BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000053
(2576 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1 OS=Mus musculus GN=Trank1
PE=2 SV=3
Length = 2999
Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 279/1119 (24%), Positives = 481/1119 (42%), Gaps = 197/1119 (17%)
Query: 962 YFQVLKVWDIL--------PLENVQNLLTR-LDNIFVKNLEVPKNWATTSNIV---RFKG 1009
Y +++++WDI+ + + + TR L + K L+ ++N+ R
Sbjct: 967 YTEIIRIWDIVLDHCKLSDSIMAICSAYTRGLSCVLRKKLKGINKGQVSANMKIQKRIPR 1026
Query: 1010 LADNESGSDYSGAASDGRSYAENSNVSDSLLLMKFYSLSLGVVRHLLSDRDARELDLPFE 1069
++ ++ S D + S V +MKF+S S + ++L+D A ++ PF
Sbjct: 1027 CYVEDTEAEKSLEQVDPEYFPPASAVETEYSIMKFHSFSTNMALNILNDMTA-TVEYPFR 1085
Query: 1070 VTDEQLDMI-LFPRS---TFILGRSGTGKTT-----------------------VLIMKL 1102
V + + +I L P+ ++GRSGTGKTT +L ++
Sbjct: 1086 VGELEYAVIDLNPKPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAEQAGSPLLSKQI 1145
Query: 1103 FQKEKLH--------------------NMALEGFFGVNNSSQETEA---------EKDLE 1133
K +L ++ +E G++ QE+EA D +
Sbjct: 1146 LPKRRLEVEPGKEGPGREEEEHEEEEGSIKVETVDGIDEE-QESEACAGGATVEPAGDSQ 1204
Query: 1134 KTERVI---------LRQLFVTVSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDID 1184
E + L Q+FVT + LC V+++ + ST K + +D +
Sbjct: 1205 GAEGCVPDHPHQLEHLHQIFVTKNHVLCQEVQRNFIELSKST---KATSHYKPLDPN--- 1258
Query: 1185 DAEKLKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCNSYFERFHN------------- 1231
KL+D+ + +++PL +T + L++LD +L +F R +
Sbjct: 1259 -VHKLQDLRD-------ENFPLFVTSKQLLLLLDASLPKPFFLRNEDGSLKRTIVGWSTQ 1310
Query: 1232 ------IWK----------NYGQLQNSKSVFIETIIRKKEVNYERFSSSYWPHFNAQLAR 1275
W+ NY + + + + V +E F++ WP +
Sbjct: 1311 EEFSIPSWEEDDEEVEADGNYNEEEKATETQTGDSDPRVYVTFEVFTNEIWPKM-IKGRS 1369
Query: 1276 KLDPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVNLSETRNSSLSRQKRERIYDIFESY 1335
+P+ ++ EI S +KG +++ +G+L E Y L R+ + ++ R IY +F Y
Sbjct: 1370 SYNPALIWKEIKSFLKGSFEALSCPHGRLTEEAYKKLGRKRSPNF-KEDRSEIYSLFCLY 1428
Query: 1336 EQMKMRNGEFDLADLVNDLHHRLKEESYKGDEFHFVYIDEVQDLTMSQVALFKYVCKNIE 1395
+Q++ + G FD D++ +L RL + H +Y DE+QD T +++AL C N
Sbjct: 1429 QQIRSQKGYFDEEDVLYNLSWRLSKLRVLPWSIHELYGDEIQDFTQAELALL-MKCINDP 1487
Query: 1396 EGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNF 1455
+GDTAQ+I +G+ FRF D+ SLF+ SR+ D + R+ I L QN+
Sbjct: 1488 NAMFLTGDTAQSIMKGVAFRFSDLLSLFH----YASRST-VDKQCAVRKPKRIHQLYQNY 1542
Query: 1456 RTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTG 1515
R+H G+LNLA +++LL +FP S D L ++ L G P LL+S + + + GN
Sbjct: 1543 RSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTLLDSCSVSDLAILLRGNKR 1602
Query: 1516 EVGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQDVLLYKFFSASP 1575
+ + FGA QVILV ++ +++I +G ALVLT+ E+KGLEF DVLLY FF+ S
Sbjct: 1603 KT--QPIEFGAHQVILVANEKAKEKIPEELG-LALVLTVYEAKGLEFDDVLLYNFFTDSE 1659
Query: 1576 LKNQWRVVYEYMKEQD-----------LLDSTSPGSFPSF--NEVKHNILCSELKQLYVA 1622
+W+++ + D L+ +SP S N + +L ELKQLY A
Sbjct: 1660 AYKEWKIISSFTPSSDSREEKWPLVDVPLERSSPSQARSLMVNPEMYKLLNGELKQLYTA 1719
Query: 1623 ITRTRQRLWIWENKEEFSKPMFDYWKKRFLVQVRRLDDS--LAQAMQV-ASSPEEWKSRG 1679
ITR R LWI++ E P F Y+ +R VQV + D++ +M V S+P EW +G
Sbjct: 1720 ITRARVNLWIFDENLEKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPYEWIIQG 1779
Query: 1680 IKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNP 1739
+ + K Q +++A C++K D + + + A + +P
Sbjct: 1780 ----DYYAK-----------HQCWKVAAKCYQKG-DALEKEKLALAHYTALNMKSKKFSP 1823
Query: 1740 LEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAG 1799
E + E AK + + + KC E++ + + CE G
Sbjct: 1824 KEKELQYLELAKTYLECNEPKLSLKCLSYAKEFQLSAQL----CER------------LG 1867
Query: 1800 CYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKK--- 1856
+ AA Y R + + + FD+ L+ + + + V+ +EM K
Sbjct: 1868 KIRDAAYFYKRSQCFQDAFRCFEQIQEFDLALRMYCQEELFEEAAIA-VEKYEEMLKNKT 1926
Query: 1857 ---------IEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGCFDELLVL 1907
Q +L++ A + N +K MM + D + FL S+ C E L
Sbjct: 1927 FPIPKLSYSASQFYLEAAAKYLSA-NKSKEMMAVLSKLDVEDQL-VFLKSRKCLAEAAEL 1984
Query: 1908 EEESESFMDAANIARLRGDILRTVDLLQKVGNFKEACNL 1946
+AA + + G +L L +F+ +C L
Sbjct: 1985 LNREGRREEAALLMKQHGCLLEAARLTAN-KDFQASCLL 2022
>sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1
PE=2 SV=4
Length = 2925
Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 199/698 (28%), Positives = 335/698 (47%), Gaps = 68/698 (9%)
Query: 1256 VNYERFSSSYWPHFNAQLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVNLSET 1315
V +E F + WP +P+ ++ EI S +KG +++ +G+L E Y L
Sbjct: 1277 VTFEVFKNEIWPKMTKGRT-AYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRK 1335
Query: 1316 RNSSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYKGDEFHFVYIDE 1375
R + ++ R IY +F Y+Q++ + G FD D++ ++ RL + H +Y DE
Sbjct: 1336 RCPNF-KEDRSEIYSLFSLYQQIRSQKGYFDEEDVLYNISRRLSKLRVLPWSIHELYGDE 1394
Query: 1376 VQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNG 1435
+QD T +++AL C N +GDTAQ+I +G+ FRF D+RSLF+ SRN
Sbjct: 1395 IQDFTQAELALL-MKCINDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFH----YASRNT- 1448
Query: 1436 NDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPP 1495
D + R+ I L QN+R+H G+LNLA +++LL +FP S D L ++ L G P
Sbjct: 1449 IDKQCAVRKPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKP 1508
Query: 1496 ILLESGDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIV 1555
+LES + + + GN + + FGA QVILV ++ +++I +G ALVLTI
Sbjct: 1509 TVLESCSVSDLAILLRGNKRKT--QPIEFGAHQVILVANETAKEKIPEELG-LALVLTIY 1565
Query: 1556 ESKGLEFQDVLLYKFFSASPLKNQWRVVYEYM------KEQDL------LD--STSPGSF 1601
E+KGLEF DVLLY FF+ S +W+++ + +E++ LD +S G
Sbjct: 1566 EAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPTSTDSREENRPLVEVPLDKPGSSQGRS 1625
Query: 1602 PSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEEFSKPMFDYWKKRFLVQVRRLDDS 1661
N + +L ELKQLY AITR R LWI++ E P F Y+ +R VQV + D++
Sbjct: 1626 LMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDEN 1685
Query: 1662 --LAQAMQV-ASSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYW 1718
+M V S+P EW ++G + + K Q +++A C++K
Sbjct: 1686 KDFDDSMFVKTSTPAEWIAQG----DYYAK-----------HQCWKVAAKCYQKGGAFEK 1730
Query: 1719 EGRSKA--SGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776
E + A + L + ++S P E ++ E AK + + + KC E++ +
Sbjct: 1731 EKLALAHDTALSMKSKKVS---PKEKQLEYLELAKTYLECKEPTLSLKCLSYAKEFQLSA 1787
Query: 1777 TIYLERCEE-PELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYIS 1835
+ CE ++ A + + CYK A + + L + + +LF+ +
Sbjct: 1788 QL----CERLGKIRDAAYFYKRSQCYKDAFRCFEQIQEFDLALKMYCQEELFEEAAIAVE 1843
Query: 1836 YWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMK------------FVR 1883
+++ T + SK Q +L++ A + N K MM F++
Sbjct: 1844 KYEEMLKTKT--LPISKLSYSASQFYLEAAAKYL-SANKMKEMMAVLSKLDIEDQLVFLK 1900
Query: 1884 AFHSMDLIRNFLNSKGCFDELLVLEEESESFMDAANIA 1921
+ + + LN +G +E +L ++ ++AA +
Sbjct: 1901 SRKRLAEAADLLNREGRREEAALLMKQHGCLLEAARLT 1938
Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 25/164 (15%)
Query: 962 YFQVLKVWDIL--------PLENVQNLLTR-LDNIFVKNL------EVPKNWATTSNIVR 1006
Y +++++WDI+ ++ + N R L + K L +V N I R
Sbjct: 891 YTEIIRIWDIVLDHCKLADSIKAICNAYNRGLSCVLRKKLKGINKGQVSANMKIQKRIPR 950
Query: 1007 -FKGLADNESGSDYSGAASDGRSYAENSNVSDSLLLMKFYSLSLGVVRHLLSDRDARELD 1065
+ + E G ++ + + S V +MKF+S S + ++L+D A ++
Sbjct: 951 CYVEDTEAEKGREHV----NPEYFPPASAVETEYNIMKFHSFSTNMAFNILNDTTA-TVE 1005
Query: 1066 LPFEVTDEQLDMI-LFPRS---TFILGRSGTGKTTVLIMKLFQK 1105
PF V + + +I L PR ++GRSGTGKTT + +L++K
Sbjct: 1006 YPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKK 1049
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 177/292 (60%), Gaps = 15/292 (5%)
Query: 564 TASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESK 623
+ S+ +L ++ +K + ++IDEA Q E S IPL+ G K ++ GD QLP V S
Sbjct: 1570 SGSAHDVLATMGIK-FDTVIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSG 1627
Query: 624 VSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVE---KR 680
+ + +SLF R+ S +LL +QYRMHPSIS FP+S FY+ ++ D P ++ KR
Sbjct: 1628 AASNFKYNQSLFVRMEK-NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKR 1686
Query: 681 SYEKRFLPGPMYGPYSFINVFGGREE--FIEHSCRNMVEVSVVMKILLNLYKGWINSKE- 737
+ + P+ PY F ++ GR+E S NM E+ V ++++ L++ + N +
Sbjct: 1687 PWHQL---EPL-APYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDF 1742
Query: 738 KLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNG- 796
IGI+SPY Q+ ++++ + ++ ++DGFQG E++II+IS VR+++
Sbjct: 1743 TGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTK 1802
Query: 797 GSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCF 848
S+GF+ + RR+NVALTRA+ +W+LG++R+L +++ +W+ L++DAK R C
Sbjct: 1803 SSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCL 1853
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 169/308 (54%), Gaps = 11/308 (3%)
Query: 548 DLLKRFCLKRASLFFSTAS-SSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKH 606
D ++ L+ A++ F+T S S L + + + + ++IDEAAQ E + IPL + K
