Query 000053
Match_columns 2576
No_of_seqs 822 out of 4596
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 2.1E-65 7E-70 696.9 42.7 574 54-851 2-637 (646)
2 2xzl_A ATP-dependent helicase 100.0 6E-58 2E-62 629.0 40.5 580 32-852 164-790 (802)
3 2wjy_A Regulator of nonsense t 100.0 8.4E-57 2.9E-61 616.6 43.4 569 43-852 172-788 (800)
4 2gk6_A Regulator of nonsense t 100.0 2.6E-57 8.8E-62 613.5 35.8 565 48-852 1-612 (624)
5 1pjr_A PCRA; DNA repair, DNA r 100.0 4.7E-42 1.6E-46 472.3 35.9 346 1068-1536 10-362 (724)
6 1uaa_A REP helicase, protein ( 100.0 9.1E-40 3.1E-44 447.9 35.9 343 1069-1534 2-351 (673)
7 3lfu_A DNA helicase II; SF1 he 100.0 3.5E-40 1.2E-44 451.1 31.7 346 1068-1537 8-359 (647)
8 3u4q_A ATP-dependent helicase/ 100.0 4.2E-36 1.4E-40 433.4 31.0 136 1325-1472 346-495 (1232)
9 1w36_B RECB, exodeoxyribonucle 100.0 9.2E-34 3.2E-38 408.0 24.3 130 1325-1473 329-465 (1180)
10 3u4q_B ATP-dependent helicase/ 99.9 3.5E-26 1.2E-30 330.4 33.7 186 1301-1516 132-333 (1166)
11 3upu_A ATP-dependent DNA helic 99.9 4.8E-24 1.6E-28 279.3 24.2 86 1366-1470 127-212 (459)
12 2xzl_A ATP-dependent helicase 99.9 6E-23 2E-27 282.6 23.2 223 1365-1638 515-766 (802)
13 2wjy_A Regulator of nonsense t 99.9 2.1E-22 7.3E-27 276.7 19.4 221 1365-1638 513-764 (800)
14 2gk6_A Regulator of nonsense t 99.9 1.3E-21 4.4E-26 265.0 22.5 220 1365-1638 337-588 (624)
15 4b3f_X DNA-binding protein smu 99.8 2.3E-21 7.8E-26 264.1 16.1 224 1365-1638 364-614 (646)
16 3e1s_A Exodeoxyribonuclease V, 99.8 5E-22 1.7E-26 264.9 8.9 200 578-829 279-545 (574)
17 3e1s_A Exodeoxyribonuclease V, 99.8 7.5E-20 2.6E-24 243.9 22.6 81 1366-1470 278-360 (574)
18 1w36_D RECD, exodeoxyribonucle 99.8 4.4E-19 1.5E-23 239.0 13.6 239 578-828 262-586 (608)
19 3lfu_A DNA helicase II; SF1 he 99.8 5E-18 1.7E-22 232.2 22.2 149 578-755 213-364 (647)
20 3upu_A ATP-dependent DNA helic 99.7 3.7E-18 1.3E-22 223.6 10.5 84 578-667 128-212 (459)
21 3vkw_A Replicase large subunit 99.7 1.5E-17 5.2E-22 211.0 12.7 200 578-844 234-435 (446)
22 3dmn_A Putative DNA helicase; 99.7 3.3E-17 1.1E-21 186.4 12.2 137 1452-1637 2-155 (174)
23 1uaa_A REP helicase, protein ( 99.6 3E-15 1E-19 205.4 18.0 144 577-750 206-354 (673)
24 1w36_D RECD, exodeoxyribonucle 99.6 8.5E-15 2.9E-19 197.4 21.1 103 1366-1470 261-376 (608)
25 1pjr_A PCRA; DNA repair, DNA r 99.6 6.3E-15 2.2E-19 203.1 19.6 153 578-758 216-371 (724)
26 3vkw_A Replicase large subunit 99.5 5.6E-13 1.9E-17 169.4 20.5 187 1367-1636 234-422 (446)
27 3u4q_A ATP-dependent helicase/ 99.4 4.6E-12 1.6E-16 183.7 25.0 66 213-281 12-83 (1232)
28 1xi4_A Clathrin heavy chain; a 99.1 5.4E-09 1.8E-13 145.4 26.5 261 1668-1981 1101-1409(1630)
29 1xi4_A Clathrin heavy chain; a 99.0 3.5E-08 1.2E-12 137.5 27.9 229 1697-1940 995-1250(1630)
30 3dmn_A Putative DNA helicase; 98.9 8.4E-10 2.9E-14 125.5 4.9 144 649-825 2-154 (174)
31 1w36_B RECB, exodeoxyribonucle 98.5 3.7E-06 1.3E-10 122.0 25.4 173 578-760 377-573 (1180)
32 1b89_A Protein (clathrin heavy 98.5 7.8E-07 2.7E-11 113.6 15.2 243 1670-1950 30-308 (449)
33 3u4q_B ATP-dependent helicase/ 98.4 1.7E-06 5.8E-11 125.7 17.0 152 580-760 203-365 (1166)
34 3mkq_A Coatomer beta'-subunit; 98.3 9.9E-06 3.4E-10 112.9 22.6 74 1762-1835 658-731 (814)
35 3mkq_A Coatomer beta'-subunit; 98.2 9.4E-06 3.2E-10 113.1 16.8 97 1743-1839 681-777 (814)
36 1b89_A Protein (clathrin heavy 98.1 4.4E-05 1.5E-09 97.6 17.7 212 1697-1923 71-307 (449)
37 1w36_C RECC, exodeoxyribonucle 98.0 2.9E-06 1E-10 121.9 6.9 74 1547-1637 657-734 (1122)
38 3mkq_B Coatomer subunit alpha; 98.0 0.00013 4.4E-09 81.9 18.5 133 1765-1942 14-146 (177)
39 2xpi_A Anaphase-promoting comp 97.9 0.00094 3.2E-08 89.2 28.5 136 1787-1936 307-466 (597)
40 3ulq_A Response regulator aspa 97.9 0.0011 3.8E-08 83.8 27.6 225 1691-1952 107-367 (383)
41 2xpi_A Anaphase-promoting comp 97.9 0.00075 2.6E-08 90.1 26.6 155 1769-1937 352-542 (597)
42 1w3b_A UDP-N-acetylglucosamine 97.9 0.00076 2.6E-08 85.1 24.6 102 1768-1883 181-295 (388)
43 2y4t_A DNAJ homolog subfamily 97.9 0.00092 3.1E-08 85.7 25.3 179 1765-1947 152-352 (450)
44 3ieg_A DNAJ homolog subfamily 97.8 0.0021 7.1E-08 79.0 26.7 170 1764-1946 128-328 (359)
45 1w3b_A UDP-N-acetylglucosamine 97.8 0.0017 6E-08 81.7 25.5 70 1767-1836 112-194 (388)
46 1qqe_A Vesicular transport pro 97.7 0.0023 8E-08 78.0 24.1 162 1739-1946 33-221 (292)
47 2ifu_A Gamma-SNAP; membrane fu 97.7 0.0012 4.2E-08 81.1 21.7 94 1698-1809 2-100 (307)
48 4a1s_A PINS, partner of inscut 97.7 0.0022 7.4E-08 81.3 24.6 183 1693-1884 54-288 (411)
49 1qqe_A Vesicular transport pro 97.7 0.0013 4.4E-08 80.3 21.5 161 1696-1885 46-225 (292)
50 3mkq_B Coatomer subunit alpha; 97.7 0.00069 2.4E-08 76.0 16.8 115 1697-1838 15-129 (177)
51 3hym_B Cell division cycle pro 97.7 0.0014 4.7E-08 79.8 21.5 169 1694-1884 29-218 (330)
52 3uq3_A Heat shock protein STI1 97.7 0.00087 3E-08 78.4 18.8 210 1694-1952 12-235 (258)
53 3sf4_A G-protein-signaling mod 97.7 0.0023 7.9E-08 80.3 23.6 244 1694-1952 16-335 (406)
54 3ro2_A PINS homolog, G-protein 97.6 0.0038 1.3E-07 75.5 24.3 243 1693-1950 11-329 (338)
55 3q15_A PSP28, response regulat 97.6 0.0083 2.8E-07 75.7 27.3 161 1690-1883 104-285 (378)
56 3fp2_A TPR repeat-containing p 97.5 0.0017 6E-08 85.1 20.6 146 1788-1953 246-407 (537)
57 4a1s_A PINS, partner of inscut 97.5 0.0037 1.3E-07 79.1 22.3 181 1693-1883 92-327 (411)
58 3ieg_A DNAJ homolog subfamily 97.5 0.011 3.6E-07 72.6 25.1 111 1763-1883 161-296 (359)
59 2gw1_A Mitochondrial precursor 97.4 0.0037 1.3E-07 81.3 21.5 72 1696-1768 15-98 (514)
60 4eqf_A PEX5-related protein; a 97.3 0.0021 7.3E-08 80.1 16.6 219 1673-1953 66-310 (365)
61 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0047 1.6E-07 75.9 19.1 16 1700-1715 29-44 (307)
62 3sf4_A G-protein-signaling mod 97.3 0.02 6.9E-07 71.7 25.2 181 1693-1883 53-291 (406)
63 2y4t_A DNAJ homolog subfamily 97.3 0.019 6.4E-07 73.5 25.2 111 1763-1883 184-319 (450)
64 3mkr_A Coatomer subunit epsilo 97.3 0.02 6.7E-07 70.0 24.1 139 1690-1838 2-157 (291)
65 3cv0_A Peroxisome targeting si 97.3 0.013 4.3E-07 71.1 22.1 18 1697-1714 31-48 (327)
66 3ulq_A Response regulator aspa 97.2 0.03 1E-06 70.5 26.0 24 1692-1715 148-171 (383)
67 2gw1_A Mitochondrial precursor 97.2 0.01 3.6E-07 77.0 22.3 21 1693-1713 79-99 (514)
68 1fch_A Peroxisomal targeting s 97.2 0.011 3.8E-07 73.2 21.1 18 1697-1714 74-91 (368)
69 3nf1_A KLC 1, kinesin light ch 97.2 0.0069 2.4E-07 72.8 18.2 162 1693-1884 33-220 (311)
70 2ho1_A Type 4 fimbrial biogene 97.1 0.02 6.9E-07 66.9 21.3 114 1693-1836 43-166 (252)
71 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.007 2.4E-07 71.6 16.8 231 1697-1946 15-268 (275)
72 2pl2_A Hypothetical conserved 97.1 0.0043 1.5E-07 72.1 14.4 18 1697-1714 15-32 (217)
73 3fp2_A TPR repeat-containing p 97.1 0.02 6.9E-07 74.9 22.6 174 1696-1884 211-403 (537)
74 3ro2_A PINS homolog, G-protein 97.0 0.018 6.3E-07 69.4 20.1 223 1693-1937 49-329 (338)
75 1fch_A Peroxisomal targeting s 97.0 0.0043 1.5E-07 77.0 14.7 173 1763-1953 105-314 (368)
76 3u4t_A TPR repeat-containing p 97.0 0.023 8E-07 67.1 20.3 136 1692-1836 8-167 (272)
77 2xm6_A Protein corresponding t 96.8 0.15 5.1E-06 66.7 28.1 51 1924-1983 380-433 (490)
78 3hym_B Cell division cycle pro 96.8 0.043 1.5E-06 66.4 21.4 181 1694-1883 63-260 (330)
79 4eqf_A PEX5-related protein; a 96.8 0.025 8.5E-07 70.3 18.9 139 1695-1835 107-271 (365)
80 2xm6_A Protein corresponding t 96.7 0.1 3.5E-06 68.2 25.0 68 1769-1836 236-321 (490)
81 1ouv_A Conserved hypothetical 96.7 0.06 2E-06 64.1 20.7 109 1693-1810 12-139 (273)
82 2vq2_A PILW, putative fimbrial 96.6 0.12 4.2E-06 58.4 21.8 113 1693-1835 14-137 (225)
83 3q15_A PSP28, response regulat 96.6 0.096 3.3E-06 65.9 22.4 24 1692-1715 146-169 (378)
84 1hz4_A MALT regulatory protein 96.6 0.46 1.6E-05 59.2 28.4 252 1691-1951 18-320 (373)
85 3vtx_A MAMA; tetratricopeptide 96.4 0.074 2.5E-06 59.1 17.7 112 1694-1835 12-131 (184)
86 3edt_B KLC 2, kinesin light ch 96.4 0.056 1.9E-06 63.5 17.6 22 1863-1884 173-194 (283)
87 3uq3_A Heat shock protein STI1 96.3 0.038 1.3E-06 64.2 15.6 127 1695-1836 46-198 (258)
88 2q7f_A YRRB protein; TPR, prot 96.3 0.02 6.7E-07 66.3 12.8 137 1697-1835 33-183 (243)
89 3vtx_A MAMA; tetratricopeptide 96.3 0.089 3E-06 58.4 17.4 84 1745-1836 7-98 (184)
90 2ho1_A Type 4 fimbrial biogene 96.1 0.2 6.8E-06 58.3 20.2 184 1738-1947 32-232 (252)
91 3cv0_A Peroxisome targeting si 96.1 0.076 2.6E-06 64.1 16.7 19 1696-1714 64-82 (327)
92 2pl2_A Hypothetical conserved 96.0 0.076 2.6E-06 61.5 15.8 23 1788-1810 42-64 (217)
93 3mkr_A Coatomer subunit epsilo 96.0 0.093 3.2E-06 64.0 17.2 146 1692-1844 106-268 (291)
94 3nf1_A KLC 1, kinesin light ch 96.0 0.28 9.4E-06 58.6 20.9 128 1745-1884 29-178 (311)
95 1xnf_A Lipoprotein NLPI; TPR, 95.9 0.32 1.1E-05 57.1 20.6 91 1741-1839 41-139 (275)
96 2w58_A DNAI, primosome compone 95.8 0.01 3.5E-07 68.3 7.2 35 228-262 55-89 (202)
97 3qky_A Outer membrane assembly 95.8 0.21 7.1E-06 59.1 18.6 101 1670-1810 13-122 (261)
98 2q7f_A YRRB protein; TPR, prot 95.7 0.15 5.3E-06 58.6 16.4 49 1787-1835 93-149 (243)
99 1tue_A Replication protein E1; 95.5 0.0091 3.1E-07 68.6 4.8 37 215-251 46-82 (212)
100 3as5_A MAMA; tetratricopeptide 95.5 0.2 6.8E-06 54.6 15.6 114 1693-1836 14-135 (186)
101 2orw_A Thymidine kinase; TMTK, 95.4 0.012 4.2E-07 67.0 5.7 38 227-264 3-40 (184)
102 3edt_B KLC 2, kinesin light ch 95.4 0.17 5.8E-06 59.3 15.9 23 1693-1715 49-71 (283)
103 2gxq_A Heat resistant RNA depe 95.4 0.029 9.9E-07 64.5 8.9 87 1045-1162 6-95 (207)
104 3iuy_A Probable ATP-dependent 95.4 0.04 1.4E-06 64.5 10.1 90 1045-1162 25-117 (228)
105 3ec2_A DNA replication protein 95.4 0.017 5.8E-07 65.2 6.5 36 227-262 38-74 (180)
106 3b6e_A Interferon-induced heli 95.3 0.011 3.7E-07 68.4 4.9 61 214-278 39-106 (216)
107 2qgz_A Helicase loader, putati 95.3 0.011 3.8E-07 73.1 5.2 37 227-263 152-189 (308)
108 2gxq_A Heat resistant RNA depe 95.3 0.017 5.8E-07 66.4 6.4 61 214-278 29-95 (207)
109 1rif_A DAR protein, DNA helica 95.3 0.017 5.9E-07 70.2 6.8 62 213-278 118-180 (282)
110 1hz4_A MALT regulatory protein 95.3 2.3 8E-05 52.6 26.6 182 1692-1883 58-277 (373)
111 3gw4_A Uncharacterized protein 95.3 1.6 5.6E-05 48.4 22.8 13 1697-1709 2-14 (203)
112 3bos_A Putative DNA replicatio 95.3 0.023 7.7E-07 66.7 7.5 39 226-264 51-89 (242)
113 4gcn_A Protein STI-1; structur 95.3 0.061 2.1E-06 56.8 10.1 85 1697-1809 18-107 (127)
114 4gyw_A UDP-N-acetylglucosamine 95.2 0.066 2.3E-06 73.7 13.0 114 1693-1836 15-136 (723)
115 3b6e_A Interferon-induced heli 95.2 0.033 1.1E-06 64.2 8.7 73 1066-1162 30-106 (216)
116 4abn_A Tetratricopeptide repea 95.2 0.066 2.3E-06 70.1 12.5 190 1696-1934 111-327 (474)
117 4gco_A Protein STI-1; structur 95.2 0.041 1.4E-06 58.2 8.7 93 1673-1810 14-106 (126)
118 2vq2_A PILW, putative fimbrial 95.2 1.2 4.2E-05 50.0 21.8 119 1745-1883 10-137 (225)
119 4g1t_A Interferon-induced prot 95.2 0.3 1E-05 62.8 18.5 23 1692-1714 56-78 (472)
120 2yhc_A BAMD, UPF0169 lipoprote 95.2 0.45 1.5E-05 55.1 18.3 53 1697-1768 14-66 (225)
121 1ouv_A Conserved hypothetical 95.2 0.41 1.4E-05 56.8 18.3 110 1694-1810 45-175 (273)
122 4i17_A Hypothetical protein; T 95.2 0.1 3.6E-06 60.1 12.7 122 1670-1835 5-141 (228)
123 1l8q_A Chromosomal replication 95.2 0.031 1.1E-06 69.3 8.7 40 226-265 36-75 (324)
124 2p65_A Hypothetical protein PF 95.1 0.019 6.3E-07 64.4 5.9 51 212-262 26-85 (187)
125 3te6_A Regulatory protein SIR3 95.0 0.012 4E-07 72.8 4.1 27 227-253 45-71 (318)
126 1vec_A ATP-dependent RNA helic 95.0 0.059 2E-06 61.9 9.8 84 1045-1162 8-94 (206)
127 3u4t_A TPR repeat-containing p 95.0 0.36 1.2E-05 56.7 17.0 99 1737-1835 17-132 (272)
128 2dr3_A UPF0273 protein PH0284; 94.9 0.025 8.7E-07 66.7 6.6 48 227-275 23-70 (247)
129 2pl3_A Probable ATP-dependent 94.9 0.033 1.1E-06 65.6 7.5 51 228-278 63-120 (236)
130 1jbk_A CLPB protein; beta barr 94.8 0.036 1.2E-06 62.1 7.3 52 211-262 25-85 (195)
131 2fz4_A DNA repair protein RAD2 94.8 0.023 7.7E-07 67.5 5.8 44 230-276 111-154 (237)
132 2b8t_A Thymidine kinase; deoxy 94.8 0.022 7.6E-07 66.8 5.5 38 227-264 12-49 (223)
133 3dkp_A Probable ATP-dependent 94.8 0.065 2.2E-06 63.5 9.6 86 1044-1162 33-121 (245)
134 1t6n_A Probable ATP-dependent 94.7 0.071 2.4E-06 62.0 9.6 83 1045-1162 19-105 (220)
135 3urz_A Uncharacterized protein 94.7 0.22 7.4E-06 57.2 13.5 30 1671-1715 3-32 (208)
136 3gw4_A Uncharacterized protein 94.6 0.95 3.2E-05 50.4 18.5 89 1693-1781 32-132 (203)
137 1q0u_A Bstdead; DEAD protein, 94.6 0.066 2.3E-06 62.3 8.9 85 1045-1163 9-96 (219)
138 3as5_A MAMA; tetratricopeptide 94.6 0.87 3E-05 49.3 17.6 60 1744-1811 9-68 (186)
139 4gyw_A UDP-N-acetylglucosamine 94.6 0.24 8.3E-06 68.2 15.7 83 1745-1835 11-101 (723)
140 3n70_A Transport activator; si 94.6 0.023 8E-07 61.9 4.6 37 226-262 23-60 (145)
141 1qde_A EIF4A, translation init 94.5 0.035 1.2E-06 64.7 6.5 62 214-279 42-106 (224)
142 1hv8_A Putative ATP-dependent 94.5 0.039 1.3E-06 69.0 7.1 63 214-279 34-98 (367)
143 2r8r_A Sensor protein; KDPD, P 94.5 0.027 9.3E-07 65.9 5.0 34 230-263 9-42 (228)
144 2kjq_A DNAA-related protein; s 94.4 0.041 1.4E-06 60.4 6.3 39 226-264 35-73 (149)
145 2r2a_A Uncharacterized protein 94.4 0.018 6E-07 66.6 3.4 25 227-251 5-29 (199)
146 3bh0_A DNAB-like replicative h 94.4 0.062 2.1E-06 66.5 8.4 65 213-278 54-118 (315)
147 2pl3_A Probable ATP-dependent 94.3 0.12 4.2E-06 60.7 10.5 88 1045-1162 30-120 (236)
148 3ro3_A PINS homolog, G-protein 94.3 0.47 1.6E-05 50.1 14.3 24 1692-1715 14-37 (164)
149 3t15_A Ribulose bisphosphate c 94.3 0.024 8.4E-07 69.4 4.5 35 227-264 36-70 (293)
150 2qfc_A PLCR protein; TPR, HTH, 94.2 1.1 3.8E-05 54.0 19.0 19 1695-1713 83-101 (293)
151 4b4t_Q 26S proteasome regulato 94.2 0.32 1.1E-05 61.7 14.9 68 1697-1769 14-81 (434)
152 4ga2_A E3 SUMO-protein ligase 94.2 0.085 2.9E-06 57.4 8.1 108 1695-1832 5-120 (150)
153 3fe2_A Probable ATP-dependent 94.2 0.12 4.1E-06 61.2 10.0 89 1046-1163 35-126 (242)
154 1qde_A EIF4A, translation init 94.2 0.083 2.8E-06 61.5 8.5 84 1045-1162 19-105 (224)
155 3bor_A Human initiation factor 94.1 0.033 1.1E-06 65.9 4.8 62 214-279 58-122 (237)
156 1vec_A ATP-dependent RNA helic 94.1 0.05 1.7E-06 62.5 6.3 62 214-279 31-95 (206)
157 3syl_A Protein CBBX; photosynt 94.0 0.076 2.6E-06 65.1 8.2 38 227-264 67-108 (309)
158 2fz4_A DNA repair protein RAD2 94.0 0.1 3.5E-06 61.8 8.9 63 1066-1161 90-155 (237)
159 3dm5_A SRP54, signal recogniti 94.0 0.036 1.2E-06 71.2 5.3 36 227-262 100-135 (443)
160 1t6n_A Probable ATP-dependent 94.0 0.055 1.9E-06 62.9 6.5 62 214-279 42-106 (220)
161 2z83_A Helicase/nucleoside tri 94.0 0.038 1.3E-06 72.1 5.5 51 226-276 20-71 (459)
162 3ber_A Probable ATP-dependent 93.9 0.1 3.4E-06 62.3 8.7 84 1045-1162 48-134 (249)
163 3llm_A ATP-dependent RNA helic 93.9 0.093 3.2E-06 62.0 8.3 52 227-278 76-132 (235)
164 3iuy_A Probable ATP-dependent 93.9 0.071 2.4E-06 62.4 7.2 61 214-278 48-117 (228)
165 1ofh_A ATP-dependent HSL prote 93.9 0.053 1.8E-06 66.4 6.3 34 227-263 50-83 (310)
166 3gyz_A Chaperone protein IPGC; 93.9 0.35 1.2E-05 53.0 12.2 84 1697-1810 46-129 (151)
167 3ly5_A ATP-dependent RNA helic 93.9 0.062 2.1E-06 64.7 6.7 62 214-279 82-150 (262)
168 3dkp_A Probable ATP-dependent 93.8 0.073 2.5E-06 63.0 7.2 62 214-279 57-122 (245)
169 2v6i_A RNA helicase; membrane, 93.8 0.047 1.6E-06 70.7 6.0 49 227-275 2-51 (431)
170 3u61_B DNA polymerase accessor 93.8 0.09 3.1E-06 65.1 8.2 58 217-277 38-95 (324)
171 3bor_A Human initiation factor 93.8 0.083 2.8E-06 62.4 7.5 83 1045-1162 35-121 (237)
172 2bjv_A PSP operon transcriptio 93.8 0.052 1.8E-06 65.2 5.9 39 226-264 28-66 (265)
173 3pvs_A Replication-associated 93.7 0.097 3.3E-06 67.9 8.7 55 219-277 43-97 (447)
174 4g1t_A Interferon-induced prot 93.7 2.1 7.1E-05 54.8 21.3 19 1695-1713 102-120 (472)
175 2qz4_A Paraplegin; AAA+, SPG7, 93.7 0.042 1.4E-06 65.6 4.9 35 227-264 39-73 (262)
176 1njg_A DNA polymerase III subu 93.7 0.054 1.8E-06 63.1 5.6 36 218-253 36-71 (250)
177 3kl4_A SRP54, signal recogniti 93.7 0.042 1.4E-06 70.6 5.0 36 227-262 97-132 (433)
178 2jlq_A Serine protease subunit 93.7 0.043 1.5E-06 71.4 5.2 49 227-275 19-68 (451)
179 1q0u_A Bstdead; DEAD protein, 93.7 0.05 1.7E-06 63.4 5.2 62 214-279 32-96 (219)
180 4abn_A Tetratricopeptide repea 93.6 0.35 1.2E-05 63.2 13.9 85 1745-1837 104-205 (474)
181 2oxc_A Probable ATP-dependent 93.6 0.12 4.2E-06 60.6 8.5 82 1046-1162 30-115 (230)
182 2hr2_A Hypothetical protein; a 93.6 0.2 6.8E-06 55.6 9.5 108 1671-1810 10-127 (159)
183 2oca_A DAR protein, ATP-depend 93.6 0.075 2.6E-06 70.1 7.4 62 213-278 118-180 (510)
184 2ond_A Cleavage stimulation fa 93.5 2.3 7.7E-05 51.7 20.1 48 1763-1810 106-159 (308)
185 2v1u_A Cell division control p 93.5 0.11 3.8E-06 65.5 8.6 30 225-254 42-71 (387)
186 3hr8_A Protein RECA; alpha and 93.5 0.048 1.6E-06 68.4 5.0 54 214-267 46-101 (356)
187 3pey_A ATP-dependent RNA helic 93.5 0.11 3.7E-06 65.6 8.3 63 214-278 33-98 (395)
188 1xx6_A Thymidine kinase; NESG, 93.4 0.064 2.2E-06 61.5 5.6 38 227-264 8-45 (191)
189 3upv_A Heat shock protein STI1 93.4 0.19 6.4E-06 52.2 8.8 84 1697-1810 14-97 (126)
190 3ber_A Probable ATP-dependent 93.4 0.13 4.3E-06 61.5 8.3 62 214-279 71-135 (249)
191 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.074 2.5E-06 62.0 6.2 49 226-275 22-70 (235)
192 1hh8_A P67PHOX, NCF-2, neutrop 93.4 0.39 1.4E-05 54.3 12.2 85 1693-1810 12-96 (213)
193 3fe2_A Probable ATP-dependent 93.4 0.17 5.7E-06 59.9 9.2 64 214-281 57-128 (242)
194 2ond_A Cleavage stimulation fa 93.4 0.42 1.5E-05 58.2 13.2 135 1697-1837 109-267 (308)
195 3h4m_A Proteasome-activating n 93.4 0.097 3.3E-06 63.4 7.4 34 227-263 51-84 (285)
196 3oiy_A Reverse gyrase helicase 93.3 0.1 3.4E-06 66.9 7.8 66 1067-1162 19-87 (414)
197 3oiy_A Reverse gyrase helicase 93.3 0.1 3.5E-06 66.9 7.8 51 228-278 37-87 (414)
198 3fht_A ATP-dependent RNA helic 93.3 0.2 6.7E-06 63.8 10.4 85 1045-1163 30-119 (412)
199 3io5_A Recombination and repai 93.3 0.045 1.5E-06 67.0 4.1 54 214-267 11-70 (333)
200 2qby_B CDC6 homolog 3, cell di 93.3 0.12 4.1E-06 65.3 8.4 38 226-263 44-89 (384)
201 3ro3_A PINS homolog, G-protein 93.3 6 0.00021 41.3 20.7 26 1743-1768 9-34 (164)
202 3llm_A ATP-dependent RNA helic 93.3 0.11 3.8E-06 61.3 7.5 71 1067-1162 59-132 (235)
203 3fmo_B ATP-dependent RNA helic 93.3 0.2 6.8E-06 61.5 10.0 85 1045-1163 97-186 (300)
204 2z4s_A Chromosomal replication 93.3 0.11 3.6E-06 67.6 7.8 39 227-265 130-170 (440)
205 1hv8_A Putative ATP-dependent 93.2 0.096 3.3E-06 65.3 7.3 84 1045-1163 11-98 (367)
206 1s2m_A Putative ATP-dependent 93.2 0.12 4.2E-06 65.5 8.3 62 214-279 49-113 (400)
207 2gno_A DNA polymerase III, gam 93.2 0.15 5.1E-06 62.8 8.6 82 216-307 8-94 (305)
208 1yks_A Genome polyprotein [con 93.2 0.063 2.2E-06 69.7 5.6 50 227-276 8-58 (440)
209 3u3w_A Transcriptional activat 93.2 2.2 7.6E-05 51.3 19.1 22 1694-1715 82-103 (293)
210 1a5t_A Delta prime, HOLB; zinc 93.1 0.13 4.6E-06 64.1 8.3 38 217-254 14-51 (334)
211 1wrb_A DJVLGB; RNA helicase, D 93.1 0.12 4.1E-06 61.5 7.5 62 214-279 51-124 (253)
212 2chg_A Replication factor C sm 93.1 0.077 2.6E-06 60.9 5.6 27 229-255 40-66 (226)
213 3ly5_A ATP-dependent RNA helic 93.1 0.12 4.2E-06 62.0 7.6 86 1047-1162 61-149 (262)
214 1s2m_A Putative ATP-dependent 93.1 0.17 5.8E-06 64.2 9.4 84 1045-1162 26-112 (400)
215 3co5_A Putative two-component 93.1 0.032 1.1E-06 60.7 2.2 22 227-248 27-48 (143)
216 2z0m_A 337AA long hypothetical 93.1 0.1 3.6E-06 64.3 7.2 58 214-278 22-79 (337)
217 3pey_A ATP-dependent RNA helic 93.1 0.19 6.4E-06 63.4 9.7 84 1045-1162 10-98 (395)
218 1wrb_A DJVLGB; RNA helicase, D 93.0 0.18 6.2E-06 59.9 8.9 77 1068-1162 44-123 (253)
219 2va8_A SSO2462, SKI2-type heli 92.9 0.17 5.9E-06 69.7 9.7 51 225-275 44-95 (715)
220 4a1f_A DNAB helicase, replicat 92.9 0.16 5.4E-06 63.3 8.3 66 213-279 32-97 (338)
221 4fcw_A Chaperone protein CLPB; 92.7 0.058 2E-06 66.2 4.1 35 228-262 48-82 (311)
222 1u94_A RECA protein, recombina 92.7 0.092 3.1E-06 66.0 5.8 51 215-265 49-101 (356)
223 2r6a_A DNAB helicase, replicat 92.6 0.17 5.8E-06 65.9 8.5 64 213-277 189-253 (454)
224 4b4t_K 26S protease regulatory 92.6 0.077 2.6E-06 68.1 5.0 36 227-265 206-241 (428)
225 2zts_A Putative uncharacterize 92.6 0.073 2.5E-06 62.9 4.6 49 227-276 30-79 (251)
226 1wp9_A ATP-dependent RNA helic 92.6 0.15 5E-06 66.0 7.8 60 214-278 15-75 (494)
227 1sxj_C Activator 1 40 kDa subu 92.5 0.071 2.4E-06 66.6 4.6 26 230-255 49-74 (340)
228 3eiq_A Eukaryotic initiation f 92.5 0.16 5.3E-06 64.8 7.8 62 214-279 68-132 (414)
229 1cr0_A DNA primase/helicase; R 92.4 0.21 7.1E-06 61.0 8.5 63 215-278 23-86 (296)
230 2z0m_A 337AA long hypothetical 92.4 0.18 6E-06 62.2 8.0 61 1069-1162 16-79 (337)
231 2xau_A PRE-mRNA-splicing facto 92.4 0.12 3.9E-06 71.8 6.7 52 227-278 109-163 (773)
232 2zr9_A Protein RECA, recombina 92.4 0.099 3.4E-06 65.6 5.6 51 215-265 47-99 (349)
233 3rkv_A Putative peptidylprolyl 92.4 0.33 1.1E-05 52.8 9.3 106 1672-1810 11-122 (162)
234 1xwi_A SKD1 protein; VPS4B, AA 92.3 0.079 2.7E-06 65.8 4.6 34 227-262 45-78 (322)
235 4i17_A Hypothetical protein; T 92.3 0.9 3.1E-05 52.1 13.3 126 1745-1884 9-142 (228)
236 1vma_A Cell division protein F 92.3 0.1 3.5E-06 64.2 5.4 37 227-263 104-140 (306)
237 1q57_A DNA primase/helicase; d 92.3 0.12 4.2E-06 68.1 6.6 63 215-278 230-293 (503)
238 3p32_A Probable GTPase RV1496/ 92.2 0.16 5.3E-06 64.0 7.0 48 217-264 69-116 (355)
239 3fht_A ATP-dependent RNA helic 92.2 0.21 7.1E-06 63.5 8.3 64 214-279 53-119 (412)
240 1fnn_A CDC6P, cell division co 92.2 0.18 6.2E-06 63.6 7.8 34 229-262 46-80 (389)
241 1d2n_A N-ethylmaleimide-sensit 92.2 0.064 2.2E-06 64.7 3.4 31 226-259 63-93 (272)
242 2fo7_A Synthetic consensus TPR 92.1 0.76 2.6E-05 46.7 11.2 113 1693-1835 7-127 (136)
243 4b4t_M 26S protease regulatory 92.0 0.066 2.3E-06 68.8 3.4 36 227-265 215-250 (434)
244 1rif_A DAR protein, DNA helica 92.0 0.16 5.3E-06 61.7 6.6 66 1068-1162 112-180 (282)
245 3b9p_A CG5977-PA, isoform A; A 92.0 0.091 3.1E-06 64.1 4.5 33 227-262 54-86 (297)
246 2p6r_A Afuhel308 helicase; pro 92.0 0.12 4.1E-06 71.2 6.1 60 213-276 30-89 (702)
247 3l9o_A ATP-dependent RNA helic 91.9 0.23 8E-06 71.3 9.2 69 1065-1163 180-251 (1108)
248 1gm5_A RECG; helicase, replica 91.9 0.16 5.4E-06 70.2 7.2 52 228-279 390-441 (780)
249 2j37_W Signal recognition part 91.9 0.14 4.7E-06 67.2 6.3 45 227-271 101-148 (504)
250 3fho_A ATP-dependent RNA helic 91.9 0.19 6.4E-06 66.5 7.7 63 214-278 147-212 (508)
251 3sz7_A HSC70 cochaperone (SGT) 91.9 0.36 1.2E-05 52.7 8.8 85 1696-1810 20-104 (164)
252 2dba_A Smooth muscle cell asso 91.9 0.65 2.2E-05 48.7 10.6 99 1670-1810 26-124 (148)
253 3eie_A Vacuolar protein sortin 91.9 0.07 2.4E-06 66.2 3.3 34 227-263 51-84 (322)
254 2v3c_C SRP54, signal recogniti 91.9 0.083 2.8E-06 68.1 4.1 37 227-263 99-135 (432)
255 2oxc_A Probable ATP-dependent 91.8 0.17 5.8E-06 59.4 6.4 60 215-278 53-115 (230)
256 1xp8_A RECA protein, recombina 91.8 0.13 4.3E-06 65.0 5.6 52 214-265 59-112 (366)
257 1sxj_D Activator 1 41 kDa subu 91.8 0.12 4.2E-06 64.4 5.5 36 230-265 61-99 (353)
258 2px0_A Flagellar biosynthesis 91.8 0.13 4.5E-06 63.0 5.6 37 227-263 105-142 (296)
259 1xti_A Probable ATP-dependent 91.8 0.16 5.4E-06 64.2 6.5 62 214-279 36-100 (391)
260 2zj8_A DNA helicase, putative 91.7 0.15 5.1E-06 70.4 6.6 50 227-276 39-89 (720)
261 1nlf_A Regulatory protein REPA 91.7 0.2 6.9E-06 60.7 7.1 50 227-277 30-89 (279)
262 2qp9_X Vacuolar protein sortin 91.6 0.1 3.5E-06 65.7 4.5 33 228-263 85-117 (355)
263 3uk6_A RUVB-like 2; hexameric 91.6 0.13 4.3E-06 64.8 5.4 25 227-251 70-94 (368)
264 4a15_A XPD helicase, ATP-depen 91.6 0.24 8.2E-06 66.9 8.4 67 213-279 8-75 (620)
265 4b4t_J 26S protease regulatory 91.6 0.077 2.6E-06 67.3 3.3 35 227-264 182-216 (405)
266 2cvh_A DNA repair and recombin 91.6 0.18 6.1E-06 58.3 6.3 47 215-264 7-54 (220)
267 1iqp_A RFCS; clamp loader, ext 91.6 0.13 4.3E-06 63.4 5.2 56 220-276 40-98 (327)
268 4b4t_L 26S protease subunit RP 91.6 0.078 2.7E-06 68.2 3.4 36 227-265 215-250 (437)
269 1xti_A Probable ATP-dependent 91.6 0.29 9.8E-06 61.8 8.6 83 1046-1163 14-100 (391)
270 3bgw_A DNAB-like replicative h 91.6 0.19 6.4E-06 65.2 7.0 65 213-278 183-247 (444)
271 2qby_A CDC6 homolog 1, cell di 91.6 0.16 5.3E-06 64.0 6.2 38 225-262 43-83 (386)
272 2q6t_A DNAB replication FORK h 91.6 0.29 9.8E-06 63.6 8.7 64 214-278 187-251 (444)
273 2vgx_A Chaperone SYCD; alterna 91.5 0.45 1.6E-05 51.5 9.0 86 1695-1810 29-114 (148)
274 3tbk_A RIG-I helicase domain; 91.5 0.29 9.9E-06 64.8 8.9 72 1067-1163 2-76 (555)
275 4a4z_A Antiviral helicase SKI2 91.5 0.18 6.1E-06 71.8 7.1 68 1065-1162 35-105 (997)
276 2j0s_A ATP-dependent RNA helic 91.4 0.29 9.9E-06 62.3 8.5 83 1045-1162 42-128 (410)
277 2vhj_A Ntpase P4, P4; non- hyd 91.4 0.057 1.9E-06 66.4 1.7 24 227-250 123-146 (331)
278 2whx_A Serine protease/ntpase/ 91.4 0.14 4.7E-06 69.3 5.6 51 226-276 185-236 (618)
279 1xjc_A MOBB protein homolog; s 91.4 0.18 6.2E-06 56.5 5.7 40 228-267 5-44 (169)
280 2r62_A Cell division protease 91.4 0.06 2E-06 64.7 1.9 22 229-250 46-67 (268)
281 3q49_B STIP1 homology and U bo 91.3 0.53 1.8E-05 49.0 9.1 96 1670-1810 7-102 (137)
282 2xcb_A PCRH, regulatory protei 91.3 0.49 1.7E-05 50.5 8.9 86 1695-1810 26-111 (142)
283 2j0s_A ATP-dependent RNA helic 91.3 0.17 5.9E-06 64.4 6.2 61 214-278 65-128 (410)
284 2chq_A Replication factor C sm 91.3 0.13 4.6E-06 62.9 5.0 42 212-254 21-65 (319)
285 2qfc_A PLCR protein; TPR, HTH, 91.2 2.8 9.7E-05 50.3 16.7 23 1692-1714 120-142 (293)
286 1u0j_A DNA replication protein 91.2 0.17 5.9E-06 60.6 5.6 51 200-250 71-127 (267)
287 1lv7_A FTSH; alpha/beta domain 91.2 0.092 3.1E-06 62.7 3.3 24 228-251 46-69 (257)
288 3cf0_A Transitional endoplasmi 91.2 0.093 3.2E-06 64.5 3.4 33 227-262 49-81 (301)
289 1gm5_A RECG; helicase, replica 91.2 0.29 1E-05 67.5 8.6 68 1066-1163 365-441 (780)
290 2lni_A Stress-induced-phosphop 91.2 0.34 1.2E-05 49.8 7.3 96 1670-1810 14-109 (133)
291 2r44_A Uncharacterized protein 91.1 0.068 2.3E-06 66.4 2.1 41 211-251 30-70 (331)
292 2xxa_A Signal recognition part 91.1 0.16 5.4E-06 65.6 5.5 44 227-270 100-147 (433)
293 3hws_A ATP-dependent CLP prote 91.1 0.21 7.1E-06 63.0 6.6 35 227-264 51-85 (363)
294 3qou_A Protein YBBN; thioredox 91.1 2.1 7.1E-05 51.7 15.3 58 1747-1812 121-178 (287)
295 1zu4_A FTSY; GTPase, signal re 91.1 0.16 5.6E-06 62.9 5.5 37 227-263 105-141 (320)
296 1um8_A ATP-dependent CLP prote 91.1 0.12 4E-06 65.6 4.2 33 227-262 72-104 (376)
297 2xgj_A ATP-dependent RNA helic 91.1 0.28 9.5E-06 69.9 8.4 69 1065-1163 82-153 (1010)
298 3d8b_A Fidgetin-like protein 1 91.1 0.13 4.3E-06 64.9 4.5 35 227-264 117-151 (357)
299 3pxg_A Negative regulator of g 91.1 0.17 5.9E-06 66.1 6.0 41 212-253 184-227 (468)
300 1jr3_A DNA polymerase III subu 91.1 0.17 5.7E-06 63.7 5.6 33 220-252 31-63 (373)
301 2i4i_A ATP-dependent RNA helic 91.1 0.38 1.3E-05 61.3 9.1 100 1046-1162 21-124 (417)
302 3tbk_A RIG-I helicase domain; 91.0 0.29 9.8E-06 64.8 8.2 63 215-281 11-78 (555)
303 3fmp_B ATP-dependent RNA helic 91.0 0.47 1.6E-05 62.0 10.0 86 1045-1164 97-187 (479)
304 1fuu_A Yeast initiation factor 91.0 0.24 8.3E-06 62.5 7.1 84 1045-1162 26-112 (394)
305 1sxj_B Activator 1 37 kDa subu 91.0 0.18 6E-06 62.0 5.6 37 217-254 33-69 (323)
306 1hqc_A RUVB; extended AAA-ATPa 91.0 0.2 6.8E-06 61.8 6.1 33 226-261 37-69 (324)
307 2va8_A SSO2462, SKI2-type heli 91.0 0.37 1.3E-05 66.4 9.4 80 1046-1162 14-98 (715)
308 4a2p_A RIG-I, retinoic acid in 91.0 0.27 9.3E-06 65.2 7.8 63 214-280 13-80 (556)
309 2wv9_A Flavivirin protease NS2 90.9 0.16 5.5E-06 69.2 5.6 51 226-276 240-291 (673)
310 3ug7_A Arsenical pump-driving 90.9 0.26 8.7E-06 61.9 7.0 47 218-264 17-63 (349)
311 3e4b_A ALGK; tetratricopeptide 90.8 2 6.7E-05 55.6 15.6 22 1693-1714 9-30 (452)
312 2eyq_A TRCF, transcription-rep 90.8 0.3 1E-05 70.6 8.5 66 214-279 609-676 (1151)
313 2db3_A ATP-dependent RNA helic 90.8 0.39 1.3E-05 62.0 8.9 89 1045-1162 61-152 (434)
314 3eiq_A Eukaryotic initiation f 90.8 0.29 9.9E-06 62.3 7.5 84 1045-1162 45-131 (414)
315 1elr_A TPR2A-domain of HOP; HO 90.8 0.89 3E-05 46.2 10.0 54 1693-1768 10-63 (131)
316 4a2p_A RIG-I, retinoic acid in 90.7 0.34 1.2E-05 64.2 8.5 73 1066-1163 4-79 (556)
317 1in4_A RUVB, holliday junction 90.7 0.12 4.2E-06 64.4 3.9 25 227-251 51-75 (334)
318 3rjv_A Putative SEL1 repeat pr 90.7 2.5 8.5E-05 48.4 14.8 112 1694-1811 25-155 (212)
319 2zan_A Vacuolar protein sortin 90.7 0.13 4.5E-06 66.7 4.2 36 227-264 167-202 (444)
320 1ojl_A Transcriptional regulat 90.7 0.15 5.1E-06 62.8 4.6 39 225-263 23-63 (304)
321 1elw_A TPR1-domain of HOP; HOP 90.7 0.56 1.9E-05 46.8 8.2 87 1694-1810 11-97 (118)
322 3pfi_A Holliday junction ATP-d 90.6 0.17 5.8E-06 62.9 5.1 25 226-250 54-78 (338)
323 2z43_A DNA repair and recombin 90.6 0.16 5.6E-06 63.0 4.8 53 214-266 93-152 (324)
324 2fwr_A DNA repair protein RAD2 90.6 0.38 1.3E-05 62.7 8.6 63 1066-1161 90-155 (472)
325 1fuu_A Yeast initiation factor 90.6 0.17 5.7E-06 63.9 5.1 62 214-279 49-113 (394)
326 4b4t_I 26S protease regulatory 90.6 0.11 3.9E-06 66.0 3.4 35 227-264 216-250 (437)
327 2fo7_A Synthetic consensus TPR 90.5 3.3 0.00011 41.8 14.1 83 1746-1836 4-94 (136)
328 1j8m_F SRP54, signal recogniti 90.5 0.19 6.7E-06 61.5 5.3 37 227-263 98-134 (297)
329 1p5q_A FKBP52, FK506-binding p 90.5 0.7 2.4E-05 57.4 10.4 98 1695-1811 155-256 (336)
330 3zq6_A Putative arsenical pump 90.4 0.16 5.6E-06 63.0 4.6 45 220-264 6-51 (324)
331 2c9o_A RUVB-like 1; hexameric 90.3 0.2 7E-06 65.2 5.6 36 227-263 63-98 (456)
332 1ixz_A ATP-dependent metallopr 90.3 0.11 3.8E-06 61.9 2.8 21 230-250 52-72 (254)
333 2fwr_A DNA repair protein RAD2 90.3 0.26 8.9E-06 64.3 6.5 57 214-277 99-155 (472)
334 2j9r_A Thymidine kinase; TK1, 90.2 0.26 8.9E-06 57.2 5.7 38 227-264 28-65 (214)
335 4ddu_A Reverse gyrase; topoiso 90.2 0.4 1.4E-05 68.9 8.8 67 1066-1162 75-144 (1104)
336 4b4t_H 26S protease regulatory 90.1 0.12 4E-06 66.5 2.9 36 227-265 243-278 (467)
337 3h1t_A Type I site-specific re 90.1 0.18 6.1E-06 67.9 5.0 59 214-272 184-252 (590)
338 2oca_A DAR protein, ATP-depend 90.1 0.29 9.9E-06 64.5 6.9 67 1067-1162 111-180 (510)
339 1a17_A Serine/threonine protei 90.1 1.3 4.5E-05 47.3 11.1 86 1695-1810 21-106 (166)
340 1sxj_A Activator 1 95 kDa subu 90.0 0.19 6.6E-06 66.5 5.0 35 227-264 77-111 (516)
341 2i4i_A ATP-dependent RNA helic 89.9 0.34 1.2E-05 61.8 7.1 62 214-279 43-125 (417)
342 3l9o_A ATP-dependent RNA helic 89.9 0.41 1.4E-05 68.8 8.6 53 227-279 199-251 (1108)
343 3qou_A Protein YBBN; thioredox 89.9 0.82 2.8E-05 55.3 10.2 19 1695-1713 125-143 (287)
344 2x8a_A Nuclear valosin-contain 89.9 0.12 4.3E-06 62.5 2.8 20 230-249 47-66 (274)
345 3vfd_A Spastin; ATPase, microt 89.9 0.39 1.3E-05 61.1 7.6 36 227-265 148-183 (389)
346 3qky_A Outer membrane assembly 89.9 0.65 2.2E-05 54.8 9.0 21 1694-1714 59-79 (261)
347 2zj8_A DNA helicase, putative 89.8 0.33 1.1E-05 67.0 7.3 65 1069-1162 23-91 (720)
348 4a4z_A Antiviral helicase SKI2 89.8 0.31 1.1E-05 69.4 7.1 61 214-278 45-105 (997)
349 1nks_A Adenylate kinase; therm 89.8 0.31 1E-05 55.0 5.8 33 229-261 3-35 (194)
350 1g8p_A Magnesium-chelatase 38 89.5 0.096 3.3E-06 65.3 1.5 23 229-251 47-69 (350)
351 1v5w_A DMC1, meiotic recombina 89.5 0.22 7.7E-06 62.3 4.8 53 214-266 108-167 (343)
352 3mv2_B Coatomer subunit epsilo 89.5 5.2 0.00018 49.1 16.6 123 1691-1838 104-238 (310)
353 3i5x_A ATP-dependent RNA helic 89.5 0.48 1.7E-05 63.2 8.3 88 1046-1163 78-170 (563)
354 3n71_A Histone lysine methyltr 89.4 0.86 2.9E-05 59.8 10.4 94 1697-1810 319-418 (490)
355 2r5s_A Uncharacterized protein 89.4 1.3 4.6E-05 48.8 10.7 22 1694-1715 13-34 (176)
356 2yvu_A Probable adenylyl-sulfa 89.4 0.3 1E-05 55.2 5.3 36 227-262 13-48 (186)
357 3nbx_X ATPase RAVA; AAA+ ATPas 89.4 0.13 4.6E-06 67.4 2.7 39 211-249 25-63 (500)
358 2yhc_A BAMD, UPF0169 lipoprote 89.3 6.1 0.00021 45.4 16.7 23 1788-1810 44-66 (225)
359 2r5s_A Uncharacterized protein 89.3 2.5 8.5E-05 46.6 12.8 58 1747-1812 10-67 (176)
360 2z0h_A DTMP kinase, thymidylat 89.3 0.31 1.1E-05 55.3 5.4 40 229-268 2-42 (197)
361 2wpv_A GET4, UPF0363 protein Y 89.2 18 0.00063 44.2 21.1 162 1697-1884 23-213 (312)
362 1yrb_A ATP(GTP)binding protein 89.2 0.25 8.6E-06 58.9 4.7 35 227-262 14-48 (262)
363 1n0w_A DNA repair protein RAD5 89.1 0.24 8.3E-06 58.1 4.5 51 215-265 11-68 (243)
364 3qww_A SET and MYND domain-con 89.1 0.51 1.8E-05 60.9 7.8 94 1697-1810 308-407 (433)
365 1sxj_E Activator 1 40 kDa subu 89.1 0.2 7E-06 62.5 4.0 40 212-252 18-61 (354)
366 1hxi_A PEX5, peroxisome target 89.1 0.53 1.8E-05 49.1 6.6 84 1697-1810 27-110 (121)
367 2vl7_A XPD; helicase, unknown 89.1 0.42 1.4E-05 63.6 7.2 61 213-276 12-72 (540)
368 3a4m_A L-seryl-tRNA(SEC) kinas 89.0 0.32 1.1E-05 58.4 5.5 35 228-262 5-39 (260)
369 3sqw_A ATP-dependent RNA helic 89.0 0.63 2.1E-05 62.5 8.9 66 213-280 48-120 (579)
370 3n71_A Histone lysine methyltr 89.0 2.5 8.5E-05 55.4 14.3 57 1748-1810 314-376 (490)
371 1iy2_A ATP-dependent metallopr 88.9 0.16 5.6E-06 61.4 2.8 21 230-250 76-96 (278)
372 3fmo_B ATP-dependent RNA helic 88.9 0.57 1.9E-05 57.4 7.7 52 228-279 132-186 (300)
373 2ehv_A Hypothetical protein PH 88.9 0.32 1.1E-05 57.3 5.3 39 226-264 29-68 (251)
374 3o8b_A HCV NS3 protease/helica 88.9 0.41 1.4E-05 64.6 6.9 51 226-279 231-281 (666)
375 3i5x_A ATP-dependent RNA helic 88.8 0.46 1.6E-05 63.4 7.4 66 214-281 100-172 (563)
376 2xgj_A ATP-dependent RNA helic 88.8 0.49 1.7E-05 67.4 8.0 62 214-279 92-153 (1010)
377 3sqw_A ATP-dependent RNA helic 88.7 0.59 2E-05 62.7 8.3 87 1047-1163 28-119 (579)
378 3fmp_B ATP-dependent RNA helic 88.6 0.35 1.2E-05 63.2 5.9 64 214-279 120-186 (479)
379 2vsy_A XCC0866; transferase, g 88.5 3.8 0.00013 54.4 16.0 19 1865-1883 97-115 (568)
380 2vyi_A SGTA protein; chaperone 88.4 2 6.7E-05 43.5 10.4 87 1694-1810 19-105 (131)
381 2vsy_A XCC0866; transferase, g 88.4 2 6.9E-05 57.0 13.2 111 1697-1837 33-154 (568)
382 2fbn_A 70 kDa peptidylprolyl i 88.4 0.86 3E-05 51.3 8.3 100 1695-1810 46-147 (198)
383 2p6r_A Afuhel308 helicase; pro 88.4 0.35 1.2E-05 66.5 5.9 64 1069-1162 25-91 (702)
384 1w4r_A Thymidine kinase; type 88.3 0.4 1.4E-05 54.8 5.3 38 227-264 20-57 (195)
385 4gl2_A Interferon-induced heli 88.3 0.33 1.1E-05 66.6 5.7 63 213-279 12-81 (699)
386 4a2q_A RIG-I, retinoic acid in 88.3 0.55 1.9E-05 65.6 7.8 63 214-280 254-321 (797)
387 1np6_A Molybdopterin-guanine d 88.2 0.43 1.5E-05 53.8 5.5 36 228-263 7-42 (174)
388 2ooe_A Cleavage stimulation fa 88.1 3.5 0.00012 54.2 15.1 58 1746-1811 324-382 (530)
389 3cmu_A Protein RECA, recombina 88.0 0.33 1.1E-05 72.2 5.6 40 227-266 1427-1466(2050)
390 4ddu_A Reverse gyrase; topoiso 88.0 0.42 1.4E-05 68.7 6.5 51 228-278 94-144 (1104)
391 2eyq_A TRCF, transcription-rep 87.9 0.63 2.2E-05 67.3 8.2 68 1065-1162 599-675 (1151)
392 2pbr_A DTMP kinase, thymidylat 87.9 0.44 1.5E-05 53.8 5.4 33 229-261 2-34 (195)
393 1gvn_B Zeta; postsegregational 87.8 0.34 1.2E-05 59.0 4.7 25 227-251 33-57 (287)
394 3lw7_A Adenylate kinase relate 87.8 0.34 1.2E-05 53.4 4.3 28 229-260 3-30 (179)
395 3rc3_A ATP-dependent RNA helic 87.6 0.58 2E-05 63.6 7.2 47 227-277 155-201 (677)
396 3kb2_A SPBC2 prophage-derived 87.5 0.31 1.1E-05 53.8 3.8 23 229-251 3-25 (173)
397 2xev_A YBGF; tetratricopeptide 87.5 0.87 3E-05 46.8 7.0 92 1693-1809 8-100 (129)
398 2i1q_A DNA repair and recombin 87.5 0.34 1.2E-05 60.0 4.5 61 214-274 84-162 (322)
399 1w5s_A Origin recognition comp 87.5 0.37 1.3E-05 61.4 5.0 28 226-253 49-78 (412)
400 4edh_A DTMP kinase, thymidylat 87.4 0.72 2.5E-05 53.7 6.9 41 228-268 7-48 (213)
401 1qvr_A CLPB protein; coiled co 87.4 0.55 1.9E-05 66.0 7.0 51 212-263 174-234 (854)
402 1na0_A Designed protein CTPR3; 87.3 2.6 8.8E-05 42.2 10.4 86 1695-1810 17-102 (125)
403 1g5t_A COB(I)alamin adenosyltr 87.3 0.52 1.8E-05 54.0 5.4 40 226-265 27-66 (196)
404 1qhx_A CPT, protein (chloramph 87.3 0.28 9.6E-06 54.8 3.3 24 228-251 4-27 (178)
405 3u3w_A Transcriptional activat 87.1 6 0.00021 47.4 15.2 22 1862-1883 199-220 (293)
406 1ly1_A Polynucleotide kinase; 87.0 0.29 9.9E-06 54.6 3.2 22 228-249 3-24 (181)
407 4gl2_A Interferon-induced heli 87.0 0.53 1.8E-05 64.5 6.5 74 1066-1163 4-81 (699)
408 3hu3_A Transitional endoplasmi 87.0 0.32 1.1E-05 63.7 4.0 33 227-262 238-270 (489)
409 1ihu_A Arsenical pump-driving 87.0 0.47 1.6E-05 63.8 5.8 38 227-264 8-45 (589)
410 1wp9_A ATP-dependent RNA helic 86.9 0.94 3.2E-05 58.3 8.4 67 1068-1163 8-76 (494)
411 2ykg_A Probable ATP-dependent 86.9 0.98 3.3E-05 61.9 9.0 63 213-279 18-85 (696)
412 4g26_A Pentatricopeptide repea 86.7 5.6 0.00019 52.3 15.7 25 1814-1838 108-132 (501)
413 1ihg_A Cyclophilin 40; ppiase 86.7 1.2 4.1E-05 56.2 9.0 100 1697-1810 233-332 (370)
414 3e70_C DPA, signal recognition 86.7 0.52 1.8E-05 58.5 5.5 38 225-262 127-164 (328)
415 3qwp_A SET and MYND domain-con 86.7 1.4 4.9E-05 56.7 9.8 94 1697-1810 297-396 (429)
416 2h6f_A Protein farnesyltransfe 86.6 3.3 0.00011 52.5 12.9 17 1697-1713 107-123 (382)
417 2ce7_A Cell division protein F 86.6 0.3 1E-05 63.6 3.4 33 228-263 50-82 (476)
418 1kht_A Adenylate kinase; phosp 86.6 0.39 1.3E-05 54.1 3.9 28 228-255 4-31 (192)
419 1rz3_A Hypothetical protein rb 86.4 0.85 2.9E-05 52.3 6.7 47 216-262 10-57 (201)
420 2plr_A DTMP kinase, probable t 86.4 0.63 2.2E-05 53.3 5.7 31 228-259 5-35 (213)
421 1gku_B Reverse gyrase, TOP-RG; 86.4 0.55 1.9E-05 67.3 6.3 53 227-279 71-123 (1054)
422 3trf_A Shikimate kinase, SK; a 86.3 0.41 1.4E-05 53.8 4.0 24 228-251 6-29 (185)
423 2ffh_A Protein (FFH); SRP54, s 86.3 0.52 1.8E-05 60.5 5.3 37 227-263 98-134 (425)
424 3bfv_A CAPA1, CAPB2, membrane 86.3 0.6 2.1E-05 56.4 5.6 36 227-262 82-118 (271)
425 4g26_A Pentatricopeptide repea 86.2 1.7 5.8E-05 57.2 10.3 134 1700-1839 39-203 (501)
426 3crv_A XPD/RAD3 related DNA he 86.2 0.7 2.4E-05 61.6 6.8 61 213-276 8-68 (551)
427 1nn5_A Similar to deoxythymidy 86.2 0.6 2.1E-05 53.7 5.4 35 227-261 9-43 (215)
428 3pxi_A Negative regulator of g 86.2 0.45 1.6E-05 66.0 5.1 40 211-251 183-225 (758)
429 2db3_A ATP-dependent RNA helic 86.2 0.8 2.7E-05 59.1 7.1 52 228-279 94-153 (434)
430 3fho_A ATP-dependent RNA helic 86.2 0.49 1.7E-05 62.5 5.2 67 1069-1162 141-212 (508)
431 3dmq_A RNA polymerase-associat 86.1 0.89 3E-05 64.7 8.1 62 213-277 158-221 (968)
432 1ls1_A Signal recognition part 86.1 0.59 2E-05 57.2 5.5 37 227-263 98-134 (295)
433 2p67_A LAO/AO transport system 86.1 0.83 2.8E-05 57.1 6.9 48 216-263 45-92 (341)
434 3e2i_A Thymidine kinase; Zn-bi 86.1 0.63 2.2E-05 53.9 5.3 40 226-265 27-66 (219)
435 1svm_A Large T antigen; AAA+ f 86.0 0.62 2.1E-05 58.9 5.8 36 215-250 157-192 (377)
436 2rhm_A Putative kinase; P-loop 85.9 0.38 1.3E-05 54.3 3.5 25 227-251 5-29 (193)
437 2fna_A Conserved hypothetical 85.8 1.6 5.4E-05 54.0 9.3 39 211-251 16-54 (357)
438 3pxi_A Negative regulator of g 85.7 0.48 1.6E-05 65.7 5.0 34 229-262 523-556 (758)
439 2kck_A TPR repeat; tetratricop 85.7 0.62 2.1E-05 46.0 4.5 90 1693-1810 12-102 (112)
440 3iij_A Coilin-interacting nucl 85.6 0.46 1.6E-05 53.3 3.9 25 227-251 11-35 (180)
441 2qm8_A GTPase/ATPase; G protei 85.6 0.97 3.3E-05 56.4 7.2 49 215-263 43-91 (337)
442 1rj9_A FTSY, signal recognitio 85.6 0.66 2.3E-05 57.0 5.5 37 227-263 102-138 (304)
443 4a2w_A RIG-I, retinoic acid in 85.6 0.68 2.3E-05 65.7 6.5 64 213-280 253-321 (936)
444 2qx5_A Nucleoporin NIC96; mRNA 85.5 12 0.00041 50.5 17.9 36 1788-1823 446-481 (661)
445 3gyz_A Chaperone protein IPGC; 85.4 4.9 0.00017 43.8 11.9 94 1734-1836 28-129 (151)
446 3co5_A Putative two-component 85.4 0.42 1.4E-05 51.8 3.3 21 1079-1099 25-45 (143)
447 2zpa_A Uncharacterized protein 85.4 0.44 1.5E-05 64.0 4.1 78 578-666 255-334 (671)
448 1zp6_A Hypothetical protein AT 85.4 0.36 1.2E-05 54.5 2.9 22 227-248 9-30 (191)
449 2p5t_B PEZT; postsegregational 85.4 0.45 1.5E-05 56.8 3.8 25 227-251 32-56 (253)
450 3n70_A Transport activator; si 85.3 0.41 1.4E-05 52.0 3.1 22 1079-1100 22-43 (145)
451 1g41_A Heat shock protein HSLU 85.3 0.48 1.7E-05 61.0 4.2 32 228-262 51-82 (444)
452 1kag_A SKI, shikimate kinase I 85.2 0.42 1.4E-05 53.1 3.3 22 228-249 5-26 (173)
453 1hh8_A P67PHOX, NCF-2, neutrop 85.2 6.1 0.00021 44.3 13.2 80 1747-1837 10-97 (213)
454 2c2l_A CHIP, carboxy terminus 85.2 2.3 7.8E-05 51.2 10.0 85 1696-1810 13-97 (281)
455 1kt0_A FKBP51, 51 kDa FK506-bi 85.1 1 3.6E-05 58.4 7.4 99 1695-1810 276-376 (457)
456 2ze6_A Isopentenyl transferase 85.1 0.46 1.6E-05 56.8 3.7 23 229-251 3-25 (253)
457 4gcn_A Protein STI-1; structur 85.0 8.4 0.00029 40.1 13.2 56 1745-1808 10-65 (127)
458 1via_A Shikimate kinase; struc 85.0 0.44 1.5E-05 53.2 3.3 23 229-251 6-28 (175)
459 1a17_A Serine/threonine protei 84.9 6 0.0002 42.0 12.3 84 1745-1836 15-106 (166)
460 3lv8_A DTMP kinase, thymidylat 84.9 1.1 3.8E-05 52.9 6.9 42 227-268 27-70 (236)
461 1e9r_A Conjugal transfer prote 84.9 0.65 2.2E-05 60.0 5.3 42 227-268 53-94 (437)
462 4a2q_A RIG-I, retinoic acid in 84.8 1.3 4.4E-05 61.8 8.6 72 1067-1163 246-320 (797)
463 2ykg_A Probable ATP-dependent 84.8 1.4 4.8E-05 60.3 8.9 70 1068-1162 12-84 (696)
464 3b9q_A Chloroplast SRP recepto 84.8 0.71 2.4E-05 56.7 5.3 37 227-263 100-136 (302)
465 4f3v_A ESX-1 secretion system 84.8 4 0.00014 49.4 11.7 113 1694-1835 109-232 (282)
466 3cio_A ETK, tyrosine-protein k 84.7 0.73 2.5E-05 56.5 5.3 37 226-262 103-140 (299)
467 2h6f_A Protein farnesyltransfe 84.7 5.7 0.00019 50.3 13.8 82 1747-1836 135-225 (382)
468 2z83_A Helicase/nucleoside tri 84.7 0.46 1.6E-05 61.9 3.7 60 1072-1160 12-71 (459)
469 3v9p_A DTMP kinase, thymidylat 84.6 0.99 3.4E-05 53.0 6.2 42 227-268 25-71 (227)
470 3fb4_A Adenylate kinase; psych 84.6 0.46 1.6E-05 54.9 3.4 22 230-251 3-24 (216)
471 3c8u_A Fructokinase; YP_612366 84.6 0.98 3.3E-05 52.0 6.1 38 225-262 20-57 (208)
472 1p9r_A General secretion pathw 84.5 0.79 2.7E-05 58.8 5.8 46 213-260 155-200 (418)
473 1tf7_A KAIC; homohexamer, hexa 84.5 0.89 3.1E-05 60.2 6.5 50 217-266 270-320 (525)
474 4ag6_A VIRB4 ATPase, type IV s 84.5 0.74 2.5E-05 58.6 5.5 42 227-268 35-76 (392)
475 2wwf_A Thymidilate kinase, put 84.4 0.83 2.8E-05 52.4 5.4 34 227-260 10-43 (212)
476 3iqw_A Tail-anchored protein t 84.4 0.69 2.4E-05 57.6 5.0 39 226-264 15-53 (334)
477 2dhr_A FTSH; AAA+ protein, hex 84.4 0.38 1.3E-05 63.0 2.8 31 230-263 67-97 (499)
478 2orv_A Thymidine kinase; TP4A 84.3 0.85 2.9E-05 53.4 5.3 38 227-264 19-56 (234)
479 3vaa_A Shikimate kinase, SK; s 84.3 0.6 2E-05 53.4 4.1 25 227-251 25-49 (199)
480 2yhs_A FTSY, cell division pro 84.1 1.1 3.9E-05 58.1 6.9 36 227-262 293-328 (503)
481 3k1j_A LON protease, ATP-depen 84.1 0.52 1.8E-05 63.6 4.0 41 211-251 44-84 (604)
482 1r6b_X CLPA protein; AAA+, N-t 84.0 0.68 2.3E-05 64.3 5.2 39 212-251 190-231 (758)
483 4a15_A XPD helicase, ATP-depen 84.0 1.2 4.3E-05 60.0 7.6 68 1067-1163 1-75 (620)
484 3dl0_A Adenylate kinase; phosp 83.9 0.42 1.5E-05 55.3 2.7 21 230-250 3-23 (216)
485 2iyv_A Shikimate kinase, SK; t 83.9 0.6 2E-05 52.5 3.8 24 228-251 3-26 (184)
486 1tev_A UMP-CMP kinase; ploop, 83.9 0.57 2E-05 52.8 3.7 24 228-251 4-27 (196)
487 3jvv_A Twitching mobility prot 83.7 0.77 2.6E-05 57.7 5.1 45 215-261 113-158 (356)
488 3kjh_A CO dehydrogenase/acetyl 83.6 0.51 1.7E-05 55.6 3.2 34 229-263 3-36 (254)
489 3cmw_A Protein RECA, recombina 83.6 0.78 2.7E-05 67.6 5.7 41 227-267 383-423 (1706)
490 3t61_A Gluconokinase; PSI-biol 83.6 0.63 2.2E-05 53.2 3.9 25 227-251 18-42 (202)
491 2c95_A Adenylate kinase 1; tra 83.5 0.62 2.1E-05 52.7 3.8 25 227-251 9-33 (196)
492 3m6a_A ATP-dependent protease 83.5 0.57 2E-05 62.3 4.0 26 226-251 107-132 (543)
493 3cm0_A Adenylate kinase; ATP-b 83.5 0.62 2.1E-05 52.3 3.7 23 229-251 6-28 (186)
494 2woo_A ATPase GET3; tail-ancho 83.5 0.9 3.1E-05 56.5 5.5 40 225-264 17-56 (329)
495 1knq_A Gluconate kinase; ALFA/ 83.4 0.71 2.4E-05 51.4 4.1 25 227-251 8-32 (175)
496 4tmk_A Protein (thymidylate ki 83.3 1.5 5.2E-05 50.9 7.0 47 228-274 4-52 (213)
497 2pez_A Bifunctional 3'-phospho 83.3 0.99 3.4E-05 50.5 5.3 35 227-261 5-39 (179)
498 2og2_A Putative signal recogni 83.3 0.89 3E-05 57.1 5.4 37 227-263 157-193 (359)
499 4eun_A Thermoresistant glucoki 83.3 0.67 2.3E-05 53.1 3.9 25 227-251 29-53 (200)
500 2cdn_A Adenylate kinase; phosp 83.2 0.76 2.6E-05 52.5 4.4 25 227-251 20-44 (201)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=2.1e-65 Score=696.86 Aligned_cols=574 Identities=25% Similarity=0.325 Sum_probs=395.4
Q ss_pred CChhHHHhhchhhHHHHHHHHHHhhhhcccCCCceE-------EE--EEe--ccCCCCCceEEEEEcccccccCCCCCCc
Q 000053 54 RSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQ-------VV--AFE--DSKPYGSMLYDVKVDCWRNRFSNLGREP 122 (2576)
Q Consensus 54 ~s~~~Y~~sf~~~LlEEtra~l~Ssl~~is~ap~~~-------i~--~~~--~~~~~~~~~y~i~~~~~~~~~~~~~~~~ 122 (2576)
.|+++|++.|..+|-.|-.+++...-+.+...+..+ +. .+. ..+..|..++.+..+..... ..--.
