+. +..+...+.+.+.
T Consensus 318 l~~L~~LL~~~~-----------------------------------~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~--- 359 (510)
T 3ul1_B 318 LAVFPSLLTNPK-----------------------------------TNIQKEATWTMSNITAGRQDQIQQVVNHGL--- 359 (510)
T ss_dssp GGGCC-CTTCSS-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH---
T ss_pred hHHHHHHhcCCC-----------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHhcCC---
Confidence 999888875422 2467788888888764 7888888877544
Q ss_pred cchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhc
Q 000052 2420 QVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2420 ~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~ 2475 (2592)
+|.|+..+...... .-|+-+|..+...+ ..+-+..-++.|.|+.|+.||+.
T Consensus 360 --i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~---~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 360 --VPFLVGVLSKADFKTQKEAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---CHHHHHHHHHTTCHHHHHHGGGC
T ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcC
Confidence 88899888775433 27778888887643 23455566789999999999974
No 42
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.12 E-value=0.00027 Score=90.80 Aligned_cols=317 Identities=18% Similarity=0.168 Sum_probs=207.4
Q ss_pred ccccccccccCCCCCCChhhHHHHHHHHHcC-Ch-hHHHHHHhhchhHHHHHHHHhhC--cchHHHHHHHHHHhhcc-hH
Q 000052 2053 LLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CA-SCLEAMVADGSSLLLLLQMLHYA--PACREGVLHVLYALAST-PE 2127 (2592)
Q Consensus 2053 L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~-~CVeaIA~~~~vl~~Ll~lL~~~--p~~~~~vL~~L~aL~S~-~~ 2127 (2592)
++.|+..|.. +++.++..|+..|..+.. .. +.+..+...+ ++..|+.+|... ++.+..++.+|..+++. ++
T Consensus 76 l~~lv~~L~s---~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g-~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 76 LPAMIGGVYS---DDNNLQLEATTQFRKLLSIERSPPIEEVIQSG-VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHHTS---SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTT-CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3445555543 245678888888877643 32 4556666644 788888888753 56677788999999984 77
Q ss_pred HHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcc
Q 000052 2128 LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQ 2207 (2592)
Q Consensus 2128 LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds 2207 (2592)
.....+..|++..|+.+|... ++.+|..++..|+.+..+ +|..+..+.. .+.-...+.++..
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~~---~~~~~~~i~~-----------~g~l~~Ll~lL~~ 213 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVAGD---SPKCRDLVLA-----------NGALLPLLAQLNE 213 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHT---CHHHHHHHHH-----------TTCHHHHHHTCCT
T ss_pred HHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhCC---ChhhHHHHHH-----------CCcHHHHHHHHhc
Confidence 888888999999999999753 689999999999999864 4444333322 1111223444421
Q ss_pred cccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHH
Q 000052 2208 TTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRF 2287 (2592)
Q Consensus 2208 ~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~F 2287 (2592)
. . +.++|..+...+..++.. .+ .. +...
T Consensus 214 ~-~------~~~v~~~a~~~L~~L~~~-------~~-------~~-------------------------------~~~~ 241 (528)
T 4b8j_A 214 H-T------KLSMLRNATWTLSNFCRG-------KP-------QP-------------------------------SFEQ 241 (528)
T ss_dssp T-C------CHHHHHHHHHHHHHHHCS-------SS-------CC-------------------------------CHHH
T ss_pred C-C------CHHHHHHHHHHHHHHHcC-------CC-------CC-------------------------------cHHH
Confidence 1 1 445666666666555321 01 10 0111
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCC
Q 000052 2288 LEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNS 2367 (2592)
Q Consensus 2288 L~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~ 2367 (2592)
..+++..++..+... |+++..-...|+..|....+...+.+...|.+|.|+.+|.+.+
T Consensus 242 ~~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--------------- 299 (528)
T 4b8j_A 242 TRPALPALARLIHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--------------- 299 (528)
T ss_dssp HTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---------------
T ss_pred HHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---------------
Confidence 134555566665432 3445555566677776666666677778899999999986432
Q ss_pred cccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhccc-Cch--HHHHHHHH
Q 000052 2368 EADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQ-GGS--ILALETLK 2443 (2592)
Q Consensus 2368 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p~~~~~l~~~m~~~-~~~--~la~e~L~ 2443 (2592)
+.++..|+.+|..|+. +..+.+.+.+. .++|.|+..+... ... ..||-+|.
T Consensus 300 --------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 300 --------------------PSVLIPALRTVGNIVTGDDAQTQCIIDH-----QALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp --------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTT-----THHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHh-----hhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 2477899999999987 56666666653 3589999999876 433 38889998
Q ss_pred HHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2444 RVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2444 r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
.+... .+..+...++.|+++.|+.+|... + .-.|..++.+|..++..
T Consensus 355 nl~~~----~~~~~~~~~~~~~i~~L~~lL~~~----------------~-~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAG----NKDQIQAVINAGIIGPLVNLLQTA----------------E-FDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTS----CHHHHHHHHHTTCHHHHHHHHHHS----------------C-HHHHHHHHHHHHHHHHH
T ss_pred HHHCC----CHHHHHHHHHCCCHHHHHHHHhcC----------------C-HHHHHHHHHHHHHHHcC
Confidence 88752 345666777889999999999642 0 12455666677777664
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.11 E-value=0.0038 Score=80.91 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...++.||.|+...++.....+...+-++.|..+|.. ++..+++.|..+|..++. +..+.+.+...+ ++..|+.+
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g-~i~~Lv~l 385 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGV 385 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHHHHHHHHhcccHHHHHHHHhcC-cHHHHHHH
Confidence 3567889999998888777777777888888888875 356789999999988875 777888777644 77888888
Q ss_pred HhhC-cchHHHHHHHHHHhhc--chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHh
Q 000052 2105 LHYA-PACREGVLHVLYALAS--TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLV 2168 (2592)
Q Consensus 2105 L~~~-p~~~~~vL~~L~aL~S--~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~ 2168 (2592)
|... ++.+..+.-+|..+++ +.+.++..++.|++..|+++|... .+.++..+...|..+.
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAISNIF 448 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Confidence 8653 3455556677777764 567888899999999999999642 5778888888887775
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.06 E-value=0.0054 Score=81.29 Aligned_cols=406 Identities=15% Similarity=0.166 Sum_probs=231.3
Q ss_pred HHHHHHHHHhhhhccCCCchhhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhcc-ChHHHHHHHh
Q 000052 1643 LLVAASELLWLTCASSSLNGEELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQ-FESARTEVLQ 1721 (2592)
Q Consensus 1643 ll~~A~EL~~~Tv~~S~lN~eEL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~-F~~cr~~i~~ 1721 (2592)
....|.+.+..-+.....+.+.+.+.|+++.|.+++..- ..++-..+++++..++. .++++..+.+
T Consensus 114 v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-------------~~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-------------NVKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-------------CHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455555544444455666667788888777666421 12455556667776664 7888888877
Q ss_pred hcchHHHHHHhhccccchhHHHHHHHHHHHHhCCHHHHHHHHHhccHHHHHHHhhcCCCcccccCccccccccccHHHHH
Q 000052 1722 FSGLVQDIVHCTELELVPGAVDAALQTIAHVSVSSELQDALLKAGALWFLLPLLLQYDSTAEKSDTNESHGVGASVQIAK 1801 (2592)
Q Consensus 1722 ~~~l~~di~~~l~l~~~~~l~~aALe~v~~~a~~~elq~~i~~~GVLw~LL~lLf~YD~Tlees~le~~~~~~~~~qivk 1801 (2592)
.. .+.-++.++.-.....++..++.++.+++.+++.+..+.++|++-.|+.++-.. +....
T Consensus 181 ~g-~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-----------------~~~~~- 241 (644)
T 2z6h_A 181 SG-GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-----------------SQRLV- 241 (644)
T ss_dssp TT-HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-----------------CHHHH-
T ss_pred cC-ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-----------------CHHHH-
Confidence 64 455666666544445678899999999999999999999999988888777321 12222
Q ss_pred HHHHHHHHHHHHHhhCcCCCCCCCCccHHHHHHHHHhccHHHHHHhhcCChHHHHHHhhccCcCcccccchhHHHHHHHH
Q 000052 1802 NMHAVRAAQALSRLSGLCSNGISIPYNEAAASALRALLTPKLASLLKDQIPKNLLSKLNTNLESPEIIWNSSTRAELLKF 1881 (2592)
Q Consensus 1802 n~lAk~Al~aL~rL~g~~~d~~~~P~n~~v~~~L~klLtP~l~~~L~d~~p~~~L~~LnSn~EnPeLIWnn~tRaEL~e~ 1881 (2592)
..++.+|..|....... .. ....+ |.++..|.+. |...|......
T Consensus 242 ----~~a~~~L~nL~~~~~~~----~~------~~~~i-~~Lv~lL~~~--------------------d~~v~~~a~~a 286 (644)
T 2z6h_A 242 ----QNCLWTLRNLSDAATKQ----EG------MEGLL-GTLVQLLGSD--------------------DINVVTCAAGI 286 (644)
T ss_dssp ----HHHHHHHHHHGGGCTTC----CS------CHHHH-HHHHHHTTCS--------------------CHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhcchhh----hh------hhhHH-HHHHHHHcCC--------------------CHHHHHHHHHH
Confidence 22455666664321110 00 11122 3344444432 23344444444
Q ss_pred HHHHHhccCCCCCcccCCccccccccccCCcEEeeEEEEeeccCCCCCCCChHHHH-HHHHHHHHHHhhcccCCCCcccc
Q 000052 1882 VDQQRASQSPDGSYDLKDSNGFLYEALSKELYVGNVYLRVYNDQPDFEITEPEAFC-VALIDFISYLVHNQSATKSDVQG 1960 (2592)
Q Consensus 1882 L~~q~~~~~~~~~w~l~~~~~F~Ys~l~~ELvVGGVYLRlyneqP~~~Lr~Pk~Fl-~~LLdfl~~~~~~~~~~~~d~~~ 1960 (2592)
|..... .++ .. -+.+. ...++.+.+.+.....
T Consensus 287 L~~L~~-~~~-------~~--------------------------------~~~v~~~g~v~~Lv~lL~~~~~------- 319 (644)
T 2z6h_A 287 LSNLTC-NNY-------KN--------------------------------KMMVCQVGGIEALVRTVLRAGD------- 319 (644)
T ss_dssp HHHHHT-TCH-------HH--------------------------------HHHHHHTTHHHHHHHHHHHHTT-------
T ss_pred HHHHHc-CCH-------HH--------------------------------HHHHHHcCCHHHHHHHHHccCC-------
Confidence 332210 000 00 00000 0122233332211000
Q ss_pred cccccccchhhhhccccCCCCCCccccCCCCcccCccccccccccccccccccccCcchHHHHHHHHHHHHHHHHHHhhC
Q 000052 1961 EESLDGLSSKIVQDKLSLDPSSSKTFELPSDATDSSMNERKVNDESLAVSDRKVTGKEDSVMIKNLQFGLTSLQNILTSN 2040 (2592)
Q Consensus 1961 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~s~~~s~~~~~~~ed~e~l~~l~maL~AL~nLL~~n 2040 (2592)
..++ ...++.||.|+-..+
T Consensus 320 ----------------------------------------------------------~~~v---~~~a~~aL~nL~~~~ 338 (644)
T 2z6h_A 320 ----------------------------------------------------------REDI---TEPAICALRHLTSRH 338 (644)
T ss_dssp ----------------------------------------------------------CHHH---HHHHHHHHHHHTSSS
T ss_pred ----------------------------------------------------------cHHH---HHHHHHHHHHHhcCC
Confidence 0112 355678888887665
Q ss_pred ccc---hhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhhC---------
Q 000052 2041 PNL---ASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHYA--------- 2108 (2592)
Q Consensus 2041 P~L---a~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~~--------- 2108 (2592)
+.- ...+...+.++.|.++|... .+..+++.|..+|..++.+..+.+.+...+ ++..|+.+|...
T Consensus 339 ~~~~~~q~~v~~~~~l~~L~~lL~~~--~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~-~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 339 QEAEMAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp TTHHHHHHHHHHTTHHHHHHHTTSTT--CCHHHHHHHHHHHHHHTTSGGGHHHHHHTT-HHHHHHHHHHHHHHHHTTC--
T ss_pred chHHHHHHHHHHccChHHHHHHhCcc--CchHHHHHHHHHHHHHccCHHHHHHHHHcC-CHHHHHHHHhccchhhhhHhh
Confidence 532 12233345677888888753 234799999999999999888887777644 778888877641
Q ss_pred --------------cchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCC
Q 000052 2109 --------------PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHG 2174 (2592)
Q Consensus 2109 --------------p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhG 2174 (2592)
.+.+..++.+|..|+.+++......+.|++..|+++|... .+.+|..++..|..|..+
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~~l~~~---- 487 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP----IENIQRVAAGVLCELAQD---- 487 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHHTS----
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcC----
Confidence 1223457788888888877777777999999999998653 567899999999998765
Q ss_pred hHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHH------------HHHHHHhcC
Q 000052 2175 PRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMAS------------DLYREQMKG 2242 (2592)
Q Consensus 2175 PrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~------------~~~~~Q~~~ 2242 (2592)
+..+..+.+ .+.-+..+.++. ++ |.+.|......|..++. ++......+
T Consensus 488 ~~~~~~i~~-----------~g~l~~L~~ll~--~~------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~ 548 (644)
T 2z6h_A 488 KEAAEAIEA-----------EGATAPLTELLH--SR------NEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT 548 (644)
T ss_dssp HHHHHHHHH-----------TTCHHHHHHHTT--CS------CHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHH-----------cCChhHHHHHHc--CC------CHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhC
Confidence 444333322 111122233322 22 33455555555544432 233444556
Q ss_pred CcccccCCcch
Q 000052 2243 RVVDWDVPEQA 2253 (2592)
Q Consensus 2243 p~~~W~lPe~~ 2253 (2592)
....|.-|+++
T Consensus 549 ~~~~w~~~~~~ 559 (644)
T 2z6h_A 549 EPMAWNETADL 559 (644)
T ss_dssp SCGGGC-----
T ss_pred CCccccccccc
Confidence 66889977776
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.99 E-value=0.00073 Score=86.00 Aligned_cols=361 Identities=15% Similarity=0.123 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
...+.++|.++-...+.-...+...+.++.|...|... +++.++..+...|..++.+.+....|...+ .+..|+.+|
T Consensus 34 ~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g-~i~~L~~lL 110 (529)
T 1jdh_A 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKML 110 (529)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCchhHHHHHHcC-CHHHHHHHH
Confidence 35677888888776654333333335677788887642 246789999999999999998888888764 788888888
Q ss_pred hh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000052 2106 HY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2592)
Q Consensus 2106 ~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsK 2183 (2592)
.+ .++.+..++.+|..++.. +.......+.|++..|+++|... +...|..++..|..+..+ .+..+..+..
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~~~~~L~~la~~---~~~~~~~i~~ 183 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQILAYG---NQESKLIILA 183 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 75 345667788999999875 34555556789999999999753 578899999999888652 2433333222
Q ss_pred -hCcHHHHHHHhcCchhh----HHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcc
Q 000052 2184 -FLPDGLVSVIRDGPGEA----VVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQE 2258 (2592)
Q Consensus 2184 -fLP~~fv~amrdsP~~a----~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~ 2258 (2592)
=..+.++..|+++..+. +..++..-..+| +.|..+.+ .-+-...-....++. ++ .. ..
T Consensus 184 ~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~---~g~~~~L~~ll~~~~-----~~-~~-~~- 246 (529)
T 1jdh_A 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVE---AGGMQALGLHLTDPS-----QR-LV-QN- 246 (529)
T ss_dssp TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST------THHHHHHH---TTHHHHHHTTTTSSC-----HH-HH-HH-
T ss_pred CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc------ccHHHHHH---CCCHHHHHHHHhCCC-----hH-HH-HH-
Confidence 12334555555542211 111111111111 11221110 000000000111110 00 00 00
Q ss_pred cCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccC
Q 000052 2259 MRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYL 2338 (2592)
Q Consensus 2259 l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~l 2338 (2592)
.-++.-.|--..|.+ +...+++..++..+... |+++..-...++..|-...+...+.+...
T Consensus 247 ------a~~~L~~l~~~~~~~------~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 307 (529)
T 1jdh_A 247 ------CLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCNNYKNKMMVCQV 307 (529)
T ss_dssp ------HHHHHHHHHTTCTTC------SCCHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred ------HHHHHHHHhcCChhh------HHHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 000000000000111 11235667777766432 34455566777777777777788889999
Q ss_pred CChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC----hhHHHHHhhc
Q 000052 2339 GYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS----TTCAEAMAAT 2414 (2592)
Q Consensus 2339 G~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s----~~Cv~ala~~ 2414 (2592)
|-+|+|+.+|.+.+. .+.++..+++.|..|+.+ +.+...+...
T Consensus 308 ~~v~~L~~ll~~~~~---------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~ 354 (529)
T 1jdh_A 308 GGIEALVRTVLRAGD---------------------------------REDITEPAICALRHLTSRHQEAEMAQNAVRLH 354 (529)
T ss_dssp THHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred CChHHHHHHHHccCC---------------------------------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc
Confidence 999999999975321 024778999999999875 2245566654
Q ss_pred CCCCCcchHHHHHHhcccCc-h--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhc
Q 000052 2415 STGTPQVVPILMKAIGWQGG-S--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2415 ~~~~p~~~~~l~~~m~~~~~-~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~ 2475 (2592)
+. +|.|++.+..... . .-+|.+|..+... +..+ ..-.+.|+++.|+.+|..
T Consensus 355 ~~-----i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~----~~~~~~~~i~~L~~ll~~ 408 (529)
T 1jdh_A 355 YG-----LPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANH----APLREQGAIPRLVQLLVR 408 (529)
T ss_dssp TC-----HHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGH----HHHHHTTHHHHHHHHHHH
T ss_pred CC-----hhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhh----HHHHHcCCHHHHHHHHHH
Confidence 43 8999999987653 2 2777888888753 2222 344578999999999964
No 46
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.98 E-value=0.00078 Score=86.80 Aligned_cols=319 Identities=14% Similarity=0.127 Sum_probs=207.5
Q ss_pred cccccccccccCCCCCCChhhHHHHHHHHHcCC--hhHHHHHHhhchhHHHHHHHHhh--CcchHHHHHHHHHHhhc-ch
Q 000052 2052 KLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC--ASCLEAMVADGSSLLLLLQMLHY--APACREGVLHVLYALAS-TP 2126 (2592)
Q Consensus 2052 ~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n--~~CVeaIA~~~~vl~~Ll~lL~~--~p~~~~~vL~~L~aL~S-~~ 2126 (2592)
.++.|+..|.. +++.++..|+..|..+... ...++.+...+ ++..|+.+|.. .++.+..++.+|..+++ ++
T Consensus 88 ~i~~lv~~L~s---~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g-~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 88 ELPQMTQQLNS---DDMQEQLSATVKFRQILSREHRPPIDVVIQAG-VVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CHHHHHHHHSC---SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTT-CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 45567777754 3457888899999877543 34555666544 77888888875 35667778899999987 45
Q ss_pred HHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhc
Q 000052 2127 ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALE 2206 (2592)
Q Consensus 2127 ~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fd 2206 (2592)
+.....+..|++..|+.+|... ++.+|..++..|+.+..+ +|..+..+.. .+--..++.++.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~---~~~~~~~~~~-----------~~~l~~L~~ll~ 225 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD---STDYRDYVLQ-----------CNAMEPILGLFN 225 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH-----------TTCHHHHHHGGG
T ss_pred HHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC---CccchHHHHH-----------cCcHHHHHHHhc
Confidence 6777778899999999999742 689999999999999875 2333322211 111223445554
Q ss_pred ccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchH
Q 000052 2207 QTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKR 2286 (2592)
Q Consensus 2207 s~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~ 2286 (2592)
. . +.++|......+..++.. .++.. +..
T Consensus 226 ~--~------~~~v~~~a~~~L~~L~~~------~~~~~--------------------------------------~~~ 253 (530)
T 1wa5_B 226 S--N------KPSLIRTATWTLSNLCRG------KKPQP--------------------------------------DWS 253 (530)
T ss_dssp S--C------CHHHHHHHHHHHHHHHCC------SSSCC--------------------------------------CHH
T ss_pred c--C------CHHHHHHHHHHHHHHhCC------CCCCC--------------------------------------cHH
Confidence 3 1 345566655555554321 00100 011
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCC
Q 000052 2287 FLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGN 2366 (2592)
Q Consensus 2287 FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~ 2366 (2592)
...+++..++..+... |+++..-...++..|....+...+.+...|.+|.|+..|.+.+
T Consensus 254 ~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-------------- 312 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSM-------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-------------- 312 (530)
T ss_dssp HHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC--------------
T ss_pred HHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC--------------
Confidence 1223445555555432 3345555667777777777777777878899999999886421
Q ss_pred CcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCC-hhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHH
Q 000052 2367 SEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAS-TTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLK 2443 (2592)
Q Consensus 2367 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s-~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~ 2443 (2592)
..++..|+.+|..|+.+ ....+.+.+. .+++.|+..+...... ..||.+|.
T Consensus 313 ---------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 313 ---------------------TLVQTPALRAVGNIVTGNDLQTQVVINA-----GVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT-----THHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ---------------------hhhHHHHHHHHHHHHcCCHHHHHHHHHc-----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 24778999999999854 5555555543 3588899998876433 37888998
Q ss_pred HHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhcC
Q 000052 2444 RVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAEG 2512 (2592)
Q Consensus 2444 r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~~ 2512 (2592)
.+... .+..+...++.|+++.|+.+|... + .-.|..++.+|..|+...
T Consensus 367 ~l~~~----~~~~~~~~~~~~~l~~L~~lL~~~----------------~-~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 367 NITAG----NTEQIQAVIDANLIPPLVKLLEVA----------------E-YKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHTTS----CHHHHHHHHHTTCHHHHHHHHHHS----------------C-HHHHHHHHHHHHHHHHHT
T ss_pred HHHcC----CHHHHHHHHHCCCHHHHHHHHhcC----------------C-HHHHHHHHHHHHHHHhcC
Confidence 87642 234555666889999999999632 1 124666777888887753
No 47
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.90 E-value=0.0017 Score=80.77 Aligned_cols=308 Identities=13% Similarity=0.082 Sum_probs=190.1
Q ss_pred CCChhhHHHHHHHHHcC--ChhHHHHHHhhchhHHHHHHHHhhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhh
Q 000052 2067 DSNIPQLCLNVLSLLTT--CASCLEAMVADGSSLLLLLQMLHYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYI 2141 (2592)
Q Consensus 2067 ~~~vq~~aL~VL~~ls~--n~~CVeaIA~~~~vl~~Ll~lL~~~--p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYL 2141 (2592)
++.++..|+..|..+.. ..+-++.+.....++..|+.+|... ++.+..++.+|..+++ +++..+..++.|++..|
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 112 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHH
Confidence 34567788888876531 2222344444424778888888754 4666778899988887 45666777789999999
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHH
Q 000052 2142 LELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMA 2221 (2592)
Q Consensus 2142 L~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR 2221 (2592)
+.+|... .+.+|..++..|+.+..+ .|..+..+.. .+--...+.++... . +.++|
T Consensus 113 ~~lL~~~----~~~vr~~a~~~L~~l~~~---~~~~~~~~~~-----------~~~i~~L~~~l~~~-~------~~~v~ 167 (450)
T 2jdq_A 113 IELLSSE----FEDVQEQAVWALGNIAGD---STMCRDYVLD-----------CNILPPLLQLFSKQ-N------RLTMT 167 (450)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH-----------TTCHHHHHHHTTSC-C------CHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHccC---CHHHHHHHHH-----------CCCHHHHHHHhcCC-C------CHHHH
Confidence 9998753 689999999999999875 3444333221 11112233333311 1 24556
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhc
Q 000052 2222 ASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAA 2301 (2592)
Q Consensus 2222 ~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~ 2301 (2592)
......+..++.. .++...+ .+..+++..++..+..