Sbjct: 452 DSIRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLA-TRCKQ 510
Query: 607 AVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYF 666
L GD QLPA V S V+ ++ +G S+FERL + +L QYRMHP I FP+ F
Sbjct: 511 VFLVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQF 570
Query: 667 YENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEH-----SCRNMVEVSVV 721
YE + D +E ++ + + +GP+ F ++ G+E +H S N+ EV V
Sbjct: 571 YEGALEDGSDIEAQT-TRDWHKYRCFGPFCFFDIHEGKES--QHPGATGSRVNLDEVEFV 627
Query: 722 MKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGG 781
+ I L + K + I+SPY QV +++ + A V + +VDGFQG
Sbjct: 628 LLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGR 687
Query: 782 EEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDD 841
E+D+ I S VR+N G IGF+SN RR+NV +TRA+ + ++G+ TL ++ +WK L++
Sbjct: 688 EKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL-KSDPLWKNLIES 746
Query: 842 AKARQCFF 849
A+ R F
Sbjct: 747 AEQRNRLF 754
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 5/304 (1%)
Query: 544 DLLEDLLKRFCLKRASLFFSTASSS-YMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLS 602
D+L+ ++ L+ A + +T S+S + L A ++IDEAAQ E S IPL+
Sbjct: 1474 DVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKY- 1532
Query: 603 GIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERL-SHLRHSKHLLSIQYRMHPSISFF 661
G + V+ GD QLP V SK S + + +SL+ R+ S LLSIQYRM+P IS F
Sbjct: 1533 GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRF 1592
Query: 662 PNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVV 721
P+ +FY +K+ D P + + + + P G Y F NV G S N+ E S +
Sbjct: 1593 PSKFFYNSKLLDGPNMSAVT-SRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFI 1651
Query: 722 MKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGG 781
+ + L + ++N + IG+V+PY +QV ++ + KY + + + +VDGFQG
Sbjct: 1652 LLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQ 1711
Query: 782 EEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDD 841
E+DIII S VRS+ G IGF+ + RR+NVALTRA+ L+I+GN + L + ++ +L++D
Sbjct: 1712 EKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQ-EDIFYSLIED 1770
Query: 842 AKAR 845
AK R
Sbjct: 1771 AKTR 1774
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 17/62 (27%)
Query: 231 LIWGPPGTGKTKTV-SMLLVIL------LQM----------KFRTLVCTPTIVAIKELAS 273
LI GPPGTGKTKT+ M+ +L LQ K + L+C P+ AI E+
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILL 1349
Query: 274 RV 275
R+
Sbjct: 1350 RI 1351
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 9/309 (2%)
Query: 542 EKDLLEDLLKRFCLKRASLFFSTASSSYMLHS-VAMKPLNF--LVIDEAAQLKESESTIP 598
E DLL ++ LK+A + +T S S H VA LNF ++IDEAAQ E ++ IP
Sbjct: 1334 EVDLLRKKAQKAILKQADVVCATLSGSG--HDLVAHSSLNFSTVIIDEAAQAVELDTIIP 1391
Query: 599 LQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS-HLRHSKHLLSIQYRMHPS 657
L+ G K +L GD QLP V SK + + +SLF R+ + + LLSIQYRMHP
Sbjct: 1392 LRY-GAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPD 1450
Query: 658 ISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVE 717
IS FP+ FY++++ D + +++ ++ + P + Y +V G S N+ E
Sbjct: 1451 ISHFPSKKFYDSRLEDGDNMAEKT-QQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEE 1509
Query: 718 VSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDG 777
V ++ ++ L + + IG+++PY +Q+ ++ KY S + + +VDG
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDG 1569
Query: 778 FQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKA 837
FQG E+DII S V+S + IGF+ + RR+NVALTRAR L I+GN TL + +W +
Sbjct: 1570 FQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETL-KTDDLWGS 1628
Query: 838 LVDDAKARQ 846
LVDDA +R+
Sbjct: 1629 LVDDALSRK 1637
Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 29/126 (23%)
Query: 218 KELLCTDSGATVQLIWGPPGTGKTKT----VSMLLVIL--------------LQMKFRTL 259
K ++C LI GPPGTGKTKT +S LLV L + K + L
Sbjct: 1136 KAIMCALDNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQIL 1195
Query: 260 VCTPTIVAIKELASRVVK-LVKESVERDCRDALFFPLGEILLLGNNERLKVDSGVEEIYL 318
+C P+ A+ E+ R+ + + E+ E+ + P ++ +GN E + V V ++ L
Sbjct: 1196 LCAPSNAAVDEVLLRLKRGFLLENGEK------YIP--RVVRIGNPETINV--SVRDLSL 1245
Query: 319 DYRVKR 324
+Y+ ++
Sbjct: 1246 EYQTEK 1251
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 167/318 (52%), Gaps = 27/318 (8%)
Query: 550 LKRFCLKRASLFFSTAS-SSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAV 608
++ L A + +T S S L + + ++IDEAAQ E+ + IP+Q G K V
Sbjct: 555 IRTLVLDEADIVATTLSFSGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQ-HGCKKVV 613
Query: 609 LFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYE 668
L GD QLPA + S ++ + + +SLF+RL ++S H+L+ QYRMH I FP+ +FY+
Sbjct: 614 LVGDPKQLPATIISPLAIKYKYDQSLFQRLQE-KNSPHMLTTQYRMHSLIRAFPSRHFYQ 672
Query: 669 NKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF-------GGREEFIEHSCRNMVEVSVV 721
+ + D P + R+ + P +GP F ++ GG F EH C+ +
Sbjct: 673 DLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK------MA 724
Query: 722 MKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGG 781
M + K + + IGI+SPY QV A++E + N G ++ +VDGFQG
Sbjct: 725 MYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREI----FKNYPGISID--TVDGFQGR 778
Query: 782 EEDIIIISTVRS--NNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALV 839
E +III S VR+ G IGF+S+ RR+NVALTR R L ILGN + L+ N+ W L+
Sbjct: 779 EREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKD-WNELI 837
Query: 840 DDAKARQCFFNADDDKDL 857
+ Q D+ L
Sbjct: 838 QHTQNNQQLIPVTKDQPL 855
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 157/279 (56%), Gaps = 13/279 (4%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSDEACFGRSLFERLSH 640
++IDE+ Q E E IP+ + G K +L GD QL P ++E K +D A +SLFERL
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAAD-AGLKQSLFERLIS 626
Query: 641 LRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYG-PYSFIN 699
L H L +QYRM+P +S FP++ FYE + + T+E+R+ P P+ G P F
Sbjct: 627 LGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 686
Query: 700 VFGGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQE- 756
+G REE + N +E +I+ L++ + ++ IG+++PY Q A I +
Sbjct: 687 NYG-REEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQ---IGVITPYEGQRAYILQY 742
Query: 757 -KLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRA 815
++ V+V SVD FQG E+D II+S VR+N +IGF+ +PRR+NV LTRA
Sbjct: 743 MQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRA 802
Query: 816 RHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADDD 854
++ L ILGN R+L RN ++W L+ + + C D
Sbjct: 803 KYGLVILGNPRSLARN-TLWNHLLIHFREKGCLVEGTLD 840
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 8/64 (12%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTIVAIKELAS-------RVVKLVK 280
+ LI GPPGTGKT T + ++ L ++ K R LVC P+ VA+ LA+ +VV+L
Sbjct: 425 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 484
Query: 281 ESVE 284
+S E
Sbjct: 485 KSRE 488
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 180/359 (50%), Gaps = 43/359 (11%)
Query: 510 IKYLLHKRRSECHFVLRKLLSSFNEL---------NLPSAVEKDLLE--DLLKRFCLKRA 558
+++L +SE H L++L EL NL A E+++ + D++ C+ A
Sbjct: 583 VRHLDTSEKSELH-KLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAA 641
Query: 559 SLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPA 618
L S ++ V +IDE+ Q E E IPL L G+K VL GD CQL
Sbjct: 642 DLRLS----NFRFRQV--------LIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGP 688
Query: 619 MVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVE 678
++ K + A +SLFERL L L +QYRMHP++S FP++ FYE + + T+
Sbjct: 689 VIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTII 748
Query: 679 KRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSK 736
+R P P+ F V G+EE N E + V K++ K +
Sbjct: 749 ERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPS 808
Query: 737 EKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGF-------AVKVMSVDGFQGGEEDIIIIS 789
+ IG+++PY Q A I Y+ G ++V SVD FQG E+D II+S
Sbjct: 809 Q---IGVITPYEGQRAYI-----VNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILS 860
Query: 790 TVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCF 848
VRSN IGF+++PRR+NVALTRAR+ + ILGN + L++ + +W L+ K +C
Sbjct: 861 CVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSK-QPLWNGLLTHYKEHECL 918
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 176 NATKEIQIDVSKKSLFVI--FLINRTSNRRIWNSLHMKGNLKIIKELLCTDSGA------ 227
A K +D + S ++ L + + + N+L + + + EL + A
Sbjct: 443 GAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKSVLQ 502
Query: 228 -TVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRVVKLVKESVER 285
+ LI GPPGTGKT T + ++ + Q + + LVC P+ VA+ +LA + + V R
Sbjct: 503 KPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK-ISATGLKVVR 561
Query: 286 DCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRL 325
C + R V S VE + L Y+V+ L
Sbjct: 562 LCAKS---------------REAVSSPVEYLTLHYQVRHL 586
