RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 000053
(2576 letters)
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 346 bits (889), Expect = e-101
Identities = 115/368 (31%), Positives = 179/368 (48%), Gaps = 15/368 (4%)
Query: 495 LSHSVDEDLSESIVDI--KYLLHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDLLKR 552
L+ ED+ S+ ++ L+ + L KL EL+ L +
Sbjct: 434 LTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEA 493
Query: 553 FCLKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGIKHAVLFGD 612
L +A + T + ++IDE+ Q E E IP+ + G K +L GD
Sbjct: 494 EILNKADVVCCTCVGAG--DKRLDTKFRTVLIDESTQASEPECLIPI-VKGAKQVILVGD 550
Query: 613 ECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIH 672
QL ++ + + +A +SLFERL L H L +QYRM+P +S FP++ FYE +
Sbjct: 551 HQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQ 610
Query: 673 DSPTVEKRSYEKRFLPGPMYG-PYSFINVFGGREEFIE--HSCRNMVEVSVVMKILLNLY 729
+ T+E+R+ P P+ G P F + GREE S N +E +I+ L+
Sbjct: 611 NGVTIEQRTVPNSKFPWPIRGIPMMFWANY-GREEISANGTSFLNRIEAMNCERIITKLF 669
Query: 730 KGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYV--NSAGFAVKVMSVDGFQGGEEDIII 787
+ + + IG+++PY Q A I + + V+V SVD FQG E+D II
Sbjct: 670 RDGVKPE---QIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYII 726
Query: 788 ISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQC 847
+S VR+N +IGF+ +PRR+NV LTRA++ L ILGN R+L RN ++W L+ + + C
Sbjct: 727 LSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARN-TLWNHLLIHFREKGC 785
Query: 848 FFNADDDK 855
D
Sbjct: 786 LVEGTLDN 793
Score = 80.4 bits (198), Expect = 5e-15
Identities = 59/338 (17%), Positives = 114/338 (33%), Gaps = 85/338 (25%)
Query: 30 SWSLEDIFNEDLFKDKVKRIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQ 89
++ DI + ++ + + ++ +Y S+ PL++ +E + +
Sbjct: 162 DATINDI-DAPEEQEAIPPLLLRYQDAYEYQRSY-GPLIK---------LEADYDKQLKE 210
Query: 90 VVAFEDSKPYGSMLYDVKVDCWRN---RFSNLGREPYKTLPGDILVLADAKPETASDLQR 146
A E S+ + + ++ S K GD ++L + + D +
Sbjct: 211 SQALEH----ISVSWSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSGMQH-PDWEG 265
Query: 147 VGRMWTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWN 206
G V + N +D + ++ +K F+ TS R+ +
Sbjct: 266 RG---YIVRLPNSFQDTFTL-------ELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQD 315
Query: 207 SLH----MKGNLK--IIKELLCTDS---------------------------------GA 227
+L K ++ + ++L
Sbjct: 316 ALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQR 375
Query: 228 TVQLIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRVVKLVKESVERD 286
+ LI GPPGTGKT T + ++ L K R LVC P+ VA+ LA+++ L
Sbjct: 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGL------ 429
Query: 287 CRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKR 324
+++ L R V+S V + L V R
Sbjct: 430 ----------KVVRLTAKSREDVESSVSNLALHNLVGR 457
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 329 bits (846), Expect = 7e-98
Identities = 112/390 (28%), Positives = 183/390 (46%), Gaps = 19/390 (4%)
Query: 484 DNLVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFV----LRKLLSSFNELNLPS 539
+ + L+ + + + +S V L ++ R+ L++L EL+
Sbjct: 242 EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD 301
Query: 540 AVEKDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTI 597
L+ +R L A + T + + + F ++IDE+ Q E E +
Sbjct: 302 EKRYRALKRTAERELLMNADVICCTCVGAG---DPRLAKMQFRSILIDESTQATEPECMV 358
Query: 598 PLQLSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPS 657
P+ L G K +L GD CQL +V K + +A +SLFERL L L +QYRMHP+
Sbjct: 359 PVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA 417
Query: 658 ISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYG-PYSFINVFGG-REEFIEHSCRNM 715