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~---~~l~~ 78 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSA---AALPS 78 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC------CCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCC---CCCcc
Confidence 368999999999999998888766555444444211 11 111 11234555666665433211 11113
Q ss_pred ccCCCCCEEEEccCCCCCCccccccCceeEEEEEeeeccCCcccCCCCceeEEEeeccccccc---cCcceEEEEeeccc
Q 000053 123 YKTLPGDILVLADAKPETASDLQRVGRMWTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDV---SKKSLFVIFLINRT 199 (2576)
Q Consensus 123 y~p~~GDii~lt~~kP~~~~dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~sk~i~~~~---~~~~~~~~~L~N~~ 199 (2576)
....+||+|++++..|.. ....-|.|.++..+ .+.|.+........ ....+...++.|.+
T Consensus 79 ~~~~~Gd~v~~~~~~~~~--------~~~~~g~v~~~~~~---------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (646)
T 4b3f_X 79 NSFTSGDIVGLYDAANEG--------SQLATGILTRVTQK---------SVTVAFDESHDFQLSLDRENSYRLLKLANDV 141 (646)
T ss_dssp CCCCTTCEEEEEETTTTS--------CCCEEEEEEEEETT---------EEEEECC-------CCCSSCCEEEEEECCHH
T ss_pred CCCCCCCEEEEEecCCCC--------CceEEEEEEEEeCC---------EEEEEECCccccccccCCCCcEEEEEeccch
Confidence 467899999999876643 33456889888653 56676654332221 13456678899999
Q ss_pred chhhHhhhccc------CCCHHHHHHHH------------------------------hcCCCCCeEEEEcCCCCChhHH
Q 000053 200 SNRRIWNSLHM------KGNLKIIKELL------------------------------CTDSGATVQLIWGPPGTGKTKT 243 (2576)
Q Consensus 200 t~~ri~~~l~~------~~~~~~i~~vl------------------------------~~~~~~~v~LIwGPPGTGKTkt 243 (2576)
||.|++.+|.. .+...+++-++ ..-+.+++.|||||||||||+|
T Consensus 142 ~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t 221 (646)
T 4b3f_X 142 TYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT 221 (646)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCCCCCCCCSSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCccccCcccccCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH
Confidence 99999999842 12233333332 2111267999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHHHhhhhhccccccccccccEEEccCcccccccccchhhhHHHHHH
Q 000053 244 VSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVK 323 (2576)
Q Consensus 244 Is~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv~es~~~~~~~~~~~~lgdillfGn~~rm~id~~l~~v~Ld~Rv~ 323 (2576)
+++++..|++.|.+||+|||||.|||++++||... ..+++++|++.++. +.+....++....
T Consensus 222 i~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~----------------~~~ilRlG~~~r~~--~~~~~~~l~~~~~ 283 (646)
T 4b3f_X 222 VVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC----------------KQRILRLGHPARLL--ESIQQHSLDAVLA 283 (646)
T ss_dssp HHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT----------------TCCEEECSCCSSCC--HHHHTTBHHHHHT
T ss_pred HHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc----------------CCceEEecchhhhh--hhhhhhhHHHHHh
Confidence 99999999999999999999999999999998632 13589999988762 1222222221111
Q ss_pred HHhhhccCCCCcchhhhhhHHHHHhhHHHHHHHHHhhhhccccccccchhhhhhccccCCccccccchhhHHHhhhhhhc
Q 000053 324 RLADCFAPLTGWSHCFASMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCI 403 (2576)
Q Consensus 324 ~L~~~f~~~~gw~~~L~sli~lLen~~~~y~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 403 (2576)
+... .. ....+++.+
T Consensus 284 ~~~~--------~~------------------------------------------------------~~~~~~~~~--- 298 (646)
T 4b3f_X 284 RSDS--------AQ------------------------------------------------------IVADIRKDI--- 298 (646)
T ss_dssp TTTC--------SS------------------------------------------------------THHHHHHHH---
T ss_pred hchH--------HH------------------------------------------------------HHHHHHHHH---
Confidence 0000 00 000000000
Q ss_pred ccccchhhhcccccccccccccchhHHHHHhhhhcccchhhhhhhhhccCCCccccccchhhHHHHHHHHHHHHHHHhhh
Q 000053 404 INGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMATLISLLDSFETLLFE 483 (2576)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~sf~~f~~~~~~~~~~~l~~~~~~l~~~lp~~~~s~~~~~~~~~l~~~L~~~~~ll~~ 483 (2576)
........ .......
T Consensus 299 ---------------------------------~~~~~~~~-----------~~~~~~~--------------------- 313 (646)
T 4b3f_X 299 ---------------------------------DQVFVKNK-----------KTQDKRE--------------------- 313 (646)
T ss_dssp ---------------------------------TTSSTTTT-----------C---------------------------
T ss_pred ---------------------------------HHHHHhhh-----------hhhhHHH---------------------
Confidence 00000000 0000000
Q ss_pred cccchHHHHHHhcccccccchhhHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCChhhhhHHHHHHHHHHHhcCCcEEEE
Q 000053 484 DNLVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDLLKRFCLKRASLFFS 563 (2576)
Q Consensus 484 ~~~~~eel~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~lk~L~~~~~~l~lp~~~~k~~~~~~i~~~~l~~a~VI~~ 563 (2576)
+......++.+...++. .++......+..+++|++
T Consensus 314 ----------------------------------~~~~~~~~~~l~~~l~~-----------~~~~~~~~~l~~~~vv~~ 348 (646)
T 4b3f_X 314 ----------------------------------KSNFRNEIKLLRKELKE-----------REEAAMLESLTSANVVLA 348 (646)
T ss_dssp ----------------------------------CCSSHHHHHHHHHHHHH-----------HHHHHHHHHHHHCSEEEE
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhcceeee
Confidence 00000000000000000 011122334678999999
Q ss_pred ccccchhh---hhccCCCCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhhccccHHHHHhh
Q 000053 564 TASSSYML---HSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSH 640 (2576)
Q Consensus 564 T~sss~~l---~~~~~~~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~ 640 (2576)
|++++... ..+....||+||||||+|++|+++++|+. +++++||||||+||||++.+..+...+++.|+|+|+..
T Consensus 349 t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~ 426 (646)
T 4b3f_X 349 TNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE 426 (646)
T ss_dssp ETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHH
T ss_pred ehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhhhhccccchHHHHHHH
Confidence 98875432 33455679999999999999999999985 46899999999999999999888899999999999986
Q ss_pred c--cCCccccccccccCcccccccccccccCcccCCcccccccccccc---CCCCCCCCcEEEEccCC----cccccccc
Q 000053 641 L--RHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRF---LPGPMYGPYSFINVFGG----REEFIEHS 711 (2576)
Q Consensus 641 ~--g~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~---~~~~~~~~~~fidv~~g----~e~~~~~S 711 (2576)
. +.+.++|++||||||+|+.|+|..||+|+|.+++++..+...... .......|+.|+|+.+. .++..+.|
T Consensus 427 ~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s 506 (646)
T 4b3f_X 427 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQS 506 (646)
T ss_dssp HHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----C
T ss_pred hcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCcc
Confidence 5 334568999999999999999999999999988876654322111 11122358899999553 22336789
Q ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCeEEEEcccHHHHHHHHHHhccccccCCCCceEEccCCCCCCccCCEEEEEcc
Q 000053 712 CRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQGGEEDIIIISTV 791 (2576)
Q Consensus 712 ~~N~~Ea~~v~~lv~~L~~~~~~~~~~~sIgIITPY~aQv~~I~~~L~~~~~~~~~~~v~V~TVd~fQG~E~DiVIlS~V 791 (2576)
+.|..||..|..++..|++.+. +..+|||||||++|+.+|++.|.+.+ ..++|+|||+|||+|+||||+|+|
T Consensus 507 ~~N~~EA~~V~~~v~~L~~~gv---~~~dIgVItpYraQ~~~l~~~l~~~~-----~~i~v~TVd~fQG~E~dvII~S~v 578 (646)
T 4b3f_X 507 KGNPGEVRLVSLHIQALVDAGV---PARDIAVVSPYNLQVDLLRQSLVHRH-----PELEIKSVDGFQGREKEAVILSFV 578 (646)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTC---CGGGEEEEESCHHHHHHHHHHHTTTC-----TTCEEEEGGGGTTCCEEEEEEECC
T ss_pred ccCHHHHHHHHHHHHHHHhcCC---CcCcEEEECCCHHHHHHHHHHHHHhC-----CCCEECChhhcccccCCEEEEEec
Confidence 9999999999999999998764 66799999999999999999997643 368999999999999999999999
Q ss_pred cCCCCCccccCCCCCceEEecccccccEEEEechhhhhcCchHHHHHHHHHHhcCceecc
Q 000053 792 RSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNA 851 (2576)
Q Consensus 792 rs~~~~~~gFl~d~~RlNVAlTRAR~~LiIVGn~~~L~~~~~~W~~li~~~~~r~~~~~~ 851 (2576)
|++..+.+||+.|+||+|||+||||++||||||..+|.++ +.|+.|+++++++|+++.+
T Consensus 579 rsn~~~~iGFl~~~rRlNVAlTRAk~~liivGn~~~l~~~-~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 579 RSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNH-AFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp CCCTTCCCCSTTCHHHHHHHHHTEEEEEEEEECHHHHTTS-HHHHHHHHHHHHSSEEEEG
T ss_pred cCCCCCCccccCCcCcEEeEhhhhhCeEEEEEchHHhcCC-HHHHHHHHHHHHCCCEeeH
Confidence 9999999999999999999999999999999999999875 8999999999999998865
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-58 Score=629.05 Aligned_cols=580 Identities=27% Similarity=0.384 Sum_probs=390.2
Q ss_pred chhhhhchhcccccccccCcccCChhHHHhhchhhHHHHHHHHHHhhhhcccCCCceEEEEEeccCCCCCceEEEEEccc
Q 000053 32 SLEDIFNEDLFKDKVKRIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQVVAFEDSKPYGSMLYDVKVDCW 111 (2576)
Q Consensus 32 s~~diln~~l~~~~v~~IP~tF~s~~~Y~~sf~~~LlEEtra~l~Ssl~~is~ap~~~i~~~~~~~~~~~~~y~i~~~~~ 111 (2576)
+|+||.+.+ .++++++||++|.|..+|.+.|.|+|.-|-.+|.. +.......-..+.. ..+..+..++...+...
T Consensus 164 ~l~d~~~~~-~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 238 (802)
T 2xzl_A 164 TINDIDAPE-EQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQ--LKESQALEHISVSW--SLALNNRHLASFTLSTF 238 (802)
T ss_dssp CC-------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHH--HHCCC--CCBCEEE--EECTTSCEEEEEC----
T ss_pred chhhhhccc-ccccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhHhhccCceEee--eccCCCeEEEEEEeccc
Confidence 588999887 77889999999999999999999999988877754 12211111112211 11223333333333211
Q ss_pred ccccCCCCCCcccCCCCCEEEEccCCCCCCccccccCceeEEEEEeeeccCCcccCCCCceeEEEeeccccc-ccc-Ccc
Q 000053 112 RNRFSNLGREPYKTLPGDILVLADAKPETASDLQRVGRMWTFVSVANVTEDENEIDTSPTYFKVNATKEIQI-DVS-KKS 189 (2576)
Q Consensus 112 ~~~~~~~~~~~y~p~~GDii~lt~~kP~~~~dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~sk~i~~-~~~-~~~ 189 (2576)
....+.+.+||.|.++...|.. .....-|+|.++.+.. ...+.|.+...-.. ... ...
T Consensus 239 -------~~~~~~~~~GD~v~l~~~~~~~-------~~~~~~g~V~~v~~~~------~~~v~v~~~~~~~~~p~~~~~~ 298 (802)
T 2xzl_A 239 -------ESNELKVAIGDEMILWYSGMQH-------PDWEGRGYIVRLPNSF------QDTFTLELKPSKTPPPTHLTTG 298 (802)
T ss_dssp ------------CCCTTCEEEEEECSSSS-------SCEEEEEEEEECCC---------CCEEEEECCCSSCCCTTCCSS
T ss_pred -------ccCCCCCCCCCEEEEEECCCCC-------CceeEEEEEEEECCCC------CCEEEEEEeCCCCCCccccCCC
Confidence 1123578899999999766642 1223458898876421 13466766432111 111 223
Q ss_pred eEEEEeecccchhhHhhhcccC-----C-CHHHHHHHHhcC---------------------------------CCCCeE
Q 000053 190 LFVIFLINRTSNRRIWNSLHMK-----G-NLKIIKELLCTD---------------------------------SGATVQ 230 (2576)
Q Consensus 190 ~~~~~L~N~~t~~ri~~~l~~~-----~-~~~~i~~vl~~~---------------------------------~~~~v~ 230 (2576)
..+-|+.|.+||.|++.+|+.. . ...+...++... ..+++.
T Consensus 299 ~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~ 378 (802)
T 2xzl_A 299 FTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLS 378 (802)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEE
T ss_pred eEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCCCE
Confidence 4456899999999999988521 1 112222222100 016789
Q ss_pred EEEcCCCCChhHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHHHhhhhhccccccccccccEEEccCcccccc
Q 000053 231 LIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDALFFPLGEILLLGNNERLKV 309 (2576)
Q Consensus 231 LIwGPPGTGKTktIs~Ll~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~lv~es~~~~~~~~~~~~lgdillfGn~~rm~i 309 (2576)
+|+||||||||+|++.++..|+. .+.+||+|||||.|+|++++|+.+. + .+++++|++.+..+
T Consensus 379 lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~---------------g-~~ilR~g~~~r~~i 442 (802)
T 2xzl_A 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL---------------G-LKVVRLTAKSREDV 442 (802)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT---------------T-CCEEECCCGGGTTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh---------------C-ccEEeecccchhhh
Confidence 99999999999999999999987 6899999999999999999999742 1 25788887655433
Q ss_pred cccchhhhHHHHHHHHhhhccCCCCcchhhhhhHHHHHhhHHHHHHHHHhhhhccccccccchhhhhhccccCCcccccc
Q 000053 310 DSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEI 389 (2576)
Q Consensus 310 d~~l~~v~Ld~Rv~~L~~~f~~~~gw~~~L~sli~lLen~~~~y~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (2576)
.+......++..+..
T Consensus 443 ~~~~~~~tl~~~~~~----------------------------------------------------------------- 457 (802)
T 2xzl_A 443 ESSVSNLALHNLVGR----------------------------------------------------------------- 457 (802)
T ss_dssp CCTTGGGBHHHHHHT-----------------------------------------------------------------
T ss_pred cchhhhhhHHHHHHh-----------------------------------------------------------------
Confidence 221111111110000
Q ss_pred chhhHHHhhhhhhcccccchhhhcccccccccccccchhHHHHHhhhhcccchhhhhhhhhccCCCccccccchhhHHHH
Q 000053 390 KPFLEFVRERFKCIINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMAT 469 (2576)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~f~~~~~~~~~~~l~~~~~~l~~~lp~~~~s~~~~~~~~~ 469 (2576)
.+. ...+.
T Consensus 458 ----------------------------------------------------------------~~~-----~~l~~--- 465 (802)
T 2xzl_A 458 ----------------------------------------------------------------GAK-----GELKN--- 465 (802)
T ss_dssp ----------------------------------------------------------------TCC-----THHHH---
T ss_pred ----------------------------------------------------------------hcH-----HHHHH---
Confidence 000 00000
Q ss_pred HHHHHHHHHHHhhhcccchHHHHHHhcccccccchhhHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCChhhhhHHHHHH
Q 000053 470 LISLLDSFETLLFEDNLVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDL 549 (2576)
Q Consensus 470 l~~~L~~~~~ll~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~lk~L~~~~~~l~lp~~~~k~~~~~~ 549 (2576)
+...... ......++ ...+..+. +.
T Consensus 466 l~~~~~~------~~~ls~~~-------------------------------~~~~~~~~------------------~~ 490 (802)
T 2xzl_A 466 LLKLKDE------VGELSASD-------------------------------TKRFVKLV------------------RK 490 (802)
T ss_dssp HHHHHHH------HSCCCHHH-------------------------------HHHHHHHH------------------HH
T ss_pred HHHHHHh------hccCCHHH-------------------------------HHHHHHHH------------------HH
Confidence 0000000 00000000 00000000 01
Q ss_pred HHHHHhcCCcEEEEccccchhhhhccCCCCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhh
Q 000053 550 LKRFCLKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEAC 629 (2576)
Q Consensus 550 i~~~~l~~a~VI~~T~sss~~l~~~~~~~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~ 629 (2576)
....++..++||++|+.++.. ..+.. .||+||||||+|+++++.++|+. .+.+++|+||||+||||++.+..+...+
T Consensus 491 ~~~~~l~~a~VI~~T~~~~~~-~~L~~-~fd~viIDEA~q~~e~~~li~l~-~~~~~lilvGD~~QL~pvv~s~~a~~~g 567 (802)
T 2xzl_A 491 TEAEILNKADVVCCTCVGAGD-KRLDT-KFRTVLIDESTQASEPECLIPIV-KGAKQVILVGDHQQLGPVILERKAADAG 567 (802)
T ss_dssp HHHHHHHTCSEEEEETTGGGC-TTCCS-CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTT
T ss_pred HHHHHhccCCEEEechhhcCh-HHHhc-cCCEEEEECccccchHHHHHHHH-hCCCEEEEEeCccccCCeechhhhhhcC
Confidence 234557899999999987653 22333 89999999999999999888885 4578999999999999999887777788
Q ss_pred ccccHHHHHhhccCCccccccccccCcccccccccccccCcccCCccccccccccccCCCC-CCCCcEEEEccCCccc--
Q 000053 630 FGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGP-MYGPYSFINVFGGREE-- 706 (2576)
Q Consensus 630 ~~~SLfeRL~~~g~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~-~~~~~~fidv~~g~e~-- 706 (2576)
++.|+|+|+...+.+.++|++||||||+|++|+|..||+|+|.+++....+.......+.+ ...|+.|+++. |.++
T Consensus 568 l~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~-g~~~~~ 646 (802)
T 2xzl_A 568 LKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANY-GREEIS 646 (802)
T ss_dssp TTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECC-CCCEEC
T ss_pred CchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcC-Cceeec
Confidence 9999999999888889999999999999999999999999998877654432211111111 13578888884 4333
Q ss_pred cccccccCHHHHHHHHHHHHHHHhcccCCCCCCeEEEEcccHHHHHHHHHHhccccc--cCCCCceEEccCCCCCCccCC
Q 000053 707 FIEHSCRNMVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYV--NSAGFAVKVMSVDGFQGGEED 784 (2576)
Q Consensus 707 ~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~~~~sIgIITPY~aQv~~I~~~L~~~~~--~~~~~~v~V~TVd~fQG~E~D 784 (2576)
..+.|+.|..||..|.+++..|.+.+. +..+|||||||++|+..|++.|...-. ......+.|+|||+|||.|+|
T Consensus 647 ~~~~s~~N~~EA~~V~~~v~~L~~~g~---~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~d 723 (802)
T 2xzl_A 647 ANGTSFLNRIEAMNCERIITKLFRDGV---KPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKD 723 (802)
T ss_dssp TTSSSEECHHHHHHHHHHHHHHHHTTC---CGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHcCC---CcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccC
Confidence 267789999999999999999987643 567999999999999999999864310 000126899999999999999
Q ss_pred EEEEEcccCCCCCccccCCCCCceEEecccccccEEEEechhhhhcCchHHHHHHHHHHhcCceeccC
Q 000053 785 IIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNAD 852 (2576)
Q Consensus 785 iVIlS~Vrs~~~~~~gFl~d~~RlNVAlTRAR~~LiIVGn~~~L~~~~~~W~~li~~~~~r~~~~~~~ 852 (2576)
+||+|+||++..+.+||+.+++|+|||+||||++|+||||..+|.++ +.|+.|+++++++||+++++
T Consensus 724 vVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~-~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 724 YIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARN-TLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp EEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTS-HHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccC-hHHHHHHHHHHHcCCeecCC
Confidence 99999999998888999999999999999999999999999999875 89999999999999999873
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=8.4e-57 Score=616.65 Aligned_cols=569 Identities=27% Similarity=0.354 Sum_probs=391.8
Q ss_pred cccccccCcccCChhHHHhhchhhHHHHHHHHHHhhhhcccCCCceEEE-EEeccCCCCCceEEEEEcccccccCCCCCC
Q 000053 43 KDKVKRIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQVV-AFEDSKPYGSMLYDVKVDCWRNRFSNLGRE 121 (2576)
Q Consensus 43 ~~~v~~IP~tF~s~~~Y~~sf~~~LlEEtra~l~Ssl~~is~ap~~~i~-~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~ 121 (2576)
.+++.+||++|.|+.+|.+.|.|+|.-|-..|.. ++. +.. ...+. +.. .+..+..+..+.+.. . ..
T Consensus 172 ~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~--~~e-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~--~------~~ 238 (800)
T 2wjy_A 172 DEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK--LKE-SQT-QDNITVRWD-LGLNKKRIAYFTLPK--T------DS 238 (800)
T ss_dssp --CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHH--HHH-HTC-EEEECCEEE-ECTTCCEEEEECCCB--C------CC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhh-hhh-ccceEEEEE-ecCCCeeEEEEEecc--c------cC
Confidence 4578999999999999999999999999877753 111 111 11111 111 122232233333322 1 12
Q ss_pred cccCCCCCEEEEccCCCCCCccccccCceeEEEEEeeeccCCcccCCCCceeEEEeeccccccccCcceEE-EEeecccc
Q 000053 122 PYKTLPGDILVLADAKPETASDLQRVGRMWTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDVSKKSLFV-IFLINRTS 200 (2576)
Q Consensus 122 ~y~p~~GDii~lt~~kP~~~~dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~sk~i~~~~~~~~~~~-~~L~N~~t 200 (2576)
...+.+||+|.++...|.. ......|.|.++... ....+.+.++............|. -|+.|.+|
T Consensus 239 ~~~l~~GD~v~l~~~~~~~-------~~~~~~g~V~~v~~~------~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~ 305 (800)
T 2wjy_A 239 DMRLMQGDEICLRYKGDLA-------PLWKGIGHVIKVPDN------YGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTS 305 (800)
T ss_dssp --CCCTTCEEEEEECSSSS-------CCEEEEEEEEECSBT------TBSCEEEEESCCTTCCTTCCSCEEEEECCCCHH
T ss_pred CCCCCCCCEEEEEECCCCC-------CCceeEEEEEEEcCC------CCCEEEEEEccCCCCccccCCCceEEEeecCCh
Confidence 3478899999999766532 223467899887642 123466666543222111122244 48899999
Q ss_pred hhhHhhhcccC-----C-CHHHHHHHHhcC---------------------------------CCCCeEEEEcCCCCChh
Q 000053 201 NRRIWNSLHMK-----G-NLKIIKELLCTD---------------------------------SGATVQLIWGPPGTGKT 241 (2576)
Q Consensus 201 ~~ri~~~l~~~-----~-~~~~i~~vl~~~---------------------------------~~~~v~LIwGPPGTGKT 241 (2576)
|.|++.+|+.. . ...+...++... ..+++.+|+||||||||
T Consensus 306 ~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT 385 (800)
T 2wjy_A 306 FDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT 385 (800)
T ss_dssp HHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHH
Confidence 99999988421 0 111222121100 01679999999999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHHHhhhhhccccccccccccEEEccCcccccccccchhhhHHH
Q 000053 242 KTVSMLLVILLQ-MKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDY 320 (2576)
Q Consensus 242 ktIs~Ll~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~lv~es~~~~~~~~~~~~lgdillfGn~~rm~id~~l~~v~Ld~ 320 (2576)
+|++.++..|+. .+.+||+|||||.|++++.+|+.+. + .+++++|++.+..++.......++.
T Consensus 386 ~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~---------------g-~~vvRlg~~~r~~i~~~~~~~tlh~ 449 (800)
T 2wjy_A 386 VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT---------------G-LKVVRLCAKSREAIDSPVSFLALHN 449 (800)
T ss_dssp HHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT---------------T-CCEEECCCGGGGGCCCTTGGGBHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh---------------C-cceEeecccchhhhcchhhhhhHHH
Confidence 999999999997 6899999999999999999998632 1 2478888765432221111111111
Q ss_pred HHHHHhhhccCCCCcchhhhhhHHHHHhhHHHHHHHHHhhhhccccccccchhhhhhccccCCccccccchhhHHHhhhh
Q 000053 321 RVKRLADCFAPLTGWSHCFASMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERF 400 (2576)
Q Consensus 321 Rv~~L~~~f~~~~gw~~~L~sli~lLen~~~~y~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (2576)
.+...
T Consensus 450 ~~~~~--------------------------------------------------------------------------- 454 (800)
T 2wjy_A 450 QIRNM--------------------------------------------------------------------------- 454 (800)
T ss_dssp HHHTC---------------------------------------------------------------------------
T ss_pred HHHcC---------------------------------------------------------------------------
Confidence 00000
Q ss_pred hhcccccchhhhcccccccccccccchhHHHHHhhhhcccchhhhhhhhhccCCCccccccchhhHHHHHHHHHHHHHHH
Q 000053 401 KCIINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMATLISLLDSFETL 480 (2576)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~f~~~~~~~~~~~l~~~~~~l~~~lp~~~~s~~~~~~~~~l~~~L~~~~~l 480 (2576)
+. ...+ +.+..+
T Consensus 455 ------------------------------------------------------~~----~~~l----------~~l~~~ 466 (800)
T 2wjy_A 455 ------------------------------------------------------DS----MPEL----------QKLQQL 466 (800)
T ss_dssp ------------------------------------------------------TT----CHHH----------HHHHHH
T ss_pred ------------------------------------------------------cc----HHHH----------HHHHHH
Confidence 00 0000 000000
Q ss_pred hhh-cccchHHHHHHhcccccccchhhHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCChhhhhHHHHHHHHHHHhcCCc
Q 000053 481 LFE-DNLVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDLLKRFCLKRAS 559 (2576)
Q Consensus 481 l~~-~~~~~eel~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~lk~L~~~~~~l~lp~~~~k~~~~~~i~~~~l~~a~ 559 (2576)
... ...... + ...++.+. +.+...++..++
T Consensus 467 ~~~~~~~~~~-------------------~------------~~~~~~~~------------------~~~~~~~l~~a~ 497 (800)
T 2wjy_A 467 KDETGELSSA-------------------D------------EKRYRALK------------------RTAERELLMNAD 497 (800)
T ss_dssp HTTTSCCCHH-------------------H------------HHHHHHHH------------------HHHHHHHHHHCS
T ss_pred HHhhcccChH-------------------H------------HHHHHHHH------------------HHHHHhhhccCC
Confidence 000 000000 0 00000110 113345678899
Q ss_pred EEEEccccchhhhhccCCCCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhhccccHHHHHh
Q 000053 560 LFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLS 639 (2576)
Q Consensus 560 VI~~T~sss~~l~~~~~~~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~ 639 (2576)
||+||++++... .+....||+||||||+|+++++.++|+. .+.+++|+||||+||||++.+..+...+++.|+|+|+.
T Consensus 498 VI~~T~~~~~~~-~l~~~~fd~viIDEAsQ~~e~~~li~l~-~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~ 575 (800)
T 2wjy_A 498 VICCTCVGAGDP-RLAKMQFRSILIDESTQATEPECMVPVV-LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 575 (800)
T ss_dssp EEEEETGGGGCT-TTTTCCCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHH
T ss_pred EEEEchhhhCCh-hhhcCCCCEEEEECCCCCCcHHHHHHHH-hcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHH
Confidence 999999876532 2345679999999999999999888885 45789999999999999998877778889999999999
Q ss_pred hccCCccccccccccCcccccccccccccCcccCCccccccccccccCCCC-CCCCcEEEEccCCccc--cccccccCHH
Q 000053 640 HLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGP-MYGPYSFINVFGGREE--FIEHSCRNMV 716 (2576)
Q Consensus 640 ~~g~~~~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~-~~~~~~fidv~~g~e~--~~~~S~~N~~ 716 (2576)
..|.+.++|++||||||+|++|+|..||+|+|.+++....+.......+.+ ...|+.|+++. |.++ ..+.|+.|..
T Consensus 576 ~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~-g~e~~~~~~~S~~N~~ 654 (800)
T 2wjy_A 576 VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQ-GQEEIASSGTSYLNRT 654 (800)
T ss_dssp HTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECC-CCCEECSSBSCEECHH
T ss_pred hCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcC-CceeecCCCCcccCHH
Confidence 888889999999999999999999999999998877654432221111111 24578898884 4433 2678899999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCeEEEEcccHHHHHHHHHHhcccccc--CCCCceEEccCCCCCCccCCEEEEEcccCC
Q 000053 717 EVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVN--SAGFAVKVMSVDGFQGGEEDIIIISTVRSN 794 (2576)
Q Consensus 717 Ea~~v~~lv~~L~~~~~~~~~~~sIgIITPY~aQv~~I~~~L~~~~~~--~~~~~v~V~TVd~fQG~E~DiVIlS~Vrs~ 794 (2576)
||..|.+++..|++.+. +..+|||||||++|+..|++.+.+.... .....+.|+|||+|||+|+|+||+|+||++
T Consensus 655 Ea~~V~~~v~~L~~~g~---~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~ 731 (800)
T 2wjy_A 655 EAANVEKITTKLLKAGA---KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 731 (800)
T ss_dssp HHHHHHHHHHHHHHTTC---CGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCS
T ss_pred HHHHHHHHHHHHHHcCC---CcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCC
Confidence 99999999999987653 5579999999999999999998642110 001258999999999999999999999999
Q ss_pred CCCccccCCCCCceEEecccccccEEEEechhhhhcCchHHHHHHHHHHhcCceeccC
Q 000053 795 NGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNAD 852 (2576)
Q Consensus 795 ~~~~~gFl~d~~RlNVAlTRAR~~LiIVGn~~~L~~~~~~W~~li~~~~~r~~~~~~~ 852 (2576)
..+.+||+.+++|+|||+||||++|+||||..+|.++ +.|+.++++++++||+++++
T Consensus 732 ~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~-~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 732 EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp CCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSS-HHHHHHHHHHHHTTCEEESC
T ss_pred CccccccccCcchhhhhHHhhhccEEEEECHHHhccC-HHHHHHHHHHHHCCCEEeCC
Confidence 8888999999999999999999999999999999875 89999999999999999874
No 4
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=2.6e-57 Score=613.52 Aligned_cols=565 Identities=27% Similarity=0.348 Sum_probs=380.0
Q ss_pred ccCcccCChhHHHhhchhhHHHHHHHHHHhhhhcccCCCceEEEEEeccCCCCCceEEEEEcccccccCCCCCCcccCCC
Q 000053 48 RIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQVVAFEDSKPYGSMLYDVKVDCWRNRFSNLGREPYKTLP 127 (2576)
Q Consensus 48 ~IP~tF~s~~~Y~~sf~~~LlEEtra~l~Ssl~~is~ap~~~i~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~y~p~~ 127 (2576)
+|+.||.|+.+|.+.|.|+|..|-.+|... -+. .. ...+..-...+..+..+....+.. . + ....+.+
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~--~---~---~~~~~~~ 68 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKL-KES--QT-QDNITVRWDLGLNKKRIAYFTLPK--T---D---SDMRLMQ 68 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHH--TC-EEEECEEEEECTTSCEEEEEECC---------------CCT
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHH-Hhh--hh-ccCceEEeeecCCCceEEEEEecc--c---c---cCCcCCC
Confidence 478999999999999999999998877532 111 11 112211111122232233333322 1 1 1247889
Q ss_pred CCEEEEccCCCCCCccccccCceeEEEEEeeeccCCcccCCCCceeEEEeecccccccc-CcceEEEEeecccchhhHhh
Q 000053 128 GDILVLADAKPETASDLQRVGRMWTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDVS-KKSLFVIFLINRTSNRRIWN 206 (2576)
Q Consensus 128 GDii~lt~~kP~~~~dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~sk~i~~~~~-~~~~~~~~L~N~~t~~ri~~ 206 (2576)
||+|.|+...|.. +.....|.|.++... ....+.|.++........ ......-++.|.+||.|++.
T Consensus 69 Gd~v~l~~~~~~~-------~~~~~~g~v~~~~~~------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 135 (624)
T 2gk6_A 69 GDEICLRYKGDLA-------PLWKGIGHVIKVPDN------YGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS 135 (624)
T ss_dssp TCEEEEEECSSSS-------CCCEEEEEEEECSCS------SCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHH
T ss_pred CCEEEEEECCCCC-------CCcEEEEEEEEecCC------CCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHH
Confidence 9999999765432 223456899988542 113577776543221111 22334458899999999999
Q ss_pred hcccC-----C-CHHHHHHHHhc---------------------------------CCCCCeEEEEcCCCCChhHHHHHH
Q 000053 207 SLHMK-----G-NLKIIKELLCT---------------------------------DSGATVQLIWGPPGTGKTKTVSML 247 (2576)
Q Consensus 207 ~l~~~-----~-~~~~i~~vl~~---------------------------------~~~~~v~LIwGPPGTGKTktIs~L 247 (2576)
+|+.. . .-.+...++.. ...+++.+|+||||||||+|++.+
T Consensus 136 al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~ 215 (624)
T 2gk6_A 136 ALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI 215 (624)
T ss_dssp HHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHH
Confidence 88421 0 00111111110 001679999999999999999999
Q ss_pred HHHHHh-CCCeEEEEecChHHHHHHHHHHHHHHHhhhhhccccccccccccEEEccCcccccccccchhhhHHHHHHHHh
Q 000053 248 LVILLQ-MKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLA 326 (2576)
Q Consensus 248 l~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~lv~es~~~~~~~~~~~~lgdillfGn~~rm~id~~l~~v~Ld~Rv~~L~ 326 (2576)
+..|+. .+.+||+|||||.|+|++++|+.+. + .+++++|++.+..++.......++..+.
T Consensus 216 i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~---------------~-~~~~R~~~~~r~~~~~~~~~~tl~~~~~--- 276 (624)
T 2gk6_A 216 VYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT---------------G-LKVVRLCAKSREAIDSPVSFLALHNQIR--- 276 (624)
T ss_dssp HHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT---------------T-CCEEECCCTGGGSCCCTTTTTBHHHHHT---
T ss_pred HHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc---------------C-CeEEeeccccchhhccchhhhhHHHHHH---
Confidence 999997 6899999999999999999998632 1 2478888765532211111111100000
Q ss_pred hhccCCCCcchhhhhhHHHHHhhHHHHHHHHHhhhhccccccccchhhhhhccccCCccccccchhhHHHhhhhhhcccc
Q 000053 327 DCFAPLTGWSHCFASMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIING 406 (2576)
Q Consensus 327 ~~f~~~~gw~~~L~sli~lLen~~~~y~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 406 (2576)
.+
T Consensus 277 ~~------------------------------------------------------------------------------ 278 (624)
T 2gk6_A 277 NM------------------------------------------------------------------------------ 278 (624)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred hc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cchhhhcccccccccccccchhHHHHHhhhhcccchhhhhhhhhccCCCccccccchhhHHHHHHHHHHHHHHHhhh-cc
Q 000053 407 DIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMATLISLLDSFETLLFE-DN 485 (2576)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~sf~~f~~~~~~~~~~~l~~~~~~l~~~lp~~~~s~~~~~~~~~l~~~L~~~~~ll~~-~~ 485 (2576)
+. ... +..+..+... ..
T Consensus 279 ------------------------------------------------~~----~~~----------l~~l~~~~~~~~~ 296 (624)
T 2gk6_A 279 ------------------------------------------------DS----MPE----------LQKLQQLKDETGE 296 (624)
T ss_dssp ------------------------------------------------SS----CHH----------HHHHHTTCC----
T ss_pred ------------------------------------------------cc----hHH----------HHHHHHHHHhhcc
Confidence 00 000 0000000000 00
Q ss_pred cchHHHHHHhcccccccchhhHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCChhhhhHHHHHHHHHHHhcCCcEEEEcc
Q 000053 486 LVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDLLKRFCLKRASLFFSTA 565 (2576)
Q Consensus 486 ~~~eel~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~lk~L~~~~~~l~lp~~~~k~~~~~~i~~~~l~~a~VI~~T~ 565 (2576)
.... + ...++.+. +.+...++..++||+||+
T Consensus 297 ~~~~-------------------~------------~~~~~~~~------------------~~~~~~~l~~~~vI~~T~ 327 (624)
T 2gk6_A 297 LSSA-------------------D------------EKRYRALK------------------RTAERELLMNADVICCTC 327 (624)
T ss_dssp CCHH-------------------H------------HHHHHHHH------------------HHHHHHHHHTCSEEEEET
T ss_pred cCHH-------------------H------------HHHHHHHH------------------HHHHHHHHhcCCEEEEcC
Confidence 0000 0 00001110 013345678999999999
Q ss_pred ccchhhhhccCCCCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhhccccHHHHHhhccCCc
Q 000053 566 SSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSK 645 (2576)
Q Consensus 566 sss~~l~~~~~~~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~g~~~ 645 (2576)
+++.. ..+....||+||||||+|+++++.++|+.. +++++|+||||+||||++.+..+...+++.|+|+|+...+.+.
T Consensus 328 ~~~~~-~~l~~~~fd~viIDEAsQ~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~ 405 (624)
T 2gk6_A 328 VGAGD-PRLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRP 405 (624)
T ss_dssp GGGGC-GGGTTCCCSEEEETTGGGSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCC
T ss_pred hhhcc-hhhhcCCCCEEEEecccccCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCc
Confidence 87653 223456799999999999999998998864 5689999999999999998877778889999999999888888
Q ss_pred cccccccccCcccccccccccccCcccCCccccccccccccCCCC-CCCCcEEEEccCCcccc--ccccccCHHHHHHHH
Q 000053 646 HLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGP-MYGPYSFINVFGGREEF--IEHSCRNMVEVSVVM 722 (2576)
Q Consensus 646 ~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~-~~~~~~fidv~~g~e~~--~~~S~~N~~Ea~~v~ 722 (2576)
++|++||||||+|++|+|..||+|+|.+++....+.......+.+ ...|+.|+++. |.++. .+.|+.|..||..|.
T Consensus 406 ~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~~~~s~~N~~Ea~~v~ 484 (624)
T 2gk6_A 406 IRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQ-GQEEIASSGTSYLNRTEAANVE 484 (624)
T ss_dssp EECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECC-CCEECCTTSSCCEEHHHHHHHH
T ss_pred EEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcC-CcceecCCCCCccCHHHHHHHH
Confidence 999999999999999999999999998877654432211111211 14578888884 44332 577899999999999
Q ss_pred HHHHHHHhcccCCCCCCeEEEEcccHHHHHHHHHHhcccccc--CCCCceEEccCCCCCCccCCEEEEEcccCCCCCccc
Q 000053 723 KILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVN--SAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIG 800 (2576)
Q Consensus 723 ~lv~~L~~~~~~~~~~~sIgIITPY~aQv~~I~~~L~~~~~~--~~~~~v~V~TVd~fQG~E~DiVIlS~Vrs~~~~~~g 800 (2576)
+++..|++.+. ++.+|||||||++|+..|++.+.....- .....+.|+|||+|||+|+|+||+|+||++..+.+|
T Consensus 485 ~~v~~l~~~g~---~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~g 561 (624)
T 2gk6_A 485 KITTKLLKAGA---KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIG 561 (624)
T ss_dssp HHHHHHHTTTC---CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CC
T ss_pred HHHHHHHHcCC---CCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCcc
Confidence 99999987643 5679999999999999999998642110 001258999999999999999999999999888899
Q ss_pred cCCCCCceEEecccccccEEEEechhhhhcCchHHHHHHHHHHhcCceeccC
Q 000053 801 FISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNAD 852 (2576)
Q Consensus 801 Fl~d~~RlNVAlTRAR~~LiIVGn~~~L~~~~~~W~~li~~~~~r~~~~~~~ 852 (2576)
|+.+++|+|||+||||++|+||||..+|.++ +.|+.|+++|+++||+++++
T Consensus 562 fl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~-~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 562 FLNDPRRLNVALTRARYGVIIVGNPKALSKQ-PLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp TTTCHHHHHHHTTSEEEEEEEEECHHHHTTS-HHHHHHHHHHHHTTCCCCSC
T ss_pred ccCCcceeeeehhhhhCcEEEEECHHHHccC-hHHHHHHHHHHHCCCEEeCC
Confidence 9999999999999999999999999999875 89999999999999998764
No 5
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=100.00 E-value=4.7e-42 Score=472.29 Aligned_cols=346 Identities=22% Similarity=0.308 Sum_probs=229.7
Q ss_pred CCCCHHHHHhhcCC-CCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEEE
Q 000053 1068 FEVTDEQLDMILFP-RSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFVT 1146 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~~~-~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~vT 1146 (2576)
-.||++|+++|.++ +|++|+||||||||+||++|+.. .+... ..++.+||+||
T Consensus 10 ~~Ln~~Q~~av~~~~g~~lV~AgAGSGKT~vL~~ri~~-----ll~~~---------------------~~~p~~IL~vT 63 (724)
T 1pjr_A 10 AHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAY-----LMAEK---------------------HVAPWNILAIT 63 (724)
T ss_dssp TTSCHHHHHHHHCCSSCEEEEECTTSCHHHHHHHHHHH-----HHHTT---------------------CCCGGGEEEEE
T ss_pred hhCCHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHHH-----HHHhc---------------------CCCHHHeEEEe
Confidence 35999999999775 79999999999999999999953 22211 23457999999
Q ss_pred cCHHHHHHHHHHHHhhhccccCCcccccCCCCCCcchhhhhhhhcCCCccccCCcccCCchhcHHHHHHHHhccccchhh
Q 000053 1147 VSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCNSYF 1226 (2576)
Q Consensus 1147 fS~~la~eik~ri~~l~~~~~~~~~~~~~~~~~~~~~d~~e~f~~ip~~~~~l~~~~fPl~~Tf~~fl~lLd~~l~~~ff 1226 (2576)
||++||.+|++|+.++..... .-+.+.|||+||..+-......
T Consensus 64 FTnkAA~Em~~Rl~~~l~~~~-----------------------------------~~~~v~Tfhs~~~~ilr~~~~~-- 106 (724)
T 1pjr_A 64 FTNKAAREMRERVQSLLGGAA-----------------------------------EDVWISTFHSMCVRILRRDIDR-- 106 (724)
T ss_dssp SSHHHHHHHHHHHHHHHGGGG-----------------------------------TTSEEEEHHHHHHHHHHHHGGG--
T ss_pred ccHHHHHHHHHHHHHHhcccc-----------------------------------cCcEEeeHHHHHHHHHHHHHHH--
Confidence 999999999999987643110 1134889999997763221100
Q ss_pred HHHhhhhhhhhccccc-hhHHHHHHHHhhhhhhhhhcccCChhhhHhhhhcCChhHHHHHHHHHHhccccchhhhccCCC
Q 000053 1227 ERFHNIWKNYGQLQNS-KSVFIETIIRKKEVNYERFSSSYWPHFNAQLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLN 1305 (2576)
Q Consensus 1227 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~~F~~~~w~~~~~~~~k~ld~~~v~~EI~s~IkG~~~~~~~~~~~ls 1305 (2576)
. +....+..+... ....+++.+.....+. +.+.+..+.. .++..| +..++
T Consensus 107 --~-g~~~~f~i~d~~d~~~l~~~~~~~~~~~~----------------~~~~~~~~~~-~i~~~k---------~~~~~ 157 (724)
T 1pjr_A 107 --I-GINRNFSILDPTDQLSVMKTILKEKNIDP----------------KKFEPRTILG-TISAAK---------NELLP 157 (724)
T ss_dssp --G-TCCTTCEECCHHHHHHHHHHHHHTTSCTT----------------TTCCHHHHHH-HHHHHH---------HTTCC
T ss_pred --h-CCCCCCEECCHHHHHHHHHHHHHHcCCCc----------------ccCCHHHHHH-HHHHHH---------HcCCC
Confidence 0 000001111110 1112222222211111 1223333332 234444 33456
Q ss_pred HHHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcccC----CCCccEEEEecCCCCCH
Q 000053 1306 REDYVNLSETRNSSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYK----GDEFHFVYIDEVQDLTM 1381 (2576)
Q Consensus 1306 ~e~Y~~l~r~r~~~l~~~~r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~~~----~~~yd~IlVDE~QD~~~ 1381 (2576)
+++|..... ......+..+|..|++.+.++|.+||+|++..++.+|...+.. ..+|+||+||||||||+
T Consensus 158 ~~~~~~~~~-------~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~ 230 (724)
T 1pjr_A 158 PEQFAKRAS-------TYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNR 230 (724)
T ss_dssp HHHHTTC----------CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCH
T ss_pred HHHHHHhcc-------CHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCH
Confidence 666532110 1134668889999999999999999999999999999875432 46899999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCccEEecccccCCchHH
Q 000053 1382 SQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGV 1461 (2576)
Q Consensus 1382 ~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~NYRS~~~I 1461 (2576)
.|+.+|+.|+.. ..++++|||++||||+ ||++++..+. .|.. ..++...+.|++||||++.|
T Consensus 231 ~Q~~ll~~L~~~-~~~l~vVGD~~QsIY~---fRGA~~~~~~--~f~~------------~~~~~~~i~L~~NyRSt~~I 292 (724)
T 1pjr_A 231 AQYTLVKKLAER-FQNICAVGDADQSIYR---WRGADIQNIL--SFER------------DYPNAKVILLEQNYRSTKRI 292 (724)
T ss_dssp HHHHHHHHHHTT-TCCEEEEECGGGCCCG---GGTCCTHHHH--THHH------------HSTTCEEEEECBCSSSCHHH
T ss_pred HHHHHHHHHHcC-CCeEEEEECchhhccc---ccCCCHHHHH--HHHH------------HCCCCcEEECCCCCCCCHHH
Confidence 999999999975 4589999999999987 6666665543 1210 11245679999999999999
Q ss_pred HHHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEccCCHHHHHHHHHHhhhhhcC-CcccCCccEEEEEechh
Q 000053 1462 LNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEVGG-NMVGFGAEQVILVRDDC 1536 (2576)
Q Consensus 1462 l~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~~~~~~~i~~i~~~i~~~~~-~~i~~~~~~aILvr~~~ 1536 (2576)
+++||.++......++.... .....|++|.+..+.+..+++..+...+..... .+.. ..+++||+|++.