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 151/275 (54%), Gaps = 17/275 (6%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E E IPL L G K VL GD QL ++ +K + +A +SLFERL L
Sbjct: 618 VLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMY-GPYSFINV 700
+ + L +QYRMHP +S FP++ FYE + + T +R + P P+ P F +
Sbjct: 677 QFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSN 736
Query: 701 FGGRE-EFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLG 759
G E S N E + V KI+ +K + + IG+++PY Q + I +
Sbjct: 737 LGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVKPAD---IGVITPYEGQRSYIVNTM- 792
Query: 760 SKYVNSAGFA------VKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALT 813
N+ F V+V SVD FQG E+D I++S VRSN IGF+S+PRR+NVALT
Sbjct: 793 ---QNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALT 849
Query: 814 RARHCLWILGNERTLTRNRSVWKALVDDAKARQCF 848
RA++ L I+GN + L ++ +W L+ K ++C
Sbjct: 850 RAKYGLVIIGNPKVLCKHE-LWHHLLVHFKDKKCL 883
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Query: 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK-FRTLVCTPTIVAIKELA 272
+ IK++L + LI GPPGTGKT T + ++ L +M + LVC P+ VA+ +L
Sbjct: 461 IAAIKQVLSN----PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLC 516
Query: 273 SR-------VVKLVKESVE 284
R VV+L +S E
Sbjct: 517 ERIHRTGLKVVRLTAKSRE 535
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 147/273 (53%), Gaps = 18/273 (6%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E E +P+ L G K +L GD CQL +V K + A +SLFERL L
Sbjct: 614 ILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
L +QYRMHP +S FP+++FYE + + E R + F P P F V
Sbjct: 673 GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDF-PWPQPERPMFFLVT 731
Query: 702 GGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAI----- 754
G+EE N E + V KI K I ++ IGI++PY Q A +
Sbjct: 732 QGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQRAYLVQYMQ 788
Query: 755 -QEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALT 813
Q L S+ +++ SVD FQG E+DIII+S VRSN IGF+++PRR+NVALT
Sbjct: 789 YQGSLHSRLYQE----IEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALT 844
Query: 814 RARHCLWILGNERTLTRNRSVWKALVDDAKARQ 846
RA+ + I+GN + L + + +W L++ K R+
Sbjct: 845 RAKFGIIIVGNPKVLAKQQ-LWNHLLNFYKDRK 876
Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRT-LVCTPTIVAIKELASRVVKLVKESVERDC 287
+ LI GPPGTGKT T + ++ L+++ T LVC P+ A+ +L ++ + V R C
Sbjct: 468 LSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLTEKIHR-TNLKVVRVC 526
Query: 288 ---RDALFFPLGEILLLGNNERLKVDSGVEEI 316
R+A+ P+ + L ++ +S ++++
Sbjct: 527 AKSREAIDSPVSFLALHNQIRNMETNSELKKL 558
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 163/307 (53%), Gaps = 21/307 (6%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
L +QYRMHP++S FP++ FYE + + T R + P F V
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 762
Query: 702 GGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLG 759
G+EE N E + V KI L K + IGI++PY Q + +
Sbjct: 763 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYL----- 814
Query: 760 SKYVNSAGF-------AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVAL 812
+Y+ +G V++ SVD FQG E+D II+S VR+N IGF+++PRR+NVAL
Sbjct: 815 VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 874
Query: 813 TRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADDDKDLGKSILEAKKELNELY 872
TRAR+ + I+GN + L++ + +W L++ K ++ + +L +S+++ K +L
Sbjct: 875 TRARYGVIIVGNPKALSK-QPLWNHLLNYYKEQKVLVEGPLN-NLRESLMQFSKP-RKLV 931
Query: 873 ELLNPGS 879
+NPG+
Sbjct: 932 NTINPGA 938
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 231 LIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRV 275
LI GPPGTGKT T + ++ L Q LVC P+ +A+ +L ++
Sbjct: 500 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 545
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 162/307 (52%), Gaps = 21/307 (6%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E E +P+ L G K +L GD CQL +V K + +A +SLFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
L +QYRMHP++S FP++ FYE + + T R + P F V
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 757
Query: 702 GGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLG 759
G+EE N E + V KI L K + IGI++PY Q + +
Sbjct: 758 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYL----- 809
Query: 760 SKYVNSAGF-------AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVAL 812
+Y+ +G V++ SVD FQG E+D II+S VR+N IGF+++PRR+NVAL
Sbjct: 810 VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL 869
Query: 813 TRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADDDKDLGKSILEAKKELNELY 872
TRAR+ + I+GN + L++ + +W L+ K ++ + +L +S+++ K +L
Sbjct: 870 TRARYGVIIVGNPKALSK-QPLWNHLLSYYKEQKALVEGPLN-NLRESLMQFSKP-RKLV 926
Query: 873 ELLNPGS 879
+NPG+
Sbjct: 927 NTVNPGA 933
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 231 LIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRV 275
LI GPPGTGKT T + ++ L Q LVC P+ +A+ +L ++
Sbjct: 495 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 540
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 185/366 (50%), Gaps = 26/366 (7%)
Query: 525 LRKLLSSFNELNLPSAVEKDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNFLVI 584
LRKL +F L+ L +++ L++A + +T + + ++I
Sbjct: 647 LRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDPRLSQFR-FPHILI 705
Query: 585 DEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVESKVSDEACFGRSLFERLSHLRH 643
DE+ Q E E IPL + G K +L GD QL P ++ KV D A +SLFERL L H
Sbjct: 706 DESTQASEPECLIPLMM-GAKQVILVGDHRQLGPVLLCKKVVD-AGLSQSLFERLISLGH 763
Query: 644 SKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFL-PGPMYGPYSFINVFG 702
L+IQYRMHPS++ FP++ YE ++ + R + +F P P P F N G
Sbjct: 764 HPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPK-DPMFFFNCTG 822
Query: 703 GRE------EFIEHSCRNMVEVSVVMKILLNLYK-GWINSKEKLSIGIVSPYIAQVAAIQ 755
E FI N E S+ KI+ + G + + IGI++PY Q A I
Sbjct: 823 SEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ----IGIITPYEGQRAYIT 873
Query: 756 EKL-GSKYVNSAGF-AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALT 813
+ S +N + +++V SVD FQG E+D II+S VRSN+ IGF+ +PRR+NVALT
Sbjct: 874 SHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNVALT 933
Query: 814 RARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNAD-DDKDLGKSILEAKKELNELY 872
RAR L ILGN + L+++ +W +L+ K + + IL+ K+L
Sbjct: 934 RARFGLIILGNAKVLSKD-PLWNSLISHFKNKNVLVEGSLANLKQSPVILQKPKKLYGQG 992
Query: 873 ELLNPG 878
+L PG
Sbjct: 993 KLPIPG 998
Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 227 ATVQLIWGPPGTGKTKTVSML---LVILLQMKFRTLVCTPTIVAIKELASRV 275
A + LI GPPGTGKT S + LV ++ + LVCTP+ VAI +L ++
Sbjct: 551 APLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKL 602
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 150/275 (54%), Gaps = 23/275 (8%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDEA Q E E IPL L G K VL GD QL +V +K A +SLFERL L
Sbjct: 561 VLIDEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIIL 619
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
+S L +QYRMHP +S FP++ FYE + + T +R R + P P S + +
Sbjct: 620 GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERI--ARHVDFPWIQPDSPLMFY 677
Query: 702 G--GREEFIEH--SCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEK 757
G+EE S N E S KI+ + + ++ IGIV+PY Q + I
Sbjct: 678 ANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIVTPYDGQRSYI--- 731
Query: 758 LGSKYVNSAGF-------AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNV 810
+Y+ + G AV+V SVD FQG E+D II+S VRS+ IGF+++PRR+NV
Sbjct: 732 --VQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNV 789
Query: 811 ALTRARHCLWILGNERTLTRNRSVWKALVDDAKAR 845
ALTRA++ + +LGN + L ++ ++W V K +
Sbjct: 790 ALTRAKYGVIVLGNPKVLAKH-ALWYHFVLHCKEK 823
Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFR-------TLVCTPTIVAIKELAS-------R 274
+ LI GPPGTGKT T + ++ L M+ R LVC P+ VA+ +LA R
Sbjct: 409 LSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLR 468
Query: 275 VVKLVKESVE 284
VV++ +S E
Sbjct: 469 VVRVAAKSRE 478
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 147/279 (52%), Gaps = 19/279 (6%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E E + + + G++ VL GD CQL +V K + A +SLFERL L
Sbjct: 607 VLIDESTQATEPEILVSI-MRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
L +QYRMHP +S FP++ FY+ + + T R P +F
Sbjct: 666 GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKPAFFWHC 725
Query: 702 GGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAI----- 754
G EE N E + V K++ L K + + IG+++ Y Q + I
Sbjct: 726 SGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNYMH 782
Query: 755 -QEKLGSK-YVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVAL 812
Q L SK Y N V++ SVD FQG E+D II++ VRSN+ IGF+S+PRR+NVA+
Sbjct: 783 TQGTLNSKLYEN-----VEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAI 837
Query: 813 TRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNA 851