+S FP++ FYE + + T R + P P F G S N
Sbjct: 418 LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR 477
Query: 716 VEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGF--AVKVM 773
E + V KI L K + IGI++PY Q + + + + V++
Sbjct: 478 TEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIA 534
Query: 774 SVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRS 833
SVD FQG E+D II+S VR+N IGF+++PRR+NVALTRAR+ + I+GN + L++
Sbjct: 535 SVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP- 593
Query: 834 VWKALVDDAKARQCFFNADDDKDLGKSILE 863
+W L++ K ++ + +L +S+++
Sbjct: 594 LWNHLLNYYKEQKVLVEGPLN-NLRESLMQ 622
Score = 64.5 bits (157), Expect = 3e-10
Identities = 52/324 (16%), Positives = 95/324 (29%), Gaps = 88/324 (27%)
Query: 49 IPFSFRSVGQYFESFVFPLL-EETRANLMSGMEKISNAPFAQVVAFE---DSKPYGSMLY 104
+ + QY F PL+ E + K S V ++ + K
Sbjct: 2 LGSRYEDAYQYQNIF-GPLVKLEADYDKK---LKESQTQDNITVRWDLGLNKKRIAYFTL 57
Query: 105 DVKVDCWRNRFSNLGREPYKTLPGDILVLADAKPETASDLQRVGRMWTFVSVANVTEDEN 164
+ + GD + L K + A + +G + V + DE
Sbjct: 58 ------------PKTDSDMRLMQGDEICLRY-KGDLAPLWKGIGH---VIKVPDNYGDEI 101
Query: 165 EIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLHM-----KGNLKIIKE 219
I+ + + V F+ TS R+ ++L I
Sbjct: 102 AIELR--------SSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH 153
Query: 220 LLCTDS----------------------------------GATVQLIWGPPGTGKTKTVS 245
L + LI GPPGTGKT T +
Sbjct: 154 KLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA 213
Query: 246 MLLVILLQM-KFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDALFFPLGEILLLGNN 304
++ L + LVC P+ +A+ +L ++ + +++ L
Sbjct: 214 TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL----------------KVVRLCAK 257
Query: 305 ERLKVDSGVEEIYLDYRVKRLADC 328
R +DS V + L +++ +
Sbjct: 258 SREAIDSPVSFLALHNQIRNMDSM 281
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 326 bits (836), Expect = 8e-95
Identities = 110/372 (29%), Positives = 177/372 (47%), Gaps = 18/372 (4%)
Query: 501 EDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLPSAVEK---DLLEDLLKRFCLKR 557
E + + + R + L+KL +E S+ ++ L+ +R L
Sbjct: 436 EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN 495
Query: 558 ASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQLSGIKHAVLFGDECQ 615
A + T + + + F ++IDE+ Q E E +P+ L G K +L GD CQ
Sbjct: 496 ADVICCTCVGAG---DPRLAKMQFRSILIDESTQATEPECMVPVVL-GAKQLILVGDHCQ 551
Query: 616 LPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENKIHDSP 675
L +V K + +A +SLFERL L L +QYRMHP++S FP++ FYE + +
Sbjct: 552 LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 611
Query: 676 TVEKRSYEKRFLPGPMYG-PYSFINVFGG-REEFIEHSCRNMVEVSVVMKILLNLYKGWI 733
T R + P P F G S N E + V KI L K
Sbjct: 612 TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 671
Query: 734 NSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGF--AVKVMSVDGFQGGEEDIIIISTV 791
+ IGI++PY Q + + + + V++ SVD FQG E+D II+S V
Sbjct: 672 KPDQ---IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV 728
Query: 792 RSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNA 851
R+N IGF+++PRR+NVALTRAR+ + I+GN + L++ +W L++ K ++
Sbjct: 729 RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP-LWNHLLNYYKEQKVLVEG 787
Query: 852 DDDKDLGKSILE 863
+ +L +S+++
Sbjct: 788 PLN-NLRESLMQ 798
Score = 60.7 bits (147), Expect = 6e-09
Identities = 57/336 (16%), Positives = 105/336 (31%), Gaps = 81/336 (24%)
Query: 30 SWSLEDIFNEDLFKDKVKRIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQ 89
S +LED+ + ++ + + + QY F PL++ E +
Sbjct: 160 SATLEDL-EKPGVDEEPQHVLLRYEDAYQYQNIF-GPLVKLEADYDKKLKESQT------ 211
Query: 90 VVAFEDSKPYGSMLYDVKVDCWRNRFSNLGREPYKTLPGDILVLADAKPETASDLQRVGR 149