T Consensus 293 l~~an~li~~n~~~~~k~l~-----~~~~~g~~i~~~~~~~~~~Ea~~va~~I~~l~~~~g~~-~~diAIL~R~~~ 362 (724)
T 1pjr_A 293 LQAANEVIEHNVNRKPKRIW-----TENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERR-YRDFAVLYRTNA 362 (724)
T ss_dssp HHHHHHHHTTCSSCCCCCCB-----CSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCC-GGGEEEEESSGG
T ss_pred HHHHHHHHHhCccccCcccc-----cccCCCCceEEEecCCHHHHHHHHHHHHHHHHHhcCCC-hhheeeeeecch
Confidence 99999998644333222111 112347788888888888888888888876543 3332 256888888754
No 6
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.1e-40 Score=447.94 Aligned_cols=343 Identities=18% Similarity=0.207 Sum_probs=219.2
Q ss_pred CCCHHHHHhhcCC-CCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEEEc
Q 000053 1069 EVTDEQLDMILFP-RSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFVTV 1147 (2576)
Q Consensus 1069 ~Lt~EQ~~iI~~~-~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~vTf 1147 (2576)
.||++|+++|.++ +|++|+|+||||||+||++|+..+ +... ..++.+||+|||
T Consensus 2 ~L~~~Q~~av~~~~~~~lV~AgaGSGKT~~l~~ri~~l-----l~~~---------------------~~~~~~IL~lTf 55 (673)
T 1uaa_A 2 RLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHL-----IRGC---------------------GYQARHIAAVTF 55 (673)
T ss_dssp CCCHHHHHHHHCCSSEEEECCCTTSCHHHHHHHHHHHH-----HHHH---------------------CCCGGGEEEEES
T ss_pred CCCHHHHHHHhCCCCCEEEEeCCCCChHHHHHHHHHHH-----HHhc---------------------CCCHHHeEEEec
Confidence 6899999999874 799999999999999999999532 2111 224579999999
Q ss_pred CHHHHHHHHHHHHhhhccccCCcccccCCCCCCcchhhhhhhhcCCCccccCCcccCCchhcHHHHHHHHhccccchhhH
Q 000053 1148 SPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCNSYFE 1227 (2576)
Q Consensus 1148 S~~la~eik~ri~~l~~~~~~~~~~~~~~~~~~~~~d~~e~f~~ip~~~~~l~~~~fPl~~Tf~~fl~lLd~~l~~~ff~ 1227 (2576)
|+++|.+|++|+.++..... ..-+.|.|||+||..+-.....
T Consensus 56 T~~Aa~em~~Rl~~~l~~~~----------------------------------~~~~~v~Tfhs~~~~il~~~~~---- 97 (673)
T 1uaa_A 56 TNKAAREMKERVGQTLGRKE----------------------------------ARGLMISTFHTLGLDIIKREYA---- 97 (673)
T ss_dssp SHHHHHHHHHHHHHHSCTTT----------------------------------TTTSEEEEHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHcCccc----------------------------------ccCCEEEeHHHHHHHHHHHHHH----
Confidence 99999999999987632100 0113488999999766321100
Q ss_pred HHhhhhhhhhccccc-hhHHHHHHHHhhhhhhhhhcccCChhhhHhhhhcCChhHHHHHHHHHHhccccchhhhccCCCH
Q 000053 1228 RFHNIWKNYGQLQNS-KSVFIETIIRKKEVNYERFSSSYWPHFNAQLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLNR 1306 (2576)
Q Consensus 1228 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~~F~~~~w~~~~~~~~k~ld~~~v~~EI~s~IkG~~~~~~~~~~~ls~ 1306 (2576)
.. +....+..+... ....+++.+.. .+ . +......++...|.. .....+++
T Consensus 98 ~~-g~~~~~~i~d~~~~~~l~~~~~~~------~~-~--------------~~~~~~~~~~~~i~~------~k~~~~~~ 149 (673)
T 1uaa_A 98 AL-GMKANFSLFDDTDQLALLKELTEG------LI-E--------------DDKVLLQQLISTISN------WKNDLKTP 149 (673)
T ss_dssp HT-TCCCCCCEECHHHHHHHHHHHTST------TS-C--------------SCHHHHHHHHHHHHH------HHTTTCCT
T ss_pred Hh-CCCCCCEEeCHHHHHHHHHHHHHH------hc-c--------------cchhhHHHHHHHHHH------HHHcCCCH
Confidence 00 000001111100 00111111110 00 0 001112222222221 01233444
Q ss_pred HHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccc----CCCCccEEEEecCCCCCHH
Q 000053 1307 EDYVNLSETRNSSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESY----KGDEFHFVYIDEVQDLTMS 1382 (2576)
Q Consensus 1307 e~Y~~l~r~r~~~l~~~~r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~~----~~~~yd~IlVDE~QD~~~~ 1382 (2576)
+++..... ......+..+|..|++.+.++|.+||+|++..++..|...+. ...+|+||+||||||||+.
T Consensus 150 ~~~~~~~~-------~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~ 222 (673)
T 1uaa_A 150 SQAAASAI-------GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTS 222 (673)
T ss_dssp THHHHTCC-------SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHH
T ss_pred HHHHHHhh-------hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHH
Confidence 44432211 123567889999999999999999999999999999976543 3578999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCccEEecccccCCchHHH
Q 000053 1383 QVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGVL 1462 (2576)
Q Consensus 1383 ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~NYRS~~~Il 1462 (2576)
|+.+|..|+.. +.++++|||++|+||+ ||.++...+. .|.. ..+....+.|++||||+++|+
T Consensus 223 Q~~ll~~L~~~-~~~l~~vGD~~QsIy~---frga~~~~~~--~~~~------------~~~~~~~~~L~~nyRs~~~I~ 284 (673)
T 1uaa_A 223 QYELVKLLVGS-RARFTVVGDDDQSIYS---WRGARPQNLV--LLSQ------------DFPALKVIKLEQNYRSSGRIL 284 (673)
T ss_dssp HHHHHHHHHTT-TCCEEEECCGGGCCCG---GGTBCTTHHH--HHHH------------HSTTCEEECCCCBSSSCHHHH
T ss_pred HHHHHHHHhcC-CCeEEEEeCchhhhhh---ccCCCHHHHH--HHHH------------hCCCCeEEECCCCCCCChHHH
Confidence 99999999875 4679999999999987 5555443332 1210 012456789999999999999
Q ss_pred HHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEccCCHHHHHHHHHHhhhhhc-CCcccCCccEEEEEec
Q 000053 1463 NLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEVG-GNMVGFGAEQVILVRD 1534 (2576)
Q Consensus 1463 ~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~~~~~~~i~~i~~~i~~~~-~~~i~~~~~~aILvr~ 1534 (2576)
+++|.++......++.... .....|+.|.+..+.+..+++..+...+.... ..+.. ..+++||+|+
T Consensus 285 ~~an~~~~~~~~~~~~~l~-----~~~~~g~~i~~~~~~~~~~e~~~va~~I~~l~~~~g~~-~~diaVL~r~ 351 (673)
T 1uaa_A 285 KAANILIANNPHVFEKRLF-----SELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQ-YKDYAILYRG 351 (673)
T ss_dssp HHHHHHHHTSCCSSCCCCC-----BSSCCCCCBEEEECSSHHHHHHHHHHHHHHHHHHHCCC-TTTEEEEESS
T ss_pred HHHHHHHHhchhccccccc-----ccCCCCCCceEEecCCHHHHHHHHHHHHHHHHhccCCC-ccCEEEEEec
Confidence 9999999754333322111 11123778888888888888888877776543 12222 2356666655
No 7
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=100.00 E-value=3.5e-40 Score=451.12 Aligned_cols=346 Identities=20% Similarity=0.245 Sum_probs=225.5
Q ss_pred CCCCHHHHHhhcCC-CCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEEE
Q 000053 1068 FEVTDEQLDMILFP-RSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFVT 1146 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~~~-~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~vT 1146 (2576)
-.||++|+++|.++ +|++|+||||||||+|+++|+..+ +... ..++.+||++|
T Consensus 8 ~~Ln~~Q~~av~~~~~~~lV~a~aGsGKT~~l~~ri~~l-----~~~~---------------------~~~~~~iL~lt 61 (647)
T 3lfu_A 8 DSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWL-----MSVE---------------------NCSPYSIMAVT 61 (647)
T ss_dssp TTCCHHHHHHHTCCSSCEEEEECTTSCHHHHHHHHHHHH-----HHTS---------------------CCCGGGEEEEE
T ss_pred hcCCHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHHHH-----HHhC---------------------CCChhhEEEEe
Confidence 46999999999875 799999999999999999999532 2211 23457999999
Q ss_pred cCHHHHHHHHHHHHhhhccccCCcccccCCCCCCcchhhhhhhhcCCCccccCCcccCCchhcHHHHHHHHhccccchhh
Q 000053 1147 VSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCNSYF 1226 (2576)
Q Consensus 1147 fS~~la~eik~ri~~l~~~~~~~~~~~~~~~~~~~~~d~~e~f~~ip~~~~~l~~~~fPl~~Tf~~fl~lLd~~l~~~ff 1226 (2576)
||++++.+|++++.++..... .-+.+.|||+||..+-.......
T Consensus 62 ft~~aa~e~~~rl~~~~~~~~-----------------------------------~~~~v~Tfhs~~~~il~~~~~~~- 105 (647)
T 3lfu_A 62 FTNKAAAEMRHRIGQLMGTSQ-----------------------------------GGMWVGTFHGLAHRLLRAHHMDA- 105 (647)
T ss_dssp SSHHHHHHHHHHHHHHHCSCC-----------------------------------TTCEEEEHHHHHHHHHHHTTGGG-
T ss_pred ccHHHHHHHHHHHHHHhcccc-----------------------------------CCcEEEcHHHHHHHHHHHHHHHh-
Confidence 999999999999987642110 12348899999977633221100
Q ss_pred HHHhhhhhhhhccccc-hhHHHHHHHHhhhhhhhhhcccCChhhhHhhhhcCChhHHHHHHHHHHhccccchhhhccCCC
Q 000053 1227 ERFHNIWKNYGQLQNS-KSVFIETIIRKKEVNYERFSSSYWPHFNAQLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLN 1305 (2576)
Q Consensus 1227 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~~F~~~~w~~~~~~~~k~ld~~~v~~EI~s~IkG~~~~~~~~~~~ls 1305 (2576)
+....+..+... ....+++.+.....+. +.+.+..+ ...++.+|. ..++
T Consensus 106 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-~~~i~~~k~---------~~~~ 155 (647)
T 3lfu_A 106 ----NLPQDFQILDSEDQLRLLKRLIKAMNLDE----------------KQWPPRQA-MWYINSQKD---------EGLR 155 (647)
T ss_dssp ----TCCTTCEEECHHHHHHHHHHHHHHTTCCT----------------TTSCHHHH-HHHHHHHHH---------TTCC
T ss_pred ----CCCCCCEEeCHHHHHHHHHHHHHHcCCCc----------------cccCHHHH-HHHHHHHHH---------cCCC
Confidence 000000111110 1112222222211110 11122222 233344442 2222
Q ss_pred HHHHHhhhhhccccccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcccC----CCCccEEEEecCCCCCH
Q 000053 1306 REDYVNLSETRNSSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYK----GDEFHFVYIDEVQDLTM 1381 (2576)
Q Consensus 1306 ~e~Y~~l~r~r~~~l~~~~r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~~~----~~~yd~IlVDE~QD~~~ 1381 (2576)
++++.... ......+..+|..|++.+.+.+.+||+|++..+...+...+.. ..+|+||+||||||||+
T Consensus 156 ~~~~~~~~--------~~~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~ 227 (647)
T 3lfu_A 156 PHHIQSYG--------NPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNN 227 (647)
T ss_dssp CCCC------------CCHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCH
T ss_pred HHHHHhcc--------chHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCH
Confidence 22221111 1234678899999999999999999999999999999775433 45799999999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCccEEecccccCCchHH
Q 000053 1382 SQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGV 1461 (2576)
Q Consensus 1382 ~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~NYRS~~~I 1461 (2576)
.|+.++..|+.. +.++++|||++|+||+ ||.++...+. .|.. ..+....+.|++||||+++|
T Consensus 228 ~q~~ll~~l~~~-~~~l~~vGD~~QsIy~---frga~~~~~~--~~~~------------~~~~~~~~~L~~nyRs~~~I 289 (647)
T 3lfu_A 228 IQYAWIRLLAGD-TGKVMIVGDDDQSIYG---WRGAQVENIQ--RFLN------------DFPGAETIRLEQNYRSTSNI 289 (647)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECGGGCCCG---GGTCCTTHHH--HHHH------------HCTTCEEEEECBCSSSCHHH
T ss_pred HHHHHHHHHhcC-CCEEEEEcCchhhhcc---ccCCCHHHHH--HHHH------------hCCCCeEEEcccCCCCCHHH
Confidence 999999999975 5689999999999987 5544443332 1110 01245678999999999999
Q ss_pred HHHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEccCCHHHHHHHHHHhhhhhcCCcccCCccEEEEEechhh
Q 000053 1462 LNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCV 1537 (2576)
Q Consensus 1462 l~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~~~~~~~i~~i~~~i~~~~~~~i~~~~~~aILvr~~~~ 1537 (2576)
++++|.++......++.... .....|+.+.+..+.+..+++..+...+......++. ..+++||+|++..
T Consensus 290 ~~~~n~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~e~~~ia~~I~~l~~~g~~-~~diaVL~r~~~~ 359 (647)
T 3lfu_A 290 LSAANALIENNNGRLGKKLW-----TDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGA-LAECAILYRSNAQ 359 (647)
T ss_dssp HHHHHHHHTTCSSCCCCCCB-----CSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHTTCC-GGGEEEEESSGGG
T ss_pred HHHHHHHHHhcccccCCccc-----cCCCCCCceEEEecCChHHHHHHHHHHHHHHHHcCCC-ccCEEEEEeCchh
Confidence 99999998643322221111 1112366788888888888888888888765444433 2578899888633
No 8
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=100.00 E-value=4.2e-36 Score=433.36 Aligned_cols=136 Identities=22% Similarity=0.317 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccc------------CCCCccEEEEecCCCCCHHHHHHHHHHhh
Q 000053 1325 RERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESY------------KGDEFHFVYIDEVQDLTMSQVALFKYVCK 1392 (2576)
Q Consensus 1325 r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~~------------~~~~yd~IlVDE~QD~~~~ql~LL~~L~~ 1392 (2576)
...+..++..|++.|.++|.+||+|++..++.+|...+. ...+|+||+||||||||+.|+.+|..|+.
T Consensus 346 ~~l~~~~~~~y~~~k~~~~~lDF~Dl~~~a~~lL~~~~~~~~~~p~~v~~~~~~~~~~IlVDEfQDt~~~Q~~il~~L~~ 425 (1232)
T 3u4q_A 346 VQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQDTNLVQESILQLVTS 425 (1232)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECHHHHHHHHHHHHBCCCC---CCBCHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHhhhcccccccChHHHHHHHHhCCCEEEEEccccCCHHHHHHHHHHhc
Confidence 344567888999999999999999999999999976421 14579999999999999999999999987
Q ss_pred cC--CCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCccEEecccccCCchHHHHHHHHHHH
Q 000053 1393 NI--EEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIE 1470 (2576)
Q Consensus 1393 ~~--~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~NYRS~~~Il~lAn~vi~ 1470 (2576)
.. +.++++|||++|+||+ ||.++...+....-.. ..........+.|++||||+++|++++|.++.
T Consensus 426 ~~~~~~~l~~vGD~~QsIY~---FRgAd~~~f~~~~~~~---------~~~~~~~~~~i~L~~NyRS~~~Il~~~n~lf~ 493 (1232)
T 3u4q_A 426 GPEETGNLFMVGDVKQSIYR---FRLAEPLLFLSKYKRF---------TESGEGTGRKIDLNKNFRSRADILDSTNFLFK 493 (1232)
T ss_dssp SCTTSSCEEEEECGGGCCCT---TTTCCTHHHHHHHHHS---------BSSCTTSCEEEEECEESSSCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEeCchHHhHh---ccCCCHHHHHHHHHHh---------hhhcCCCCcEeECCCCCCCChHHHHHHHHHHh
Confidence 52 3679999999999988 6666654432211000 00011234688999999999999999999997
Q ss_pred HH
Q 000053 1471 LL 1472 (2576)
Q Consensus 1471 ~~ 1472 (2576)
..
T Consensus 494 ~~ 495 (1232)
T 3u4q_A 494 QL 495 (1232)
T ss_dssp TT
T ss_pred hc
Confidence 44
No 9
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=100.00 E-value=9.2e-34 Score=408.03 Aligned_cols=130 Identities=25% Similarity=0.396 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcc--c----CCCCccEEEEecCCCCCHHHHHHHHHHhhc-CCCc
Q 000053 1325 RERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEES--Y----KGDEFHFVYIDEVQDLTMSQVALFKYVCKN-IEEG 1397 (2576)
Q Consensus 1325 r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~--~----~~~~yd~IlVDE~QD~~~~ql~LL~~L~~~-~~~~ 1397 (2576)
...+..++..|++.|.++|.+||+|++..+...|...+ . ...+|+||+||||||||+.|+.||..|+.. .+.+
T Consensus 329 ~~~~~~~~~~y~~~k~~~~~ldf~Dll~~~~~~L~~~~~~~l~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~ 408 (1180)
T 1w36_B 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHccCchHHHHHHHHhCCCEEEEECCccCCHHHHHHHHHHHcCCCCCe
Confidence 45567889999999999999999999999999997643 1 246799999999999999999999999863 3467
Q ss_pred EEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCccEEecccccCCchHHHHHHHHHHHHHh
Q 000053 1398 FVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLY 1473 (2576)
Q Consensus 1398 l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~L~~NYRS~~~Il~lAn~vi~~~~ 1473 (2576)
+|+|||++||||+ ||.+++..+.... . .....+.|.+||||+++|++++|.++....
T Consensus 409 l~~VGD~kQSIY~---FRGAd~~~~~~~~--~--------------~~~~~~~L~~NyRS~~~Il~~~N~lf~~~~ 465 (1180)
T 1w36_B 409 LLLIGDPKQAIYA---FRGADIFTYMKAR--S--------------EVHAHYTLDTNWRSAPGMVNSVNKLFSQTD 465 (1180)
T ss_dssp EEEEECGGGCCCG---GGTCCHHHHHHHH--H--------------HCCCEEECCEETTSCHHHHHHHHHHHHSSS
T ss_pred EEEEECCcccccc---CcCCCHHHHHHHH--H--------------hcCCceeCCCCcCCcHHHHHHHHHHHhccc
Confidence 9999999999998 7777765433211 0 013578999999999999999999997553
No 10
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.95 E-value=3.5e-26 Score=330.39 Aligned_cols=186 Identities=12% Similarity=0.096 Sum_probs=124.5
Q ss_pred ccCCCHHHHHhhhhhcc------ccccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcccCCCCccEEEEe
Q 000053 1301 NGKLNREDYVNLSETRN------SSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYKGDEFHFVYID 1374 (2576)
Q Consensus 1301 ~~~ls~e~Y~~l~r~r~------~~l~~~~r~~i~~if~~Y~~~k~~~g~~D~~Dlv~~~~~~L~~~~~~~~~yd~IlVD 1374 (2576)
...++++++....+... ..........+..+|..|++.+. .+.+||+|++..+.+.+...+.... +||+||
T Consensus 132 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~k~~~l~~iy~~y~~~l~-~~~~Df~Dll~~~~~~l~~~~~l~~--~~IlVD 208 (1166)
T 3u4q_B 132 RYCLEPEDIRRMAESGTASEYRGERVLSEKLHDLSILYQQMEKSLA-DQYLHSEDYLTLLAEHIPLAEDIKG--AHIYVD 208 (1166)
T ss_dssp HTTCCHHHHHHHHTTSTTSCCTTHHHHHHHHHHHHHHHHHHHHHST-TTCEEGGGHHHHHHHHSTTCGGGTT--CEEEEC
T ss_pred HcCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhccccccCC--CEEEEe
Confidence 45677888766543211 01112446678899999999998 8999999999999999987554433 899999
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCcEE--EEeC--------CCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccC
Q 000053 1375 EVQDLTMSQVALFKYVCKNIEEGFV--FSGD--------TAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQ 1444 (2576)
Q Consensus 1375 E~QD~~~~ql~LL~~L~~~~~~~l~--~vGD--------~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~ 1444 (2576)
||||||+.|+.+|+.|+.. ..+++ +||| ++|+||. ||.++...+. .|... . ..+
T Consensus 209 EfQD~~~~Q~~ll~~L~~~-~~~~~v~lvGD~~~~~~~~~~QsIY~---~rga~~~~l~--~~~~~---~-------~~~ 272 (1166)
T 3u4q_B 209 GFYQFTPQEFRVLEQLMVH-AEHITFSLTADKPSYEREPHELELFR---MTGKTYYRLH--QKAKE---L-------NLD 272 (1166)
T ss_dssp SCSCCCHHHHHHHHHHHHH-CSEEEEEEECSSCCSSSCCCTTCTTH---HHHHHHHHHH--HHHHH---T-------TCC
T ss_pred CCCCCCHHHHHHHHHHHHh-CCCEEEEEEeCcccccCCCCCCCcch---hHHHHHHHHH--HHHHH---c-------CCC
Confidence 9999999999999999976 34555 5699 8999976 5555544333 22110 0 012
Q ss_pred CccEEecccccCCchHHHHHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEccCCHHHHHHHHHHhhhh
Q 000053 1445 LSDIFNLRQNFRTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGE 1516 (2576)
Q Consensus 1445 ~~~~~~L~~NYRS~~~Il~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~~~~~~~i~~i~~~i~~ 1516 (2576)
....+.|++||||+++|+++.+.. ...++.. .. ...|..|.+..+.+..+++..++..+..
T Consensus 273 ~~~~~~L~~nyRs~~~il~~i~~~----~~~~~~~--~~-----~~~~~~i~i~~~~~~~~Ea~~ia~~I~~ 333 (1166)
T 3u4q_B 273 ITYKELSGTERHTKTPELAHLEAQ----YEARPAI--PY-----AEKQEALTVMQAANRRAELEGIAREIHA 333 (1166)
T ss_dssp EEEEEECSCSTTTTCHHHHHHHHS----SSCSSCC--CC-----CSCCSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred cccceecCCCCCCCCHHHHHHHHh----HhhcCCC--cc-----CCCCCCeEEEEcCChHHHHHHHHHHHHH
Confidence 346789999999999998754332 1111111 00 1135667777777777776666665543
No 11
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.91 E-value=4.8e-24 Score=279.26 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=64.1
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCC
Q 000053 1366 DEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQL 1445 (2576)
Q Consensus 1366 ~~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~ 1445 (2576)
.++++|+|||+||+++.++..|..+... +..+++|||++|.++.+.+..+..+..++ ..+.
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~~-~~~~~~vGD~~Ql~~v~~g~~~~~l~~~~------------------~~~~ 187 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTIPP-WCTIIGIGDNKQIRPVDPGENTAYISPFF------------------THKD 187 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHSCT-TCEEEEEECTTSCCCCCTTSCSCCCCGGG------------------TCTT
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhccC-CCEEEEECCHHHcCCccCCcchHhHHHHH------------------hcCC
Confidence 4689999999999999999988877763 56899999999966543322111111111 1124
Q ss_pred ccEEecccccCCchHHHHHHHHHHH
Q 000053 1446 SDIFNLRQNFRTHVGVLNLAQSIIE 1470 (2576)
Q Consensus 1446 ~~~~~L~~NYRS~~~Il~lAn~vi~ 1470 (2576)
...+.|++|||++++|+++|+.+..
T Consensus 188 ~~~~~L~~~~R~~~~I~~~a~~lr~ 212 (459)
T 3upu_A 188 FYQCELTEVKRSNAPIIDVATDVRN 212 (459)
T ss_dssp EEEEECCCCCCCCCHHHHHHHHHHT
T ss_pred CcEEeceeeeeCCcHHHHHHHHHHc
Confidence 5688999999999999999999964
No 12
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6e-23 Score=282.63 Aligned_cols=223 Identities=14% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCc--cccCCCcchhhH-HHHHHHhhhhhccCCCCCCccc
Q 000053 1365 GDEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQT--IARGIDFRFQDI-RSLFYKKFVLESRNNGNDGRQE 1441 (2576)
Q Consensus 1365 ~~~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QS--Iy~g~~frf~~l-~~~f~~~f~~~~~~~~~~~~~~ 1441 (2576)
...||+|+|||+||++..+ .++..+.. ..++++|||++|- ++........++ .++|.+-.
T Consensus 515 ~~~fd~viIDEA~q~~e~~-~li~l~~~--~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~-------------- 577 (802)
T 2xzl_A 515 DTKFRTVLIDESTQASEPE-CLIPIVKG--AKQVILVGDHQQLGPVILERKAADAGLKQSLFERLI-------------- 577 (802)
T ss_dssp CSCCSEEEETTGGGSCHHH-HHHHHTTT--BSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHH--------------
T ss_pred hccCCEEEEECccccchHH-HHHHHHhC--CCEEEEEeCccccCCeechhhhhhcCCchhHHHHHH--------------
Confidence 3489999999999999887 34444332 3689999999993 221100000000 11221111
Q ss_pred ccCCccEEecccccCCchHHHHHHHHHHHHHhcc-CCCCccccCCc--ccccCCCCCEEEccC-------------CHHH
Q 000053 1442 KRQLSDIFNLRQNFRTHVGVLNLAQSIIELLYRF-FPHSVDILKPE--TSLIYGEPPILLESG-------------DEEN 1505 (2576)
Q Consensus 1442 ~~~~~~~~~L~~NYRS~~~Il~lAn~vi~~~~~~-~p~~~~~l~~~--~~~~~G~~P~l~~~~-------------~~~~ 1505 (2576)
..+...+.|++|||+|+.|++++|.++-...-. .+......... .....+..|.++... ....
T Consensus 578 -~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~~~~~~~~~s~~N~~ 656 (802)
T 2xzl_A 578 -SLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRI 656 (802)
T ss_dssp -HTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECCCCCEECTTSSSEECHH
T ss_pred -hcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcCCceeecCCCCCcCCHH
Confidence 012234789999999999999999887311100 00000000000 000113344443210 1244
Q ss_pred HHHHHHHhhhhhcCCcccCCccEEEEEechhhHHHHHHHhC----------CCeEEEeeeccCCccccEEEEeecccCCC
Q 000053 1506 AILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVG----------KQALVLTIVESKGLEFQDVLLYKFFSASP 1575 (2576)
Q Consensus 1506 ~i~~i~~~i~~~~~~~i~~~~~~aILvr~~~~~~~l~~~L~----------~~V~V~TIH~aKGLEFd~ViL~n~f~~~p 1575 (2576)
++..+...+......++. ..+++||++.+.+...+.+.+. ..+.|.|+|.+||+|+|+||+..+.+..
T Consensus 657 EA~~V~~~v~~L~~~g~~-~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~- 734 (802)
T 2xzl_A 657 EAMNCERIITKLFRDGVK-PEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANE- 734 (802)
T ss_dssp HHHHHHHHHHHHHHTTCC-GGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCT-
T ss_pred HHHHHHHHHHHHHHcCCC-cccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCC-
Confidence 555555555544333332 3579999999999888887663 3689999999999999999996321110
Q ss_pred CchhhHHHHhhhccccccCCCCCCCCCCchhhhccchhHHHhhHhhhhccccceeEEEEecCC
Q 000053 1576 LKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEE 1638 (2576)
Q Consensus 1576 ~~~~w~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~~~ 1638 (2576)
.. ....-.+.|+||||+||||+.|+|+++...
T Consensus 735 ----------------------~~---------~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~ 766 (802)
T 2xzl_A 735 ----------------------QQ---------AIGFLRDPRRLNVGLTRAKYGLVILGNPRS 766 (802)
T ss_dssp ----------------------TC---------CCGGGGCHHHHHHHHSSEEEEEEEEECHHH
T ss_pred ----------------------CC---------CcccccCccceeeeHhhhhCeEEEEECHHH
Confidence 00 001124578999999999999999987653
No 13
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.88 E-value=2.1e-22 Score=276.71 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=128.7
Q ss_pred CCCccEEEEecC-CCCCHHHHHHHHHHhhcCCCcEEEEeCCCCc---cccCCCcchhhH-HHHHHHhhhhhccCCCCCCc
Q 000053 1365 GDEFHFVYIDEV-QDLTMSQVALFKYVCKNIEEGFVFSGDTAQT---IARGIDFRFQDI-RSLFYKKFVLESRNNGNDGR 1439 (2576)
Q Consensus 1365 ~~~yd~IlVDE~-QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QS---Iy~g~~frf~~l-~~~f~~~f~~~~~~~~~~~~ 1439 (2576)
...||+|+|||+ |++.+. .++..+.. ..++++|||++|. |+...+ ...++ .++|.+-..
T Consensus 513 ~~~fd~viIDEAsQ~~e~~--~li~l~~~--~~~~ilvGD~~QLpPvv~s~~a-~~~gl~~SlFerL~~----------- 576 (800)
T 2wjy_A 513 KMQFRSILIDESTQATEPE--CMVPVVLG--AKQLILVGDHCQLGPVVMCKKA-AKAGLSQSLFERLVV----------- 576 (800)
T ss_dssp TCCCSEEEETTGGGSCHHH--HHHHHTTT--BSEEEEEECTTSCCCCCCCHHH-HHTTTTSCHHHHHHH-----------
T ss_pred cCCCCEEEEECCCCCCcHH--HHHHHHhc--CCeEEEecccccCCCeecchhh-hhcCcchHHHHHHHh-----------
Confidence 457999999999 776554 23433332 3579999999994 321000 00000 122322110
Q ss_pred ccccCCccEEecccccCCchHHHHHHHHHHHHHh-ccCCCCccccCC--cccccCCCCCEEEccC-------------CH
Q 000053 1440 QEKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLY-RFFPHSVDILKP--ETSLIYGEPPILLESG-------------DE 1503 (2576)
Q Consensus 1440 ~~~~~~~~~~~L~~NYRS~~~Il~lAn~vi~~~~-~~~p~~~~~l~~--~~~~~~G~~P~l~~~~-------------~~ 1503 (2576)
.+...+.|++|||+|++|++++|.++-... ...+...+.... ......+..|.++... ..
T Consensus 577 ----~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~e~~~~~~~S~~N 652 (800)
T 2wjy_A 577 ----LGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLN 652 (800)
T ss_dssp ----TTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECCCCCEECSSBSCEEC
T ss_pred ----CCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcCCceeecCCCCcccC
Confidence 112347899999999999999998863110 000000000000 0000123344443211 12
Q ss_pred HHHHHHHHHhhhhhcCCcccCCccEEEEEechhhHHHHHHHhC----------CCeEEEeeeccCCccccEEEEeecccC
Q 000053 1504 ENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVG----------KQALVLTIVESKGLEFQDVLLYKFFSA 1573 (2576)
Q Consensus 1504 ~~~i~~i~~~i~~~~~~~i~~~~~~aILvr~~~~~~~l~~~L~----------~~V~V~TIH~aKGLEFd~ViL~n~f~~ 1573 (2576)
..++..+...+......++. ..+++||++.+.+...+.+.+. ..+.|.|+|++||+|||+||+..+.+.
T Consensus 653 ~~Ea~~V~~~v~~L~~~g~~-~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~ 731 (800)
T 2wjy_A 653 RTEAANVEKITTKLLKAGAK-PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 731 (800)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCC-cccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCC
Confidence 34455555555443333332 2579999999998888877663 468999999999999999999732111
Q ss_pred CCCchhhHHHHhhhccccccCCCCCCCCCCchhhhccchhHHHhhHhhhhccccceeEEEEecCC
Q 000053 1574 SPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEE 1638 (2576)
Q Consensus 1574 ~p~~~~w~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~~~ 1638 (2576)
. ... -..-.++|+||||+||||+.|+|+++...
T Consensus 732 ~-----------------------~~~---------~gfl~d~rrLNVAlTRAk~~LiIvG~~~~ 764 (800)
T 2wjy_A 732 E-----------------------HQG---------IGFLNDPRRLNVALTRARYGVIIVGNPKA 764 (800)
T ss_dssp C-----------------------CCC---------CGGGTCHHHHHHHHTSEEEEEEEEECHHH
T ss_pred C-----------------------ccc---------cccccCcchhhhhHHhhhccEEEEECHHH
Confidence 0 000 01123578999999999999999987643
No 14
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.87 E-value=1.3e-21 Score=264.97 Aligned_cols=220 Identities=16% Similarity=0.110 Sum_probs=128.7
Q ss_pred CCCccEEEEecC-CCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhH-----HHHHHHhhhhhccCCCCCC
Q 000053 1365 GDEFHFVYIDEV-QDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDI-----RSLFYKKFVLESRNNGNDG 1438 (2576)
Q Consensus 1365 ~~~yd~IlVDE~-QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l-----~~~f~~~f~~~~~~~~~~~ 1438 (2576)
...||+|+|||+ |++.+.. ++..+. . ..++++|||++|.-.. -..+... .++|.+-..
T Consensus 337 ~~~fd~viIDEAsQ~~e~~~--li~l~~-~-~~~~ilvGD~~QL~p~--v~~~~~~~~gl~~Slferl~~---------- 400 (624)
T 2gk6_A 337 KMQFRSILIDESTQATEPEC--MVPVVL-G-AKQLILVGDHCQLGPV--VMCKKAAKAGLSQSLFERLVV---------- 400 (624)
T ss_dssp TCCCSEEEETTGGGSCHHHH--HHHHTT-T-BSEEEEEECTTSCCCC--CSCHHHHHHTTTSCHHHHHHH----------
T ss_pred cCCCCEEEEecccccCcHHH--HHHHHh-c-CCeEEEecChhccCCe--eecHHHHHcCCchhHHHHHHh----------
Confidence 468999999999 7876642 333222 2 3579999999995211 0111111 122322110
Q ss_pred cccccCCccEEecccccCCchHHHHHHHHHHHHHh-ccCCCCccccCCc--ccccCCCCCEEEccC-------------C
Q 000053 1439 RQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLY-RFFPHSVDILKPE--TSLIYGEPPILLESG-------------D 1502 (2576)
Q Consensus 1439 ~~~~~~~~~~~~L~~NYRS~~~Il~lAn~vi~~~~-~~~p~~~~~l~~~--~~~~~G~~P~l~~~~-------------~ 1502 (2576)
.+...+.|++|||+|++|++++|.++-... ...+...+..... .....+..|.+.... .
T Consensus 401 -----~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~ 475 (624)
T 2gk6_A 401 -----LGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYL 475 (624)
T ss_dssp -----TTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCE
T ss_pred -----cCCCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCcc
Confidence 012347899999999999999998863110 0000000000000 000123345443211 1
Q ss_pred HHHHHHHHHHhhhhhcCCcccCCccEEEEEechhhHHHHHHHhC----------CCeEEEeeeccCCccccEEEEeeccc
Q 000053 1503 EENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVG----------KQALVLTIVESKGLEFQDVLLYKFFS 1572 (2576)
Q Consensus 1503 ~~~~i~~i~~~i~~~~~~~i~~~~~~aILvr~~~~~~~l~~~L~----------~~V~V~TIH~aKGLEFd~ViL~n~f~ 1572 (2576)
...++..+...+......++. ..+++||++.+.+...+.+.+. ..+.|.|+|++||+|||+||+..+.+
T Consensus 476 N~~Ea~~v~~~v~~l~~~g~~-~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs 554 (624)
T 2gk6_A 476 NRTEAANVEKITTKLLKAGAK-PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA 554 (624)
T ss_dssp EHHHHHHHHHHHHHHHTTTCC-GGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHcCCC-CCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecC
Confidence 244555555555444333332 3579999999998888877663 36899999999999999999973311
Q ss_pred CCCCchhhHHHHhhhccccccCCCCCCCCCCchhhhccchhHHHhhHhhhhccccceeEEEEecCC
Q 000053 1573 ASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEE 1638 (2576)
Q Consensus 1573 ~~p~~~~w~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~~~ 1638 (2576)
.. ... -..-.++|+||||+||||+.|+|+++...
T Consensus 555 ~~-----------------------~~~---------~gfl~~~~rlnVAlTRAk~~L~ivg~~~~ 588 (624)
T 2gk6_A 555 NE-----------------------HQG---------IGFLNDPRRLNVALTRARYGVIIVGNPKA 588 (624)
T ss_dssp -------------------------------------CCTTTCHHHHHHHTTSEEEEEEEEECHHH
T ss_pred CC-----------------------CCC---------ccccCCcceeeeehhhhhCcEEEEECHHH
Confidence 10 000 00113578999999999999999987643
No 15
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.85 E-value=2.3e-21 Score=264.14 Aligned_cols=224 Identities=16% Similarity=0.180 Sum_probs=128.2
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCC--CcchhhHH-HHHHHhhhhhccCCCCCCccc
Q 000053 1365 GDEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGI--DFRFQDIR-SLFYKKFVLESRNNGNDGRQE 1441 (2576)
Q Consensus 1365 ~~~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~--~frf~~l~-~~f~~~f~~~~~~~~~~~~~~ 1441 (2576)
...||+|+|||+...++.+.-+ .|.. ..++++|||++|-...-. ...+.++. ++|.+ +. .
T Consensus 364 ~~~Fd~vIIDEAsQ~~e~~~li--pL~~--~~~~ILVGD~~QLpP~v~~~~a~~~gl~~Slfer-L~------------~ 426 (646)
T 4b3f_X 364 ESYFDVVVIDECAQALEASCWI--PLLK--ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMER-LA------------E 426 (646)
T ss_dssp TTCCSEEEETTGGGSCHHHHTT--TGGG--SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHH-HH------------H
T ss_pred hccCCEEEEcCccccchHHHHh--hccc--cceEEEcCCccccCceecchhhhhccccchHHHH-HH------------H
Confidence 4679999999997777766422 2333 357999999999321000 00111111 11111 10 0
Q ss_pred ccCCccEEecccccCCchHHHHHHHHHHHHHh-ccCCC----CccccCCcccccCCCCCEEEc-c---------------
Q 000053 1442 KRQLSDIFNLRQNFRTHVGVLNLAQSIIELLY-RFFPH----SVDILKPETSLIYGEPPILLE-S--------------- 1500 (2576)
Q Consensus 1442 ~~~~~~~~~L~~NYRS~~~Il~lAn~vi~~~~-~~~p~----~~~~l~~~~~~~~G~~P~l~~-~--------------- 1500 (2576)
..++.....|++|||+|+.|++++|..+-... ...+. ....++..........|.+.. .
T Consensus 427 ~~~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s 506 (646)
T 4b3f_X 427 EYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQS 506 (646)
T ss_dssp HHGGGTEEECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----C
T ss_pred hcCCceeeecccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCcc
Confidence 01233456799999999999999998862110 00000 000011111111122333321 1
Q ss_pred CCHHHHHHHHHHhhhhhcCCcccCCccEEEEEechhhHHHHHHHhC---CCeEEEeeeccCCccccEEEEeecccCCCCc
Q 000053 1501 GDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVG---KQALVLTIVESKGLEFQDVLLYKFFSASPLK 1577 (2576)
Q Consensus 1501 ~~~~~~i~~i~~~i~~~~~~~i~~~~~~aILvr~~~~~~~l~~~L~---~~V~V~TIH~aKGLEFd~ViL~n~f~~~p~~ 1577 (2576)
.....++..+...+......++. ..+++||++...+...+.+.+. ..+.|.|||++.|.|+|+||+- +--+.
T Consensus 507 ~~N~~EA~~V~~~v~~L~~~gv~-~~dIgVItpYraQ~~~l~~~l~~~~~~i~v~TVd~fQG~E~dvII~S-~vrsn--- 581 (646)
T 4b3f_X 507 KGNPGEVRLVSLHIQALVDAGVP-ARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDGFQGREKEAVILS-FVRSN--- 581 (646)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCC-GGGEEEEESCHHHHHHHHHHHTTTCTTCEEEEGGGGTTCCEEEEEEE-CCCCC---
T ss_pred ccCHHHHHHHHHHHHHHHhcCCC-cCcEEEECCCHHHHHHHHHHHHHhCCCCEECChhhcccccCCEEEEE-eccCC---
Confidence 11234555555555443333332 3578999999999999988885 4699999999999999999884 11100
Q ss_pred hhhHHHHhhhccccccCCCCCCCCCCchhhhccchhHHHhhHhhhhccccceeEEEEecCC
Q 000053 1578 NQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEE 1638 (2576)
Q Consensus 1578 ~~w~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~~~ 1638 (2576)
..+. ..| + .+.|.|+||+||||+.|+|+++...
T Consensus 582 -------------------~~~~-iGF-------l-~~~rRlNVAlTRAk~~liivGn~~~ 614 (646)
T 4b3f_X 582 -------------------RKGE-VGF-------L-AEDRRINVAVTRARRHVAVICDSRT 614 (646)
T ss_dssp -------------------TTCC-CCS-------T-TCHHHHHHHHHTEEEEEEEEECHHH
T ss_pred -------------------CCCC-ccc-------c-CCcCcEEeEhhhhhCeEEEEEchHH
Confidence 0000 001 1 2357899999999999999987643
No 16
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.85 E-value=5e-22 Score=264.88 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=129.2
Q ss_pred CCCEEEEEcCCCCChhHHhhhcc-ccCcceEEEecCCCCCCccccccchhhhhccccHHHHHhhccCCccccccccccC-
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQ-LSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMH- 655 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~-l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~g~~~~~L~~qYRmh- 655 (2576)
++|+||||||+|+....+...+. ++...++|+|||+.||||+..+ +.|..+.. ..+.+.|+++||++
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~~~ 347 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQAA 347 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHHHH
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeCCC
Confidence 58999999999999876544443 3456799999999999998643 35566655 67899999999998
Q ss_pred -cccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHHhcccC
Q 000053 656 -PSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWIN 734 (2576)
Q Consensus 656 -p~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~ 734 (2576)
+.|..+.+. +..|.+.... ..+.|+.... .+ ..+..+.+++. +.
T Consensus 348 ~s~I~~~a~~-i~~g~~~~~~-----------------~d~~~~~~~~-~~----------~~~~~i~~~~~-----~~- 392 (574)
T 3e1s_A 348 KNPIIQAAHG-LLHGEAPAWG-----------------DKRLNLTEIE-PD----------GGARRVALMVR-----EL- 392 (574)
T ss_dssp TCHHHHHHHH-HHTTCCCCCC-----------------BTTEEEEECC-ST----------TCHHHHHHHHH-----HT-
T ss_pred ccHHHHHHHH-HhCCCCcccC-----------------CCeEEEeCCC-HH----------HHHHHHHHHHh-----cc-
Confidence 668887664 3344322110 2334544311 11 01233444433 11
Q ss_pred CCCCCeEEEEcccHHH---HHHHHHHhccccccC-----------------------------C----------CCce--
Q 000053 735 SKEKLSIGIVSPYIAQ---VAAIQEKLGSKYVNS-----------------------------A----------GFAV-- 770 (2576)
Q Consensus 735 ~~~~~sIgIITPY~aQ---v~~I~~~L~~~~~~~-----------------------------~----------~~~v-- 770 (2576)
.+..++.|+||.+.. +..+...+++.+... + ...+
T Consensus 393 -~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v 471 (574)
T 3e1s_A 393 -GGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTV 471 (574)
T ss_dssp -TSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEE
T ss_pred -CcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEE
Confidence 123578888887643 343333332211000 0 0001
Q ss_pred --------------------EEccCCCCCCccCCEEEEEcccCCCCCccccCCCCCceEEecccccccEEEEechhhhh
Q 000053 771 --------------------KVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLT 829 (2576)
Q Consensus 771 --------------------~V~TVd~fQG~E~DiVIlS~Vrs~~~~~~gFl~d~~RlNVAlTRAR~~LiIVGn~~~L~ 829 (2576)
.+.|||++||+|+|.||+..+... ..+.+++++|||+||||+.++|+|+...|.
T Consensus 472 ~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 472 DFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred EECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 135999999999999999987553 236689999999999999999999977653
No 17
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.83 E-value=7.5e-20 Score=243.95 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCC
Q 000053 1366 DEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQL 1445 (2576)
Q Consensus 1366 ~~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~ 1445 (2576)
..+|+|+|||+|+++..++..|...... +..+++|||++|..+.+.|.-|.++.. .
T Consensus 278 ~~~dvlIIDEasml~~~~~~~Ll~~~~~-~~~lilvGD~~QL~~v~~g~~~~~l~~-----------------------~ 333 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAVPP-GARVLLVGDTDQLPPVDAGLPLLALAQ-----------------------A 333 (574)
T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTSCT-TCEEEEEECTTSCCCSSSCCHHHHHHH-----------------------H
T ss_pred ccCCEEEEcCccCCCHHHHHHHHHhCcC-CCEEEEEecccccCCccCCcHHHHHHh-----------------------c
Confidence 3689999999999999887766554443 567999999999887766655554432 1
Q ss_pred ccEEecccccCCc--hHHHHHHHHHHH
Q 000053 1446 SDIFNLRQNFRTH--VGVLNLAQSIIE 1470 (2576)
Q Consensus 1446 ~~~~~L~~NYRS~--~~Il~lAn~vi~ 1470 (2576)
...+.|++|||++ +.|+.+|+.+..
T Consensus 334 ~~~~~L~~~~R~~~~s~I~~~a~~i~~ 360 (574)
T 3e1s_A 334 APTIKLTQVYRQAAKNPIIQAAHGLLH 360 (574)
T ss_dssp SCEEECCCCCHHHHTCHHHHHHHHHHT
T ss_pred CCEEEcceeEeCCCccHHHHHHHHHhC
Confidence 3468899999998 679999998864
No 18
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.77 E-value=4.4e-19 Score=238.96 Aligned_cols=239 Identities=20% Similarity=0.170 Sum_probs=115.0
Q ss_pred CCCEEEEEcCCCCChhHHhhhcc-ccCcceEEEecCCCCCCccccccchh------hhhccccHHHHHhhcc--------
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQ-LSGIKHAVLFGDECQLPAMVESKVSD------EACFGRSLFERLSHLR-------- 642 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~-l~~~k~vILVGD~~QLpPvv~s~~~~------~~~~~~SLfeRL~~~g-------- 642 (2576)
++|+||||||+|+....+...+. ++...++||+||+.||||+..+..-. ..++..+.++++....
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~ 341 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCS
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccccc
Confidence 68999999999999775433332 45568999999999999997654321 3467778888876531
Q ss_pred ---CC-----ccccccccccCcc--cccccccccccCcccC----------------Cccccc---------ccccc---
Q 000053 643 ---HS-----KHLLSIQYRMHPS--ISFFPNSYFYENKIHD----------------SPTVEK---------RSYEK--- 684 (2576)
Q Consensus 643 ---~~-----~~~L~~qYRmhp~--I~~f~n~~fY~g~L~~----------------~~~~~~---------~~~~~--- 684 (2576)
.+ .+.|+++||++++ |..+.+.. ..|.... ...... ..+..
T Consensus 342 ~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (608)
T 1w36_D 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 (608)
T ss_dssp TTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHH
Confidence 12 5789999999877 77665432 2221110 000000 00000
Q ss_pred ----ccCCCCC---CCCcEE-EEccCCccccccccccCHH---------------HH-HHHHHHHHHHHhcccCCCCCCe
Q 000053 685 ----RFLPGPM---YGPYSF-INVFGGREEFIEHSCRNMV---------------EV-SVVMKILLNLYKGWINSKEKLS 740 (2576)
Q Consensus 685 ----~~~~~~~---~~~~~f-idv~~g~e~~~~~S~~N~~---------------Ea-~~v~~lv~~L~~~~~~~~~~~s 740 (2576)
...|... ...+.. .....|.-. ....|.. +. -.+-+-|....+.+.....+++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~vL~~~~~g~~g---v~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~~~Nd~~~gl~NGd 497 (608)
T 1w36_D 421 LLQARAEPDLIIQAFNEYQLLCALREGPFG---VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 (608)
T ss_dssp HHHTCCCSSTTHHHHTTEEEEESCSSSSSS---HHHHHHHHHGGGTSCC-------------------------------
T ss_pred HhhcccCHHHHHHHHhhhhhhCCccCCchh---HHHHHHHHHHHhCccCcccccccccccCCCeeeEeeechhhcccCCC
Confidence 0000000 001111 111111110 0001100 00 0011111112222222345678
Q ss_pred EEEEcccHHHHHHHHHHhc---c---ccc--cC-CCCceEEccCCCCCCccCCEEEEEcccCCCCCccccCCCCCceEEe
Q 000053 741 IGIVSPYIAQVAAIQEKLG---S---KYV--NS-AGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVA 811 (2576)
Q Consensus 741 IgIITPY~aQv~~I~~~L~---~---~~~--~~-~~~~v~V~TVd~fQG~E~DiVIlS~Vrs~~~~~~gFl~d~~RlNVA 811 (2576)
||+|++...+ +.-.+. . .+. .. ......+.|||++||.|+|.||+....... ...+++.+|||
T Consensus 498 iG~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva 569 (608)
T 1w36_D 498 IGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTA 569 (608)
T ss_dssp ----------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHH
T ss_pred eEEEEEcCCe---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhHHhh
Confidence 9999987522 111111 0 000 01 112467889999999999999998754432 14478999999
Q ss_pred cccccccEEEEechhhh
Q 000053 812 LTRARHCLWILGNERTL 828 (2576)
Q Consensus 812 lTRAR~~LiIVGn~~~L 828 (2576)
+||||+.++|+|+...|
T Consensus 570 ~tRa~~~l~l~~~~~~l 586 (608)
T 1w36_D 570 VTRARRRLSLYADERIL 586 (608)
T ss_dssp HTTBSSCEEEECCTTHH
T ss_pred hhhhhceEEEEECHHHH
Confidence 99999999999986543
No 19
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.77 E-value=5e-18 Score=232.21 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=98.3
Q ss_pred CCCEEEEEcCCCCChhHHhhhcccc-CcceEEEecCCCCCCccccccchhhhhccccHHHHHhhc--cCCcccccccccc
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQLS-GIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL--RHSKHLLSIQYRM 654 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~l~-~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~--g~~~~~L~~qYRm 654 (2576)
.|++|+|||+++++..+..+...+. ..+++++|||++|--. ...|.....|.++... +...+.|+++||+
T Consensus 213 ~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~QsIy-------~frga~~~~~~~~~~~~~~~~~~~L~~nyRs 285 (647)
T 3lfu_A 213 RFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIY-------GWRGAQVENIQRFLNDFPGAETIRLEQNYRS 285 (647)
T ss_dssp HCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGCCC-------GGGTCCTTHHHHHHHHCTTCEEEEECBCSSS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhhhc-------cccCCCHHHHHHHHHhCCCCeEEEcccCCCC
Confidence 4899999999999988765554433 4579999999999321 1122334455555442 3456899999999
Q ss_pred CcccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHHhcccC
Q 000053 655 HPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWIN 734 (2576)
Q Consensus 655 hp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~ 734 (2576)
+|.|..++|..|+.+.......... ..+...++.++.. .....|+..|.+.+..+++.+
T Consensus 286 ~~~I~~~~n~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~~~~e~~~ia~~I~~l~~~g-- 344 (647)
T 3lfu_A 286 TSNILSAANALIENNNGRLGKKLWT--------DGADGEPISLYCA-----------FNELDEARFVVNRIKTWQDNG-- 344 (647)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCBC--------SSCCCCCEEEEEE-----------EEHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHhcccccCCcccc--------CCCCCCceEEEec-----------CChHHHHHHHHHHHHHHHHcC--
Confidence 9999999999988754322111100 0011123334333 123578999999999988764
Q ss_pred CCCCCeEEEEcccHHHHHHHH
Q 000053 735 SKEKLSIGIVSPYIAQVAAIQ 755 (2576)
Q Consensus 735 ~~~~~sIgIITPY~aQv~~I~ 755 (2576)
.+..+|+||+|++.|...|.
T Consensus 345 -~~~~diaVL~r~~~~~~~l~ 364 (647)
T 3lfu_A 345 -GALAECAILYRSNAQSRVLE 364 (647)
T ss_dssp -CCGGGEEEEESSGGGHHHHH
T ss_pred -CCccCEEEEEeCchhHHHHH
Confidence 36689999999987764443
No 20
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.73 E-value=3.7e-18 Score=223.57 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCCChhHHhhhcc-ccCcceEEEecCCCCCCccccccchhhhhccccHHHHHhhccCCccccccccccCc
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQ-LSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHP 656 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~-l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~g~~~~~L~~qYRmhp 656 (2576)
.+++||||||+++........+. +.+..++++|||+.||||+..+..... + ..++. ..+.+.+.|+++||+++
T Consensus 128 ~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~--l-~~~~~---~~~~~~~~L~~~~R~~~ 201 (459)
T 3upu_A 128 KCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAY--I-SPFFT---HKDFYQCELTEVKRSNA 201 (459)
T ss_dssp SCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCC--C-CGGGT---CTTEEEEECCCCCCCCC
T ss_pred CCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHh--H-HHHHh---cCCCcEEeceeeeeCCc
Confidence 58999999999998665444433 234679999999999999876431110 0 11111 12457889999999999
Q ss_pred ccccccccccc
Q 000053 657 SISFFPNSYFY 667 (2576)
Q Consensus 657 ~I~~f~n~~fY 667 (2576)
.|.++.+...-
T Consensus 202 ~I~~~a~~lr~ 212 (459)
T 3upu_A 202 PIIDVATDVRN 212 (459)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999987643
No 21
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.71 E-value=1.5e-17 Score=211.02 Aligned_cols=200 Identities=19% Similarity=0.168 Sum_probs=128.7
Q ss_pred CCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhhcccc-HHHHHhhccCCccccccccccCc
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRS-LFERLSHLRHSKHLLSIQYRMHP 656 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~S-LfeRL~~~g~~~~~L~~qYRmhp 656 (2576)
++|+||||||+|++...+...+.+.+++++|++||++||||+...+. +... -|.++.. .....++.+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~~~~~~l~~--~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTG-----FPYPAHFAKLEV--DEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCSTT-----CCCCHHHHSCCC--SEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCCC-----ccchhhhhhccc--CcEEEeeeEeCCCH
Confidence 48999999999999777655555556699999999999999965432 1110 1222221 13456889999999
Q ss_pred ccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHHhcccCCC
Q 000053 657 SISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSK 736 (2576)
Q Consensus 657 ~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~ 736 (2576)
.++.+.+.. |++++...... ...+.+..+.+. ... +. ...
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~--------------~~sv~~~~I~~~-~~~------~~------------------~~~ 346 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE--------------KKSVSQEMVSGA-ASI------NP------------------VSK 346 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC--------------CCCEEEEECCCG-GGC------CT------------------TTS
T ss_pred HHHHHHHhh-cCCceEECCCc--------------CceEEEeccccc-ccc------cc------------------ccC
Confidence 999999975 87765422111 223444444211 100 00 000
Q ss_pred CCCeEEEEcccHHHHHHHHHHhccccccCCCCceE-EccCCCCCCccCCEEEEEcccCCCCCccccCCCCCceEEecccc
Q 000053 737 EKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVK-VMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRA 815 (2576)
Q Consensus 737 ~~~sIgIITPY~aQv~~I~~~L~~~~~~~~~~~v~-V~TVd~fQG~E~DiVIlS~Vrs~~~~~~gFl~d~~RlNVAlTRA 815 (2576)
+. .--|||+..+....+.+. .+. +.|||++||.|+|.|.+....+. ....|..++.+++||+|||
T Consensus 347 ~~-~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtlvr~~~~--~~~l~~~~~~~~~VALTRh 412 (446)
T 3vkw_A 347 PL-KGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSLVRLTPT--PVSIIARDSPHVLVSLSRH 412 (446)
T ss_dssp CC-CSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEEEECCCS--CCTTCSTTCHHHHHHHSSE
T ss_pred CC-CCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEEEECCCC--CcccccCCccceEEEeecC
Confidence 11 225678887777776642 123 78999999999999888543322 2233445788999999999
Q ss_pred cccEEEEechhhhhcCchHHHHHHHHHHh
Q 000053 816 RHCLWILGNERTLTRNRSVWKALVDDAKA 844 (2576)
Q Consensus 816 R~~LiIVGn~~~L~~~~~~W~~li~~~~~ 844 (2576)
|+.|.++.-. +..|-..|.++..
T Consensus 413 ~~~L~~~tv~------~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 413 TKSLKYYTVV------MDPLVSIIRDLER 435 (446)
T ss_dssp EEEEEEEESS------CCHHHHHHHHHHH
T ss_pred CCEEEEEEec------CChHHHHHHHhhh
Confidence 9999998531 3456666666543
No 22
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.70 E-value=3.3e-17 Score=186.42 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=104.2
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEccCCHHHHHHHHHHhhhhhcCCcccCCccEEEE
Q 000053 1452 RQNFRTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEVGGNMVGFGAEQVIL 1531 (2576)
Q Consensus 1452 ~~NYRS~~~Il~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~~~~~~~i~~i~~~i~~~~~~~i~~~~~~aIL 1531 (2576)
++||||+++|+++||.++.... . . ......|++|.+..+.+..+++..+.+.+.. ...+ ..+++||
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-------~-~--~~~~~~G~~p~~~~~~~~~~e~~~i~~~I~~-~~~g---~~~iAVL 67 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-------A-V--TAFDRQGDLPNVVVTPNFEAGVDQVVDQLAM-NDSE---RDTTAII 67 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCCCCCEEEEESSHHHHHHHHHHHHHH-HHHT---TCCEEEE
T ss_pred CCCCCChHHHHHHHHHHhcCCC-------c-c--cCCCCCCCCCEEEEeCCHHHHHHHHHHHHHH-hccC---CCcEEEE
Confidence 5899999999999998874111 1 1 1113458999999999988888888888766 2222 3679999
Q ss_pred EechhhHHHHHHHhC-----------------CCeEEEeeeccCCccccEEEEeecccCCCCchhhHHHHhhhccccccC
Q 000053 1532 VRDDCVRKEISNYVG-----------------KQALVLTIVESKGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLD 1594 (2576)
Q Consensus 1532 vr~~~~~~~l~~~L~-----------------~~V~V~TIH~aKGLEFd~ViL~n~f~~~p~~~~w~~l~~~~~~~~l~~ 1594 (2576)
+|++.+...+.+.|. ++|.|+|+|.|||||||.|+|+++....