TRA++ L ++GN + L R+ +W L++ K+++ +
Sbjct: 838 TRAKYGLVLVGNAKVLARH-DLWHELINHYKSKEMLYEG 875
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Query: 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTIVAIKELA 272
++ +K++L + LI GPPGTGKT + ++ L+Q + LVC+P+ +A+ LA
Sbjct: 451 MQAVKQVLTR----PLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLA 506
Query: 273 S-------RVVKLVKESVERDCRDALFFPLGEIL-LLGNNE-----RLKVDSGVEEIYLD 319
+VV+L S E + L L ++G E +LK ++G E D
Sbjct: 507 EKIHKTGLKVVRLCARSREHSETTVPYLTLQHQLKVMGGAELQKLIQLKDEAGELEFKDD 566
Query: 320 YRVKRL 325
R +L
Sbjct: 567 LRYMQL 572
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 161/299 (53%), Gaps = 11/299 (3%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL 641
++IDE+ Q E + P++L G K +L G+ + V K + +A +SLFERL L
Sbjct: 615 ILIDESTQATEPKCIGPVEL-GAKQLIL-GEITASWSCVMCKKAAKAGLSQSLFERLVVL 672
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVF 701
L +QYRMHP++S FP++ FYE + + T R + P F V
Sbjct: 673 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVT 732
Query: 702 GGREEFIEHSCR--NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLG 759
G+EE N E + V KI L K + IGI++PY Q + + + +
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 789
Query: 760 -SKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHC 818
S +++ + V++ SVD FQG E+D II+S VR+N IGF+++PRR+NVALTRA++
Sbjct: 790 FSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYG 849
Query: 819 LWILGNERTLTRNRSVWKALVDDAKARQCFFNADDDKDLGKSILEAKKELNELYELLNP 877
+ I+GN + L++ + +W L+++ K ++ + +L +S+++ K +L +NP
Sbjct: 850 VIIVGNPKALSK-QPLWNNLLNNYKEQKVLVEGPLN-NLRESLMQFSKP-RKLVNTINP 905
Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVIL-LQMKFRTLVCTPTIVAIKELASRVVK 277
+ LI GPPGTGKT T + ++ L Q LVC P+ +A+ +L ++ K
Sbjct: 469 LSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDK 518
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 167/341 (48%), Gaps = 25/341 (7%)
Query: 578 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFER 637
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 638 LSHL-----------RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRF 686
L R L+IQYRMHP I FP++Y Y + + E +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSEW 2268
Query: 687 LPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSP 746
+ PY +V G E S N+ E+ +VM+I+ L K +IGI++
Sbjct: 2269 ----PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGIITH 2323
Query: 747 YIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNN-GGSIGFISNP 805
Y AQ IQ+ L ++ + G A +V +VD FQG ++D II++ VR++ GSIGF+++
Sbjct: 2324 YKAQKTMIQKDLEKEF-DKKGPA-EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASL 2381
Query: 806 RRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADDD--KDLGKSILE 863
+R+NV +TRA++ L+ILG+ RTL N+ W L+ DA+ R D + IL+
Sbjct: 2382 QRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTSDPNYRHDAMKILK 2440
Query: 864 AKKELNELYELLNPGSTLFRSQRWKVNFSDNFLKSFRKLTS 904
K L L +P +T + R + N L S TS
Sbjct: 2441 LKPVLQR--SLTHPPATAPEAPRPQGGLPSNRLDSGLATTS 2479
Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
Query: 223 TDSGATVQLIWGPPGTGKTKTVSMLLVILLQ----------------MKFRTLVCTPTIV 266
+ S A + LI GPPGTGK+KT+ LL LL + R LVC P+
Sbjct: 1928 SPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNA 1987
Query: 267 AIKELASRVVKLVKESVERDCRDALFFPLG 296
A+ EL +++ KE C+D PLG
Sbjct: 1988 AVDELMKKIILEFKEK----CKDKK-NPLG 2012
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 152/288 (52%), Gaps = 21/288 (7%)
Query: 578 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFER 637
P + +++DEA Q E E+ PL + +L GD QLP V S + E + +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 638 LSHL--RHSKH---------LLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRF 686
L + +H L++QYRMHP I FP++Y Y + +++ R
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLK----TNRQTEAIRC 2288
Query: 687 LPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSP 746
+ PY +V G E S N+ E+ +VM+I+ L K +IGI++
Sbjct: 2289 SSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGIITH 2347
Query: 747 YIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNN-GGSIGFISNP 805
Y AQ IQ+ L ++ + G A +V +VD FQG ++D +I++ VR+N+ GSIGF+++
Sbjct: 2348 YKAQKTMIQKDLDKEF-DRKGPA-EVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASL 2405
Query: 806 RRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADD 853
+R+NV +TRA++ L+ILG+ RTL N+ W L+ DA+ R D
Sbjct: 2406 QRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKRGAIIKTCD 2452
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 24/119 (20%)
Query: 223 TDSGATVQLIWGPPGTGKTKTVSMLLVILLQ----------------MKFRTLVCTPTIV 266
+ S A + LI GPPGTGK+KT+ LL LL + R LVC P+
Sbjct: 1952 SPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNA 2011
Query: 267 AIKELASRVVKLVKESVERDCRDALFFPL---GEILLLGNNERLKVDSGVEEIYLDYRV 322
A+ EL +++ KE C+D PL G+I L+ ++S V + LD +V
Sbjct: 2012 AVDELMKKIILEFKEK----CKDKK-NPLGNCGDINLVRLGPEKSINSEVLKFSLDSQV 2065
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 141/267 (52%), Gaps = 14/267 (5%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVE-SKVSDEACFGRSLFERLSH 640
+V+DE +Q+ E S +P+ + +L GD QLP ++ S + E ++LF+RL
Sbjct: 628 VVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCL 687
Query: 641 LRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINV 700
+ H LL QYR HP+IS N FY+ + + T +RS +LP F NV
Sbjct: 688 MGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT-----LCFYNV 742
Query: 701 FGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGS 760
G + ++S N+ E + +K++ +L I IG+++ Y +Q+ + L +
Sbjct: 743 KGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGS---MIGVITLYKSQMYKLCHLLSA 799
Query: 761 KYVNSAGF-AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCL 819
+ V+V +VD FQG E++III+S VR+ +GFI + +R+NVALTR + L
Sbjct: 800 VDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGKRHL 856
Query: 820 WILGNERTLTRNRSVWKALVDDAKARQ 846
I+GN L +N+ +W ++ + R+
Sbjct: 857 LIVGNLACLRKNQ-LWGRVIQHCEGRE 882
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 161/343 (46%), Gaps = 65/343 (18%)
Query: 555 LKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDEC 614
+ ++ + F+T ++ +K +++DEA Q E+ + +PL L GI++ V GDE
Sbjct: 790 VSQSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEK 849
Query: 615 QLPAMVESKVSDEACFGRSLFER-LSHLRHSKHL-LSIQYRMHPSISFFPNSYFYENKIH 672
QL S S+ SLFER LS+ + L L QYRMHP IS FP Y ++
Sbjct: 850 QL-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELK 904
Query: 673 DSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMV-----------EVSVV 721
D T E++++ PG + P F G E + + R++V E+ +
Sbjct: 905 DGVTDEQKAW-----PGVQH-PLFFYQCDLGPESRVRSTQRDIVGFTYENKHECVEIVKI 958
Query: 722 MKILLNLYKGWINSKEKLS-IGIVSPYIAQVAAIQEKLGSKYV----------------- 763
++IL+ ++ K L IG+++PY AQ + + L V
Sbjct: 959 IQILM------LDKKVPLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIEL 1012
Query: 764 -NSAGF----------------AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPR 806
N+AG + V +VD FQG E+ II S VR+N IGF+ + R
Sbjct: 1013 FNAAGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKR 1072
Query: 807 RVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFF 849
R+NVALTRA+H L ++GN+ L + +WK + + ++ F
Sbjct: 1073 RLNVALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQEVIF 1115
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 142/281 (50%), Gaps = 42/281 (14%)
Query: 571 LHSVAMKPL-----NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVS 625
LH + L + ++IDEA+Q E + IPL G+ +L GD QL V+SK
Sbjct: 370 LHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLL--GMNKVILAGDHMQLSPNVQSKRP 427
Query: 626 DEACFGRSLFERL--SHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKR--- 680
S+FERL S K L+IQYRMH IS FP+ FY++K+ + V+KR
Sbjct: 428 -----YISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLM 482
Query: 681 ----SYEKRFLPGPMYGPYSFINVFGGREE---------FIEHSCRNMVEVSVVMKILLN 727
E P+Y F + G +E F + S N E +V +
Sbjct: 483 DLENVEETELTDSPIY----FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISG 538
Query: 728 LYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIII 787
L + + +K+ I +V+PY AQVA I++ L K G V++ SVD QG E++ II
Sbjct: 539 LLEAGLEAKD---IAVVTPYNAQVALIRQLLKEK-----GIEVEMGSVDKVQGREKEAII 590
Query: 788 ISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTL 828
S VRSN+ +GF++ RR+NVA+TR + L ++G+ T+
Sbjct: 591 FSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRV 275
+ LI GPPGTGKT T+ ++ L+ R LVC + +A+ + R+
Sbjct: 227 LSLIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRL 273
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 148/287 (51%), Gaps = 24/287 (8%)
Query: 565 ASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKV 624
ASS L + + +V+DE AQ E+ IPL L K +L GD QLP S
Sbjct: 354 ASSDGPLKLLPENHFDVVVVDECAQALEASCWIPL-LKAPK-CILAGDHRQLPPTTISHK 411