+D+ L K + + + GD + L K + A + +G
Sbjct: 212 ----QDNITVRWDLGLNKKRIAYFTLPKTDSDM-RLMQGDEICLRY-KGDLAPLWKGIGH 265
Query: 150 MWTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLH 209
+ V + DE I+ + + V F+ TS R+ ++L
Sbjct: 266 ---VIKVPDNYGDEIAIELR--------SSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK 314
Query: 210 M-----KGNLKIIKELLCTDSGATVQ---------------------------------- 230
I L V
Sbjct: 315 TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS 374
Query: 231 LIWGPPGTGKTKTVSMLLVILL-QMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRD 289
LI GPPGTGKT T + ++ L Q LVC P+ +A+ +L ++ +
Sbjct: 375 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL--------- 425
Query: 290 ALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRL 325
+++ L R +DS V + L +++ +
Sbjct: 426 -------KVVRLCAKSREAIDSPVSFLALHNQIRNM 454
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.9 bits (209), Expect = 3e-16
Identities = 110/741 (14%), Positives = 224/741 (30%), Gaps = 276/741 (37%)
Query: 811 ALTRARHCLWILGNERTLTRNRSVWKALVDDAKARQCFFNADDDKDLGKSILEAKKELNE 870
A++ W L L++ + + V++ + ++ K
Sbjct: 60 AVSGTLRLFWTL-----LSKQEEMVQKFVEEV----------LRINYK-FLMSPIK---- 99
Query: 871 LYELLNPG--STLFRSQRWKVNFSDNFLKSFRKL--TSDQTKKLVINLLLKLASGWRPEK 926
E P + ++ QR ++ ++DN + F K + Q + LL+L RP K
Sbjct: 100 -TEQRQPSMMTRMYIEQRDRL-YNDN--QVFAKYNVSRLQPYLKLRQALLEL----RPAK 151
Query: 927 RKVDSVCG------SSL--HIIKQFKVEGFYIICTIDIVKESKYFQVLKVW--------D 970
+ + G + + + +KV+ C +D F++ W
Sbjct: 152 NVL--IDGVLGSGKTWVALDVCLSYKVQ-----CKMD-------FKIF--WLNLKNCNSP 195
Query: 971 ILPLENVQNLLTRLDNIFVKNLEVPKNWATTSNIVRFKGLADNESGSDYSGAASDGRSYA 1030
LE +Q LL ++D + + N + ++
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ------------------------ 231
Query: 1031 ENSNVSDSLLLMKFYSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILFPRSTFILGRS 1090
LL K Y L V+ ++ ++A+ + F + ++L R +
Sbjct: 232 ---AELRRLLKSKPYENCLLVLLNV---QNAKAWN-AF---NLSCKILLTTRFKQVTDFL 281
Query: 1091 GTGKTTVLIMKLFQKEKLHNMALEGFFG--VNNSSQETEAEKDLEKTERVILRQLFVTVS 1148
TT + + L ++ ++ Q+ L + +T +
Sbjct: 282 SAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQD--------------LPREVLTTN 326
Query: 1149 PKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVI 1208
P+ S+I AE ++D
Sbjct: 327 PRRL-----------------------SII-------AESIRDGL--------------- 341
Query: 1209 TFHKFLMMLDGTLCNSYFERFHNIWKNYGQLQNSKSVFIETIIRKKEVNYERFSSSYWPH 1268
W N+ + K + TII E + + +
Sbjct: 342 ----------------------ATWDNWKHVNCDK---LTTII---ESSLNVLEPAEYRK 373
Query: 1269 FNAQLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVN-LSETRNSSL-SRQKRE 1326
+L+ VF HI + ++ + + D + +++ SL +Q +E
Sbjct: 374 MFDRLS-------VFPPSA-HIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 1327 ---RIYDIF------------------ESYEQMKMRNGEFDLADLVNDL-------HHRL 1358
I I+ + Y K + + DL D HH L
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHH-L 481
Query: 1359 K--EESYKGDEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRF 1416
K E + F V++D F+++ + I TA + I
Sbjct: 482 KNIEHPERMTLFRMVFLD------------FRFLEQKIR-----HDSTAWNASGSILNTL 524
Query: 1417 QDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLYRFF 1476
Q ++ FYK ++ + ND + E R ++ I +F + + +++I
Sbjct: 525 QQLK--FYKPYICD-----NDPKYE-RLVNAI----LDF-----LPKIEENLIC-----S 562
Query: 1477 PHSVDI----LKPETSLIYGE 1493
++ D+ L E I+ E
Sbjct: 563 KYT-DLLRIALMAEDEAIFEE 582
Score = 76.0 bits (186), Expect = 2e-13
Identities = 134/826 (16%), Positives = 236/826 (28%), Gaps = 324/826 (39%)
Query: 1636 KEEFSKPMFD--YWKKRFLVQVRRLDDSLAQAMQVASSPEEWKSRGIKVCEIFKKFIIFV 1693
K SK D K + RL +L S EE + +KF+ V