T Consensus 68 ~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~-------------------- 127 (174)
T 3dmn_A 68 GKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN-------------------- 127 (174)
T ss_dssp ESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT--------------------
T ss_pred ecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc--------------------
Confidence 999998888887763 3589999999999999999999553321
Q ss_pred CCCCCCCCCchhhhccchhHHHhhHhhhhccccceeEEEEecC
Q 000053 1595 STSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKE 1637 (2576)
Q Consensus 1595 ~~~~~~~~~~~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~~ 1637 (2576)
++. .+++|+||||||||++.|+|+..++
T Consensus 128 ------~~~---------~~~~~llYva~TRA~~~l~~~~~~~ 155 (174)
T 3dmn_A 128 ------YQR---------EDERQLLYTICSRAMHELTLVAVGS 155 (174)
T ss_dssp ------SCS---------GGGHHHHHHHHTTEEEEEEEEEESS
T ss_pred ------CCC---------hhhhceeEEEecCcccEEEEEeCCC
Confidence 010 3689999999999999999998753
No 23
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=3e-15 Score=205.37 Aligned_cols=144 Identities=15% Similarity=0.030 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCCChhHHhhhccccC-cceEEEecCCCCCCccccccchhhhhccccHHHHHhhc--cCCccccccccc
Q 000053 577 KPLNFLVIDEAAQLKESESTIPLQLSG-IKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL--RHSKHLLSIQYR 653 (2576)
Q Consensus 577 ~~fD~VIIDEAsQ~~e~e~lipL~l~~-~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~--g~~~~~L~~qYR 653 (2576)
..|++|+|||++.++..+.-+.-.+.+ ..++++|||++|--- .-.|.....|.++... +...+.|+++||
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~QsIy-------~frga~~~~~~~~~~~~~~~~~~~L~~nyR 278 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIY-------SWRGARPQNLVLLSQDFPALKVIKLEQNYR 278 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGCCC-------GGGTBCTTHHHHHHHHSTTCEEECCCCBSS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhhhh-------hccCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 469999999999999888655443333 468999999999421 1112223445555432 345689999999
Q ss_pred cCcccccccccccccCcccCCccccccccccccCCC-CCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHH-hc
Q 000053 654 MHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPG-PMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLY-KG 731 (2576)
Q Consensus 654 mhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~-~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~-~~ 731 (2576)
++|.|.++.|..|..+.-..... ..+. +...++.++.. .....|+..|+..+..+. ..
T Consensus 279 s~~~I~~~an~~~~~~~~~~~~~---------l~~~~~~g~~i~~~~~-----------~~~~~e~~~va~~I~~l~~~~ 338 (673)
T 1uaa_A 279 SSGRILKAANILIANNPHVFEKR---------LFSELGYGAELKVLSA-----------NNEEHEAERVTGELIAHHFVN 338 (673)
T ss_dssp SCHHHHHHHHHHHHTSCCSSCCC---------CCBSSCCCCCBEEEEC-----------SSHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhchhccccc---------ccccCCCCCCceEEec-----------CCHHHHHHHHHHHHHHHHhcc
Confidence 99999999998886543211100 0010 11123333332 113568888988888887 33
Q ss_pred ccCCCCCCeEEEEcccHHH
Q 000053 732 WINSKEKLSIGIVSPYIAQ 750 (2576)
Q Consensus 732 ~~~~~~~~sIgIITPY~aQ 750 (2576)
+ .+..+|+|+++.+.|
T Consensus 339 g---~~~~diaVL~r~~~~ 354 (673)
T 1uaa_A 339 K---TQYKDYAILYRGNHQ 354 (673)
T ss_dssp C---CCTTTEEEEESSSGG
T ss_pred C---CCccCEEEEEechhh
Confidence 3 355688888765443
No 24
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.60 E-value=8.5e-15 Score=197.38 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=62.6
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHH--------HHhhhhhccCCCCC
Q 000053 1366 DEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLF--------YKKFVLESRNNGND 1437 (2576)
Q Consensus 1366 ~~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f--------~~~f~~~~~~~~~~ 1437 (2576)
..+++|+|||++.++..++.-|....+. +..++++||++|-.+.+.|--|.++.... ..... ...+....
T Consensus 261 l~~d~lIIDEAsml~~~~~~~Ll~~l~~-~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~-~~~~~~~~ 338 (608)
T 1w36_D 261 LHLDVLVVDEASMIDLPMMSRLIDALPD-HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS-RLTGTHVP 338 (608)
T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTCCT-TCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHH-HHSSSCCC
T ss_pred CCCCEEEEechhhCCHHHHHHHHHhCCC-CCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHH-HhcCcccc
Confidence 3789999999999997765544333333 56899999999999876665555543210 00000 00000000
Q ss_pred Cccc-ccC--CccEEecccccCCchH--HHHHHHHHHH
Q 000053 1438 GRQE-KRQ--LSDIFNLRQNFRTHVG--VLNLAQSIIE 1470 (2576)
Q Consensus 1438 ~~~~-~~~--~~~~~~L~~NYRS~~~--Il~lAn~vi~ 1470 (2576)
.... ..+ ....+.|++|||++.+ |..+|+.+..
T Consensus 339 ~~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i~~ 376 (608)
T 1w36_D 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 (608)
T ss_dssp CCSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHHTS
T ss_pred cccccccccccccEEecceeeeeCCcchHHHHHHHHhc
Confidence 0000 000 1237899999999876 9999998853
No 25
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.60 E-value=6.3e-15 Score=203.10 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=95.1
Q ss_pred CCCEEEEEcCCCCChhHHhhhccccC-cceEEEecCCCCCCccccccchhhhhccccHHHHHhhc--cCCcccccccccc
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQLSG-IKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHL--RHSKHLLSIQYRM 654 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~l~~-~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~--g~~~~~L~~qYRm 654 (2576)
.|++|+|||++.++..+..+.-.+.+ ..++++|||+.|---- -.|.....+.++... +...+.|.++||+
T Consensus 216 rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~QsIY~-------fRGA~~~~~~~f~~~~~~~~~i~L~~NyRS 288 (724)
T 1pjr_A 216 KFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQSIYR-------WRGADIQNILSFERDYPNAKVILLEQNYRS 288 (724)
T ss_dssp HCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGCCCG-------GGTCCTHHHHTHHHHSTTCEEEEECBCSSS
T ss_pred hCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhhccc-------ccCCCHHHHHHHHHHCCCCcEEECCCCCCC
Confidence 58999999999999987655544433 3689999999994211 111122233333221 2356899999999
Q ss_pred CcccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHHhcccC
Q 000053 655 HPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWIN 734 (2576)
Q Consensus 655 hp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~ 734 (2576)
++.|.++.|..+.++.-....... ...+...++.++.. .....|+..|+..+..+....
T Consensus 289 t~~Il~~an~li~~n~~~~~k~l~--------~~~~~g~~i~~~~~-----------~~~~~Ea~~va~~I~~l~~~~-- 347 (724)
T 1pjr_A 289 TKRILQAANEVIEHNVNRKPKRIW--------TENPEGKPILYYEA-----------MNEADEAQFVAGRIREAVERG-- 347 (724)
T ss_dssp CHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEE-----------EEHHHHHHHHHHHHHHHHTTT--
T ss_pred CHHHHHHHHHHHHhCccccCcccc--------cccCCCCceEEEec-----------CCHHHHHHHHHHHHHHHHHhc--
Confidence 999999999888654322111100 00111123333332 113568888999888887621
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHh
Q 000053 735 SKEKLSIGIVSPYIAQVAAIQEKL 758 (2576)
Q Consensus 735 ~~~~~sIgIITPY~aQv~~I~~~L 758 (2576)
..+..+|+|+++.++|...|.+.|
T Consensus 348 g~~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 348 ERRYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp SCCGGGEEEEESSGGGHHHHHHHH
T ss_pred CCChhheeeeeecchhHHHHHHHH
Confidence 235678999999888766654433
No 26
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.48 E-value=5.6e-13 Score=169.45 Aligned_cols=187 Identities=17% Similarity=0.163 Sum_probs=109.8
Q ss_pred CccEEEEecCCCCCHHHHHHHHHHhhcCCCcEEEEeCCCCccccCCCcchhhHHHHHHHhhhhhccCCCCCCcccccCCc
Q 000053 1367 EFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLS 1446 (2576)
Q Consensus 1367 ~yd~IlVDE~QD~~~~ql~LL~~L~~~~~~~l~~vGD~~QSIy~g~~frf~~l~~~f~~~f~~~~~~~~~~~~~~~~~~~ 1446 (2576)
.++.|+|||++.+++.++..+..+.+. ..++++||++|.-|-+.+-.|..... +. . ....
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~--~~vilvGD~~Qlp~v~~~~~~~~~~~-~~-~----------------l~~~ 293 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLC--DIAYVYGDTQQIPYINRVTGFPYPAH-FA-K----------------LEVD 293 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTC--SEEEEEECTTSCCCCCCSTTCCCCHH-HH-S----------------CCCS
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCC--CEEEEecCcccccCcccCCCccchhh-hh-h----------------cccC
Confidence 489999999999999998877666543 78999999999876433211211111 10 0 0122
Q ss_pred cEEecccccCCchHHHHHHHHHHHHHhccCCCCccccCCcccccCCCCCEEEcc-CCHHHHHHHHHHhhhhhcCCcccCC
Q 000053 1447 DIFNLRQNFRTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLES-GDEENAILKIFGNTGEVGGNMVGFG 1525 (2576)
Q Consensus 1447 ~~~~L~~NYRS~~~Il~lAn~vi~~~~~~~p~~~~~l~~~~~~~~G~~P~l~~~-~~~~~~i~~i~~~i~~~~~~~i~~~ 1525 (2576)
....+..+||+++.++.+.+.+ |++.+....+ ......... .... .+. .....
T Consensus 294 ~~~~~~~SyR~p~dv~~lLs~l-------Y~~~V~t~s~------~~~sv~~~~I~~~~--------~~~---~~~~~-- 347 (446)
T 3vkw_A 294 EVETRRTTLRCPADVTHFLNQR-------YEGHVMCTSS------EKKSVSQEMVSGAA--------SIN---PVSKP-- 347 (446)
T ss_dssp EEEEECEESSCCHHHHHHHHTT-------SSSCCEECCC------CCCCEEEEECCCGG--------GCC---TTTSC--
T ss_pred cEEEeeeEeCCCHHHHHHHHhh-------cCCceEECCC------cCceEEEecccccc--------ccc---cccCC--
Confidence 4566899999999999987653 3322210000 111111110 0000 000 00000
Q ss_pred ccEEEEEechhhHHHHHHHhCCCeE-EEeeeccCCccccEEEEeecccCCCCchhhHHHHhhhccccccCCCCCCCCCCc
Q 000053 1526 AEQVILVRDDCVRKEISNYVGKQAL-VLTIVESKGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSF 1604 (2576)
Q Consensus 1526 ~~~aILvr~~~~~~~l~~~L~~~V~-V~TIH~aKGLEFd~ViL~n~f~~~p~~~~w~~l~~~~~~~~l~~~~~~~~~~~~ 1604 (2576)
..-.||+-+...+..+.+ .+.. ++|+|++.|+|||.|.++-.. ..+. +.
T Consensus 348 ~~g~iLtftq~~k~~L~~---~G~~~~~Tv~e~QG~tf~~Vtlvr~~------------------------~~~~--~l- 397 (446)
T 3vkw_A 348 LKGKILTFTQSDKEALLS---RGYADVHTVHEVQGETYADVSLVRLT------------------------PTPV--SI- 397 (446)
T ss_dssp CCSEEEESSHHHHHHHHT---TTCCSCEETGGGTTCCEEEEEEEECC------------------------CSCC--TT-
T ss_pred CCCeEEEcCHHHHHHHHH---hCCCCccCHHHcCCcccCeEEEEECC------------------------CCCc--cc-
Confidence 012467777766766665 3455 899999999999999997110 0000 00
Q ss_pred hhhhccchhHHHhhHhhhhccccceeEEEEec
Q 000053 1605 NEVKHNILCSELKQLYVAITRTRQRLWIWENK 1636 (2576)
Q Consensus 1605 ~~~~~~~l~eErRlLYVAiTRAr~~L~I~~s~ 1636 (2576)
+.+.+..+|||+||||+.|.++.-.
T Consensus 398 -------~~~~~~~~~VALTRh~~~L~~~tv~ 422 (446)
T 3vkw_A 398 -------IARDSPHVLVSLSRHTKSLKYYTVV 422 (446)
T ss_dssp -------CSTTCHHHHHHHSSEEEEEEEEESS
T ss_pred -------ccCCccceEEEeecCCCEEEEEEec
Confidence 0122457999999999999998643
No 27
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.41 E-value=4.6e-12 Score=183.67 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=54.8
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCC------eEEEEecChHHHHHHHHHHHHHHHh
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF------RTLVCTPTIVAIKELASRVVKLVKE 281 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~------rVLv~ApTN~AVd~V~~RL~~lv~e 281 (2576)
+-++.+.|... ....+|.|+||||||+|++..+..++..+. +||++++||.|..++.+|+.+.+.+
T Consensus 12 t~eQ~~~i~~~---~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 12 TDDQWNAIVST---GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp CHHHHHHHHCC---SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCC---CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 44555555443 457799999999999999999999998754 8999999999999999999987644
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.08 E-value=5.4e-09 Score=145.40 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=159.1
Q ss_pred hcCChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhH-HHHHHHHHHHHHHhHhhcCChHHHHHHH
Q 000053 1668 VASSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYW-EGRSKASGLKAAADRISSSNPLEARIIL 1746 (2576)
Q Consensus 1668 ~~ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~-~~l~~A~~l~~~a~~l~~~~~~~a~~~~ 1746 (2576)
.-.++.-|...|.. ++..|+|++|+.+|++|++... ..++.+ +.. .+.|
T Consensus 1101 rvn~p~vWsqLAKA---------------ql~~G~~kEAIdsYiKAdD~say~eVa~~------~~~---------lGky 1150 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKA---------------QLQKGMVKEAIDSYIKADDPSSYMEVVQA------ANT---------SGNW 1150 (1630)
T ss_pred hcCCHHHHHHHHHH---------------HHhCCCHHHHHHHHHhcCChHHHHHHHHH------HHH---------cCCH
Confidence 44778899999977 8889999999999999988532 111111 110 1223
Q ss_pred HHHHHHHHHcCCHH-------HHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHH
Q 000053 1747 REAAKIFEAIGKVD-------SAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLD 1819 (2576)
Q Consensus 1747 ~eAA~~fe~~G~~~-------~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~ 1819 (2576)
.+|.++|..+.+.. .=+.||.+.++++. .+-|.+......+...|++++..|.|++|..+|.++++|.++..
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~ 1229 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 1229 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHH
Confidence 44444443332222 11345556667664 44555533445677899999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHh----CcHHHHHHHH
Q 000053 1820 VCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAF----HSMDLIRNFL 1895 (2576)
Q Consensus 1820 ~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~----~~~e~a~~~l 1895 (2576)
+|.+.|.+++|++.+++-.. .+ .| .+.| ..+.+.|+++.|....... +..+++..++
T Consensus 1230 tLvkLge~q~AIEaarKA~n---~~------aW---------kev~-~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY 1290 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKANS---TR------TW---------KEVC-FACVDGKEFRLAQMCGLHIVVHADELEELINYY 1290 (1630)
T ss_pred HHHHhCCHHHHHHHHHHhCC---HH------HH---------HHHH-HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999983211 11 11 1111 1122233333333322111 1122233344
Q ss_pred HhcCCHHHHHHHHH---------------------h--ccCHHHHHHHHHHcCC-------------HHHHHHHHHHcCC
Q 000053 1896 NSKGCFDELLVLEE---------------------E--SESFMDAANIARLRGD-------------ILRTVDLLQKVGN 1939 (2576)
Q Consensus 1896 ~~~~~~dea~ell~---------------------~--~g~feeAa~ia~~~G~-------------~~eA~kly~~aG~ 1939 (2576)
...|+|+||+.++. . -++..|+++.+...++ |.+++-+|.+.|+
T Consensus 1291 e~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1291 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred HHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 44444444443332 1 2344555666666555 8999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHH
Q 000053 1940 FKEACNLTLNYVLSNSLWSSGSKGWPLKQFTQKKELLEKAKL 1981 (2576)
Q Consensus 1940 ~~eA~klll~~~~~~~lw~~~~~g~~~~~~~~~~~l~~~~~~ 1981 (2576)
+++|...+..|.- .=|....+..-+.+ ...-+|+-||..
T Consensus 1371 ~dnA~~tm~~h~~--~a~~~~~Fk~~i~k-v~n~elyykai~ 1409 (1630)
T 1xi4_A 1371 YDNAIITMMNHPT--DAWKEGQFKDIITK-VANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHHhccH--hhhhhHHHHHHhcc-cccHHHHHHHHH
Confidence 9999977666632 23666666654544 555677777764
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.98 E-value=3.5e-08 Score=137.48 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=152.7
Q ss_pred HHHhhcHHHHHHHHHHcCChh-----HHHHHHHHH----------HHHHHhHhhcCChH------HHHHHHHHHHHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTY-----WEGRSKASG----------LKAAADRISSSNPL------EARIILREAAKIFEA 1755 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~-----~~~l~~A~~----------l~~~a~~l~~~~~~------~a~~~~~eAA~~fe~ 1755 (2576)
++..+.+.+|...|+++--.. -..++...- ..+.+..+..-... ...+.|+||..+|++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkK 1074 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRK 1074 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667999999999999965211 111211100 01111111111111 125568888888888
Q ss_pred cCCHHHHHHHHH-HcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHH---HHHHHHHcCCCHHHHH
Q 000053 1756 IGKVDSAAKCFF-DMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLA---ECLDVCSKGKLFDIGL 1831 (2576)
Q Consensus 1756 ~G~~~~Aa~~y~-kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~---kAi~~y~k~k~fd~A~ 1831 (2576)
++++..|+..+. ..++|++|.+++.+......|-+.|.++++.|.+++|++.|.++++++ +.+.+|.+.|.|++|+
T Consensus 1075 a~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1075 FDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHH
Confidence 888888866555 888999999988875566789999999999999999999999999865 5777889999999999
Q ss_pred HHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhC--cHHHHHHHHHhcCCHHHHHHHHH
Q 000053 1832 QYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFH--SMDLIRNFLNSKGCFDELLVLEE 1909 (2576)
Q Consensus 1832 ~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~--~~e~a~~~l~~~~~~dea~ell~ 1909 (2576)
++.+.-.+..+.. ... . .-+..|.+.+...++..+....+ .+...++.+.+.|.|++|..++.
T Consensus 1155 eyL~mArk~~~e~-~Id----------t----~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1155 KYLQMARKKARES-YVE----------T----ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHhhcccc-ccc----------H----HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9998422222100 000 0 02223444455554333332221 22334667777788888888888
Q ss_pred hccCHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1910 ESESFMDAANIARLRGDILRTVDLLQKVGNF 1940 (2576)
Q Consensus 1910 ~~g~feeAa~ia~~~G~~~eA~kly~~aG~~ 1940 (2576)
.+++|..++..+.+.|++++|++.+.+|++.
T Consensus 1220 kA~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1220 NVSNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred hhhHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 8888888888888888888888888877766
No 30
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=98.87 E-value=8.4e-10 Score=125.46 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=98.5
Q ss_pred ccccccCcccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHH
Q 000053 649 SIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNL 728 (2576)
Q Consensus 649 ~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L 728 (2576)
+++||++++|.++.|..+.++. .... . ...| .+..++.. .....|+..+.+.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-----~~~~--~---~~~G---~~p~~~~~-----------~~~~~e~~~i~~~I~~- 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-----AVTA--F---DRQG---DLPNVVVT-----------PNFEAGVDQVVDQLAM- 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCC---CCCEEEEE-----------SSHHHHHHHHHHHHHH-
T ss_pred CCCCCChHHHHHHHHHHhcCCC-----cccC--C---CCCC---CCCEEEEe-----------CCHHHHHHHHHHHHHH-
Confidence 5799999999999997765442 0000 0 0011 12233322 0124678888888877
Q ss_pred HhcccCCCCCCeEEEEcccHHHHHHHHHHhccc-c-----cc---CCCCceEEccCCCCCCccCCEEEEEcccCCCCCcc
Q 000053 729 YKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSK-Y-----VN---SAGFAVKVMSVDGFQGGEEDIIIISTVRSNNGGSI 799 (2576)
Q Consensus 729 ~~~~~~~~~~~sIgIITPY~aQv~~I~~~L~~~-~-----~~---~~~~~v~V~TVd~fQG~E~DiVIlS~Vrs~~~~~~ 799 (2576)
...+ ..+||||++.+.|...+.+.|... . .. .....+.|.|+|.++|.|+|.||+..+.....
T Consensus 57 ~~~g-----~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~--- 128 (174)
T 3dmn_A 57 NDSE-----RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY--- 128 (174)
T ss_dssp HHHT-----TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---
T ss_pred hccC-----CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---
Confidence 3332 479999999999999999998653 1 00 11236999999999999999999988655422
Q ss_pred ccCCCCCceEEecccccccEEEEech
Q 000053 800 GFISNPRRVNVALTRARHCLWILGNE 825 (2576)
Q Consensus 800 gFl~d~~RlNVAlTRAR~~LiIVGn~ 825 (2576)
....++++++||+||||+.|+|++..
T Consensus 129 ~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 129 QREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp CSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CChhhhceeEEEecCcccEEEEEeCC
Confidence 12456799999999999999999753
No 31
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=98.50 E-value=3.7e-06 Score=121.95 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=98.3
Q ss_pred CCCEEEEEcCCCCChhHHhhhcccc---CcceEEEecCCCCCCccccccchhhhhccccHHHHHhhccCCcccccccccc
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQLS---GIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRM 654 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~l~---~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~g~~~~~L~~qYRm 654 (2576)
.|++|+|||++..+..+.-+.-.+. +...+++|||++|- +.. --|.....|.+........+.|.++||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQS--IY~-----FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQA--IYA-----FRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGC--CCG-----GGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccc--ccc-----CcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 4999999999999998865554433 24689999999993 110 0011111222222222357889999999
Q ss_pred CcccccccccccccCcc--c-CC-c--cccccccccc--c-CCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHH
Q 000053 655 HPSISFFPNSYFYENKI--H-DS-P--TVEKRSYEKR--F-LPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKIL 725 (2576)
Q Consensus 655 hp~I~~f~n~~fY~g~L--~-~~-~--~~~~~~~~~~--~-~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv 725 (2576)
+|+|.++.|..|-...- . .. + .+........ + ..+...+++.++.... +. .........|+..|...|
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~~~~ea~~iA~~I 526 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG--ES-CGVGDYQSTMAQVCAAQI 526 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCS--SC-CCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCC--Cc-cCcchHHHHHHHHHHHHH
Confidence 99999999987743211 0 00 0 0000000000 0 0010011222221111 00 000111246888898888
Q ss_pred HHHHhccc------------CCCCCCeEEEEcccHHHHHHHHHHhcc
Q 000053 726 LNLYKGWI------------NSKEKLSIGIVSPYIAQVAAIQEKLGS 760 (2576)
Q Consensus 726 ~~L~~~~~------------~~~~~~sIgIITPY~aQv~~I~~~L~~ 760 (2576)
..++..+. ......+|+|++..+.|...|.+.|.+
T Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~ 573 (1180)
T 1w36_B 527 RDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTL 573 (1180)
T ss_dssp HHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHH
Confidence 88876421 224568999999999999999999965
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.48 E-value=7.8e-07 Score=113.58 Aligned_cols=243 Identities=14% Similarity=0.087 Sum_probs=95.8
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHH-HHHHHHHH---HHHHhHhh----cCChHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWE-GRSKASGL---KAAADRIS----SSNPLE 1741 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~-~l~~A~~l---~~~a~~l~----~~~~~~ 1741 (2576)
+.|.-|...|.. +...+++++|.++|.++.|+..- .+..++.- -+.+.... ...++
T Consensus 30 ~~~~vWs~La~A---------------~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~- 93 (449)
T 1b89_A 30 NEPAVWSQLAKA---------------QLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHH---------------HHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-
Confidence 567789999977 88899999999999999885421 11111110 01110000 00000
Q ss_pred HHHHHHHHHHHHHHcCCHHHH---------------HHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHH
Q 000053 1742 ARIILREAAKIFEAIGKVDSA---------------AKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAAD 1806 (2576)
Q Consensus 1742 a~~~~~eAA~~fe~~G~~~~A---------------a~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAe 1806 (2576)
.....+.+.+|.++|++.++ ..+|.+.|.|+.|..+|.+ .+.+...|.++.+.|+|.+|.+
T Consensus 94 -~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~---a~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 94 -SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---VSNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ----------------CHHHHTTTTTCC----------------CTTTHHHHHHH---TTCHHHHHHHHHTTTCHHHHHH
T ss_pred -chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHH---hhhHHHHHHHHHHhccHHHHHH
Confidence 00112223344444444433 2334445666666666655 3456666666666777777777
Q ss_pred HHHHcCCH---HHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1807 VYARGSFL---AECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1807 lY~kagd~---~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
+|.++++. ..++..|.+.|.|+.|...... .. ..++.++.+.+.|.+.|.+..|++.++
T Consensus 170 a~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~----------L~--------~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 170 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLH----------IV--------VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT----------TT--------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH----------HH--------hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 77776665 5666666666677666332220 00 112234456677777777777777666
Q ss_pred HhC--------cHHHHHHHHHh--cCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHH
Q 000053 1884 AFH--------SMDLIRNFLNS--KGCFDELLVLEEESESFMDAANIARLRGDILRTVDLLQKVGNFKEACNLTLNY 1950 (2576)
Q Consensus 1884 ~~~--------~~e~a~~~l~~--~~~~dea~ell~~~g~feeAa~ia~~~G~~~eA~kly~~aG~~~eA~klll~~ 1950 (2576)
..- .+.+..-...+ .+.+.|.++++...=+...-..++.....+.+.+-+|.+-|.++.|...+..|
T Consensus 232 ~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 232 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 421 12222111111 12333444444444444444666667888888999999999999888876665
No 33
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=98.39 E-value=1.7e-06 Score=125.68 Aligned_cols=152 Identities=10% Similarity=0.045 Sum_probs=90.3
Q ss_pred CEEEEEcCCCCChhHHhhhccccC-cceEE--EecCCCCCCccccccchhhhhccc---cHHHHHhh-ccCC---ccccc
Q 000053 580 NFLVIDEAAQLKESESTIPLQLSG-IKHAV--LFGDECQLPAMVESKVSDEACFGR---SLFERLSH-LRHS---KHLLS 649 (2576)
Q Consensus 580 D~VIIDEAsQ~~e~e~lipL~l~~-~k~vI--LVGD~~QLpPvv~s~~~~~~~~~~---SLfeRL~~-~g~~---~~~L~ 649 (2576)
++|+|||++..+..+.-+.-.+.+ .+++. ++||+.+.+... ....-+++.. ..+.++.. .+++ .+.|+
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~--~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~ 280 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREP--HELELFRMTGKTYYRLHQKAKELNLDITYKELSG 280 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCC--CTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCC--CCCCcchhHHHHHHHHHHHHHHcCCCcccceecC
Confidence 799999999999988665544432 34544 679976543110 0001122221 22333322 2333 67899
Q ss_pred cccccCcccccccccccccCcccCCccccccccccccCCCCCCCCcEEEEccCCccccccccccCHHHHHHHHHHHHHHH
Q 000053 650 IQYRMHPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLY 729 (2576)
Q Consensus 650 ~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~~~~~~~~~~~~~fidv~~g~e~~~~~S~~N~~Ea~~v~~lv~~L~ 729 (2576)
++||+.+.|..+++..+.... . ...++. ..++.++.. ..-..|+..|++.+..+.
T Consensus 281 ~nyRs~~~il~~i~~~~~~~~-----~--------~~~~~~-~~~i~i~~~-----------~~~~~Ea~~ia~~I~~l~ 335 (1166)
T 3u4q_B 281 TERHTKTPELAHLEAQYEARP-----A--------IPYAEK-QEALTVMQA-----------ANRRAELEGIAREIHALV 335 (1166)
T ss_dssp CSTTTTCHHHHHHHHSSSCSS-----C--------CCCCSC-CSSEEEEEE-----------SSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhHhhcC-----C--------CccCCC-CCCeEEEEc-----------CChHHHHHHHHHHHHHHH
Confidence 999999999887765442110 0 001111 123333332 112468999999998888
Q ss_pred hcccCCCCCCeEEEEcccH-HHHHHHHHHhcc
Q 000053 730 KGWINSKEKLSIGIVSPYI-AQVAAIQEKLGS 760 (2576)
Q Consensus 730 ~~~~~~~~~~sIgIITPY~-aQv~~I~~~L~~ 760 (2576)
.. ...+..+|+|+++.+ .|...|...|.+
T Consensus 336 ~~--~g~~~~diAVL~R~~~~~~~~i~~~L~~ 365 (1166)
T 3u4q_B 336 RE--KGYRYKDVAILARQPEDYKDMVKEVFAD 365 (1166)
T ss_dssp HT--SCCCGGGEEEEESCGGGTHHHHHHHHHH
T ss_pred Hh--cCCChhheEEEeCChHHHHHHHHHHHHH
Confidence 73 123667999999998 589999999965
No 34
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.34 E-value=9.9e-06 Score=112.86 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=63.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH
Q 000053 1762 AAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1762 Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
..+++...|+++.|.+++....++..|+++|+.+.+.|+++.|+++|.++|+++++..+|...+..++..++++
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred heehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHH
Confidence 34566788999999999887666789999999999999999999999999999999999988888776665554
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.19 E-value=9.4e-06 Score=113.10 Aligned_cols=97 Identities=13% Similarity=0.026 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHH
Q 000053 1743 RIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCS 1822 (2576)
Q Consensus 1743 ~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~ 1822 (2576)
...+.++|+++.+.|+++.|++||.++|+++.+..+|....+.+.+.++|+.++..|.+..|..+|.+.|++++|+++|.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999866677889999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhhhh
Q 000053 1823 KGKLFDIGLQYISYWKQ 1839 (2576)
Q Consensus 1823 k~k~fd~A~~l~r~~~~ 1839 (2576)
+.+.|++|+.++++|..
T Consensus 761 ~~~~~~~A~~lA~~~~~ 777 (814)
T 3mkq_A 761 KSQRFSEAAFLGSTYGL 777 (814)
T ss_dssp HTTCHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHhCC
Confidence 99999999999995443
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.07 E-value=4.4e-05 Score=97.62 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=112.2
Q ss_pred HHHhhcHHHHHHHHHHcCChh-----HHHHHHHHH---HHHHHhHhhcC-ChH---------HHHHHHHHHHHHHHHcCC
Q 000053 1697 LFYEQNYEMATICFEKAKDTY-----WEGRSKASG---LKAAADRISSS-NPL---------EARIILREAAKIFEAIGK 1758 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~-----~~~l~~A~~---l~~~a~~l~~~-~~~---------~a~~~~~eAA~~fe~~G~ 1758 (2576)
+...|+|++|.++++.+-... .-.+..++. -...+..+... +.. ...+.|.+|..+|.++..
T Consensus 71 ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n 150 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN 150 (449)
T ss_dssp --------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Confidence 777999999999888776421 011111221 11223222221 111 126788999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHc----CCHHHHHHHHHcCCCHHHHHHHH
Q 000053 1759 VDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARG----SFLAECLDVCSKGKLFDIGLQYI 1834 (2576)
Q Consensus 1759 ~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~ka----gd~~kAi~~y~k~k~fd~A~~l~ 1834 (2576)
|..=+.|+.++|+|+.|++.|++..+...|.++...+...|+|+.|..+..+. .+...++++|.+.|.|++|+.++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999776778999999999999999997666542 23456777899999999999988
Q ss_pred HhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcH---HHHHHHHHhcCCHHHHHHHHHhc
Q 000053 1835 SYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSM---DLIRNFLNSKGCFDELLVLEEES 1911 (2576)
Q Consensus 1835 r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~---e~a~~~l~~~~~~dea~ell~~~ 1911 (2576)
++--.-..+..++..+. +.-|.+- .+..+|+.++.+.+- ....+.+.....|.|++-++...
T Consensus 231 e~aL~le~ah~~~ftel--------------~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 231 EAALGLERAHMGMFTEL--------------AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHTTSTTCCHHHHHHH--------------HHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHH--------------HHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 84322222332222222 1112211 233334433332211 11233445556666666666666
Q ss_pred cCHHHHHHHHHH
Q 000053 1912 ESFMDAANIARL 1923 (2576)
Q Consensus 1912 g~feeAa~ia~~ 1923 (2576)
++|+.|+.....
T Consensus 296 ~e~d~A~~tm~~ 307 (449)
T 1b89_A 296 EEYDNAIITMMN 307 (449)
T ss_dssp TCHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 666666554443
No 37
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=98.03 E-value=2.9e-06 Score=121.91 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCeEEEeeeccCCccccEEEEeecccC-CCCch---hhHHHHhhhccccccCCCCCCCCCCchhhhccchhHHHhhHhhh
Q 000053 1547 KQALVLTIVESKGLEFQDVLLYKFFSA-SPLKN---QWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVA 1622 (2576)
Q Consensus 1547 ~~V~V~TIH~aKGLEFd~ViL~n~f~~-~p~~~---~w~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~eErRlLYVA 1622 (2576)
++|.|||+|.+||||||+|||+|+.++ +|... .|..+.. .+ . ......+.||+|+||||
T Consensus 657 ~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~-----~l----~--------~~dr~~~eEERrLfYvA 719 (1122)
T 1w36_C 657 GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQ-----KP----K--------RGDRSRRDDDRYLFLEA 719 (1122)
T ss_dssp SSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHH-----SC----C--------TTCCCHHHHHHHHHHHH
T ss_pred CeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhc-----cc----C--------CCchhhhHHHHHHHHHH
Confidence 689999999999999999999999999 44322 1211100 00 0 00112367999999999
Q ss_pred hccccceeEEEEecC
Q 000053 1623 ITRTRQRLWIWENKE 1637 (2576)
Q Consensus 1623 iTRAr~~L~I~~s~~ 1637 (2576)
||||+++|+|++...
T Consensus 720 ltrA~~~L~LSy~~~ 734 (1122)
T 1w36_C 720 LISAQQKLYISYIGR 734 (1122)
T ss_dssp HHHEEEEEEEEEECB
T ss_pred HHhhcCeEEEEEeCC
Confidence 999999999998764
No 38
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.00013 Score=81.91 Aligned_cols=133 Identities=14% Similarity=-0.013 Sum_probs=105.5
Q ss_pred HHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHhhhhcCCcc
Q 000053 1765 CFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTD 1844 (2576)
Q Consensus 1765 ~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~ 1844 (2576)
...+.|+++.|.++..+..++..|++.|+..-..|++.-|.++|.++||+++..-+|.-.|+-++..++.+
T Consensus 14 LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~--------- 84 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQN--------- 84 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH---------
T ss_pred HHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH---------
Confidence 33466888888888777666789999999999999999999999999999999999988887765555544
Q ss_pred cccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHhcCCHHHHHHHHHhccCHHHHHHHHHHc
Q 000053 1845 VGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGCFDELLVLEEESESFMDAANIARLR 1924 (2576)
Q Consensus 1845 ~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~~~~~dea~ell~~~g~feeAa~ia~~~ 1924 (2576)
--...|++..|.. .+-..|+++++++++.+.|++.+|+-.++..
T Consensus 85 -----------------------iA~~~g~~n~af~-------------~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~ 128 (177)
T 3mkq_B 85 -----------------------IAQTREDFGSMLL-------------NTFYNNSTKERSSIFAEGGSLPLAYAVAKAN 128 (177)
T ss_dssp -----------------------HHHHTTCHHHHHH-------------HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred -----------------------HHHHCccHHHHHH-------------HHHHcCCHHHHHHHHHHCCChHHHHHHHHHc
Confidence 1133444443333 2334688999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCHHH
Q 000053 1925 GDILRTVDLLQKVGNFKE 1942 (2576)
Q Consensus 1925 G~~~eA~kly~~aG~~~e 1942 (2576)
|..+.|.++..++|--++
T Consensus 129 g~~~~a~~~~~~~~~~~~ 146 (177)
T 3mkq_B 129 GDEAAASAFLEQAEVDEQ 146 (177)
T ss_dssp TCHHHHHHHHHHTTCCGG
T ss_pred CcHHHHHHHHHHhCCccc
Confidence 999999999988875533
No 39
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.95 E-value=0.00094 Score=89.16 Aligned_cols=136 Identities=7% Similarity=-0.031 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC--------CHHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHh
Q 000053 1787 ELEKAGECFSLAGCYKLAADVYARGS--------FLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIE 1858 (2576)
Q Consensus 1787 ~~~~aAe~~e~~g~~~eAAelY~kag--------d~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e 1858 (2576)
.+...|..|.+.|++++|.++|.++- -+...+.+|.+.|.+++|.++.++..+..+.+
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------- 372 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK-------------- 372 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS--------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc--------------
Confidence 34555666666666666666666531 13344455556666666666666332221111
Q ss_pred HHhHHHHHHHHHHcCChHHHHHHHHHhC--------cHHHHHHHHHhcCCHHHHHHHHHhcc----C----HHHHHHHHH
Q 000053 1859 QDFLQSCALHFHKLNDNKSMMKFVRAFH--------SMDLIRNFLNSKGCFDELLVLEEESE----S----FMDAANIAR 1922 (2576)
Q Consensus 1859 ~~~le~~a~~f~klgd~~~A~~~~k~~~--------~~e~a~~~l~~~~~~dea~ell~~~g----~----feeAa~ia~ 1922 (2576)
.......+..|.+.|+++.|.+.+...- .+......+...|++++|++++.+.- + +..-+.++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 1122234556677888888877766321 12223444455566666665543210 0 111133344
Q ss_pred HcCCHHHHHHHHHH
Q 000053 1923 LRGDILRTVDLLQK 1936 (2576)
Q Consensus 1923 ~~G~~~eA~kly~~ 1936 (2576)
+.|++++|.+.|.+
T Consensus 453 ~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 453 QLGNILLANEYLQS 466 (597)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555555544
No 40
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.95 E-value=0.0011 Score=83.76 Aligned_cols=225 Identities=12% Similarity=0.038 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHcCChh-----HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCH------
Q 000053 1691 IFVCLWLFYEQNYEMATICFEKAKDTY-----WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKV------ 1759 (2576)
Q Consensus 1691 ~~~~~~l~~~~~ye~A~k~f~ragd~~-----~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~------ 1759 (2576)
.+.|.+++..|+|++|..+|++|-... ....+.++...... .....+.+.+...+.+|.+++.+.+.+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSES-YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 457888999999999999999975421 11112222111111 123456677777888888888877752
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcC-------CHHHHHHHHHHcCCHHHHHHHHHcCCCHHHH
Q 000053 1760 --DSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAG-------CYKLAADVYARGSFLAECLDVCSKGKLFDIG 1830 (2576)
Q Consensus 1760 --~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g-------~~~eAAelY~kagd~~kAi~~y~k~k~fd~A 1830 (2576)
..-+.+|...|++++|.+.+.+. .+.+.+.+ .+..-+.+|...|++++|++. +++|
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~a---------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~------~~~a 250 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKA---------YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY------FKRA 250 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH------HHHH
Confidence 22246677778888887776652 22222222 223344555555555555555 3445
Q ss_pred HHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHhcCC------HHHH
Q 000053 1831 LQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGC------FDEL 1904 (2576)
Q Consensus 1831 ~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~~~~------~dea 1904 (2576)
+++.++.... .. . ...+...+..|.+.|++..|.+.+... .+...+.+. +.-.
T Consensus 251 l~~~~~~~~~--~~------~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 251 IAVFEESNIL--PS------L-------PQAYFLITQIHYKLGKIDKAHEYHSKG------MAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHTTCG--GG------H-------HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhccc--hh------H-------HHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHH
Confidence 5554411110 00 0 111223444566678887777665432 111111111 1122
Q ss_pred HHHHHhccC---HHHHHHHHHHcCCHH-------HHHHHHHHcCCHHHHHHHHHHHHH
Q 000053 1905 LVLEEESES---FMDAANIARLRGDIL-------RTVDLLQKVGNFKEACNLTLNYVL 1952 (2576)
Q Consensus 1905 ~ell~~~g~---feeAa~ia~~~G~~~-------eA~kly~~aG~~~eA~klll~~~~ 1952 (2576)
..++...|+ +++|...+.+.+... .-+.+|.+.|++++|...+-..+-
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233444454 555555555554433 234556667888888776555443
No 41
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.92 E-value=0.00075 Score=90.14 Aligned_cols=155 Identities=8% Similarity=-0.028 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcC-----C---HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1769 MGEYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGS-----F---LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1769 ag~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d---~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
.|++++|.+++.+.. +...+...|..|.+.|++++|.++|.++- + +...+.+|.+.|.+++|+++++
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666655431 12345566777777777777777777631 1 2344456667777777777777
Q ss_pred hhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhC--------cHHHHHHHHHhcCCHHHHHHH
Q 000053 1836 YWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFH--------SMDLIRNFLNSKGCFDELLVL 1907 (2576)
Q Consensus 1836 ~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~--------~~e~a~~~l~~~~~~dea~el 1907 (2576)
+.....+.+. ......+..|.+.|+++.|.+.+...- .+......+...|++++|.++
T Consensus 432 ~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 432 TAARLFQGTH--------------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHTTTTCS--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCccch--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 4333222110 112224445667788888777665421 122234445556666666655
Q ss_pred HHhccCH-----------HHH----HHHHHHcCCHHHHHHHHHHc
Q 000053 1908 EEESESF-----------MDA----ANIARLRGDILRTVDLLQKV 1937 (2576)
Q Consensus 1908 l~~~g~f-----------eeA----a~ia~~~G~~~eA~kly~~a 1937 (2576)
+.+.-+. .++ +.++.+.|++++|.+.|.++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5432111 111 34445566666666666543
No 42
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=0.00076 Score=85.07 Aligned_cols=102 Identities=13% Similarity=-0.005 Sum_probs=51.0
Q ss_pred HcCCHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHH
Q 000053 1768 DMGEYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYI 1834 (2576)
Q Consensus 1768 kag~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~ 1834 (2576)
..|++++|.+.|.+.. ....+...|.++...|.+++|.+.|.++-. +.....+|.+.|.+++|++..
T Consensus 181 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455566655555431 112345556666666666666666655311 112233455666677777666
Q ss_pred HhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1835 SYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1835 r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
++.-...+.. .......+..+.+.|++..|.+.+.
T Consensus 261 ~~al~~~p~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 261 RRAIELQPHF--------------PDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHTCSSC--------------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHhhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6432222111 0112223444566777777766554
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.87 E-value=0.00092 Score=85.74 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=93.8
Q ss_pred HHHHcCCHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcC-----C---HHHHHHHHHcCCCHHHHH
Q 000053 1765 CFFDMGEYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGS-----F---LAECLDVCSKGKLFDIGL 1831 (2576)
Q Consensus 1765 ~y~kag~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d---~~kAi~~y~k~k~fd~A~ 1831 (2576)
+|.+.|++++|.+.+.+.. ....+...|.+|.+.|++++|.++|.++- + +.....+|.+.+.+++|+
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555677777777776541 22446778888888899988888888752 2 233445677788899998
Q ss_pred HHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHH-HHHHHhcCCHHHHHHHHHh
Q 000053 1832 QYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLI-RNFLNSKGCFDELLVLEEE 1910 (2576)
Q Consensus 1832 ~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a-~~~l~~~~~~dea~ell~~ 1910 (2576)
..+++.-...+.............. ..-.-..+..+.+.|++..|++.+...-..... ..+. ...+.....++..
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKK--LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT--VRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHHHH
Confidence 8888543332222110000000000 000112255677789998888776532100000 0000 0011222344556
Q ss_pred ccCHHHHHHHHHH----cC-C---HHHHHHHHHHcCCHHHHHHHH
Q 000053 1911 SESFMDAANIARL----RG-D---ILRTVDLLQKVGNFKEACNLT 1947 (2576)
Q Consensus 1911 ~g~feeAa~ia~~----~G-~---~~eA~kly~~aG~~~eA~kll 1947 (2576)
.|++++|...+.+ .. . +..-+.+|.+.|++++|...+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 352 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 352 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666555542 11 1 223445556667777776643
No 44
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.84 E-value=0.0021 Score=78.96 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=88.0
Q ss_pred HHHHHcCCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHH
Q 000053 1764 KCFFDMGEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIG 1830 (2576)
Q Consensus 1764 ~~y~kag~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A 1830 (2576)
.+|...|++++|.+++.+. .....+...|.++...|++++|.+.|.++-. +-....+|...+.+++|
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4555566666666666553 1224466777777888888888877776422 22333455667778888
Q ss_pred HHHHHhhhhcCCcccccccchHHHHHHhH--HhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHhcCC--------
Q 000053 1831 LQYISYWKQHADTDVGRVKSSKEMKKIEQ--DFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGC-------- 1900 (2576)
Q Consensus 1831 ~~l~r~~~~~~~~~~~~~~~s~~~~~~e~--~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~~~~-------- 1900 (2576)
+..+++.-+..+..... +....... ...-..+..+.+.|++..|.+.+...-. ....
T Consensus 208 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~ 274 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRC----FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---------TEPSVAEYTVRS 274 (359)
T ss_dssp HHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCCSSHHHHHHH
T ss_pred HHHHHHHHhhCccchHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCchHHHHHH
Confidence 88777533332222110 00000000 0011124456778888888776653211 1111
Q ss_pred HHHHHHHHHhccCHHHHHHHHHH----c-CC---HHHHHHHHHHcCCHHHHHHH
Q 000053 1901 FDELLVLEEESESFMDAANIARL----R-GD---ILRTVDLLQKVGNFKEACNL 1946 (2576)
Q Consensus 1901 ~dea~ell~~~g~feeAa~ia~~----~-G~---~~eA~kly~~aG~~~eA~kl 1946 (2576)
+......+...|++++|.+.+.+ . +. +..-+.+|.+.|++++|...
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11122445566666666555532 1 11 22445566667777777763
No 45
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=0.0017 Score=81.74 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHcCCHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHH
Q 000053 1767 FDMGEYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQY 1833 (2576)
Q Consensus 1767 ~kag~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l 1833 (2576)
.+.|++++|.+.|.+.. ....+...|.++...|++++|.++|.++-. +.....+|.+.+.+++|+..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33455555555555431 112345566666666777777766665311 22233355566666777666
Q ss_pred HHh
Q 000053 1834 ISY 1836 (2576)
Q Consensus 1834 ~r~ 1836 (2576)
.++
T Consensus 192 ~~~ 194 (388)
T 1w3b_A 192 FEK 194 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 46
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.72 E-value=0.0023 Score=78.00 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCc----hHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1739 PLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEE----PELEKAGECFSLAGCYKLAADVYARGSFL 1814 (2576)
Q Consensus 1739 ~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~----~~~~~aAe~~e~~g~~~eAAelY~kagd~ 1814 (2576)
.+++...|.+|+.+|...|++++|+++|.+ |++++.+..+. ..+...|.+|.+.|+|++|.++|.
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~----- 101 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLK------AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE----- 101 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHH------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-----
Confidence 445666778888888888888888776653 44444432111 123344555555555555554433
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHc-CChHHHHHHHHHhCcHHHHHH
Q 000053 1815 AECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKL-NDNKSMMKFVRAFHSMDLIRN 1893 (2576)
Q Consensus 1815 ~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~kl-gd~~~A~~~~k~~~~~e~a~~ 1893 (2576)
+|++++.+.+.+..+... +...+..|... |++..|++.++. +.+
T Consensus 102 -~Al~l~~~~g~~~~~a~~----------------------------~~~lg~~~~~~lg~~~~A~~~~~~------Al~ 146 (292)
T 1qqe_A 102 -NAIQIFTHRGQFRRGANF----------------------------KFELGEILENDLHDYAKAIDCYEL------AGE 146 (292)
T ss_dssp -HHHHHHHHTTCHHHHHHH----------------------------HHHHHHHHHHTTCCHHHHHHHHHH------HHH
T ss_pred -HHHHHHHHcCCHHHHHHH----------------------------HHHHHHHHHHhhcCHHHHHHHHHH------HHH
Confidence 233343333333322222 22234445553 777777766542 222
Q ss_pred HHHhcCC-------HHHHHHHHHhccCHHHHHHHHHH-------cCC--------HHHHHHHHHHcCCHHHHHHH
Q 000053 1894 FLNSKGC-------FDELLVLEEESESFMDAANIARL-------RGD--------ILRTVDLLQKVGNFKEACNL 1946 (2576)
Q Consensus 1894 ~l~~~~~-------~dea~ell~~~g~feeAa~ia~~-------~G~--------~~eA~kly~~aG~~~eA~kl 1946 (2576)
+....+. +.....++...|++++|...+.+ .+. +...+.+|...|++++|...
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222221 23344566677777777666543 111 23445667777888888773
No 47
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.71 E-value=0.0012 Score=81.07 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=54.6
Q ss_pred HHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1698 FYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRIS-SSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1698 ~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~-~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
+..|+|++|..++++|....-. ..+. ..+.+++...|.+|+.+|...|++++|+++|.+ |+
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~------------~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~------al 63 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKT------------SFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ------EA 63 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCC------------CSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred CccchHHHHHHHHHHHHHHccc------------cccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HH
Confidence 3478888888888876532100 0111 356677778888888888888888888877654 44
Q ss_pred HHHHHhCCc----hHHHHHHHHHHHcCCHHHHHHHHH
Q 000053 1777 TIYLERCEE----PELEKAGECFSLAGCYKLAADVYA 1809 (2576)
Q Consensus 1777 ely~~~~~~----~~~~~aAe~~e~~g~~~eAAelY~ 1809 (2576)
+++.+..+. ..+..+|.+|...|+|.+|.++|.
T Consensus 64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 100 (307)
T 2ifu_A 64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE 100 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 454442111 123344555555555555544443
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.71 E-value=0.0022 Score=81.28 Aligned_cols=183 Identities=10% Similarity=-0.006 Sum_probs=102.2
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHH-------HH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTY---WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVD-------SA 1762 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~---~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~-------~A 1762 (2576)
+|..++..|+|++|..+|+++-... ....+.++...... .....+.+++...|.+|.+++.+.+... .-
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNA-YFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 4555888999999999999865421 11111111111110 1123455666666777777666655432 23
Q ss_pred HHHHHHcCCHHHHHHHHHHhC-------Cc----hHHHHHHHHHHHcCC-----------------HHHHHHHHHHcCC-
Q 000053 1763 AKCFFDMGEYERAGTIYLERC-------EE----PELEKAGECFSLAGC-----------------YKLAADVYARGSF- 1813 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~~-------~~----~~~~~aAe~~e~~g~-----------------~~eAAelY~kagd- 1813 (2576)
+.+|...|++++|.+.|.+.. +. ..+...|.++...|+ |++|.+.|.++-.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455666677777776665531 11 235677788888888 8888877766422
Q ss_pred -------------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHH
Q 000053 1814 -------------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMK 1880 (2576)
Q Consensus 1814 -------------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~ 1880 (2576)
+.....+|...+.+++|++.+++.-...+.. .........+...+..|...|++..|.+
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--------GDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 1122335666788888888877321111000 0000011133445566778899988877
Q ss_pred HHHH
Q 000053 1881 FVRA 1884 (2576)
Q Consensus 1881 ~~k~ 1884 (2576)
.+..
T Consensus 285 ~~~~ 288 (411)
T 4a1s_A 285 HYKR 288 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 49
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.70 E-value=0.0013 Score=80.27 Aligned_cols=161 Identities=18% Similarity=0.088 Sum_probs=79.4
Q ss_pred HHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHH
Q 000053 1696 WLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERA 1775 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A 1775 (2576)
.+...|+|++|..+|++|-..... ..++......+..+|.+|...|++++|+.+|. +|
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~------~A 103 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKK----------------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE------NA 103 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------HH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH----------------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH------HH
Confidence 344566666666666655332110 11222233345556666666666666655543 23
Q ss_pred HHHHHHhCC----chHHHHHHHHHHHc-CCHHHHHHHHHHcCCH--------------HHHHHHHHcCCCHHHHHHHHHh
Q 000053 1776 GTIYLERCE----EPELEKAGECFSLA-GCYKLAADVYARGSFL--------------AECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1776 ~ely~~~~~----~~~~~~aAe~~e~~-g~~~eAAelY~kagd~--------------~kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
.+++.+..+ ...+...|..|... |++++|.+.|.++-.. .+.-.+|.+.|.+++|+...++
T Consensus 104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333333111 11244566666664 7777766666654322 1223455666777777777774
Q ss_pred hhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHh
Q 000053 1837 WKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAF 1885 (2576)
Q Consensus 1837 ~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~ 1885 (2576)
.-...+... . ..-.....+......+...|++..|++.+...
T Consensus 184 al~~~~~~~-~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 184 LIKSSMGNR-L------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHTTSSCT-T------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHhcCC-c------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 332221110 0 00001112233445566788888888876643
No 50
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00069 Score=76.02 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=99.9
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
+..-|+++.|...-+..++ ...|.+.|+.....|+++-|.+||.++|++.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~~---------------------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~ 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLND---------------------------SITWERLIQEALAQGNASLAEMIYQTQHSFDKLS 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHHCC---------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhCC---------------------------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHH
Confidence 5567777777776554322 2357888888999999999999999999999999
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHhhh
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWK 1838 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~k~k~fd~A~~l~r~~~ 1838 (2576)
-+|.-..+...+.+.|+..+..|++.-|-.+|.-.|++++|++++.+.+.+.+|+-+++.|.
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g 129 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANG 129 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcC
Confidence 99998777788999999999999999999999999999999999999999999999999443
No 51
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.69 E-value=0.0014 Score=79.75 Aligned_cols=169 Identities=10% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChh------HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTY------WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIG-KVDSAAKCF 1766 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~------~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G-~~~~Aa~~y 1766 (2576)
|..++..|+|++|.++|+++-... +..+... + ....+.+++...+.++.+...... -+-.-+.+|
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~--~------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT--L------VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHH--H------HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHH--H------HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 444888999999999999853211 0111111 1 111223333333333333211111 122333455
Q ss_pred HHcC-CHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHH
Q 000053 1767 FDMG-EYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQ 1832 (2576)
Q Consensus 1767 ~kag-~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~ 1832 (2576)
...| ++++|.+.+.+.. ....+...|.++...|++++|.+.|.++-. +-....+|...+.+++|..
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555 5666666555431 224577889999999999999999888532 2234456778889999999
Q ss_pred HHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHH
Q 000053 1833 YISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1833 l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
.+++.-+..+.. ...+...+..+.+.|++..|.+.++.
T Consensus 181 ~~~~al~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 181 FFSQALSIAPED--------------PFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHTTCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCC--------------hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 988544433222 11233345567778999988877653
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00087 Score=78.40 Aligned_cols=210 Identities=12% Similarity=0.040 Sum_probs=118.4
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYE 1773 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~ 1773 (2576)
|..++..|+|++|..+|+++-... .++ ..+...|..|...|++++|.++|.+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-------------------~~~----~~~~~~~~~~~~~~~~~~A~~~~~~----- 63 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-------------------KDI----TYLNNRAAAEYEKGEYETAISTLND----- 63 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-------------------CCT----HHHHHHHHHHHHTTCHHHHHHHHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-------------------ccH----HHHHHHHHHHHHcccHHHHHHHHHH-----
Confidence 444888999999999999764321 111 2346677788888888888877654
Q ss_pred HHHHHHHHhC-C----chHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccc
Q 000053 1774 RAGTIYLERC-E----EPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRV 1848 (2576)
Q Consensus 1774 ~A~ely~~~~-~----~~~~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~ 1848 (2576)
|.++..... + ...+...|.++...|++++|.+.|.++-....-..++.+.+.+++|+..+++.....+.
T Consensus 64 -a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----- 137 (258)
T 3uq3_A 64 -AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE----- 137 (258)
T ss_dssp -HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-----
T ss_pred -HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-----
Confidence 444433310 0 23456778888888888888888877544433344566666777777777732221111
Q ss_pred cchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHh-cCCHHHHHHHHHhccCHHHHHHHHHH----
Q 000053 1849 KSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNS-KGCFDELLVLEEESESFMDAANIARL---- 1923 (2576)
Q Consensus 1849 ~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~-~~~~dea~ell~~~g~feeAa~ia~~---- 1923 (2576)
........+..+...|++..|++.+...-.. ... ...+-.....+...|++++|...+.+
T Consensus 138 ---------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 138 ---------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1122333455667788888887776532110 000 00112223444455556555444432
Q ss_pred cCC----HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000053 1924 RGD----ILRTVDLLQKVGNFKEACNLTLNYVL 1952 (2576)
Q Consensus 1924 ~G~----~~eA~kly~~aG~~~eA~klll~~~~ 1952 (2576)
... +..-+.+|.+.|++++|...+-..+-
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 12334555566666666665444433
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.66 E-value=0.0023 Score=80.31 Aligned_cols=244 Identities=11% Similarity=0.006 Sum_probs=127.8
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHH-------HHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTY---WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVD-------SAA 1763 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~---~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~-------~Aa 1763 (2576)
|..++..|+|++|..+|+++-... ....+.++..... -.....+.+.+...|.+|.+++.+.+... .-+
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN-AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 444889999999999999864321 1111222111111 11233456667777777777777666532 234
Q ss_pred HHHHHcCCHHHHHHHHHHhC-------C----chHHHHHHHHHHHcCC--------------------HHHHHHHHHHcC
Q 000053 1764 KCFFDMGEYERAGTIYLERC-------E----EPELEKAGECFSLAGC--------------------YKLAADVYARGS 1812 (2576)
Q Consensus 1764 ~~y~kag~~~~A~ely~~~~-------~----~~~~~~aAe~~e~~g~--------------------~~eAAelY~kag 1812 (2576)
.+|...|++++|.+.+.+.- + ...+...|.++...|+ |.+|.+.|.++-
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56667777777777666531 1 1145677777777888 777777766542
Q ss_pred C--------------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHH
Q 000053 1813 F--------------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSM 1878 (2576)
Q Consensus 1813 d--------------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A 1878 (2576)
. +.....+|...|.+++|++.+++.-...+.. .. .......+...+..|...|++..|
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-------GD-KAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-------TC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-------CC-cHHHHHHHHHHHHHHHHcCChHHH
Confidence 2 1222335556677777777776321110000 00 000111333445566778999888
Q ss_pred HHHHHHhCcHHHHHHHHHhcCC-------HHHHHHHHHhccCHHHHHHHHH-------HcCC-------HHHHHHHHHHc
Q 000053 1879 MKFVRAFHSMDLIRNFLNSKGC-------FDELLVLEEESESFMDAANIAR-------LRGD-------ILRTVDLLQKV 1937 (2576)
Q Consensus 1879 ~~~~k~~~~~e~a~~~l~~~~~-------~dea~ell~~~g~feeAa~ia~-------~~G~-------~~eA~kly~~a 1937 (2576)
.+.+... .+.....+. +.....++...|++++|...+. ..+. +..-+.+|.+.