Query: 625 SDEACFGRSLFERL--SHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSY 682
+ A RSL ERL H + +L++QYRMH +I+ + + Y ++ P+V +
Sbjct: 412 AALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVA--GH 469
Query: 683 EKRFLPG-----PMYGPYSFINVFG-GREEFIEHSCR---NMVEVSVVMKILLNLYKGWI 733
+ LPG P I+ G G E E + N EV +V + L +
Sbjct: 470 LLKDLPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGV 529
Query: 734 NSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRS 793
++ + I +++PY QV +++ L +K+ +++ SVDGFQG E++ +I++ VRS
Sbjct: 530 HAGD---IAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRS 581
Query: 794 NNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVD 840
N G +GF++ RR+NVA+TRAR + ++ + RT+ N + K LVD
Sbjct: 582 NRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVN-NHAFLKTLVD 627
Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276
V +I GPPGTGKT TV +++ ++ + L C P+ VA+ L R+
Sbjct: 208 VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLA 255
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 145/289 (50%), Gaps = 28/289 (9%)
Query: 580 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS 639
+ +V+DE AQ E+ IPL L K +L GD QLP S + A RSL ERL+
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPK-CILAGDHKQLPPTTVSHKAALAGLSRSLMERLA 426
Query: 640 --HLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPG-----PMY 692
H +L++QYRMH +I+ + + Y ++ P+V + + LPG
Sbjct: 427 EKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVA--GHLLKDLPGVADTEETS 484
Query: 693 GPYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYI 748
P I+ G EE S N EV +V + L + + + I +++PY
Sbjct: 485 VPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGD---IAVIAPYN 541
Query: 749 AQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRV 808
QV +++ L +K+ +++ SVDGFQG E++ +I++ VRSN G +GF++ RR+
Sbjct: 542 LQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRI 596
Query: 809 NVALTRARHCLWILGNERTLTRNRSVWKALVD----DAKARQCFFNADD 853
NVA+TRAR + ++ + T+ N + K LVD + R F DD
Sbjct: 597 NVAVTRARRHVAVICDSHTVN-NHAFLKTLVDYFTEHGEVRTAFEYLDD 644
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVER 285
V +I GPPGTGKT TV +++ ++ + L C P+ +A+ L R+ L K+ + R
Sbjct: 208 VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA-LCKKQILR 263
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 40/306 (13%)
Query: 554 CLKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFG 611
L A + +T S M S +K F +VIDE +Q E IP+ + G + ++ G
Sbjct: 371 ILAEADVIVATNS---MAGSEILKGWEFDVIVIDEGSQAMEPSCLIPI-VKG-RKLIMAG 425
Query: 612 DECQLPAMVESKVSDEACFGRSLFERL-SHLRHSKHLLSIQYRMHPSISFFPNSYFYENK 670
D QLP V +S+ ++LFERL +L IQYRM+ I FPN FY NK
Sbjct: 426 DHKQLPPTV---LSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYNNK 482
Query: 671 IHDSPTV-----------EKRSYEKRFLPGPMYGPYSFINVFG-GREEFIEHSCRNMVEV 718
+ +V E+ R + + P FINV G R++ S N+ E
Sbjct: 483 LKADESVKNITLLDLVKEEEIDEVDRDIINEI--PVQFINVEGIERKDKESPSYYNIEEA 540
Query: 719 SVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGF 778
V++I+ L K K+ +++PY AQV ++ + ++V +VDGF
Sbjct: 541 EKVLEIVKKLVKY------KIPTNVITPYDAQVRYLR-----RLFEEHNIDIEVNTVDGF 589
Query: 779 QGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKAL 838
QG E + I+IS VR+ N GF+ + RR+NVA+TRA+ L ++GNE L +++ V+ +
Sbjct: 590 QGRENEAIVISFVRTKN---FGFLKDLRRLNVAITRAKRKLILIGNENLLKQDK-VYNEM 645
Query: 839 VDDAKA 844
+ AK+
Sbjct: 646 IKWAKS 651
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 28/289 (9%)
Query: 580 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS 639
+ +V+DE AQ E+ IPL L K +L GD QLP S + A RSL ERL+
Sbjct: 369 DVVVVDECAQALEASCWIPL-LKAPK-CILAGDHRQLPPTTVSHRAALAGLSRSLMERLA 426
Query: 640 --HLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPG-----PMY 692
H +L++QYRMH +I + + Y + P+V + + LPG
Sbjct: 427 EKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVA--GHLLKDLPGVTDTEETR 484
Query: 693 GPYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYI 748
P I+ G EE S N EV +V + L + + + I +++PY
Sbjct: 485 VPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGD---IAVIAPYN 541
Query: 749 AQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRV 808
QV +++ L +K+ +++ SVDGFQG E++ ++++ VRSN G +GF++ RR+
Sbjct: 542 LQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRI 596
Query: 809 NVALTRARHCLWILGNERTLTRNRSVWKALVD----DAKARQCFFNADD 853
NVA+TRAR + ++ + T+ N + + LVD + R F DD
Sbjct: 597 NVAVTRARRHVAVICDSHTVN-NHAFLETLVDYFTEHGEVRTAFEYLDD 644
Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276
+I GPPGTGKT TV +++ ++ + L C P+ +A+ L R+
Sbjct: 210 IIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA 255
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 158/332 (47%), Gaps = 53/332 (15%)
Query: 551 KRFCLKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPL-QLSGIKHA 607
++F L R + T S + S ++K L+ +++DEA E E+ IPL Q +
Sbjct: 2327 RKFELDRHEVILCTCSCAA---SASLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKV 2383
Query: 608 VLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFY 667
VL GD QL +V+++ RSLFER H+L QYRMH I FP+ FY
Sbjct: 2384 VLLGDHKQLRPVVKNERLQNLGLDRSLFERY---HEDAHMLDTQYRMHEGICAFPSVAFY 2440
Query: 668 ENKIHDSPTVEKRSYEKRFLPGPMYG-------PYSFINVFGGREEFI-------EHSCR 713
++K+ ++++ P + G P F +V G + E+S
Sbjct: 2441 KSKL--------KTWQGLRRPPSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSKA 2492
Query: 714 NMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFA-VKV 772
N+ EV+ V++I L G + E I +++PY AQ + I SK + G A V V
Sbjct: 2493 NLEEVAEVVRITKQLTLG--RTVEPQDIAVLTPYNAQASEI-----SKALRREGIAGVAV 2545
Query: 773 MSVDGFQGGEEDIIIISTVRSNNGGS-------------IGFISNPRRVNVALTRARHCL 819
S+ QG E +++STVR+ +GF+ +P +VNVA+TRA+ L
Sbjct: 2546 SSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGL 2605
Query: 820 WILGNERTLTRNRSVWKALVDDAKARQCFFNA 851
++G+ L R +W++L+D +A+Q A
Sbjct: 2606 CLIGDH-LLLRCCPLWRSLLDFCEAQQTLVPA 2636
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 138/296 (46%), Gaps = 37/296 (12%)
Query: 555 LKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQ-LSGIKHAVLFGDE 613
L R + +T S + L V + + ++IDEAAQ+ E E+ PL S VL GD
Sbjct: 638 LARHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696
Query: 614 CQLP----AMVESKVSDEACFGRSL--FERLSH--LRHSKHLLSIQYRMHPSISFFPNSY 665
Q+ ++ ++ ++ R +++ +H R S+ + YR +I F + +
Sbjct: 697 MQVTPRLFSVARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRH 756
Query: 666 FY---ENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIE-HSCRNMVEVSVV 721
FY N IH + P P + P F +V G + + S N+ E++ V
Sbjct: 757 FYVAKGNPIH---------ARGKVPPHPRHYPLMFCHVAGSPDRDMSMASWLNLAEIAQV 807
Query: 722 MKILLNLYKGWIN---SKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGF 778
++ + Y W + +E+ I +VS + AQV+A++++L + + V V S +
Sbjct: 808 VEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRRDLGQ----VSVGSFEIL 862
Query: 779 QGGEEDIIIISTVRSNNG----GSIG--FISNPRRVNVALTRARHCLWILGNERTL 828
G + ++++STV + G++ F ++ R +N LTRA+ L ++G+ L
Sbjct: 863 PGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVAL 918
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 145/289 (50%), Gaps = 28/289 (9%)
Query: 580 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS 639
+ +VIDE AQ E+ IPL + + +L GD QLP S + A SL ERL+
Sbjct: 370 DVVVIDECAQALEASCWIPLLKA--RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLA 427
Query: 640 HLRHSK--HLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYG---- 693
++ L++QYRMH +I + + Y ++ +V + + R LPG
Sbjct: 428 EEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAR--HLLRDLPGVAATEETG 485
Query: 694 -PYSFINVFGGR----EEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYI 748
P ++ G EE E S N EV +V + L + +++ I +VSPY
Sbjct: 486 VPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARD---IAVVSPYN 542
Query: 749 AQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRV 808
QV +++ L ++ +++ SVDGFQG E++ +I+S VRSN G +GF++ RR+
Sbjct: 543 LQVDLLRQSLVHRHPE-----LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRI 597
Query: 809 NVALTRARHCLWILGNERTLTRNRSVWKALVD----DAKARQCFFNADD 853
NVA+TRAR + ++ + RT+ N + K LV+ + R F DD
Sbjct: 598 NVAVTRARRHVAVICDSRTVN-NHAFLKTLVEYFTQHGEVRTAFEYLDD 645
Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVER 285
+I GPPGTGKT TV +++ ++ + L C P+ +A+ L R+ L K+ + R
Sbjct: 211 IIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA-LCKQRILR 264
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 151/313 (48%), Gaps = 31/313 (9%)
Query: 554 CLKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQLSGIKHAV--L 609
L R L ST S+ +L++ + +F +++DEA Q E E+ I + + V L
Sbjct: 512 ALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVL 571
Query: 610 FGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKH-------LLSIQYRMHPSISFFP 662
GD QL ++ S+ ++ G+S ERL + L YR HP I P
Sbjct: 572 AGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLP 631
Query: 663 NSYFYENK-IHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSV 720