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLL------SKQEE----------MVQKFVEEV 86
Query: 1694 CLWLFYEQNYE-----MATICFEKAKDT--YWEGRSKASGLKAAADRISSSNPLEARI-I 1745
NY+ + T + + T Y E R DR+ + N + A+ +
Sbjct: 87 -----LRINYKFLMSPIKTEQRQPSMMTRMYIEQR----------DRLYNDNQVFAKYNV 131
Query: 1746 LREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAA 1805
R + K+ A E A + ++ G + G K
Sbjct: 132 SRL-----QPYLKLRQALL------ELRPAKNVLID----------G----VLGSGK--- 163
Query: 1806 DVYARGSFLAECLDVCSKGKL---FDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFL 1862
+++A LDVC K+ D + +W ++ S + + ++ Q L
Sbjct: 164 ------TWVA--LDVCLSYKVQCKMDFKI----FW-----LNLKNCNSPETVLEMLQKLL 206
Query: 1863 QSCALHFHKLNDNKSMMKFVRAFHSM-DLIRNFLNSKGCFDELLVLEE-ESESFMDAANI 1920
++ +D+ S +K HS+ +R L SK + LLVL ++ +A N+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 1921 ARLRGDILRTVDLLQKVGNFKEACNLTLNYVLSNSLWSSGSKGWPLKQ----FTQKKELL 1976
+ IL T T +++ L ++ + L T E+
Sbjct: 265 -SCK--ILLT----------------TRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVK 304
Query: 1977 EKAKLLAKNESNKFYNFVCTEADILSNDQSDLLIMNQQLNASKRHQSVNGETLSARKILD 2036
LL K L DL +
Sbjct: 305 S---LLLK---------------YLDCRPQDL-----------PRE--------VLTTNP 327
Query: 2037 FHLHTISSKYVWEDEYVLVEKICNNRISVQTLIYFWNCWK----DKIVNVLKYLECLKSQ 2092
L I+ + W+ WK DK+ +++ L
Sbjct: 328 RRLSIIAESI----------RDGLAT---------WDNWKHVNCDKLTTIIE--SSLNVL 366
Query: 2093 NFNDYRSYGDFCLNYLGVWRQYNNTNIIYLLL-----NGDAEWVRDLNNGHALRS----- 2142
+YR + L V+ + +I +LL + V + N S
Sbjct: 367 EPAEYRKM----FDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 2143 GNLASINVHQLVSAGRNYWSSELFSVGTKVLDNLEALHKQ--SSENSPSVWCHVLCLA-- 2198
++I++ + + K L+N ALH+ N P + +
Sbjct: 421 PKESTISIPSI-----------YLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 2199 ---YIYEVAKFLLSSNYSSLQYHAKVLQKFIDQSTEHLFDFIFPLEWRESLNENMISLKG 2255
Y Y ++ + +H K ++ + LF +F L+
Sbjct: 469 LDQYFY---------SH--IGHHLKNIEH--PERMT-LFRMVF-------LD-------- 499
Query: 2256 TKLYRNIIKEVFSKHIGLKGKLSYGQIGSAVVMILRTGKLGKDVYGRVAKRFDGYTPWKE 2315
+R F L+ K+ R D T W
Sbjct: 500 ---FR------F-----LEQKI----------------------------RHDS-TAWNA 516
Query: 2316 FVESLSINMGLESYRGSVLQNHDDMKHASHVWKFYRALCDTYEANWRRV-DYITPDCFLY 2374
L+ L+ Y+ + N YE R V + FL
Sbjct: 517 SGSILNTLQQLKFYKPYICDND-----------------PKYE---RLVNAILD---FLP 553
Query: 2375 LIERLLILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSSLFTDLHQ 2420
IE LI S + D + + ++F + H+
Sbjct: 554 KIEENLI------------CSKYTD--LLRIALMAEDEAIFEEAHK 585
Score = 75.3 bits (184), Expect = 2e-13
Identities = 103/747 (13%), Positives = 222/747 (29%), Gaps = 230/747 (30%)
Query: 1355 HHRLKEESYKGDEFHFVYIDEVQDLTMSQVALFKYVCKNIEEGF--VFSGDTAQTIARGI 1412
HH + E+ E + Y D + + V F CK++++ + S + I
Sbjct: 4 HHHMDFET---GEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSK 58
Query: 1413 DFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQNFR---THVGVLNLAQSII 1469
D LF+ L S+ ++ + ++ LR N++ + + S++
Sbjct: 59 D-AVSGTLRLFW---TLLSKQE----EMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMM 108
Query: 1470 ELLY------------RFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEV 1517
+Y F ++V L+P L LLE +N ++ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRPAKNVLI--DG----- 157
Query: 1518 GGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKGLEFQDVLLYKFFSASPLK 1577
++G GK + L + S + Q + +K F
Sbjct: 158 ---VLGS---------------------GKTWVALDVCLSY--KVQCKMDFKIF------ 185
Query: 1578 NQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITR--TRQRLWIWEN 1635
W + + +L+ L ++ + + + + +L I