T Consensus 247 ~~~~~~a------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 247 SEYYKKT------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp HHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7766532 111111111 1112233445555555543332 2332 12334555566
Q ss_pred CCHHHHHHHHHHHHH
Q 000053 1938 GNFKEACNLTLNYVL 1952 (2576)
Q Consensus 1938 G~~~eA~klll~~~~ 1952 (2576)
|++++|...+-..+-
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777775555443
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.64 E-value=0.0038 Score=75.47 Aligned_cols=243 Identities=12% Similarity=0.000 Sum_probs=128.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHH-------HH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTY---WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVD-------SA 1762 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~---~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~-------~A 1762 (2576)
.|..++..|+|++|..+|+++-... .......+...... .....+.+.+...+.+|.+++.+.+... .-
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3555899999999999999964321 11111111111110 1233456666667777777766665432 23
Q ss_pred HHHHHHcCCHHHHHHHHHHhC-------Cc----hHHHHHHHHHHHcCC--------------------HHHHHHHHHHc
Q 000053 1763 AKCFFDMGEYERAGTIYLERC-------EE----PELEKAGECFSLAGC--------------------YKLAADVYARG 1811 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~~-------~~----~~~~~aAe~~e~~g~--------------------~~eAAelY~ka 1811 (2576)
+.+|...|++++|.+.+.+.- +. ..+...|.++...|+ +++|.+.|.++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456666777777776665531 11 145677777777888 77777776654
Q ss_pred C-------C-------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHH
Q 000053 1812 S-------F-------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKS 1877 (2576)
Q Consensus 1812 g-------d-------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~ 1877 (2576)
- + +.....+|...+.+++|...+++.-...+.. .........+...+..|...|++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------GDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHcCCHHH
Confidence 2 2 1122234455677777777777321110000 0000111133344556677888888
Q ss_pred HHHHHHHhCcHHHHHHHHHhcCC-------HHHHHHHHHhccCHHHHHHHHH-------HcCC-------HHHHHHHHHH
Q 000053 1878 MMKFVRAFHSMDLIRNFLNSKGC-------FDELLVLEEESESFMDAANIAR-------LRGD-------ILRTVDLLQK 1936 (2576)
Q Consensus 1878 A~~~~k~~~~~e~a~~~l~~~~~-------~dea~ell~~~g~feeAa~ia~-------~~G~-------~~eA~kly~~ 1936 (2576)
|.+.+... .+.....+. +.....++...|++++|...+. ..+. +..-+.+|.+
T Consensus 242 A~~~~~~a------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 242 ASEYYKKT------LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 315 (338)
T ss_dssp HHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 87766532 122222111 1122344455666666644443 2332 2234556667
Q ss_pred cCCHHHHHHHHHHH
Q 000053 1937 VGNFKEACNLTLNY 1950 (2576)
Q Consensus 1937 aG~~~eA~klll~~ 1950 (2576)
.|++++|...+-..
T Consensus 316 ~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 316 LGNHDQAMHFAEKH 329 (338)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 78888887754443
No 55
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.59 E-value=0.0083 Score=75.65 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHcCChh-----HHHHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcCCHH---
Q 000053 1690 IIFVCLWLFYEQNYEMATICFEKAKDTY-----WEGRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKVD--- 1760 (2576)
Q Consensus 1690 ~~~~~~~l~~~~~ye~A~k~f~ragd~~-----~~~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G~~~--- 1760 (2576)
-.+.|.+++..|+|++|..+|++|-... ....+.++. ..+. .....+.+.+...+.+|.+++.+.+.+.
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~--~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF--KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHH--HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3577888999999999999999975421 111112211 1111 1233466667777777777777766522
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCC-------HHHHHHHHHHcCCHHHHHHHHHcCCCHH
Q 000053 1761 -----SAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGC-------YKLAADVYARGSFLAECLDVCSKGKLFD 1828 (2576)
Q Consensus 1761 -----~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~-------~~eAAelY~kagd~~kAi~~y~k~k~fd 1828 (2576)
.-+.+|...|++++|.+.+.++ .+.+.+.|. +..-+.+|...|++++|++. +.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~a---------l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~------~~ 246 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAA---------LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH------FQ 246 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH------HH
Confidence 2355667777777777776542 222222221 22234455555555555555 34
Q ss_pred HHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1829 IGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1829 ~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
+|+++.+..... . . ...+...+..|.+.|+++.|.+.++
T Consensus 247 ~al~~~~~~~~~---~------------~-~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 247 KAAKVSREKVPD---L------------L-PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHHCGG---G------------H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhCCh---h------------H-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455554421110 0 0 1122334555677888888877665
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.53 E-value=0.0017 Score=85.14 Aligned_cols=146 Identities=10% Similarity=-0.073 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCC-------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHH
Q 000053 1788 LEKAGECFSLAGCYKLAADVYARGSF-------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQD 1860 (2576)
Q Consensus 1788 ~~~aAe~~e~~g~~~eAAelY~kagd-------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~ 1860 (2576)
+...|.++...|++++|.++|.++-. +-....+|.+.+.+++|++.+++.-...+.. ..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~ 311 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--------------PP 311 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--------------HH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--------------HH
Confidence 34555666666777777766666422 1122224445677777777777433222211 11
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHhc-CCHHHHHHHHHhccCHHHHHHHHHHc--------CCHHHHH
Q 000053 1861 FLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSK-GCFDELLVLEEESESFMDAANIARLR--------GDILRTV 1931 (2576)
Q Consensus 1861 ~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~~-~~~dea~ell~~~g~feeAa~ia~~~--------G~~~eA~ 1931 (2576)
.....+..|...|++..|.+.+...-.. .... ..+-.....+...|++++|.+.+.+. .-+..-+
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 385 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSL------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 2333455667788888887766532110 0000 01122334445566666665554320 1123345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 000053 1932 DLLQKVGNFKEACNLTLNYVLS 1953 (2576)
Q Consensus 1932 kly~~aG~~~eA~klll~~~~~ 1953 (2576)
.+|.+.|++++|.+.+-.-+-.
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHc
Confidence 5666677777777655544433
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.50 E-value=0.0037 Score=79.15 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=103.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhH-----HHHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcCCH-------
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYW-----EGRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKV------- 1759 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~-----~~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G~~------- 1759 (2576)
+|..+...|+|++|..+|+++-.... .....++. ..+. .....+.+++...|.+|.+++.+.++.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 169 (411)
T 4a1s_A 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG--NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL 169 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 45558889999999999998654210 11111111 1111 123446667777777777777776653
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHHHHhC-------Cc----hHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1760 DSAAKCFFDMGE-----------------YERAGTIYLERC-------EE----PELEKAGECFSLAGCYKLAADVYARG 1811 (2576)
Q Consensus 1760 ~~Aa~~y~kag~-----------------~~~A~ely~~~~-------~~----~~~~~aAe~~e~~g~~~eAAelY~ka 1811 (2576)
..-+.+|...|+ +++|.+.+.+.- +. ..+...|.++...|+|++|.+.|.++
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 233556666777 777777666531 11 24567788888899999988888775
Q ss_pred CC--------------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHH
Q 000053 1812 SF--------------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKS 1877 (2576)
Q Consensus 1812 gd--------------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~ 1877 (2576)
-. +.....+|...+.+++|.+.+++.-...+.. .........+...+..|.+.|++..
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--------GEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 32 2233345667788888888777322111000 0000111223344555666777777
Q ss_pred HHHHHH
Q 000053 1878 MMKFVR 1883 (2576)
Q Consensus 1878 A~~~~k 1883 (2576)
|.+.++
T Consensus 322 A~~~~~ 327 (411)
T 4a1s_A 322 AIEYHN 327 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 58
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.46 E-value=0.011 Score=72.56 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=72.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcCC----HHHH----------------
Q 000053 1763 AKCFFDMGEYERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGSF----LAEC---------------- 1817 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kagd----~~kA---------------- 1817 (2576)
+.+|...|++++|.+.+.+.. ....+...|.++...|++++|.+.|.++-. ...+
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 445566889999998887651 235678899999999999999999887522 1221
Q ss_pred HHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1818 LDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1818 i~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
..++.+.+.+++|+..+++.-...+.+. ..........+..+.+.|++..|++.+.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVA----------EYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCch----------HHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3457778899999999885443332220 0111112234455677888888877654
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0037 Score=81.27 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=38.4
Q ss_pred HHHHhhcHHHHHHHHHHcCC--hhH---HHHHHHHH----HHHHH---hHhhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 000053 1696 WLFYEQNYEMATICFEKAKD--TYW---EGRSKASG----LKAAA---DRISSSNPLEARIILREAAKIFEAIGKVDSAA 1763 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~ragd--~~~---~~l~~A~~----l~~~a---~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa 1763 (2576)
.++..|+|++|.++|+++-. +.. ..+...+. +.++. +.....+|.. ...+...|..|...|++++|.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHHHHHhhHHHHH
Confidence 38889999999999998643 111 11111111 00110 0111112211 124566677788888888887
Q ss_pred HHHHH
Q 000053 1764 KCFFD 1768 (2576)
Q Consensus 1764 ~~y~k 1768 (2576)
.+|.+
T Consensus 94 ~~~~~ 98 (514)
T 2gw1_A 94 FDLSV 98 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 60
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.32 E-value=0.0021 Score=80.12 Aligned_cols=219 Identities=9% Similarity=-0.014 Sum_probs=122.6
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHH
Q 000053 1673 EEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKI 1752 (2576)
Q Consensus 1673 ~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~ 1752 (2576)
..|...|.. ++..|+|++|..+|+++-.. .|.. ...+...|..
T Consensus 66 ~~~~~~~~~---------------~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~lg~~ 108 (365)
T 4eqf_A 66 PGAFEEGLK---------------RLKEGDLPVTILFMEAAILQ---------------------DPGD-AEAWQFLGIT 108 (365)
T ss_dssp TTHHHHHHH---------------HHHHTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHH
T ss_pred hHHHHHHHH---------------HHHCCCHHHHHHHHHHHHHh---------------------CcCC-HHHHHHHHHH
Confidence 347777766 88899999999999976321 1111 1234667777
Q ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHH-----------------
Q 000053 1753 FEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSFLA----------------- 1815 (2576)
Q Consensus 1753 fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~----------------- 1815 (2576)
|...|++++|.++|.+ |.++.. .....+...|.+|...|++++|.++|.++-...
T Consensus 109 ~~~~g~~~~A~~~~~~------al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 180 (365)
T 4eqf_A 109 QAENENEQAAIVALQR------CLELQP--NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLT 180 (365)
T ss_dssp HHHTTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------
T ss_pred HHHCCCHHHHHHHHHH------HHhcCC--CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHH
Confidence 8888888888877654 333311 123456778888888899999988887753211
Q ss_pred -HHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHH
Q 000053 1816 -ECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNF 1894 (2576)
Q Consensus 1816 -kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~ 1894 (2576)
....+|.+.+.+++|+++.++.-+..+... ........+..|.+.|++..|++.++..-....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 244 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMI------------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---- 244 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 113466677788888888885333322210 011222345567778999998887653211000
Q ss_pred HHhcCCHHHHHHHHHhccCHHHHHHHHHH----cCC----HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000053 1895 LNSKGCFDELLVLEEESESFMDAANIARL----RGD----ILRTVDLLQKVGNFKEACNLTLNYVLS 1953 (2576)
Q Consensus 1895 l~~~~~~dea~ell~~~g~feeAa~ia~~----~G~----~~eA~kly~~aG~~~eA~klll~~~~~ 1953 (2576)
.....+......+...|++++|...+.+ ... +..-+.+|.+.|++++|...+-.-+-+
T Consensus 245 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 245 -EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000122233445556666666555432 111 223445566667777777655554443
No 61
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.30 E-value=0.0047 Score=75.85 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=10.1
Q ss_pred hhcHHHHHHHHHHcCC
Q 000053 1700 EQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1700 ~~~ye~A~k~f~ragd 1715 (2576)
.++|+.|..+|.+++.
T Consensus 29 ~~~~~~A~~~~~~a~~ 44 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAV 44 (307)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3566677777766644
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.29 E-value=0.02 Score=71.66 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=101.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhH-----HHHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcCCH-------
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYW-----EGRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKV------- 1759 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~-----~~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G~~------- 1759 (2576)
+|..++..|+|+.|..+|+++-.... .....++. ..+. .....+.+++...+.+|.+++.+.+..
T Consensus 53 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 130 (406)
T 3sf4_A 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG--NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 45558889999999999988643211 11111111 1111 123345666677777777777766542
Q ss_pred HHHHHHHHHcCC--------------------HHHHHHHHHHhC-------Cc----hHHHHHHHHHHHcCCHHHHHHHH
Q 000053 1760 DSAAKCFFDMGE--------------------YERAGTIYLERC-------EE----PELEKAGECFSLAGCYKLAADVY 1808 (2576)
Q Consensus 1760 ~~Aa~~y~kag~--------------------~~~A~ely~~~~-------~~----~~~~~aAe~~e~~g~~~eAAelY 1808 (2576)
..-+.+|...|+ +++|.+.+.+.. +. ..+...|.++...|++++|.+.|
T Consensus 131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 233455566666 777766665431 11 23567788888888888888777
Q ss_pred HHcC-------C-------HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCC
Q 000053 1809 ARGS-------F-------LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLND 1874 (2576)
Q Consensus 1809 ~kag-------d-------~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd 1874 (2576)
.++- + +.....+|...+.+++|...+++.-...+.. .........+...+..|.+.|+
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------KDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--------cCchHHHHHHHHHHHHHHHhCc
Confidence 6642 2 2222335566778888887777322111000 0001112233345556677888
Q ss_pred hHHHHHHHH
Q 000053 1875 NKSMMKFVR 1883 (2576)
Q Consensus 1875 ~~~A~~~~k 1883 (2576)
+..|.+.+.
T Consensus 283 ~~~A~~~~~ 291 (406)
T 3sf4_A 283 YEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 63
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.28 E-value=0.019 Score=73.47 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=69.6
Q ss_pred HHHHHHcCCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcCC----HHHH----------------
Q 000053 1763 AKCFFDMGEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGSF----LAEC---------------- 1817 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kagd----~~kA---------------- 1817 (2576)
+.+|.+.|++++|.+.+.+. .....+...|.++...|++++|.++|.++-. ...+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 45556678888888877764 1234577889999999999999999987521 1111
Q ss_pred HHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1818 LDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1818 i~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
..+|.+.+.+++|+.++++.-...+.+. ..........+..+.+.|++..|++.+.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTEPSIA----------EYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCSSH----------HHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcch----------HHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4567778888988888884333222210 0001122334455666777777766554
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.27 E-value=0.02 Score=69.98 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHcCChhHHH-------HHHHHH----HHHHHhHhhcCChHHHHHHHHHHHHHHHHcCC
Q 000053 1690 IIFVCLWLFYEQNYEMATICFEKAKDTYWEG-------RSKASG----LKAAADRISSSNPLEARIILREAAKIFEAIGK 1758 (2576)
Q Consensus 1690 ~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~-------l~~A~~----l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~ 1758 (2576)
++|-...+|+.|+|+.|+..+++.....-.. +..++. ...+...+...++. ....+...+.+|...|+
T Consensus 2 ~l~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~-~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 2 ELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP-ELQAVRMFAEYLASHSR 80 (291)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCH-HHHHHHHHHHHHHCSTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCCh-hHHHHHHHHHHHcCCCc
Confidence 4566777899999999999988754321111 111110 11111122222222 12233444455555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhC---CchHHHHHHHHHHHcCCHHHHHHHHHHcCCHH---HHHHHHHcCCCHHHHHH
Q 000053 1759 VDSAAKCFFDMGEYERAGTIYLERC---EEPELEKAGECFSLAGCYKLAADVYARGSFLA---ECLDVCSKGKLFDIGLQ 1832 (2576)
Q Consensus 1759 ~~~Aa~~y~kag~~~~A~ely~~~~---~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~---kAi~~y~k~k~fd~A~~ 1832 (2576)
+++|++.+.++ ..... ....+...|..+...|++++|.++|.+.++.+ ....+|.+.|.+++|..
T Consensus 81 ~~~A~~~l~~l---------l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 81 RDAIVAELDRE---------MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHHHHHHHH---------HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH---------HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55554444321 00000 11234456677777777777777777744433 22345666777777777
Q ss_pred HHHhhh
Q 000053 1833 YISYWK 1838 (2576)
Q Consensus 1833 l~r~~~ 1838 (2576)
.+++..
T Consensus 152 ~l~~~~ 157 (291)
T 3mkr_A 152 ELKKMQ 157 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777543
No 65
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.25 E-value=0.013 Score=71.09 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.2
Q ss_pred HHHhhcHHHHHHHHHHcC
Q 000053 1697 LFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~rag 1714 (2576)
++..|+|++|..+|+++-
T Consensus 31 ~~~~~~~~~A~~~~~~~~ 48 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVC 48 (327)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 778899999999998864
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.23 E-value=0.03 Score=70.49 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCC
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
.+|..+...|+|+.|..+|++|-.
T Consensus 148 ~lg~~~~~~~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 148 KMSESYYYMKQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678889999999999998654
No 67
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.01 Score=76.98 Aligned_cols=21 Identities=5% Similarity=-0.316 Sum_probs=17.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHc
Q 000053 1693 VCLWLFYEQNYEMATICFEKA 1713 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ra 1713 (2576)
+|..+...|+|++|..+|+++
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 344488899999999999986
No 68
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.19 E-value=0.011 Score=73.19 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=15.7
Q ss_pred HHHhhcHHHHHHHHHHcC
Q 000053 1697 LFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~rag 1714 (2576)
+...|+|++|..+|+++-
T Consensus 74 ~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 788999999999999864
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.0069 Score=72.84 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=77.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..+...|+|++|..+|+++-..... ....+.......+...|..|...|++++|.++|.+
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---- 94 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEK--------------TSGHDHPDVATMLNILALVYRDQNKYKDAANLLND---- 94 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH--------------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH--------------HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----
Confidence 344588899999999999976442100 00001111122344455555556666666555433
Q ss_pred HHHHHHHHHh--CC----chHHHHHHHHHHHcCCHHHHHHHHHHcCCH----------------HHHHHHHHcCCCHHHH
Q 000053 1773 ERAGTIYLER--CE----EPELEKAGECFSLAGCYKLAADVYARGSFL----------------AECLDVCSKGKLFDIG 1830 (2576)
Q Consensus 1773 ~~A~ely~~~--~~----~~~~~~aAe~~e~~g~~~eAAelY~kagd~----------------~kAi~~y~k~k~fd~A 1830 (2576)
|.+++.+. .+ ...+...|.++...|++++|.++|.++-.. .....+|.+.+.+++|
T Consensus 95 --al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 95 --ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp --HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 23332221 00 012344555555556666555555543221 1112234455556666
Q ss_pred HHHHHhhhhc----CCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHH
Q 000053 1831 LQYISYWKQH----ADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1831 ~~l~r~~~~~----~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
++++++.-.. ...+ ...........+..|.+.|+++.|.+.+..
T Consensus 173 ~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPD----------DPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHTSCTT----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6555521110 0000 001112233455667778999988887764
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.12 E-value=0.02 Score=66.91 Aligned_cols=114 Identities=16% Similarity=-0.004 Sum_probs=69.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..+...|+|++|..+|+++-... |.. ...+...|..|...|++++|.++|.++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~---------------------~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a--- 97 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEID---------------------PSS-ADAHAALAVVFQTEMEPKLADEEYRKA--- 97 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC---------------------CCh-HHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 3445888999999999999753211 100 123455677777777777777766542
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC----H------HHHHHHHHcCCCHHHHHHHHHh
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF----L------AECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd----~------~kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
.++.. .....+...|.++...|++++|.++|.++-. . .....+|.+.+.+++|..++++
T Consensus 98 ---~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 98 ---LASDS--RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp ---HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHCc--CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22211 1223456677778888888888888877533 1 1222345566677777776663
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.07 E-value=0.007 Score=71.56 Aligned_cols=231 Identities=11% Similarity=-0.048 Sum_probs=119.5
Q ss_pred HHHhhcHHHHHHHHHHcCChh---HHHHHHHHH-HHHHHhHhhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHcCC
Q 000053 1697 LFYEQNYEMATICFEKAKDTY---WEGRSKASG-LKAAADRISSSNPLEARIILREAAKIFEAI-GKVDSAAKCFFDMGE 1771 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~---~~~l~~A~~-l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~-G~~~~Aa~~y~kag~ 1771 (2576)
+..+++|++|..+|+++-... -.....++. +... .....+.+++...|.+|.+..-.. .-+..-+.+|...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL--YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHH--HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 455789999999999866531 011111111 1111 112234444544555544432111 012334556666777
Q ss_pred HHHHHHHHHHhC-----CchHHHHHHHHHHHcCCHHHHHHHHHHcCC-----H--HHHHHHHHcCCCHHHHHHHHHhhhh
Q 000053 1772 YERAGTIYLERC-----EEPELEKAGECFSLAGCYKLAADVYARGSF-----L--AECLDVCSKGKLFDIGLQYISYWKQ 1839 (2576)
Q Consensus 1772 ~~~A~ely~~~~-----~~~~~~~aAe~~e~~g~~~eAAelY~kagd-----~--~kAi~~y~k~k~fd~A~~l~r~~~~ 1839 (2576)
+++|.+.+.+.. ....+...|.++...|++++|.+.|.++-. . ...+.++...+.+++|+..+++.-.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777666541 235677889999999999999999987522 1 1222344455778888888864333
Q ss_pred cCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHh-CcHHHHHHHHHhcCCHHHHHHHHHhccCHHHHH
Q 000053 1840 HADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAF-HSMDLIRNFLNSKGCFDELLVLEEESESFMDAA 1918 (2576)
Q Consensus 1840 ~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~-~~~e~a~~~l~~~~~~dea~ell~~~g~feeAa 1918 (2576)
..+... ..-..+..+...++...|.+.++.. ........ .....+-.....+...|++++|.
T Consensus 173 ~~~~~~---------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 173 KSDKEQ---------------WGWNIVEFYLGNISEQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HSCCCS---------------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcch---------------HHHHHHHHHHHhcCHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHcCCHHHHH
Confidence 222220 0011233344556666666665532 22111000 00112223445556667777776
Q ss_pred HHHHH-----cCCHHHHHHHHHHcCCHHHHHHH
Q 000053 1919 NIARL-----RGDILRTVDLLQKVGNFKEACNL 1946 (2576)
Q Consensus 1919 ~ia~~-----~G~~~eA~kly~~aG~~~eA~kl 1946 (2576)
..+.+ -+.+......+..-|++++|...
T Consensus 236 ~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 236 ALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHTTCCTTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHH
Confidence 66543 23345556666677777777664
No 72
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.06 E-value=0.0043 Score=72.14 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.2
Q ss_pred HHHhhcHHHHHHHHHHcC
Q 000053 1697 LFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~rag 1714 (2576)
+...|+|++|..+|+++-
T Consensus 15 ~~~~g~~~~A~~~~~~al 32 (217)
T 2pl2_A 15 LYALGRYDAALTLFERAL 32 (217)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 888999999999999854
No 73
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.05 E-value=0.02 Score=74.91 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=98.4
Q ss_pred HHHHhhcHHHHHHHHHHcCChhH------HHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1696 WLFYEQNYEMATICFEKAKDTYW------EGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDM 1769 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~ragd~~~------~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~ka 1769 (2576)
+....++|++|..+|+++-...- ...+.++...... .....+.+++...|.+|.+..-...-+-.-+.+|...
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF-HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Confidence 34456789999999998644211 1111111111000 1122334444444444433211111122234455556
Q ss_pred CCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHHHh
Q 000053 1770 GEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1770 g~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
|++++|.+.+.+. .....+...|.++...|++++|.+.|.++-. +.....+|.+.|.+++|+.++++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766654 1234577889999999999999999987522 22344577788899999999885
Q ss_pred hhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHH
Q 000053 1837 WKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1837 ~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
.-...+.. .......+..+.+.|++..|.+.+..
T Consensus 370 ~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 370 TKLKFPTL--------------PEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHCTTC--------------THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCC--------------hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44332222 11222345667788999998887764
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.01 E-value=0.018 Score=69.36 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=116.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhH-----HHHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcCCH-------
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYW-----EGRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKV------- 1759 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~-----~~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G~~------- 1759 (2576)
+|..+...|+|++|..+|+++-.... .....++ ...+. .....+.+++...+.+|.+++.+.+..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 126 (338)
T 3ro2_A 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS--GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 126 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 55668889999999999987644211 0111111 11111 123446666777777777777776652
Q ss_pred HHHHHHHHHcCC--------------------HHHHHHHHHHh-------CCc----hHHHHHHHHHHHcCCHHHHHHHH
Q 000053 1760 DSAAKCFFDMGE--------------------YERAGTIYLER-------CEE----PELEKAGECFSLAGCYKLAADVY 1808 (2576)
Q Consensus 1760 ~~Aa~~y~kag~--------------------~~~A~ely~~~-------~~~----~~~~~aAe~~e~~g~~~eAAelY 1808 (2576)
..-+.+|...|+ +++|.+.+.+. .+. ..+...|.++...|++++|.+.|
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 233556666677 77777666543 111 23556777888888888888877
Q ss_pred HHcCCH--------------HHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCC
Q 000053 1809 ARGSFL--------------AECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLND 1874 (2576)
Q Consensus 1809 ~kagd~--------------~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd 1874 (2576)
.++-.. .....+|...+.+++|.+++++.-...+.. .........+...+..|...|+
T Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------KDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--------cchhHHHHHHHHHHHHHHHhcC
Confidence 764321 122234455667777777766321110000 0000111223334555666777
Q ss_pred hHHHHHHHHHhCcHHHHHHHHHhcCCHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1875 NKSMMKFVRAFHSMDLIRNFLNSKGCFDELLVLEEESESFMDAANIARLRGDILRTVDLLQKV 1937 (2576)
Q Consensus 1875 ~~~A~~~~k~~~~~e~a~~~l~~~~~~dea~ell~~~g~feeAa~ia~~~G~~~eA~kly~~a 1937 (2576)
+..|.+.++. +.+.....+........ +..-+.++...|++++|.+.|.++
T Consensus 279 ~~~A~~~~~~------a~~~~~~~~~~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 279 YEKAIDYHLK------HLAIAQELKDRIGEGRA------CWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHH------HHHHHHHHTCHHHHHHH------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHhcCCcHHHHHH------HHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777665532 22222222221111111 111255566777777777777654
No 75
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.01 E-value=0.0043 Score=77.04 Aligned_cols=173 Identities=12% Similarity=-0.016 Sum_probs=90.9
Q ss_pred HHHHHHcCCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcCCHH----------------------
Q 000053 1763 AKCFFDMGEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGSFLA---------------------- 1815 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~~---------------------- 1815 (2576)
+.+|...|++++|.+.+.+. .....+...|.++...|++++|.+.|.++-...
T Consensus 105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 44555555555555555543 123456778888888999999988888632100
Q ss_pred -HHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHH
Q 000053 1816 -ECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNF 1894 (2576)
Q Consensus 1816 -kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~ 1894 (2576)
..+..+...+.+++|+.++++.-...+... ....+...+..|.+.|++..|++.+...-...
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----- 247 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSI------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----- 247 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 012222356677778777774333222210 01123334556777899998888765321100
Q ss_pred HHh-cCCHHHHHHHHHhccCHHHHHHHHHHc-----CC---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000053 1895 LNS-KGCFDELLVLEEESESFMDAANIARLR-----GD---ILRTVDLLQKVGNFKEACNLTLNYVLS 1953 (2576)
Q Consensus 1895 l~~-~~~~dea~ell~~~g~feeAa~ia~~~-----G~---~~eA~kly~~aG~~~eA~klll~~~~~ 1953 (2576)
.. ...+-....++...|++++|...+.+. +. +..-+.+|.+.|++++|...+-..+-.
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 001122234445566666665554321 11 223455666677777777755544433
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.99 E-value=0.023 Score=67.08 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCChh------HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCC----HHH
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKDTY------WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGK----VDS 1761 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd~~------~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~----~~~ 1761 (2576)
-.|+.++..|+|++|..+|+++-... +..+...+ ....+.+++...|.+|.+.-....- +..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~--------~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY--------YELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHH--------HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34566899999999999999863211 11111111 1112333333333333331100011 233
Q ss_pred HHHHHHHcCCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcCCH---------HHHHHHHHcCCCH
Q 000053 1762 AAKCFFDMGEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGSFL---------AECLDVCSKGKLF 1827 (2576)
Q Consensus 1762 Aa~~y~kag~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kagd~---------~kAi~~y~k~k~f 1827 (2576)
-+.+|...|++++|.+.+.+. .....+...|.++...|++++|.+.|.++-.. ..+..+|.+ +.+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHH
Confidence 345555556666665555543 12356778888888889999998888885431 122133333 378
Q ss_pred HHHHHHHHh
Q 000053 1828 DIGLQYISY 1836 (2576)
Q Consensus 1828 d~A~~l~r~ 1836 (2576)
++|++.+++
T Consensus 159 ~~A~~~~~~ 167 (272)
T 3u4t_A 159 VKADSSFVK 167 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887774
No 77
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.84 E-value=0.15 Score=66.66 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHc---CCHHHHHHHHHHHHHHHhhcCCCCCCCCccccccHHHHHHHHHHHH
Q 000053 1924 RGDILRTVDLLQKV---GNFKEACNLTLNYVLSNSLWSSGSKGWPLKQFTQKKELLEKAKLLA 1983 (2576)
Q Consensus 1924 ~G~~~eA~kly~~a---G~~~eA~klll~~~~~~~lw~~~~~g~~~~~~~~~~~l~~~~~~~~ 1983 (2576)
.+++.+|.+.|.+| |.. +|.- .|-.++.+.+ |++ +.+-+=...+++|.+.-
T Consensus 380 ~~~~~~A~~~~~~A~~~~~~-~a~~-~Lg~~y~~g~------g~~-~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQGLS-AAQV-QLGEIYYYGL------GVE-RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCH-HHHH-HHHHHHHHTS------SSC-CCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCH-HHHH-HHHHHHHcCC------CCC-CCHHHHHHHHHHHHHCC
Confidence 67888888888776 543 3322 2223333321 433 45566667777777665
No 78
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.84 E-value=0.043 Score=66.39 Aligned_cols=181 Identities=14% Similarity=0.041 Sum_probs=94.9
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcC-ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHcCC
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSS-NPLEARIILREAAKIFEAIG-KVDSAAKCFFDMGE 1771 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~-~~~~a~~~~~eAA~~fe~~G-~~~~Aa~~y~kag~ 1771 (2576)
+..+...|++++|..+|+++-...-.....-+.+... ..... ..+++...|.+|.+...... -+..-+.+|...|+
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY--YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH--HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 3447778999999999988643111000000000000 01112 33334334444333221111 12333455556666
Q ss_pred HHHHHHHHHHh---C--CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHHHhhh
Q 000053 1772 YERAGTIYLER---C--EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYISYWK 1838 (2576)
Q Consensus 1772 ~~~A~ely~~~---~--~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~r~~~ 1838 (2576)
+++|.+.+.+. . ....+...|.++...|++++|.++|.++-. +.....+|.+.+.+++|...+++.-
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 66666665543 1 124566789999999999999999988432 2234456778888999998888432
Q ss_pred hcCCcc--cccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1839 QHADTD--VGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1839 ~~~~~~--~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
...+.. ....+.. ...+...+..|.+.|++..|.+.++
T Consensus 221 ~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 221 EKIKAIGNEVTVDKW-------EPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHTTTSCSCTTTTC-------CHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhccccccccHH-------HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 221100 0000000 1122334555677888887777654
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.77 E-value=0.025 Score=70.34 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCH-----------HHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKV-----------DSAA 1763 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~-----------~~Aa 1763 (2576)
..+...|+|++|..+|+++-...-.....-..+... .....+.+++...|.+|.++....... ..-+
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVS--YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHH
Confidence 338889999999999998643211000000000000 011223334444444443332221110 0114
Q ss_pred HHHHHcCCHHHHHHHHHHhC-------CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHH
Q 000053 1764 KCFFDMGEYERAGTIYLERC-------EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFD 1828 (2576)
Q Consensus 1764 ~~y~kag~~~~A~ely~~~~-------~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd 1828 (2576)
.+|.+.|++++|.++|.+.. ....+...|.++...|++++|.++|.++-. +.....+|.+.|.++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 45555666666666665541 223455666666667777777766665311 122333455556666
Q ss_pred HHHHHHH
Q 000053 1829 IGLQYIS 1835 (2576)
Q Consensus 1829 ~A~~l~r 1835 (2576)
+|+..++
T Consensus 265 ~A~~~~~ 271 (365)
T 4eqf_A 265 EAVEAYT 271 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 80
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.71 E-value=0.1 Score=68.21 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHhCC---chHHHHHHHHHHH----cCCHHHHHHHHHHc---CCHH---HHHHHHHcC-----CCHHHH
Q 000053 1769 MGEYERAGTIYLERCE---EPELEKAGECFSL----AGCYKLAADVYARG---SFLA---ECLDVCSKG-----KLFDIG 1830 (2576)
Q Consensus 1769 ag~~~~A~ely~~~~~---~~~~~~aAe~~e~----~g~~~eAAelY~ka---gd~~---kAi~~y~k~-----k~fd~A 1830 (2576)
.+++++|.++|.+..+ .......|.+|.. .+++++|.+.|.++ |+.+ ..-.+|.++ +.+++|
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 4667777777666432 2334566666666 67777777777764 2322 122245555 677777
Q ss_pred HHHHHh
Q 000053 1831 LQYISY 1836 (2576)
Q Consensus 1831 ~~l~r~ 1836 (2576)
+...++
T Consensus 316 ~~~~~~ 321 (490)
T 2xm6_A 316 ISWYTK 321 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777663
No 81
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.69 E-value=0.06 Score=64.11 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHH-HHHHHHhHhh----cCChHHHHHHHHHHHHHHHHcCCH---HHHHH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKAS-GLKAAADRIS----SSNPLEARIILREAAKIFEAIGKV---DSAAK 1764 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~-~l~~~a~~l~----~~~~~~a~~~~~eAA~~fe~~G~~---~~Aa~ 1764 (2576)
+|..++..+++++|.++|+++-..... .++ .+.... .. ..+.+++...|.+|++. +.. -.-+.
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~--~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 82 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLKEN---SGCFNLGVLY--YQGQGVEKNLKKAASFYAKACDL----NYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCH---HHHHHHHHHH--HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHH--HcCCCcCCCHHHHHHHHHHHHHC----CCHHHHHHHHH
Confidence 445588899999999999987553211 111 111000 11 33444555555555443 221 12234
Q ss_pred HHHH----cCCHHHHHHHHHHhC---CchHHHHHHHHHHH----cCCHHHHHHHHHH
Q 000053 1765 CFFD----MGEYERAGTIYLERC---EEPELEKAGECFSL----AGCYKLAADVYAR 1810 (2576)
Q Consensus 1765 ~y~k----ag~~~~A~ely~~~~---~~~~~~~aAe~~e~----~g~~~eAAelY~k 1810 (2576)
+|.. .+++++|.+.|.+.. ....+...|.+|.. .|++++|.+.|.+
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 5555 666666666665531 22344556666666 6666666666655
No 82
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.60 E-value=0.12 Score=58.42 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=64.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..++..|+|++|.++|+++-...- .. ...+...|..|...|++++|.++|.++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a--- 68 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSDP------------------KN----ELAWLVRAEIYQYLKVNDKAQESFRQA--- 68 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCc------------------cc----hHHHHHHHHHHHHcCChHHHHHHHHHH---
Confidence 34448889999999999997532110 01 113455566667777777777666442
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHc-CCHHHHHHHHHHcCC----------HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLA-GCYKLAADVYARGSF----------LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~-g~~~eAAelY~kagd----------~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
.++.. .....+...|.++... |++++|.++|.++-. +-....+|.+.+.+++|+..++
T Consensus 69 ---~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 69 ---LSIKP--DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ---HHHCT--TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHhCC--CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22211 1123455566666777 777777777766322 1222334555666666666655
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.56 E-value=0.096 Score=65.86 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCC
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
-+|..+...|+|+.|..+|++|-+
T Consensus 146 ~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 146 KVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 366778889999999999998654
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.56 E-value=0.46 Score=59.15 Aligned_cols=252 Identities=10% Similarity=0.005 Sum_probs=134.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHcCC----hhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHH------
Q 000053 1691 IFVCLWLFYEQNYEMATICFEKAKD----TYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVD------ 1760 (2576)
Q Consensus 1691 ~~~~~~l~~~~~ye~A~k~f~ragd----~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~------ 1760 (2576)
++.|..+...|++++|...++++-. ........+..... .-.....+.+++...+.+|.++....|...
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG-EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4567778889999999999998522 11111111111100 011234567777888888888888887653
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHhC-------C---c---hHHHHHHHHHHHcCCHHHHHHHHHHcCC-------------
Q 000053 1761 -SAAKCFFDMGEYERAGTIYLERC-------E---E---PELEKAGECFSLAGCYKLAADVYARGSF------------- 1813 (2576)
Q Consensus 1761 -~Aa~~y~kag~~~~A~ely~~~~-------~---~---~~~~~aAe~~e~~g~~~eAAelY~kagd------------- 1813 (2576)
.-+.+|...|++++|.+.|.+.- + . ..+...|..+...|++++|.++|.++-.
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 23566777888888888777541 1 1 1234567788889999999988887421
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHH
Q 000053 1814 LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRN 1893 (2576)
Q Consensus 1814 ~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~ 1893 (2576)
+.....++...|.+++|...+++........ . ....+.. ......+..+...|++..|.+.+...........
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNG-K-YHSDWIS-----NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-cchhHHH-----HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 1223345667788888888887432211000 0 0000000 0000122335678888888887765322110000
Q ss_pred HHHhcCCHHHHHHHHHhccCHHHHHHHHH-------HcCCHH-------HHHHHHHHcCCHHHHHHHHHHHH
Q 000053 1894 FLNSKGCFDELLVLEEESESFMDAANIAR-------LRGDIL-------RTVDLLQKVGNFKEACNLTLNYV 1951 (2576)
Q Consensus 1894 ~l~~~~~~dea~ell~~~g~feeAa~ia~-------~~G~~~-------eA~kly~~aG~~~eA~klll~~~ 1951 (2576)
.... ..+.....++...|++++|...+. ..|... ..+.+|...|++++|...+-.-+
T Consensus 250 ~~~~-~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 250 HFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp GGGH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0000 001122344455566655544432 333222 12445556688877776544443
No 85
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.39 E-value=0.074 Score=59.10 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=63.4
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYE 1773 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~ 1773 (2576)
|..+...|+|++|.++|+++=.. +|.. ...+...|..|.+.|++++|..++.++
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~la~~~~~~~~~~~a~~~~~~~---- 65 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKA---------------------DPNN-VETLLKLGKTYMDIGLPNDAIESLKKF---- 65 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH----
Confidence 34488899999999999975321 1111 112355566667777777776655432
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1774 RAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1774 ~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
..... .....+...|..+...+++.+|.+.+.++-. +...-.+|.+.|.+++|++..+
T Consensus 66 --~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (184)
T 3vtx_A 66 --VVLDT--TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131 (184)
T ss_dssp --HHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HhcCc--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH
Confidence 21100 1123455566667777777777766665322 1122234555666666666666
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.39 E-value=0.056 Score=63.52 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 000053 1863 QSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1863 e~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
...+..|.+.|++..|.+.+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3345567778999888887754
No 87
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.038 Score=64.24 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=73.6
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH--------
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCF-------- 1766 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y-------- 1766 (2576)
..+...|+|++|.++|+++-...-... .+.......+...|..|...|++++|.++|
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMR---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccc---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 338889999999999998543211100 000001123344445555555555554444
Q ss_pred -----HHcCCHHHHHHHHHHhC--C---chHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHH
Q 000053 1767 -----FDMGEYERAGTIYLERC--E---EPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFD 1828 (2576)
Q Consensus 1767 -----~kag~~~~A~ely~~~~--~---~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd 1828 (2576)
.+.|++++|.+.+.+.. . ...+...|.++...|++++|.+.|.++-. +.....+|.+.+.++
T Consensus 111 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH
Confidence 34555666666665531 1 13456777888888888888888877421 223344566677777
Q ss_pred HHHHHHHh
Q 000053 1829 IGLQYISY 1836 (2576)
Q Consensus 1829 ~A~~l~r~ 1836 (2576)
+|+..+++
T Consensus 191 ~A~~~~~~ 198 (258)
T 3uq3_A 191 EAIADCNK 198 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777773
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.31 E-value=0.02 Score=66.28 Aligned_cols=137 Identities=15% Similarity=0.027 Sum_probs=57.2
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHcCCHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIG-KVDSAAKCFFDMGEYERA 1775 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G-~~~~Aa~~y~kag~~~~A 1775 (2576)
++..|+|++|..+|+++-...-........+... .....+.+++...|.++.+...... -+..-+.+|...|++++|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANL--LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 7789999999999998743111000000000000 0112233334334444333321111 112234455555555555
Q ss_pred HHHHHHh---C--CchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1776 GTIYLER---C--EEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1776 ~ely~~~---~--~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
.+.+.+. . ....+...|.++...|++++|.++|.++-. +.....+|.+.+.+++|...++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555543 1 123455666677777777777777666321 1122234445556666666665
No 89
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.26 E-value=0.089 Score=58.44 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHH
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAE 1816 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~k 1816 (2576)
.|...|..|.+.|++++|+++|.+ |.++-. .....+...|.++.+.|++++|.+.+.++-. +..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~------al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKK------VLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 567788888888999998877764 444411 1224567778888888888888887776422 112
Q ss_pred HHHHHHcCCCHHHHHHHHHh
Q 000053 1817 CLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1817 Ai~~y~k~k~fd~A~~l~r~ 1836 (2576)
...++...+.++.|.....+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 22344456666666666663
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.12 E-value=0.2 Score=58.33 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC----
Q 000053 1738 NPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF---- 1813 (2576)
Q Consensus 1738 ~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd---- 1813 (2576)
+|......+...|..|...|++++|.++|.++ .++.. .....+...|.++...|++++|.++|.++-.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKA------LEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHH------HhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45444556677778888888888888777642 22211 1234566788889999999999999887422
Q ss_pred ----HHHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHH
Q 000053 1814 ----LAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMD 1889 (2576)
Q Consensus 1814 ----~~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e 1889 (2576)
+.....+|.+.+.+++|.+++++.-.. +.. +.. .......+..+.+.|+++.|.+.+...-.
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 169 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLY----PER-------SRVFENLGLVSLQMKKPAQAKEYFEKSLR-- 169 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTC----TTH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccC----ccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 123345677888999999998854330 000 011 11223345566778999988887653211
Q ss_pred HHHHHHHh-cCCHHHHHHHHHhccCHHHHHHHHHHc-----CC---HHHHHHHHHHcCCHHHHHHHH
Q 000053 1890 LIRNFLNS-KGCFDELLVLEEESESFMDAANIARLR-----GD---ILRTVDLLQKVGNFKEACNLT 1947 (2576)
Q Consensus 1890 ~a~~~l~~-~~~~dea~ell~~~g~feeAa~ia~~~-----G~---~~eA~kly~~aG~~~eA~kll 1947 (2576)
.... ...+-....++...|++++|...+.+. .. +...+.+|...|++++|.+.+
T Consensus 170 ----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 170 ----LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp ----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0000 000122334445556666665554321 11 123344555566666665543
No 91
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.06 E-value=0.076 Score=64.10 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHHHhhcHHHHHHHHHHcC
Q 000053 1696 WLFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~rag 1714 (2576)
.+...|+|++|.++|+++-
T Consensus 64 ~~~~~~~~~~A~~~~~~a~ 82 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHAR 82 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3677788888888888753
No 92
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.03 E-value=0.076 Score=61.46 Aligned_cols=23 Identities=13% Similarity=-0.162 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1788 LEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1788 ~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+...|.++...|++++|.+.|.+
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~ 64 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKT 64 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 93
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.00 E-value=0.093 Score=63.96 Aligned_cols=146 Identities=15% Similarity=0.067 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHH---HHHHHH
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSA---AKCFFD 1768 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~A---a~~y~k 1768 (2576)
.+|..+...|++++|.++|++.++.... ...+.- .+....++++...|.++.+.....-....+ ..++..
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~~~~~~~~-~~l~~~------~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQGDSLECM-AMTVQI------LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCSHHHH-HHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCHHHH-HHHHHH------HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC
Confidence 4455588899999999999983332111 111100 112234444544555544432110000111 122333
Q ss_pred cCCHHHHHHHHHHh---C--CchHHHHHHHHHHHcCCHHHHHHHHHHcC-----CH---HHHHHHHHcCCCHHH-HHHHH
Q 000053 1769 MGEYERAGTIYLER---C--EEPELEKAGECFSLAGCYKLAADVYARGS-----FL---AECLDVCSKGKLFDI-GLQYI 1834 (2576)
Q Consensus 1769 ag~~~~A~ely~~~---~--~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d~---~kAi~~y~k~k~fd~-A~~l~ 1834 (2576)
.|++++|..+|.+. . +...+...|.++.+.|++++|.+.|.++= +. -....++...|.+++ +.+++
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 46677777666654 1 22456778888888999999988888732 11 122224444555544 55676
Q ss_pred HhhhhcCCcc
Q 000053 1835 SYWKQHADTD 1844 (2576)
Q Consensus 1835 r~~~~~~~~~ 1844 (2576)
++..+..+.+
T Consensus 259 ~~~~~~~P~~ 268 (291)
T 3mkr_A 259 SQLKDAHRSH 268 (291)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCC
Confidence 6555444443
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.96 E-value=0.28 Score=58.63 Aligned_cols=128 Identities=12% Similarity=0.050 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhC--C----chHHHHHHHHHHHcCCHHHHHHHHHHcCCH----
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERC--E----EPELEKAGECFSLAGCYKLAADVYARGSFL---- 1814 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~--~----~~~~~~aAe~~e~~g~~~eAAelY~kagd~---- 1814 (2576)
.+...|..|...|++++|..+|.+ |.+++.+.. + ...+...|.++...|++++|.++|.++-..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQ------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666655543 222222210 0 122445566666666666666665553211
Q ss_pred ------------HHHHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHH
Q 000053 1815 ------------AECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFV 1882 (2576)
Q Consensus 1815 ------------~kAi~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~ 1882 (2576)
.....+|...+.+++|.+++++.-.......+ .. .......+...+..|...|++..|.+.+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--KD----HPDVAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC--CC----ChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11122444566666666666621111000000 00 0011123344566677889999888776
Q ss_pred HH
Q 000053 1883 RA 1884 (2576)
Q Consensus 1883 k~ 1884 (2576)
..
T Consensus 177 ~~ 178 (311)
T 3nf1_A 177 QR 178 (311)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 95
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.87 E-value=0.32 Score=57.12 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC-------
Q 000053 1741 EARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF------- 1813 (2576)
Q Consensus 1741 ~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd------- 1813 (2576)
.....+...|..|...|++++|.++|.+ |.++.. .....+...|.++...|++++|.++|.++-.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~------al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 112 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQ------ALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHH------HHHcCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence 3344556667777777777777766543 333311 1234577889999999999999999987432
Q ss_pred -HHHHHHHHHcCCCHHHHHHHHHhhhh
Q 000053 1814 -LAECLDVCSKGKLFDIGLQYISYWKQ 1839 (2576)
Q Consensus 1814 -~~kAi~~y~k~k~fd~A~~l~r~~~~ 1839 (2576)
+-....+|.+.|.+++|+..+++.-.
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12334467788899999999885443
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.85 E-value=0.01 Score=68.26 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
...+|+||||||||+++..+...+...+.+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67899999999999999999888888888877654
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.80 E-value=0.21 Score=59.07 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=61.7
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
.+++.+...|.. ++..|+|++|..+|+++-...- .++ .....+...
T Consensus 13 ~~~~~~~~~a~~---------------~~~~g~~~~A~~~~~~~l~~~p------------------~~~-~~~~a~~~l 58 (261)
T 3qky_A 13 SSPQEAFERAME---------------FYNQGKYDRAIEYFKAVFTYGR------------------THE-WAADAQFYL 58 (261)
T ss_dssp SSHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHGGGCS------------------CST-THHHHHHHH
T ss_pred CCHHHHHHHHHH---------------HHHhCCHHHHHHHHHHHHHhCC------------------CCc-chHHHHHHH
Confidence 456677777766 8889999999999997643210 010 112235667
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCC-chHHHHHHHHHHH--------cCCHHHHHHHHHH
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCE-EPELEKAGECFSL--------AGCYKLAADVYAR 1810 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~-~~~~~~aAe~~e~--------~g~~~eAAelY~k 1810 (2576)
|..|...|++++|+.+|.+ +.+++..... ...+...|.++.. .|++.+|.+.|.+
T Consensus 59 g~~~~~~~~~~~A~~~~~~------~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYER------FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHH------HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHH------HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 7788888888888876653 4444322000 1234456666666 6666666666554
No 98
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.67 E-value=0.15 Score=58.61 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1787 ELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1787 ~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
.+...|.++...|++++|.+.|.++-. +.....+|.+.+.+++|..+++
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345566666666666666666665311 1122234445555666665555
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.49 E-value=0.0091 Score=68.64 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..++..+...+...--+|+||||||||+++.+++..+
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555544444568999999999999998887665
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.45 E-value=0.2 Score=54.56 Aligned_cols=114 Identities=11% Similarity=-0.032 Sum_probs=66.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..+...|+|++|..+|+++-...-. + ...+...|..|...|++++|.++|.++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~----~~~~~~~~~~~~~~~~~~~A~~~~~~~--- 68 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAF------------------D----VDVALHLGIAYVKTGAVDRGTELLERS--- 68 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSC------------------C----HHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc------------------C----hHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 455588899999999999987653111 0 112345566666667777766655432
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcC-----C---HHHHHHHHHcCCCHHHHHHHHHh
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGS-----F---LAECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d---~~kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
.++.. .....+...|.++...|++++|.++|.++- + +.....+|.+.+.+++|.+++++
T Consensus 69 ---~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 69 ---LADAP--DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ---HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 22210 112345566777777777777777776631 1 11223355566667777776663
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.43 E-value=0.012 Score=67.05 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||||+|||+++..++..+...|.++++..|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 35889999999999999999999999999999999887
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.42 E-value=0.17 Score=59.33 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCC
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
+|..+...|+|++|..+|+++-.
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~ 71 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALA 71 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 45668889999999999997643
No 103
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.42 E-value=0.029 Score=64.47 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=60.6
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. ..+++-|.+++.. ..+++|.|+.|||||.+.+.-++.. +...
T Consensus 6 ~~l~~~l~~~l~~~--~~-----~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~-----l~~~------- 66 (207)
T 2gxq_A 6 FPLKPEILEALHGR--GL-----TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER-----LAPS------- 66 (207)
T ss_dssp SCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----CCCC-------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHH-----Hhhc-------
Confidence 35667776666432 11 4689999999943 4589999999999999877666421 1100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.......++|+++.++.++.++.+.+.++
T Consensus 67 ------------~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 67 ------------QERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp ------------CCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred ------------cccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 00122368999999999999998877765
No 104
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.38 E-value=0.04 Score=64.52 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=60.7
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+...+... +. ..+++-|.+++. ...+++|.|+.|||||.+.+.-++.. +..+.
T Consensus 25 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~-----l~~~~------ 86 (228)
T 3iuy_A 25 FQQYPDLLKSIIRV--GI-----LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIH-----LDSQP------ 86 (228)
T ss_dssp HTTCHHHHHHHHHH--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HC---------
T ss_pred hccCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----HHhcc------
Confidence 45667777766542 21 368999999994 34589999999999999876655421 11000
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.........++|+++.++.+|.++.+.+.++
T Consensus 87 ----------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 87 ----------ISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp ----------------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred ----------chhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 0001123478999999999999998887765
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.36 E-value=0.017 Score=65.23 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHH-hCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll-~~~~rVLv~A 262 (2576)
....+|+||||||||+++..+...+. ..|.+++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56889999999999999999888887 6677776654
No 106
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.33 E-value=0.011 Score=68.39 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC------CCeEEEEecChHHHHH-HHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM------KFRTLVCTPTIVAIKE-LASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~------~~rVLv~ApTN~AVd~-V~~RL~~l 278 (2576)
...+..+++. .-.+|+||+|||||.+....+..++.. +.++|+++||...+++ +.+.+.++
T Consensus 39 ~~~i~~~~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 39 MEVAQPALEG----KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp HHHHHHHHTT----CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred HHHHHHHhcC----CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3445555542 358999999999999998887777653 6799999999998888 44444433
No 107
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.32 E-value=0.011 Score=73.06 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHH-hCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll-~~~~rVLv~Ap 263 (2576)
..--+|+||||||||+++.++...+. ..|.+++.+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46789999999999999999999999 88988876543
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.31 E-value=0.017 Score=66.45 Aligned_cols=61 Identities=26% Similarity=0.192 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh------CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~------~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..+++. .-.+|++|+|||||.+....+...+. .+.++|+++||...+.++.+++.++
T Consensus 29 ~~~i~~~~~~----~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 29 AAALPLALEG----KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC----CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 3445555543 35899999999999986655544442 4678999999999999998888765
No 109
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.30 E-value=0.017 Score=70.22 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCC-eEEEEecChHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF-RTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~-rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
....+..++.. .-.+|.+|+|+|||.++..++..++..+. ++|+++||..-+.+..+++.+.
T Consensus 118 Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 118 QKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp HHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 34455555654 23588999999999999888777776654 9999999999999998888754
No 110
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.30 E-value=2.3 Score=52.63 Aligned_cols=182 Identities=8% Similarity=-0.076 Sum_probs=107.9
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCChhHH---HHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcCCH--------
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKDTYWE---GRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKV-------- 1759 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd~~~~---~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G~~-------- 1759 (2576)
.+|..+...|+|++|..+|+++-..... ....+.-+...+. .....+.+++...+.+|.+++...|..
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 3456677899999999999886432110 0001111111111 233456777888888888888876542
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHh---CC---c----hHHHHHHHHHHHcCCHHHHHHHHHHcCCH----------HH--
Q 000053 1760 -DSAAKCFFDMGEYERAGTIYLER---CE---E----PELEKAGECFSLAGCYKLAADVYARGSFL----------AE-- 1816 (2576)
Q Consensus 1760 -~~Aa~~y~kag~~~~A~ely~~~---~~---~----~~~~~aAe~~e~~g~~~eAAelY~kagd~----------~k-- 1816 (2576)
..-+.+|...|++++|.+.+.+. +. . ..+...|..+...|++++|.+.|.++-.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 12345677889999998888764 11 1 13556788889999999999988774221 11
Q ss_pred ---HHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1817 ---CLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1817 ---Ai~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
...++...|.+++|..++++.-...+..... . ...+...+..+...|++..|.+.+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~-----~~~~~~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----L-----QGQWRNIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----G-----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh-----h-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1133667888999999988433222111000 0 0011233455667788888777654
No 111
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.28 E-value=1.6 Score=48.43 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=6.6
Q ss_pred HHHhhcHHHHHHH
Q 000053 1697 LFYEQNYEMATIC 1709 (2576)
Q Consensus 1697 l~~~~~ye~A~k~ 1709 (2576)
++..|+|++|.+.
T Consensus 2 ~~~~g~~~~A~~~ 14 (203)
T 3gw4_A 2 AFEAHDYALAERQ 14 (203)
T ss_dssp -----CHHHHHHH
T ss_pred ccccccHHHHHHH
Confidence 4567888888883
No 112
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.28 E-value=0.023 Score=66.67 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
....-+|+||||||||+++..+...+...+.+++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 366889999999999999999999888888888777654
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.26 E-value=0.061 Score=56.83 Aligned_cols=85 Identities=16% Similarity=0.283 Sum_probs=51.0
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
++.+|+|++|..+|++|=.. +|... ..+...|..|...|++++|+++|. +|+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~---------------------~p~~~-~~~~nlg~~~~~~~~~~~A~~~~~------~al 69 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIEL---------------------DPSNI-TFYNNKAAVYFEEKKFAECVQFCE------KAV 69 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------CTTCH-HHHHHHHHHHHHTTCHHHHHHHHH------HHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---------------------CCCCH-HHHHhHHHHHHHhhhHHHHHHHHH------HHH
Confidence 88899999999999975321 12211 235667788888999999986654 456
Q ss_pred HHHHHhCCc-----hHHHHHHHHHHHcCCHHHHHHHHH
Q 000053 1777 TIYLERCEE-----PELEKAGECFSLAGCYKLAADVYA 1809 (2576)
Q Consensus 1777 ely~~~~~~-----~~~~~aAe~~e~~g~~~eAAelY~ 1809 (2576)
++..+.... ..+...|.++...|+|++|.+.|.
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 665442111 123334444444455444444443
No 114
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.25 E-value=0.066 Score=73.71 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=73.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..+..+|+|++|.++|++|=.. +|+. ...+...|.+|.+.|++++|+++|.+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l---------------------~P~~-~~a~~nLg~~l~~~g~~~eA~~~~~~---- 68 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV---------------------FPEF-AAAHSNLASVLQQQGKLQEALMHYKE---- 68 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------------CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH----
Confidence 455588899999999999976321 1111 11245667777888888888876654
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC----HH----HHHHHHHcCCCHHHHHHHHHh
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF----LA----ECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd----~~----kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
|.++-.+ ....+...|.++.+.|++++|.+.|.++=. .. ..-.+|.+.|.+++|+...++
T Consensus 69 --Al~l~P~--~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 69 --AIRISPT--FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp --HHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444111 124566778888888888888888877422 11 222355667777777777773
No 115
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.24 E-value=0.033 Score=64.21 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
..+.+++-|.+++.. ..+++|.|+.|||||.+.+.-+........ ......++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------------------------~~~~~~~~ 85 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------------------------KASEPGKV 85 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------------------------HTTCCCCE
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------------------------cccCCCcE
Confidence 347899999999953 468999999999999998877643211100 01124689
Q ss_pred EEEEcCHHHHHH-HHHHHHhh
Q 000053 1143 LFVTVSPKLCFA-VKQHISHM 1162 (2576)
Q Consensus 1143 L~vTfS~~la~e-ik~ri~~l 1162 (2576)
|+++.++.++.+ +.+.+.++
T Consensus 86 lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 86 IVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp EEEESSHHHHHHHHHHTHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHH
Confidence 999999999988 66655554
No 116
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.24 E-value=0.066 Score=70.06 Aligned_cols=190 Identities=11% Similarity=-0.050 Sum_probs=93.6
Q ss_pred HHHHhhcH-HHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1696 WLFYEQNY-EMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1696 ~l~~~~~y-e~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
.+...++| ++|.++|++|-... |.. ...+...|..|...|++++|.++|.++-
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~---------------------p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al---- 164 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLE---------------------PEL-VEAWNQLGEVYWKKGDVTSAHTCFSGAL---- 164 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH----
T ss_pred HHHhccccHHHHHHHHHHHHhhC---------------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 37889999 99999999753211 110 1124555666666677777776665421
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHc---------CCHHHHHHHHHHcCC--------HHHHHHHHHcC--------CCHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLA---------GCYKLAADVYARGSF--------LAECLDVCSKG--------KLFDI 1829 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~---------g~~~eAAelY~kagd--------~~kAi~~y~k~--------k~fd~ 1829 (2576)
++. .+...+...|.++... |++++|.+.|.++-. +...-.+|... +.+++
T Consensus 165 --~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 165 --THC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp --TTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred --hhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 110 0112233444455555 666666666555311 11111223333 45666
Q ss_pred HHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHHhCcHHHHHHHHHhcC-CHHHHHHHH
Q 000053 1830 GLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKG-CFDELLVLE 1908 (2576)
Q Consensus 1830 A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~~~~~e~a~~~l~~~~-~~dea~ell 1908 (2576)
|+...++.-+..+.. ......+...+..|...|++..|.+.++..- +...... .+.....++
T Consensus 240 A~~~~~~al~~~p~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 240 ALSAYAQAEKVDRKA-----------SSNPDLHLNRATLHKYEESYGEALEGFSQAA------ALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHCGGG-----------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-----------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHH
Confidence 666665322222100 0011223334556777899988887776421 1111111 123344555
Q ss_pred HhccCHHHHHHHHHHcCCHHHHHHHH
Q 000053 1909 EESESFMDAANIARLRGDILRTVDLL 1934 (2576)
Q Consensus 1909 ~~~g~feeAa~ia~~~G~~~eA~kly 1934 (2576)
...|++++|.+.+.+. +.....+++
T Consensus 303 ~~lg~~~eAi~~~~~~-~~~~l~~~~ 327 (474)
T 4abn_A 303 EFLSRLTSLLESKGKT-KPKKLQSML 327 (474)
T ss_dssp HHHHHHHHHHHHTTTC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-cCccHHHHH
Confidence 6666777777666544 333333444
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.23 E-value=0.041 Score=58.19 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHH
Q 000053 1673 EEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKI 1752 (2576)
Q Consensus 1673 ~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~ 1752 (2576)
+.|+.+|.. ++.+|+|++|.++|++|=.. +|.. ...+...|..