T Consensus 168 ~~a~~~L~~l~~~------~~~~~~~--------------------------------------~~~~~~l~~L~~~l~~ 203 (450)
T 2jdq_A 168 RNAVWALSNLCRG------KSPPPEF--------------------------------------AKVSPCLNVLSWLLFV 203 (450)
T ss_dssp HHHHHHHHHHHCC------SSSCCCG--------------------------------------GGTGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC------CCCCCCH--------------------------------------HHHHHHHHHHHHHHcc
Confidence 6655555554321 0011000 0011233444444432
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCC
Q 000052 2302 THYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQ 2381 (2592)
Q Consensus 2302 ~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2381 (2592)
. |.++..-...++..|....+.....+...|.+|.|+..|.+.+
T Consensus 204 ~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----------------------------- 247 (450)
T 2jdq_A 204 S-------DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND----------------------------- 247 (450)
T ss_dssp C-------CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-----------------------------
T ss_pred C-------CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-----------------------------
Confidence 1 3345555666777777766666677777899999999885321
Q ss_pred CCCChhhHhhhhHHHHHHHhhCC-hhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHH
Q 000052 2382 PVQTPQERVRLSCLRVLHQLAAS-TTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVA 2458 (2592)
Q Consensus 2382 ~~~~~~~~v~~~~l~vlh~ls~s-~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~ 2458 (2592)
..++..|+..|..|+.+ ....+.+.+. .+++.|++.+...... .-||.+|..+... .+..+.
T Consensus 248 ------~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~----~~~~~~ 312 (450)
T 2jdq_A 248 ------YKVVSPALRAVGNIVTGDDIQTQVILNC-----SALQSLLHLLSSPKESIKKEACWTISNITAG----NRAQIQ 312 (450)
T ss_dssp ------HHHHHHHHHHHHHHTTSCHHHHHHHHTT-----THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS----CHHHHH
T ss_pred ------hhHHHHHHHHHHHHhhCChHHHHHHHHC-----ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----CHHHHH
Confidence 24778999999999875 3344444432 3588899998875432 2777888887642 234455
Q ss_pred HHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2459 QGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2459 qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
..++.|+++.|+++|... + .-.|..++.+|..++..
T Consensus 313 ~~~~~~~l~~L~~~l~~~----------------~-~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 313 TVIDANIFPALISILQTA----------------E-FRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTHHHHHHHHHHHS----------------C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcC----------------C-HHHHHHHHHHHHHHHcC
Confidence 566789999999999632 1 12466677778777764
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.87 E-value=0.0017 Score=82.66 Aligned_cols=318 Identities=15% Similarity=0.105 Sum_probs=195.2
Q ss_pred cccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh--CcchHHHHHHHHHHhhcchHHH
Q 000052 2052 KLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY--APACREGVLHVLYALASTPELA 2129 (2592)
Q Consensus 2052 ~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~--~p~~~~~vL~~L~aL~S~~~LV 2129 (2592)
-++.|..+|.. +++.++..|+.+|..++.+..+...+......+..|+.+|.. .++.+..+..+|..|+..++..
T Consensus 18 ~i~~Lv~lL~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 18 AIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHHHHHHHTC---SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHHHHHHHhCC---CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34445555553 356789999999999999999887777655578888888864 4566777889999999888888
Q ss_pred HHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH-HhhCcHHHHHHHhcCchhhHHHhhccc
Q 000052 2130 WAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL-ARFLPDGLVSVIRDGPGEAVVSALEQT 2208 (2592)
Q Consensus 2130 kqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~L-sKfLP~~fv~amrdsP~~a~v~~fds~ 2208 (2592)
....+.|++..|++++... .+.+|..++..|..+..+.-. .+ ..+. ...+ ...+.++.+.
T Consensus 95 ~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~-~~-~~i~~~g~i-------------~~L~~ll~~~ 155 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLHQEG-AK-MAVRLAGGL-------------QKMVALLNKT 155 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHHCTT-HH-HHHHHHTHH-------------HHHHHGGGCC
T ss_pred HHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcc-hH-HHHHHcCCH-------------HHHHHHHhcC
Confidence 8888899999999998753 488999999999999875211 11 1111 1111 2233444431
Q ss_pred ccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHH
Q 000052 2209 TETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFL 2288 (2592)
Q Consensus 2209 ~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL 2288 (2592)
+.+.|......+..++.. ++ +.-. . +.-.
T Consensus 156 --------~~~~~~~~~~~L~~la~~-------~~-------~~~~---~----i~~~---------------------- 184 (529)
T 1jdh_A 156 --------NVKFLAITTDCLQILAYG-------NQ-------ESKL---I----ILAS---------------------- 184 (529)
T ss_dssp --------CHHHHHHHHHHHHHHHTT-------CH-------HHHH---H----HHHT----------------------
T ss_pred --------CHHHHHHHHHHHHHHHhC-------CH-------HHHH---H----HHHC----------------------
Confidence 233444444444433320 00 0000 0 0000
Q ss_pred HHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCc
Q 000052 2289 EGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSE 2368 (2592)
Q Consensus 2289 ~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~ 2368 (2592)
+.++.++..+...++ ......+. .+..-|...|...+.+...|.+|.|+..|...+
T Consensus 185 -~~i~~L~~ll~~~~~------~~~~~~a~-~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~---------------- 240 (529)
T 1jdh_A 185 -GGPQALVNIMRTYTY------EKLLWTTS-RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS---------------- 240 (529)
T ss_dssp -THHHHHHHHHHHCCC------HHHHHHHH-HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC----------------
T ss_pred -CCHHHHHHHHHhCCh------HHHHHHHH-HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC----------------
Confidence 123334444433211 11222222 233334567788888888999999988874321
Q ss_pred ccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHh
Q 000052 2369 ADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVV 2446 (2592)
Q Consensus 2369 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~ 2446 (2592)
..++..++..|..|+......+ . ...++|.|++.+...... ..||.+|..+.
T Consensus 241 -------------------~~~~~~a~~~L~~l~~~~~~~~------~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 241 -------------------QRLVQNCLWTLRNLSDAATKQE------G-MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCTTCS------C-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -------------------hHHHHHHHHHHHHHhcCChhhH------H-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2466788888988887643211 1 124588888888654332 37888998886
Q ss_pred hccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2447 VAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2447 ~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
..+ +.......+.|.|+.|+.+|.... +....+..++.+|..++.+
T Consensus 295 ~~~----~~~~~~~~~~~~v~~L~~ll~~~~---------------~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 295 CNN----YKNKMMVCQVGGIEALVRTVLRAG---------------DREDITEPAICALRHLTSR 340 (529)
T ss_dssp TTC----HHHHHHHHHTTHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHHTSS
T ss_pred cCC----HHHHHHHHHcCChHHHHHHHHccC---------------CHHHHHHHHHHHHHHHHcC
Confidence 532 334555668899999999996420 1012455667788877664
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.85 E-value=0.0034 Score=81.06 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=181.0
Q ss_pred CCChhhHHHHHHHHHcC--ChhHHHHHHhhchhHHHHHHHHhh--CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhh
Q 000052 2067 DSNIPQLCLNVLSLLTT--CASCLEAMVADGSSLLLLLQMLHY--APACREGVLHVLYALAS-TPELAWAAAKHGGVVYI 2141 (2592)
Q Consensus 2067 ~~~vq~~aL~VL~~ls~--n~~CVeaIA~~~~vl~~Ll~lL~~--~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYL 2141 (2592)
+...|..|..-+..+.+ ..+=++.|.+.+ +++.|+.+|.. .|+....+..+|..+++ +++..+..++.|++..|
T Consensus 70 d~~~q~~a~~~~rklls~e~~ppi~~ii~~G-~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L 148 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREKQPPIDNIIRAG-LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 148 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT-HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 34556666666654432 222267777756 78999999964 34555667788888876 66788888999999999
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHH
Q 000052 2142 LELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMA 2221 (2592)
Q Consensus 2142 L~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR 2221 (2592)
+.+|... +..+|..++..|+.+..| +|..+..+.+ .+.-...+.++..... ... ...+.
T Consensus 149 v~lL~s~----~~~v~e~A~~aL~nLa~d---~~~~r~~v~~-----------~G~i~~Ll~lL~~~~~-~~~--~~~~~ 207 (510)
T 3ul1_B 149 ISLLASP----HAHISEQAVWALGNIAGD---GSAFRDLVIK-----------HGAIDPLLALLAVPDL-STL--ACGYL 207 (510)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHHTT---CHHHHHHHHH-----------TTCHHHHHHHTCSSCG-GGS--CHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHhC---CHHHHHHHHH-----------cCChHHHHHHHHhccc-hhh--hHHHH
Confidence 9999753 689999999999999874 5665544432 1111223333332110 000 11112
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhc
Q 000052 2222 ASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAA 2301 (2592)
Q Consensus 2222 ~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~ 2301 (2592)
..+...+..++ .+. +| +.+-....+++..++.++..
T Consensus 208 ~~a~~~L~nl~--------~~~--------------------------------~~----~~~~~~~~~~lp~L~~LL~~ 243 (510)
T 3ul1_B 208 RNLTWTLSNLC--------RNK--------------------------------NP----APPLDAVEQILPTLVRLLHH 243 (510)
T ss_dssp HHHHHHHHHHH--------CCC--------------------------------SS----CCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHh--------hcc--------------------------------cc----hhHHHHHHhHHHHHHHHHhc
Confidence 22222222111 111 00 01122234455555555543
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCC
Q 000052 2302 THYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQ 2381 (2592)
Q Consensus 2302 ~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2381 (2592)
. |.++..-...|+..|....+.....+...|.+|+|+.+|.+.+
T Consensus 244 ~-------~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----------------------------- 287 (510)
T 3ul1_B 244 N-------DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE----------------------------- 287 (510)
T ss_dssp S-------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-----------------------------
T ss_pred C-------CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-----------------------------
Confidence 2 3345555667777777777777788889999999999987532
Q ss_pred CCCChhhHhhhhHHHHHHHhh-CChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHH
Q 000052 2382 PVQTPQERVRLSCLRVLHQLA-ASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVA 2458 (2592)
Q Consensus 2382 ~~~~~~~~v~~~~l~vlh~ls-~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~ 2458 (2592)
..++..+++.|..++ .+......+.+.+. ++.|.+.+...... ..||-+|..+... ......
T Consensus 288 ------~~v~~~al~aL~nl~~~~~~~~~~i~~~g~-----l~~L~~LL~~~~~~v~~~A~~aL~nl~a~----~~~~~~ 352 (510)
T 3ul1_B 288 ------LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-----LAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQ 352 (510)
T ss_dssp ------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-----GGGCC-CTTCSSHHHHHHHHHHHHHHTTS----CHHHHH
T ss_pred ------hhhhhHHHHHHHHhhcCCHHHHHHHhhccc-----hHHHHHHhcCCCHHHHHHHHHHHHHHHcC----cHHHHH
Confidence 136678889988775 46666677766544 66666677665443 3788999988753 234555
Q ss_pred HHHhhChHHHHHHhhhc
Q 000052 2459 QGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2459 qal~~~Lv~~LL~lL~~ 2475 (2592)
...+.|+++.|+.+|..
T Consensus 353 ~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 353 QVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp HHHHTTHHHHHHHHHHS
T ss_pred HHHhcCCHHHHHHHHcC
Confidence 66788999999999964
No 50
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.82 E-value=0.0057 Score=83.24 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHh
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~ 2106 (2592)
+.++++|.++-...+.........+-+..|+..|... .+..++..|...|..++.+......|...+ ++..|+.+|.
T Consensus 168 ~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g-~I~~Lv~lL~ 244 (780)
T 2z6g_A 168 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHREGLLAIFKSG-GIPALVNMLG 244 (780)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhHHHHHHcC-CHHHHHHHHc
Confidence 4567788887765543332222335567777777643 256789999999999999988888888754 7888888887
Q ss_pred hC-cchHHHHHHHHHHhhcch-HHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH-h
Q 000052 2107 YA-PACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA-R 2183 (2592)
Q Consensus 2107 ~~-p~~~~~vL~~L~aL~S~~-~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~Ls-K 2183 (2592)
.. +..+..++.+|..|++.. ...+.....|++..|+++|... +..+|..++..|..+... .+..+..+. .
T Consensus 245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~La~~---~~e~~~~i~~~ 317 (780)
T 2z6g_A 245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQILAYG---NQESKLIILAS 317 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTT---CHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhcC---ChHHHHHHHHc
Confidence 53 456677999999998754 4444555789999999999752 567888898899877642 233322221 1
Q ss_pred hCcHHHHHHHhcCchhh----HHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhccc
Q 000052 2184 FLPDGLVSVIRDGPGEA----VVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEM 2259 (2592)
Q Consensus 2184 fLP~~fv~amrdsP~~a----~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l 2259 (2592)
=..+.++..++++..+. ++.++..-..++ +.|..+.+ .-+-...-....++ +......
T Consensus 318 ~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~------~~~~~i~~---~g~l~~Ll~lL~~~-------~~~~~~~-- 379 (780)
T 2z6g_A 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS------SNKPAIVE---AGGMQALGLHLTDP-------SQRLVQN-- 379 (780)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST------THHHHHHH---TTHHHHHGGGTTCS-------CHHHHHH--
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh------HHHHHHHH---hchHHHHHHHHcCC-------chHHHHH--
Confidence 11233444454432110 001111111111 01111100 00000000000000 0000000
Q ss_pred CCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCC
Q 000052 2260 RDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLG 2339 (2592)
Q Consensus 2260 ~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG 2339 (2592)
+.++-..|.-..+.+.. ..+++..++..+... |.++..-...++..|....+.....+...|
T Consensus 380 -----a~~~L~~L~~~~~~~~~------~~~~i~~Lv~lL~~~-------d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 380 -----CLWTLRNLSDAATKQEG------MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp -----HHHHHHHHHTTCTTCSC------CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred -----HHHHHHHHhccchhhhh------hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 00011111111111111 134666666666532 344555566777777776677778888899
Q ss_pred ChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCCh----hHHHHHhhcC
Q 000052 2340 YVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAAST----TCAEAMAATS 2415 (2592)
Q Consensus 2340 ~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~----~Cv~ala~~~ 2415 (2592)
-+|+|+.+|...+. .+.++..|++.|..|+... .+...+....
T Consensus 442 ~i~~Lv~lL~~~~~---------------------------------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 442 GIEALVRTVLRAGD---------------------------------REDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp HHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCC---------------------------------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 99999999975321 0247788999999998631 1223444333
Q ss_pred CCCCcchHHHHHHhcccCc-h--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhc
Q 000052 2416 TGTPQVVPILMKAIGWQGG-S--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDW 2475 (2592)
Q Consensus 2416 ~~~p~~~~~l~~~m~~~~~-~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~ 2475 (2592)
+++.|++.+..... . .-||.+|..+... +.-.....+.|+|+.|+++|..
T Consensus 489 -----~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-----~~~~~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 489 -----GLPVVVKLLHPPSHWPLIKATVGLIRNLALC-----PANHAPLREQGAIPRLVQLLVR 541 (780)
T ss_dssp -----CHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-----HHHHHHHHHTTHHHHHHHHHHH
T ss_pred -----CHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHHHHHHHHHh
Confidence 38899999887654 2 2788999988752 1122445578999999999964
No 51
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.81 E-value=0.0026 Score=86.47 Aligned_cols=135 Identities=7% Similarity=0.051 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh
Q 000052 2028 FGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY 2107 (2592)
Q Consensus 2028 maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~ 2107 (2592)
-++.||.||...++.....+...|.+++|..+|.. ++..|++.|.++|..++.+.++...+.....++..|+.++..
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s---~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME---DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS---CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence 36889999999887776667767889999999875 357899999999999999999988887434578888888875
Q ss_pred C-cchHHHHHHHHHHhhc-chHHHHHHHH-cCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000052 2108 A-PACREGVLHVLYALAS-TPELAWAAAK-HGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2592)
Q Consensus 2108 ~-p~~~~~vL~~L~aL~S-~~~LVkqal~-~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~ 2169 (2592)
. .+.+..+.-+|..|++ ++..++..+. .|++..|++++.+. +..+|..++..|..|..
T Consensus 677 ~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~----d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP----SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS----SHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC----CHHHHHHHHHHHHHHHh
Confidence 3 2344557777888887 6778888888 89999999998753 67888899999999876
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.79 E-value=0.00067 Score=77.41 Aligned_cols=233 Identities=19% Similarity=0.225 Sum_probs=161.4
Q ss_pred ccccccccccCCCCCCChhhHHHHHHHHHcCChh-HHHHHHhhchhHHHHHHHHhhC-cchHHHHHHHHHHhhcc-hHHH
Q 000052 2053 LLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCAS-CLEAMVADGSSLLLLLQMLHYA-PACREGVLHVLYALAST-PELA 2129 (2592)
Q Consensus 2053 L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~-CVeaIA~~~~vl~~Ll~lL~~~-p~~~~~vL~~L~aL~S~-~~LV 2129 (2592)
++.|+++|... ++.++..|+..|..++.... +...+...+ ++..|+.+|.+. ++.+..++.+|..++.. ++..
T Consensus 4 i~~L~~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLTST---DSETQKEAARDLAEIASGPASAIKAIVDAG-GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTTCS---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 45566676643 46788999999998876554 777777655 778888888753 45667788999999976 7888
Q ss_pred HHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccc
Q 000052 2130 WAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTT 2209 (2592)
Q Consensus 2130 kqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~ 2209 (2592)
....+.|++..|+.+|... ++.+|..++.+|+.|.. +.|..+..+.+ .+--...+.++.+
T Consensus 80 ~~~~~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~-----------~~~i~~L~~~l~~-- 139 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIAS---GPDEAIKAIVD-----------AGGVEVLVKLLTS-- 139 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHTT---SCHHHHHHHHH-----------TTHHHHHHHHTTC--
T ss_pred HHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHc---CCHHHHHHHHH-----------CCCHHHHHHHHcC--
Confidence 8889999999999999752 58999999999999975 22333322221 1111223333332
Q ss_pred cCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHH
Q 000052 2210 ETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLE 2289 (2592)
Q Consensus 2210 EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~ 2289 (2592)
T Consensus 140 -------------------------------------------------------------------------------- 139 (252)
T 4hxt_A 140 -------------------------------------------------------------------------------- 139 (252)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcc
Q 000052 2290 GLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEA 2369 (2592)
Q Consensus 2290 ~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~ 2369 (2592)
.|+++..-...++..|....+...+.+...|.+|.|+..|.+.+
T Consensus 140 -------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----------------- 183 (252)
T 4hxt_A 140 -------------------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD----------------- 183 (252)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-----------------
T ss_pred -------------------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-----------------
Confidence 01233344555666666667777777788899999999986321
Q ss_pred cccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHh
Q 000052 2370 DRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVV 2446 (2592)
Q Consensus 2370 ~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~ 2446 (2592)
+.++..++..|..|+. +..+.+.+.+.+. ++.|++.+...... ..|+.+|..+.
T Consensus 184 ------------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-----i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 184 ------------------SEVQKEAARALANIASGPTSAIKAIVDAGG-----VEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp ------------------HHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-----HHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----HHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 2578899999999987 7777777776544 78888888764332 26677777776
Q ss_pred hc
Q 000052 2447 VA 2448 (2592)
Q Consensus 2447 ~~ 2448 (2592)
..
T Consensus 241 ~~ 242 (252)
T 4hxt_A 241 SG 242 (252)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.73 E-value=0.00094 Score=76.91 Aligned_cols=105 Identities=19% Similarity=0.189 Sum_probs=81.2
Q ss_pred ccccccccCCCCCCChhhHHHHHH-HHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhc-chHHHHH
Q 000052 2055 PLFECFSVPFAPDSNIPQLCLNVL-SLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALAS-TPELAWA 2131 (2592)
Q Consensus 2055 ~LF~~L~~~~~~~~~vq~~aL~VL-~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S-~~~LVkq 2131 (2592)
.++..|.. +++.++..|+..| ..++.+.+-.+.+...+ ++..|+.+|.. .++.+..++.+|..++. +++....
T Consensus 16 ~~~~~L~s---~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 16 QMTQQLNS---DDMQEQLSATRKFSQILSDGNEQIQAVIDAG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHS---SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHcC---CCHHHHHHHHHHHHHHHcCCCchHHHHHHcC-cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34444543 3568899999998 55665666666676654 77888888875 35666778899999996 6788888
Q ss_pred HHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHH
Q 000052 2132 AAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKL 2167 (2592)
Q Consensus 2132 al~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM 2167 (2592)
.++.|++..|+.+|... ++.+|..++..|+.+
T Consensus 92 i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP----NEQILQEALWALSNI 123 (252)
T ss_dssp HHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHh
Confidence 89999999999999763 578999999999988
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.72 E-value=0.02 Score=77.99 Aligned_cols=338 Identities=14% Similarity=0.134 Sum_probs=215.0
Q ss_pred cccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcch--------
Q 000052 2056 LFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTP-------- 2126 (2592)
Q Consensus 2056 LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~-------- 2126 (2592)
+..+|... ..+..+++.|++.|.-+|.....-+.+..+..++..|+.++.+ .+.....++.+|..+++.+
T Consensus 382 l~~lL~~~-~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~ 460 (810)
T 3now_A 382 CRRFLIKP-GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPE 460 (810)
T ss_dssp HHHHHHCS-SCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCS
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHH
Confidence 33444432 1257899999999999998888888888766788999998875 4456677999999998632
Q ss_pred ---------------------HH----HHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 000052 2127 ---------------------EL----AWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITL 2181 (2592)
Q Consensus 2127 ---------------------~L----Vkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~L 2181 (2592)
+. ++..+++|++..|..++... .+.+|+++|.+|..++.| +.-+..+
T Consensus 461 l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~----s~~vqe~Aa~aL~NLA~d----~~~r~~V 532 (810)
T 3now_A 461 MIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE----SHNSQELIARVLNAVCGL----KELRGKV 532 (810)
T ss_dssp CGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC----CHHHHHHHHHHHHHHHTS----HHHHHHH
T ss_pred HHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCC----HHHHHHH
Confidence 12 36778889999999998753 689999999999999875 2222222
Q ss_pred HhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCC
Q 000052 2182 ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRD 2261 (2592)
Q Consensus 2182 sKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~ 2261 (2592)
-+ .+.-...|+++.+. ++..|......|.+++.. .+|...|.
T Consensus 533 v~-----------~Gaip~Lv~LL~s~--------~~~~k~~Aa~AL~nL~~~------~~p~~~~~------------- 574 (810)
T 3now_A 533 VQ-----------EGGVKALLRMALEG--------TEKGKRHATQALARIGIT------INPEVSFS------------- 574 (810)
T ss_dssp HH-----------TTHHHHHHHHHHSS--------CHHHHHHHHHHHHHHHHH------SCHHHHTT-------------
T ss_pred HH-----------CCCHHHHHHHHccC--------CHHHHHHHHHHHHHHhcC------CChhhhhc-------------
Confidence 22 12112234444332 124455555556555432 11111110
Q ss_pred CcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCCh
Q 000052 2262 EPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYV 2341 (2592)
Q Consensus 2262 El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~ 2341 (2592)
+ +=..+.+..+++++... . +.....-...|+..|....+.....+..-|.+
T Consensus 575 -----~------------------~~~~~aIppLv~LL~~~---~---~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 575 -----G------------------QRSLDVIRPLLNLLQQD---C---TALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp -----T------------------HHHHHTHHHHHHTTSTT---S---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred -----c------------------hhhhcHHHHHHHHhCCC---C---cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 0 00112334444444321 0 00010113457777777777888889999999
Q ss_pred HHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcc
Q 000052 2342 PKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQV 2421 (2592)
Q Consensus 2342 pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~ 2421 (2592)
|+|+.+|.+.+. .|+..|.++|..|+.+..+...+.. ++ .+
T Consensus 626 ~~Lv~LL~s~~~-----------------------------------~Vq~~A~~~L~NLa~~~~~~~~~v~-~~---g~ 666 (810)
T 3now_A 626 SKIEYYLMEDHL-----------------------------------YLTRAAAQCLCNLVMSEDVIKMFEG-NN---DR 666 (810)
T ss_dssp HHHHHHHHSCCT-----------------------------------THHHHHHHHHHHHTTSHHHHHHHHS-SS---SH
T ss_pred HHHHHHHcCCCH-----------------------------------HHHHHHHHHHHHHhCChHHHHHHHh-cc---Cc
Confidence 999999986431 3778999999999999988877773 12 35
Q ss_pred hHHHHHHhcccCchH--HHHHHHHHHhhccccchhHHHHHHHh-hChHHHHHHhhhcccCCCCCCcccccccccchhhhH
Q 000052 2422 VPILMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGLK-VGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGR 2498 (2592)
Q Consensus 2422 ~~~l~~~m~~~~~~~--la~e~L~r~~~~~~r~~~~lv~qal~-~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~r 2498 (2592)
++.|.+-++.....+ -||=+|.-+.+. .+..++.-++ .|.++.|..||... +. -.|
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~----s~~~~~~ii~~~g~I~~Lv~LL~s~----------------d~-~vq 725 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITSV----SVKCCEKILAIASWLDILHTLIANP----------------SP-AVQ 725 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHTSTTHHHHHHHHHTCS----------------SH-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHHHcCCHHHHHHHHCCC----------------CH-HHH
Confidence 899999988754432 678888877652 1334555566 79999999999632 11 235
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhcCchhhhhc
Q 000052 2499 VLAIEVLHAFAAEGAHCSKVRDILSASDVWSAYK 2532 (2592)
Q Consensus 2499 a~~V~~Lkam~~~~~~G~~V~~iL~~s~vW~~Yk 2532 (2592)
-.++.+|..+... +......+-++.+=....