Sbjct: 186 --WLNLKNCNSPETVLE-------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 1636 KEEFSKPMFDYWKKRFLVQVRRLDDSLAQAMQVASSPEEWKSRGIKVCEI-----FKKFI 1690
+ E + + + L+ V L + V + + W + + C+I FK+
Sbjct: 231 QAELRRLLKSKPYENCLL-V--LLN-------V-QNAKAWNAFNLS-CKILLTTRFKQVT 278
Query: 1691 IFVCLWLFYEQNYEMATICFEKAKDTYWEGRS----------KASGLKAAADRISSSNPL 1740
F+ I + T + L NP
Sbjct: 279 DFL-------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPR 328
Query: 1741 EARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERC---EEPELEKAGECFSL 1797
II A I + + D + ++ TI +E EP + + F
Sbjct: 329 RLSII---AESIRDGLATWD-----NWKHVNCDKLTTI-IESSLNVLEPAEYR--KMF-- 375
Query: 1798 AGCYKLA---ADVYARGSFLAECLDVCSKGKLFDIGLQYIS-YWKQHADTDVGRVKSSKE 1853
+L+ I +S W +DV V +
Sbjct: 376 ---DRLSVFPPSA--------------------HIPTILLSLIWFDVIKSDVMVV--VNK 410
Query: 1854 MKK---IEQD------FLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNF-LNSKGCFDE 1903
+ K +E+ + S L +N+ A H ++ ++ + D+
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENE------YALHRS-IVDHYNIPKTFDSDD 463
Query: 1904 LLVLEEESESF------MDAANIARLRGDILRTV--DLLQKVGNFKEACNLTLNYVLSNS 1955
L+ + + + R + R V D F E + + ++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDF-----RFLEQ---KIRH--DST 512
Query: 1956 LWSSGSKGWPL-------KQFTQKKELLEKAKLLAKNESNKFYNFVCT-EADILSNDQSD 2007
W++ K + + + + N +F+ E +++ + +D
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLV------NAILDFLPKIEENLICSKYTD 566
Query: 2008 LLIMNQQLNASKRHQSVNGETLSARKI 2034
LL ++ +++ E +++
Sbjct: 567 LL----RIALMAEDEAIFEEA--HKQV 587
Score = 75.3 bits (184), Expect = 3e-13
Identities = 99/644 (15%), Positives = 195/644 (30%), Gaps = 173/644 (26%)
Query: 104 YDVKVDCWRNRFSNLGREPYKTLPGDILVLADAKPETASDLQRVGRM-WTFVS-----VA 157
DV+ D ++ S E I++ D + R+ WT +S V
Sbjct: 36 KDVQ-DMPKSILSK---EEID----HIIMSKD-------AVSGTLRLFWTLLSKQEEMVQ 80
Query: 158 NVTEDENEIDTSPTY-FKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLHMKGN--- 213
E+ I+ Y F ++ K Q S + I +R N N + K N
Sbjct: 81 KFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSR 133
Query: 214 ----LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLL---VILLQMKFR----TL--V 260
LK+ + LL V LI G G+GKT + + +M F+ L
Sbjct: 134 LQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 261 CTPTIVAIKELASRVVKLVKESVER-DCRDALFFPLGEILLLGNNERLK---VDSGVEEI 316
+P V ++ L + ++ R D + + I L+ E
Sbjct: 193 NSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENC 246
Query: 317 YL---DYRVKRLADCFAPLTGWSHC-------FASMVEFLDNCVSQYHTYMENESM---- 362
L + + + + F C F + +FL + H +++ SM
Sbjct: 247 LLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTP 300
Query: 363 KQSEDINGDI--IKEKECGKEADASDVEIKPFL-----EFVRERFKCIINGDIIKEKECG 415
+ + + + ++ +E + P E +R+ + K C
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRD-GLATWDN--WKHVNCD 353
Query: 416 KEADASDVEIKPFLEF-----VRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMATL 470
K I+ L R+ F ++ +F HIP +++ +
Sbjct: 354 KLTTI----IESSLNVLEPAEYRKMFDRLS------VFPPSAHIPT--------ILLSLI 395
Query: 471 ISLLDSFETLLFEDNLVSEEL------EELLS-HSVDEDLSESIVDIKYLLHKRRSECHF 523
+ + ++ + L L E +S S+ +L + + +Y LH+ + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDHYN 454
Query: 524 VLRKLLSSFNELNLP--------------SAVEKDLLEDLLKRFCLKRASLFFSTASSSY 569
+ + ++L P +E L + +F
Sbjct: 455 IPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLD------ 499
Query: 570 MLHSVAMKPLNFL---VIDEAAQLKESESTIPLQLSGIKHAVLFGDECQLPAMVESKVSD 626
FL + ++ S S + + D E V+
Sbjct: 500 ---------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY---ERLVNA 547
Query: 627 EACFGRSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENK 670
F L + +L SK+ ++ + + +E
Sbjct: 548 ILDF---LPKIEENLICSKYTDLLRIAL-----MAEDEAIFEEA 583