T Consensus 14 ~~~~~~G~~---------------~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~~~~~ 56 (126)
T 4gco_A 14 QEEKNKGNE---------------YFKKGDYPTAMRHYNEAVKR---------------------DPEN-AILYSNRAAC 56 (126)
T ss_dssp HHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHh---------------------CCCC-HHHHHHHhhH
Confidence 467788877 88999999999999975321 1111 1234667788
Q ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1753 FEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1753 fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|...|++++|+++|.+ |.++-. .....+...|.++...|+|++|.+.|.+
T Consensus 57 ~~~~~~~~~A~~~~~~------al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 57 LTKLMEFQRALDDCDT------CIRLDS--KFIKGYIRKAACLVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHTTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHH------HHHhhh--hhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888876653 454411 1123456667777777777777766655
No 118
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.23 E-value=1.2 Score=50.04 Aligned_cols=119 Identities=9% Similarity=-0.104 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHH
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAE 1816 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~k 1816 (2576)
.+...|..|...|++++|.++|.+ +.++.. .....+...|.++...|++++|.++|.++-. +..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~------~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIED------ALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH------HHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 456677778888888888877654 233211 1234567788899999999999999987522 223
Q ss_pred HHHHHHcC-CCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHH
Q 000053 1817 CLDVCSKG-KLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1817 Ai~~y~k~-k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k 1883 (2576)
...+|... +.+++|+.++++.-. .+.. +.. .......+..+.+.|++..|.+.+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~~~----~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA-DPTY----PTP-------YIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT-STTC----SCH-------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc-CcCC----cch-------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566778 999999999885433 1001 000 1122334556777899988887665
No 119
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.21 E-value=0.3 Score=62.83 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcC
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~rag 1714 (2576)
.+|.+...+|+|++|.++|++|-
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl 78 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAE 78 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 35666888999999999999874
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.19 E-value=0.45 Score=55.08 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFD 1768 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~k 1768 (2576)
++..|+|++|..+|+++-... ..++. ....+...|..|.+.|++++|+.+|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~------------------p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY------------------PFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC------------------TTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC------------------CCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 888999999999999643210 00110 112345567778888888888866654
No 121
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.19 E-value=0.41 Score=56.81 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=63.7
Q ss_pred HHHHHH----hhcHHHHHHHHHHcCChhHHHHHHHH-HHHHHHhH--hhcCChHHHHHHHHHHHHHHHHcCCH---HHHH
Q 000053 1694 CLWLFY----EQNYEMATICFEKAKDTYWEGRSKAS-GLKAAADR--ISSSNPLEARIILREAAKIFEAIGKV---DSAA 1763 (2576)
Q Consensus 1694 ~~~l~~----~~~ye~A~k~f~ragd~~~~~l~~A~-~l~~~a~~--l~~~~~~~a~~~~~eAA~~fe~~G~~---~~Aa 1763 (2576)
|..+.. .+++++|.++|+++-..... .++ .+...... -...+.+++...|.+|++. +.. -.-+
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~---~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg 117 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLG 117 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHH
Confidence 344777 89999999999997554211 111 11111100 0134566666666666653 322 2335
Q ss_pred HHHHH----cCCHHHHHHHHHHhC---CchHHHHHHHHHHH----cCCHHHHHHHHHH
Q 000053 1764 KCFFD----MGEYERAGTIYLERC---EEPELEKAGECFSL----AGCYKLAADVYAR 1810 (2576)
Q Consensus 1764 ~~y~k----ag~~~~A~ely~~~~---~~~~~~~aAe~~e~----~g~~~eAAelY~k 1810 (2576)
.+|.. .+++++|.+.|.+.. ....+...|.++.. .+++++|.+.|.+
T Consensus 118 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 175 (273)
T 1ouv_A 118 GIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK 175 (273)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 56666 778888887777642 22345566666666 6677777766665
No 122
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.18 E-value=0.1 Score=60.14 Aligned_cols=122 Identities=11% Similarity=0.014 Sum_probs=64.5
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
..|+.|...|.. ++..|+|++|..+|+++-...-. .++ ..+...
T Consensus 5 ~~~~~~~~~g~~---------------~~~~~~~~~A~~~~~~al~~~~~-----------------~~~----~~~~~~ 48 (228)
T 4i17_A 5 TDPNQLKNEGND---------------ALNAKNYAVAFEKYSEYLKLTNN-----------------QDS----VTAYNC 48 (228)
T ss_dssp CCHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHTTT-----------------CCH----HHHHHH
T ss_pred cCHHHHHHHHHH---------------HHHccCHHHHHHHHHHHHhccCC-----------------CCc----HHHHHH
Confidence 346677777766 88899999999999975432110 011 112224
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC---------------H
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF---------------L 1814 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd---------------~ 1814 (2576)
|..|...|++++|.++|.+ |.++.. .....+...|.++...|++++|.+.|.++-. +
T Consensus 49 ~~~~~~~~~~~~A~~~~~~------al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 49 GVCADNIKKYKEAADYFDI------AIKKNY--NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH------HHHTTC--SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcHHHHHHHHHH------HHHhCc--chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 5555555555555554433 221100 0012344556666666666666666655311 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 000053 1815 AECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1815 ~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
-..-.++.+.+.+++|++..+
T Consensus 121 ~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 121 LKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhHHHHHhccHHHHHHHHH
Confidence 112224445566666666666
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.16 E-value=0.031 Score=69.28 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
....-+|+||||||||+++..+...+...+.+++.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3567899999999999999999888888888888776543
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.13 E-value=0.019 Score=64.42 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhcC--CCCCeEEEEcCCCCChhHHHHHHHHHHHh-------CCCeEEEEe
Q 000053 212 GNLKIIKELLCTD--SGATVQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCT 262 (2576)
Q Consensus 212 ~~~~~i~~vl~~~--~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-------~~~rVLv~A 262 (2576)
+....++.++..- .....-+|+||||||||+++..+...+.. .+..++.+.
T Consensus 26 g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 26 GRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4444555544321 22445599999999999999988888766 366666554
No 125
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.012 Score=72.82 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQ 253 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~ 253 (2576)
++--+|.||||||||.++..++..|-.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556699999999999999998877764
No 126
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.01 E-value=0.059 Score=61.89 Aligned_cols=84 Identities=17% Similarity=0.293 Sum_probs=60.0
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. -.+++-|.+++.. ..+++|.|+.|||||.+.+.-++.. +..
T Consensus 8 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~-----~~~-------- 67 (206)
T 1vec_A 8 YCLKRELLMGIFEM--GW-----EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER-----LDL-------- 67 (206)
T ss_dssp SCCCHHHHHHHHTT--TC-----CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHH-----CCT--------
T ss_pred cCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHH-----hcc--------
Confidence 35677777766542 11 3689999999943 4589999999999998877666421 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 68 --------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 68 --------------KKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp --------------TSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred --------------cCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 012268999999999999998877765
No 127
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.01 E-value=0.36 Score=56.67 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHcCCHHHHHHHHHHhCC----ch----HHHHHHHHHHHcCCHHHHHHH
Q 000053 1737 SNPLEARIILREAAKIFEAIG-KVDSAAKCFFDMGEYERAGTIYLERCE----EP----ELEKAGECFSLAGCYKLAADV 1807 (2576)
Q Consensus 1737 ~~~~~a~~~~~eAA~~fe~~G-~~~~Aa~~y~kag~~~~A~ely~~~~~----~~----~~~~aAe~~e~~g~~~eAAel 1807 (2576)
.+.+++...|.+|.+..-... -+..-+.+|...|++++|.+.+.+... .. .+...|.++...|++++|.+.
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 96 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 345555555555554432222 344445577778888888877776521 11 256777777777777777777
Q ss_pred HHHcCCH--------HHHHHHHHcCCCHHHHHHHHH
Q 000053 1808 YARGSFL--------AECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1808 Y~kagd~--------~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
|.++-.. .....+|.+.+.+++|+..++
T Consensus 97 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 97 YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7775542 123335566777777777776
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.93 E-value=0.025 Score=66.74 Aligned_cols=48 Identities=25% Similarity=0.197 Sum_probs=39.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRV 275 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL 275 (2576)
.++.+|.||||+|||+++..++..++..+.+++.++.... ..++..|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHH
Confidence 6799999999999999999999999999999998886554 34555554
No 129
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.89 E-value=0.033 Score=65.58 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=41.0
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHH-h------CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILL-Q------MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll-~------~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
.-.+|++|+|||||.+....+...+ . .+.++|+++||...+.++.+++.++
T Consensus 63 ~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4589999999999998665444433 2 4789999999999999999888765
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.036 Score=62.11 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHhcC--CCCCeEEEEcCCCCChhHHHHHHHHHHHh-------CCCeEEEEe
Q 000053 211 KGNLKIIKELLCTD--SGATVQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCT 262 (2576)
Q Consensus 211 ~~~~~~i~~vl~~~--~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-------~~~rVLv~A 262 (2576)
.+..+.++.+.... ..+..-+|+||||||||+++..+...+.. .+.+++.+.
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 34555555554422 22455699999999999999998888766 356666554
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.83 E-value=0.023 Score=67.51 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=37.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
.+|.||+|||||.++..++.. .+.++|+++||..-+.+..+++.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~ 154 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLG 154 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHG
T ss_pred EEEEeCCCCCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 899999999999998766554 38899999999988888776665
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.79 E-value=0.022 Score=66.83 Aligned_cols=38 Identities=29% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||||+|||+++..++..+...|.+|+++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 67999999999999999999999999999999999774
No 133
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.77 E-value=0.065 Score=63.49 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=61.3
Q ss_pred hcccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1044 FYSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1044 f~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
-+.+++.+.+.+... +. -.+++-|.+++. ...+++|.|+.|||||.+.+.-++.. +..
T Consensus 33 ~~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~-----l~~------- 93 (245)
T 3dkp_A 33 EYKINSRLLQNILDA--GF-----QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ-----LKQ------- 93 (245)
T ss_dssp HHCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HCS-------
T ss_pred ccCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH-----Hhh-------
Confidence 356777777776542 21 348999999994 34589999999999999876655421 100
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
......++|+++.++.|+.++.+.+.++
T Consensus 94 --------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 94 --------------PANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp --------------CCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------cccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 0112358999999999999998877765
No 134
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.73 E-value=0.071 Score=61.97 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=60.0
Q ss_pred cccCHHHHHhhcccccccccCCCCC-CCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFE-VTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~-Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
+.+++.+.+.+... .|. +++-|.+++.. ..+++|.++.|||||.+.+.-++.. +..
T Consensus 19 ~~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~-----~~~------- 78 (220)
T 1t6n_A 19 FLLKPELLRAIVDC--------GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ-----LEP------- 78 (220)
T ss_dssp SCCCHHHHHHHHHT--------TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----CCC-------
T ss_pred cCCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh-----hhc-------
Confidence 35677777776441 143 89999999943 4589999999999998877766421 100
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 79 ---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 79 ---------------VTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp ---------------CTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ---------------cCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 011258999999999999998877765
No 135
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.69 E-value=0.22 Score=57.20 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=23.8
Q ss_pred ChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCC
Q 000053 1671 SPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1671 s~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
+.+.+..+|.. ++..|+|++|..+|+++-.
T Consensus 3 ~~~~~~~~g~~---------------~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 3 SVDEMLQKVSA---------------AIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp CHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---------------HHHCCCHHHHHHHHHHHHH
Confidence 45566666766 8899999999999998654
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.64 E-value=0.95 Score=50.42 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHH---HHHHHHHHHHHHh-HhhcCChHHHHHHHHHHHHHHHHcC-CH-------H
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWE---GRSKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIG-KV-------D 1760 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~---~l~~A~~l~~~a~-~l~~~~~~~a~~~~~eAA~~fe~~G-~~-------~ 1760 (2576)
+|..+...|+|++|..+|+++-..... ....+.-+...+. .....+.+++...+.+|.+++.+.| .. .
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 455588899999999999986541110 0000111111111 1223455666667777777777666 32 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 000053 1761 SAAKCFFDMGEYERAGTIYLE 1781 (2576)
Q Consensus 1761 ~Aa~~y~kag~~~~A~ely~~ 1781 (2576)
.-+.+|...|++++|.+.+.+
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 224555666777776666554
No 137
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.60 E-value=0.066 Score=62.30 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=60.6
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. .++++-|.+++.. ..+++|.|+.|||||.+...-++.. +..
T Consensus 9 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~-----l~~-------- 68 (219)
T 1q0u_A 9 FPFQPFIIEAIKTL--RF-----YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK-----IKP-------- 68 (219)
T ss_dssp SCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHH-----CCT--------
T ss_pred CCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----HHh--------
Confidence 35677777766431 22 4689999999943 4689999999999999876666421 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.....++|+++.++.++.++.+.+.++.
T Consensus 69 --------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 69 --------------ERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp --------------TSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------------CcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 0123689999999999999988777663
No 138
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.58 E-value=0.87 Score=49.34 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1744 IILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARG 1811 (2576)
Q Consensus 1744 ~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~ka 1811 (2576)
..+...|..+...|++++|.++|.++-.... .....+...|.++...|++++|.++|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------FDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------cChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666777777777777777665432210 11233456677777777777777777663
No 139
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.57 E-value=0.24 Score=68.17 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC----HHHH---
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF----LAEC--- 1817 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd----~~kA--- 1817 (2576)
.+...|.+|.+.|++++|+++|.+ |.++..+ ....+...|.+|.+.|++++|.+.|.++=. +..|
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~k------Al~l~P~--~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRK------ALEVFPE--FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 456778889999999999988754 5555211 224567788888889999999888877421 1112
Q ss_pred -HHHHHcCCCHHHHHHHHH
Q 000053 1818 -LDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1818 -i~~y~k~k~fd~A~~l~r 1835 (2576)
-.+|.+.+.+++|++..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 224455666666666665
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.55 E-value=0.023 Score=61.93 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeE-EEEe
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRT-LVCT 262 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rV-Lv~A 262 (2576)
.+.--+|+||||||||+++..+-......+... +-|+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECC
Confidence 344569999999999999887754443334433 3344
No 141
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.55 E-value=0.035 Score=64.70 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHH-h--CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILL-Q--MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll-~--~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+ . .+.++|+++||...+.++.+++.++.
T Consensus 42 ~~~i~~~~~~----~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 42 QRAIMPIIEG----HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC----CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3445555543 3489999999999988543333333 2 35699999999999999988887653
No 142
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.51 E-value=0.039 Score=68.99 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~--~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..+++. +.-.+|++|+|||||.+....+..++.. +.++|+++||...+.++.+++.++.
T Consensus 34 ~~~i~~~~~~---~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 34 MKVIPLFLND---EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HHHHHHHHHT---CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 3445555543 2468999999999999988777666654 7899999999999999999888764
No 143
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.45 E-value=0.027 Score=65.85 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 230 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
-++.||||+||||+...+...+...|++|+++--
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999999999999999999999876554
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.45 E-value=0.041 Score=60.45 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
.....+|+||||||||+++..+...+...|.+++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 467899999999999999999988877777777666543
No 145
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.44 E-value=0.018 Score=66.59 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.-+.+|.||||||||+.+..++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3488999999999999987765554
No 146
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.38 E-value=0.062 Score=66.53 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=52.2
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
.++-++.++.--...++.+|.||||+|||+.+..++..+...+.+|+.++.- ....++..|+...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 3455666664444588999999999999999999999998888999999876 4556788888765
No 147
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.32 E-value=0.12 Score=60.71 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=59.7
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+...+... +. -.+++-|.+++. ...+++|.|+.|||||.+.+.-++.... .. .
T Consensus 30 ~~l~~~l~~~l~~~--~~-----~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~--~~---~------ 91 (236)
T 2pl3_A 30 FPLSKKTLKGLQEA--QY-----RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALY--RL---Q------ 91 (236)
T ss_dssp SCCCHHHHHHHHHT--TC-----CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHH--HT---T------
T ss_pred cCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHH--hh---c------
Confidence 35667777666432 21 358999999984 3568999999999999986655532110 00 0
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.......++|+++.++.++.++.+.+.++
T Consensus 92 ------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 92 ------------WTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp ------------CCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ------------ccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 00112368999999999999998877765
No 148
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.32 E-value=0.47 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcCC
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
.+|..+...++|++|..+|+++-.
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456678889999999999998654
No 149
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.31 E-value=0.024 Score=69.43 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+..-|++||||||||+++.++...+ +.+++.++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~ 70 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAG 70 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHH
Confidence 5578899999999999998887766 6666666643
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.22 E-value=1.1 Score=54.01 Aligned_cols=19 Identities=11% Similarity=0.032 Sum_probs=15.9
Q ss_pred HHHHHhhcHHHHHHHHHHc
Q 000053 1695 LWLFYEQNYEMATICFEKA 1713 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ra 1713 (2576)
..++..++|++|.++|.++
T Consensus 83 ~~~~~~~~y~~A~~~~~~~ 101 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 3388899999999999864
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.32 Score=61.71 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=34.4
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDM 1769 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~ka 1769 (2576)
+...|+|++|.+.|.++-+.....-. +... . .............+...+.+|.+.|++++|.++|.++
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~-~~~~---~-~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSS-AAAG---A-SVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSS-BSSS---S-SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccch-hHHH---H-HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88899999999999974321000000 0000 0 0000000011123456677777777777777776553
No 152
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.20 E-value=0.085 Score=57.41 Aligned_cols=108 Identities=13% Similarity=0.003 Sum_probs=63.5
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
.....+++++.|+.+|+++-...- +. ...+...|.+|.+.|++++|.++|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p---------------------~~-~~~~~~la~~y~~~~~~~~A~~~~~~------ 56 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR---------------------QK-SIKGFYFAKLYYEAKEYDLAKKYICT------ 56 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH---------------------HH-HTTHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHcChHHHHHHHHHHhcccCc---------------------cc-HHHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence 334568899999999998766421 11 11234556777777777777766543
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC-----HH---HHHHHHHcCCCHHHHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF-----LA---ECLDVCSKGKLFDIGLQ 1832 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd-----~~---kAi~~y~k~k~fd~A~~ 1832 (2576)
|.++-. .....+...|.++...|++++|.+.|.++=. .+ ..-.+|.+.+.+++|++
T Consensus 57 al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 57 YINVQE--RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHhCC--CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 333311 1234567778888888888888888777422 11 22234555666655554
No 153
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.18 E-value=0.12 Score=61.17 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=59.7
Q ss_pred ccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNS 1122 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~ 1122 (2576)
.+++.+...+... +. -.+++-|.+++.. ..+++|.|+.|||||.+.+.-++.. +.....
T Consensus 35 ~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~-----l~~~~~------ 96 (242)
T 3fe2_A 35 NFPANVMDVIARQ--NF-----TEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH-----INHQPF------ 96 (242)
T ss_dssp TCCHHHHHHHHTT--TC-----CSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHH-----HHTSCC------
T ss_pred CCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHH-----HHhccc------
Confidence 4566666666442 11 2489999999843 4689999999999999866655421 111000
Q ss_pred cchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1123 SQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1123 ~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.......++|+++.++.|+.++.+.+.++.
T Consensus 97 -----------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 97 -----------LERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp -----------CCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -----------cccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 001223689999999999999988777653
No 154
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.18 E-value=0.083 Score=61.52 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=58.9
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. -.+++-|.+++. ...+++|.|+.|||||.+...-++.. +..
T Consensus 19 l~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~-----l~~-------- 78 (224)
T 1qde_A 19 MELDENLLRGVFGY--GF-----EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR-----IDT-------- 78 (224)
T ss_dssp GTCCHHHHHHHHHH--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----CCT--------
T ss_pred cCCCHHHHHHHHHC--CC-----CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH-----Hhc--------
Confidence 35667766666432 11 358999999984 34589999999999998865555321 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 79 --------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 79 --------------SVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp --------------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------cCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 012368999999999999998877765
No 155
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.08 E-value=0.033 Score=65.92 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 58 ~~ai~~i~~~----~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 58 QRAIIPCIKG----YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HHHHHHHHTT----CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 3445555543 24799999999999875544444443 46799999999999999988887653
No 156
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.07 E-value=0.05 Score=62.46 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 31 ~~~i~~~~~~----~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 31 EESIPIALSG----RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp HHHHHHHHTT----CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccC----CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 3445555533 35899999999999766544444332 25689999999999999988887653
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.05 E-value=0.076 Score=65.13 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCC----eEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKF----RTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~----rVLv~ApT 264 (2576)
..--||+||||||||+++..+...+...+. .++.+.++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 446799999999999999988887766543 66666654
No 158
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.01 E-value=0.1 Score=61.81 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
..+.+++.|.+++.. .+..+|.|++|+|||.+++.-+.. . ..++
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------~---------------------------~~~~ 136 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE------L---------------------------STPT 136 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH------S---------------------------CSCE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH------c---------------------------CCCE
Confidence 457899999999942 346999999999999998765521 0 1589
Q ss_pred EEEEcCHHHHHHHHHHHHh
Q 000053 1143 LFVTVSPKLCFAVKQHISH 1161 (2576)
Q Consensus 1143 L~vTfS~~la~eik~ri~~ 1161 (2576)
|+++.++.++.++.+.+.+
T Consensus 137 liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 137 LIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp EEEESSHHHHHHHHHHHGG
T ss_pred EEEeCCHHHHHHHHHHHHh
Confidence 9999999999888876665
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.00 E-value=0.036 Score=71.20 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.+-+|.||||+|||||+..|...|...|++|++++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999999999999997766
No 160
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.99 E-value=0.055 Score=62.94 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..+++. .-.+|++|+|||||.+....+...+.. +.++|+++||..-+.++.+++.++.
T Consensus 42 ~~~i~~~~~~----~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 42 HECIPQAILG----MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3445555543 238999999999998776655555443 4589999999999999988887653
No 161
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.96 E-value=0.038 Score=72.13 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCCChhHH-HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTkt-Is~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
.+...+|.||+|||||.+ +..++..++..+.++|+++||...+.++.+++.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 367899999999999998 567777777889999999999998888877663
No 162
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.93 E-value=0.1 Score=62.33 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=59.7
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. ..+++-|.+++. ...+++|.|+.|||||.+...-++.. +..
T Consensus 48 l~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~-----l~~-------- 107 (249)
T 3ber_A 48 LGVTDVLCEACDQL--GW-----TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA-----LLE-------- 107 (249)
T ss_dssp GTCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHH--------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHH-----Hhc--------
Confidence 45677777666432 11 368999999984 34689999999999999876655321 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.|+.++.+.+.++
T Consensus 108 --------------~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 108 --------------TPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp --------------SCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------CCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 011258999999999999998877765
No 163
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.91 E-value=0.093 Score=61.96 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHH-HHhCCC----eEEEEecChHHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVI-LLQMKF----RTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~-Ll~~~~----rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
+...+|.||.|||||+++...+.. +...+. ++++.+||.....++++++.+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 568999999999999888765554 344443 8999999999999998887643
No 164
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.89 E-value=0.071 Score=62.38 Aligned_cols=61 Identities=25% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---------CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---------MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---------~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..+++. .-.+|.+|.|||||.+....+...+. .+.++|+++||..-+.++.+++.++
T Consensus 48 ~~~i~~~~~~----~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 48 SQAWPIILQG----IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 3445555533 23599999999999886544433332 5788999999999999998888765
No 165
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.88 E-value=0.053 Score=66.37 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.--+|+||||||||+++..+...+ +.+++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4567899999999999998887665 555555543
No 166
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.86 E-value=0.35 Score=53.04 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=57.7
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
++..|+|++|..+|+++-.. +|... ..+...|..|...|++++|+++|.+ |.
T Consensus 46 ~~~~g~~~eA~~~~~~al~~---------------------~P~~~-~~~~~lg~~~~~~g~~~~Ai~~~~~------al 97 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIY---------------------DFYNV-DYIMGLAAIYQIKEQFQQAADLYAV------AF 97 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred HHHcCCHHHHHHHHHHHHHh---------------------CCCCH-HHHHHHHHHHHHHccHHHHHHHHHH------HH
Confidence 88899999999999965321 12111 1346667888888888888877764 44
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
++-. .....+...|.+|...|++++|.+.|.+
T Consensus 98 ~l~P--~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 98 ALGK--NDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHSS--SCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4421 1235567778888888888888877765
No 167
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.85 E-value=0.062 Score=64.67 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHH-HHHHHh------CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSML-LVILLQ------MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~L-l~~Ll~------~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|+||.|||||.+.... +..+.. .+.++|+++||..-+.++.+++.++.
T Consensus 82 ~~~i~~~~~~----~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 82 HKSIRPLLEG----RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp HHHHHHHHHT----CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4445555553 23699999999999886544 334443 57899999999999999998888764
No 168
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.83 E-value=0.073 Score=63.04 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh----CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ----MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~----~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 57 ~~~i~~~~~~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 57 MQAIPVMLHG----RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3444444543 23799999999999986544444443 46689999999999999998887663
No 169
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.82 E-value=0.047 Score=70.65 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=40.6
Q ss_pred CCeEEEEcCCCCChhHHH-HHHHHHHHhCCCeEEEEecChHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTIVAIKELASRV 275 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktI-s~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL 275 (2576)
+...+|+||+|||||.+. ..++..++..|.++++++||..-+.++.+.+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHh
Confidence 357899999999999996 5566577788999999999999888766544
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.79 E-value=0.09 Score=65.06 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHH
Q 000053 217 IKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 217 i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
++..+.....+.+-|+.||||||||+++..+...+ +..++-+.+++.-++.+.+.+..
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~~i~~~~~~ 95 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKIDFVRGPLTN 95 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHHHHHTHHHH
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHHHHHHHHHH
Confidence 44445555567788999999999999998876554 67777777766555555444433
No 171
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.77 E-value=0.083 Score=62.39 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=59.4
Q ss_pred cccCHHHHHhhcccccccccCCCC-CCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPF-EVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f-~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
+.+++.+.+.+... + | .+++-|.+++.. ..+++|.|+.|||||.+.+.-++.. +..
T Consensus 35 l~l~~~l~~~l~~~--g------~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~-----l~~------- 94 (237)
T 3bor_A 35 MNLKESLLRGIYAY--G------FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ-----LEI------- 94 (237)
T ss_dssp SCCCHHHHHHHHHH--T------CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHH-----CCT-------
T ss_pred cCCCHHHHHHHHHC--C------CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH-----HHh-------
Confidence 35677777766431 1 3 389999999843 4589999999999998866655421 100
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 95 ---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 95 ---------------EFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ---------------cCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 012368999999999999998877765
No 172
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.77 E-value=0.052 Score=65.23 Aligned_cols=39 Identities=23% Similarity=0.103 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
.+.--+|+||||||||+++..+...+-..+.+.+.+..+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 355779999999999998887766554445555554433
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.75 E-value=0.097 Score=67.92 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=36.4
Q ss_pred HHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHH
Q 000053 219 ELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 219 ~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
..+..... +.-|||||||||||+++..+...+ +.....+...+..+..+...+..
T Consensus 43 ~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~ir~~~~~ 97 (447)
T 3pvs_A 43 RAIEAGHL-HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEIREAIER 97 (447)
T ss_dssp HHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHHHHHHHHH
T ss_pred HHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHHHHHHHHH
Confidence 33444333 457999999999999988776543 66666666666666655544433
No 174
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.74 E-value=2.1 Score=54.84 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=13.2
Q ss_pred HHHHHhhcHHHHHHHHHHc
Q 000053 1695 LWLFYEQNYEMATICFEKA 1713 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ra 1713 (2576)
..+...|+|++|..+|+++
T Consensus 102 ~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHH
Confidence 3366677777777777765
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.72 E-value=0.042 Score=65.62 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.--||+||||||||+++..+...+ +.+++.+..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 4457999999999999998876644 5555555543
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.69 E-value=0.054 Score=63.06 Aligned_cols=36 Identities=25% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh
Q 000053 218 KELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ 253 (2576)
Q Consensus 218 ~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~ 253 (2576)
...+.....+.+-+|.||||||||+++..+...+..
T Consensus 36 ~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 36 ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334445544568899999999999999888665543
No 177
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.69 E-value=0.042 Score=70.64 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.+-+|.||||+|||||+..|...|...|++|++++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 678899999999999999999999999999997755
No 178
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.67 E-value=0.043 Score=71.45 Aligned_cols=49 Identities=29% Similarity=0.423 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCCChhHH-HHHHHHHHHhCCCeEEEEecChHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKT-VSMLLVILLQMKFRTLVCTPTIVAIKELASRV 275 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTkt-Is~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL 275 (2576)
+++.+|.||+|||||.. +..++..++..+.++|+++||..-+.++.+++
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHh
Confidence 67899999999999995 77777778888999999999999888777655
No 179
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.65 E-value=0.05 Score=63.37 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 32 ~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 32 ERIIPGALRG----ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp HHHHHHHHHT----CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 4445555543 34689999999999876554444443 36799999999999999999888765
No 180
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.64 E-value=0.35 Score=63.17 Aligned_cols=85 Identities=12% Similarity=-0.034 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC-------HHH
Q 000053 1745 ILREAAKIFEAIGKV-DSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF-------LAE 1816 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~-~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd-------~~k 1816 (2576)
.+...|..|...|++ ++|.++|.+ |.++.. .....+...|.+|...|++++|.++|.++-. +..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~------al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 175 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSK------AVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQN 175 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHH------HHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 456667777777888 888776654 333311 1234677889999999999999999988522 112
Q ss_pred HHHHHHcC---------CCHHHHHHHHHhh
Q 000053 1817 CLDVCSKG---------KLFDIGLQYISYW 1837 (2576)
Q Consensus 1817 Ai~~y~k~---------k~fd~A~~l~r~~ 1837 (2576)
.-.+|.+. +.+++|++.+++.
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 22345556 7888888888843
No 181
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.59 E-value=0.12 Score=60.58 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=58.4
Q ss_pred ccCHHHHHhhcccccccccCCCC-CCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPF-EVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f-~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
.+++.+...+... .| .+++-|.+++.. ..+++|.++.|||||.+...-++.. +..
T Consensus 30 ~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~-----l~~-------- 88 (230)
T 2oxc_A 30 LLSRPVLEGLRAA--------GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS-----LVL-------- 88 (230)
T ss_dssp TCCHHHHHHHHHT--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----CCT--------
T ss_pred CCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH-----HHh--------
Confidence 4667666666331 14 389999999943 4589999999999999866555321 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 89 --------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 89 --------------ENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp --------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------cCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 012368999999999999998877765
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=93.57 E-value=0.2 Score=55.57 Aligned_cols=108 Identities=11% Similarity=-0.000 Sum_probs=64.6
Q ss_pred ChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHH-HHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1671 SPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGR-SKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1671 s~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l-~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
....|...|.. ++..|+|++|..+|.+|=...-... +.+.. ..|.. ...|...
T Consensus 10 ~a~~~~~~G~~---------------l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~----------~~~~~-a~a~~n~ 63 (159)
T 2hr2_A 10 GAYLALSDAQR---------------QLVAGEYDEAAANCRRAMEISHTMPPEEAFD----------HAGFD-AFCHAGL 63 (159)
T ss_dssp HHHHHHHHHHH---------------HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC----------HHHHH-HHHHHHH
T ss_pred HHHHHHHHHHH---------------HHHCCCHHHHHHHHHHHHhhCCCCcchhhhh----------hccch-HHHHHHH
Confidence 34567788877 9999999999999998543211000 00000 00101 1257788
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhC--C---chHH----HHHHHHHHHcCCHHHHHHHHHH
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERC--E---EPEL----EKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~--~---~~~~----~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|..+.+.|+|++|+.||.+ |.+++-... + ...| ..-|.++...|.|++|.+.|.+
T Consensus 64 g~al~~Lgr~~eAl~~~~k------AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 64 AEALAGLRSFDEALHSADK------ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHH------HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH------HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999988754 454432221 1 1234 5566666666666666666543
No 183
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.55 E-value=0.075 Score=70.11 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=49.5
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCC-eEEEEecChHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF-RTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~-rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
....++.++.. .-.+|+||+|+|||.+...++..++..+. ++|+++||..-+.+..+++.+.
T Consensus 118 Q~~ai~~~~~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 118 QKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp HHHHHHHHHHH----SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 34556666654 34799999999999999888777776655 9999999999999998888543
No 184
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.54 E-value=2.3 Score=51.70 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=21.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhC-----Cch-HHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1763 AKCFFDMGEYERAGTIYLERC-----EEP-ELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1763 a~~y~kag~~~~A~ely~~~~-----~~~-~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+.++.+.|++++|.++|.+.. +.. .+...|.++.+.|.+++|..+|.+
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334444444444444444431 112 344455555555555555555444
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.52 E-value=0.11 Score=65.46 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=25.5
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhC
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQM 254 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~ 254 (2576)
..+...+|+||||||||+++..+...+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 446789999999999999999988877654
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.47 E-value=0.048 Score=68.40 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=42.4
Q ss_pred HHHHHHHHh--cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHH
Q 000053 214 LKIIKELLC--TDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVA 267 (2576)
Q Consensus 214 ~~~i~~vl~--~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~A 267 (2576)
..-++.+|. --...++.+|.||||+|||+++..++..+...+.+|+.++.-+..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 345566665 223377999999999999999999999998889999888775543
No 187
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.46 E-value=0.11 Score=65.59 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..++.. .+.-.+|++|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++
T Consensus 33 ~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 33 ERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp HHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 4455555554 2356899999999999987766555543 4679999999999999999988765
No 188
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.45 E-value=0.064 Score=61.47 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||+|+|||+.+..++..+...|.+|++..|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45999999999999999999999999999999999887
No 189
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.19 Score=52.17 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=51.9
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
++..|+|++|..+|+++-.. +|.. ...+...|..|...|++++|..+|.+ |.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~---------------------~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~------al 65 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKR---------------------APED-ARGYSNRAAALAKLMSFPEAIADCNK------AI 65 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred HHHhcCHHHHHHHHHHHHHh---------------------CCCC-hHHHHHHHHHHHHhcCHHHHHHHHHH------HH
Confidence 88899999999999975321 1111 12356667778888888888866654 44
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
++... ....+...|.++...|++++|.+.|.+
T Consensus 66 ~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 66 EKDPN--FVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCC--cHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 43111 123455566666666666666655544
No 190
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.41 E-value=0.13 Score=61.45 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHH-HHHhC--CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLV-ILLQM--KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~-~Ll~~--~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+. .+... +.++|+++||...+.++.+++.++.
T Consensus 71 ~~~i~~i~~~----~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 71 IEAIPLALQG----RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3445555533 4589999999999988654443 44443 4579999999999999999887664
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.39 E-value=0.074 Score=61.97 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRV 275 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL 275 (2576)
...+.+|.||||+|||+++..++..+...+.+|++.+.... ..++..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHH
Confidence 46799999999999999999999888888888888876443 33444443
No 192
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.39 E-value=0.39 Score=54.32 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=47.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
.|..++..|+|++|..+|+++-+... ..+...|..|...|++++|.++|.+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~-------------------------~~~~~lg~~~~~~g~~~~A~~~~~~---- 62 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHS-------------------------RICFNIGCMYTILKNMTEAEKAFTR---- 62 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCH-------------------------HHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCCh-------------------------HHHHHHHHHHHHcCCHHHHHHHHHH----
Confidence 45568889999999999999854311 1234444555555555555544432
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.++...|+|++|.+.|.+
T Consensus 63 --al~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 63 --SINRDK--HLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp --HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHhCc--cchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 222210 0122344555566666666666666555
No 193
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=93.38 E-value=0.17 Score=59.95 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHH-HHHHHh-------CCCeEEEEecChHHHHHHHHHHHHHHHh
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSML-LVILLQ-------MKFRTLVCTPTIVAIKELASRVVKLVKE 281 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~L-l~~Ll~-------~~~rVLv~ApTN~AVd~V~~RL~~lv~e 281 (2576)
...+..+++. .-.+|.+|+|||||.+.... +..+.. .+.++|+++||..-+.++.+.+.++...
T Consensus 57 ~~~i~~~~~g----~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 128 (242)
T 3fe2_A 57 AQGWPVALSG----LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA 128 (242)
T ss_dssp HHHHHHHHHT----CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 3445555533 35799999999999886544 444442 3678999999999999999988877544
No 194
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.37 E-value=0.42 Score=58.21 Aligned_cols=135 Identities=10% Similarity=-0.090 Sum_probs=70.7
Q ss_pred HHHhhcHHHHHHHHHHcCChh---HH-HHHHHHH-HHHHHhHhhcCChHHHHHHHHHHHHHHHHcCC-H-HHHHHHHHHc
Q 000053 1697 LFYEQNYEMATICFEKAKDTY---WE-GRSKASG-LKAAADRISSSNPLEARIILREAAKIFEAIGK-V-DSAAKCFFDM 1769 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~---~~-~l~~A~~-l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~-~-~~Aa~~y~ka 1769 (2576)
+...|++++|..+|+++=... .. .+..... +.. ..+.+++...|.+|.+.--.... + ..|...+...
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR------AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH------HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH------hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 778999999999999964311 11 1111100 111 11233344444444321000000 0 1111112224
Q ss_pred CCHHHHHHHHHHh-----CCchHHHHHHHHHHHcCCHHHHHHHHHHcC-----C-------HHHHHHHHHcCCCHHHHHH
Q 000053 1770 GEYERAGTIYLER-----CEEPELEKAGECFSLAGCYKLAADVYARGS-----F-------LAECLDVCSKGKLFDIGLQ 1832 (2576)
Q Consensus 1770 g~~~~A~ely~~~-----~~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d-------~~kAi~~y~k~k~fd~A~~ 1832 (2576)
|++++|..+|.+. .....+...|.++.+.|++++|..+|.++- . |..-+.++.+.|.++.|..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666665543 123567888888888999999999998842 1 2223444455667777777
Q ss_pred HHHhh
Q 000053 1833 YISYW 1837 (2576)
Q Consensus 1833 l~r~~ 1837 (2576)
+.++.
T Consensus 263 ~~~~a 267 (308)
T 2ond_A 263 VEKRR 267 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 195
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.37 E-value=0.097 Score=63.41 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.--||+||||||||+++..+...+ +..++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 5568999999999999998775443 566655544
No 196
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.33 E-value=0.1 Score=66.93 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=51.6
Q ss_pred CCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1067 PFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
++++++-|.+++. ...+++|.|+.|||||.+.+.-++.. . ....++|
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-----~-------------------------~~~~~~l 68 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-----A-------------------------RKGKKSA 68 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-----H-------------------------TTTCCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-----h-------------------------cCCCEEE
Confidence 4789999999994 34589999999999999665544311 0 1126899
Q ss_pred EEEcCHHHHHHHHHHHHhh
Q 000053 1144 FVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l 1162 (2576)
+++.++.|+.++.+++.++
T Consensus 69 il~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 69 LVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHH
Confidence 9999999999999888775
No 197
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.31 E-value=0.1 Score=66.89 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=43.3
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
.-.+|.+|+|||||.+....+..++..+.++|+++||..-+.++.+++.++
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 357999999999999665555556678999999999999999999998865
No 198
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.31 E-value=0.2 Score=63.75 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=61.2
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC-----CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhcccccc
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF-----PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGV 1119 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~-----~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~ 1119 (2576)
+.+++.+...+... +. -.+++-|.+++.. +.+++|.|+.|||||.+.+.-++.. +..
T Consensus 30 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~-----~~~------ 91 (412)
T 3fht_A 30 LRLKPQLLQGVYAM--GF-----NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-----VEP------ 91 (412)
T ss_dssp GTCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHH-----CCT------
T ss_pred CCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHH-----hhh------
Confidence 46677777776542 21 3689999999932 3689999999999999976666421 110
Q ss_pred CCCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1120 NNSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.....++|+++.++.|+.++.+.+.++.
T Consensus 92 ----------------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 92 ----------------ANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------cCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 1123589999999999999988887763
No 199
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.31 E-value=0.045 Score=66.98 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHh----cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC--CCeEEEEecChHH
Q 000053 214 LKIIKELLC----TDSGATVQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTIVA 267 (2576)
Q Consensus 214 ~~~i~~vl~----~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~--~~rVLv~ApTN~A 267 (2576)
..-++.+|. -.--..+++|.||||||||++...++..+.+. +.+++.+..-+..
T Consensus 11 i~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 11 IPMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp CHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 345566666 22224489999999999999999999998886 7888887765543
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.30 E-value=0.12 Score=65.25 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhC--------CCeEEEEec
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQM--------KFRTLVCTP 263 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~--------~~rVLv~Ap 263 (2576)
.+..-+|+||||||||+++..+...+... +..++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 35689999999999999999888877655 667666553
No 201
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.27 E-value=6 Score=41.27 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1743 RIILREAAKIFEAIGKVDSAAKCFFD 1768 (2576)
Q Consensus 1743 ~~~~~eAA~~fe~~G~~~~Aa~~y~k 1768 (2576)
...+...|..|...|++++|.++|.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 34 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQ 34 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34567777788888888888866654
No 202
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.27 E-value=0.11 Score=61.25 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=50.1
Q ss_pred CCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1067 PFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
++.+++.|.+++.. ...++|.|+.||||||++..-++.. .... ......+++
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~-----~~~~--------------------~~~~~~~~l 113 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD-----FIQN--------------------DRAAECNIV 113 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHH-----HHHT--------------------TCGGGCEEE
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcc-----hhhc--------------------CCCCceEEE
Confidence 35678899999843 4578999999999999776554321 0000 011235889
Q ss_pred EEEcCHHHHHHHHHHHHhh
Q 000053 1144 FVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l 1162 (2576)
++..++.++.++.+++...
T Consensus 114 ~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 114 VTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp EEESSHHHHHHHHHHHHHT
T ss_pred EeccchHHHHHHHHHHHHH
Confidence 9999999999998877654
No 203
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.27 E-value=0.2 Score=61.54 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=60.4
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---C--CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhcccccc
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---F--PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGV 1119 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~--~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~ 1119 (2576)
+.+++.++..+... +. -.+|+-|.++|. . +.++++.|+.|||||.+.+.-++.. +..
T Consensus 97 l~l~~~l~~~l~~~--g~-----~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~-----l~~------ 158 (300)
T 3fmo_B 97 LRLKPQLLQGVYAM--GF-----NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ-----VEP------ 158 (300)
T ss_dssp GTCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH-----CCT------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh-----hhc------
Confidence 35677777776542 22 458999999983 2 2589999999999999866555321 110
Q ss_pred CCCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1120 NNSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.....+.|+++.|+.||.++.+.+..+.
T Consensus 159 ----------------~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 159 ----------------ANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------cCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 1123589999999999999988887764
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.26 E-value=0.11 Score=67.55 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhC--CCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~--~~rVLv~ApTN 265 (2576)
...-+|+||||||||+++..+...+... +.+++.+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5678999999999999999888877765 77777765543
No 205
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.24 E-value=0.096 Score=65.35 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=60.4
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---C-CCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---P-RSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~-~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
+.+++.+...+... +. ..+++-|.+++.. . .+++|.|+.|||||.+.+.-++.. +.
T Consensus 11 ~~l~~~~~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~-----~~-------- 70 (367)
T 1hv8_A 11 LNLSDNILNAIRNK--GF-----EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL-----VN-------- 70 (367)
T ss_dssp SSCCHHHHHHHHHH--TC-----CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH-----SC--------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH-----hc--------
Confidence 34667666665432 11 3689999999943 3 588999999999999987766421 10
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.....++|+++.++.++.++.+.+.++.
T Consensus 71 ---------------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 71 ---------------ENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp ---------------SSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 0123689999999999999988877663
No 206
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.21 E-value=0.12 Score=65.50 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 49 ~~~i~~i~~~----~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 49 EEAIPVAITG----RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp HHHHHHHHHT----CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC----CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh
Confidence 4455555543 23899999999999877655555544 46699999999999999998887653
No 207
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.19 E-value=0.15 Score=62.82 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC---CCeEEEEecC--hHHHHHHHHHHHHHHHhhhhhccccc
Q 000053 216 IIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPT--IVAIKELASRVVKLVKESVERDCRDA 290 (2576)
Q Consensus 216 ~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---~~rVLv~ApT--N~AVd~V~~RL~~lv~es~~~~~~~~ 290 (2576)
.++..+..+. .+.-|++||||||||+++..+....... ...++...+. +.-++++.+ +.+.... .
T Consensus 8 ~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~--------~ 77 (305)
T 2gno_A 8 TLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNY--------S 77 (305)
T ss_dssp HHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTS--------C
T ss_pred HHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhh--------c
Confidence 3444555555 6789999999999999998887653211 3356666665 577777655 3332211 1
Q ss_pred cccccccEEEccCcccc
Q 000053 291 LFFPLGEILLLGNNERL 307 (2576)
Q Consensus 291 ~~~~lgdillfGn~~rm 307 (2576)
...+-..++.+.+-.+|
T Consensus 78 p~~~~~kvviIdead~l 94 (305)
T 2gno_A 78 PELYTRKYVIVHDCERM 94 (305)
T ss_dssp CSSSSSEEEEETTGGGB
T ss_pred cccCCceEEEeccHHHh
Confidence 22233467777766666
No 208
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.18 E-value=0.063 Score=69.66 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=41.7
Q ss_pred CCeEEEEcCCCCChhHHH-HHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktI-s~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
+.-.+|+||+|||||.+. ..++..+...+.++|+++||..-+.++.+++.
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh
Confidence 567899999999999996 45666677788899999999998888876654
No 209
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.17 E-value=2.2 Score=51.26 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=18.0
Q ss_pred HHHHHHhhcHHHHHHHHHHcCC
Q 000053 1694 CLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
+..++.+++|++|.++|+++-.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHhc
Confidence 4457889999999999998654
No 210
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.14 E-value=0.13 Score=64.06 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC
Q 000053 217 IKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM 254 (2576)
Q Consensus 217 i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~ 254 (2576)
+...+..+..+..-|++||||||||+++..+...|...
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 34445556667789999999999999999998888754
No 211
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.11 E-value=0.12 Score=61.49 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC------------CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM------------KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~------------~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+.. +.++|+++||..-+.++.+++.++.
T Consensus 51 ~~~i~~i~~~----~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 51 KNAIPAILEH----RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3445555543 347999999999998866555544432 3589999999999999999887664
No 212
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.11 E-value=0.077 Score=60.94 Aligned_cols=27 Identities=44% Similarity=0.517 Sum_probs=23.0
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCC
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMK 255 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~ 255 (2576)
.-+|+||||||||+++..+...+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 389999999999999998888776553
No 213
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.11 E-value=0.12 Score=62.01 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred cCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCc
Q 000053 1047 LSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSS 1123 (2576)
Q Consensus 1047 ~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~ 1123 (2576)
+++.++..+... +. -.+++-|.+++.. ..+++|.|+.|||||.+.+.-++........
T Consensus 61 l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~------------ 121 (262)
T 3ly5_A 61 VNENTLKAIKEM--GF-----TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF------------ 121 (262)
T ss_dssp CCHHHHHHHHHT--TC-----CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC------------
T ss_pred cCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc------------
Confidence 556666665431 21 3489999999942 4689999999999999877666432111000
Q ss_pred chhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1124 QETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
......++|+++.++.||.++.+.+.++
T Consensus 122 -----------~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 122 -----------MPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp -----------CGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -----------cccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 0112368999999999999998877765
No 214
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.10 E-value=0.17 Score=64.22 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=60.7
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+.+.+... +. -.+++-|++++.. ..+++|.|+.|||||.+.+.-++.. +..
T Consensus 26 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~-----~~~-------- 85 (400)
T 1s2m_A 26 FYLKRELLMGIFEA--GF-----EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK-----VKP-------- 85 (400)
T ss_dssp GCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHH-----CCT--------
T ss_pred cCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHH-----Hhh--------
Confidence 35677777777542 11 2499999999953 4689999999999999877766421 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 86 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 86 --------------KLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp --------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------ccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 012358999999999999998877765
No 215
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.10 E-value=0.032 Score=60.71 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLL 248 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll 248 (2576)
+.--+|+||||||||+++..+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4457899999999998876653
No 216
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.09 E-value=0.1 Score=64.26 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..+++. .-.+|.+|+|+|||.+....+ +..+.++|+++||..-+.++.+++.++
T Consensus 22 ~~~i~~i~~~----~~~lv~~~TGsGKT~~~~~~~---~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 22 SKTIPLMLQG----KNVVVRAKTGSGKTAAYAIPI---LELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSSHHHHHHHHH---HHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----CCEEEEcCCCCcHHHHHHHHH---HhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4455555542 358999999999997765443 345899999999999999999988765
No 217
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.07 E-value=0.19 Score=63.38 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=60.8
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---C--CCEEEEecCCccHHHHHHHHHHHHHHhhhhhhcccccc
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---P--RSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGV 1119 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~--~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~ 1119 (2576)
+.+++.+.+.+... +. ..+++-|.+++.. . .+++|.|+.|||||.+.+.-++.. +..
T Consensus 10 ~~l~~~l~~~l~~~--~~-----~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~-----~~~------ 71 (395)
T 3pey_A 10 LGLAPELLKGIYAM--KF-----QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTR-----VNP------ 71 (395)
T ss_dssp SCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHH-----CCT------
T ss_pred CCCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH-----hcc------
Confidence 34667777777542 11 4689999999932 2 689999999999999887766421 100
Q ss_pred CCCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1120 NNSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.|+.++.+.+.++
T Consensus 72 ----------------~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 72 ----------------EDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp ----------------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ----------------CCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 112368999999999999998877765
No 218
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.01 E-value=0.18 Score=59.93 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=52.0
Q ss_pred CCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEE
Q 000053 1068 FEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLF 1144 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~ 1144 (2576)
..+++-|.+++. ...+++|.|+.|||||.+.+.-++.. +...+... .........++|+
T Consensus 44 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~-----l~~~~~~~-------------~~~~~~~~~~~li 105 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH-----LVCQDLNQ-------------QRYSKTAYPKCLI 105 (253)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----HHTTCC-------------------CCBCCSEEE
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----HHhhcccc-------------ccccccCCceEEE
Confidence 358999999994 34589999999999999877666422 11110000 0000122368999
Q ss_pred EEcCHHHHHHHHHHHHhh
Q 000053 1145 VTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1145 vTfS~~la~eik~ri~~l 1162 (2576)
++.++.|+.++.+.+.++
T Consensus 106 l~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 106 LAPTRELAIQILSESQKF 123 (253)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHH
Confidence 999999999998877765
No 219
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.94 E-value=0.17 Score=69.74 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=42.8
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHH
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLV-ILLQMKFRTLVCTPTIVAIKELASRV 275 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~-~Ll~~~~rVLv~ApTN~AVd~V~~RL 275 (2576)
..+...+|.||+|+|||.++...+. .+...+.++++++||...+.+++.++
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~ 95 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF 95 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH
Confidence 3467899999999999999965544 44557999999999999999988887
No 220
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.89 E-value=0.16 Score=63.28 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=53.1
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
.++-++.++.-.....+.+|-||||+|||+.+..++..+...|.+|++++.--. ..+++.|+....
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rlls~~ 97 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRALSDL 97 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHHHHHh
Confidence 355566666544447899999999999999999999999999999999998654 457888887654
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.73 E-value=0.058 Score=66.18 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
..-+++||||||||+++..+...+...+..++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 46899999999999999988877766665555543
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.65 E-value=0.092 Score=66.04 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=40.4
Q ss_pred HHHHHHHh--cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 215 KIIKELLC--TDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 215 ~~i~~vl~--~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
.-++.+|. --....+.+|.||||+|||+++..++..+...+.+++.++.-+
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34555553 1223779999999999999999999999999999998888744
No 223
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.65 E-value=0.17 Score=65.90 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=51.0
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
.+..++.++.--....+.+|.||||+|||+.+..++..+.. .|.+|++.+.-..+ .++..|+..
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~ 253 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLC 253 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHH
Confidence 35567777754555889999999999999999999998886 58899999976544 577777764
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.077 Score=68.10 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
+.=-|+.||||||||.++.++...+ +..++.++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~ 241 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSE 241 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecch
Confidence 3447999999999999998876544 67777776643
No 225
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.58 E-value=0.073 Score=62.85 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll-~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
.++.+|.||||+|||+.+..++...+ ..+.+++.++.... ..++..|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHH
Confidence 67999999999999999999887654 55888998887654 345555554
No 226
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.58 E-value=0.15 Score=66.00 Aligned_cols=60 Identities=27% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..++.. -.+|.+|+|+|||.++..++..++. .+.++|+++||..-+.+..+++.+.
T Consensus 15 ~~~i~~~~~~-----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 15 EVIYAKCKET-----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HHHHHHGGGS-----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3445555543 5789999999999999888777664 6889999999999999999888765
No 227
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.55 E-value=0.071 Score=66.63 Aligned_cols=26 Identities=42% Similarity=0.692 Sum_probs=22.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHhCC
Q 000053 230 QLIWGPPGTGKTKTVSMLLVILLQMK 255 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~Ll~~~ 255 (2576)
-+++||||||||+++..+...+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999998888776543
No 228
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.49 E-value=0.16 Score=64.79 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++... -.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.++.
T Consensus 68 ~~~i~~~~~~~----~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 68 QRAILPCIKGY----DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp HHHHHHHHTTC----CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred HHHhHHHhCCC----CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh
Confidence 44555555532 3799999999999887655555443 47799999999999999998887653
No 229
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.45 E-value=0.21 Score=61.05 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHH
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
..++.+........+.+|-||||+|||+++..++..+... |.+|++.+.... ..++..|+...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~~ 86 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGL 86 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHHH
Confidence 3455565555567899999999999999999988887766 778988876543 23455555433
No 230
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=92.43 E-value=0.18 Score=62.17 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=49.8
Q ss_pred CCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEE
Q 000053 1069 EVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFV 1145 (2576)
Q Consensus 1069 ~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~v 1145 (2576)
.+++-|++++.. ..+++|.|+.|||||.+...-++. ...++|++
T Consensus 16 ~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---------------------------------~~~~~liv 62 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---------------------------------LGMKSLVV 62 (337)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---------------------------------HTCCEEEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---------------------------------hcCCEEEE
Confidence 589999999953 468999999999999887665531 02689999
Q ss_pred EcCHHHHHHHHHHHHhh
Q 000053 1146 TVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1146 TfS~~la~eik~ri~~l 1162 (2576)
+.++.++.++.+.+.++
T Consensus 63 ~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 63 TPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHH
Confidence 99999999998877765
No 231
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.37 E-value=0.12 Score=71.80 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=40.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHH-hC--CCeEEEEecChHHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILL-QM--KFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll-~~--~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
+.+.+|.||+|+|||+.+..++.... .. +.++++++||..++.+++.++.+.
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 46899999999999996665533322 12 678999999999999999887643
No 232
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.37 E-value=0.099 Score=65.62 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=40.4
Q ss_pred HHHHHHHh--cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 215 KIIKELLC--TDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 215 ~~i~~vl~--~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
.-++.+|. --...++.+|.||||||||+++..++..+...+.+++..+.-.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34555555 2234789999999999999999999999999888888877654
No 233
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.36 E-value=0.33 Score=52.84 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=58.0
Q ss_pred hHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChH------HHHHH
Q 000053 1672 PEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPL------EARII 1745 (2576)
Q Consensus 1672 ~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~------~a~~~ 1745 (2576)
...|+..|.. ++..|+|++|..+|.+|-..... ... .-...+++ .....
T Consensus 11 a~~~~~~G~~---------------~~~~~~~~~A~~~y~~al~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNE---------------LFVQKDYKEAIDAYRDALTRLDT-----LIL-----REKPGEPEWVELDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHH-----HHH-----TSCTTSHHHHHHHHTHHHH
T ss_pred HHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHHHHH-----hcc-----cCCCCHHHHHHHHHHHHHH
Confidence 4567777766 89999999999999976432100 000 00000000 01223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1746 LREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1746 ~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+...|..|.+.|++++|+.+|. +|.++-. .....+...|.++...|+|++|.+.|.+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~------~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSS------EVLKREE--TNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH------HHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHH------HHHhcCC--cchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 4555666666666666664443 2333311 1123456667777777777777766655
No 234
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.32 E-value=0.079 Score=65.80 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.--|++||||||||+++..+...+ .+..++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~ 78 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSIS 78 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEE
Confidence 3567999999999999998876654 244444443
No 235
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.30 E-value=0.9 Score=52.14 Aligned_cols=126 Identities=10% Similarity=-0.001 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcC----CH----HH
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGS----FL----AE 1816 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kag----d~----~k 1816 (2576)
.+...|..|...|++++|.++|.+ |.++... .+...+...|.++...|+|++|.+.|.++- +. -.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~------al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSE------YLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH------HHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 456677778888888888877654 3333210 112345568889999999999999988842 22 23
Q ss_pred HHHHHHcCCCHHHHHHHHHhhhhcCCcccccccchHHHHHHhHHhHHHHHHHHHHcCChHHHHHHHHH
Q 000053 1817 CLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1817 Ai~~y~k~k~fd~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~~le~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
.-.+|.+.+.+++|+..+++.-+..+.+. .............+..+.+.|+++.|++.++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNA-------TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCH-------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcH-------HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 33466778899999998885444333321 11111112233345556778899888887764
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.28 E-value=0.1 Score=64.20 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+.+|.||||+|||||+..+...+...+.+|++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5688999999999999999999888888888887663
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.26 E-value=0.12 Score=68.10 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHH
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
+-++.++.--...++.+|.||||+|||+.+..++..+... |.+|+.++.-..+ .+++.|+...