T Consensus 726 ~~A~~aL~NL~~~---s~e~~~~l~e~G~i~~L~ 756 (810)
T 3now_A 726 HRGIVIILNMINA---GEEIAKKLFETDIMELLS 756 (810)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHTSTHHHHHT
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHH
Confidence 5667788877762 233344444444444333
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.71 E-value=0.0019 Score=82.42 Aligned_cols=370 Identities=13% Similarity=0.115 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCC-hhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTC-ASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n-~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...+..+|.++...++.....+...|.++.|..+|.. +++.++..|...|..++.. .++-..|...+ .+..|+.+
T Consensus 19 q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G-~i~~Lv~l 94 (457)
T 1xm9_A 19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRSTTNKLETRRQN-GIREAVSL 94 (457)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CHHHHHHH
Confidence 3567889999988888877667778889999999985 3567999999999999875 88888888765 78999999
Q ss_pred Hh-h-CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcC-------CC-----CCCcHHHHHHHHHHHHHHhcC
Q 000052 2105 LH-Y-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLP-------SQ-----QETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2105 L~-~-~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~-------~~-----e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
|. + .++....+..+|..|+++++.-...++ |++..|+++|.. +. +...+.+...++..|..+..+
T Consensus 95 L~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 95 LRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred HhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 97 3 356677788999999987665555667 999999999831 10 012355556899999998764
Q ss_pred CCCChHHHHHHHhh--CcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHH-------HHHhc
Q 000052 2171 PMHGPRVAITLARF--LPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLY-------REQMK 2241 (2592)
Q Consensus 2171 klhGPrV~~~LsKf--LP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~-------~~Q~~ 2241 (2592)
|..+..+... .-+.++..|+++ ..+ --+++...+.....+..++.... ..+..
T Consensus 174 ----~~~~~~i~~~~g~i~~Lv~lL~~~------------~~~--~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 174 ----DAGRQTMRNYSGLIDSLMAYVQNC------------VAA--SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp ----HHHHHHHTTSTTHHHHHHHHHHHH------------HHH--TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred ----HHHHHHHHHcCCCHHHHHHHHHhh------------ccc--cCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 5544444321 112233333321 000 00111122222222222221100 00000
Q ss_pred CCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCC-CCCCchH----HHHHHHHHHHHHHhccCCCCCCCCchhhHH
Q 000052 2242 GRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKF-PLRNPKR----FLEGLLDQYLSSIAATHYDTQAIDPELPLL 2316 (2592)
Q Consensus 2242 ~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w-~LR~Pk~----FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~l 2316 (2592)
.+...-+..+.............-+|.-+ |-- .-++|+. +-.+.+..++.++..++ ++++.+-
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~------~~~~~e~ 303 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDC------PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK------KDATLEA 303 (457)
T ss_dssp TC----------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHH
T ss_pred ccccccccccccchhhccchhhhhccccC------CccccccCchHHHHHhCcchHHHHHHHHhhcC------CHHHHHH
Confidence 00000000000000000000000000000 000 0122222 12456677777777642 2344444
Q ss_pred HHHHHHHHHhcCchhhhh-----hccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhh
Q 000052 2317 LSAALVSLLRVHPALADH-----VGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVR 2391 (2592)
Q Consensus 2317 lt~A~v~Ll~~~p~Lad~-----v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 2391 (2592)
.+-|+..|-+.+.....+ +-..|-+|.|+++|.+.+ +.++
T Consensus 304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-----------------------------------~~v~ 348 (457)
T 1xm9_A 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-----------------------------------SDVV 348 (457)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-----------------------------------HHHH
T ss_pred HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-----------------------------------HhHH
Confidence 455555555544333322 234788999999986432 2577
Q ss_pred hhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCc-------hH-HHHHHHHHHhhccccchhHHHHHHHhh
Q 000052 2392 LSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGG-------SI-LALETLKRVVVAGNRARDALVAQGLKV 2463 (2592)
Q Consensus 2392 ~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~-------~~-la~e~L~r~~~~~~r~~~~lv~qal~~ 2463 (2592)
+.+...|..||.+....+.+.+ . ++|+|+.-+..... .+ -+|.+|..++..+ +.......++
T Consensus 349 ~~A~~aL~nls~~~~~~~~i~~-~-----~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~----~~~~~~i~~~ 418 (457)
T 1xm9_A 349 RSGASLLSNMSRHPLLHRVMGN-Q-----VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ----PQLAKQYFSS 418 (457)
T ss_dssp HHHHHHHHHHHTSGGGHHHHHH-H-----THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC----THHHHHHCCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHH-h-----hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHc
Confidence 8899999999999888887775 2 38888888776421 22 6778998888643 3566677789
Q ss_pred ChHHHHHHhhhc
Q 000052 2464 GLVDVLLGLLDW 2475 (2592)
Q Consensus 2464 ~Lv~~LL~lL~~ 2475 (2592)
|-++.|..||..
T Consensus 419 g~l~~L~~L~~~ 430 (457)
T 1xm9_A 419 SMLNNIINLCRS 430 (457)
T ss_dssp HHHHHHHHHHHC
T ss_pred CCHHHHHHHHcC
Confidence 999999999963
No 56
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.65 E-value=0.0051 Score=81.02 Aligned_cols=383 Identities=13% Similarity=0.102 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC--ChhHHHHHHhhchhHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT--CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~--n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
..+..+|.++-..++.-...+...|.+++|.++|.. ++..++..|...|..++. +.++-..|.+.+ .+..|+.+
T Consensus 66 ~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s---~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G-aIp~LV~L 141 (584)
T 3l6x_A 66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH---PKKEVHLGACGALKNISFGRDQDNKIAIKNCD-GVPALVRL 141 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC---SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC---CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcC-CHHHHHHH
Confidence 456788999988777777777788999999999986 357899999999999997 588988898866 78999999
Q ss_pred HhhC--cchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhc-----CC---------CCCCcHHHHHHHHHHHHHHh
Q 000052 2105 LHYA--PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLL-----PS---------QQETPLQQRAAAASLLGKLV 2168 (2592)
Q Consensus 2105 L~~~--p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~-----~~---------~e~~~~~~R~~aA~lL~kM~ 2168 (2592)
|.+. ++....+..+|..|+++++.- ..+-.||+..|++++. .. .......++..++.+|.-|.
T Consensus 142 L~s~~~~~~~e~aa~aL~nLS~~~~~k-~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs 220 (584)
T 3l6x_A 142 LRKARDMDLTEVITGTLWNLSSHDSIK-MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVS 220 (584)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTSGGGH-HHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHhCCchhh-HHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHh
Confidence 9863 344566778889998876543 3333578888888761 00 01224688999999999998
Q ss_pred cCCCCChHHHHHHHhh--CcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000052 2169 GQPMHGPRVAITLARF--LPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVD 2246 (2592)
Q Consensus 2169 ~DklhGPrV~~~LsKf--LP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~ 2246 (2592)
. +++..+..+.+. +.+.++..++..- . ...+ ++...+...-.|.+++.....+.. +. ..
T Consensus 221 ~---~~~~~R~~i~~~~Gli~~LV~~L~~~~-----~-----~~~~----~~~~~enav~aL~NLs~~~~~e~~-~~-~~ 281 (584)
T 3l6x_A 221 S---ERSEARRKLRECDGLVDALIFIVQAEI-----G-----QKDS----DSKLVENCVCLLRNLSYQVHREIP-QA-ER 281 (584)
T ss_dssp S---SCHHHHHHHHHSTTHHHHHHHHHHHHH-----H-----TTCC----SCHHHHHHHHHHHHHHTTHHHHST-TC-CC
T ss_pred c---CCHHHHHHHHHcCCcHHHHHHHHHHhh-----c-----ccCc----cHHHHHHHHHHHHHhhcccccccc-ch-hh
Confidence 7 455544444332 2223333333210 0 0111 333444444445555444322210 00 01
Q ss_pred ccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHH----HHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHH
Q 000052 2247 WDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRF----LEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALV 2322 (2592)
Q Consensus 2247 W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~F----L~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v 2322 (2592)
|.- .. .. +. + |. ..++|+.. -.+.+..++.++.... +.++++-.+.|+.
T Consensus 282 ~~~--~~--~~---~~--~-~~-----------~~~~~~Gve~L~~~~~v~~Ll~LL~~s~------~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 282 YQE--AA--PN---VA--N-NT-----------GTSPARGYELLFQPEVVRIYISLLKESK------TPAILEASAGAIQ 334 (584)
T ss_dssp -----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred hhh--hc--cc---cc--c-cc-----------cccCchhHHHHhcccHHHHHHHHHccCC------CHHHHHHHHHHHH
Confidence 100 00 00 00 0 00 23444432 1245677777776531 2345566666777
Q ss_pred HHHhcCchhh----hhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHH
Q 000052 2323 SLLRVHPALA----DHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVL 2398 (2592)
Q Consensus 2323 ~Ll~~~p~La----d~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vl 2398 (2592)
.|-+.....+ ..|-..|-+|.|+.+|.+.+ +.+.+.+...|
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~-----------------------------------~~v~~~A~~aL 379 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-----------------------------------ERVVKAASGAL 379 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC-----------------------------------HHHHHHHHHHH
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC-----------------------------------HHHHHHHHHHH
Confidence 7765542222 23344577999999986532 14667888899
Q ss_pred HHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccC---------ch-HHHHHHHHHHhhccccchhHHHHHHHhhChHHH
Q 000052 2399 HQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQG---------GS-ILALETLKRVVVAGNRARDALVAQGLKVGLVDV 2468 (2592)
Q Consensus 2399 h~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~---------~~-~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~ 2468 (2592)
.-||.....-+.|.+ . +||.|+.-..... +. .-||-+|..+...+ +.-.+.-.+.|.|+.
T Consensus 380 ~nLs~~~~~~~~I~~-g-----~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~----~~~~~~I~~~g~I~~ 449 (584)
T 3l6x_A 380 RNLAVDARNKELIGK-H-----AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN----LEAAKKLRETQGIEK 449 (584)
T ss_dssp HHHHTTCSCHHHHHH-H-----HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHH
T ss_pred HHHhCChhHHHHHHh-C-----CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC----HHHHHHHHHCCChHH
Confidence 999887766666642 2 4788887766531 11 25778888887532 334445568899999
Q ss_pred HHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCChHHHHHHHhc
Q 000052 2469 LLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAEGAHCSKVRDILSA 2524 (2592)
Q Consensus 2469 LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~~~~G~~V~~iL~~ 2524 (2592)
|.+||.... ....+.| .+..+|..|... ...+.++.+
T Consensus 450 Lv~LL~s~~--------------~~~~v~k-~Aa~vL~nl~~~----~elr~~~kk 486 (584)
T 3l6x_A 450 LVLINKSGN--------------RSEKEVR-AAALVLQTIWGY----KELRKPLEK 486 (584)
T ss_dssp HHHHHTCSS--------------SCHHHHH-HHHHHHHHHHTS----HHHHHHHHT
T ss_pred HHHHHhCCC--------------CChHHHH-HHHHHHHHHHcC----HHHHHHHHH
Confidence 999996320 0112333 456688888763 456777777
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.63 E-value=0.006 Score=69.55 Aligned_cols=236 Identities=19% Similarity=0.190 Sum_probs=164.1
Q ss_pred HHHHHHHHhh-CcchHHHHHHHHHHhhcch-HHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCCh
Q 000052 2098 LLLLLQMLHY-APACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGP 2175 (2592)
Q Consensus 2098 l~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~-~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGP 2175 (2592)
+..|+.+|.+ .++.+..++..|..++... +.....++.|++..|+++|... ++.+|..++..|+.+..+ .+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~---~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASG---PD 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS---CH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC---Ch
Confidence 4456666654 3455667888888888644 5888888999999999999763 488999999999998664 23
Q ss_pred HHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhh
Q 000052 2176 RVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASA 2255 (2592)
Q Consensus 2176 rV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~ 2255 (2592)
..+..+.+ .. ++.
T Consensus 77 ~~~~~~~~------------~~---~i~---------------------------------------------------- 89 (252)
T 4hxt_A 77 EAIKAIVD------------AG---GVE---------------------------------------------------- 89 (252)
T ss_dssp HHHHHHHH------------TT---HHH----------------------------------------------------
T ss_pred HHHHHHHH------------CC---CHH----------------------------------------------------
Confidence 33222211 10 011
Q ss_pred hcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhh
Q 000052 2256 QQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHV 2335 (2592)
Q Consensus 2256 ~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v 2335 (2592)
.++..+..+ |+++..-...++..|....+...+.+
T Consensus 90 --------------------------------------~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 90 --------------------------------------VLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp --------------------------------------HHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred --------------------------------------HHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 133333321 23445556667777777788888888
Q ss_pred ccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhC-ChhHHHHHhhc
Q 000052 2336 GYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAA-STTCAEAMAAT 2414 (2592)
Q Consensus 2336 ~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~-s~~Cv~ala~~ 2414 (2592)
...|.+|.|+..|.+.+ +.++..++.+|..|+. +..+.+.+.+.
T Consensus 125 ~~~~~i~~L~~~l~~~~-----------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 169 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTD-----------------------------------SEVQKEAARALANIASGPDEAIKAIVDA 169 (252)
T ss_dssp HHTTHHHHHHHHTTCSC-----------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 88899999999876322 2478899999999997 67777788775
Q ss_pred CCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHHhhChHHHHHHhhhcccCCCCCCccccccccc
Q 000052 2415 STGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNES 2492 (2592)
Q Consensus 2415 ~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~ 2492 (2592)
+. ++.|+..+...... ..|+.+|..+... .+.......+.|.++.|+++|+..
T Consensus 170 ~~-----i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll~~~---------------- 224 (252)
T 4hxt_A 170 GG-----VEVLVKLLTSTDSEVQKEAARALANIASG----PTSAIKAIVDAGGVEVLQKLLTST---------------- 224 (252)
T ss_dssp TH-----HHHHHHHTTCSCHHHHHHHHHHHHHHTTS----BHHHHHHHHHTTHHHHHHHGGGCS----------------
T ss_pred cC-----HHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHCCC----------------
Confidence 44 89999999875433 3788999888752 345666677899999999999631
Q ss_pred chhhhHHHHHHHHHHHHhcCC
Q 000052 2493 EASIGRVLAIEVLHAFAAEGA 2513 (2592)
Q Consensus 2493 ~a~~~ra~~V~~Lkam~~~~~ 2513 (2592)
+ ...|..++.+|..+.....
T Consensus 225 ~-~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 225 D-SEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp C-HHHHHHHHHHHHHHHHTCB
T ss_pred c-HHHHHHHHHHHHHHHcCCC
Confidence 1 1357788889998887543
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.51 E-value=0.0076 Score=76.92 Aligned_cols=138 Identities=17% Similarity=0.100 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhCccch-----hhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLA-----SIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLL 2100 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La-----~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~ 2100 (2592)
.+-+.-||.|+-..+.... ..+...+-++.|+.+|.. ++..+++.|...|+.++.+......|.+ + ++..
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~---~~~~v~~~A~~aL~nls~~~~~~~~i~~-~-~i~~ 375 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS---GNSDVVRSGASLLSNMSRHPLLHRVMGN-Q-VFPE 375 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSGGGHHHHHH-H-THHH
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC---CCHhHHHHHHHHHHHHhcCHHHHHHHHH-h-hhHH
Confidence 3556788888877654422 123345677888999876 3568999999999999999888877764 3 7888
Q ss_pred HHHHHhhC-c------chHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCC
Q 000052 2101 LLQMLHYA-P------ACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQP 2171 (2592)
Q Consensus 2101 Ll~lL~~~-p------~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~Dk 2171 (2592)
|..+|... + +....++.+|..+.. +++..+...++||+..|.+++... .+..++..|+.+|..|..++
T Consensus 376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~---~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTSSST
T ss_pred HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC---CcHHHHHHHHHHHHHHHcch
Confidence 88888753 1 233457777776654 677888889999999999999763 25788999999999988754
No 59
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=97.20 E-value=0.0003 Score=69.43 Aligned_cols=55 Identities=15% Similarity=0.345 Sum_probs=49.8
Q ss_pred CCcceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccCcchhhchhhHHH
Q 000052 1169 EPFKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGMLDWKKLRDIREL 1224 (2592)
Q Consensus 1169 ~~~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM~~W~~l~~ipeL 1224 (2592)
..+..|||.+..|+.+|||+..+|++.++.|-.+++.+||+.|-.+|+++. +.+|
T Consensus 15 ~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dl 69 (78)
T 1wh2_A 15 KEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDV 69 (78)
T ss_dssp SSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHH
T ss_pred cccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHH
Confidence 346899999999999999999999999999999999999999999998876 5555
No 60
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.09 E-value=0.0085 Score=67.11 Aligned_cols=177 Identities=20% Similarity=0.210 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHc-CChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...++.+|.++-..++.....+...+-++.|.++|... ++.++..|+.+|..++ .+..+.+.+...+ .+..|+.+
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~l 104 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 104 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC-CHHHHHHH
Confidence 35678899999888888777777778888899998753 5689999999999998 5778888887655 77888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000052 2105 LHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2592)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~Ls 2182 (2592)
|.. .+..+..++.+|..++. +++..+..+..|++..|++++.+. ++.+|..++..|..+..+ +|..+..+.
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~~---~~~~~~~~~ 177 (210)
T 4db6_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG---GNEQKQAVK 177 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTS---CHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHHcC---CcHHHHHHH
Confidence 865 34566778889999985 566777888999999999999753 678999999999999763 344332221
Q ss_pred hhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHH
Q 000052 2183 RFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMA 2232 (2592)
Q Consensus 2183 KfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~ 2232 (2592)
. .+.-+..++++.+ + +.+.|......+.+++
T Consensus 178 ~-----------~g~i~~L~~ll~~--~------~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 178 E-----------AGALEKLEQLQSH--E------NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp H-----------TTHHHHHHHGGGC--S------CHHHHHHHHHHHHHHC
T ss_pred H-----------CCCHHHHHHHHhC--C------CHHHHHHHHHHHHHHh
Confidence 1 2222334455542 2 4456777777776654
No 61
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.04 E-value=0.15 Score=65.63 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=84.9
Q ss_pred cccccccccccccCCCC-CCChhhHHHHHHHHHc----CChhHHHHHHhhchhHHHHHHHHhhC-cchHHHHHHHHHHhh
Q 000052 2050 KEKLLPLFECFSVPFAP-DSNIPQLCLNVLSLLT----TCASCLEAMVADGSSLLLLLQMLHYA-PACREGVLHVLYALA 2123 (2592)
Q Consensus 2050 ~~~L~~LF~~L~~~~~~-~~~vq~~aL~VL~~ls----~n~~CVeaIA~~~~vl~~Ll~lL~~~-p~~~~~vL~~L~aL~ 2123 (2592)
.|.++.|..+|...... ...+++.|.-+|..++ .+.+..+.|...+ .+..|+.+|... .+....+.-+|..|+
T Consensus 329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G-~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-CLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc-cHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 34444555555432110 0137777888888777 5888888888755 778888888753 344566888889998
Q ss_pred -cchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2124 -STPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2124 -S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
.+++..+..++.|++..|.+++... ...+|..++..|..+..+
T Consensus 408 ~~~~~~~~~i~~~G~I~~Lv~LL~s~----~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 408 ARNPKDQEALWDMGAVSMLKNLIHSK----HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SSCHHHHHHHHHHTHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC
Confidence 4788888899999999999998653 578899999999999875
No 62
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.94 E-value=0.028 Score=72.15 Aligned_cols=341 Identities=15% Similarity=0.109 Sum_probs=202.5
Q ss_pred HhhCccchhhccccccccccccccccCCC---------CCCChhhHHHHHHHHHcCCh-hHHHHHHhhchhH--------
Q 000052 2037 LTSNPNLASIFSTKEKLLPLFECFSVPFA---------PDSNIPQLCLNVLSLLTTCA-SCLEAMVADGSSL-------- 2098 (2592)
Q Consensus 2037 L~~nP~La~~~~~~~~L~~LF~~L~~~~~---------~~~~vq~~aL~VL~~ls~n~-~CVeaIA~~~~vl-------- 2098 (2592)
+..+|.....+...|-++.|+++|..... +.+.++..|...|+.++..+ ++.+... +..++
T Consensus 56 ~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~-~~~~~~~l~~~~~ 134 (458)
T 3nmz_A 56 MSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRR-EIRVLHLLEQIRA 134 (458)
T ss_dssp HHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHH-HHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHH-HHHHHHHHHHhhh
Confidence 34577766667778889999999985422 23478888888887776432 2222211 11122
Q ss_pred --HHHHHHHhhCc---c-----hHH-------HHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCC-------CCCCcH
Q 000052 2099 --LLLLQMLHYAP---A-----CRE-------GVLHVLYALASTPELAWAAAKHGGVVYILELLLPS-------QQETPL 2154 (2592)
Q Consensus 2099 --~~Ll~lL~~~p---~-----~~~-------~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~-------~e~~~~ 2154 (2592)
..++.++.... + ..+ -+.-.|..++.+++.....++.||+..|+.+|... .+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~ 214 (458)
T 3nmz_A 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 214 (458)
T ss_dssp HHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred hhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCH
Confidence 23444554321 1 111 45666778877888888899999999999998410 011257
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHH---HhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHH
Q 000052 2155 QQRAAAASLLGKLVGQPMHGPRVAITL---ARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTM 2231 (2592)
Q Consensus 2155 ~~R~~aA~lL~kM~~DklhGPrV~~~L---sKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~ 2231 (2592)
..+..++..|..++.+. +..+..+ .-++| ..|.++.+ . +++.+......|..+
T Consensus 215 ~l~~~Aa~aL~nLa~~~---~~~k~~i~~~~GaIp-------------~LV~LL~s--~------~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGD---VANKATLCSMKGCMR-------------ALVAQLKS--E------SEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHCHHHHH-------------HHHHGGGC--S------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---cccHHHHHHcCCcHH-------------HHHHHHhC--C------CHHHHHHHHHHHHHH
Confidence 78889999999998753 2222222 12222 23455542 2 234455555555444
Q ss_pred HHHHHHHHhcCCccccc-CCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHH--HHHHHHHHHHhccCCCCCC
Q 000052 2232 ASDLYREQMKGRVVDWD-VPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLE--GLLDQYLSSIAATHYDTQA 2308 (2592)
Q Consensus 2232 ~~~~~~~Q~~~p~~~W~-lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~--~Ll~~~~~~~~~~~~~~~~ 2308 (2592)
+ |. -++. |+.+. +.+...++.+.+.+
T Consensus 271 s--------------~~~~~~~--------------------------------k~~I~~~GaI~~LV~lLl~s~----- 299 (458)
T 3nmz_A 271 S--------------WRADVNS--------------------------------KKTLREVGSVKALMECALEVK----- 299 (458)
T ss_dssp T--------------SSCCHHH--------------------------------HHHHHHTTHHHHHHHHHTTCC-----
T ss_pred h--------------cCCCHHH--------------------------------HHHHHHcCCHHHHHHHHhcCC-----
Confidence 2 11 0000 11111 23455555443321
Q ss_pred CCchhhHHHHHHHHHHHhcCchhhhhhc-cCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChh
Q 000052 2309 IDPELPLLLSAALVSLLRVHPALADHVG-YLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQ 2387 (2592)
Q Consensus 2309 ~d~~~l~llt~A~v~Ll~~~p~Lad~v~-~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2387 (2592)
+.++.+..+.|+-.|-...+....++. ..|-+|-|+.+|.+..+. ..