Score = 66.0 bits (160), Expect = 2e-10
Identities = 51/331 (15%), Positives = 102/331 (30%), Gaps = 101/331 (30%)
Query: 2215 LQYHAKVLQKFIDQSTEHLFDFI---FPLEWRE-SLNENMISLKGTKLYRNIIKEVFSKH 2270
L +++QKF+++ + F+ E R+ S+ M + +LY + +VF+K+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKY 129
Query: 2271 --------IGLKGKLS----------YGQIGSAVVMILRTGK--LGKDVY--GRVAKRFD 2308
+ L+ L G +GS GK + DV +V + D
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------GKTWVALDVCLSYKVQCKMD 181
Query: 2309 GYTPWKEFVESLSINMGLESYRGSVLQNHDDMKHASHVWKFYRALCDTYEANWRRVDYIT 2368
W +N+ + +VL+ + + + + + D R+ I
Sbjct: 182 FKIFW--------LNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 2369 PDCFLYLIER-----LLIL--LSSLK-------GC--IVTTKSS----FVDWLIYQEWST 2408
+ L + LL+L + + K C ++TT+ F+ S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 2409 NPTSSLFT-----------------DL-HQS----------FGAVYEFIFNIVQQFLYSE 2440
+ S T DL + + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 2441 KETMEWIKKSC------TEIKD-YHSLVVLR 2464
+ + I +S E + + L V
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 64.1 bits (155), Expect = 7e-10
Identities = 98/595 (16%), Positives = 175/595 (29%), Gaps = 178/595 (29%)
Query: 286 DCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVE- 344
DC+D P +L E +D + RL MV+
Sbjct: 34 DCKDVQDMPKS---ILSKEE---IDHIIMSKDAVSGTLRLFWTLL-SKQ-----EEMVQK 81
Query: 345 FLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCII 404
F++ + + ++ + + + E ++ +D + F ++ R + +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQ--VFAKYNVSRLQPYL 138
Query: 405 NGDIIKE--KE--------------CGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIF 448
+++ E GK A DV C++ ++ C
Sbjct: 139 K---LRQALLELRPAKNVLIDGVLGSGKTWVALDV--------------CLSYKVQ-CKM 180
Query: 449 NFCTH---IPKCYIGEDNFHVMATLISLLDSFETLLFEDNLVSEELEELLSHSVDEDLSE 505
+F + C E ++ L+ +D T D+ + +L HS+ +L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR-SDHSSNIKLR---IHSIQAELRR 236
Query: 506 SIVDIKYLLHKRRSECHFVLR-----KLLSSFNELN---L----PSAVEKDLLEDLLKRF 553
L K C VL K ++FN L+ L V L
Sbjct: 237 ------LLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 554 CLKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQLKESESTIPLQLSGI--------- 604
L S+ + +L L +L +E +T P +LS I
Sbjct: 290 SLDHHSMTLTPDEVKSLL-------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 605 -----KHA----------------------------VLFGDECQLPAMV------ESKVS 625
KH +F +P ++ + S
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 626 D-----EACFGRSLFER-----LSHLRHSKHL-----LSIQYRMHPSI------------ 658
D SL E+ + S +L L +Y +H SI
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 659 -SFFPN---SYFYENKI--HDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSC 712
P YFY + I H E+ L ++ + F+ E+ I H
Sbjct: 462 DDLIPPYLDQYFY-SHIGHHLK---NIEHPERMTLFRMVFLDFRFL------EQKIRHDS 511
Query: 713 RNMVEVSVVMKIL--LNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKL-GSKYVN 764
++ L L YK +I + +V+ + + I+E L SKY +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 61.4 bits (148), Expect = 4e-09
Identities = 87/639 (13%), Positives = 178/639 (27%), Gaps = 214/639 (33%)
Query: 3 MEGEANNSRSKKKRAVPY-------DYGFTDT------VFSWS-LEDIFNEDLFKDKVKR 48
M+ E + + K + ++ D + S ++ I R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 49 IPFSFRSVG-QYFESFVFPLLEETRANLMSGMEKISNAPFAQVVAFE--------DSKPY 99
+ ++ S + + FV +L LMS ++ P + D++ +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 100 GSMLYDV----KVDCWRNRFSNLGREPYKTLPGD------ILVLADAKPETASDLQRVGR 149
Y+V R L + G + L + + +
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----DVCLSYKVQCK 179