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~-~~l~~r~~~~ 293 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESV-EETAEDLIGL 293 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCH-HHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCH-HHHHHHHHHH
Confidence 3445555433347899999999999999999999999887 8999999875543 4778887644
No 238
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.17 E-value=0.16 Score=64.04 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 217 IKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 217 i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
++.+........+-.|.|+||+|||+++..+...+...|++|++++..
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 333333344466889999999999999999999999999999888753
No 239
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.17 E-value=0.21 Score=63.52 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .+.-.+|.+|+|||||.+....+...+.. +.++|+++||...+.++.+++.++.
T Consensus 53 ~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 53 ENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp HHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 4455555553 24578999999999998865444444432 4489999999999999988887663
No 240
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.16 E-value=0.18 Score=63.61 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.4
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhC-CCeEEEEe
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCT 262 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~-~~rVLv~A 262 (2576)
..+|.||||||||+++..+...+... +..++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999887776655 56666554
No 241
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.16 E-value=0.064 Score=64.73 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEE
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 259 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVL 259 (2576)
...--||+||||||||+++..+... .+...+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~ 93 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE---SNFPFI 93 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH---HTCSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH---hCCCEE
Confidence 3567899999999999999887665 255543
No 242
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.13 E-value=0.76 Score=46.70 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=56.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..+...|++++|.+.|+++-.... .++ ..+...+..+...|++++|.++|.++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~------------------~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~--- 61 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP------------------RSA----EAWYNLGNAYYKQGDYDEAIEYYQKA--- 61 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT------------------TCH----HHHHHHHHHHHHHTCHHHHHHHHHHH---
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC------------------cch----hHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 45558889999999999997532100 000 11233444555555555555544331
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcC-----C---HHHHHHHHHcCCCHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGS-----F---LAECLDVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kag-----d---~~kAi~~y~k~k~fd~A~~l~r 1835 (2576)
.++.. .....+...|.++...|++++|.++|.++- + +.....+|.+.+.+++|...++
T Consensus 62 ---~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 62 ---LELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ---HHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ---HHHCC--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 11100 011234445555666666666665555421 1 1122334555666666666655
No 243
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.066 Score=68.77 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
+.=-|+.||||||||.++.++... .+...+.++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e---~~~~f~~v~~s~ 250 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ---TNATFLKLAAPQ 250 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH---HTCEEEEEEGGG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH---hCCCEEEEehhh
Confidence 455789999999999998877544 366777766643
No 244
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.00 E-value=0.16 Score=61.69 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=50.6
Q ss_pred CCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEE
Q 000053 1068 FEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLF 1144 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~ 1144 (2576)
+.+++-|.+++.. .+..+|.|+.|||||.+++.-+.. .+. . ...++|+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~-----~~~-~-----------------------~~~~~li 162 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARY-----YLE-N-----------------------YEGKILI 162 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHH-----HHH-H-----------------------CSSEEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHH-----HHH-c-----------------------CCCeEEE
Confidence 7899999999953 357889999999999998765531 110 0 1148999
Q ss_pred EEcCHHHHHHHHHHHHhh
Q 000053 1145 VTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1145 vTfS~~la~eik~ri~~l 1162 (2576)
++.++.++.++.+.+.+.
T Consensus 163 l~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 163 IVPTTALTTQMADDFVDY 180 (282)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHh
Confidence 999999999998877765
No 245
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.98 E-value=0.091 Score=64.12 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.--+|+||||||||+++..+...+ +...+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~ 86 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNIS 86 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEee
Confidence 4577999999999999988775543 45554443
No 246
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.97 E-value=0.12 Score=71.17 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=49.0
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
....+..++. +...+|.||+|+|||.++...+...+..+.++++++||...+.++..++.
T Consensus 30 Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 30 QAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp CHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH
Confidence 5666666543 45789999999999999876666666678999999999999999988873
No 247
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.94 E-value=0.23 Score=71.31 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhccccc
Q 000053 1065 DLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILR 1141 (2576)
Q Consensus 1065 d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~r 1141 (2576)
.++|.+++-|.++|.. ..+++|.|+.|||||++...-++.. + ....+
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-----l-------------------------~~g~r 229 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-----L-------------------------KNKQR 229 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-----H-------------------------HTTCE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-----H-------------------------hcCCe
Confidence 4789999999999943 4589999999999999987766421 1 11268
Q ss_pred EEEEEcCHHHHHHHHHHHHhhh
Q 000053 1142 QLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1142 iL~vTfS~~la~eik~ri~~l~ 1163 (2576)
+++++.++.|+.++.+++.+..
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHHHh
Confidence 9999999999999988887653
No 248
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.93 E-value=0.16 Score=70.22 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=47.0
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
.-.||+||.|||||.+....+...+..|.++++++||..-+.+..+++.+..
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3679999999999999988888888889999999999999999999998775
No 249
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.92 E-value=0.14 Score=67.16 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec---ChHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP---TIVAIKEL 271 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap---TN~AVd~V 271 (2576)
+.+-+|.|+||+|||||+..|+..+...|++|++++. .+.|++++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 3466777999999999999999999999999999887 55666544
No 250
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.91 E-value=0.19 Score=66.47 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..+++. .+.-.+|.+|.|||||.+....+...+.. +.++|+++||..-+.++.+++.++
T Consensus 147 ~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 147 EKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp SSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 3445555554 24578999999999999876555555543 458999999999999999988765
No 251
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.88 E-value=0.36 Score=52.69 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=56.5
Q ss_pred HHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHH
Q 000053 1696 WLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERA 1775 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A 1775 (2576)
.++..++|++|..+|+++-... |.. ...+...|..|...|++++|+.+|.+ |
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~------a 71 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA---------------------PAN-PIYLSNRAAAYSASGQHEKAAEDAEL------A 71 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHH------H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---------------------CcC-HHHHHHHHHHHHHccCHHHHHHHHHH------H
Confidence 3888999999999999753321 110 12346667778888888888866654 4
Q ss_pred HHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1776 GTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1776 ~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
.++... ....+...|.++...|+|++|.+.|.+
T Consensus 72 l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 72 TVVDPK--YSKAWSRLGLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444111 234566778888888888888877665
No 252
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.87 E-value=0.65 Score=48.72 Aligned_cols=99 Identities=19% Similarity=0.127 Sum_probs=61.1
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
.....|...|.. ++..++|++|..+|+++-...- +.......+...
T Consensus 26 ~~~~~~~~~a~~---------------~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~~~~ 71 (148)
T 2dba_A 26 SSVEQLRKEGNE---------------LFKCGDYGGALAAYTQALGLDA-------------------TPQDQAVLHRNR 71 (148)
T ss_dssp CCHHHHHHHHHH---------------HHTTTCHHHHHHHHHHHHTSCC-------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHHhCCHHHHHHHHHHHHHHcc-------------------cchHHHHHHHHH
Confidence 355667777766 8889999999999997644211 011112345666
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|..|...|++++|.++|.+ +.++.. .....+...|.++...|++++|.++|.+
T Consensus 72 a~~~~~~~~~~~A~~~~~~------~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 72 AACHLKLEDYDKAETEASK------AIEKDG--GDVKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHH------HHHHTS--CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHH------HHhhCc--cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777778888888766654 333311 1123455666667777777777666654
No 253
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.87 E-value=0.07 Score=66.24 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.--|++||||||||+++.++...+ +..++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3457999999999999988775543 666666554
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.85 E-value=0.083 Score=68.14 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+-+|.||||+||||++..|...+...|++|++++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3588899999999999999999999989999988864
No 255
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=91.85 E-value=0.17 Score=59.39 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHH-HHHHHh--CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSML-LVILLQ--MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~L-l~~Ll~--~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
..+..++.. .-.+|.+|+|||||.+.... +..+.. .+.++|+++||..-+.++.+++.++
T Consensus 53 ~~i~~~~~~----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 53 KAIPLGRCG----LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp HHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 344444442 34799999999999885543 333332 3579999999999999999888765
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.82 E-value=0.13 Score=65.04 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHHHHh--cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 214 LKIIKELLC--TDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 214 ~~~i~~vl~--~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
+.-++.+|. --....+.+|.||||+|||+++..++..+...+.+|+.++.-.
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 445556664 2233779999999999999999999999998899999888754
No 257
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.80 E-value=0.12 Score=64.40 Aligned_cols=36 Identities=44% Similarity=0.588 Sum_probs=27.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecCh
Q 000053 230 QLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTI 265 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN 265 (2576)
-+|+||||||||+++..+...+.. ....++-+.++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 799999999999999988877753 244566555543
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.80 E-value=0.13 Score=63.00 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHh-CCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~-~~~rVLv~Ap 263 (2576)
+.+.+|.||+|+|||||+..+...+.. .|++|++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 678999999999999999999988875 7989888764
No 259
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.77 E-value=0.16 Score=64.18 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|+|||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 36 ~~~i~~~~~~----~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 36 HECIPQAILG----MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HHHHHHHTTT----CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC----CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 3444445442 34899999999999776655554443 25699999999999999988887663
No 260
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.70 E-value=0.15 Score=70.41 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCChhHHHH-HHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVS-MLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs-~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
+...+|.||.|+|||.++. .++..+...+.++++++||...+.+++.++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~ 89 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ 89 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH
Confidence 5789999999999999884 5555555579999999999999999999884
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.69 E-value=0.2 Score=60.65 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhC----------CCeEEEEecChHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQM----------KFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~----------~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
..+.+|.||||+|||+++..++..+..- +.+++.++.-+.. +.+..|+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 6799999999999999999988755431 3577776655433 555555543
No 262
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.65 E-value=0.1 Score=65.69 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
.--||+||||||||+++..+...+ +..++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 346899999999999998887665 566665544
No 263
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.65 E-value=0.13 Score=64.80 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+..-||+||||||||+++..+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988876665
No 264
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=91.65 E-value=0.24 Score=66.94 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=50.0
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHH-HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVS-MLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs-~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
..+++..|..+-....-.+|..|.|||||-... .++..+...+.+|++++||+.=..++.+-+.++.
T Consensus 8 Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 8 QVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp HHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 345556665555456789999999999996644 4455555678999999999998888887666554
No 265
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.64 E-value=0.077 Score=67.29 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.=-|..||||||||.++.++... .+...+.++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e---~~~~f~~v~~s 216 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH---TDCKFIRVSGA 216 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH---HTCEEEEEEGG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh---hCCCceEEEhH
Confidence 445789999999999998877554 36677776664
No 266
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.63 E-value=0.18 Score=58.30 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=35.1
Q ss_pred HHHHHHHh-cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 215 KIIKELLC-TDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 215 ~~i~~vl~-~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+-++.++. --....+.+|.||||+|||+++..++. ..+.+++.++..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 34555554 344578999999999999999998877 567777776543
No 267
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.60 E-value=0.13 Score=63.44 Aligned_cols=56 Identities=27% Similarity=0.273 Sum_probs=34.4
Q ss_pred HHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCC--CeEEEEec-ChHHHHHHHHHHH
Q 000053 220 LLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK--FRTLVCTP-TIVAIKELASRVV 276 (2576)
Q Consensus 220 vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~--~rVLv~Ap-TN~AVd~V~~RL~ 276 (2576)
.+.....+. -+|+||||||||+++..+...+...+ ..++.+.+ ....++.+.+.+.
T Consensus 40 ~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (327)
T 1iqp_A 40 YVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK 98 (327)
T ss_dssp HHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred HHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHH
Confidence 344443334 79999999999999998888776443 22444333 3344444444443
No 268
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.078 Score=68.17 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
+.=-|+.||||||||.++.++...+ +..++.++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~ 250 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASG 250 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhh
Confidence 4567889999999999988876543 66777666543
No 269
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.59 E-value=0.29 Score=61.80 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=59.5
Q ss_pred ccCHHHHHhhcccccccccCCCCC-CCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPFE-VTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f~-Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
.+++.+...+... .|. +++-|.+++.. ..+++|.|+.|||||.+.+.-++.. +..
T Consensus 14 ~l~~~l~~~l~~~--------g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~-----l~~-------- 72 (391)
T 1xti_A 14 LLKPELLRAIVDC--------GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ-----LEP-------- 72 (391)
T ss_dssp CCCHHHHHHHHHH--------SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHH-----CCC--------
T ss_pred CCCHHHHHHHHHC--------CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHh-----hcc--------
Confidence 5667766666431 144 99999999943 4589999999999998877666421 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.....++|+++.++.++.++.+.+.++.
T Consensus 73 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 73 --------------VTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp --------------CTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred --------------cCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 0122689999999999999988777663
No 270
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.59 E-value=0.19 Score=65.18 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=50.3
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
.++-++.++.--...++.+|.||||+|||+.+..++......|.+|++++.-.. ..+++.|+...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~ 247 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVT 247 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHH
Confidence 345566666433447899999999999999999999999988999999987543 34566777643
No 271
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.59 E-value=0.16 Score=63.98 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhC---CCeEEEEe
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCT 262 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---~~rVLv~A 262 (2576)
..+...+|+||||||||+++..+...+... +..++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 346789999999999999999888777654 56665554
No 272
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.56 E-value=0.29 Score=63.56 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ-MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
++-++.++.--....+.+|.||||+|||+.+..++..... .|.+|++++.-..+ .++..|+...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~-~~l~~R~~~~ 251 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPA-AQLTLRMMCS 251 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCH-HHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHH
Confidence 4456666644445789999999999999999999998886 48899999886554 4777787643
No 273
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.49 E-value=0.45 Score=51.52 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=55.9
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
..++..|+|++|..+|+++-.. +|... ..+...|..|...|++++|+.+|.+
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~------ 80 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVL---------------------DHYDS-RFFLGLGACRQAMGQYDLAIHSYSY------ 80 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---------------------CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHcCChHHHHHHHHHHHHc---------------------CcccH-HHHHHHHHHHHHHhhHHHHHHHHHH------
Confidence 3388899999999999965321 11111 1235667788888888888877754
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.++...|++++|.+.|.+
T Consensus 81 al~l~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 81 GAVMDI--XEPRFPFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCC--CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444421 1234566677777777777777777655
No 274
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.49 E-value=0.29 Score=64.81 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1067 PFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
||++++-|.++|.. ..+++|.++.|||||.+.+.-++.. +... ......++|
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~-----~~~~--------------------~~~~~~~~l 56 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHH-----LKKF--------------------PCGQKGKVV 56 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHTC--------------------CSSCCCCEE
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHH-----HHhc--------------------ccCCCCEEE
Confidence 58999999999943 4689999999999999877766421 1100 001136899
Q ss_pred EEEcCHHHHHHHHHHHHhhh
Q 000053 1144 FVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l~ 1163 (2576)
+++.++.|+.++.+.+.++.
T Consensus 57 il~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 57 FFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp EECSSHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHh
Confidence 99999999999988877653
No 275
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=91.48 E-value=0.18 Score=71.82 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=53.9
Q ss_pred CCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhccccc
Q 000053 1065 DLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILR 1141 (2576)
Q Consensus 1065 d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~r 1141 (2576)
.+||+|++-|.++|.. ..+++|.|+.|||||++...-+... . ....+
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-----~-------------------------~~g~~ 84 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-----H-------------------------RNMTK 84 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-----H-------------------------HTTCE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-----H-------------------------hcCCe
Confidence 4889999999999954 4589999999999999877655321 0 01258
Q ss_pred EEEEEcCHHHHHHHHHHHHhh
Q 000053 1142 QLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1142 iL~vTfS~~la~eik~ri~~l 1162 (2576)
+++++.++.|+.++.+++.+.
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTT
T ss_pred EEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999988877764
No 276
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.43 E-value=0.29 Score=62.33 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=60.0
Q ss_pred cccCHHHHHhhcccccccccCCCC-CCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPF-EVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f-~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
+.+++.+...+... .| .+++-|++++. ...+++|.|+.|||||.+.+.-++.. +..
T Consensus 42 ~~l~~~l~~~l~~~--------g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~-----l~~------- 101 (410)
T 2j0s_A 42 MGLREDLLRGIYAY--------GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC-----LDI------- 101 (410)
T ss_dssp GCCCHHHHHHHHHH--------TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHT-----CCT-------
T ss_pred cCCCHHHHHHHHHc--------CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHH-----Hhh-------
Confidence 35667777666432 13 38999999994 34589999999999999887766421 100
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.|+.++.+.+.++
T Consensus 102 ---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 102 ---------------QVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ---------------ccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 012368999999999999998877765
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.41 E-value=0.057 Score=66.35 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
.++.+|.||||||||+++..+...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 557899999999999999988665
No 278
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=91.38 E-value=0.14 Score=69.26 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCCCChhHHH-HHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktI-s~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
.+...++.+|+|||||.+. ..++..++..+.++|+++||..-+.++.+++.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 3668899999999999984 67777888888999999999998888776553
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.38 E-value=0.18 Score=56.50 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.5
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVA 267 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~A 267 (2576)
.+..|.||+|+||||++..++..|-..|.+|-++......
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 4778999999999999999999998889998887766554
No 280
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.38 E-value=0.06 Score=64.72 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
--+|+||||||||+++..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999877553
No 281
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.33 E-value=0.53 Score=49.03 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=59.3
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
.++..|...|.. ++..|+|++|..+|+++-... |.. ...+...
T Consensus 7 ~~~~~~~~~g~~---------------~~~~~~~~~A~~~~~~al~~~---------------------~~~-~~~~~~l 49 (137)
T 3q49_B 7 PSAQELKEQGNR---------------LFVGRKYPEAAACYGRAITRN---------------------PLV-AVYYTNR 49 (137)
T ss_dssp CCHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHH
T ss_pred ccHHHHHHHHHH---------------HHHhCcHHHHHHHHHHHHhhC---------------------cCc-HHHHHHH
Confidence 356667777766 888999999999999753321 110 1234666
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|..|...|++++|..+|.+ |.++... ....+...|.++...|++.+|.+.|.+
T Consensus 50 ~~~~~~~~~~~~A~~~~~~------al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 50 ALCYLKMQQPEQALADCRR------ALELDGQ--SVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHH------HHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHH------HHHhCch--hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777788888888766543 3333111 123455566666666666666665544
No 282
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.33 E-value=0.49 Score=50.48 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
..++..|+|++|..+|+++-.. +|... ..+...|..|...|++++|+.+|.+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~---------------------~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~------ 77 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCML---------------------DHYDA-RYFLGLGACRQSLGLYEQALQSYSY------ 77 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---------------------CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHHccHHHHHHHHHHHHHh---------------------CCccH-HHHHHHHHHHHHHhhHHHHHHHHHH------
Confidence 3388899999999999864321 11111 1345667778888888888877654
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.++...|++++|.+.|.+
T Consensus 78 al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 78 GALMDI--NEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444421 1224455667777777777777766654
No 283
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.29 E-value=0.17 Score=64.44 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++
T Consensus 65 ~~ai~~i~~~----~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 65 QRAIKQIIKG----RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 4445555543 23899999999999887765555543 4789999999999999998888765
No 284
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.28 E-value=0.13 Score=62.92 Aligned_cols=42 Identities=36% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCHHHHHHHHhc---CCCCCeEEEEcCCCCChhHHHHHHHHHHHhC
Q 000053 212 GNLKIIKELLCT---DSGATVQLIWGPPGTGKTKTVSMLLVILLQM 254 (2576)
Q Consensus 212 ~~~~~i~~vl~~---~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~ 254 (2576)
++-.+++.+... ...+. -+|+||||||||+++..+...+...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCC
Confidence 455555544432 22234 7999999999999999888877644
No 285
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.25 E-value=2.8 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHcC
Q 000053 1692 FVCLWLFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1692 ~~~~~l~~~~~ye~A~k~f~rag 1714 (2576)
.+|.++...|+|++|..+|++|-
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 35666778899999999999863
No 286
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.24 E-value=0.17 Score=60.65 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=34.8
Q ss_pred chhhHhhhcccCC-CHHH----HHHHHhcC-CCCCeEEEEcCCCCChhHHHHHHHHH
Q 000053 200 SNRRIWNSLHMKG-NLKI----IKELLCTD-SGATVQLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 200 t~~ri~~~l~~~~-~~~~----i~~vl~~~-~~~~v~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
..++|.+-|...+ |.-. +...|... +...--+++||||||||.++.++...
T Consensus 71 ~~n~i~~~l~~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 71 SSNRIYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp GGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4556666665543 4444 44455554 33557999999999999999987664
No 287
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.24 E-value=0.092 Score=62.73 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.-.+|.||||||||+++..+...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 347899999999999988775543
No 288
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.23 E-value=0.093 Score=64.45 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+..-||+||||||||+++.++...+ +...+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 5678999999999999988776543 45554443
No 289
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.20 E-value=0.29 Score=67.54 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHhhcC---------CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhh
Q 000053 1066 LPFEVTDEQLDMILF---------PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTE 1136 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---------~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~ 1136 (2576)
.||++|+.|+++|.. +.+.+|.|+.|||||.+...-++.. +.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-----l~------------------------ 415 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-----YE------------------------ 415 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-----HH------------------------
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-----HH------------------------
Confidence 578999999999842 2478999999999999988776421 10
Q ss_pred cccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1137 RVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1137 ~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
...++++++.++.||.++.+.+.++.
T Consensus 416 -~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 416 -AGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp -HTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 12689999999999999988777653
No 290
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.19 E-value=0.34 Score=49.77 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=56.7
Q ss_pred CChHHHHHHhHHHHHHhhhhHHHHHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHH
Q 000053 1670 SSPEEWKSRGIKVCEIFKKFIIFVCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREA 1749 (2576)
Q Consensus 1670 ss~~eW~~~g~~~~~~y~~~~~~~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eA 1749 (2576)
.+...|...|.. ++..++|++|.++|+++-... |.. ...+...
T Consensus 14 ~~~~~~~~~~~~---------------~~~~~~~~~A~~~~~~al~~~---------------------~~~-~~~~~~l 56 (133)
T 2lni_A 14 DLALMVKNKGNE---------------CFQKGDYPQAMKHYTEAIKRN---------------------PKD-AKLYSNR 56 (133)
T ss_dssp CHHHHHHHHHHH---------------HHHTTCSHHHHHHHHHHHTTC---------------------TTC-HHHHHHH
T ss_pred ccHHHHHHHHHH---------------HHHcCCHHHHHHHHHHHHHcC---------------------CCc-HHHHHHH
Confidence 345567777765 888999999999999764321 110 1234566
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1750 AKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1750 A~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|..|...|++++|.++|.+ |.++.. .....+...|.++...|++++|.+.|.+
T Consensus 57 a~~~~~~~~~~~A~~~~~~------a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 57 AACYTKLLEFQLALKDCEE------CIQLEP--TFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHTTTTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH------HHHhCC--CchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777778888888766643 333311 1123344555555555555555555443
No 291
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.14 E-value=0.068 Score=66.42 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 211 KGNLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 211 ~~~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.++-.+++.++..-....--+++||||||||+++..+...+
T Consensus 30 ~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 30 VGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred eCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45666666665544345578999999999999998775543
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.13 E-value=0.16 Score=65.59 Aligned_cols=44 Identities=36% Similarity=0.415 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhC-CCeEEEEec---ChHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTP---TIVAIKE 270 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-~~rVLv~Ap---TN~AVd~ 270 (2576)
+.+-+|.||+|+|||||++.|...|... |+||++++. .+.|+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 147 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHH
Confidence 4467777999999999999999999998 999998765 3355554
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.13 E-value=0.21 Score=63.01 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.--|++||||||||+++..+...+ +...+.+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 4567999999999999888776554 5666665544
No 294
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.12 E-value=2.1 Score=51.69 Aligned_cols=58 Identities=12% Similarity=-0.114 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 000053 1747 REAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGS 1812 (2576)
Q Consensus 1747 ~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kag 1812 (2576)
...|..+...|++++|...|.+ |.++.. .....+...|..+...|++++|.++|.++-
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~------al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXD------AWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------HHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHH------HHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5666677777888888766554 333211 112345667778888888888888888753
No 295
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.11 E-value=0.16 Score=62.85 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+-.|.||+|+|||||+..+...+...+.+|+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5688899999999999999999988888999988753
No 296
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.11 E-value=0.12 Score=65.62 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
..--+++||||||||+++..+...+ +.+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEec
Confidence 4467999999999999988776555 55555543
No 297
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.09 E-value=0.28 Score=69.90 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhccccc
Q 000053 1065 DLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILR 1141 (2576)
Q Consensus 1065 d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~r 1141 (2576)
.++|+|++-|.++|.. ..+++|.|+.|||||.+...-+... + . ...+
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-----l-~------------------------~g~r 131 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-----L-K------------------------NKQR 131 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-----H-H------------------------TTCE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-----h-c------------------------cCCe
Confidence 4789999999999943 5689999999999999986655321 1 0 1268
Q ss_pred EEEEEcCHHHHHHHHHHHHhhh
Q 000053 1142 QLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1142 iL~vTfS~~la~eik~ri~~l~ 1163 (2576)
+|+++.++.|+.+..+.+.+..
T Consensus 132 vL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 132 VIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHHHHh
Confidence 9999999999999888777653
No 298
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.08 E-value=0.13 Score=64.89 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.--||+||||||||+++..+...+ +..++.+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 5568999999999999998875543 6666665543
No 299
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.08 E-value=0.17 Score=66.05 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=28.1
Q ss_pred CCHHHHHHH---HhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh
Q 000053 212 GNLKIIKEL---LCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ 253 (2576)
Q Consensus 212 ~~~~~i~~v---l~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~ 253 (2576)
|+-..++.+ |.....+++ |+.||||||||+++-.+...+..
T Consensus 184 Gr~~~i~~l~~~l~r~~~~~~-LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 184 GRSKEIQRVIEVLSRRTKNNP-VLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CCHHHHHHHHHHHHCSSSCEE-EEESCTTTTTHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHhccCCCCe-EEECCCCCCHHHHHHHHHHHHHh
Confidence 444444444 333333444 89999999999999888777754
No 300
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.07 E-value=0.17 Score=63.68 Aligned_cols=33 Identities=27% Similarity=0.177 Sum_probs=25.5
Q ss_pred HHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHH
Q 000053 220 LLCTDSGATVQLIWGPPGTGKTKTVSMLLVILL 252 (2576)
Q Consensus 220 vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll 252 (2576)
.+.....+..-+|+||||||||+++..+...+.
T Consensus 31 ~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344454456789999999999999988876664
No 301
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.06 E-value=0.38 Score=61.28 Aligned_cols=100 Identities=10% Similarity=0.095 Sum_probs=60.5
Q ss_pred ccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNS 1122 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~ 1122 (2576)
.+++.+...+... +. ..+++-|.++|. ...+++|.|+.|||||.+.+.-++.........
T Consensus 21 ~l~~~l~~~l~~~--~~-----~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~---------- 83 (417)
T 2i4i_A 21 EMGEIIMGNIELT--RY-----TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG---------- 83 (417)
T ss_dssp CCCHHHHHHHHHH--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC----------
T ss_pred CCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc----------
Confidence 4667777666431 21 368999999984 356899999999999997666554221110000
Q ss_pred cchhhhhh-hhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1123 SQETEAEK-DLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1123 ~~~~~~~~-~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....+.. ..........++|+++.++.||.++.+.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF 124 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHH
Confidence 00000000 00000112368999999999999998887765
No 302
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.03 E-value=0.29 Score=64.82 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHHHh
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTIVAIKELASRVVKLVKE 281 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-----~~rVLv~ApTN~AVd~V~~RL~~lv~e 281 (2576)
..+..++.. .-.+|.+|+|+|||.+....+..++.. +.++|+++||..-+.++.+.+.++...
T Consensus 11 ~~i~~~~~~----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 11 ELALPAKKG----KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp HHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 445555532 347999999999999988777777765 789999999999999999998887643
No 303
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.03 E-value=0.47 Score=62.00 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=61.0
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC-----CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhcccccc
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF-----PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGV 1119 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~-----~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~ 1119 (2576)
+.+++.+...+... +. -.+++-|.+++.. +.+++|.|+.|||||.+.+.-++. .+..
T Consensus 97 ~~l~~~l~~~l~~~--g~-----~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~-----~l~~------ 158 (479)
T 3fmp_B 97 LRLKPQLLQGVYAM--GF-----NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS-----QVEP------ 158 (479)
T ss_dssp GTCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT-----TCCT------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH-----HHhh------
Confidence 45677777776542 22 3589999999932 358999999999999987665631 1110
Q ss_pred CCCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhhc
Q 000053 1120 NNSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMKS 1164 (2576)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~~ 1164 (2576)
.....++|+++.++.||.++.+.+.++..
T Consensus 159 ----------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 187 (479)
T 3fmp_B 159 ----------------ANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (479)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ----------------cCCCCcEEEEeChHHHHHHHHHHHHHHHh
Confidence 11225899999999999999888877643
No 304
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.01 E-value=0.24 Score=62.48 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=60.3
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+.+++.+...+... +. ..+++-|++++.. ..+++|.|+.|||||.+...-++.. +..
T Consensus 26 ~~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----l~~-------- 85 (394)
T 1fuu_A 26 MELDENLLRGVFGY--GF-----EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR-----IDT-------- 85 (394)
T ss_dssp GCCCHHHHHHHHHH--TC-----CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHH-----CCT--------
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH-----hhc--------
Confidence 35677777766442 11 3689999999943 5689999999999998876655321 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.++.++.+.+.++
T Consensus 86 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 86 --------------SVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp --------------TCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 112368999999999999998877765
No 305
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.00 E-value=0.18 Score=61.98 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=27.3
Q ss_pred HHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC
Q 000053 217 IKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM 254 (2576)
Q Consensus 217 i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~ 254 (2576)
+...+.....+. -+|+||||||||+++..+...+...
T Consensus 33 l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 33 LQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp HHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 333444444444 8999999999999999888887653
No 306
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.98 E-value=0.2 Score=61.76 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ 261 (2576)
....-+|+||||||||+++..+...+ +.++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~ 69 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVT 69 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 34567999999999999998886654 4555443
No 307
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.37 Score=66.43 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=57.5
Q ss_pred ccCHHHHHhhcccccccccCCCC-CCCHHHHHhhcC----CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPF-EVTDEQLDMILF----PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f-~Lt~EQ~~iI~~----~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
.+++.+...+.. ..| .+++-|.+++.. ..+++|.|+.|||||+++..-++.. +..
T Consensus 14 ~l~~~~~~~l~~--------~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~-----~~~------- 73 (715)
T 2va8_A 14 KLPSNVIEIIKK--------RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISF-----LLK------- 73 (715)
T ss_dssp SSCHHHHHHHHT--------TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHH-----HHH-------
T ss_pred CCCHHHHHHHHh--------CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHH-----HHH-------
Confidence 456665554433 224 699999999943 4589999999999999987766421 100
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
...++++++.++.||.++.+++.++
T Consensus 74 -----------------~~~~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 74 -----------------NGGKAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp -----------------SCSEEEEECSCHHHHHHHHHHHGGG
T ss_pred -----------------CCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 1268999999999999998877544
No 308
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.96 E-value=0.27 Score=65.19 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTIVAIKELASRVVKLVK 280 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-----~~rVLv~ApTN~AVd~V~~RL~~lv~ 280 (2576)
...+..++.. .-.+|.+|+|+|||.+....+..++.. +.++|+++||..-+.++.+.+.++..
T Consensus 13 ~~~i~~~~~~----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 13 IELAQPAING----KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcC----CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3455666543 237999999999999988777777765 78999999999999999999887763
No 309
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=90.92 E-value=0.16 Score=69.16 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCCChhHHH-HHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTV-SMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktI-s~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
.+...+|+||+|||||.+. ..++..+...+.++|+++||..-+.++.+++.
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh
Confidence 3668899999999999984 56776777888999999999998887766553
No 310
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.89 E-value=0.26 Score=61.93 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 218 KELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 218 ~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
...+.......+.++.|.+|+|||++.+++...|...|+|||++.--
T Consensus 17 ~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 17 EKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp HHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred HHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34445556688999999999999999999999999999999999854
No 311
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.84 E-value=2 Score=55.65 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=17.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHcC
Q 000053 1693 VCLWLFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~rag 1714 (2576)
+|..++..|++++|.+.|+++-
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa 30 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLA 30 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHH
Confidence 4555778889999999998864
No 312
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.82 E-value=0.3 Score=70.61 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCC--CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSG--ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~--~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...|+.++....+ +.-.+|+||.|+|||.+....+..++..|.++++++||..-+.+..+++.+..
T Consensus 609 ~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 609 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 3445555553221 23689999999999999887777777889999999999999999999887654
No 313
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.81 E-value=0.39 Score=62.00 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=60.8
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
..+++.+...+... +. -.+|+-|.++|. ...++++.|+.|||||.+.+.-++.. +...+.
T Consensus 61 ~~l~~~l~~~l~~~--g~-----~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~-----l~~~~~----- 123 (434)
T 2db3_A 61 ADLRDIIIDNVNKS--GY-----KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK-----LLEDPH----- 123 (434)
T ss_dssp SCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----HHHSCC-----
T ss_pred cCCCHHHHHHHHHc--CC-----CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHH-----HHhccc-----
Confidence 35677777776432 11 248999999994 35689999999999999866555421 110000
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.......++|+++.|+.||.++.+.+.++
T Consensus 124 ------------~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 124 ------------ELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp ------------CCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred ------------ccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 00112368999999999999998877766
No 314
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.78 E-value=0.29 Score=62.28 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=60.3
Q ss_pred cccCHHHHHhhcccccccccCCCCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1045 ~~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
..+++.+...+... +. ..+++-|.++|. ...+++|.|+.|||||.+...-++.. +..
T Consensus 45 ~~l~~~~~~~l~~~--~~-----~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~-----~~~-------- 104 (414)
T 3eiq_A 45 MNLSESLLRGIYAY--GF-----EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ-----IEL-------- 104 (414)
T ss_dssp GCCCHHHHHHHHHT--TC-----CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHH-----CCT--------
T ss_pred CCCCHHHHHHHHHc--CC-----CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHH-----Hhh--------
Confidence 45677776666442 11 358999999984 34589999999999999977766421 100
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
.....++|+++.++.|+.++.+.+.++
T Consensus 105 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 105 --------------DLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp --------------TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred --------------cCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 012368999999999999998887765
No 315
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.77 E-value=0.89 Score=46.23 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=36.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFD 1768 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~k 1768 (2576)
+|..++..|+|+.|..+|+++-...- .+ ...+...|..|...|++++|..+|.+
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~------------------~~----~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDP------------------TN----MTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------------------TC----HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC------------------cc----HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44558889999999999997643210 01 12345667778888888888877654
No 316
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.73 E-value=0.34 Score=64.20 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=51.6
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
.++++++-|.++|.. ..+++|.++.|||||.+.+.-++.. +... ......++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~-----~~~~--------------------~~~~~~~~ 58 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHH-----FQNM--------------------PAGRKAKV 58 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHTC--------------------CSSCCCCE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHH-----HHhC--------------------cccCCCeE
Confidence 358999999999943 4589999999999999877666421 1100 00113689
Q ss_pred EEEEcCHHHHHHHHHHHHhhh
Q 000053 1143 LFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1143 L~vTfS~~la~eik~ri~~l~ 1163 (2576)
|+++.++.|+.++.+.+.++.
T Consensus 59 lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 59 VFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp EEECSSHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHh
Confidence 999999999999988887764
No 317
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.73 E-value=0.12 Score=64.40 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
....+|+|||||||||++..+...+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678999999999999988776544
No 318
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=90.72 E-value=2.5 Score=48.44 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhH-hhcCChHHHHHHHHHHHHHHHHcCCHH---HHHHHHHH-
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADR-ISSSNPLEARIILREAAKIFEAIGKVD---SAAKCFFD- 1768 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~-l~~~~~~~a~~~~~eAA~~fe~~G~~~---~Aa~~y~k- 1768 (2576)
|..++..+++++|.++|++|-+..... ..+.+...... -...+.+++...|.+|++ .|... .-+.+|..
T Consensus 25 g~~~~~~~~~~~A~~~~~~a~~~g~~~--a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~----~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKAAAQGDGD--ALALLAQLKIRNPQQADYPQARQLAEKAVE----AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCHH--HHHHHHHHTTSSTTSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTCG
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcC
Confidence 334777999999999999986532111 11111111111 001156667777777754 34432 22456666
Q ss_pred ---cCCHHHHHHHHHHhCCc-------hHHHHHHHHHHH----cCCHHHHHHHHHHc
Q 000053 1769 ---MGEYERAGTIYLERCEE-------PELEKAGECFSL----AGCYKLAADVYARG 1811 (2576)
Q Consensus 1769 ---ag~~~~A~ely~~~~~~-------~~~~~aAe~~e~----~g~~~eAAelY~ka 1811 (2576)
.+++++|.++|.+.++. .-+...|.+|.. .+++.+|.+.|.++
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 78899999998887532 345677788887 77888888888875
No 319
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.70 E-value=0.13 Score=66.74 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.--|++||||||||+++.++...+ .+..++.+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 4567999999999999998776554 34555555544
No 320
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.70 E-value=0.15 Score=62.76 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeE--EEEec
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRT--LVCTP 263 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rV--Lv~Ap 263 (2576)
..+.--||+||||||||+++..+....-..+... +-|+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 3455679999999999998877765443444443 34443
No 321
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.69 E-value=0.56 Score=46.79 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYE 1773 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~ 1773 (2576)
|..++..|+|+.|..+|+++-... |.. ...+...|..|...|++++|..+|.+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~----- 63 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD---------------------PHN-HVLYSNRSAAYAKKGDYQKAYEDGCK----- 63 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC---------------------CCc-HHHHHHHHHHHHhhccHHHHHHHHHH-----
Confidence 334888999999999999753311 100 11345556667777777777766543
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1774 RAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1774 ~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+.++.. .....+...|.++...|++++|.+.|.+
T Consensus 64 -~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 64 -TVDLKP--DWGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp -HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333211 1123445556666666666666666554
No 322
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.64 E-value=0.17 Score=62.91 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
....-||+||||||||+++..+...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3445799999999999999887443
No 323
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.63 E-value=0.16 Score=63.01 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHh-cCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC------CCeEEEEecChH
Q 000053 214 LKIIKELLC-TDSGATVQLIWGPPGTGKTKTVSMLLVILLQM------KFRTLVCTPTIV 266 (2576)
Q Consensus 214 ~~~i~~vl~-~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~------~~rVLv~ApTN~ 266 (2576)
++-++.+|. --....+.+|.||||||||+++..++...... +.+++.++..+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 445666664 22347899999999999999999998876554 678888876653
No 324
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.62 E-value=0.38 Score=62.68 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
.++.|++.|.+++.. .+..+|.|+.|+|||.+.+.-+... ..++
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------------------------~~~~ 136 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------------------------STPT 136 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------------------------CSCE
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------------------------CCCE
Confidence 468899999999953 3569999999999999987766310 1689
Q ss_pred EEEEcCHHHHHHHHHHHHh
Q 000053 1143 LFVTVSPKLCFAVKQHISH 1161 (2576)
Q Consensus 1143 L~vTfS~~la~eik~ri~~ 1161 (2576)
|+++.++.|+.+..+++.+
T Consensus 137 Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 137 LIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp EEEESSHHHHHHHHHHGGG
T ss_pred EEEECCHHHHHHHHHHHHh
Confidence 9999999999988887665
No 325
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=90.59 E-value=0.17 Score=63.94 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHh---CCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ---MKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~---~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.++.
T Consensus 49 ~~~i~~i~~~----~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 49 QRAIMPIIEG----HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HHHHHHHHHT----CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC----CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 4445555553 23789999999999886544444433 46799999999999999988887653
No 326
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.11 Score=65.98 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
+.=-|..||||||||.++.++...+ +...+.++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 4567899999999999988775543 5666666553
No 327
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.51 E-value=3.3 Score=41.78 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHH
Q 000053 1746 LREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAEC 1817 (2576)
Q Consensus 1746 ~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kA 1817 (2576)
+...|..|...|++++|.++|.++ .+... .....+...|.++...|++++|.++|.++-. +-..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKA------LELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHH------HHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 344566666667777776665542 11100 1223456678888888888888888877421 1233
Q ss_pred HHHHHcCCCHHHHHHHHHh
Q 000053 1818 LDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1818 i~~y~k~k~fd~A~~l~r~ 1836 (2576)
..++.+.+.+++|.+++++
T Consensus 76 ~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 3456677778888777773
No 328
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.48 E-value=0.19 Score=61.54 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|.||||+||||++..+...+...|.+|+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4577788999999999999999999888999988765
No 329
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.46 E-value=0.7 Score=57.38 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHH----HHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEG----RSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMG 1770 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~----l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag 1770 (2576)
..++..++|++|..+|++|-...-.. ...+..+ .......+...|..|.+.|++++|+++|.+
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~-----------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~-- 221 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA-----------QALRLASHLNLAMCHLKLQAFSAAIESCNK-- 221 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHH-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--
Confidence 33888999999999999864321100 0000000 000122445566666677777777655543
Q ss_pred CHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1771 EYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARG 1811 (2576)
Q Consensus 1771 ~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~ka 1811 (2576)
|.++.. .....+...|.++...|+|++|.+.|.++
T Consensus 222 ----al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 222 ----ALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp ----HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333311 12345667788888888888888888774
No 330
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.41 E-value=0.16 Score=63.03 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=38.4
Q ss_pred HHhcCCC-CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 220 LLCTDSG-ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 220 vl~~~~~-~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
.+.+... ..+.++.|.+|+|||++.+++...|...|+|||++..-
T Consensus 6 ~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 6 LFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp GCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3444444 67999999999999999999999999999999998864
No 331
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.33 E-value=0.2 Score=65.16 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.--|+.||||||||+++.++...+ ..+...+.+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeH
Confidence 3457999999999999998776664 22245554444
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.27 E-value=0.11 Score=61.86 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
.+|+||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999998877543
No 333
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.25 E-value=0.26 Score=64.27 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
...++.++... -.+|.||+|+|||.+...++..+ +.++|+++||..-+.+..+++.+
T Consensus 99 ~~ai~~i~~~~----~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 99 EKALERWLVDK----RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp HHHHHHHTTTT----EEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcC----CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh
Confidence 44555555432 38999999999999987766554 89999999999888888877764
No 334
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.24 E-value=0.26 Score=57.16 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||+|+|||+.+..++..+...|.+|++.-|.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 46899999999999999999999999999999999885
No 335
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.19 E-value=0.4 Score=68.90 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
++|++|+-|.++|.. ..+++|.|+.|||||.+.+.-++.. + ....++
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~-----~-------------------------~~~~~~ 124 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-----A-------------------------RKGKKS 124 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH-----H-------------------------TTTCCE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH-----H-------------------------hcCCeE
Confidence 457899999999943 4589999999999999665554311 1 112689
Q ss_pred EEEEcCHHHHHHHHHHHHhh
Q 000053 1143 LFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1143 L~vTfS~~la~eik~ri~~l 1162 (2576)
|+++.++.||.++.+++.++
T Consensus 125 Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 125 ALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp EEEESSHHHHHHHHHHHHTT
T ss_pred EEEechHHHHHHHHHHHHHh
Confidence 99999999999999988775
No 336
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.14 E-value=0.12 Score=66.53 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
+.=-|+.||||||||.++.++... .+...+.++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e---~~~~fi~vs~s~ 278 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR---TDATFIRVIGSE 278 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH---HTCEEEEEEGGG
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc---cCCCeEEEEhHH
Confidence 556789999999999988777544 366677666543
No 337
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=90.14 E-value=0.18 Score=67.91 Aligned_cols=59 Identities=24% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCC-CCCeEEEEcCCCCChhHHHHHHHHHHHhC---------CCeEEEEecChHHHHHHH
Q 000053 214 LKIIKELLCTDS-GATVQLIWGPPGTGKTKTVSMLLVILLQM---------KFRTLVCTPTIVAIKELA 272 (2576)
Q Consensus 214 ~~~i~~vl~~~~-~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~---------~~rVLv~ApTN~AVd~V~ 272 (2576)
...|+.++.... .+.-.+|++|+|||||.++..++..|+.. +.++|+++||+.-+++..
T Consensus 184 ~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 184 QIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred HHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 444555554221 12445999999999999999999888874 489999999987766554
No 338
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.12 E-value=0.29 Score=64.49 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=51.5
Q ss_pred CCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1067 PFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
++++++.|.++|.. ....+|.|+.|||||.+.+.-+... +. . ...++|
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~-----~~-~-----------------------~~~~vl 161 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYY-----LE-N-----------------------YEGKIL 161 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHH-----HH-H-----------------------CSSEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH-----Hh-C-----------------------CCCeEE
Confidence 57999999999953 3579999999999999987654311 10 0 114899
Q ss_pred EEEcCHHHHHHHHHHHHhh
Q 000053 1144 FVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l 1162 (2576)
+++.++.|+.+..+.+.++
T Consensus 162 vl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 162 IIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EEESSHHHHHHHHHHHHHT
T ss_pred EEECcHHHHHHHHHHHHHh
Confidence 9999999999998877655
No 339
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.12 E-value=1.3 Score=47.33 Aligned_cols=86 Identities=14% Similarity=-0.010 Sum_probs=47.3
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
..++..|+|+.|.++|+++-...-. + ...+...|..|...|++++|.++|.+
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~~~------------------~----~~~~~~~a~~~~~~~~~~~A~~~~~~------ 72 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELNPS------------------N----AIYYGNRSLAYLRTECYGYALGDATR------ 72 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT------------------C----HHHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC------------------C----hHHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence 3388899999999999976432100 0 11234445555555666555554432
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.++...|++++|.+.|.+
T Consensus 73 a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 73 AIELDK--KYIKGYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 222211 1123345566666666666666666655
No 340
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.97 E-value=0.19 Score=66.49 Aligned_cols=35 Identities=26% Similarity=0.535 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
...-||+||||||||+++..+...+ +..++.+..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 4688999999999999998887665 7777766544
No 341
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.92 E-value=0.34 Score=61.76 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHH-HHHHHHHhCC--------------------CeEEEEecChHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVS-MLLVILLQMK--------------------FRTLVCTPTIVAIKELA 272 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs-~Ll~~Ll~~~--------------------~rVLv~ApTN~AVd~V~ 272 (2576)
...+..++. +.-.+|.+|+|||||.+.. .++..+...+ .++|+++||..-+.++.
T Consensus 43 ~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 118 (417)
T 2i4i_A 43 KHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 118 (417)
T ss_dssp HHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHH
Confidence 344554543 2357999999999998654 4444444322 57999999999999999
Q ss_pred HHHHHHH
Q 000053 273 SRVVKLV 279 (2576)
Q Consensus 273 ~RL~~lv 279 (2576)
+++.++.
T Consensus 119 ~~~~~~~ 125 (417)
T 2i4i_A 119 EEARKFS 125 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 342
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=89.92 E-value=0.41 Score=68.79 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=47.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
+.-.+|.||.|+|||.+....+...+..+.++|+++||...+.++..++.+..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 34679999999999999888888888899999999999999999999988653
No 343
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.91 E-value=0.82 Score=55.29 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHHHHhhcHHHHHHHHHHc
Q 000053 1695 LWLFYEQNYEMATICFEKA 1713 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ra 1713 (2576)
..+...|++++|..+|+++
T Consensus 125 ~~~~~~g~~~~A~~~~~~a 143 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDA 143 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 3388899999999999975
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.91 E-value=0.12 Score=62.52 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLV 249 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~ 249 (2576)
.++.||||||||+++.++.-
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999887643
No 345
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.90 E-value=0.39 Score=61.12 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
..--||+||||||||+++..+... .+..++.+..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~ 183 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAAS 183 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHH
Confidence 456799999999999998877433 467777666644
No 346
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.85 E-value=0.65 Score=54.76 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHhhcHHHHHHHHHHcC
Q 000053 1694 CLWLFYEQNYEMATICFEKAK 1714 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~rag 1714 (2576)
|..++..|+|++|..+|+++-
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHH
Confidence 344888999999999999854
No 347
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.82 E-value=0.33 Score=67.00 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=50.4
Q ss_pred CCCHHHHHhhcC----CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEE
Q 000053 1069 EVTDEQLDMILF----PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLF 1144 (2576)
Q Consensus 1069 ~Lt~EQ~~iI~~----~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~ 1144 (2576)
.+++-|.+++.. ..+++|.|+.|||||++...-++.. +.. ...++++
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~-----~~~------------------------~~~~~l~ 73 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR-----ILT------------------------QGGKAVY 73 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHH-----HHH------------------------HCSEEEE
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHH-----HHh------------------------CCCEEEE
Confidence 689999999964 4589999999999999987666421 100 1268999
Q ss_pred EEcCHHHHHHHHHHHHhh
Q 000053 1145 VTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1145 vTfS~~la~eik~ri~~l 1162 (2576)
++.++.||.++.+++.++
T Consensus 74 i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 74 IVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp ECSSGGGHHHHHHHTGGG
T ss_pred EcCcHHHHHHHHHHHHHH
Confidence 999999999998877544
No 348
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=89.80 E-value=0.31 Score=69.40 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
...|..++. +.-.+|.||.|+|||.+....+..++..+.++|+++||...+.++.+++.+.
T Consensus 45 ~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 45 KEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp HHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred HHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 345555554 3468999999999999887777788888999999999999999999888743
No 349
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.77 E-value=0.31 Score=54.97 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ 261 (2576)
+-+|.||||+||||++..|...|-..|..+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 458999999999999998888777677776666
No 350
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.54 E-value=0.096 Score=65.34 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
--||+||||||||+++..+...+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 38999999999999988776644
No 351
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.53 E-value=0.22 Score=62.28 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=40.3
Q ss_pred HHHHHHHHh-cCCCCCeEEEEcCCCCChhHHHHHHHHHHHh------CCCeEEEEecChH
Q 000053 214 LKIIKELLC-TDSGATVQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTPTIV 266 (2576)
Q Consensus 214 ~~~i~~vl~-~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~------~~~rVLv~ApTN~ 266 (2576)
+.-++.+|. --....+.+|.||||+|||+++..++..... .+.+++.++..+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 445666774 3344789999999999999999998877544 4778888877663
No 352
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.48 E-value=5.2 Score=49.11 Aligned_cols=123 Identities=7% Similarity=-0.082 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHc-CChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1691 IFVCLWLFYEQNYEMATICFEKA-KDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDM 1769 (2576)
Q Consensus 1691 ~~~~~~l~~~~~ye~A~k~f~ra-gd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~ka 1769 (2576)
+++|..++..|++++|.+++.+. +.... ......+..++++|.+.|+.+.|.+.+.++
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~---------------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA---------------------EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS---------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC---------------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 46677799999999999999976 21100 011223467788888888888888777653
Q ss_pred CCHHHHHHHHHHhCCchHHHHHHHH--HHH--cCCHHHHHHHHHHc-CCH------HHHHHHHHcCCCHHHHHHHHHhhh
Q 000053 1770 GEYERAGTIYLERCEEPELEKAGEC--FSL--AGCYKLAADVYARG-SFL------AECLDVCSKGKLFDIGLQYISYWK 1838 (2576)
Q Consensus 1770 g~~~~A~ely~~~~~~~~~~~aAe~--~e~--~g~~~eAAelY~ka-gd~------~kAi~~y~k~k~fd~A~~l~r~~~ 1838 (2576)
...+.-. +.- +...+...|+. ... .+.+.+|..+|.++ ..+ .-.+.++.+.|.|++|-+.++++.
T Consensus 163 ~~~~~d~-~~~---~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNAIEDT-VSG---DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHSCHH-HHH---HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCccc-ccc---chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222100 000 01223334433 222 33899998888872 222 234557778899999999988543
No 353
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=89.47 E-value=0.48 Score=63.19 Aligned_cols=88 Identities=15% Similarity=0.238 Sum_probs=59.2
Q ss_pred ccCHHHHHhhcccccccccCCCCCCCHHHHHhhc-----CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccC
Q 000053 1046 SLSLGVVRHLLSDRDARELDLPFEVTDEQLDMIL-----FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVN 1120 (2576)
Q Consensus 1046 ~~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~-----~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~ 1120 (2576)
.+++.+...+... +. -.+++-|.++|. ...+++|.|+.|||||.+.+.-++........
T Consensus 78 ~l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~--------- 141 (563)
T 3i5x_A 78 VLDKEIHKAITRM--EF-----PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF--------- 141 (563)
T ss_dssp SSCHHHHHHHHTT--CC-----SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT---------
T ss_pred CCCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc---------
Confidence 3666666666432 11 348999999993 23489999999999999866555421111000
Q ss_pred CCcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1121 NSSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
......++|+++.++.||.++.+.+.++.
T Consensus 142 --------------~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 142 --------------DSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp --------------SSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------------cccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 01123689999999999999988887763
No 354
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.42 E-value=0.86 Score=59.77 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=61.3
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
+-.+|+|++|..+|+++-... .+.+....|..+ ..+...|..|...|+|++|..+|. +|.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~-------------~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~------~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQ-------------EPVFADTNLYVL-RLLSIASEVLSYLQAYEEASHYAR------RMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHH-------------TTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHH------HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHH-------------HHhcCCCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHH------HHH
Confidence 567999999999998654321 112233344433 346788999999999999998775 577
Q ss_pred HHHHHhCCch------HHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEEP------ELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~~------~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+++.+.-+.. .+...|..|...|+|++|..+|++
T Consensus 379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7877764332 245566666666666666555544
No 355
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.41 E-value=1.3 Score=48.81 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=17.5
Q ss_pred HHHHHHhhcHHHHHHHHHHcCC
Q 000053 1694 CLWLFYEQNYEMATICFEKAKD 1715 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd 1715 (2576)
|..++..|+|++|..+|+++-.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~ 34 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD 34 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4448889999999999997654
No 356
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.39 E-value=0.3 Score=55.21 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.+-+|.||||+||||++..+...|-..|.++.++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 557889999999999999998888877888876653
No 357
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.36 E-value=0.13 Score=67.36 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHH
Q 000053 211 KGNLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLV 249 (2576)
Q Consensus 211 ~~~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~ 249 (2576)
.|.-.+++.++.......--|+.||||||||+++..+..
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 567778877776655566789999999999998877744
No 358
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=89.35 E-value=6.1 Score=45.38 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1788 LEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1788 ~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+...|.++.+.|+|.+|.+.|.+
T Consensus 44 ~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 44 QLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 44556666667777777666655
No 359
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=89.34 E-value=2.5 Score=46.60 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 000053 1747 REAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGS 1812 (2576)
Q Consensus 1747 ~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kag 1812 (2576)
.+.|..+...|++++|..+|.++= ++.. .....+...|.++...|++++|.++|.++-
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al------~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLS------DELQ--SRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC------HHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH------HHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 445556666666666666555432 1111 122345667777788888888888877753
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.32 E-value=0.31 Score=55.29 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.4
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE-ecChHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC-TPTIVAI 268 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~-ApTN~AV 268 (2576)
+-.|.||||+||||++..|...|-..|..++.+ .|....+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~ 42 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTET 42 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcH
Confidence 357899999999999999888887778877644 3444443
No 361
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.17 E-value=18 Score=44.25 Aligned_cols=162 Identities=11% Similarity=0.010 Sum_probs=104.4
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHc
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKC-------FFDM 1769 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~-------y~ka 1769 (2576)
....|+|-+|...|+-. .++.+...+-.++...+...|..+.+.|++.-|+++ |.++
T Consensus 23 ~I~~G~yYEAhQ~~Rtl----------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~ 86 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTI----------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA 86 (312)
T ss_dssp HHHHTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhhccChHHHHHHHHHH----------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 55678888888877721 122233335566777788888888888988877654 5554
Q ss_pred CCH------HHHHHHHHHhC--Cc---hHHHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHHcCC--CHH
Q 000053 1770 GEY------ERAGTIYLERC--EE---PELEKAGECFSLAGC--------YKLAADVYARGSFLAECLDVCSKGK--LFD 1828 (2576)
Q Consensus 1770 g~~------~~A~ely~~~~--~~---~~~~~aAe~~e~~g~--------~~eAAelY~kagd~~kAi~~y~k~k--~fd 1828 (2576)
+.. ++.++++..-. +. ..+.+|..|-.+.|. +...|+.|.+.|++.+|-..+.-+. .-+
T Consensus 87 ~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~ 166 (312)
T 2wpv_A 87 EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMI 166 (312)
T ss_dssp TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHH
Confidence 432 34455544321 11 346788888877644 7788999999999999999887554 355
Q ss_pred HHHHHHHhhhhcCCcccccccchHHHHHHhHH-hHHHHHHHHHHcCChHHHHHHHHH
Q 000053 1829 IGLQYISYWKQHADTDVGRVKSSKEMKKIEQD-FLQSCALHFHKLNDNKSMMKFVRA 1884 (2576)
Q Consensus 1829 ~A~~l~r~~~~~~~~~~~~~~~s~~~~~~e~~-~le~~a~~f~klgd~~~A~~~~k~ 1884 (2576)
...+++-.|.+..++. +..+.+ |+..+...|.-+++.+.|.+++..
T Consensus 167 ~~a~~l~~w~~~~~~~----------~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~ 213 (312)
T 2wpv_A 167 KYVDLLWDWLCQVDDI----------EDSTVAEFFSRLVFNYLFISNISFAHESKDI 213 (312)
T ss_dssp HHHHHHHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC----------CcchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5666666665431111 112223 677788888889999988776653
No 362
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.16 E-value=0.25 Score=58.91 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
..+.++.|+||+||||++..+...|. .|++|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 56899999999999999999999999 999999886
No 363
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.10 E-value=0.24 Score=58.13 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHh-cCCCCCeEEEEcCCCCChhHHHHHHHHHHHh------CCCeEEEEecCh
Q 000053 215 KIIKELLC-TDSGATVQLIWGPPGTGKTKTVSMLLVILLQ------MKFRTLVCTPTI 265 (2576)
Q Consensus 215 ~~i~~vl~-~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~------~~~rVLv~ApTN 265 (2576)
+-++.+|. --....+.+|.||||+|||+++..++...+. .+.+++.++..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34555553 2234789999999999999999998876433 245666665543
No 364
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.10 E-value=0.51 Score=60.91 Aligned_cols=94 Identities=10% Similarity=-0.053 Sum_probs=60.7
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
....|+|++|..+|+++-... .+.+...+|..+ ..+...|..|...|+|++|..+|.+ |.