T Consensus 300 -~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~-----------------------------~~-- 347 (458)
T 3nmz_A 300 -KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT-----------------------------NT-- 347 (458)
T ss_dssp -SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS-----------------------------ST--
T ss_pred -CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc-----------------------------ch--
Confidence 233444445555555443445556666 789999999998643210 00
Q ss_pred hHhhhhHHHHHHHhh----CChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccchhHHHHHHH
Q 000052 2388 ERVRLSCLRVLHQLA----ASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRARDALVAQGL 2461 (2592)
Q Consensus 2388 ~~v~~~~l~vlh~ls----~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~~~lv~qal 2461 (2592)
..+.+.|..+|..|| .+....+.+.+.+. +|.|+..+...... .-||-+|..+-.. .++-.+..+
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~-----i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~----~~~~~~~i~ 418 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNC-----LQTLLQHLKSHSLTIVSNACGTLWNLSAR----NPKDQEALW 418 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHSS----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc-----HHHHHHHHcCCChHHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence 135677888888888 48888888887554 88999998865443 3778888887532 234455667
Q ss_pred hhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2462 KVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2462 ~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
+.|.|+.|.+||... . ...|-.+..+|..++.+
T Consensus 419 ~~G~I~~Lv~LL~s~----------------~-~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 419 DMGAVSMLKNLIHSK----------------H-KMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHTHHHHHHTTTTCS----------------S-HHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHhCC----------------C-HHHHHHHHHHHHHHHcC
Confidence 889999999999632 1 12466777888888763
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.89 E-value=0.082 Score=69.78 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhCccc----hhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNL----ASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLL 2101 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~L----a~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~L 2101 (2592)
++-+.-||.||-..+... ...+...+.++.|..+|... +..++..+...|..|+.+...-+.|. ..++..|
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~~I~--~g~ip~L 400 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE---HERVVKAASGALRNLAVDARNKELIG--KHAIPNL 400 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCSCHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhCChhHHHHHH--hCCHHHH
Confidence 456677888887654221 11233345577788888653 45789999999999987665445553 3477888
Q ss_pred HHHHhhC---------cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2102 LQMLHYA---------PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2102 l~lL~~~---------p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
+.+|... .+....++.+|..++. +++-.+..++.||+..|.+++.+.. ..+.++..|+.+|.-|..+
T Consensus 401 V~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~--~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN--RSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS--SCHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--CChHHHHHHHHHHHHHHcC
Confidence 8888643 1334557788887764 6788888899999999999997632 3567888899999999876
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.82 E-value=0.007 Score=69.64 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...++.+|.+++..++.-...+...+-++.|+.+|... ++.++..|+.+|..++. +.++.+.+...+ .+..|+.+
T Consensus 29 ~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~l 104 (252)
T 4db8_A 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 104 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC-CHHHHHHH
Confidence 35678888888876544444556667888899998763 46899999999999997 788888887755 77888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhcchHHH-HHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2105 LHY-APACREGVLHVLYALASTPELA-WAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~S~~~LV-kqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
|.. .++.+..++.+|..++..++.. ....+.|++..|+++|.+. ++.+|..++..|+.+..+
T Consensus 105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG 168 (252)
T ss_dssp GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTS
T ss_pred HcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC
Confidence 875 3456777899999999877766 7888999999999999653 678999999999999764
No 65
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.80 E-value=0.00063 Score=83.68 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCc------hHHHHHHHHHHHHHhhccccCCCCC
Q 000052 1539 NIDEEKLKRQYRKLAMKYHPDKNPE------GREKFLAVQKAYERLQATMQGLQGP 1588 (2592)
Q Consensus 1539 ~~~e~~IKkaYRkLa~kyHPDknp~------~~ekF~~I~~AYevLsd~~~~~~gp 1588 (2592)
..+..+++++|+++++++|||+.++ ..++|+.|.+||++|+|++.+..||
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd 448 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC----
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhcc
Confidence 4566799999999999999999985 4679999999999999987554444
No 66
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.71 E-value=0.44 Score=59.20 Aligned_cols=265 Identities=15% Similarity=0.084 Sum_probs=165.2
Q ss_pred hHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh------------CcchHHHHHHHHHHhhcchHHHHHHH-HcCC-
Q 000052 2072 QLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY------------APACREGVLHVLYALASTPELAWAAA-KHGG- 2137 (2592)
Q Consensus 2072 ~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~------------~p~~~~~vL~~L~aL~S~~~LVkqal-~~Gg- 2137 (2592)
..|+..|..++.+.+|-..|.+.+ .+..|+.+|.. .++....+..+|..|+..++-.+..+ ..||
T Consensus 50 ~~A~~aL~nls~d~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 128 (354)
T 3nmw_A 50 CPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128 (354)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcC-CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCc
Confidence 467899999999999999998866 77888888742 23455568888899997666556655 4566
Q ss_pred hhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccC
Q 000052 2138 VVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWT 2217 (2592)
Q Consensus 2138 vlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn 2217 (2592)
+..|+.+|... ++.+|..++..|.-+... ..++.+. ++.+.. +
T Consensus 129 Ip~LV~LL~s~----~~~v~~~A~~aL~nLs~~--~~~~~k~------------~i~~~G--~----------------- 171 (354)
T 3nmw_A 129 MRALVAQLKSE----SEDLQQVIASVLRNLSWR--ADVNSKK------------TLREVG--S----------------- 171 (354)
T ss_dssp HHHHHHGGGCS----CHHHHHHHHHHHHHHHTT--CCHHHHH------------HHHHTT--H-----------------
T ss_pred HHHHHHHHCCC----CHHHHHHHHHHHHHHhcc--CCHHHHH------------HHHHCC--C-----------------
Confidence 88899988642 578888898888887542 1122211 111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHHHH
Q 000052 2218 PAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLS 2297 (2592)
Q Consensus 2218 ~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~ 2297 (2592)
+..+++
T Consensus 172 --------------------------------------------------------------------------Ip~Lv~ 177 (354)
T 3nmw_A 172 --------------------------------------------------------------------------VKALME 177 (354)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011111
Q ss_pred HHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhc-cCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccCC
Q 000052 2298 SIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVG-YLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYESD 2376 (2592)
Q Consensus 2298 ~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~-~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2376 (2592)
.+.+.+ |.++.+-.+.|+-.|-...+.....+. ..|-+|-|+.+|.+.++.
T Consensus 178 lL~~~~------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~---------------------- 229 (354)
T 3nmw_A 178 CALEVK------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT---------------------- 229 (354)
T ss_dssp HHHHCC------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS----------------------
T ss_pred HHhcCC------CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc----------------------
Confidence 111100 111222223333333222333334455 679999999998643210
Q ss_pred CCCCCCCCChhhHhhhhHHHHHHHhhC----ChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccc
Q 000052 2377 DGSAQPVQTPQERVRLSCLRVLHQLAA----STTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGN 2450 (2592)
Q Consensus 2377 ~~~~~~~~~~~~~v~~~~l~vlh~ls~----s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~ 2450 (2592)
.. ..+.+.|..+|..||. +....+.+.+.+. +|.|+..++..... .-|+-+|..+-..
T Consensus 230 -------~~--~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~-----i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-- 293 (354)
T 3nmw_A 230 -------NT--LAIIESGGGILRNVSSLIATNEDHRQILRENNC-----LQTLLQHLKSHSLTIVSNACGTLWNLSAR-- 293 (354)
T ss_dssp -------SC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-----HHHHHHHTTCSCHHHHHHHHHHHHHHTSS--
T ss_pred -------cc--HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC-----HHHHHHHHcCCChHHHHHHHHHHHHHhCC--
Confidence 00 0356778888888884 8888888887544 89999998865443 2777888877532
Q ss_pred cchhHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2451 RARDALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2451 r~~~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
.++-.+..++.|.|+.|.+||... . ...|..+..+|..++.+
T Consensus 294 --~~~~~~~i~~~G~i~~Lv~LL~s~----------------~-~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 294 --NPKDQEALWDMGAVSMLKNLIHSK----------------H-KMIAMGSAAALRNLMAN 335 (354)
T ss_dssp --CHHHHHHHHHTTHHHHHHTTTTCS----------------S-HHHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHCCCHHHHHHHHhCC----------------C-HHHHHHHHHHHHHHHcC
Confidence 234455667899999999999632 1 12466778889888874
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.70 E-value=0.0071 Score=67.72 Aligned_cols=136 Identities=24% Similarity=0.222 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHc-CChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls-~n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
...++.+|.|+...++.....+...+.++.|+.+|... +..++..|..+|..++ .+..+.+.+...+ ++..|+.+
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~l 146 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQL 146 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC---cHHHHHHHHHHHHHHHcCCHHHHHHHHHcC-cHHHHHHH
Confidence 35678899999988888777777788889999998753 5689999999999998 5677777777644 78888888
Q ss_pred Hhh-CcchHHHHHHHHHHhhcc-hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhc
Q 000052 2105 LHY-APACREGVLHVLYALAST-PELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVG 2169 (2592)
Q Consensus 2105 L~~-~p~~~~~vL~~L~aL~S~-~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~ 2169 (2592)
|.. .+..+..++.+|..++.. ++..+...+.|++..|++++.+. ++.+|..++.+|+.+..
T Consensus 147 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE----NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHhc
Confidence 875 345667788999999876 67777888899999999998753 68899999999998864
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.63 E-value=0.38 Score=59.76 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhCccchhhcc-ccccccccccccccCCCC-CCChhhHHHHHHHHHcC----ChhHHHHHHhhchhHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFS-TKEKLLPLFECFSVPFAP-DSNIPQLCLNVLSLLTT----CASCLEAMVADGSSLLL 2100 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~-~~~~L~~LF~~L~~~~~~-~~~vq~~aL~VL~~ls~----n~~CVeaIA~~~~vl~~ 2100 (2592)
+.++.||.||=..+++....+. ..|.++.|..+|...... ...+++.|.-+|..++. +.+..+.|...+ .+..
T Consensus 189 ~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g-~i~~ 267 (354)
T 3nmw_A 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN-CLQT 267 (354)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT-HHHH
T ss_pred HHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC-CHHH
Confidence 4567788888765544433443 567888888888653211 11478888888888874 888888887755 7888
Q ss_pred HHHHHhhC-cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHH
Q 000052 2101 LLQMLHYA-PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVA 2178 (2592)
Q Consensus 2101 Ll~lL~~~-p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~ 2178 (2592)
|+.+|... .+....+.-+|..|+. +++-.+..++.|++..|.+++... ...+|..++..|..+..+ ...+++
T Consensus 268 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~----~~~i~~~A~~aL~nL~~~--~~~~~~ 341 (354)
T 3nmw_A 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK----HKMIAMGSAAALRNLMAN--RPAKYK 341 (354)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTT--CCGGGC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcC--CHHHHh
Confidence 88888753 3445668889999984 778888899999999999998653 578899999999999886 444444
Q ss_pred HH
Q 000052 2179 IT 2180 (2592)
Q Consensus 2179 ~~ 2180 (2592)
.+
T Consensus 342 ~~ 343 (354)
T 3nmw_A 342 DA 343 (354)
T ss_dssp --
T ss_pred hh
Confidence 33
No 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.84 E-value=0.048 Score=66.22 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhCccchhhcccccccccccc-ccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFE-CFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQ 2103 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~-~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~ 2103 (2592)
-..++..|.+++.+-. -+..+...|.+++|+. +|.. +++.|+..|..+|..++. |..|-+.+...+ ++..|+.
T Consensus 57 k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g-~l~~Ll~ 131 (296)
T 1xqr_A 57 REGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG-ALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHH
Confidence 4567888888887533 3344556678888999 8875 467899999999988876 456877777655 8899999
Q ss_pred HHhhC--cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2104 MLHYA--PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2104 lL~~~--p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
+|... +..+..++-+|..++. ++...+..+..||+..|+.+|.+. .+.+|..+|-+|+.++..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence 99854 3556678888888875 566677778899999999998753 688999999999998764
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.25 E-value=0.047 Score=66.27 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
.+.+..+|.|+.+++|.....+...+.+++|..+|... ++..++..|+-.|+.++. +....+.+...+ .+..|+.+
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g-gi~~L~~l 175 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLD-GFSVLMRA 175 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC-CHHHHHHH
Confidence 46789999999999999988888889999999999752 245789999999999885 567777777644 67888888
Q ss_pred HhhC-cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 000052 2105 LHYA-PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLA 2182 (2592)
Q Consensus 2105 L~~~-p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~Ls 2182 (2592)
|+.. +.....+.-+|..|+. +++..+..++.|++..|+++|... .+.+|..++..|+.+..+ ++.......
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~----d~~v~~~al~aL~~l~~~---~~~~~~~~~ 248 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE----HSPFHEHVLGALCSLVTD---FPQGVRECR 248 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC----CSTHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC----ChhHHHHHHHHHHHHHhC---ChhHHHHHh
Confidence 8753 3445557777777765 467888889999999999999753 468899999999999886 676665554
Q ss_pred h
Q 000052 2183 R 2183 (2592)
Q Consensus 2183 K 2183 (2592)
+
T Consensus 249 ~ 249 (296)
T 1xqr_A 249 E 249 (296)
T ss_dssp C
T ss_pred c
Confidence 4
No 71
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=94.64 E-value=0.022 Score=58.61 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=45.8
Q ss_pred cceeeeecCCCcccccccHHHHHHHhhcCCcCcCCceecccC-------c-chhhchhh
Q 000052 1171 FKEWMFIDKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGM-------L-DWKKLRDI 1221 (2592)
Q Consensus 1171 ~KeWyY~~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM-------~-~W~~l~~i 1221 (2592)
++.|||.+..|+.+|||+..+|.+.+++|-.+.+-+||+.+- + .|.+++++
T Consensus 15 e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel 73 (100)
T 3k3v_A 15 ESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGEL 73 (100)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHH
T ss_pred cceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHH
Confidence 689999999999999999999999999999999999999753 2 58888776
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.26 E-value=6.7 Score=53.30 Aligned_cols=372 Identities=14% Similarity=0.126 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccc-cccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLF-ECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF-~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
..+..+|..|+.--|++...+=-.....++| ..+.. ..+..+...+|+.++..+-++.|=+.|. ..++..|...+
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~--~~~~~~~~a~L~lLsaACi~~~cR~~I~--~~~~~~L~~~l 305 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE--EQDLQFTKELLRLLSSACIDETMRTYIT--ENYLQLLERSL 305 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS--SCCHHHHHHHHHHHHHHCCSHHHHHHHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc--ccchHHHHHHHHHHHHHhCCcHHHHHHH--HhHHHHHHHHh
Confidence 3445666677777777554432222222222 12211 2344577999999999999999977774 34567777777
Q ss_pred hhCcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC
Q 000052 2106 HYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFL 2185 (2592)
Q Consensus 2106 ~~~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfL 2185 (2592)
.. ...+..++-+|..|.+.++.-..-+.. +.-.+.+.|++. ....|..+++-|+-++-| |.|+..|..=
T Consensus 306 ~~-~~ir~lAavvL~KL~~~~~~~~~si~~-La~~~~~~L~~~----~~~~~~~AvEgLaYLSl~----~~VKe~L~~d- 374 (778)
T 3opb_A 306 NV-EDVQIYSALVLVKTWSFTKLTCINLKQ-LSEIFINAISRR----IVPKVEMSVEALAYLSLK----ASVKIMIRSN- 374 (778)
T ss_dssp TS-GGGHHHHHHHHHHHTGGGTCTTCCHHH-HHHHHHHHTTTC----CHHHHHHHHHHHHHHTTS----SHHHHHHHHC-
T ss_pred cc-HHHHHHHHHHHHHHhcCCCCCcCcHHH-HHHHHHHHHhcC----CccHHHHHHHHHHHHhCC----HHHHHHHHhC-
Confidence 54 456666777777777644321000000 112334455553 223388899999888765 6677666551
Q ss_pred cHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEE
Q 000052 2186 PDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQV 2265 (2592)
Q Consensus 2186 P~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~V 2265 (2592)
..|+ +..|.++.. ++ +.+.---+-.++ .+....+ |. +..|-.
T Consensus 375 -~~~L--------~~Lv~llk~----~~---d~s~~Ygal~IL--------~NLt~~~------~~-------~~~e~~- 416 (778)
T 3opb_A 375 -ESFT--------EILLTMIKS----QK---MTHCLYGLLVIM--------ANLSTLP------EE-------XXXXXX- 416 (778)
T ss_dssp -HHHH--------HHHHHHHTT----TC---CTTHHHHHHHHH--------HHTTCCC------CC-------CCCCCC-
T ss_pred -HHHH--------HHHHHHHhC----CC---CchHHHHHHHHH--------HHhcCCC------cc-------cchhhh-
Confidence 1111 112233322 11 111111222222 2222211 11 111100
Q ss_pred eeeeehhhccCCCCCCCCchHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHH
Q 000052 2266 GGIYVRLFLKDPKFPLRNPKRFLEGLLDQYLSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLV 2345 (2592)
Q Consensus 2266 GGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~ 2345 (2592)
+=.||+=|.+... |++ +.-|. .+..++-+.-++. ..|.-.|-+|.|+
T Consensus 417 ~l~~Lk~~A~~~~-----p~~--------------------~~~d~---~~~~~~~v~~~~~-----~~l~eaGvIp~Lv 463 (778)
T 3opb_A 417 XXXXXXXXXXXXX-----PAA--------------------DKVGA---EKAAKEDILLFNE-----KYILRTELISFLK 463 (778)
T ss_dssp -------------------------------------------CCT---HHHHHHHHHHHHH-----HHTTTTTHHHHHH
T ss_pred hhhhhhhhccccC-----ccc--------------------Ccccc---cccchHHHHHHHH-----HHHHHCcCHHHHH
Confidence 2234444443321 111 11111 1122222222221 4456668899999
Q ss_pred HHHhhcCcccccchhhhhcCCCcccccccCCCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHH
Q 000052 2346 AAVAYEGRRETMSTEEVKNGNSEADRTYESDDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPIL 2425 (2592)
Q Consensus 2346 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l 2425 (2592)
.++.+.+ +.++..++++|+.||.+..|-..+.+-+. +++|
T Consensus 464 ~Ll~S~s-----------------------------------~~~re~A~~aL~nLS~d~~~R~~lvqqGa-----l~~L 503 (778)
T 3opb_A 464 REMHNLS-----------------------------------PNCKQQVVRIIYNITRSKNFIPQLAQQGA-----VKII 503 (778)
T ss_dssp HHGGGSC-----------------------------------HHHHHHHHHHHHHHHTSGGGHHHHHHTTH-----HHHH
T ss_pred HHHcCCC-----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHCCC-----HHHH
Confidence 8876532 13567899999999999999999998755 7778
Q ss_pred HHHhcccCc-----hHHHHHHHHHHhhccccchhHHH--HHHHhhChHHHHHHhhhcccCCCCCCcccccccccc-hhhh
Q 000052 2426 MKAIGWQGG-----SILALETLKRVVVAGNRARDALV--AQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESE-ASIG 2497 (2592)
Q Consensus 2426 ~~~m~~~~~-----~~la~e~L~r~~~~~~r~~~~lv--~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~-a~~~ 2497 (2592)
+........ ...|+.+|.|+....| +.++ .|.. .|-|+.|++||.-. .+..| ..--++.+ ....
T Consensus 504 L~lL~s~~~~~~~~k~~AA~ALArLlis~n---p~~~f~~~~~-~~aI~pLv~LL~~~-~~~~~---~~l~~~~~~~~l~ 575 (778)
T 3opb_A 504 LEYLANKQDIGEPIRILGCRALTRMLIFTN---PGLIFKKYSA-LNAIPFLFELLPRS-TPVDD---NPLHNDEQIKLTD 575 (778)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHTSC---HHHHSSSSCS-TTHHHHHHHTSCCS-SSCSS---CC---CCCCCHHH
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHhcCC---HHHHcCCCcc-ccchHHHHHHcCCC-CCccc---ccccccccccHHH
Confidence 887766532 3489999999986432 3333 1111 38899999999621 01011 00000001 1123
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHH-HHhcCchhhhhc
Q 000052 2498 RVLAIEVLHAFAAEGAH-CSKVRD-ILSASDVWSAYK 2532 (2592)
Q Consensus 2498 ra~~V~~Lkam~~~~~~-G~~V~~-iL~~s~vW~~Yk 2532 (2592)
+..+..||-.|+..+.. |+.++. |+....+|..--
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 55666777778886543 666655 444336887655
No 73
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.87 E-value=0.61 Score=54.87 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcC-ChhHHHHHHhhchhHHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTT-CASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~-n~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
..+..++.++-..++.-...+...|.+++|.++|.. ++..+|..|...|..++. +.++-..|+..+ .+..|+.+|
T Consensus 28 ~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s---~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G-aI~~Lv~lL 103 (233)
T 3tt9_A 28 SAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV---QNEDVQRAVCGALRNLVFEDNDNKLEVAELN-GVPRLLQVL 103 (233)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC-CHHHHHHHH
Confidence 456778999888887777677778889999999976 357899999999999996 788888898766 788999999
Q ss_pred hh--CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhc----CC--------CCCCcHHHHHHHHHHHHHHhcCC
Q 000052 2106 HY--APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLL----PS--------QQETPLQQRAAAASLLGKLVGQP 2171 (2592)
Q Consensus 2106 ~~--~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~----~~--------~e~~~~~~R~~aA~lL~kM~~Dk 2171 (2592)
++ .++....+.-+|+.|++.++.- ..+..+|+.-|++++. .. .....+.++.-++..|.-|..
T Consensus 104 ~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss-- 180 (233)
T 3tt9_A 104 KQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS-- 180 (233)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT--
T ss_pred ccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc--
Confidence 75 3455666778889998766543 3344467877877542 10 112467899999999999876
Q ss_pred CCChHHHHHHHh
Q 000052 2172 MHGPRVAITLAR 2183 (2592)
Q Consensus 2172 lhGPrV~~~LsK 2183 (2592)
.++..|..+..
T Consensus 181 -~~~~~R~~~r~ 191 (233)
T 3tt9_A 181 -AGADGRKAMRR 191 (233)
T ss_dssp -SCHHHHHHHHT
T ss_pred -CCHHHHHHHHH
Confidence 35666655543
No 74
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=90.46 E-value=3.8 Score=55.92 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhCccchhh--cc--ccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHh-hchhHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASI--FS--TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVA-DGSSLLLL 2101 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~--~~--~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~-~~~vl~~L 2101 (2592)
..++.+|..+.+..|..... .. -..-++.++.+|.. ++..|+..|+..+..+..... +.+.. ...++..+
T Consensus 146 ~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l 220 (852)
T 4fdd_A 146 EGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENL 220 (852)
T ss_dssp HHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 45778888888877664321 00 11234556666653 356788999998876654322 11111 12345555
Q ss_pred HHHHhh-CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHH
Q 000052 2102 LQMLHY-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAI 2179 (2592)
Q Consensus 2102 l~lL~~-~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~ 2179 (2592)
+.++.. .++.+..++++|..++. .++.+..-+. +.+.+++.++.+ ....+|..+++.+..+...+.....+.-
T Consensus 221 ~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~----~~~~vr~~a~e~l~~l~~~~~~~~~~~~ 295 (852)
T 4fdd_A 221 FALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQD----QDENVALEACEFWLTLAEQPICKDVLVR 295 (852)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHHTTSTTHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccC----CcHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 555543 34566778888888775 3343333222 345566666654 3578999999999998876532111222
Q ss_pred HHHhhCcHHHHHHHhcCc
Q 000052 2180 TLARFLPDGLVSVIRDGP 2197 (2592)
Q Consensus 2180 ~LsKfLP~~fv~amrdsP 2197 (2592)
.+.+++| .++..|..+.
T Consensus 296 ~~~~l~p-~ll~~l~~~e 312 (852)
T 4fdd_A 296 HLPKLIP-VLVNGMKYSD 312 (852)
T ss_dssp THHHHHH-HHHHHTSCCH
T ss_pred HHHHHHH-HHHHHcCCcH
Confidence 3444443 3456666554
No 75
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=86.67 E-value=7.5 Score=51.73 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=147.8
Q ss_pred HHHHHHHHHHhcHHH--HHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhhccch
Q 000052 501 GFVACLRRLLTSRTA--ASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKS 578 (2592)
Q Consensus 501 ~~~~aLrRL~as~~g--f~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs 578 (2592)
..+|+|+.|+..|.. =.++...|..+.++|.+|.-.+|-|-.+|+.+|+.|..+ + .+-.