Query: 150 M-----WTFVSVANVTEDENEID-------------------TSPTYFKVNATKE----- 180
M W +++ N E ++ +S ++++ +
Sbjct: 180 MDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 181 IQIDVSKKSLFVIFLINRTSNRRIWNSLHMKGNLKIIKELLCT-DSGAT----------V 229
++ + L V L+N N + WN+ + KI LL T T +
Sbjct: 238 LKSKPYENCLLV--LLN-VQNAKAWNA--FNLSCKI---LLTTRFKQVTDFLSAATTTHI 289
Query: 230 QLIWGPPGTGKTKTVSMLLVILLQMKFRTL---VCT--PTIVAI-----KELASR----- 274
L + S+LL L + + L V T P ++I ++ +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 275 ------VVKLVKESVE-------RDCRDALF-FPLG--------EI-------------- 298
+ +++ S+ R D L FP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 299 -------LLLGNNERLKVDSGVEEIYLDYRV---------KRLADCFAPLTGWSHCFASM 342
L+ + + + IYL+ +V + + D + + +
Sbjct: 409 NKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLI 465
Query: 343 VEFLDNCVSQ---YHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRER 399
+LD +H +K E + + FL+F R
Sbjct: 466 PPYLDQYFYSHIGHH-------LKNIE--------------HPERMTLFRMVFLDF---R 501
Query: 400 F---KCIINGDIIKEKECGKEADASDVEI-KPFL---EFVRERFKCIAAPLRSCIFNFC- 451
F K I + ++ KP++ + ER L + I +F
Sbjct: 502 FLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-------LVNAILDFLP 553
Query: 452 THIPKCYIGEDNFHVMATLISLLDSFETLLFEDNLVSEE 490
+ L+ + L+ ED + EE
Sbjct: 554 KIEENLICSKY-----TDLLRI-----ALMAEDEAIFEE 582
Score = 57.2 bits (137), Expect = 9e-08
Identities = 93/655 (14%), Positives = 174/655 (26%), Gaps = 216/655 (32%)
Query: 543 KDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNFLVIDEAAQ--LKESESTIPLQ 600
KD+L F + + + + + L + E
Sbjct: 19 KDILSVFEDAF----------------------VDNFDCKDVQDMPKSILSKEE------ 50
Query: 601 LSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISF 660
I H ++ D S LF L + ++ + + F
Sbjct: 51 ---IDHIIMSKDA-------VSGT-------LRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 661 FPNSYFYENKIHDSPTVEKRSY----EKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMV 716
+ E + P++ R Y ++ + ++ Y NV R +
Sbjct: 94 LMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKY---NV--SRLQ---------- 135
Query: 717 EVSVVMKILLNLYKGWINSKEKLSIGIVSPYIA---------QVAAIQEKLGSKYVNSAG 767
+ + LL L + A+ L K
Sbjct: 136 PYLKLRQALLELRPA--------------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 768 FAVKVMSVDGFQGGEEDIIII-----STVRSNNGGSIGFISNPR-RVNVALTRAR----- 816
F + +++ E ++ + + N SN + R++ R
Sbjct: 182 FKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 817 ----HCLWILGNE-------------RTL--TRNRSVWKALVDDAKARQCF------FNA 851
+CL +L N + L TR + V L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 852 DDDKDLGKSILEAK-KELNELYELLNP------GSTL----FRSQRWKVNFSDNFLK--- 897
D+ K L L+ + ++L NP ++ WK D
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 898 -SFRKLTSDQTKK----LVI---------NLLLKLASGWRPEKRK-----VDSVCGSSLH 938
S L + +K L + LL + W + V+ + SL
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSL- 416
Query: 939 IIKQFKVEGFYI-------ICTID--------IVKESKYFQVLKVWDILPLENVQNLLTR 983
+ KQ K I ++ IV + D++P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--------Y 468
Query: 984 LDNIF-------VKNLEVPKNWATTSNI----------VRFKGLADNESGSDYSGAASDG 1026
LD F +KN+E P+ + +R A N SGS +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQL 527
Query: 1027 RSY----AENSNVSDSLL--LMKFYSLSLGVVRHLLSDRDARELDLPFEVTDEQL 1075
+ Y +N + L+ ++ F + +L+ + L + DE +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 56.0 bits (134), Expect = 2e-07
Identities = 80/595 (13%), Positives = 175/595 (29%), Gaps = 153/595 (25%)
Query: 2027 ETLSARKILDFHLHTISSKYVWEDEYVLVEKICNNRISVQTLIYFWNCWKDKIVNVLK-Y 2085
+ + + D +S + E +++++ K + +S TL FW K +++ +