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~-------------~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~------aL 367 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKM-------------SSVFEDSNVYML-HMMYQAMGVCLYMQDWEGALKYGQK------II 367 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHH-------------TTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred hhhccCHHHHHHHHHHHHHHh-------------hCccChhchHHH-HHHHHHHHHHHhhcCHHHHHHHHHH------HH
Confidence 334688999999998653321 112333344433 3467889999999999999977664 67
Q ss_pred HHHHHhCCc------hHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEE------PELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~------~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+++.+.-+. ..+...|..|...|+|++|..+|++
T Consensus 368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 777766332 2355666666666666666666554
No 365
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.09 E-value=0.2 Score=62.54 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhcC----CCCCeEEEEcCCCCChhHHHHHHHHHHH
Q 000053 212 GNLKIIKELLCTD----SGATVQLIWGPPGTGKTKTVSMLLVILL 252 (2576)
Q Consensus 212 ~~~~~i~~vl~~~----~~~~v~LIwGPPGTGKTktIs~Ll~~Ll 252 (2576)
++-.+++.+.... ..+. -+|+||||||||+++..+...+.
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHc
Confidence 4555555444322 2344 89999999999999887765553
No 366
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.08 E-value=0.53 Score=49.09 Aligned_cols=84 Identities=12% Similarity=-0.014 Sum_probs=55.9
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
++..|+|++|..+|+++-.. +|... ..+...|..+...|++++|+.+|. +|.
T Consensus 27 ~~~~g~~~~A~~~~~~al~~---------------------~P~~~-~a~~~lg~~~~~~g~~~~A~~~~~------~al 78 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQK---------------------EPERE-EAWRSLGLTQAENEKDGLAIIALN------HAR 78 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------STTCH-HHHHHHHHHHHHTTCHHHHHHHHH------HHH
T ss_pred HHHcCCHHHHHHHHHHHHHH---------------------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHH------HHH
Confidence 88899999999999965321 12111 134567788888899999987765 455
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
++-.. ....+...|.++...|++++|.+.|.+
T Consensus 79 ~l~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 79 MLDPK--DIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54211 123456677777777777777777765
No 367
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=89.05 E-value=0.42 Score=63.58 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
...++..|...-......+|+.|+|||||-+ .++-. +..+.+|++++||+.-.+++...+.
T Consensus 12 Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~--~l~~~-~~~~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 12 QAEKLGEAINALKHGKTLLLNAKPGLGKTVF--VEVLG-MQLKKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSCHHHH--HHHHH-HHHTCEEEEEESCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcHHHH--HHHHH-HhCCCcEEEEcCCHHHHHHHHHHHH
Confidence 4556666665544566899999999999943 34333 4458899999999998888875544
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.02 E-value=0.32 Score=58.35 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=29.3
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
.+-+|.||||+||||++..|...|-..|..+++++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46789999999999999998888777888877554
No 369
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.99 E-value=0.63 Score=62.45 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-------CCeEEEEecChHHHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-------KFRTLVCTPTIVAIKELASRVVKLVK 280 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-------~~rVLv~ApTN~AVd~V~~RL~~lv~ 280 (2576)
....|..++.. .+.-.+|.+|.|||||.+....+...+.. +.++|+++||..-+.++.+++.++..
T Consensus 48 Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 48 QQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp HHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 34556666632 24567999999999998766544444433 34899999999999999999988753
No 370
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.97 E-value=2.5 Score=55.43 Aligned_cols=57 Identities=18% Similarity=0.041 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCc------hHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1748 EAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEE------PELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1748 eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~------~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+.++.+...|+|++|..+|. +|.++..+..+. ..+...|..|...|+|++|..+|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~------~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCR------ECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHH------HHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33445667788888887654 455555444222 2345666666666666666666653
No 371
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.89 E-value=0.16 Score=61.42 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
.+|+||||||||+++..+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 799999999999998877544
No 372
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=88.88 E-value=0.57 Score=57.44 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred CeEEEEcCCCCChhHHHH-HHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVS-MLLVILLQM--KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs-~Ll~~Ll~~--~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
.-.++++|+|||||.+.. .++..+... +.++|+++||..-+.++...+.++.
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 468999999999998754 333333332 3479999999999999888877653
No 373
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.86 E-value=0.32 Score=57.34 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHH-hCCCeEEEEecC
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPT 264 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll-~~~~rVLv~ApT 264 (2576)
...+..|.||||+||||++..++...+ ..+.++++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 377999999999999999998876555 556666555543
No 374
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=88.86 E-value=0.41 Score=64.56 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=41.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
.+...+++||.|||||..+. ..++..+.++|+++||...+.++.+++.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~---l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVP---AAYAAQGYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHH---HHHHHTTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHH---HHHHHCCCeEEEEcchHHHHHHHHHHHHHHh
Confidence 36789999999999996544 3455678899999999999999999877553
No 375
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.81 E-value=0.46 Score=63.37 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCC-------CeEEEEecChHHHHHHHHHHHHHHHh
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK-------FRTLVCTPTIVAIKELASRVVKLVKE 281 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~-------~rVLv~ApTN~AVd~V~~RL~~lv~e 281 (2576)
...|..++.. .+.-.+|.+|.|||||.+....+...+..+ .++|+++||..-+.++.+++.++...
T Consensus 100 ~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 100 QKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp HHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 4556666632 245679999999999987665444444332 48999999999999999999887543
No 376
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=88.79 E-value=0.49 Score=67.37 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .-.+|.+|.|+|||.+....+...+..+.++|+++||..-+.+...++.+..
T Consensus 92 ~eai~~l~~g----~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 92 DTAISCIDRG----ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp HHHHHHHHHT----CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHh
Confidence 3445554442 3589999999999999877777777889999999999999999988887654
No 377
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.70 E-value=0.59 Score=62.71 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=58.4
Q ss_pred cCHHHHHhhcccccccccCCCCCCCHHHHHhhcC-----CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCC
Q 000053 1047 LSLGVVRHLLSDRDARELDLPFEVTDEQLDMILF-----PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121 (2576)
Q Consensus 1047 ~s~~~~~~ll~~~~~~~~d~~f~Lt~EQ~~iI~~-----~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~ 1121 (2576)
+++.+...+... +. -.++|-|.++|.. ..+++|.|+.|||||.+.+.-++........
T Consensus 28 l~~~l~~~l~~~--g~-----~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~---------- 90 (579)
T 3sqw_A 28 LDKEIHKAITRM--EF-----PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF---------- 90 (579)
T ss_dssp SCHHHHHHHHTT--TC-----SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----------
T ss_pred CCHHHHHHHHHC--CC-----CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----------
Confidence 566666666432 11 2489999999932 3379999999999999866555321110000
Q ss_pred CcchhhhhhhhhhhhcccccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1122 SSQETEAEKDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
......++|+++.++.||.++.+.+.++.
T Consensus 91 -------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 91 -------------DSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp -------------SSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred -------------cccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 01123689999999999999988887763
No 378
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=88.61 E-value=0.35 Score=63.16 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCC---CeEEEEecChHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK---FRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~---~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...+..++.. .+.-.++.||.|||||.+....+...+..+ .++|+++||..-+.++..++.++.
T Consensus 120 ~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 120 ENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp HHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHH
Confidence 3444455543 246789999999999988654444434332 389999999999999988887664
No 379
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.46 E-value=3.8 Score=54.38 Aligned_cols=19 Identities=0% Similarity=-0.069 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHH
Q 000053 1865 CALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1865 ~a~~f~klgd~~~A~~~~k 1883 (2576)
.+..|.+.|++++|++.++
T Consensus 97 la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3445666777777766554
No 380
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=88.43 E-value=2 Score=43.48 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=49.5
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYE 1773 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~ 1773 (2576)
|..++..++|+.|..+|+++-... |.. ...+...|..|...|++++|.++|.++
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~---- 72 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELN---------------------PAN-AVYFCNRAAAYSKLGNYAGAVQDCERA---- 72 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHHccCHHHHHHHHHHHHHcC---------------------CCC-HHHHHHHHHHHHHhhchHHHHHHHHHH----
Confidence 444888999999999999754310 100 113456677777788888887766542
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1774 RAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1774 ~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
.++.. .....+...|.++...|++++|.+.|.+
T Consensus 73 --~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 73 --ICIDP--AYSKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp --HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HhcCc--cCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22211 1123344555555555555555555443
No 381
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.39 E-value=2 Score=57.03 Aligned_cols=111 Identities=13% Similarity=0.004 Sum_probs=70.2
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
+...|+|++|..+|+++-... |.. ...+...|..|...|++++|.++|.+ |.
T Consensus 33 ~~~~g~~~~A~~~~~~al~~~---------------------p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~------al 84 (568)
T 2vsy_A 33 ELGMGDTTAGEMAVQRGLALH---------------------PGH-PEAVARLGRVRWTQQRHAEAAVLLQQ------AS 84 (568)
T ss_dssp HHHHTCHHHHHHHHHHHHTTS---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHH------HH
Confidence 778999999999999765421 110 11245566677777777777766544 33
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHHHHHHcC---CCHHHHHHHHHhh
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECLDVCSKG---KLFDIGLQYISYW 1837 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi~~y~k~---k~fd~A~~l~r~~ 1837 (2576)
++.. .....+...|.++.+.|++++|.+.|.++-. +.....+|.+. +.+++|.+.+++.
T Consensus 85 ~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 85 DAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3311 1234566778888888888888888877421 12233355566 7788888877743
No 382
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=88.36 E-value=0.86 Score=51.32 Aligned_cols=100 Identities=13% Similarity=-0.016 Sum_probs=52.0
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHH--HHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGR--SKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l--~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
..++..++|++|..+|.++-...-... ... .+.... .......+...|..|...|++++|..+|.+
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~---- 113 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKK-------KNIEISCNLNLATCYNKNKDYPKAIDHASK---- 113 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHH-------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----
Confidence 338889999999999998643110000 000 000000 000123456667777777777777766543
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.++...|+|++|.+.|.+
T Consensus 114 --al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 114 --VLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp --HHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --HHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 333311 1123445556666666666666665544
No 383
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.35 E-value=0.35 Score=66.51 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEE
Q 000053 1069 EVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFV 1145 (2576)
Q Consensus 1069 ~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~v 1145 (2576)
.+++-|.+++.. ..+++|.|+.|||||++...-++.. +. ...+++++
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~-----~~-------------------------~~~~~l~i 74 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE-----AI-------------------------KGGKSLYV 74 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHH-----HH-------------------------TTCCEEEE
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHH-----HH-------------------------hCCcEEEE
Confidence 688999999843 5689999999999999987766421 10 02689999
Q ss_pred EcCHHHHHHHHHHHHhh
Q 000053 1146 TVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1146 TfS~~la~eik~ri~~l 1162 (2576)
+.++.||.++.+++.++
T Consensus 75 ~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 75 VPLRALAGEKYESFKKW 91 (702)
T ss_dssp ESSHHHHHHHHHHHTTT
T ss_pred eCcHHHHHHHHHHHHHH
Confidence 99999999998877433
No 384
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=88.30 E-value=0.4 Score=54.82 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||+|+|||+-+...+......+.+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 66999999999999999999999999999999999875
No 385
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=88.30 E-value=0.33 Score=66.56 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=50.7
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCC------CeEEEEecChHHHHHH-HHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK------FRTLVCTPTIVAIKEL-ASRVVKLV 279 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~------~rVLv~ApTN~AVd~V-~~RL~~lv 279 (2576)
....++.++.. .-.+|++|.|+|||.+....+..++..+ .++|+++||..-+.+. .+++.+..
T Consensus 12 Q~~~i~~il~g----~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 12 QMEVAQPALEG----KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp HHHHHHHHHSS----CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhC----CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 34566777662 3489999999999999988887776543 8999999999988888 88887764
No 386
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.26 E-value=0.55 Score=65.56 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHHH
Q 000053 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTIVAIKELASRVVKLVK 280 (2576)
Q Consensus 214 ~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-----~~rVLv~ApTN~AVd~V~~RL~~lv~ 280 (2576)
...|..++.. .-.+|.+|.|+|||-+....+..++.. +.++|+++||..-+.++.+++.+...
T Consensus 254 ~~~i~~~l~~----~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 254 IELAQPAING----KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp HHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhC----CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3455555543 247999999999999988777777765 78999999999999999999887763
No 387
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.21 E-value=0.43 Score=53.79 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
.+..|.||+|+||||++..++..+-..+.++-++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 578999999999999999999888777877655544
No 388
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=88.15 E-value=3.5 Score=54.18 Aligned_cols=58 Identities=10% Similarity=-0.075 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCc-hHHHHHHHHHHHcCCHHHHHHHHHHc
Q 000053 1746 LREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEE-PELEKAGECFSLAGCYKLAADVYARG 1811 (2576)
Q Consensus 1746 ~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~-~~~~~aAe~~e~~g~~~eAAelY~ka 1811 (2576)
+...+.++++.|++++|..+|.++ .++-. .+. ..|...+.++.+.|.+++|.++|.++
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~a------l~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRL------LAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------HHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH------hCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456667777778888887776642 22100 011 24556666666666777777766664
No 389
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.03 E-value=0.33 Score=72.22 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIV 266 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~ 266 (2576)
.++.+|.||||||||+++.+++....+.|.+++..+..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 7799999999999999999999999999999999987654
No 390
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.01 E-value=0.42 Score=68.73 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=44.2
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~l 278 (2576)
.-.+|++|+|||||.+....+..++..+.++|+++||..-+.++.+++.++
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 347999999999999776766777788999999999999999999998763
No 391
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.87 E-value=0.63 Score=67.27 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=52.0
Q ss_pred CCCCCCCHHHHHhhcC-------CC--CEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhh
Q 000053 1065 DLPFEVTDEQLDMILF-------PR--STFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKT 1135 (2576)
Q Consensus 1065 d~~f~Lt~EQ~~iI~~-------~~--~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~ 1135 (2576)
.++|++|+.|.++|.. .. +.+|.|+.|||||.+++.-++.. ..
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~------~~---------------------- 650 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA------VD---------------------- 650 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH------HT----------------------
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH------HH----------------------
Confidence 4789999999999931 22 68999999999999977655321 11
Q ss_pred hcccccEEEEEcCHHHHHHHHHHHHhh
Q 000053 1136 ERVILRQLFVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1136 ~~~~~riL~vTfS~~la~eik~ri~~l 1162 (2576)
...++++++.|+.||.+..+.+.+.
T Consensus 651 --~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 651 --NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp --TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred --hCCeEEEEechHHHHHHHHHHHHHH
Confidence 1158899999999999988877654
No 392
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.86 E-value=0.44 Score=53.79 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=26.7
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ 261 (2576)
+-.|.||||+||||++..+...|-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999988877776667777654
No 393
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.83 E-value=0.34 Score=59.04 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+.+-+|.||||+||||++..+...+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998876543
No 394
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.80 E-value=0.34 Score=53.43 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=21.9
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEE
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 260 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv 260 (2576)
+-+|.||||+||||++..| -..|..++-
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEEE
Confidence 5689999999999988877 345766554
No 395
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=87.57 E-value=0.58 Score=63.61 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
+...+|.||+|+|||. .++..+... .+.++++||-..+.++.+++.+
T Consensus 155 rk~vlv~apTGSGKT~---~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTY---HAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp CEEEEEECCTTSSHHH---HHHHHHHHS-SSEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHH---HHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHh
Confidence 5688999999999998 333344444 4569999999999999999754
No 396
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.53 E-value=0.31 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhHHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+-+|.||||+||||++..|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999888765443
No 397
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.53 E-value=0.87 Score=46.82 Aligned_cols=92 Identities=17% Similarity=0.067 Sum_probs=49.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..++..|+|++|..+|+++-... ..++. ....+...|..|...|++++|..+|.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~---- 64 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY------------------PNGVY-TPNALYWLGESYYATRNFQLAEAQFRD---- 64 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------------------SSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC------------------CCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHH----
Confidence 4555888999999999998643210 01111 012345566777777888887766654
Q ss_pred HHHHHHHHHhCC-chHHHHHHHHHHHcCCHHHHHHHHH
Q 000053 1773 ERAGTIYLERCE-EPELEKAGECFSLAGCYKLAADVYA 1809 (2576)
Q Consensus 1773 ~~A~ely~~~~~-~~~~~~aAe~~e~~g~~~eAAelY~ 1809 (2576)
+.+.+..... ...+...|.++...|++++|.+.|.
T Consensus 65 --~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 65 --LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp --HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2322111000 1223445555555555555555544
No 398
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.52 E-value=0.34 Score=59.96 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=40.5
Q ss_pred HHHHHHHHh-cCCCCCeEEEEcCCCCChhHHHHHHHHHHH------------hCC----CeEEEEecChHH-HHHHHHH
Q 000053 214 LKIIKELLC-TDSGATVQLIWGPPGTGKTKTVSMLLVILL------------QMK----FRTLVCTPTIVA-IKELASR 274 (2576)
Q Consensus 214 ~~~i~~vl~-~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll------------~~~----~rVLv~ApTN~A-Vd~V~~R 274 (2576)
++-++.+|. --...++.+|.||||+|||+++..++.... ..| .+++.++.-+.. ...+..+
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 344555553 222378999999999999999999887642 224 688888766542 3444443
No 399
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.51 E-value=0.37 Score=61.38 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCeEEE--EcCCCCChhHHHHHHHHHHHh
Q 000053 226 GATVQLI--WGPPGTGKTKTVSMLLVILLQ 253 (2576)
Q Consensus 226 ~~~v~LI--wGPPGTGKTktIs~Ll~~Ll~ 253 (2576)
.+...+| +||||||||+++..+...+-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4668899 999999999999988877655
No 400
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.37 E-value=0.72 Score=53.66 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE-ecChHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC-TPTIVAI 268 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~-ApTN~AV 268 (2576)
.+-+|-||||+||||.+..+...|-..|.+|.++ -|+.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~ 48 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPL 48 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 4678899999999999999998888888877655 4555544
No 401
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.37 E-value=0.55 Score=66.00 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=34.4
Q ss_pred CCHHHHHHHHh---cCCCCCeEEEEcCCCCChhHHHHHHHHHHHh-------CCCeEEEEec
Q 000053 212 GNLKIIKELLC---TDSGATVQLIWGPPGTGKTKTVSMLLVILLQ-------MKFRTLVCTP 263 (2576)
Q Consensus 212 ~~~~~i~~vl~---~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~-------~~~rVLv~Ap 263 (2576)
+.-..++.+++ ....+++ +++||||||||+++-.+...+.. .+.+++.+..
T Consensus 174 Gr~~~i~~l~~~l~~~~~~~v-lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRTKNNP-VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp SCHHHHHHHHHHHHCSSCCCC-EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CcHHHHHHHHHHHhcCCCCce-EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 44455555443 3333444 89999999999999888877765 3666666544
No 402
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.34 E-value=2.6 Score=42.17 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYER 1774 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~ 1774 (2576)
..+...++|++|.++|+++-... |.. ...+...|..|...|++++|..+|.++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~----- 69 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD---------------------PNN-AEAWYNLGNAYYKQGDYDEAIEYYQKA----- 69 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC---------------------cCc-HHHHHHHHHHHHHhCCHHHHHHHHHHH-----
Confidence 33788999999999999753210 100 113455667777778888887666542
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1775 AGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1775 A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
.++.. .....+...|.++...|++++|.+.|.+
T Consensus 70 -~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 70 -LELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp -HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 22211 1122344455555555555555555443
No 403
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.31 E-value=0.52 Score=53.97 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
..+.-+|.++||+||||.+..+....+..|.||+++..-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 3678899999999999999999999999999999997654
No 404
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.29 E-value=0.28 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.+-+|.||||+||||++..|...|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999988775543
No 405
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.09 E-value=6 Score=47.43 Aligned_cols=22 Identities=9% Similarity=-0.150 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 000053 1862 LQSCALHFHKLNDNKSMMKFVR 1883 (2576)
Q Consensus 1862 le~~a~~f~klgd~~~A~~~~k 1883 (2576)
+...+..|.+.|++..|.+++.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3445556677788887777554
No 406
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.03 E-value=0.29 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCChhHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLV 249 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~ 249 (2576)
.+-+|.||||+||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4678999999999999887755
No 407
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=87.01 E-value=0.53 Score=64.53 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHhhcC---CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccE
Q 000053 1066 LPFEVTDEQLDMILF---PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142 (2576)
Q Consensus 1066 ~~f~Lt~EQ~~iI~~---~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~ri 1142 (2576)
.++.|++-|.++|.. ..+++|.|+.|||||.+...-++...... .......++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------------~~~~~~~~v 59 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKK------------------------KKASEPGKV 59 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHH------------------------HHHTCCCCB
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhc------------------------cccCCCCeE
Confidence 458999999999943 45899999999999999877664221110 011223689
Q ss_pred EEEEcCHHHHHHH-HHHHHhhh
Q 000053 1143 LFVTVSPKLCFAV-KQHISHMK 1163 (2576)
Q Consensus 1143 L~vTfS~~la~ei-k~ri~~l~ 1163 (2576)
|+++.++.|+.+. .+.+.++.
T Consensus 60 lvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 60 IVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCEESCSHHHHHHHHHTHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHc
Confidence 9999999999988 88777654
No 408
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.99 E-value=0.32 Score=63.73 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.--||+||||||||+++-++... .+..++.+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~---~~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE---TGAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH---CSSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH---hCCCEEEEE
Confidence 456899999999999998877443 366666554
No 409
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.97 E-value=0.47 Score=63.80 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.++.|.+|+|||++.+++...+...|+|||++..-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 56889999999999999999999999999999998754
No 410
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=86.90 E-value=0.94 Score=58.33 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCCCHHHHHhhcC--CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEE
Q 000053 1068 FEVTDEQLDMILF--PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFV 1145 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~~--~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~v 1145 (2576)
+.|.+-|.+++.. .++++|.++.|+|||.+++.-+..... ....++|+|
T Consensus 8 ~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~-----------------------------~~~~~~liv 58 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT-----------------------------KYGGKVLML 58 (494)
T ss_dssp HCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH-----------------------------HSCSCEEEE
T ss_pred CCccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHh-----------------------------cCCCeEEEE
Confidence 6799999999942 348999999999999998887742210 123689999
Q ss_pred EcCHHHHHHHHHHHHhhh
Q 000053 1146 TVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1146 TfS~~la~eik~ri~~l~ 1163 (2576)
+.++.++.+..+.+.+..
T Consensus 59 ~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 59 APTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CSSHHHHHHHHHHHHHHB
T ss_pred ECCHHHHHHHHHHHHHHh
Confidence 999999999988887663
No 411
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=86.89 E-value=0.98 Score=61.87 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=48.7
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCC-----CeEEEEecChHHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMK-----FRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~-----~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
...++..++. +.-.+|.+|.|+|||.+....+..++..+ .++|+++||..-+.+..+.+.++.
T Consensus 18 Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 18 QLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp HHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 3455666664 23589999999999998887776665432 799999999988888888887664
No 412
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=86.74 E-value=5.6 Score=52.25 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhh
Q 000053 1814 LAECLDVCSKGKLFDIGLQYISYWK 1838 (2576)
Q Consensus 1814 ~~kAi~~y~k~k~fd~A~~l~r~~~ 1838 (2576)
|...|..|.+.+.+++|.+++++..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~ 132 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMK 132 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566666777777777777766433
No 413
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.73 E-value=1.2 Score=56.17 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
++..++|++|.++|++|-...-.... .... +.. ...+|. ....+...|..|.+.|++++|+++|.+ |.
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~-~~~~-~~~---~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~~------al 300 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRA-AAED-ADG---AKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLE------AL 300 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHH-HSCH-HHH---GGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCcc-ccCh-HHH---HHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHHH------HH
Confidence 88899999999999977552111100 0000 000 001111 123455666666677777776665543 22
Q ss_pred HHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
++.. .....+...|.+|...|+|++|.+.|.+
T Consensus 301 ~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EIDP--SNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2210 1123445566666666666666665554
No 414
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.70 E-value=0.52 Score=58.54 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
..+.+..|-||+|+|||||+..+...+-..+.+|++.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34779999999999999999999888877777877664
No 415
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.68 E-value=1.4 Score=56.70 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=58.2
Q ss_pred HHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHH
Q 000053 1697 LFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAG 1776 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ 1776 (2576)
+..+|+|++|...|+++-..... .+...+|.. ...+..+|..|...|+|++|..+|. +|.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~-------------~lg~~h~~~-~~~~~~L~~~y~~~g~~~eA~~~~~------~~L 356 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSE-------------RLPDINIYQ-LKVLDCAMDACINLGLLEEALFYGT------RTM 356 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSC-------------CCCTTSHHH-HHHHHHHHHHHHHHTCHHHHHHHHH------HHH
T ss_pred HHhhccHHHHHHHHHHHHHhccC-------------cCCccchHH-HHHHHHHHHHHHhhccHHHHHHHHH------HHH
Confidence 55689999999999976432111 111222322 2346778888999999999997765 567
Q ss_pred HHHHHhCCc------hHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1777 TIYLERCEE------PELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1777 ely~~~~~~------~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
++|...-+. ..+...|..|...|+|++|..+|.+
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 777765333 2244555555556665555555544
No 416
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=86.58 E-value=3.3 Score=52.46 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=12.3
Q ss_pred HHHhhcHHHHHHHHHHc
Q 000053 1697 LFYEQNYEMATICFEKA 1713 (2576)
Q Consensus 1697 l~~~~~ye~A~k~f~ra 1713 (2576)
+...++|++|.++|+++
T Consensus 107 ~~~~g~~~~Al~~~~~a 123 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDA 123 (382)
T ss_dssp HHHTCCCHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHH
Confidence 66677777777777764
No 417
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.56 E-value=0.3 Score=63.64 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=23.9
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
.=-+|+||||||||+++..+...+ +...+.++.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~ 82 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISG 82 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH
Confidence 347899999999999988776543 555555543
No 418
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.55 E-value=0.39 Score=54.07 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCC
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMK 255 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~ 255 (2576)
.+-+|.||||+||||++..|...|-..|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4678999999999999888877665555
No 419
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.42 E-value=0.85 Score=52.32 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHhcC-CCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 216 IIKELLCTD-SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 216 ~i~~vl~~~-~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+++.++... ....+..|.||+|+||||++..+...+-..+..|.+..
T Consensus 10 l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 10 LCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp HHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 444455432 23568999999999999999888766655666666553
No 420
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.41 E-value=0.63 Score=53.28 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEE
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTL 259 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVL 259 (2576)
.+-+|.||||+||||++..|...|-..| .++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 3678999999999999998887765555 453
No 421
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.39 E-value=0.55 Score=67.32 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=45.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
+.-.+|.||.|||||....-++..+...+.++|+++||..-+.++.+++.++.
T Consensus 71 g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 71 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 34689999999999986666666667789999999999999999999998775
No 422
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.34 E-value=0.41 Score=53.81 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..-+|.||||+||||++..|...|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 466899999999999988876554
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.31 E-value=0.52 Score=60.45 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|.||+|+||||++..+...+...+.+|+++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4577778999999999999999999888999988764
No 424
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.31 E-value=0.6 Score=56.40 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCeEEEEcC-CCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGP-PGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGP-PGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
..+-.|.|+ ||.|||++++.|...|...|+|||++-
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 557777776 999999999999999999999999863
No 425
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=86.24 E-value=1.7 Score=57.23 Aligned_cols=134 Identities=16% Similarity=0.049 Sum_probs=87.0
Q ss_pred hhcHHHHHHHHHHcCChh-------HHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHc---C------CHHHHH
Q 000053 1700 EQNYEMATICFEKAKDTY-------WEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAI---G------KVDSAA 1763 (2576)
Q Consensus 1700 ~~~ye~A~k~f~ragd~~-------~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~---G------~~~~Aa 1763 (2576)
.|++++|.+.|.+..... +..+..++... .........+.+.+|-++|.+. | -|...+
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------EAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC------CCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC------CchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999998743211 11111111100 0000000122345555555542 2 256677
Q ss_pred HHHHHcCCHHHHHHHHHHh----C--CchHHHHHHHHHHHcCCHHHHHHHHHHc---CC------HHHHHHHHHcCCCHH
Q 000053 1764 KCFFDMGEYERAGTIYLER----C--EEPELEKAGECFSLAGCYKLAADVYARG---SF------LAECLDVCSKGKLFD 1828 (2576)
Q Consensus 1764 ~~y~kag~~~~A~ely~~~----~--~~~~~~~aAe~~e~~g~~~eAAelY~ka---gd------~~kAi~~y~k~k~fd 1828 (2576)
..|.+.|++++|.+++.+- . +..-+......|.+.|.+++|.++|.+. |- |...|..|.+.|.++
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 8888888888888887753 1 2234678888999999999999999873 22 788899999999999
Q ss_pred HHHHHHHhhhh
Q 000053 1829 IGLQYISYWKQ 1839 (2576)
Q Consensus 1829 ~A~~l~r~~~~ 1839 (2576)
+|.+++++...
T Consensus 193 ~A~~ll~~Mr~ 203 (501)
T 4g26_A 193 KVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999995443
No 426
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.24 E-value=0.7 Score=61.62 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=44.2
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVV 276 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AVd~V~~RL~ 276 (2576)
..++++.|...-....-.+|+.|+|||||-.. ++-.+. .+.++++++||..-.+++.+.+.
T Consensus 8 Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~--l~p~l~-~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 8 QEKLKDKVIEGLRNNFLVALNAPTGSGKTLFS--LLVSLE-VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSSHHHHH--HHHHHH-HCSEEEEEESSGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCccHHHHH--HHHHHh-CCCeEEEEcCCHHHHHHHHHHHH
Confidence 34556666555445668999999999996543 333333 68899999999999988875554
No 427
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.23 E-value=0.6 Score=53.66 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ 261 (2576)
+.+-+|.||||+||||++..|...|-..+..+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 45788999999999999999988877777777544
No 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.22 E-value=0.45 Score=65.99 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=26.0
Q ss_pred CCCHHHHHHHH---hcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 211 KGNLKIIKELL---CTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 211 ~~~~~~i~~vl---~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.+.-+.++.++ .....++ -|++||||||||+++-.+...+
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~-vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNN-PVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCE-EEEESCTTTTTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCC-eEEECCCCCCHHHHHHHHHHHH
Confidence 34445444443 3333344 5999999999999887775554
No 429
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.21 E-value=0.8 Score=59.11 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=41.2
Q ss_pred CeEEEEcCCCCChhHHHH-HHHHHHHhC-------CCeEEEEecChHHHHHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVS-MLLVILLQM-------KFRTLVCTPTIVAIKELASRVVKLV 279 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs-~Ll~~Ll~~-------~~rVLv~ApTN~AVd~V~~RL~~lv 279 (2576)
.-.++.+|.|||||.+.. .++..++.. +.++|+++||..-+.++.+++.++.
T Consensus 94 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 457999999999998655 455555543 4589999999999999988887663
No 430
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=86.16 E-value=0.49 Score=62.45 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=49.9
Q ss_pred CCCHHHHHhhc----C-CCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1069 EVTDEQLDMIL----F-PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1069 ~Lt~EQ~~iI~----~-~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
.+++.|.++|. . +.+++|.|+.|||||.+...-++.. +.. .....++|
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~-----l~~----------------------~~~~~~vL 193 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSR-----VDA----------------------SVPKPQAI 193 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHH-----SCT----------------------TCCSCCEE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHH-----HHh----------------------CCCCceEE
Confidence 47888988883 2 3689999999999999877666421 110 11235899
Q ss_pred EEEcCHHHHHHHHHHHHhh
Q 000053 1144 FVTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l 1162 (2576)
+++.++.|+.++.+++.++
T Consensus 194 vl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 194 CLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp EECSCHHHHHHHHHHHHHH
T ss_pred EEECcHHHHHHHHHHHHHh
Confidence 9999999999998887766
No 431
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=86.13 E-value=0.89 Score=64.70 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=49.5
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCC--eEEEEecChHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF--RTLVCTPTIVAIKELASRVVK 277 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~--rVLv~ApTN~AVd~V~~RL~~ 277 (2576)
....+..++... +.-.|+.+|.|+|||-++..++..++..|. ++|+++|| ..+.+-...+.+
T Consensus 158 Q~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 158 QLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp HHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 455677777654 456799999999999999999999998776 99999999 666776666653
No 432
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.12 E-value=0.59 Score=57.23 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|.||+|+||||++..+...+...+.+|++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4566677999999999999999888888889888764
No 433
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.05 E-value=0.83 Score=57.08 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 216 IIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 216 ~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+++.+........+..|.||||.||||++..++..+...+.+|.+++.
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 333443334446677889999999999999999888888888877764
No 434
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.05 E-value=0.63 Score=53.94 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecCh
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN 265 (2576)
...+.+|.||.|+|||+.+..++..+...+.++++..|.-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 3679999999999999988888888888999999999863
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.04 E-value=0.62 Score=58.91 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHH
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
.+++.+-.....+.+.+|.|||||||||++..+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 334444444455779999999999999999877653
No 436
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.94 E-value=0.38 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+.+-+|.||||+||||++..|...|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4577899999999999998876655
No 437
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.75 E-value=1.6 Score=54.04 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 211 KGNLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 211 ~~~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.+.-..++.+.. -.. ++.+|+||||+|||+++..+...+
T Consensus 16 ~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 16 FDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 345455555544 332 699999999999999999887664
No 438
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.72 E-value=0.48 Score=65.72 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.1
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
.-|++||||||||+++..+...+...+..++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 5899999999999999998888877666665554
No 439
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.66 E-value=0.62 Score=46.02 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=48.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1693 VCLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1693 ~~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
+|..++..++|++|..+|+++-... ..++ ..+...|..|...|++++|.++|.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~---- 65 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD------------------PEES----KYWLMKGKALYNLERYEEAVDCYNY---- 65 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC------------------CCCH----HHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC------------------cCCH----HHHHHHHHHHHHccCHHHHHHHHHH----
Confidence 3445888999999999999754311 0111 1245666777777777777766654
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHc-CCHHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLA-GCYKLAADVYAR 1810 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~-g~~~eAAelY~k 1810 (2576)
|.++.........+...|.++... |++++|.+.+.+
T Consensus 66 --a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 66 --VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp --HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred --HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 222200000122344445555555 555555555444
No 440
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.63 E-value=0.46 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+-+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4567899999999999988776554
No 441
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.63 E-value=0.97 Score=56.38 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
.+++.+-.......+..|.||||.||||++..++-.+...+.+|.+.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 4455554445557899999999999999999998877777888887764
No 442
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.60 E-value=0.66 Score=57.02 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|-||.|+||||++..+...+-..+.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 5688899999999999999988777777778877664
No 443
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=85.58 E-value=0.68 Score=65.68 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHHH
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-----KFRTLVCTPTIVAIKELASRVVKLVK 280 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-----~~rVLv~ApTN~AVd~V~~RL~~lv~ 280 (2576)
....|..++.. .-.+|++|.|+|||.+....+..++.. +.++|+++||..-+.+..+++.+...
T Consensus 253 Q~~ai~~il~g----~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 253 QIELAQPAING----KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp HHHHHHHHHTT----CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34556666543 347999999999999877777666655 78999999999999999998887764
No 444
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=85.45 E-value=12 Score=50.46 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHc
Q 000053 1788 LEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSK 1823 (2576)
Q Consensus 1788 ~~~aAe~~e~~g~~~eAAelY~kagd~~kAi~~y~k 1823 (2576)
..+||.-++..|.+.+|+++|.-+|+|++|++++.+
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~ 481 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNS 481 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence 368899999999999999999999999999997643
No 445
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.42 E-value=4.9 Score=43.82 Aligned_cols=94 Identities=13% Similarity=-0.003 Sum_probs=64.6
Q ss_pred hhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q 000053 1734 ISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF 1813 (2576)
Q Consensus 1734 l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd 1813 (2576)
....+|+.... +...|..|.+.|++++|+++|.+ |.++-. .....+...|.++...|+|++|.+.|.++-.
T Consensus 28 al~l~p~~~~~-~~~lg~~~~~~g~~~eA~~~~~~------al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 28 INAIPDDMMDD-IYSYAYDFYNKGRIEEAEVFFRF------LCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp GCCSCHHHHHH-HHHHHHHHHHTTCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHH-HHHHHHHHHHcCCHHHHHHHHHH------HHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34446665544 45556677788888888877764 444411 1235678889999999999999999988522
Q ss_pred --------HHHHHHHHHcCCCHHHHHHHHHh
Q 000053 1814 --------LAECLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1814 --------~~kAi~~y~k~k~fd~A~~l~r~ 1836 (2576)
+-..-.+|.+.|.+++|+...++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333467778888888888884
No 446
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.40 E-value=0.42 Score=51.79 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.5
Q ss_pred cCCCCEEEEecCCccHHHHHH
Q 000053 1079 LFPRSTFILGRSGTGKTTVLI 1099 (2576)
Q Consensus 1079 ~~~~~~lVlG~AGTGKTtvLl 1099 (2576)
..+.|++|.|+||||||+++.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHG
T ss_pred CCCCcEEEECCCCccHHHHHH
Confidence 456799999999999998643
No 447
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=85.38 E-value=0.44 Score=64.02 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCCChhHHhhhccccCcceEEEecCCCCCCccccccchhhhhccccHHHHHhhccCCcccccccccc--C
Q 000053 578 PLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRM--H 655 (2576)
Q Consensus 578 ~fD~VIIDEAsQ~~e~e~lipL~l~~~k~vILVGD~~QLpPvv~s~~~~~~~~~~SLfeRL~~~g~~~~~L~~qYRm--h 655 (2576)
..|+||||||++++.+.....+. +..++++++.-++...+.. ||..-+...| -..+.+.|++-.|- +
T Consensus 255 ~~dlliVDEAAaIp~pll~~ll~--~~~~v~~~tTv~GYEGtGr-------gf~lk~~~~L--~~~~~~~L~~piR~a~~ 323 (671)
T 2zpa_A 255 QADWLVVDEAAAIPAPLLHQLVS--RFPRTLLTTTVQGYEGTGR-------GFLLKFCARF--PHLHRFELQQPIRWAQG 323 (671)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHT--TSSEEEEEEEBSSTTBBCH-------HHHHHHHHTS--TTCEEEECCSCSSSCTT
T ss_pred cCCEEEEEchhcCCHHHHHHHHh--hCCeEEEEecCCcCCCcCc-------ccccccHhhc--CCCcEEEccCceecCCC
Confidence 37999999999999887665554 4478999999888654321 1211122222 13456788888887 4
Q ss_pred ccccccccccc
Q 000053 656 PSISFFPNSYF 666 (2576)
Q Consensus 656 p~I~~f~n~~f 666 (2576)
-.|-.|.++.+
T Consensus 324 DplE~wl~~~l 334 (671)
T 2zpa_A 324 CPLEKMVSEAL 334 (671)
T ss_dssp CHHHHHHHHHH
T ss_pred CCHHHHHHHhh
Confidence 47777776654
No 448
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.37 E-value=0.36 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLL 248 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll 248 (2576)
..+..|.||||+||||++..|.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5688999999999999987764
No 449
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.36 E-value=0.45 Score=56.80 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+.+-+|.||||+||||++..|...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999887775443
No 450
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.30 E-value=0.41 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.4
Q ss_pred cCCCCEEEEecCCccHHHHHHH
Q 000053 1079 LFPRSTFILGRSGTGKTTVLIM 1100 (2576)
Q Consensus 1079 ~~~~~~lVlG~AGTGKTtvLl~ 1100 (2576)
..+.|++|.|+||||||+++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 4566999999999999988654
No 451
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.26 E-value=0.48 Score=60.96 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=22.9
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
.--|+.||||||||+++..+...+ +...+.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 457899999999999987765443 44444443
No 452
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.23 E-value=0.42 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLV 249 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~ 249 (2576)
.+-.|.||||+||||++..+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999998776643
No 453
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=85.18 E-value=6.1 Score=44.27 Aligned_cols=80 Identities=8% Similarity=0.026 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHHH
Q 000053 1747 REAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAECL 1818 (2576)
Q Consensus 1747 ~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kAi 1818 (2576)
...|..+...|++++|+++|.++-+. ....+...|.++...|+|.+|.+.|.++-. +-..-
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg 78 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDP-----------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 45566666777777777777765321 134566788889999999999998887421 12233
Q ss_pred HHHHcCCCHHHHHHHHHhh
Q 000053 1819 DVCSKGKLFDIGLQYISYW 1837 (2576)
Q Consensus 1819 ~~y~k~k~fd~A~~l~r~~ 1837 (2576)
.+|.+.+.+++|+..+++.
T Consensus 79 ~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 4666788888888888743
No 454
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.15 E-value=2.3 Score=51.18 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=52.0
Q ss_pred HHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHHHH
Q 000053 1696 WLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERA 1775 (2576)
Q Consensus 1696 ~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A 1775 (2576)
.++..|+|++|..+|+++-.. +|.. ...+...|..|...|++++|.++|.++-.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~---------------------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~---- 66 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITR---------------------NPLV-AVYYTNRALCYLKMQQPEQALADCRRALE---- 66 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---------------------CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred HHHHcCCHHHHHHHHHHHHHh---------------------CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence 388899999999999965321 1110 12345566677777777777766654322
Q ss_pred HHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1776 GTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1776 ~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
+.. .....+...|..+...|+|++|.+.|.+
T Consensus 67 --~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 67 --LDG--QSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp --SCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 100 1123455667777777777777776655
No 455
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.10 E-value=1 Score=58.41 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=51.0
Q ss_pred HHHHHhhcHHHHHHHHHHcCChhHHH--HHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCH
Q 000053 1695 LWLFYEQNYEMATICFEKAKDTYWEG--RSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEY 1772 (2576)
Q Consensus 1695 ~~l~~~~~ye~A~k~f~ragd~~~~~--l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~ 1772 (2576)
..++..++|++|..+|++|-...-.. .... ..... .......+...|..|.+.|++++|+.+|.+
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~--~~~~~-------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~---- 342 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK--ESKAS-------ESFLLAAFLNLAMCYLKLREYTKAVECCDK---- 342 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH--HHHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChH--HHHHH-------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----
Confidence 33889999999999999864311000 0000 00000 001123445566666666666666655543
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 000053 1773 ERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYAR 1810 (2576)
Q Consensus 1773 ~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~k 1810 (2576)
|.++.. .....+...|.+|...|+|++|.+.|.+
T Consensus 343 --al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 343 --ALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEK 376 (457)
T ss_dssp --HHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 333311 1123455566666666666666666555
No 456
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.10 E-value=0.46 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhHHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+-+|.|||||||||++..|...+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 56899999999999988876544
No 457
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=85.01 E-value=8.4 Score=40.11 Aligned_cols=56 Identities=4% Similarity=-0.079 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHH
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVY 1808 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY 1808 (2576)
.+.+.|..|-+.|+|++|+++|.+ |.++... ....+...|.+|.+.|+|++|.+.|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~------Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDK------AIELDPS--NITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 456778888888999999887754 5555211 1233445555555555555555543
No 458
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.00 E-value=0.44 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhHHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.-+|.||||+||||+...|...|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 46788999999999887775544
No 459
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=84.94 E-value=6 Score=42.03 Aligned_cols=84 Identities=13% Similarity=0.028 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHH
Q 000053 1745 ILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAE 1816 (2576)
Q Consensus 1745 ~~~eAA~~fe~~G~~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~k 1816 (2576)
.+...|..|...|++++|..+|.+ |.++.. .....+...|.++...|+|.+|.+.|.++-. +-.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~------al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQ------AIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH------HHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 456667777777777777766654 222211 1234566788888889999999888877422 112
Q ss_pred HHHHHHcCCCHHHHHHHHHh
Q 000053 1817 CLDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1817 Ai~~y~k~k~fd~A~~l~r~ 1836 (2576)
...+|.+.+.+++|+..+++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 23355667778888777774
No 460
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.89 E-value=1.1 Score=52.89 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCe-E-EEEecChHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFR-T-LVCTPTIVAI 268 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~r-V-Lv~ApTN~AV 268 (2576)
..+-+|-||||+||||.+..+...|-..+.+ + ++-.|+.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~ 70 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLL 70 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHH
Confidence 4578899999999999999999999888887 3 4456666554
No 461
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.86 E-value=0.65 Score=59.99 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAI 268 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AV 268 (2576)
+.=.+|.||||+|||+++..++..++..|.+++|.=|.....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchh
Confidence 456899999999999999999999999999999999987664
No 462
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=84.85 E-value=1.3 Score=61.82 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEE
Q 000053 1067 PFEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQL 1143 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL 1143 (2576)
.+.+++-|.++|. ...+++|.++.|||||.+.+.-++.. +... ......++|
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~-----l~~~--------------------~~~~~~~~L 300 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHH-----FQNM--------------------PAGRKAKVV 300 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH-----HHTC--------------------CSSCCCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHH-----HHhc--------------------cccCCCeEE
Confidence 4789999999994 34689999999999999877766421 1100 001247899
Q ss_pred EEEcCHHHHHHHHHHHHhhh
Q 000053 1144 FVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1144 ~vTfS~~la~eik~ri~~l~ 1163 (2576)
+++.++.++.++.+.+.++.
T Consensus 301 vl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 301 FLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp EECSSHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHhc
Confidence 99999999999888777654
No 463
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=84.84 E-value=1.4 Score=60.29 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=51.0
Q ss_pred CCCCHHHHHhhc---CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEE
Q 000053 1068 FEVTDEQLDMIL---FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLF 1144 (2576)
Q Consensus 1068 f~Lt~EQ~~iI~---~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~ 1144 (2576)
+.+++-|.++|. ...+++|.++.|||||.+...-++.. +... ......++|+
T Consensus 12 ~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~-----l~~~--------------------~~~~~~~~lv 66 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH-----LKKF--------------------PQGQKGKVVF 66 (696)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----HHHS--------------------CTTCCCCEEE
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHH-----HHhC--------------------ccCCCCeEEE
Confidence 678999999994 34589999999999999877666421 1100 0012268999
Q ss_pred EEcCHHHHHHHHHHHHhh
Q 000053 1145 VTVSPKLCFAVKQHISHM 1162 (2576)
Q Consensus 1145 vTfS~~la~eik~ri~~l 1162 (2576)
++.++.|+.+..+.+.++
T Consensus 67 l~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 67 FANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp ECSSHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHH
Confidence 999999999888777665
No 464
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.82 E-value=0.71 Score=56.67 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|-||.|+||||++..+...+-..+.+|++.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 5689999999999999999988777777788877653
No 465
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.76 E-value=4 Score=49.45 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=62.4
Q ss_pred HHHHHHhhcHHHHHHHHHHcCChhHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 000053 1694 CLWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYE 1773 (2576)
Q Consensus 1694 ~~~l~~~~~ye~A~k~f~ragd~~~~~l~~A~~l~~~a~~l~~~~~~~a~~~~~eAA~~fe~~G~~~~Aa~~y~kag~~~ 1773 (2576)
|..+...|+|++|.++|...-... |... ..|.. +-++.+.|+|+.|..+|..+..+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~---------------------p~~~-~~~~~-a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG---------------------SEHL-VAWMK-AVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT---------------------CHHH-HHHHH-HHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC---------------------CchH-HHHHH-HHHHHHcCCHHHHHHHHHHhhccC
Confidence 344788999999999999765421 2111 12222 236666677777777776554331
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHc--CC-----HHHHH----HHHHcCCCHHHHHHHHH
Q 000053 1774 RAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARG--SF-----LAECL----DVCSKGKLFDIGLQYIS 1835 (2576)
Q Consensus 1774 ~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~ka--gd-----~~kAi----~~y~k~k~fd~A~~l~r 1835 (2576)
.- .+. ....--.|..+...|++.+|.+.|.++ |. ...|. .++.+.|..++|..+++
T Consensus 166 d~--~~~----~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 166 DK--FLA----GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp CH--HHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc--ccH----HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 000 011223466677777777777777775 22 11111 13344556666666666
No 466
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.68 E-value=0.73 Score=56.51 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.4
Q ss_pred CCCeEEEEcC-CCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 226 GATVQLIWGP-PGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 226 ~~~v~LIwGP-PGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
...+-.|.|+ ||.|||++.+.|...|...|+|||++-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 3567777777 999999999999999999999999984
No 467
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=84.67 E-value=5.7 Score=50.28 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHcCCHHHHHHHHHHhCCchHHHHHHHHHHHcCCHHHHHHHHHHcCC--------HHHH
Q 000053 1747 REAAKIFEAIGK-VDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARGSF--------LAEC 1817 (2576)
Q Consensus 1747 ~eAA~~fe~~G~-~~~Aa~~y~kag~~~~A~ely~~~~~~~~~~~aAe~~e~~g~~~eAAelY~kagd--------~~kA 1817 (2576)
...|.+|...|+ +++|+.+|.+ |+++-. .....+...|.++...|++.+|.+.|.++=. |..-
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~------al~l~P--~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITA------IIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH------HHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHH------HHHHCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 444555556664 6666655432 333311 1224577788888888888888888877422 1122
Q ss_pred HHHHHcCCCHHHHHHHHHh
Q 000053 1818 LDVCSKGKLFDIGLQYISY 1836 (2576)
Q Consensus 1818 i~~y~k~k~fd~A~~l~r~ 1836 (2576)
-.++.+.|.+++|+..+++
T Consensus 207 g~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHH
Confidence 2244455667777777764
No 468
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=84.66 E-value=0.46 Score=61.90 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=41.6
Q ss_pred HHHHHhhcCCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhcccccEEEEEcCHHH
Q 000053 1072 DEQLDMILFPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFVTVSPKL 1151 (2576)
Q Consensus 1072 ~EQ~~iI~~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~~riL~vTfS~~l 1151 (2576)
..|.+++....+++|.|+.|||||++...-++.. +.. ...++|+++.++.|
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~-----~~~------------------------~~~~~lvl~Ptr~L 62 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKD-----AIQ------------------------QRLRTAVLAPTRVV 62 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHH-----HHH------------------------TTCCEEEEECSHHH
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHH-----HHh------------------------CCCcEEEECchHHH
Confidence 3344556666789999999999999865555321 100 12689999999999
Q ss_pred HHHHHHHHH
Q 000053 1152 CFAVKQHIS 1160 (2576)
Q Consensus 1152 a~eik~ri~ 1160 (2576)
|.++.+++.
T Consensus 63 a~Q~~~~l~ 71 (459)
T 2z83_A 63 AAEMAEALR 71 (459)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999877543
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.63 E-value=0.99 Score=53.04 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhC----CCeEEEE-ecChHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQM----KFRTLVC-TPTIVAI 268 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~----~~rVLv~-ApTN~AV 268 (2576)
..+-+|-||||+||||.+..+...|-.. |.+|+++ -|+.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~ 71 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRL 71 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChH
Confidence 4578889999999999999998888776 8886544 4665554
No 470
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.59 E-value=0.46 Score=54.89 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
-+|.||||+||||++..|...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999988776554
No 471
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.58 E-value=0.98 Score=52.05 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
....+..|.||+|+||||++..|.-.+-..|..+-++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~ 57 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVP 57 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence 34678899999999999998777655544443333333
No 472
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.55 E-value=0.79 Score=58.77 Aligned_cols=46 Identities=26% Similarity=0.300 Sum_probs=32.5
Q ss_pred CHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEE
Q 000053 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 260 (2576)
Q Consensus 213 ~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv 260 (2576)
+..+++.++. ....+.+|.||+|+|||||+..++-.+-....+|++
T Consensus 155 ~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~ 200 (418)
T 1p9r_A 155 NHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT 200 (418)
T ss_dssp HHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEE
T ss_pred HHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 3456777753 447799999999999999999886544333334444
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.52 E-value=0.89 Score=60.23 Aligned_cols=50 Identities=24% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHhc-CCCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChH
Q 000053 217 IKELLCT-DSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIV 266 (2576)
Q Consensus 217 i~~vl~~-~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~ 266 (2576)
++.+|.- -...++.+|.||||+|||+++..++..+...|.+++..++.+.
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES 320 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 4455542 2337899999999999999999998877777888888877665
No 474
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.51 E-value=0.74 Score=58.59 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAI 268 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~AV 268 (2576)
+.-.+|.||||+|||+++..++..+...+.+|+++=|.+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYK 76 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHH
Confidence 446799999999999999999999999999999999987643
No 475
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.44 E-value=0.83 Score=52.40 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEE
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLV 260 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv 260 (2576)
+.+-+|.||||+||||++..|...|-..+..+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 4578999999999999999888777666666643
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=84.43 E-value=0.69 Score=57.59 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
...+.++.|-+|+|||++.+++...|...|+|||++.--
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 467999999999999999999999999999999998864
No 477
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.37 E-value=0.38 Score=63.01 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=22.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 230 QLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
.+|+||||||||+++.++...+ +...+.+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 7999999999999988765432 344555544
No 478
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.31 E-value=0.85 Score=53.43 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+|.||+|+|||+.+..++......|.+|++.-|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 67999999999999999999999999999999999885
No 479
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.30 E-value=0.6 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+-+|.||||+||||++..|...|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578899999999999988887655
No 480
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=84.14 E-value=1.1 Score=58.12 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEe
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~A 262 (2576)
+.+..|-||.|+||||++..|...+-..+.+|++.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 668999999999999999998877777788888863
No 481
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.08 E-value=0.52 Score=63.60 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 211 KGNLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 211 ~~~~~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.++..+++.+-.........+|+||||||||+++..+...+
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 35555555554444445688999999999999988775543
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.00 E-value=0.68 Score=64.25 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=25.9
Q ss_pred CCHHHHHHHH---hcCCCCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 212 GNLKIIKELL---CTDSGATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 212 ~~~~~i~~vl---~~~~~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
++-+.++.++ .....+ --+|+||||||||+++..+...+
T Consensus 190 Gr~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 190 GREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCHHHHHHHHHHHTSSSSC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCC-CeEEEcCCCCCHHHHHHHHHHHH
Confidence 4555554444 333333 45999999999999988776543
No 483
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.95 E-value=1.2 Score=60.01 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCCCHHHHHhhc-------CCCCEEEEecCCccHHHHHHHHHHHHHHhhhhhhccccccCCCcchhhhhhhhhhhhccc
Q 000053 1067 PFEVTDEQLDMIL-------FPRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVI 1139 (2576)
Q Consensus 1067 ~f~Lt~EQ~~iI~-------~~~~~lVlG~AGTGKTtvLl~Ri~~~~~~~~l~~eg~~~~~~~~~~~~~~~~~~~~~~~~ 1139 (2576)
+|+.-+.|++++. ..+.+++.|+.|||||.+.+.-++.. +.. ..
T Consensus 1 ~~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~-----~~~------------------------~~ 51 (620)
T 4a15_A 1 MYENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQY-----SSE------------------------RK 51 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHH-----HHH------------------------HT
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHh-----hhh------------------------cC
Confidence 3667788988873 34689999999999998877766421 100 12
Q ss_pred ccEEEEEcCHHHHHHHHHHHHhhh
Q 000053 1140 LRQLFVTVSPKLCFAVKQHISHMK 1163 (2576)
Q Consensus 1140 ~riL~vTfS~~la~eik~ri~~l~ 1163 (2576)
.+++++|.|+.++.++.+-+.++.
T Consensus 52 ~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 52 LKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHHHh
Confidence 689999999999998877666553
No 484
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.95 E-value=0.42 Score=55.26 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 000053 230 QLIWGPPGTGKTKTVSMLLVI 250 (2576)
Q Consensus 230 ~LIwGPPGTGKTktIs~Ll~~ 250 (2576)
-+|.||||+||||++..|...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 368999999999998877544
No 485
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.92 E-value=0.6 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.+-+|.||||+||||+...|...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 356899999999999887775544
No 486
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.89 E-value=0.57 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
.+-+|.||||+||||++..|...+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999988776544
No 487
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.72 E-value=0.77 Score=57.66 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCCCeEEEEcCCCCChhHHHHHHHHHHHhC-CCeEEEE
Q 000053 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVC 261 (2576)
Q Consensus 215 ~~i~~vl~~~~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~-~~rVLv~ 261 (2576)
++++.++... ..+.+|.||+|+||||++..++-.+-.. +.+|++.
T Consensus 113 ~~l~~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 113 EVFKRVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp HHHHHHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 3556654333 5699999999999999999988776654 5666543
No 488
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.62 E-value=0.51 Score=55.55 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.3
Q ss_pred eEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
|.+ .|-+|+|||++++++...|...|+|||++--
T Consensus 3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455 8999999999999999999999999998754
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.60 E-value=0.78 Score=67.63 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecChHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVA 267 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApTN~A 267 (2576)
.++.+|.||||||||+++..++....+.|.+++.++.-+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 78999999999999999999999999988888888775543
No 490
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.57 E-value=0.63 Score=53.24 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+-+|.||||+||||++..|...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999988776554
No 491
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.52 E-value=0.62 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+-+|.||||+||||++..|...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999988776554
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.51 E-value=0.57 Score=62.30 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 226 GATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 226 ~~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
...+.++.||||||||+++..+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36689999999999999888765554
No 493
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.46 E-value=0.62 Score=52.33 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHHHH
Q 000053 229 VQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 229 v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+-+|.||||+||||++..|...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999988776544
No 494
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=83.45 E-value=0.9 Score=56.45 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEecC
Q 000053 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264 (2576)
Q Consensus 225 ~~~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ApT 264 (2576)
..+.+.++.|-+|.|||++.+++...|...|+|||++.--
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3478999999999999999999999999999999998653
No 495
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.36 E-value=0.71 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+-+|.||||+||||++..+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578899999999999988765443
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.35 E-value=1.5 Score=50.93 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=35.3
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHHhCCC-e-EEEEecChHHHHHHHHH
Q 000053 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKF-R-TLVCTPTIVAIKELASR 274 (2576)
Q Consensus 228 ~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~-r-VLv~ApTN~AVd~V~~R 274 (2576)
.+-+|-||||+||||.+..+...|-..|. . +++--|+.+.+-+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~ 52 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRS 52 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHH
Confidence 46688999999999999999999988886 5 44555676655444333
No 497
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.34 E-value=0.99 Score=50.50 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEE
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~ 261 (2576)
+.+-.|.||||+||||++..+...|-..|..++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 34677899999999998887776665557665544
No 498
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.33 E-value=0.89 Score=57.10 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHHhCCCeEEEEec
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~Ll~~~~rVLv~Ap 263 (2576)
+.+..|-||.|+|||||+..|...+-..+.+|++.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 6689999999999999999988777777788887763
No 499
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.33 E-value=0.67 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
..+..|.||||+||||++..|...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5688999999999999988776554
No 500
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.23 E-value=0.76 Score=52.51 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHH
Q 000053 227 ATVQLIWGPPGTGKTKTVSMLLVIL 251 (2576)
Q Consensus 227 ~~v~LIwGPPGTGKTktIs~Ll~~L 251 (2576)
+-+-+|.||||+||||++..|...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478899999999999988776554
Done!