+ FY+ + + + FLP + P F + G E E S N +E+S
Sbjct: 632 SKLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQGCDEREGNNPSWFNRIEISK 690
Query: 721 VMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQG 780
V++ + L + ++ IG+++PY QV I+E L + VKV SV+ FQG
Sbjct: 691 VIETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVLDRLDMTE----VKVGSVEQFQG 744
Query: 781 GEEDIIIISTVRS-------NNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTR--- 830
E+ +IIISTVRS + +GF+SNPRR NVA+TRA L I+GN + +
Sbjct: 745 QEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMN 804
Query: 831 -NRSVWKALVDDA 842
N+ +W+ + ++A
Sbjct: 805 WNKLLWRCVDNNA 817
Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 219 ELLCTDSGATVQLIWGPPGTGKTKTVSMLLVIL--LQMKFRTLVCTPTIVAIKELASRVV 276
E++ GA +I GPPGTGKT T+ +V L Q R LVC P+ A + +++
Sbjct: 406 EMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLL 465
Query: 277 KL 278
L
Sbjct: 466 CL 467
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 139/292 (47%), Gaps = 32/292 (10%)
Query: 565 ASSSYMLHSVAMKPLNF-----LVIDEAAQLKESESTIPL--QLSGIKHAVLFGDECQLP 617
SSS L S+ NF L+IDE +Q E + IPL + VL GD QLP
Sbjct: 370 GSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLP 429
Query: 618 AMVESKVSDEACFG--RSLFERLSHL---RHSKHLLSIQYRMHPSISFFPNSYFYENKIH 672
++++ +LF+R+ + R L++QYRM+ I FP+ Y K+
Sbjct: 430 PTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLL 489
Query: 673 -----------DSPTVEKRSYEK---RFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEV 718
D PTV+ E +P Y E I S N E+
Sbjct: 490 ADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEI 549
Query: 719 SVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGF 778
++V + + NL N E SIG++SPY AQV+ +++ + + +++ +VDGF
Sbjct: 550 AIVKEHIENLRS--FNVPEN-SIGVISPYNAQVSHLKKLIHDEL---KLTDIEISTVDGF 603
Query: 779 QGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTR 830
QG E+D+II+S VRSN +GF+ RR+NVA+TR R L ++GN L R
Sbjct: 604 QGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQR 655
Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 231 LIWGPPGTGKTKTVSMLLVILL--QMKFRTLVCTPTIVAIKELASRVVKLVKESV 283
+I GPPGTGKT T+ L+ LL + R L+C P+ +++ + R+ LV ++
Sbjct: 226 IIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNL 280
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 33/275 (12%)
Query: 580 NFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS 639
+F ++DEA+Q+ + PL + VL GD QLP +V+S + E SLF+RL
Sbjct: 758 DFCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLE 815
Query: 640 HLRHSKHLLSIQYRMHPSISFFPNSYFYE-----------NKIHDSPTVE--------KR 680
+ + L++QYRM+ I N YE N + P ++ +
Sbjct: 816 RNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRE 875
Query: 681 SYEKRFLPGPM--YGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEK 738
S E ++ + P F+N + +E + + + K++ +L K ++ + +
Sbjct: 876 SQESMWIKDVLEPSNPVCFLNT--EKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCR 933
Query: 739 LS-IGIVSPYIAQVAAIQEKLGSKYVNS-AGFAVKVMSVDGFQGGEEDIIIISTVRSNNG 796
S IGI++PY Q+ I S Y NS + AV+V +VD +QG ++ +II+S VRSN
Sbjct: 934 PSDIGIIAPYRQQLKMI-----SNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNID 988
Query: 797 GSIG-FISNPRRVNVALTRARHCLWILGNERTLTR 830
G +G + + RR+NVALTRA+H L +LG TL R
Sbjct: 989 GKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNR 1023
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 36/288 (12%)
Query: 577 KPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFE 636
K +F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+
Sbjct: 754 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 637 RLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIH-----------DSPTVEKRSYEKR 685
RL +++ L++QYRM+ I N YE K+ + P + E
Sbjct: 812 RLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELE 871
Query: 686 FLPGPMYGPY-----------SFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKGW 732
F P+ F+N E+ + N++E K+++ L +
Sbjct: 872 FYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEA----KLVVFLTSVF 927
Query: 733 INSKEKLS-IGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTV 791
I + K S IGI++PY Q+ I + L V V+V +VD +QG ++ I+++S V
Sbjct: 928 IKAGCKPSDIGIIAPYRQQLKVISDLLAQSSVG----MVEVNTVDRYQGRDKSIVVVSFV 983
Query: 792 RSNNGGSIG-FISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKAL 838
RSN G++G + + RR+NVA+TRA+H L +LG +L+R + K L
Sbjct: 984 RSNEDGTLGELLKDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLL 1031
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 33/297 (11%)
Query: 577 KPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFE 636
K +F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+
Sbjct: 754 KTFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFK 811
Query: 637 RLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDS-----------PTVEKRSYE-- 683
RL + L+IQYRM+ I N YE K+ P ++ E
Sbjct: 812 RLERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFY 871
Query: 684 -----KRFLPGPMY--GPYSFINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKGWIN 734
+L G P F+N E+ N+ E +++ + K +
Sbjct: 872 ADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCS 931
Query: 735 SKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSN 794
+ IGI++PY Q+ I + L V V+V +VD +QG ++ +I++S VRSN
Sbjct: 932 PSD---IGIIAPYRQQLRTITDLLARSSVG----MVEVNTVDKYQGRDKSLILVSFVRSN 984
Query: 795 NGGSIG-FISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFN 850
G++G + + RR+NVA+TRA+H L +LG+ +L R + K L D A Q N
Sbjct: 985 EDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEK-LFDHLNAEQLISN 1040
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 139/289 (48%), Gaps = 40/289 (13%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHA-----VLFGDECQLPAMVESKVSDEACFGRSLFE 636
+ +DEA E E I + ++G+ +A VL GD QL ++ S + + G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 637 RLSHL-------------RHSKHLLSIQYRMHPSISFFPNSYFYENKIHD-SPTVEKRSY 682
RL R+ LL YR HPSI PN FY+N++ + + R Y
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQ-NYRSHPSILKVPNELFYDNELKACADEISSRQY 785
Query: 683 EK-RFLPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVM----KILLNLYKGWINSK 736
LP + P F V G E E S N E+ +M K+LL K I
Sbjct: 786 CTWEHLPKRGF-PVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKI 844
Query: 737 EKLSIGIVSPYIAQVAAIQE--KLGSKYVNSAGFA-VKVMSVDGFQGGEEDIIIISTVRS 793
IGI++PY QV I++ K+ + + +G +KV SV+ FQG E +II+STVRS
Sbjct: 845 SPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRS 904
Query: 794 -------NNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVW 835
++ +IGF+ N +R NVA+TRA+ L ++GN L R +W
Sbjct: 905 SKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIIL-RTDEIW 952
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 131/272 (48%), Gaps = 35/272 (12%)
Query: 577 KPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFE 636
K +F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+
Sbjct: 754 KIFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 637 RLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIH------DSPTVEKRSYEKRFLPGP 690
RL + + L++QYRM+ I N YE K+ + + R ++ L
Sbjct: 812 RLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELE 871
Query: 691 MYGPYS----------------FINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKGW 732
Y YS F+N E+ + N+ E +++ + K
Sbjct: 872 FYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAG 931
Query: 733 INSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVR 792
+ + IGI++PY Q+ I + L S G V+V +VD +QG ++ I+++S VR
Sbjct: 932 CSPSD---IGIIAPYRQQLKIINDLLA----RSIGM-VEVNTVDKYQGRDKSIVLVSFVR 983
Query: 793 SNNGGSIG-FISNPRRVNVALTRARHCLWILG 823
SN G++G + + RR+NVA+TRA+H L +LG
Sbjct: 984 SNKDGTVGELLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 151/337 (44%), Gaps = 57/337 (16%)
Query: 582 LVIDEAAQLKESESTIPLQLSGIKHA--VLFGDECQLPAMVESKVSDEACFGRSLFERLS 639
++ DEA Q E E+ +P+ + K + VL GD QL ++V S+++ + F S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL- 1003
Query: 640 HLRHSKHLLSIQ-------------------YRMHPSISFFPNSYFYENKIHDSPTV-EK 679
L S + +Q YR PSI + FY++++ P + EK
Sbjct: 1004 -LERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDEL--IPVLSEK 1060
Query: 680 RSYEKRFLPG-----------PMYGPYSFINVFG-GREEFIEHSCRNMVEVSVVMKILLN 727
S E R L P F + G R+ S N EV V + +
Sbjct: 1061 DSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIA 1120
Query: 728 LYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIII 787
LY+ + + + IGI++PY QV ++ S ++ + K+ SV+ FQG E DII+
Sbjct: 1121 LYRANVTADQ---IGIITPYQKQVKMLR----SMFIGTDVVMPKIGSVEEFQGQERDIIL 1173
Query: 788 ISTVRSNNG-------GSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVD 840
ISTVRS+ S+GF+ +R+NVA++RAR + I GN L + W+ L+
Sbjct: 1174 ISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVD-ECWRQLIL 1232
Query: 841 DAKARQCFFNADDDKDLGKSILEAKKELNELYELLNP 877
+F DL + ++ K E+ E P
Sbjct: 1233 FCVKNNAYFGC----DLPQMVINQKDEVPVCLETFVP 1265