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~---n----------------~~iQ 201 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS---N----------------GAIQ 201 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT---C----------------HHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC---C----------------HHHH
Confidence 468999999999987 557777899999999999999999999999999999862 1 1222
Q ss_pred hcccchhhHHHHHHhhcCCCC--hhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCC-------
Q 000052 579 VLFSQQGYLIVLVNRLRPMSV--SPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHP------- 649 (2592)
Q Consensus 579 ~ll~~~~f~~~L~~~l~~~~~--~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf~Lf~hp------- 649 (2592)
-++.-++-++.|++.++.-|. |+.|+.=+|.++.-.+.. .+.....|-+. +.-..|-.||..+
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N~sNQ~~FrEt-----~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---NNSNQNFFKEG-----SYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---CHHHHHHHHHT-----TCGGGGGGGGCCCSCSSCCC
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---CHHHHHHHHHc-----CCHHHHHHHhCCCccccccH
Confidence 456667778999999997444 899999999999999843 34445555542 2233444555533
Q ss_pred --hhhHHHHHHHHHHHHHhhcH-HHHHHHHHHHHhhcHHHHHHHHHhcCCC--CchhHHHHHHHHHHhcCChhHHhhhhh
Q 000052 650 --AESVRETVAVIMRTIAEEDA-IAAESMRDAALRDGALLRHLLHAFFLPA--GERREVSRQLVALWADSYQPALDLLSR 724 (2592)
Q Consensus 650 --~~~i~~~aglimrai~Ee~~-~~a~~mq~~AL~eGallrHL~~Alf~~~--~~~r~lsr~LV~lW~~~~~~a~~LL~R 724 (2592)
..+-+.++=.|+|.+...+. ....+.=+.|+.++.++.+|..=+|.+. .+-+.-+-..+|-=+.+|+..++.+..
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 22445567788999888854 4455566778889999999999888764 344666777777788899999988876
Q ss_pred c
Q 000052 725 V 725 (2592)
Q Consensus 725 i 725 (2592)
+
T Consensus 354 ~ 354 (651)
T 3grl_A 354 V 354 (651)
T ss_dssp C
T ss_pred c
Confidence 5
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.39 E-value=1.1e+02 Score=40.56 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHh
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLH 2106 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~ 2106 (2592)
.++.-++.+++..+|++...+.+. |..-|.. +++.++..||+.|..+.. .+-++ .++..+..++.
T Consensus 88 rl~Yl~~~~~~~~~~e~~~l~in~-----l~kDL~~---~n~~vr~lAL~~L~~i~~-~~~~~------~l~~~l~~~L~ 152 (618)
T 1w63_A 88 RIGYLGAMLLLDERQDVHLLMTNC-----IKNDLNH---STQFVQGLALCTLGCMGS-SEMCR------DLAGEVEKLLK 152 (618)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHH-----HHHHHSC---SSSHHHHHHHHHHHHHCC-HHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHH-----HHHhcCC---CCHhHHHHHHHHHHhcCC-HHHHH------HHHHHHHHHHc
Confidence 345668899999998876654432 2223332 467899999999998874 33222 24455666665
Q ss_pred h-CcchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhh
Q 000052 2107 Y-APACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARF 2184 (2592)
Q Consensus 2107 ~-~p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKf 2184 (2592)
+ .|..+..+.-++..+.. +++++. +.+..+.+++++ .++.++..++.+|..+.. +.|.....+.++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D----~d~~V~~~Al~~L~~i~~---~~~~~~~~~~~~ 220 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNE----KNHGVLHTSVVLLTEMCE---RSPDMLAHFRKL 220 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTC----CCHHHHHHHHHHHHHHCC---SHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCC----CCHhHHHHHHHHHHHHHH---hChHHHHHHHHH
Confidence 4 45556667767766664 454442 445556666654 478999999999999865 345543344455
Q ss_pred Cc
Q 000052 2185 LP 2186 (2592)
Q Consensus 2185 LP 2186 (2592)
+|
T Consensus 221 v~ 222 (618)
T 1w63_A 221 VP 222 (618)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 77
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=84.37 E-value=2.6 Score=49.55 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=80.5
Q ss_pred ccccccccccCCCCCC--ChhhHHHHHHHHHc-CChhHHHHHHhhchhHHHHHHHHhhC-cchHHHHHHHHHHhhc-chH
Q 000052 2053 LLPLFECFSVPFAPDS--NIPQLCLNVLSLLT-TCASCLEAMVADGSSLLLLLQMLHYA-PACREGVLHVLYALAS-TPE 2127 (2592)
Q Consensus 2053 L~~LF~~L~~~~~~~~--~vq~~aL~VL~~ls-~n~~CVeaIA~~~~vl~~Ll~lL~~~-p~~~~~vL~~L~aL~S-~~~ 2127 (2592)
++.+.++|... ++ .++..+...|..++ .+...-..|...+ .+..|+.+|.+. ++....+..+|..|+. +++
T Consensus 10 i~~lV~lL~s~---~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G-~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 10 LERAVSMLEAD---HMLPSRISAAATFIQHECFQKSEARKRVNQLR-GILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp HHHHHHTCCSS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCC---CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 34556666542 33 67777778888877 4555556666655 678888888753 4566678888899987 566
Q ss_pred HHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2128 LAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2128 LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
--....++||+..|+++|..+ ....+|..++.+|--|...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~---~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQT---RDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcC
Confidence 667778899999999999742 2578899999899888754
No 78
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=80.95 E-value=2.4 Score=57.58 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHh--hchhHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVA--DGSSLLLLLQM 2104 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~--~~~vl~~Ll~l 2104 (2592)
+.+.++|.|+ ..++.....+...|.+..|..+|.........++..|...|..++-+...-..+.. .-.++..|+.+
T Consensus 475 e~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~L 553 (778)
T 3opb_A 475 QQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFEL 553 (778)
T ss_dssp HHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHT
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHH
Confidence 5677888888 56688888899999999999999764211123778888888877632221112221 11477889988
Q ss_pred HhhCcch---------------HHHHHHHHHHhhcch-----HHHHHHHHc-CChhhhHHhhcCCCCCCcHHHHHHHHHH
Q 000052 2105 LHYAPAC---------------REGVLHVLYALASTP-----ELAWAAAKH-GGVVYILELLLPSQQETPLQQRAAAASL 2163 (2592)
Q Consensus 2105 L~~~p~~---------------~~~vL~~L~aL~S~~-----~LVkqal~~-GgvlYLL~lL~~~~e~~~~~~R~~aA~l 2163 (2592)
|+..|+. .-.+|-.|..|++.+ ++-+..++. |++..|.+++... +..+|..++++
T Consensus 554 L~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~VrrAA~el 629 (778)
T 3opb_A 554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQRSTLEL 629 (778)
T ss_dssp SCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHHHHHHHH
T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHHHHHHHH
Confidence 8733332 224666777788764 455556774 8899999987642 57899999999
Q ss_pred HHHHhcCC
Q 000052 2164 LGKLVGQP 2171 (2592)
Q Consensus 2164 L~kM~~Dk 2171 (2592)
+.-|+.++
T Consensus 630 I~NL~~~~ 637 (778)
T 3opb_A 630 ISNMMSHP 637 (778)
T ss_dssp HHHHHTSG
T ss_pred HHHHhCCc
Confidence 99999864
No 79
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=77.90 E-value=90 Score=42.53 Aligned_cols=240 Identities=15% Similarity=0.160 Sum_probs=127.3
Q ss_pred CChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHHhcCchhhHHHhhcccccCcccc
Q 000052 2136 GGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVIRDGPGEAVVSALEQTTETPELV 2215 (2592)
Q Consensus 2136 GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELI 2215 (2592)
|...||+.++... ...++.+|..++-+|++.....- . -+|+.--..+|+. ++..+. .+
T Consensus 45 ~~~~~l~~il~~~-~~~~~~vR~~a~~~Lkn~i~~~w-~---------~~~~~~~~~ik~~----ll~~l~--~~----- 102 (852)
T 4fdd_A 45 DFNNYLIFVLTKL-KSEDEPTRSLSGLILKNNVKAHF-Q---------NFPNGVTDFIKSE----CLNNIG--DS----- 102 (852)
T ss_dssp HHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHTTTSG-G---------GCCHHHHHHHHHH----HHTTTT--CS-----
T ss_pred CHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHHHcc-C---------CCCHHHHHHHHHH----HHHHHc--CC-----
Confidence 4456888888742 23478999999999999876421 1 1566555666644 233342 11
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcchhhhcccCCCcEEeeeeehhhccCCCCCCCCchHHHHHHHHHH
Q 000052 2216 WTPAMAASLSAQISTMASDLYREQMKGRVVDWDVPEQASAQQEMRDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLLDQY 2295 (2592)
Q Consensus 2216 Wn~~mR~~v~~~i~~~~~~~~~~Q~~~p~~~W~lPe~~~~~~~l~~El~VGGVYlRLFl~nP~w~LR~Pk~FL~~Ll~~~ 2295 (2592)
+...|..+...|+.++..- +...| |+ |+...
T Consensus 103 -~~~vr~~~a~~i~~ia~~~-------~~~~w--p~---------------------------------------ll~~L 133 (852)
T 4fdd_A 103 -SPLIRATVGILITTIASKG-------ELQNW--PD---------------------------------------LLPKL 133 (852)
T ss_dssp -SHHHHHHHHHHHHHHHHHT-------TTTTC--TT---------------------------------------HHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhc-------Ccccc--HH---------------------------------------HHHHH
Confidence 2457888888888776641 11223 11 33333
Q ss_pred HHHHhccCCCCCCCCchhhHHHHHHHHHHHhcCchhhhhhccCCChHHHHHHHhhcCcccccchhhhhcCCCcccccccC
Q 000052 2296 LSSIAATHYDTQAIDPELPLLLSAALVSLLRVHPALADHVGYLGYVPKLVAAVAYEGRRETMSTEEVKNGNSEADRTYES 2375 (2592)
Q Consensus 2296 ~~~~~~~~~~~~~~d~~~l~llt~A~v~Ll~~~p~Lad~v~~lG~~pkl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2375 (2592)
++.+... |....+....++-.++...|...+.-....+++.++..+-..- .
T Consensus 134 ~~~l~~~-------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-----~----------------- 184 (852)
T 4fdd_A 134 CSLLDSE-------DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-----K----------------- 184 (852)
T ss_dssp HHHHSCS-------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-----T-----------------
T ss_pred HHHHcCC-------CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-----c-----------------
Confidence 3443321 1122223333444444444433222111233444444432110 0
Q ss_pred CCCCCCCCCChhhHhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhccccch
Q 000052 2376 DDGSAQPVQTPQERVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVAGNRAR 2453 (2592)
Q Consensus 2376 ~~~~~~~~~~~~~~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~~~r~~ 2453 (2592)
.+...||..|+..|..+..... +.+.. .-+.+++.|.+........ ..||++|.++.+. .
T Consensus 185 ---------~~~~~vR~~A~~aL~~~~~~~~--~~~~~---~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~----~ 246 (852)
T 4fdd_A 185 ---------HSSPKIRSHAVACVNQFIISRT--QALML---HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV----R 246 (852)
T ss_dssp ---------CSSHHHHHHHHHHHHTTTTTTC--HHHHT---SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH----C
T ss_pred ---------CCCHHHHHHHHHHHHHHHhccc--HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----C
Confidence 0113588899988876654321 11211 1123567777766544322 3789999998864 2
Q ss_pred hHHHHHHHhhChHHHHHHhhhcccCCCCCCcccccccccchhhhHHHHHHHHHHHHhc
Q 000052 2454 DALVAQGLKVGLVDVLLGLLDWRAGGRNGLSSQMKWNESEASIGRVLAIEVLHAFAAE 2511 (2592)
Q Consensus 2454 ~~lv~qal~~~Lv~~LL~lL~~~~~~~~gl~~~~~~~~~~a~~~ra~~V~~Lkam~~~ 2511 (2592)
+..+..-++ ++++++++++... + ...|..++++|..++..
T Consensus 247 ~~~~~~~l~-~l~~~l~~~~~~~----------------~-~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 247 MDRLLPHMH-NIVEYMLQRTQDQ----------------D-ENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHGGGHH-HHHHHHHHHHTCS----------------S-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHccCC----------------c-HHHHHHHHHHHHHHhcc
Confidence 333333333 5888888888521 1 13477788888888753
No 80
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.97 E-value=12 Score=42.96 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhCccchhhccccccccccccccccCC--CCCCChhhHHHHHHHHHcCChhHHHHHHh-hchhHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPF--APDSNIPQLCLNVLSLLTTCASCLEAMVA-DGSSLLLLLQ 2103 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~--~~~~~vq~~aL~VL~~ls~n~~CVeaIA~-~~~vl~~Ll~ 2103 (2592)
.+++.+|..++..+|.+.. . .+..++..|.... ..+..|...++.++..++..- -..+.. ...++..++.
T Consensus 33 ~~a~~~L~~l~~~~~~~~~--~---~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l--~~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLEN--G---EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL--AKRFSNYASACVPSLLE 105 (242)
T ss_dssp HHHHHHHHHHHHHCSSBCC--C---CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCC--C---CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHH
Confidence 5688899999998776432 1 1223444332211 245678889999888877211 111111 1235566666
Q ss_pred HHhhC-cchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChH--HHHH
Q 000052 2104 MLHYA-PACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPR--VAIT 2180 (2592)
Q Consensus 2104 lL~~~-p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPr--V~~~ 2180 (2592)
.+... +..+..+..+|..++....+ .+ .+..|+..|.+ .++++|..++..|+.+... +||. ....
T Consensus 106 ~l~d~~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~~----~~~~vr~~~l~~l~~~l~~--~~~~~~~~~~ 173 (242)
T 2qk2_A 106 KFKEKKPNVVTALREAIDAIYASTSL-EA-----QQESIVESLSN----KNPSVKSETALFIARALTR--TQPTALNKKL 173 (242)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTT--CCGGGCCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHcC----CChHHHHHHHHHHHHHHHH--cCCCCccHHH
Confidence 66543 34556666777666653211 11 12223444443 3789999999999998765 6665 2345
Q ss_pred HHhhCcHHHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHHHHHHHH
Q 000052 2181 LARFLPDGLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQISTMASDLY 2236 (2592)
Q Consensus 2181 LsKfLP~~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~~~~~~~ 2236 (2592)
+..++|. ++..+.|. +.+.|.....++..++..+-
T Consensus 174 l~~l~p~-l~~~l~D~--------------------~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 174 LKLLTTS-LVKTLNEP--------------------DPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHH-HHHHHTSS--------------------CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HHHHhcCC--------------------ChHHHHHHHHHHHHHHHHcC
Confidence 5555553 34444433 22456666666666665543
No 81
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=75.71 E-value=2.3e+02 Score=38.06 Aligned_cols=129 Identities=11% Similarity=0.100 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCccchhhcccccccc-cccccccc-CCCCCCChhhHHHHHHHHHcCChhHHHH--------------
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLL-PLFECFSV-PFAPDSNIPQLCLNVLSLLTTCASCLEA-------------- 2090 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~-~LF~~L~~-~~~~~~~vq~~aL~VL~~ls~n~~CVea-------------- 2090 (2592)
..++++|..+....|..-. .++. .++.++.. -...+..+...|++.+..++........
T Consensus 242 ~~a~~~l~~l~~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 242 AAAFGCLCKIMSKYYTFMK-----PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCH-----HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 3457777777777664211 1222 33333211 1123467889999998877655322110
Q ss_pred -HHh-hchhHHHHHHHHhhC--------cchHHHHHHHHHHhhcc--hHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHH
Q 000052 2091 -MVA-DGSSLLLLLQMLHYA--------PACREGVLHVLYALAST--PELAWAAAKHGGVVYILELLLPSQQETPLQQRA 2158 (2592)
Q Consensus 2091 -IA~-~~~vl~~Ll~lL~~~--------p~~~~~vL~~L~aL~S~--~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~ 2158 (2592)
+.. ...++..++..|... +..+..+.++|..++.. ..++. ..+.++...|.+ .....|.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~-----~l~~~l~~~l~~----~~~~~r~ 387 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITA----DNWRNRE 387 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTC----SSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH-----HHHHHHHHHcCC----CChhHHH
Confidence 000 123555666666532 23444566666655531 11111 122234444433 3578999
Q ss_pred HHHHHHHHHhc
Q 000052 2159 AAASLLGKLVG 2169 (2592)
Q Consensus 2159 ~aA~lL~kM~~ 2169 (2592)
.++..|+.+..
T Consensus 388 ~a~~~l~~i~~ 398 (861)
T 2bpt_A 388 AAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHHHHc
Confidence 99999999874
No 82
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=75.32 E-value=38 Score=41.77 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=39.0
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhc
Q 000052 2389 RVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVA 2448 (2592)
Q Consensus 2389 ~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~ 2448 (2592)
.+|.+++..|..++.+... +.+ .-.-+.++|.+.+.+..+... .-||.+|.++...
T Consensus 381 ~~r~aal~~l~~l~~~~~~-~~~---~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEP-SQL---KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCT-TTT---CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcH-HHH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999974210 111 112367899999999775443 3888999888763
No 83
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.46 E-value=57 Score=41.61 Aligned_cols=96 Identities=7% Similarity=-0.035 Sum_probs=53.8
Q ss_pred CCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHh
Q 000052 2066 PDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILEL 2144 (2592)
Q Consensus 2066 ~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~l 2144 (2592)
+++.|+..+++.|..+...-.- .... ..++..++.++.. .+..+..+++.|..++.... .+......+..+..+
T Consensus 176 ~~~~VR~~a~~~l~~l~~~~~~--~~~~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~ 250 (588)
T 1b3u_A 176 DTPMVRRAAASKLGEFAKVLEL--DNVK-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQA 250 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCH--HHHH-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHHHHTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcH--HhHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 3567888888888877633211 1111 2355666666653 23445556777666553100 011122233344445
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2145 LLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2145 L~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
+.+ .+..+|..+++.|+.+...
T Consensus 251 ~~d----~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 251 AED----KSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp HTC----SSHHHHHHHHHTHHHHHHH
T ss_pred ccC----CCHHHHHHHHHHHHHHHHH
Confidence 532 3688999999999998764
No 84
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.79 E-value=1.7e+02 Score=39.38 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=60.3
Q ss_pred HHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHH-hhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChH
Q 000052 2099 LLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILE-LLLPSQQETPLQQRAAAASLLGKLVGQPMHGPR 2176 (2592)
Q Consensus 2099 ~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~-lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPr 2176 (2592)
.+++..|.+ .++.+..++..|..|+.++...+..+..|+|.-+|. +|.+ .+..+|+.++.+|.-+..+ -|+.
T Consensus 37 ~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~~--~g~d 110 (684)
T 4gmo_A 37 LPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQE--EEAD 110 (684)
T ss_dssp HHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHHH--SCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhh--cCch
Confidence 345555654 567788899999999999999999999999998877 4554 3689999999999999876 4666
Q ss_pred HHHHH
Q 000052 2177 VAITL 2181 (2592)
Q Consensus 2177 V~~~L 2181 (2592)
+...+
T Consensus 111 ~~~~l 115 (684)
T 4gmo_A 111 FCVHL 115 (684)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 85
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=72.25 E-value=6.2 Score=44.73 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=59.2
Q ss_pred EEEEEEeecccc---cccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCccccee
Q 000052 23 ARYLVVKHSWRG---RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFK 99 (2592)
Q Consensus 23 a~y~vtKhSWrG---kYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mk 99 (2592)
+.|+..|..-+| .-..++.|+..||..|||.|-+++..|+| ++|..+... .+.|+|.+.... ..++.
T Consensus 116 ~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi~~~~~~~~~~l~~~~~-~~I~~~~~~------~~~f~i~~~~~~---~~~~~ 185 (206)
T 1mix_A 116 VSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGDYQ---DGYYS 185 (206)
T ss_dssp CEEEEEEECCSSCSSCEEEEEEECSSEEEEEETTTCCEEEEEEG-GGCCEEEEC------SSEEEEECGGGS---SSCEE
T ss_pred ceEEEEEEccCCCCCcCcEEEEEcccceEEeCCCCCceeeeeeh-hHeeecccC------CCEEEEEeCccc---ceEEE
Confidence 345555644333 35789999999999999999999999999 799887762 357998876532 23577
Q ss_pred eehhhhhHHHHHHHHh
Q 000052 100 FSSRFRASILTELHRI 115 (2592)
Q Consensus 100 FSs~~Ra~lLT~l~r~ 115 (2592)
|.|.. ++.+++|...
T Consensus 186 ~~t~~-~~~i~~Li~~ 200 (206)
T 1mix_A 186 VQTTE-GEQIAQLIAG 200 (206)
T ss_dssp EECSC-HHHHHHHHHT
T ss_pred EECCc-HHHHHHHHHH
Confidence 87754 5667777653
No 86
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=67.57 E-value=44 Score=42.65 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=41.9
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCchH--HHHHHHHHHhhccccchhHHHHHHHhhChH
Q 000052 2389 RVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVVAGNRARDALVAQGLKVGLV 2466 (2592)
Q Consensus 2389 ~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~~--la~e~L~r~~~~~~r~~~~lv~qal~~~Lv 2466 (2592)
.||..++..|..++..-- -+.+ .+.+++.+++.++.....+ .|+++|.++...-... ...+-.-..++
T Consensus 257 ~vR~~a~~~l~~l~~~~~-~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~ 326 (588)
T 1b3u_A 257 RVRYMVADKFTELQKAVG-PEIT------KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD---CRENVIMSQIL 326 (588)
T ss_dssp HHHHHHHHTHHHHHHHHC-HHHH------HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT---THHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhC-cccc------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh---hhhhHHHHHHH
Confidence 578899888887764210 0111 1345788888876543322 6678888777642111 00111223566
Q ss_pred HHHHHhhh
Q 000052 2467 DVLLGLLD 2474 (2592)
Q Consensus 2467 ~~LL~lL~ 2474 (2592)
+++..+++
T Consensus 327 p~l~~~l~ 334 (588)
T 1b3u_A 327 PCIKELVS 334 (588)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 77777764
No 87
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=66.23 E-value=4.9 Score=40.52 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=44.0
Q ss_pred cceeeee---cCCCcccccccHHHHHHHhhcCCcCcCCceecccC--cchhhchhh
Q 000052 1171 FKEWMFI---DKDGAQVGPVEKDAIRRFWSKKAIDWTTRCWASGM--LDWKKLRDI 1221 (2592)
Q Consensus 1171 ~KeWyY~---~~~g~q~GP~s~~eLk~l~~~g~I~~~T~vWa~GM--~~W~~l~~i 1221 (2592)
.+.|.|- +.+|+-+||||-.+|+...++|-.+..-.|++.|. ..|.++..|
T Consensus 25 ~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rI 80 (86)
T 1syx_B 25 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRI 80 (86)
T ss_dssp CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGC
T ss_pred cceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeee
Confidence 4889998 66689999999999999999999999999999883 468887665
No 88
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=64.36 E-value=9.7 Score=44.01 Aligned_cols=81 Identities=14% Similarity=0.288 Sum_probs=56.0
Q ss_pred EEEEEEeecccc---cccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCccccee
Q 000052 23 ARYLVVKHSWRG---RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFK 99 (2592)
Q Consensus 23 a~y~vtKhSWrG---kYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mk 99 (2592)
+.|+..|..-+| --..++.|+..||..|||.|-+++..|+| ++|..+... .+.|+|.+.. + +...+.
T Consensus 127 ~~~f~v~~~~~g~~~~~~~~LgI~~~GI~v~~~~tk~~l~~~~~-~~I~~~~~~------~~~f~I~~~~--~-~~~~~~ 196 (222)
T 4f7g_A 127 VSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGD--Y-QDGYYS 196 (222)
T ss_dssp CEEEEEEEECTTSSCEEEEEEEECSSEEEEECTTTCCEEEEEEG-GGCCEEEEC------SSEEEEECCT--T-SSSCEE
T ss_pred cEEEEEEEecCCCCCCCCEEEEEcCCcEEEEcCCCCceeEeccH-HHeeeeccC------CCEEEEEECC--c-cceEEE
Confidence 345555543333 23689999999999999999999999999 799887741 3579998752 2 223577
Q ss_pred eehhhhhHHHHHHHH
Q 000052 100 FSSRFRASILTELHR 114 (2592)
Q Consensus 100 FSs~~Ra~lLT~l~r 114 (2592)
|.|.. ++.+.+|+.