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 146/329 (44%), Gaps = 42/329 (12%)
Query: 582 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSDEACFGRS 633
+ IDEA E ES + + L +K VL GD QL ++ S ++ + G S
Sbjct: 642 IFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYS 701
Query: 634 LFERL----SHLRHSKHLLSIQ--------YRMHPSISFFPNSYFYENKIHDSPTVEKRS 681
L ERL S + Q YR HP+I PN +YE ++ V R
Sbjct: 702 LLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRE 761
Query: 682 YEKRFLPGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKIL-LNLYKGWINSKEK 738
R+ P G P F V G E E S N E + V L L L K +
Sbjct: 762 RFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKAR 821
Query: 739 LS---IGIVSPYIAQVAAIQEKLGSKYVNSAGFA----VKVMSVDGFQGGEEDIIIISTV 791
LS +G++SPY QV I+ + G +KV SV+ FQG E +I+ISTV
Sbjct: 822 LSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 881
Query: 792 RSNNGG-------SIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKA 844
RS+ ++GF+ NP+R NVA+TRA+ L I+GN L + WK ++ K
Sbjct: 882 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPD-WKVFLEFCKE 940
Query: 845 R----QCFFNADDDKDLGKSILEAKKELN 869
C F A D G+++L+ +L+
Sbjct: 941 NGGYTGCPFPAKLDLQQGQNLLQGLSKLS 969
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 24/265 (9%)
Query: 577 KPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFE 636
K +F ++DEA+Q+ + PL S K VL GD QLP +V++ + + SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 637 RLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYS 696
RL +++ L++QYRM+ I N YE K+ EK S LP
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGS--EKVSNATANLP-------- 830
Query: 697 FINVFGGREEFIEHSCRNMVEVSVVMKIL--LNLYKGWINSKEKLSIGIVSPYIAQVAAI 754
N+ + EF + S + EV K + LN K + IGI+SPY Q+ I
Sbjct: 831 --NLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPSD---IGIISPYRHQLKVI 885
Query: 755 QEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIG-FISNPRRVNVALT 813
+ + N V+V ++D +QG ++ III+S VR++N ++G + + RR+NVA+T
Sbjct: 886 TDLMARLKENR----VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAIT 941
Query: 814 RARHCLWILGNERTLTRNRSVWKAL 838
RA+H L ++G +L R + K L
Sbjct: 942 RAKHKLIMVGCVPSLRRYPPLEKLL 966
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 131/279 (46%), Gaps = 34/279 (12%)
Query: 577 KPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFE 636
K +F ++DEA+Q+ + PL S + VL GD QLP +V ++ + SLF+
Sbjct: 755 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFK 812
Query: 637 RLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIH------DSPTVEKRSYEKRFLPGP 690
RL + L++QYRM+ I N Y K+ + + + + L
Sbjct: 813 RLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQ 872
Query: 691 MYGPYS----------------FINV--FGGREEFIEHSCRNMVEVSVVMKILLNLYKGW 732
+Y YS F+N E+ N+ E +++ + K
Sbjct: 873 LYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAG 932
Query: 733 INSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVR 792
+ + IG+++PY Q+ I + L V V+V +VD +QG ++ +I++S VR
Sbjct: 933 CSPSD---IGVIAPYRQQLRIISDLLARSSVG----MVEVNTVDKYQGRDKSLILVSFVR 985
Query: 793 SNNGGSIG-FISNPRRVNVALTRARHCLWILGNERTLTR 830
SN G++G + + RR+NVALTRA+H L +LG+ +L R
Sbjct: 986 SNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKR 1024
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 149/329 (45%), Gaps = 47/329 (14%)
Query: 543 KDLLEDLLKRFC--------LKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKE 592
++++ D +K +C R + +T SSS + + + ++ +F + +DEA Q E
Sbjct: 834 EEIVIDAVKPYCRDGEDIWKASRFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASE 893
Query: 593 SESTIPLQL----SGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERL----SHLR-- 642
E IPL L SG VL GD QL +++S+++ S ERL ++ R
Sbjct: 894 PECLIPLGLMSDISG--QIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDE 951
Query: 643 --------HSKHLLSI---QYRMHPSISFFPNSYFY--ENKIHDSPTVEKRSYEKRFLPG 689
H+ L++ YR H ++ P+ FY E ++ PTV LP
Sbjct: 952 NAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPK 1011
Query: 690 PMYGPYSFINVFGGR-EEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYI 748
+ P F V G E S N E V++ L + IG+++PY
Sbjct: 1012 KGF-PLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYR 1070
Query: 749 AQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGS------IGFI 802
QV EK+ N +KV SV+ FQG E +IIISTVRSN +GF+
Sbjct: 1071 KQV----EKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFL 1126
Query: 803 SNPRRVNVALTRARHCLWILGNERTLTRN 831
SN +R NVA+TR + L +LGN L R+
Sbjct: 1127 SNSKRFNVAITRPKALLIVLGNPHVLVRD 1155
Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 217 IKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF-----RTLVCTPT 264
+K +L D +++GPPGTGKT T+ + +LQ+ F R LVC P+
Sbjct: 753 VKRILSGDCRPLPYILFGPPGTGKTVTI---IEAVLQVHFALPDSRILVCAPS 802
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 145/329 (44%), Gaps = 42/329 (12%)
Query: 582 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSDEACFGRS 633
+ IDEA E ES + + L +K VL GD QL ++ S ++ + G S
Sbjct: 643 IFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYS 702
Query: 634 LFERL----SHLRHSKHLLSIQ--------YRMHPSISFFPNSYFYENKIHDSPTVEKRS 681
L ERL S + + Q YR HP+I PN +Y+ ++ V R
Sbjct: 703 LLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRE 762
Query: 682 YEKRFLPGPMYG-PYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLY-KGWINSKEK 738
R+ P G P F V G E E S N E + V L L K +
Sbjct: 763 RFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKAR 822
Query: 739 LS---IGIVSPYIAQVAAIQEKLGSKYVNSAGFA----VKVMSVDGFQGGEEDIIIISTV 791
LS +G++SPY QV I+ + G +KV SV+ FQG E +I+ISTV
Sbjct: 823 LSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTV 882
Query: 792 RSNNGG-------SIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKA 844
RS+ ++GF+ NP+R NVA+TRA+ L ++GN L + WK ++ K
Sbjct: 883 RSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKTFLEFCKE 941
Query: 845 R----QCFFNADDDKDLGKSILEAKKELN 869
C F A D G+ +L+ +L+
Sbjct: 942 NGGYTGCPFPAKLDLQQGQDLLQGLSKLS 970
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 21/258 (8%)
Query: 584 IDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKV--SDEACFGRSLFERLSHL 641
I+EAA + E IP ++ VL GD QL + D S+FERL
Sbjct: 710 IEEAADVLEG-PIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVEN 768
Query: 642 RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDS----PTVEKRSYEKRFLPGPMYGPYSF 697
L++Q RMHP I +S + + ++ P++ +RF + +S
Sbjct: 769 DMEYTRLTMQRRMHPQIRRLVSSVYEDLSDYEITKYWPSIPGMGEIRRF-----FLTHSR 823
Query: 698 INVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEK 757
I G I N+ E ++++ + L N E I ++ Y AQ I E+
Sbjct: 824 IEDNDGFASKI-----NLFEAQMLVQFAVYLIN---NGVEPQKITCLTFYAAQKDLI-ER 874
Query: 758 LGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARH 817
L S+ +N +KV +VDG+QG E D++++S VR+N+ +GF+S+P RV V+L+RAR
Sbjct: 875 LLSESLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARR 934
Query: 818 CLWILGNERTLTRNRSVW 835
L+I GN + + + +W
Sbjct: 935 GLFIFGNAQLVAESNPLW 952
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 145/322 (45%), Gaps = 43/322 (13%)
Query: 548 DLLKRFC-----LKRASLF---FSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTI 597
D +K +C + RAS F +T SS+ + + + ++ F + +DEA Q E E I
Sbjct: 841 DAIKPYCRDGEDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLI 900
Query: 598 PLQL-SGIK-HAVLFGDECQLPAMVESKVSDEACFGRSLFERL----SHLRHSKHL---- 647
PL L S I VL GD QL +++S+++ S+ ERL ++LR
Sbjct: 901 PLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACG 960
Query: 648 ---------LSIQYRMHPSISFFPNSYFY--ENKIHDSPTVEKRSYEKRFLPGPMYGPYS 696
L YR H ++ P+ FY E ++ P V LP + P
Sbjct: 961 AYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGF-PLI 1019
Query: 697 FINVFGGR-EEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQ 755
F V G E S + E VM+ L + + IG+++PY QV
Sbjct: 1020 FHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQV---- 1075
Query: 756 EKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGS------IGFISNPRRVN 809
EK+ N +KV SV+ FQG E +I+ISTVRSN +GF+SN +R N
Sbjct: 1076 EKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFN 1135
Query: 810 VALTRARHCLWILGNERTLTRN 831
VA+TR + L ILGN L R+
Sbjct: 1136 VAITRPKALLIILGNPHVLVRD 1157
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 160 TEDENEIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLHMKGNLKIIKE 219
T +E + T+ K ++T E ++ I + ++ +N + + ++
Sbjct: 707 TTEERHVGTTDQPEKASSTAETMDEIQ---------IPKARDKEFFNPVLNENQKLAVRR 757
Query: 220 LLCTDSGATVQLIWGPPGTGKTKTV--SMLLVILLQMKFRTLVCTPT 264
+L D +++GPPGTGKT T+ ++L V R LVC P+
Sbjct: 758 ILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPS 804
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 148/326 (45%), Gaps = 55/326 (16%)
Query: 555 LKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQLSGI-------- 604
LK + +T ++ L S P F + IDE E ES + ++G+
Sbjct: 606 LKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVV--AIAGLLTTMDPDT 663
Query: 605 ----KHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQ--------- 651
VL GD QL + S ++ + G SL ERL L ++ + S +
Sbjct: 664 NPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERL-MLHNALYAKSDEGYNPQFVTK 722
Query: 652 ----YRMHPSISFFPNSYFYEN--KIHDSPTVEKRSYEKRFLPGPMYG-PYSFINVFGGR 704
YR H +I PN FY++ K ++ + R++ + P G P F V G
Sbjct: 723 LLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGVPIIFHGVCGED 782
Query: 705 E-EFIEHSCRNMVEVSVVMKILLNLYKGW-------INSKEKLSIGIVSPYIAQVAAIQE 756
E E S N E+ VV++ L L + I+ KE IGI+SPY QV I+
Sbjct: 783 EREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIISPYRKQVEKIRL 839
Query: 757 KLGSKYVNSAGFA----VKVMSVDGFQGGEEDIIIISTVRS-------NNGGSIGFISNP 805
+ SK +KV SV+ FQG E +I+ISTVRS + +GF+ NP
Sbjct: 840 AITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNP 899
Query: 806 RRVNVALTRARHCLWILGNERTLTRN 831
+R+NVALTRA+ L ++GN L+++
Sbjct: 900 KRLNVALTRAKALLIVVGNAAVLSKD 925
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 147/330 (44%), Gaps = 44/330 (13%)
Query: 582 LVIDEAAQLKESESTIPLQ-LSGIKHA-------VLFGDECQLPAMVESKVSDEACFGRS 633
+ IDEA E ES + + L +K A VL GD QL ++ ++ + G S
Sbjct: 642 IFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYS 701
Query: 634 LFERLSHLR---------HSKHLLSI---QYRMHPSISFFPNSYFYENKIHDSPTVEKRS 681
L ERL ++ ++ YR HP+I PN +Y+ ++ V R
Sbjct: 702 LLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRE 761
Query: 682 YEKRF--LPGPMYGPYSFINVFGGRE-EFIEHSCRNMVEVSVVMKILLNLY-KGWINSKE 737
R+ LP + P F V G E E S N E + V L L K
Sbjct: 762 RFCRWEGLPRQDF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKA 820
Query: 738 KLS---IGIVSPYIAQVAAIQEKLGSKYVNSAGFA----VKVMSVDGFQGGEEDIIIIST 790
+LS +G++SPY QV I+ + G +KV SV+ FQG E +I+IST
Sbjct: 821 RLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILIST 880
Query: 791 VRSNNGG-------SIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAK 843
VRS+ ++GF+ NP+R NVA+TRA+ L ++GN L + WK ++ K
Sbjct: 881 VRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPD-WKVFLEFCK 939
Query: 844 AR----QCFFNADDDKDLGKSILEAKKELN 869
C F A D G+++L+ +L+
Sbjct: 940 ENGGYTGCPFPAKLDLQQGQNLLQGLSKLS 969
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 179/387 (46%), Gaps = 53/387 (13%)
Query: 496 SHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKD--LLEDLLKRF 553
S+S + L E ++ +++ + H + R SS N+ ++P ++ + + E+++
Sbjct: 587 SNSAADQLCEKLITSEHV------DAHKIYRLYASSRNQKDIPKILKDNCNVDEEMIDFP 640
Query: 554 C---LKRASLFFSTASSSYMLHSVAMKPLNFL--VIDEAAQLKESESTIPLQLSGIKHA- 607
C L + T ++ L + +F +DEA ESE+ I ++G+ +A
Sbjct: 641 CKEDLMSYKILICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETII--SVAGLLNAE 698
Query: 608 ----VLFGDECQLPAMVESKVSDEACFGRSLFERLSHL-------------RHSKHLLSI 650
VL GD QL ++ S ++ SL ERL R+ L+ +
Sbjct: 699 KGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLI-M 757
Query: 651 QYRMHPSISFFPNSYFYENKIHD-SPTVEKRSYEK-RFLPGPMYGPYSFINVFGGRE-EF 707
YR HP I PN FY+ ++ + + Y LP + P F V G E E
Sbjct: 758 NYRSHPYILEVPNRLFYDGELKACADEISSNQYCMWEHLPSKGF-PVIFHGVPGKDERES 816
Query: 708 IEHSCRNMVEVSVVM----KILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSK-- 761
S N+ E+++++ K+LL K I+ IGI++PY QV I+ + +
Sbjct: 817 NSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKD 876
Query: 762 YVNSAGF-AVKVMSVDGFQGGEEDIIIISTVRS-------NNGGSIGFISNPRRVNVALT 813
+ + G +KV SV+ FQG E +I++STVRS + +IGF+ N +R NVA+T
Sbjct: 877 FQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVT 936
Query: 814 RARHCLWILGNERTLTRNRSVWKALVD 840
RA+ L ++GN L + S W +D
Sbjct: 937 RAKSLLIMVGNPMILRTDES-WGRFID 962
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 19/271 (7%)
Query: 563 STASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQL-PAMVE 621
+T ++ Y ++P ++++EAA++ E+ TI +H +L GD QL P+
Sbjct: 978 TTGAAKYRQILQQVEP-RIVIVEEAAEVLEAH-TIATLSKACQHLILIGDHQQLRPSANV 1035
Query: 622 SKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRS 681
++ SLFERL + L+ Q+RM P I+ + Y++ + + P+V K
Sbjct: 1036 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQD-LENHPSVLKYE 1094
Query: 682 YEKRFLPGPMYGPYSFIN--VFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKL 739
K + ++F + G+ +H +VE+ + L + ++ S+
Sbjct: 1095 QIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYL-----LCQEYLPSQ--- 1146
Query: 740 SIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSI 799
I I++ Y Q+ +++ + K AG +KV VD +QG E DII++S VRSN G +
Sbjct: 1147 -ITILTTYTGQLFCLRKLMPVKTF--AG--IKVHVVDKYQGEENDIILLSLVRSNQEGKV 1201
Query: 800 GFISNPRRVNVALTRARHCLWILGNERTLTR 830
GF+ P R+ VAL+RA+ ++ +GN + L +
Sbjct: 1202 GFLQIPNRICVALSRAKKGMYCIGNMQMLAK 1232
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 141/311 (45%), Gaps = 27/311 (8%)
Query: 553 FCLKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAV--LF 610
F + + L TA S+ L ++ ++ + + IDEA+QL +E T+ L +A L
Sbjct: 1178 FMIYKPDLVMVTADSAKGLLNI-LRDVCAVQIDEASQL--AECTLLGLLKSFNNASFGLI 1234
Query: 611 GDECQLPAM----VESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYF 666
GD QLP +E K+ D G ++ + L YR HP + + F
Sbjct: 1235 GDIHQLPPYCEEGLEGKLKDFG-IGNTMERAIKEKMFPVCTLRNVYRCHPKTTELLSELF 1293
Query: 667 YENKIHDSPTVEKRS--YEKR--FLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVM 722
Y+ + + RS KR F P P + P F+N G + + S N E S+V
Sbjct: 1294 YDGALVSGVSELARSDFMTKRDDFWPNPKF-PMMFVNNTGASTK-MGTSTSNSSEKSIVG 1351
Query: 723 KILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGE 782
+I+ NL N IG++S Y AQ + + E L G VK +VD FQG E
Sbjct: 1352 EIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHL-------RGSGVKCGTVDAFQGSE 1404
Query: 783 EDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDA 842
++III+ S N F+ R+NVA++RA+ I+G+ L R + W +V+
Sbjct: 1405 KEIIIMC---STNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGL-RRANYWSTIVNKI 1460
Query: 843 KARQCFFNADD 853
+ NA+D
Sbjct: 1461 EQNGNLVNAND 1471
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 43/313 (13%)
Query: 541 VEKDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMK-PLNFLVIDEAAQLKESESTIPL 599
E L EDL LK A + T + + + K ++++EAA++ E+ TI
Sbjct: 964 AELRLQEDL---HILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAH-TIAT 1019
Query: 600 QLSGIKHAVLFGDECQL-PAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSI 658
+H +L GD QL P+ ++ SLFERL + L+ Q+RM P I
Sbjct: 1020 LSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEI 1079
Query: 659 SFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEH-------- 710
+ + Y++ + + P+V K YEK + G S N+F F+EH
Sbjct: 1080 ARLLTPHIYQD-LENHPSVLK--YEK------IKGVSS--NLF-----FVEHNFPEQEIQ 1123
Query: 711 ---SCRNMVEVSVVMKILLN-LYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSA 766
S +N E V+++ L + ++ S+ I I++ Y Q+ +++ + +K A
Sbjct: 1124 EGKSHQNQHEAHFVVELCKYFLCQEYLPSQ----ITILTTYTGQLFCLRKLMPAKTF--A 1177
Query: 767 GFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNER 826
G V+V VD +QG E DII++S VRSN G +GF+ R+ VAL+RA+ ++ +GN +
Sbjct: 1178 G--VRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQ 1235
Query: 827 TLTRNRSVWKALV 839
L + +W ++
Sbjct: 1236 MLAKV-PLWSKII 1247
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 145/323 (44%), Gaps = 54/323 (16%)
Query: 555 LKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQLS-GIKHAVLFG 611
++R + T S+S L + ++P F +++DEAAQ E E+ +PL L+ VL G
Sbjct: 755 VERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAG 814
Query: 612 DECQLPAMVESKVSDEACFGRSLFERLSHLRHSKH----LLSIQYRMHPSISFFPNSYFY 667
D QL V S+ + E SL +RL S++ LL YR H +I + + FY
Sbjct: 815 DHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFY 874
Query: 668 ENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEH----SCRNMVEVSVVMK 723
E K+ S K+ K F P + F R E ++ + N EV +++
Sbjct: 875 EGKLMAS---GKQPPHKDFYP---------LTFFTARGEDVQEKNSTAYYNNAEVFEIVE 922
Query: 724 ILLNLYKGWINSKEKL---SIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQG 780
+ + K W S KL SIG+VSPY QV I+ +L K ++ V V V QG
Sbjct: 923 RVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKKRMSE----VSVERVLNVQG 978
Query: 781 GEEDIIIISTVR---------------------SNNGGSIGFISNPRRVNVALTRARHCL 819
+ ++ +STVR S GF+SN + +N A+TRA+ +
Sbjct: 979 KQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLV 1038
Query: 820 WILGNERTLT---RNRSVWKALV 839
++G+ L R R W+ +
Sbjct: 1039 AVVGDPIALCSVGRCRKFWETFI 1061
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 937,354,940
Number of Sequences: 539616
Number of extensions: 40246601
Number of successful extensions: 108015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 107228
Number of HSP's gapped (non-prelim): 781
length of query: 2576
length of database: 191,569,459
effective HSP length: 135
effective length of query: 2441
effective length of database: 118,721,299
effective search space: 289798690859
effective search space used: 289798690859
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)