T Consensus 197 ~~T~q-~~~I~~Li~ 210 (222)
T 4f7g_A 197 VQTTE-GEQIAQLIA 210 (222)
T ss_dssp EECSC-HHHHHHHHH
T ss_pred EECCc-HHHHHHHHH
Confidence 77654 444555554
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=59.60 E-value=9.8 Score=51.16 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhCccchhhcccccccccccc-ccccCCCCCCChhhHHHHHHHHHcCC--hhHHHHHHhhchhHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPNLASIFSTKEKLLPLFE-CFSVPFAPDSNIPQLCLNVLSLLTTC--ASCLEAMVADGSSLLLLLQ 2103 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~-~L~~~~~~~~~vq~~aL~VL~~ls~n--~~CVeaIA~~~~vl~~Ll~ 2103 (2592)
.+|+.||.|++. +|.....+...+-+.+++. +|.- ++..|+..|...|..|+.. ...+..|...+ ++..|+.
T Consensus 52 ~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D---~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~-il~~L~~ 126 (684)
T 4gmo_A 52 TTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTD---NNIDSRAAGWEILKVLAQEEEADFCVHLYRLD-VLTAIEH 126 (684)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTC---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC-hHHHHHH
Confidence 678999999996 6666665665555555544 3432 4567888888888877632 33444566655 7777777
Q ss_pred HHhhC----------------------cchHHHHHHHHHHhhc-chHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHH
Q 000052 2104 MLHYA----------------------PACREGVLHVLYALAS-TPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAA 2160 (2592)
Q Consensus 2104 lL~~~----------------------p~~~~~vL~~L~aL~S-~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~a 2160 (2592)
++... ++..+.++.+|..|+. +.+.+......|++..|+..|.+. +..+..++..+
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~-~~~~~~v~~~a 205 (684)
T 4gmo_A 127 AAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA-DIAPQDIYEEA 205 (684)
T ss_dssp HHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH-CCSCHHHHHHH
T ss_pred HHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc-CCCcHHHHHHH
Confidence 76531 0122336677777775 556777777888898998887543 34577889999
Q ss_pred HHHHHHHhcC
Q 000052 2161 ASLLGKLVGQ 2170 (2592)
Q Consensus 2161 A~lL~kM~~D 2170 (2592)
+..|..+..|
T Consensus 206 ~~~L~~ls~d 215 (684)
T 4gmo_A 206 ISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999888775
No 90
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=56.66 E-value=4.5e+02 Score=35.23 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=36.8
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCch--HHHHHHHHHHhhc
Q 000052 2389 RVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGS--ILALETLKRVVVA 2448 (2592)
Q Consensus 2389 ~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~--~la~e~L~r~~~~ 2448 (2592)
.+|..++..|.+++.+..- +.+... -+.++|.+.+++..+... ..||.+|.++...
T Consensus 381 ~~r~~a~~~l~~i~~~~~~-~~~~~~---~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEP-SQLKPL---VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCH-HHHHHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999875320 111110 134688888888765433 2788999888764
No 91
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=54.72 E-value=18 Score=47.44 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=90.7
Q ss_pred cchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhhccchhcccchhhHHHHHHhhcCCCChh
Q 000052 522 FPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKSVLFSQQGYLIVLVNRLRPMSVSP 601 (2592)
Q Consensus 522 ~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs~ll~~~~f~~~L~~~l~~~~~~a 601 (2592)
+|..+..|+..|...+|.|...|+++|.-.. . .++ ++ ..+..|-+.|.....-+
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-----~--------p~~-----l~--------~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-----I--------TDS-----LD--------LVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-----C--------SST-----HH--------HHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-----c--------hhh-----HH--------HHHHHHHHHhhhhcccc
Confidence 5666678899999999999999998875433 1 111 11 12344444444433333
Q ss_pred HHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 000052 602 LLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAESVRETVAVIMRTIAEEDAIAAESMRDAALR 681 (2592)
Q Consensus 602 Lv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf~Lf~hp~~~i~~~aglimrai~Ee~~~~a~~mq~~AL~ 681 (2592)
--..+++|+|....+-|-.-..+. .+=.+||-.|.|+-.+|++++--.+.++.
T Consensus 351 ASTgSVMdLLAkL~s~p~~a~~dp-----------~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------------- 403 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPELSIPP-----------ERLKDIFPCFTSPVPEVRTSILNMVKNLS---------------- 403 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTCCCCS-----------GGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------------
T ss_pred hhhHHHHHHHHHHHcCCcccccCh-----------HHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------------
Confidence 345677888888887775433332 66788999999999999999877776665
Q ss_pred hcHHHHHHHHHhcCCCC-chhHHHHHH
Q 000052 682 DGALLRHLLHAFFLPAG-ERREVSRQL 707 (2592)
Q Consensus 682 eGallrHL~~Alf~~~~-~~r~lsr~L 707 (2592)
.|.+|||+.+-+-...+ +-+++|.++
T Consensus 404 ~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 404 EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 67899999887765543 457777654
No 92
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=45.31 E-value=2.8e+02 Score=31.46 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhhccch
Q 000052 499 VMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTKS 578 (2592)
Q Consensus 499 ~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nKs 578 (2592)
..+.+.||..|+.. .|-..-..++..+..|+..|+-++..|-.+|...|.+++..+
T Consensus 74 ~~~a~~~l~~la~~-l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------------------- 129 (242)
T 2qk2_A 74 VAMAGKCLALLAKG-LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------------------- 129 (242)
T ss_dssp HHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----------------------
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----------------------
Confidence 44567888887732 221111233456778999999999999999999999988621
Q ss_pred hcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCC-CCCChHHHHHHHHHHHhhhhHHHHhhCCChhhHHHHH
Q 000052 579 VLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHS-ETTQYTVFVELLRQVAGLRRRLFALFGHPAESVRETV 657 (2592)
Q Consensus 579 ~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~s-eTT~~~~F~~ll~~va~~gr~Lf~Lf~hp~~~i~~~a 657 (2592)
+-+.+++.|+..|... .+.|=..++.++..+++. ++ +......+..++. .|+.+..++...|+++|
T Consensus 130 ---~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~-~~~~~~~~~~l~~l~p-------~l~~~l~D~~~~VR~~A 196 (242)
T 2qk2_A 130 ---SLEAQQESIVESLSNK--NPSVKSETALFIARALTR-TQPTALNKKLLKLLTT-------SLVKTLNEPDPTVRDSS 196 (242)
T ss_dssp ---CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT-CCGGGCCHHHHHHHHH-------HHHHHHTSSCHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-cCCCCccHHHHHHHHH-------HHHHHhcCCChHHHHHH
Confidence 1134667788877754 578999999999988754 21 1122344444444 45677789999999988
Q ss_pred HHHHHHHHhh-cHH
Q 000052 658 AVIMRTIAEE-DAI 670 (2592)
Q Consensus 658 glimrai~Ee-~~~ 670 (2592)
...|-.|+.. |.+
T Consensus 197 ~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 197 AEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCHH
Confidence 8877777665 543
No 93
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=45.03 E-value=7e+02 Score=33.34 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=33.6
Q ss_pred HhhhhHHHHHHHhhCChhHHHHHhhcCCCCCcchHHHHHHhcccCchH--HHHHHHHHHhh
Q 000052 2389 RVRLSCLRVLHQLAASTTCAEAMAATSTGTPQVVPILMKAIGWQGGSI--LALETLKRVVV 2447 (2592)
Q Consensus 2389 ~v~~~~l~vlh~ls~s~~Cv~ala~~~~~~p~~~~~l~~~m~~~~~~~--la~e~L~r~~~ 2447 (2592)
.+|..++..|..++.+.. .+.+... -+.+++.|.+.+..+...+ .+|.+|.++..
T Consensus 384 ~~r~~a~~~l~~i~~~~~-~~~~~~~---l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPD-KVQRTYY---VHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHHHHHTSSSSC-HHHHHHH---HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCC-HHHHHHH---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 578899999999986521 1222211 1245788888876643322 56677777654
No 94
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=44.68 E-value=45 Score=37.59 Aligned_cols=76 Identities=13% Similarity=0.233 Sum_probs=53.5
Q ss_pred cccccEEEEEecCe-----ee----eeCCC-CcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeeh
Q 000052 33 RGRYKRILCISNAT-----II----TLDPN-TLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSS 102 (2592)
Q Consensus 33 rGkYkRif~Ig~~~-----i~----T~nP~-tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs 102 (2592)
-+|.+|++|++... |. -.|.+ ++.+--+|+. .|+-.|.-. ...+.+|+|++.| ...=..-+.
T Consensus 62 ~~KK~R~L~lav~~~~sgrV~lhK~K~N~ngsfsiGkTW~L-~ELk~Ie~~---~~~~~gF~ltl~K----~Y~W~a~s~ 133 (171)
T 3hie_A 62 ENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQL-TELVRVEKD---LEISEGFILTMSK----KYYWETNSA 133 (171)
T ss_dssp GGEEEEEEEEEECTTCTTCEEEEEEEECTTSCEEEEEEEEG-GGCCEEEEC---SSCTTEEEEESSS----EEEEECSSH
T ss_pred CCccceEEEEEEecCCCceEEEEEEEECCCCcEEeeeeeec-ccceeeecc---CCCCCcEEEEeCC----eEEEecCCH
Confidence 46889999986553 32 33455 6899999999 788877753 1246799999843 322233346
Q ss_pred hhhhHHHHHHHHhh
Q 000052 103 RFRASILTELHRIR 116 (2592)
Q Consensus 103 ~~Ra~lLT~l~r~r 116 (2592)
..|...++.|.++.
T Consensus 134 ~Er~~FI~sL~K~y 147 (171)
T 3hie_A 134 KERTVFIKSLITLY 147 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999999976
No 95
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=42.87 E-value=51 Score=34.34 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=50.5
Q ss_pred cceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000052 139 VPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2592)
Q Consensus 139 ~p~~L~Vt~~~leqld~~~-g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2592)
-+++|++|+.+|...|+.+ +.++..++|+.+...|- | .+.|.+. -|+.+- +|.|.+ .+-++
T Consensus 21 G~~~L~l~~~~l~L~~~~~~~~~l~~Wp~~~LRRyG~----~-------~~~FsFE--aGRrC~tG~G~f~F~~-~~~~~ 86 (103)
T 1j0w_A 21 GECALQITYEYICLWDVQNPRVKLISWPLSALRRYGR----D-------TTWFTFE--AGRMCETGEGLFIFQT-RDGEA 86 (103)
T ss_dssp EEEEEEECSSEEEEEESSSTTBEEEEEEGGGEEEEEE----C-------SSEEEEE--ECSSSSSCSEEEEEEC-SCHHH
T ss_pred ccEEEEECCCEEEEEecCCCCcceEEeeHHHHhhcCc----c-------CCEEEEE--eCCCCCCCCcEEEEEc-CCHHH
Confidence 3789999999999998865 46899999998875443 3 3677663 454433 788887 46667
Q ss_pred HHHHHHHHH
Q 000052 214 IVSSLTKTA 222 (2592)
Q Consensus 214 ii~~i~~~A 222 (2592)
|.+.+...+
T Consensus 87 If~~v~~ai 95 (103)
T 1j0w_A 87 IYQKVHSAA 95 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877775543
No 96
>3f0w_A NUMB-R, NUMB-like protein; PH domain-like, PID domain, phosphoprotein, signaling protei structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} PDB: 1wj1_A 2nmb_A* 1ddm_A
Probab=41.79 E-value=53 Score=36.63 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=49.0
Q ss_pred cccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCc--cccccCCCCC-hHH
Q 000052 137 EWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKS--KAFQAAPGTT-NSA 213 (2592)
Q Consensus 137 ~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~--r~~l~~~~~~-~~~ 213 (2592)
+|.+|.|.|++.||-.+|+.++.++..|+.++|. +... |. .++.-|+.+--.++.. .-|+|.|+.. -.+
T Consensus 76 k~~~V~L~VS~~GI~l~d~~t~~~l~~~~i~~IS---f~~~-d~----~~~~~FafIar~~~~~~~~CHvF~c~~~~A~~ 147 (168)
T 3f0w_A 76 KSVKSVLWVSADGLRVVDDKTKDLLVDQTIEKVS---FCAP-DR----NLDKAFSYICRDGTTRRWICHCFLALKDSGER 147 (168)
T ss_dssp -CEEEEEEECSSEEEEEETTTCCEEEEEEGGGEE---EEEE-CS----SCTTEEEEEEEETTTTEEEEEEEEESSSCHHH
T ss_pred CCcEEEEEEECCEEEEEeCCCCeEEEeeecCcEE---EEec-CC----CCCcEEEEEEecCCCCcEEEEEEEeccchHHH
Confidence 4889999999999999999999999999998886 3321 21 1234555421222222 3688887532 445
Q ss_pred HHHHHH
Q 000052 214 IVSSLT 219 (2592)
Q Consensus 214 ii~~i~ 219 (2592)
|+..|-
T Consensus 148 I~~aIg 153 (168)
T 3f0w_A 148 LSHAVG 153 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 97
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=41.75 E-value=1.6e+02 Score=34.31 Aligned_cols=126 Identities=10% Similarity=0.196 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCch-hhhhhhhhcc
Q 000052 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSK-GEQHATMMHT 576 (2592)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~-~e~~~~~~~n 576 (2592)
.....+.|||=|+-++.|+..+..-|..+..|..+|...+..+...|+++|.++.- .++. .. ++.--+.+-+
T Consensus 70 ~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~-~~~~------~G~~~~VL~Al~~ 142 (233)
T 2f31_A 70 NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQP------EDMNERVLEAMTE 142 (233)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHT-CSSS------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHh-CCCC------CChHHHHHHHHHH
Confidence 34457999999999999999999999999999999998888899999999998543 2221 01 2221111112
Q ss_pred chhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHH
Q 000052 577 KSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVA 636 (2592)
Q Consensus 577 Ks~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va 636 (2592)
..+ ++.+..++.|++.++..+. .=...+.+.|+-..+..| .|-.....+-.+.-
T Consensus 143 ~~~-~~e~~RF~~lv~~l~~~~~-~e~~~~~m~lIN~li~~~----~dl~~R~~lR~ef~ 196 (233)
T 2f31_A 143 RAE-MDEVERFQPLLDGLKSGTS-IALKVGCLQLINALITPA----EELDFRVHIRSELM 196 (233)
T ss_dssp HHH-HHTSCTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHH
T ss_pred HHH-hCCcchHHHHHHHHhcCCh-HHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHH
Confidence 222 3566678889998876433 233455666777777554 35555555555553
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=41.30 E-value=53 Score=43.91 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhCcc-chhhcc-ccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHH
Q 000052 2027 QFGLTSLQNILTSNPN-LASIFS-TKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQM 2104 (2592)
Q Consensus 2027 ~maL~AL~nLL~~nP~-La~~~~-~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~l 2104 (2592)
..+++.|..|+.++|. +...+- ..+.++.|.++|... ...|+..++-+|..++.+..=++.+.+.+.++..|+.+
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~---rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS---REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 4567888899999998 444333 447888999999853 35688999999999998888888888888889999998
Q ss_pred HhhCcc-----hHHHHHHHHHHhhcchHH-HHHHHHcCChhhhHHhhcCC
Q 000052 2105 LHYAPA-----CREGVLHVLYALASTPEL-AWAAAKHGGVVYILELLLPS 2148 (2592)
Q Consensus 2105 L~~~p~-----~~~~vL~~L~aL~S~~~L-Vkqal~~GgvlYLL~lL~~~ 2148 (2592)
+..-.. ....||.+|..|.....- =+...+.|++.+|..+|...
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~ 266 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG 266 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC
Confidence 876433 234588888888864332 23345578899999988653
No 99
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=40.61 E-value=3.8e+02 Score=33.65 Aligned_cols=139 Identities=13% Similarity=0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhh-hhhhccchh
Q 000052 501 GFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQH-ATMMHTKSV 579 (2592)
Q Consensus 501 ~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~-~~~~~nKs~ 579 (2592)
..+.|||=|+-.+.|+..+..-|..+..|+.+|...+..+...|+++|.++.- .++..+ .++.- .++.+-|.
T Consensus 139 ~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~-~~~~~g-----G~~~VL~Al~~~~~- 211 (383)
T 3eg5_B 139 EIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQPED-----MNERVLEAMTERAE- 211 (383)
T ss_dssp HHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT-CCSSTT-----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CcCcCC-----cHHHHHHHHHHHHH-
Confidence 46999999999999999999999999999999999999999999999988653 221000 11111 11222332
Q ss_pred cccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHH--HhhhhHHHHhhCCChhh
Q 000052 580 LFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQV--AGLRRRLFALFGHPAES 652 (2592)
Q Consensus 580 ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~v--a~~gr~Lf~Lf~hp~~~ 652 (2592)
.+....+..|++-|+....-.+ ..+.+.|+-..+..| .|-.....+-.+. +++.+-|=+|=...+..
T Consensus 212 -~~e~~RF~~lv~~L~~~~~~e~-~~~~m~lIN~li~~~----~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 212 -MDEVERFQPLLDGLKSGTSIAL-KVGCLQLINALITPA----EELDFRVHIRSELMRLGLHQVLQELREIENED 280 (383)
T ss_dssp -HHTSCTTHHHHHTTSTTSCHHH-HHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHH
T ss_pred -hCCCCcHHHHHHHHHccCcHHH-HHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCChHHHHHHHhcCCChh
Confidence 4666778899999987544333 345566777777655 3666666776666 34444444433333333
No 100
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=40.07 E-value=70 Score=35.06 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=54.9
Q ss_pred ccCCccc-ceEEEEeeceEEEecCCCCceEEEeeccCCCcc-ceeEeccccCCCCCCCcEEEeeccC--CCccccccCCC
Q 000052 133 RRNSEWV-PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSP-AIVLLSDAYGKRSETGGFVLCPLYG--RKSKAFQAAPG 208 (2592)
Q Consensus 133 ~~k~~w~-p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~-~i~~l~d~~~~~~~~~gfvl~~~~g--~~~r~~l~~~~ 208 (2592)
+.++-|. ...|+|++.+|..+|+.||+.+=+|+...|..+ ++..... |++=++|+---+ ++.-+|+|.|.
T Consensus 42 ~kg~iW~Q~m~L~v~~~~v~LlD~et~eelE~fpl~~I~~~~av~~~~~------y~siLllv~q~~~~~~~~iH~FQc~ 115 (140)
T 2cy5_A 42 SQGRVWAQEMLLRVSPSQVTLLDPVSKEELESYPLDAIVRCDAVMPRGR------SRSLLLLVCQEPERAQPDVHFFQGL 115 (140)
T ss_dssp HTTCCCCEEEEEEECSSEEEEECTTTCCEEEEEEGGGEEEEEEECCSSC------SSCEEEEEECCTTCSSCEEEEEEEC
T ss_pred HcCCcccceeEEEECCCeEEEEccCccchhhcCChhhceeccccCCccc------cCcEEEEEEecCCCCCccEEEEEec
Confidence 4578899 999999999999999999999999999999865 3322222 355554421112 34559999986
Q ss_pred CChHHHHHH
Q 000052 209 TTNSAIVSS 217 (2592)
Q Consensus 209 ~~~~~ii~~ 217 (2592)
.-..+.|.+
T Consensus 116 ev~A~~v~~ 124 (140)
T 2cy5_A 116 LLGAELIRE 124 (140)
T ss_dssp TTHHHHHHH
T ss_pred cccHHHHHH
Confidence 444444433
No 101
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=39.82 E-value=1e+02 Score=34.02 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=55.7
Q ss_pred cCCccc---ceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCccc--cccCCC
Q 000052 134 RNSEWV---PYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSKA--FQAAPG 208 (2592)
Q Consensus 134 ~k~~w~---p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r~--~l~~~~ 208 (2592)
.++-|- ...|.|...+|-.+||.|..++.+|+-..|. +.-...+. +-...|++.--.+..+|. |+|.|+
T Consensus 47 ~~~~wg~gq~~~L~v~~~tlrLvD~~tk~~L~~~pI~~I~---f~~~gr~~---~~~~dFAfv~rd~~t~~~~CHvFrCe 120 (148)
T 3d8d_A 47 MSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIR---VWGVGRDS---GRERDFAYVARDKLTQMLKCHVFRCE 120 (148)
T ss_dssp TSTTCSTTCEEEEEEETTEEEEECTTTCCEEEEEEGGGCC---EEEECCCC-----CCEEEEEEECTTTCCEEEEEEEES
T ss_pred cccccccCceEEEEEcCCeEEEecCCCCceEEEeeEEEEE---EEeCCCCC---CccccEEEEEecCCCcceEeEEEEcC
Confidence 357777 6999999999999999999999999999886 44222221 011248765335665654 889997
Q ss_pred CChHHHHHHHHHHH
Q 000052 209 TTNSAIVSSLTKTA 222 (2592)
Q Consensus 209 ~~~~~ii~~i~~~A 222 (2592)
..-..|-+++.+.-
T Consensus 121 ~~a~~Ia~al~~~c 134 (148)
T 3d8d_A 121 APAKNIATSLHEIC 134 (148)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 44444555555443
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.89 E-value=78 Score=37.25 Aligned_cols=135 Identities=15% Similarity=0.126 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhCccchhh---ccccccccccc-cccccCCCCCCChhhHHHHHHHHHcCChhHH---HHHHh--hchhH
Q 000052 2028 FGLTSLQNILTSNPNLASI---FSTKEKLLPLF-ECFSVPFAPDSNIPQLCLNVLSLLTTCASCL---EAMVA--DGSSL 2098 (2592)
Q Consensus 2028 maL~AL~nLL~~nP~La~~---~~~~~~L~~LF-~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CV---eaIA~--~~~vl 2098 (2592)
-+++.|..+|..++..... +..+..+..+| .++. .++..++..+++++..+....... ..... ...++
T Consensus 28 eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~---DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l 104 (278)
T 4ffb_C 28 EAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT---DSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWT 104 (278)
T ss_dssp HHHHHHHHHHHTC----------CCTTSCTHHHHHHTT---CSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Confidence 4688888999888765332 11122222222 2222 345567888999988776432111 00000 01122
Q ss_pred HHHH-HHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChH
Q 000052 2099 LLLL-QMLHY-APACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPR 2176 (2592)
Q Consensus 2099 ~~Ll-~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPr 2176 (2592)
..|+ .++.. .+..+..+++++..++.. .+....+++.+....+..+|.+|..+...|.++..+ +|++
T Consensus 105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~---------~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~--fg~~ 173 (278)
T 4ffb_C 105 PLLVEKGLTSSRATTKTQSMSCILSLCGL---------DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA--FGLT 173 (278)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHT---------SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH--HTTT
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--hCCC
Confidence 3332 22322 233445566666555421 112222333333332345899999999999998875 5554
No 103
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=37.87 E-value=1.1e+02 Score=33.23 Aligned_cols=93 Identities=8% Similarity=0.073 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHh-hhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeEecccc
Q 000052 104 FRASILTELHRI-RWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAY 181 (2592)
Q Consensus 104 ~Ra~lLT~l~r~-r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~-g~~~~~y~y~dm~~~~i~~l~d~~ 181 (2592)
--.+++-++.+- +. +..+..|.+|.|.|++.||..+|..+ +++++-..-++|. +..+ |.
T Consensus 32 ~G~dV~~~Ai~~i~~--------------~~~~~~~~~v~l~Vs~~gi~v~~~~~~~~~l~~~~l~~IS---Fc~~-d~- 92 (136)
T 1wgu_A 32 VGMDTLNSAIENLMT--------------SSSKEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK- 92 (136)
T ss_dssp SCSHHHHHHHHHHHH--------------SSCTTTSCEEEEEEETTEEEEECSSCSSCEEEEEETTTEE---EEEE-CS-
T ss_pred CcHHHHHHHHHHHHh--------------ccccccCceEEEEEccCEEEEEecCCCCceeccceEEEee---eEec-CC-
Confidence 445778887653 31 11245699999999999999999877 5888887766664 5433 32
Q ss_pred CCCCCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHHH
Q 000052 182 GKRSETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLTK 220 (2592)
Q Consensus 182 ~~~~~~~gfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~~ 220 (2592)
.+--|++.--.+ ..| -|+|-|+.+-.+|-+.|.+
T Consensus 93 ----~~k~FaFI~~~~-~~~f~CHvF~c~~~A~~vs~aV~~ 128 (136)
T 1wgu_A 93 ----DVHTFAFIMDTG-NQRFECHVFWCEPNAANVSEAVQA 128 (136)
T ss_dssp ----STTCEEEEEECS-SSCEEEEEEECSSCTHHHHHHHHH
T ss_pred ----CCcEEEEEEcCC-CccEEEEEEEcCcchHHHHHHHHH
Confidence 134454321223 333 5778787565556555543
No 104
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=37.35 E-value=30 Score=43.03 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=59.0
Q ss_pred cEEEEEEEeecccccc---cEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccc
Q 000052 21 YLARYLVVKHSWRGRY---KRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKA 97 (2592)
Q Consensus 21 ~~a~y~vtKhSWrGkY---kRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~ 97 (2592)
|=+.|+..|..-+|+- ..++.|+..||..||+.|-++...|+| ++|..++.. .+.|+|.+... +..+
T Consensus 279 yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI~v~~~~~k~~l~~~~~-~~I~~~~~~------~~~f~I~~~~~---~~~~ 348 (371)
T 3ivf_A 279 YGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSL-TNIKRWAAS------PKSFTLDFGDY---QDGY 348 (371)
T ss_dssp TTCEEEEEEEECTTSSCEEEEEEEECSSEEEEEETTTCCEEEEEEG-GGCCEEEEE------TTEEEEECGGG---SSSC
T ss_pred cCcEEEEEEEeccCCCCCccEEEEEcCCcEEEEcCCCCceEEeeeh-hheeeeecC------CCEEEEEECCc---cCcE
Confidence 3345666664444432 478999999999999999999999999 799888762 46899998642 2245
Q ss_pred eeeehhhhhHHHHHHHH
Q 000052 98 FKFSSRFRASILTELHR 114 (2592)
Q Consensus 98 mkFSs~~Ra~lLT~l~r 114 (2592)
+.|.|.. ++-+.+|..
T Consensus 349 ~~~~T~~-~~~I~~Li~ 364 (371)
T 3ivf_A 349 YSVQTTE-GEQIAQLIA 364 (371)
T ss_dssp EEEECSC-HHHHHHHHH
T ss_pred EEEECCh-HHHHHHHHH
Confidence 7777754 444555544
No 105
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=36.77 E-value=1e+02 Score=32.60 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=44.8
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCc--cccccCCC
Q 000052 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKS--KAFQAAPG 208 (2592)
Q Consensus 136 ~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~--r~~l~~~~ 208 (2592)
..|.+|.|.|++.||-.+|+.++.++..|+.+.|. +.. .|. .++.-|+.+.-.+... .-|+|.+.
T Consensus 41 ~~~~~v~L~Vs~~gi~l~d~~~~~~~~~~~i~~Is---f~~-~d~----~~~~~FafI~r~~~~~~~~CHvF~c~ 107 (137)
T 3so6_A 41 KKLQKVTLKVSPRGIILTDSLTSQLIENVSIYRIS---YCT-ADK----MHDKVFAYIAQSQQNESLECHAFLCT 107 (137)
T ss_dssp SCCEEEEEEEETTEEEEEETTTCCEEEEEEGGGEE---EEE-ECS----SSTTEEEEEEECSSSSCEEEEEEECS
T ss_pred CCCCEEEEEEeCCeEEEEECCCCcEEEeeccCEEE---EEE-ecC----CCCCEEEEEEEcCCCCeEEEEEEEeC
Confidence 36779999999999999999999999999988875 332 121 1345666432232222 46888874
No 106
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=34.91 E-value=68 Score=37.61 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=63.9
Q ss_pred HHHHHHHHH-HHhhCccchhhccccccccccccccccC--CCCCCChhhHHHHHHHHHcCChhHH-HHHH-hh-chhHHH
Q 000052 2027 QFGLTSLQN-ILTSNPNLASIFSTKEKLLPLFECFSVP--FAPDSNIPQLCLNVLSLLTTCASCL-EAMV-AD-GSSLLL 2100 (2592)
Q Consensus 2027 ~maL~AL~n-LL~~nP~La~~~~~~~~L~~LF~~L~~~--~~~~~~vq~~aL~VL~~ls~n~~CV-eaIA-~~-~~vl~~ 2100 (2592)
..++++|.. ++..+|.+......+. .++..|... ..++..+...|+++|..++..- - ..+. .. ..++..
T Consensus 34 k~al~~L~~~~~~~~~~i~~~~~~~~---~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~f~~~y~~~llp~ 108 (249)
T 2qk1_A 34 VEALEEFWDSVLSQTKKLKSTSQNYS---NLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPGFSKDYVSLVFTP 108 (249)
T ss_dssp HHHHHHHHHHTGGGCCCBCCTTCCCH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccCcccHH---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--ccccccHHHHHHHHHH
Confidence 356888888 8888887663222222 233333111 1234557788888888877211 0 0111 10 124445
Q ss_pred HHHHHhhC-cchHHHHHHHHHHhhcch-HHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcC
Q 000052 2101 LLQMLHYA-PACREGVLHVLYALASTP-ELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQ 2170 (2592)
Q Consensus 2101 Ll~lL~~~-p~~~~~vL~~L~aL~S~~-~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~D 2170 (2592)
++..+... +..+..+-..|.+++.+. +. ..++-+..+++-+...-...++++|..+...|.++...
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 55555432 222222223333333110 00 00010223333221111223689999999999999864
No 107
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=33.66 E-value=63 Score=40.60 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=65.6
Q ss_pred hhHHHhcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHH
Q 000052 1663 EELVRDGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAV 1742 (2592)
Q Consensus 1663 eEL~re~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~ 1742 (2592)
+++. .+|+..|..++.+|..--.. ........+-..|+||+...-....++..+...+..+.-|+.|+. ...+.+.
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~--~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~~ 179 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEE--TSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMM 179 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCchHHH
Confidence 5555 67999999999988543211 122334566678999999999999999999999999999998875 3445777
Q ss_pred HHHHHHHHHHhCC
Q 000052 1743 DAALQTIAHVSVS 1755 (2592)
Q Consensus 1743 ~aALe~v~~~a~~ 1755 (2592)
..|+|.+..+|.-
T Consensus 180 ~~aleLL~~lc~~ 192 (383)
T 3eg5_B 180 IDAAKLLSALCIL 192 (383)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 7888888877653
No 108
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=33.65 E-value=64 Score=34.80 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=50.8
Q ss_pred ceEEEEeeceEEEecC----CCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCCh
Q 000052 140 PYKLKVTYVGVELTDL----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTN 211 (2592)
Q Consensus 140 p~~L~Vt~~~leqld~----~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~ 211 (2592)
++.|+|++..|...|+ .+.++++.++|+.|...+. |. +-|.+. -|+.+- +|.|.+ .+.
T Consensus 26 ~y~L~vt~~~l~L~~~~~~~~~~~~l~~Wp~~~LRryG~----d~-------~~FsFE--aGRrC~tGeG~f~F~t-~~~ 91 (127)
T 1p5t_A 26 SYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGR----DK-------VMFSFE--AGRRCPSGPGTFTFQT-SQG 91 (127)
T ss_dssp EEEEEECSSEEEEEEECTTTCSEEEEEEEEGGGEEEEEE----CS-------SEEEEE--ECTTSTTCSEEEEEEC-SCH
T ss_pred cEEEEEcCCEEEEEecCcccCCCcceEEEehHHhhhcCc----cC-------CEEEEE--ecCCCCCCCcEEEEEe-CCH
Confidence 8999999999999974 3567889999999986553 32 455552 554433 788888 477
Q ss_pred HHHHHHHHHHHh
Q 000052 212 SAIVSSLTKTAK 223 (2592)
Q Consensus 212 ~~ii~~i~~~A~ 223 (2592)
++|.+.|....+
T Consensus 92 ~~If~~l~~~i~ 103 (127)
T 1p5t_A 92 NDIFQAVEAAIQ 103 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788877765433
No 109
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=33.63 E-value=73 Score=34.86 Aligned_cols=76 Identities=8% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc--ccccCCCCChH
Q 000052 135 NSEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAPGTTNS 212 (2592)
Q Consensus 135 k~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r--~~l~~~~~~~~ 212 (2592)
+..|.||.|.|.+.||..+|..+.++++-..-++|. +..+ |. +.--|++.---| ..| =|.|-|+.+-.
T Consensus 42 ~~~~~~v~l~Vs~~gi~v~~~~t~e~l~~~~i~~IS---Fcg~-~k-----d~k~FafI~~~~-~~~f~CHvF~c~~~A~ 111 (140)
T 3dxe_A 42 REQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLS---FLAV-GR-----DVHTFAFIMAAG-PASFCCHMFWCEPNAA 111 (140)
T ss_dssp GGGCEEEEEEECSSEEEEEETTTCCEEEEEEGGGEE---EEEE-CS-----STTEEEEEEEEE-TTEEEEEEEEEESCSH
T ss_pred cCCCceEEEEEcCCEEEEEecCCcceeeeccEEEEe---eecc-CC-----CCcEEEEEecCC-CccEEEEEEecCcchH
Confidence 347999999999999999999899999988777765 5533 31 355665432233 333 46676765555
Q ss_pred HHHHHHHH
Q 000052 213 AIVSSLTK 220 (2592)
Q Consensus 213 ~ii~~i~~ 220 (2592)
+|...+.+
T Consensus 112 ~vs~aV~~ 119 (140)
T 3dxe_A 112 SLSEAVQA 119 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655544
No 110
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=33.26 E-value=65 Score=33.79 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=49.5
Q ss_pred ceEEEEeeceEEEecC----CCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCCh
Q 000052 140 PYKLKVTYVGVELTDL----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTN 211 (2592)
Q Consensus 140 p~~L~Vt~~~leqld~----~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~ 211 (2592)
+++|+|++.+|...++ .+++.++.++|+.+...|. |. +-|.+. -|+.+- +|.|.+ .+.
T Consensus 24 ~y~L~v~~~~l~L~~~~~~~~~~~~~~~Wp~~~LRryG~----d~-------~~FsFE--aGRrc~tG~G~f~F~~-~~~ 89 (107)
T 2v76_A 24 SYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGR----DK-------VMFSFE--AGRRCPSGPGTFTFQT-AQG 89 (107)
T ss_dssp EEEEEECSSEEEEEEEC----CEEEEEEEEGGGEEEEEE----CS-------SEEEEE--ECTTSTTCSEEEEEEC-SCH
T ss_pred cEEEEEcCCEEEEEecCccCCCCceeEEEEhHHhhhcCc----cC-------CEEEEE--ecCCCCCCCcEEEEEe-CCH
Confidence 7999999999999874 4567899999999986553 32 455552 454333 788888 477
Q ss_pred HHHHHHHHHHH
Q 000052 212 SAIVSSLTKTA 222 (2592)
Q Consensus 212 ~~ii~~i~~~A 222 (2592)
++|.+.|..+.
T Consensus 90 ~~If~~l~~~i 100 (107)
T 2v76_A 90 NDIFQAVETAI 100 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888776653
No 111
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=32.84 E-value=60 Score=36.06 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=50.4
Q ss_pred CcccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccC------CCccccccCCCC
Q 000052 136 SEWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG------RKSKAFQAAPGT 209 (2592)
Q Consensus 136 ~~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g------~~~r~~l~~~~~ 209 (2592)
..|..|.|.|++.||..+|+.+++++..+..+.|. +. +|. +.-|+.+ ... ....-|+|.++
T Consensus 50 ~~~~~V~L~IS~~gIkv~d~~t~~~i~~~~l~~IS---f~--a~~------~~~f~fI-ar~~~~~~~~~~~CHVF~~~- 116 (162)
T 4dbb_A 50 QPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTIS---YI--ADI------GNIVVLM-ARRRMPRSQYKMICHVFESE- 116 (162)
T ss_dssp CCCEEEEEEEESSEEEEEETTTCCEEEEEEGGGEE---EE--EEE------TTEEEEE-EEECCSTTCEEEEEEEEECT-
T ss_pred CCCcEEEEEEECCEEEEEECCCCcEEeeeecceeE---EE--EEC------CCEEEEE-eccCCCCCCCcEEEEEEECC-
Confidence 45789999999999999999999999999998886 33 343 2455432 111 13347889886
Q ss_pred ChHHHHHHHHH
Q 000052 210 TNSAIVSSLTK 220 (2592)
Q Consensus 210 ~~~~ii~~i~~ 220 (2592)
+-++|+..|-+
T Consensus 117 ~A~~I~~tigq 127 (162)
T 4dbb_A 117 DAQLIAQSIGQ 127 (162)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45556655533
No 112
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.49 E-value=55 Score=34.62 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=52.2
Q ss_pred ceEEEEeeceEEE-ecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHHH
Q 000052 140 PYKLKVTYVGVEL-TDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSAI 214 (2592)
Q Consensus 140 p~~L~Vt~~~leq-ld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~i 214 (2592)
++.|+|++.+|.. .|+.++.++..++|+.|...+. | .+-|.+. -|+.+- +|.|.+ .+-++|
T Consensus 29 ~y~L~l~~~~l~L~~~~~~~~~l~~Wpl~~LRryG~----d-------~~~FsfE--aGRrC~tGeG~f~F~t-~~~~~i 94 (113)
T 2dlw_A 29 SYTLRAGESALELWGGPEPGTQLYDWPYRFLRRFGR----D-------KVTFSFE--AGRRCVSGEGNFEFET-RQGNEI 94 (113)
T ss_dssp EEEEEECSSBEECCCSSSSCCCSSCCBGGGCCCEEE----E-------TTEEEEE--ECSSCSSCSEEEEECC-STHHHH
T ss_pred cEEEEEcCCEEEEEecCCCCCceEEEEhHHhhhcCc----c-------CCEEEEE--ecCCCCCCCCEEEEEc-CCHHHH
Confidence 8999999999998 6888899999999999986554 3 2455552 554443 788888 477788
Q ss_pred HHHHHHHH
Q 000052 215 VSSLTKTA 222 (2592)
Q Consensus 215 i~~i~~~A 222 (2592)
.+.+....
T Consensus 95 f~~l~~~i 102 (113)
T 2dlw_A 95 FLALEEAI 102 (113)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776643
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=31.70 E-value=3.1e+02 Score=32.06 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhcH---HHHH-Hh-hccchhHHHH-HHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhh
Q 000052 498 TVMGFVACLRRLLTSR---TAAS-HV-MSFPAAVGRI-MGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHA 571 (2592)
Q Consensus 498 ~~~~~~~aLrRL~as~---~gf~-~~-~~~p~~~~~v-~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~ 571 (2592)
-+...+++|.-++..- .+.. .+ ..+...+..+ -++|..+...+...|++.+..++.-....
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------------- 137 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------------- 137 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-------------
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-------------
Confidence 3445677777766421 1111 11 1122233333 35677788889899999998888521110
Q ss_pred hhhccchhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhhhHHHHhhCCChh
Q 000052 572 TMMHTKSVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLRRRLFALFGHPAE 651 (2592)
Q Consensus 572 ~~~~nKs~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~gr~Lf~Lf~hp~~ 651 (2592)
...++.++.-+... .|-|..+.+.++.-+|..=+..+-+...+ +...-..|.++|.|+..
T Consensus 138 ------------~~~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~fg~~~~~~k~~------l~~i~~~l~k~l~d~~~ 197 (278)
T 4ffb_C 138 ------------TQSVELVIPFFEKK--LPKLIAAAANCVYELMAAFGLTNVNVQTF------LPELLKHVPQLAGHGDR 197 (278)
T ss_dssp ------------HHHHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHHTTTTCCHHHH------HHHHGGGHHHHHTCSSH
T ss_pred ------------HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHhCCCcCCchhH------HHHHHHHHHHHHhCCcH
Confidence 11223444444432 57889999999998886522222232221 22334567789999999
Q ss_pred hHHHHHHHHHHHHHhh
Q 000052 652 SVRETVAVIMRTIAEE 667 (2592)
Q Consensus 652 ~i~~~aglimrai~Ee 667 (2592)
.|+++|.-++-++.--
T Consensus 198 ~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776544
No 114
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=31.60 E-value=51 Score=39.88 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=50.9
Q ss_pred EEEEEEeecccccccEEEEEecCeeeeeCCCCcc-cccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeee
Q 000052 23 ARYLVVKHSWRGRYKRILCISNATIITLDPNTLA-VTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFS 101 (2592)
Q Consensus 23 a~y~vtKhSWrGkYkRif~Ig~~~i~T~nP~tl~-vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFS 101 (2592)
+.|+..|.. .| =+-++.|+..||..|++++-. ..+.|+| ++|..++.. .+.|+|.++.+ +..++.|.
T Consensus 220 ~~~f~v~~~-~g-~~~~LgI~~~Gi~v~~~~~k~~~~~~f~w-~~I~~~~~~------~~~f~i~~~~~---~~~~~~f~ 287 (314)
T 1h4r_A 220 VNYFAIRNK-KG-TELLLGVDALGLHIYDPENRLTPKISFPW-NEIRNISYS------DKEFTIKPLDK---KIDVFKFN 287 (314)
T ss_dssp CEEEEEEET-TC-CEEEEEECSSEEEEECTTCSSSCSEEEEG-GGEEEEEEE------TTEEEEEESST---TSCCEEEE
T ss_pred ceEEEeecC-CC-CEEEEEEeCCceEEEeCCCCcccceEEec-ccceEEEee------CCEEEEEEcCC---CCceEEEE
Confidence 445555532 23 578999999999999999864 6789999 799888762 35899998742 33578886
Q ss_pred hh
Q 000052 102 SR 103 (2592)
Q Consensus 102 s~ 103 (2592)
|.
T Consensus 288 ~~ 289 (314)
T 1h4r_A 288 SS 289 (314)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 115
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=30.98 E-value=36 Score=41.17 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=49.6
Q ss_pred EEEEEEeecccccccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCC-cccceeee
Q 000052 23 ARYLVVKHSWRGRYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRG-KFKAFKFS 101 (2592)
Q Consensus 23 a~y~vtKhSWrGkYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~-K~~~mkFS 101 (2592)
+.|+..|-+ .| -+-++.|+..||.-|++++- .|.|+| ++|..++.. .+.|+|.++.+.++ +..++.|.
T Consensus 206 ~~~f~vk~~-~~-~~~~LgV~~~Gi~v~~~~~k--l~~f~w-~~I~~~s~~------~k~F~i~~~~~~~~~~~~~~~f~ 274 (296)
T 3qij_A 206 VDLHKAKDL-EG-VDIILGVCSSGLLVYKDKLR--INRFPW-PKVLKISYK------RSSFFIKIRPGEQEQYESTIGFK 274 (296)
T ss_dssp CEEEEEECT-TS-CEEEEEECSSEEEEEETTEE--EEEEEG-GGEEEEEEE------TTEEEEEEC-------CEEEEEE
T ss_pred ceEEEEEcC-CC-CEEEEEECCCeEEEEeCCCe--EEEEEh-hhcCEEEec------CCEEEEEEecCccCCccceEEEE
Confidence 456666654 23 36789999999999999873 589999 799988862 35899999875432 34678887
Q ss_pred hhh
Q 000052 102 SRF 104 (2592)
Q Consensus 102 s~~ 104 (2592)
++.
T Consensus 275 ~~~ 277 (296)
T 3qij_A 275 LPS 277 (296)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 116
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=30.16 E-value=1.2e+02 Score=34.66 Aligned_cols=93 Identities=8% Similarity=0.073 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHh-hhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeEecccc
Q 000052 104 FRASILTELHRI-RWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAY 181 (2592)
Q Consensus 104 ~Ra~lLT~l~r~-r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~-g~~~~~y~y~dm~~~~i~~l~d~~ 181 (2592)
--.+++-++.+- +. +..+..|.+|.|.|++.||..+|..+ +++++-..-+.|. +.-+ |.
T Consensus 32 ~G~dV~~~Ai~kl~~--------------~~~~~k~~~V~L~VS~~gI~v~d~~t~~e~l~~~~I~~IS---Fc~v-d~- 92 (185)
T 2ysz_A 32 VGMDTLNSAIENLMT--------------SSSKEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK- 92 (185)
T ss_dssp SCHHHHHHHHHHHHH--------------HSCTTTSCEEEEEEETTEEEEEESSCSSCEEEEECTTTCC---EEEC-CS-
T ss_pred CcHHHHHHHHHHHHh--------------ccccccCceEEEEEecCEEEEEecCCCcceeeeccEEEee---eecc-CC-
Confidence 345777777653 31 11245699999999999999999877 5788887766664 5533 32
Q ss_pred CCCCCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHHH
Q 000052 182 GKRSETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLTK 220 (2592)
Q Consensus 182 ~~~~~~~gfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~~ 220 (2592)
..-.|+++---+ ..| -|+|.|+.+-.+|-..|.+
T Consensus 93 ----d~k~FaFI~~~~-~~~f~CHVF~c~k~A~~vs~aV~~ 128 (185)
T 2ysz_A 93 ----DVHTFAFIMDTG-NQRFECHVFWCEPNAANVSEAVQA 128 (185)
T ss_dssp ----STTEEEEEEESS-SSCEEEEEEEESSCSTTHHHHHHH
T ss_pred ----CCcEEEEEecCC-CccEEEEEEEccCchHHHHHHHHH
Confidence 244665432233 333 4677776554555555544
No 117
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=30.09 E-value=1.1e+02 Score=34.58 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHh-hhhhcccccCCccccccccCCcccceEEEEeeceEEEecCCC-CceEEEeeccCCCccceeEecccc
Q 000052 104 FRASILTELHRI-RWVRLNAVAEFPVLHLRRRNSEWVPYKLKVTYVGVELTDLRS-GDLRWCLDFRDMDSPAIVLLSDAY 181 (2592)
Q Consensus 104 ~Ra~lLT~l~r~-r~~~~~~~~~~~~~~~~~~k~~w~p~~L~Vt~~~leqld~~~-g~~~~~y~y~dm~~~~i~~l~d~~ 181 (2592)
--.+++.++.+- +.+ ..+.+|.+|.|.|++.||..+|..+ .++++-..-++|. +.-+ |.
T Consensus 78 ~G~dVl~~AI~kl~~~--------------~~~~~~~~V~L~VS~~gI~v~d~~t~~evl~~c~l~~IS---Fcgv-d~- 138 (176)
T 2yt0_A 78 VGMDTLNSAIENLMTS--------------SSKEDWPSVNMNVADATVTVISEKNEEEVLVECRVRFLS---FMGV-GK- 138 (176)
T ss_dssp SCHHHHHHHHHHHHHH--------------SCTTTSCEEEEECGGGEEEEEESSCTTCEEEEEETTTCC---EEEE-CS-
T ss_pred ccHHHHHHHHHHHHhc--------------cCcccCcceEEEEcCCEEEEEecCCCcceecccceEEee---eEcc-CC-
Confidence 556788888653 311 1245699999999999999999887 5888888777775 5533 32
Q ss_pred CCCCCCCcEEEeeccCCCcc--ccccCCCCChHHHHHHHHH
Q 000052 182 GKRSETGGFVLCPLYGRKSK--AFQAAPGTTNSAIVSSLTK 220 (2592)
Q Consensus 182 ~~~~~~~gfvl~~~~g~~~r--~~l~~~~~~~~~ii~~i~~ 220 (2592)
..--|+++--.+ ..| -|+|.|+.+-.+|-+.|.+
T Consensus 139 ----d~k~FaFI~~~~-~~~f~CHVF~cek~A~~ls~aI~a 174 (176)
T 2yt0_A 139 ----DVHTFAFIMDTG-NQRFECHVFWCEPNAANVSEAVQA 174 (176)
T ss_dssp ----STTEEEEEEEEE-TTEEEEEEEEESSCSHHHHHHHHH
T ss_pred ----CCcEEEEEEeCC-CCCEEEEEEEccCChhHHHHHHHh
Confidence 134444321222 223 5778786555555555543
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=30.01 E-value=80 Score=36.80 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=63.4
Q ss_pred hcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHH
Q 000052 1668 DGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQ 1747 (2592)
Q Consensus 1668 e~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe 1747 (2592)
.+|+..|...+.++...-...+ .+.....-..|++|+...-....+++.+...+..+.-|+.++. ...+.+...++|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~--~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETS--GNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccc--hhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHH
Confidence 5799999999998854221110 1224556678899999999999999999999999988888875 444577778888
Q ss_pred HHHHHhCCH
Q 000052 1748 TIAHVSVSS 1756 (2592)
Q Consensus 1748 ~v~~~a~~~ 1756 (2592)
.+..+|.-+
T Consensus 119 LL~~lc~~~ 127 (233)
T 2f31_A 119 LLSALCILP 127 (233)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 888776543
No 119
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=29.68 E-value=2.1e+02 Score=35.87 Aligned_cols=130 Identities=11% Similarity=0.197 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhhccchhHHHHHHhhccCCcchHHHHHHHHHHHhcCCCCCCccccCchhhhhhhhhccc
Q 000052 498 TVMGFVACLRRLLTSRTAASHVMSFPAAVGRIMGLLRNGSEGVAAEAAGLIAILIGGGSGDTNMLTDSKGEQHATMMHTK 577 (2592)
Q Consensus 498 ~~~~~~~aLrRL~as~~gf~~~~~~p~~~~~v~~~L~~~~e~v~~~a~~~l~~l~~~~~~~~~~~~d~~~e~~~~~~~nK 577 (2592)
..-..+.|||=|+-++.|+..+..-|..+..+..+|...+..+...|+++|.++.- .++... +++.--..+-+.
T Consensus 74 ~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~-~~~~~G-----~~~~VL~Al~~~ 147 (386)
T 2bnx_A 74 NQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI-LPQPED-----MNERVLEAMTER 147 (386)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT-CCSSTT-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHc-CCCCCC-----hHHHHHHHHHHH
Confidence 33456899999999999999999999999999999998888899999999988553 222100 122211222233
Q ss_pred hhcccchhhHHHHHHhhcCCCChhHHHHHHHHHHHhhccCCCCCCCChHHHHHHHHHHHhhh
Q 000052 578 SVLFSQQGYLIVLVNRLRPMSVSPLLSMAVVEVLETMICEPHSETTQYTVFVELLRQVAGLR 639 (2592)
Q Consensus 578 s~ll~~~~f~~~L~~~l~~~~~~aLv~~a~l~~l~~~lC~P~seTT~~~~F~~ll~~va~~g 639 (2592)
.. ++....+..|++.++....- =...+.+.|+-..+..| .|-.....+-.+.-.+|
T Consensus 148 ~~-~~e~~RF~~lv~~l~~~~~~-e~~~a~m~lIN~lv~~~----~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 148 AE-MDEVERFQPLLDGLKSGTSI-ALKVGCLQLINALITPA----EELDFRVHIRSELMRLG 203 (386)
T ss_dssp HH-HHTSCTTHHHHHHTSTTSCH-HHHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHTT
T ss_pred HH-hCchhhHHHHHHHHHcCChH-HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCC
Confidence 33 36667788899988864332 34455666777777554 36666666666663333
No 120
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=28.65 E-value=1e+02 Score=33.91 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCcccceEEEEeeceEEEecC-----CCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc--ccccCC
Q 000052 135 NSEWVPYKLKVTYVGVELTDL-----RSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK--AFQAAP 207 (2592)
Q Consensus 135 k~~w~p~~L~Vt~~~leqld~-----~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r--~~l~~~ 207 (2592)
+.+|.||.|.|++.||..+|+ .+..+++-..-++|. |.-+ | + +.--|++.---| ..| -|+|.|
T Consensus 50 ~~~w~~v~l~Vs~~~i~v~~~~~~~~~~~~~l~~c~vr~IS---Fcgv-g---k--d~r~FaFI~~~~-~~~f~CHVF~c 119 (144)
T 2dyq_A 50 RNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVT---FIGV-G---R--DPHTFGLIADLG-RQSFQCAAFWC 119 (144)
T ss_dssp SCCCEEEEEEECSSEEEEEECC------CCCSSEEEGGGEE---EEEE-C---S--STTEEEEEEECS-SSCEEEEEEEC
T ss_pred cccCcceEEEEeccceEEeccccccccccceeeeceEEEEe---eeec-C---C--CCcEEEEEEeCC-CCcEEEEEEec
Confidence 457999999999999999987 367777776666554 4432 2 1 234444321122 222 688888
Q ss_pred CCChHHHHHHHHHH
Q 000052 208 GTTNSAIVSSLTKT 221 (2592)
Q Consensus 208 ~~~~~~ii~~i~~~ 221 (2592)
+++-.+|-+.|.++
T Consensus 120 e~~A~~ls~aV~~A 133 (144)
T 2dyq_A 120 QPHAGGLSEAVQAA 133 (144)
T ss_dssp SSCTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 76766666666554
No 121
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=27.15 E-value=1.2e+02 Score=36.29 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHHHHcCCh---hhh
Q 000052 2066 PDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAAAKHGGV---VYI 2141 (2592)
Q Consensus 2066 ~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqal~~Ggv---lYL 2141 (2592)
+...++..+.++++.+. .++.-..++..++..+.+ +.-.+..+|+.+..+....-+. ...++ ..+
T Consensus 144 ~k~~vR~~~r~il~~l~-------~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~i 212 (266)
T 2of3_A 144 AKDNMRTSVRDIVNVLS-------DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTV 212 (266)
T ss_dssp SSHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHH
Confidence 34568888888888765 233334467777777754 4445667888877766421111 12233 344
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcHHHHHHH
Q 000052 2142 LELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPDGLVSVI 2193 (2592)
Q Consensus 2142 L~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~~fv~am 2193 (2592)
..+|.+ .+..+|..|...+..+-.. .|.+|...+.+ ||+.-.+.+
T Consensus 213 a~ll~D----~d~~VR~aAl~~lve~y~~--~Gd~v~k~lg~-L~~~~~~~l 257 (266)
T 2of3_A 213 APFVGD----KDVNVRNAAINVLVACFKF--EGDQMWKAAGR-MADKDKSLV 257 (266)
T ss_dssp GGGGGC----SSHHHHHHHHHHHHHHHHH--HTTHHHHHHCC-CCHHHHHHH
T ss_pred HHHHcC----CCHHHHHHHHHHHHHHHHH--hhHHHHHHHhc-CCHHHHHHH
Confidence 455544 4789999999998888765 79999988877 677555444
No 122
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=26.44 E-value=47 Score=43.56 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=50.0
Q ss_pred cEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehhhhhHHHHHHHHh
Q 000052 37 KRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRI 115 (2592)
Q Consensus 37 kRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs~~Ra~lLT~l~r~ 115 (2592)
.=++.|+..||.-|++++-++.+.|+| ++|.++... .++.|+|++. + | ++.|.|. .++-+++|...
T Consensus 467 ~l~LgV~~~GI~v~~~~~k~~l~~~~~-~~I~~~~~~-----~~~~f~i~~~--~--~--~l~f~T~-qa~~i~~LI~~ 532 (555)
T 3au4_A 467 ELWLGVSADAVSVYKRGEGRPLEVFQY-EHILSFGAP-----LANTYKIVVD--E--R--ELLFETS-EVVDVAKLMKA 532 (555)
T ss_dssp EEEEEECSSEEEEEETTCSSCSEEEEG-GGEEEEEEE-----ETTEEEEEET--T--E--EEEEECT-THHHHHHHHHH
T ss_pred eEEEEEcccceEEECCCCCeeEEEEEh-hheeeecCC-----CCCEEEEEEC--C--c--EEEEECC-CHHHHHHHHHH
Confidence 456999999999999999999999999 798877620 1357988865 2 3 4999985 46666666653
No 123
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=23.80 E-value=37 Score=41.25 Aligned_cols=69 Identities=14% Similarity=0.312 Sum_probs=0.0
Q ss_pred cccEEEEEecCeeeeeCCCCcccccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehhhhhHHHHHHHH
Q 000052 35 RYKRILCISNATIITLDPNTLAVTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHR 114 (2592)
Q Consensus 35 kYkRif~Ig~~~i~T~nP~tl~vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs~~Ra~lLT~l~r 114 (2592)
+|-+|.+.....|... +..+++=+.. +||..+.. ..++||+|.+..+| .+|.|+|..|.+|+--+.-
T Consensus 213 ~~lQi~~~~k~~i~~~---~~~~nDVy~l-sdI~ev~~-----~~~~eFti~~~n~~----~~l~f~S~~~~eIv~~i~~ 279 (290)
T 3peg_A 213 TAVQVTSAERTKVLGQ---SVFLNDIYYA-SEIEEICL-----VDENQFTLTIANQG----TPLTFMHQECEAIVQSIIH 279 (290)
T ss_dssp SEEEEEESSCEEETTE---EECCEEEEET-TTEEEEEE-----EETTEEEEEETTCS----SCEEEECTTHHHHHHHHHH
T ss_pred CEEEEEEeccEEcccc---CceeEEEEEe-eeeeEEEe-----cCCCceEEEEeCCc----EEEEEeCcCHHHHHHHHHH
Q ss_pred hh
Q 000052 115 IR 116 (2592)
Q Consensus 115 ~r 116 (2592)
-+
T Consensus 280 a~ 281 (290)
T 3peg_A 280 IR 281 (290)
T ss_dssp HH
T ss_pred HH
No 124
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=23.73 E-value=1.9e+02 Score=37.46 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHhhCcchHHHHHHHHHHhhcchHHHHHHHHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHh
Q 000052 2104 MLHYAPACREGVLHVLYALASTPELAWAAAKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLAR 2183 (2592)
Q Consensus 2104 lL~~~p~~~~~vL~~L~aL~S~~~LVkqal~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsK 2183 (2592)
....=|++...++++++.||. +...++|.++.+-|-.++.| -+=+||.-+|.+
T Consensus 55 ffk~FP~l~~~Ai~a~lDLcE--------------------------Ded~~IR~qaik~Lp~~ck~-~~i~kiaDvL~Q 107 (507)
T 3u0r_A 55 FFKHFPELADSAINAQLDLCE--------------------------DEDVSIRRQAIKELPQFATG-ENLPRVADILTQ 107 (507)
T ss_dssp HGGGCGGGHHHHHHHHHHHHT--------------------------CSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHH
T ss_pred HHhhChhhHHHHHHHHHHHHh--------------------------cccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHH
Confidence 344557777778877777773 12344555555555555555 445555555555
Q ss_pred hCcH-----------HHHHHHhcCchhhHHHhhcccccCcccccCHHHHHHHHHHHHH
Q 000052 2184 FLPD-----------GLVSVIRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQIST 2230 (2592)
Q Consensus 2184 fLP~-----------~fv~amrdsP~~a~v~~fds~~EnPELIWn~~mR~~v~~~i~~ 2230 (2592)
+|-. .+++-++-+|..+.-.+|.+... . ++.+|+++-.+|..
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~-~----~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ-G----EDIVRERAIKFLST 160 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S----CHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc-c----chHHHHHHHHHHHH
Confidence 5543 78888888987665556655544 2 47888887777743
No 125
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=22.41 E-value=1.3e+02 Score=36.67 Aligned_cols=91 Identities=13% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCccEEEEEEEeec------------ccccccEEEEEecCe-----eee----eCC-CCccccccccccccccccccccc
Q 000052 18 ETEYLARYLVVKHS------------WRGRYKRILCISNAT-----IIT----LDP-NTLAVTNSYEVASDFEGATPIIG 75 (2592)
Q Consensus 18 ~~~~~a~y~vtKhS------------WrGkYkRif~Ig~~~-----i~T----~nP-~tl~vTN~W~y~~d~~~i~p~~~ 75 (2592)
++.||+---|+|-| =+.|.+||+||.... |.- .|. .++.+--+|+. .|+..|.-.+
T Consensus 105 ~ErYITHVrV~Eds~~ps~pPp~~s~~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~ngsFsIGKTW~L-~ELk~Id~~~- 182 (320)
T 3a58_A 105 PNNYITHVRIIEDSKFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQL-TELVRVEKDL- 182 (320)
T ss_dssp CCEEEEEEEEEEESSSTTSCCCTTCCGGGEEEEEEEEEECSSCTTCEEEEEEEECGGGCEEEEEEEEG-GGCCEEEECS-
T ss_pred cceEEEEEEEEecccCCCCCCCcccCccccCceEEEEEEecCCCceEEEEEEEecCCCceEecceech-hhhhhhhccc-
Confidence 46888888888832 367889999998665 322 334 46899999999 7998877311
Q ss_pred CCCCCCcEEEEEeecCCCcccceeeehhhhhHHHHHHHHhh
Q 000052 76 RDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRIR 116 (2592)
Q Consensus 76 ~~~~~~eF~i~~rk~~k~K~~~mkFSs~~Ra~lLT~l~r~r 116 (2592)
..+.+|+|++.| ...=..-+..+|.-.|..|.++.
T Consensus 183 --~~~~gF~LTl~K----~YyW~A~s~kER~~FI~sLvKiy 217 (320)
T 3a58_A 183 --EISEGFILTMSK----KYYWETNSAKERTVFIKSLITLY 217 (320)
T ss_dssp --SCTTEEEEESSS----EEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCCCceEEEeCC----ceEEecCCHHHHHHHHHHHHHHH
Confidence 123799999844 22222234679999999999875
No 126
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=21.54 E-value=42 Score=39.95 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=35.8
Q ss_pred cccccccccccccccccccCCCCCCcEEEEEeecCCCcccceeeehhhhhHHHHHHHHhh
Q 000052 57 VTNSYEVASDFEGATPIIGRDDNANEFNISVRTDGRGKFKAFKFSSRFRASILTELHRIR 116 (2592)
Q Consensus 57 vTN~W~y~~d~~~i~p~~~~~~~~~eF~i~~rk~~k~K~~~mkFSs~~Ra~lLT~l~r~r 116 (2592)
.++=+.. +|++.|.- +.++||+|++..+ + .+|.|+|..|.||+--+.--+
T Consensus 198 ~ndVy~l-s~i~~v~t-----~~~~eFtl~~~n~---~-~~l~f~S~~~~eIv~~i~~a~ 247 (256)
T 3pg7_A 198 LNDIYYA-SEIEEICL-----VDENQFTLTIANQ---G-TPLTFMHQECEAIVQSIIHIR 247 (256)
T ss_dssp CEEEEEG-GGEEEEEE-----EETTEEEEEETTC---C-SCEEEECTTHHHHHHHHHHHH
T ss_pred eEEEEEe-eeeEEEec-----CCCCCeEEEEeCC---c-EEEEEeCcCHHHHHHHHHHHH
Confidence 4455555 78877632 2468999998543 2 469999999999998776543
No 127
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.43 E-value=6.9e+02 Score=31.06 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhhCccchhhccccccccccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHH
Q 000052 2026 LQFGLTSLQNILTSNPNLASIFSTKEKLLPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQML 2105 (2592)
Q Consensus 2026 l~maL~AL~nLL~~nP~La~~~~~~~~L~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL 2105 (2592)
+..++..|+..++.-+.++-.|+..+.+..|+..... ...+++..+|..+..+-.+-.--+.|.+....+..+..++
T Consensus 135 lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 135 LRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHH
Confidence 4567888888888889999999999888777776643 3678999999999998888666666655444555555444
Q ss_pred hhC-cchHHHHHHHHHHhhc----chHHHHHHHH-----cC--ChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCC
Q 000052 2106 HYA-PACREGVLHVLYALAS----TPELAWAAAK-----HG--GVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMH 2173 (2592)
Q Consensus 2106 ~~~-p~~~~~vL~~L~aL~S----~~~LVkqal~-----~G--gvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~Dklh 2173 (2592)
-+. +.....+|++|..++. +..+|.+++. .| -+..|+.+|-.. +....+...-+-.|+.++..- .-
T Consensus 212 ~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~elq~~amtLIN~lL~~-ap 289 (339)
T 3dad_A 212 ASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-NGADPELLVYTVTLINKTLAA-LP 289 (339)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHHHHHHHHHHHHHHHH-CS
T ss_pred cCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHhc-CC
Confidence 432 2334558888877764 4457777776 22 366778888521 234677777777777777552 22
Q ss_pred ChHHHHHHHhhCcHHHHHHHhcCchhhHHHh-hcccccCccc
Q 000052 2174 GPRVAITLARFLPDGLVSVIRDGPGEAVVSA-LEQTTETPEL 2214 (2592)
Q Consensus 2174 GPrV~~~LsKfLP~~fv~amrdsP~~a~v~~-fds~~EnPEL 2214 (2592)
+++-+ .-+++++...--+.+|+- +......|||
T Consensus 290 d~d~~--------~di~d~Le~~gi~~~i~r~l~~~~~~~~l 323 (339)
T 3dad_A 290 DQDSF--------YDVTDALEQQGMEALVQRHLGTAGTDVDL 323 (339)
T ss_dssp SHHHH--------HHHHHHHHHTTHHHHHHHHHSCTTSCHHH
T ss_pred ChhHH--------HHHHHHHHHccHHHHHHHHHhccCCCHHH
Confidence 22311 145555555444333333 3333345555
No 128
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=21.16 E-value=1.8e+02 Score=31.54 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=51.7
Q ss_pred ccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccCCCcc----ccccCCCCChHH
Q 000052 138 WVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYGRKSK----AFQAAPGTTNSA 213 (2592)
Q Consensus 138 w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g~~~r----~~l~~~~~~~~~ 213 (2592)
--++.|+||+..|...++ +.....++|+.+...|- | .+.|.+. -|+.+- +|.|.+ .+-++
T Consensus 26 ~g~~~L~lt~~~L~L~~~--~~~~~~Wp~~~LRrYG~----d-------~~~FsFE--aGRRC~tGeGiF~F~t-~~~~~ 89 (129)
T 1xr0_B 26 LGSGIMELTDTELILYTR--KRDSVKWHYLCLRRYGY----D-------SNLFSFE--SGRRCQTGQGIFAFKC-ARAEE 89 (129)
T ss_dssp CCCEEEEECSSCEEEEET--TTEEEEECSTTEEEEEE----C-------SSEEEEE--ECSCSTTCSEEEEEEC-SCHHH
T ss_pred ceeEEEEEecCEEEEEeC--CCCeeEcchHHhhhcCc----c-------CCEEEEE--cCCCCCCCCcEEEEEc-CCHHH
Confidence 348999999999998875 55667889999985443 3 3677663 454333 788887 47777
Q ss_pred HHHHHHHHHhhhcCeEE
Q 000052 214 IVSSLTKTAKSMVGLSL 230 (2592)
Q Consensus 214 ii~~i~~~A~~~~G~~i 230 (2592)
|.+.+... .+...+++
T Consensus 90 If~~l~~~-i~~~s~s~ 105 (129)
T 1xr0_B 90 LFNMLQEI-MQNNSINV 105 (129)
T ss_dssp HHHHHHHH-HHHTTCCC
T ss_pred HHHHHHHH-HhccCccc
Confidence 77777654 44344443
No 129
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.69 E-value=6e+02 Score=27.53 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCChhhHHHHHHHHHcCChhHHHHHHhhchhHHHHHHHHhh-CcchHHHHHHHHHHhhcchHHHHHH
Q 000052 2054 LPLFECFSVPFAPDSNIPQLCLNVLSLLTTCASCLEAMVADGSSLLLLLQMLHY-APACREGVLHVLYALASTPELAWAA 2132 (2592)
Q Consensus 2054 ~~LF~~L~~~~~~~~~vq~~aL~VL~~ls~n~~CVeaIA~~~~vl~~Ll~lL~~-~p~~~~~vL~~L~aL~S~~~LVkqa 2132 (2592)
..++++|.. +++.++..|+..|..+.. ...+..|+.++.. .+..+..++..|..+...
T Consensus 17 ~~~i~~L~~---~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 17 EMYIKNLQD---DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHTTC---SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Q ss_pred HHcCChhhhHHhhcCCCCCCcHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhCcH-------HHHHHHhcCchhhHHHhh
Q 000052 2133 AKHGGVVYILELLLPSQQETPLQQRAAAASLLGKLVGQPMHGPRVAITLARFLPD-------GLVSVIRDGPGEAVVSAL 2205 (2592)
Q Consensus 2133 l~~GgvlYLL~lL~~~~e~~~~~~R~~aA~lL~kM~~DklhGPrV~~~LsKfLP~-------~fv~amrdsP~~a~v~~f 2205 (2592)
..+..|+.+|.+. ++.+|..++..|+++ ..|.....|.++|-. .-+.++..-....++..+
T Consensus 76 ---~~~~~L~~~l~d~----~~~vr~~a~~aL~~~-----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L 143 (201)
T 3ltj_A 76 ---RAVEPLIKALKDE----DGWVRQSAAVALGQI-----GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPL 143 (201)
T ss_dssp ---GGHHHHHHHTTCS----SHHHHHHHHHHHHHH-----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ---HHHHHHHHHHcCC----CHHHHHHHHHHHHHh-----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHH
Q ss_pred cccccCcccccCHHHHHHHHHHHHHH
Q 000052 2206 EQTTETPELVWTPAMAASLSAQISTM 2231 (2592)
Q Consensus 2206 ds~~EnPELIWn~~mR~~v~~~i~~~ 2231 (2592)
...-.+| +...|......+..+
T Consensus 144 ~~~l~d~----~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 144 IKALKDE----DGWVRQSAADALGEI 165 (201)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHh
No 130
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=20.41 E-value=1.4e+02 Score=32.92 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=49.4
Q ss_pred cccceEEEEeeceEEEecCCCCceEEEeeccCCCccceeEeccccCCCCCCCcEEEeeccC-------CCccccccCCCC
Q 000052 137 EWVPYKLKVTYVGVELTDLRSGDLRWCLDFRDMDSPAIVLLSDAYGKRSETGGFVLCPLYG-------RKSKAFQAAPGT 209 (2592)
Q Consensus 137 ~w~p~~L~Vt~~~leqld~~~g~~~~~y~y~dm~~~~i~~l~d~~~~~~~~~gfvl~~~~g-------~~~r~~l~~~~~ 209 (2592)
++..|.|.|+..||..+|+.++.++..|+-++|. +. ++.+ .+..-|+.+---. ....-|+|.+..
T Consensus 55 ~~~~v~L~VS~~gi~l~d~~tk~~~~~~~i~~IS---fc--a~d~---~~~r~FafIar~~~~~~~~~~~~~CHVF~~~~ 126 (160)
T 2ej8_A 55 RMTESHLLVTCDCLKLIDPQTQVTRLTFPLPCVV---LY--ATHQ---ENKRLFGFVLRTSSGRSESNLSSVCYIFESNN 126 (160)
T ss_dssp CCCEEEEEEESSEEEEECTTTCCEEEEEEGGGEE---EE--EEET---TEEEEEEEEEEECC------CEEEEEEEEESS
T ss_pred cCCEEEEEEECCeEEEEeCCCCeEEEEeeCCeEE---EE--EecC---CCCeEEEEEEecCCcccCCCccEEEEEEEcch
Confidence 5678999999999999999999999999998886 33 3321 0123444321121 112358888854
Q ss_pred ChHHHHHHHHH
Q 000052 210 TNSAIVSSLTK 220 (2592)
Q Consensus 210 ~~~~ii~~i~~ 220 (2592)
.-.+|+..|-.
T Consensus 127 ~A~~I~~tigq 137 (160)
T 2ej8_A 127 EGEKICDSVGL 137 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45556666533
No 131
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=20.19 E-value=1.6e+02 Score=36.93 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=63.1
Q ss_pred hcCHHHHHHHHHHhhhcccCCCCCCCcchhhhhhhhhhhhhhccChHHHHHHHhhcchHHHHHHhhccccchhHHHHHHH
Q 000052 1668 DGGIQLLSTLLSRCMCVVQKTTPAMEPSAVIVTNVMRTFSVLSQFESARTEVLQFSGLVQDIVHCTELELVPGAVDAALQ 1747 (2592)
Q Consensus 1668 e~Gi~~L~~~lsrC~~vl~~~s~~~~~~~~v~~~~~r~~~v~a~F~~cr~~i~~~~~l~~di~~~l~l~~~~~l~~aALe 1747 (2592)
.+|+..|...+.++...-...+ .+....+-..|++|+...-....+++.+...+..+.-|++++. ...+.+...++|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~--~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETS--GNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTC--CTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccc--cchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCchHHHHHHH
Confidence 5799999999998854221110 1223556678999999999999999999999999988888875 334567777888
Q ss_pred HHHHHhCC
Q 000052 1748 TIAHVSVS 1755 (2592)
Q Consensus 1748 ~v~~~a~~ 1755 (2592)
.+..+|--
T Consensus 123 LL~alc~~ 130 (386)
T 2bnx_A 123 LLSALCIL 130 (386)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 88877654
Done!