Sbjct: 31 DNFDCKDVQDMPKSILSKE---EIDHIIMSK---DAVS-GTLRLFW-TLLSKQEEMVQKF 82
Query: 2086 LECLKSQNFN--------DYRSYGDFCLNYLGVWRQYNNTNIIYLLLN-GDAEWVRDLNN 2136
+E + N+ + R Y+ + N N ++ N + L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 2137 G-HALRSGNLASINVHQLVSAG---------RN-----------YWSSELFSVGTK---- 2171
LR + + ++ +G + +W ++
Sbjct: 143 ALLELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPE 196
Query: 2172 -VLDNLEALHKQSSENSPSVWCHVLCLAYIYEVAKFLLSSNYSSLQYHAKVLQKFIDQST 2230
VL+ L+ L Q + N++S H+ ++ I
Sbjct: 197 TVLEMLQKLLYQ-------------------------IDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 2231 EHLFDFIFPLEWRESLNENMISLKGTKLYRNIIKEVFSKHIGLKGKLSYGQIGSAVVMIL 2290
L + + L L ++ V + + + +++
Sbjct: 232 AELRRLLKSKPYENCL------L--------VLLNVQNAKA-----WNAFNLSCKILLTT 272
Query: 2291 R----TGKLGKDVYGRVA--KRFDGYTPWKEFVESLS--INMGLESYRGSVLQNHDDMKH 2342
R T L ++ TP E L ++ + VL + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNP--RR 329
Query: 2343 ASHVWKFYRALCDTYEANWRRVDYITPDCFLYLIERLLILLSSLKGCIVTTKSSFVDWLI 2402
S + + R T++ NW+ V+ D +IE L +L + F +
Sbjct: 330 LSIIAESIRDGLATWD-NWKHVNC---DKLTTIIESSLNVLEP-----AEYRKMFDRLSV 380
Query: 2403 YQEWSTN-PT---SSLFTDLHQSFGAVYEFIFNIVQQFLYSEKETMEWIKKSCTEIKDYH 2458
+ S + PT S ++ D+ + + +V + K S E K
Sbjct: 381 FPP-SAHIPTILLSLIWFDV------IKSDVMVVVNKL----------HKYSLVE-KQPK 422
Query: 2459 SLVVLRLFVIVCLLHLNFGNSLNLLVDLLGRINITKKLSWEFYDALRRRRKRDIRIVIAE 2518
+ L L V L + + + + Y+ + D+ +
Sbjct: 423 ES--------TISIP---SIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLD 470
Query: 2519 A--FEKIGNPLVVASLGGKCPGFACPNAIVVDMEIIRCKEDILGILFPAIESSQD 2571
+ IG+ L + F + +D + K + A S +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIRHDSTAWNASGSILN 522
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.7 bits (183), Expect = 5e-13
Identities = 101/611 (16%), Positives = 187/611 (30%), Gaps = 236/611 (38%)
Query: 1173 TEGSL-----IDTDDIDDAEKLKDIPNSFI-------------DIPAKSYPLVITFHKFL 1214
+ GSL + T A +L++ F D P LV F ++
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQE---QFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 1215 M-MLDGTLCNSY----------FER-F------HNIWKNYGQLQNSKSVFIETIIRKKEV 1256
+++ + + FE + H + Q ++ V + +I+
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK---- 124
Query: 1257 NYERFSSSYWPHFNAQLA-----RKLDPSRVFTEIIS-HIK-----GGLQSIEVVNGKLN 1305
NY A++ K S +F + + + GG Q G N
Sbjct: 125 NY----------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-Q------G--N 165
Query: 1306 REDYVNLSETRNSSLSRQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYKG 1365
+DY E R D++++Y + + DL+ L E
Sbjct: 166 TDDY--FEELR-------------DLYQTYHVL--------VGDLIKFSAETLSELIRTT 202
Query: 1366 DEFHFVY---IDEVQDLT----------------------MSQVALFKYVCKNIEEGF-- 1398
+ V+ ++ ++ L + Q+A + K + GF
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL--GFTP 260
Query: 1399 -----VFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIFNLRQ 1453
G T ++G+ + ++ + E+ + +
Sbjct: 261 GELRSYLKGAT--GHSQGL------VTAVA----IAETDS------------------WE 290
Query: 1454 NFRTHVGVLNLAQSIIELLY-------RFFPHSVDILKPET---SLIYGE--P-PILLES 1500
+F + I +L+ +P++ L P SL E P P+L S
Sbjct: 291 SF------FVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSIS 342
Query: 1501 GDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVESKG- 1559
+ + T N +QV EIS G + LV++ G
Sbjct: 343 NLTQEQVQDYVNKT-----NSHLPAGKQV----------EISLVNGAKNLVVS-----GP 382
Query: 1560 ---LEFQDVLLYKFFSASPLKNQWRVVYEYMK---EQDLLDSTSPGSFPSFNEVKHNILC 1613
L ++ L K A +Q R+ + K L SP F H
Sbjct: 383 PQSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASP--F-------H---- 428
Query: 1614 SELKQLYVAITRTRQRLWIWENKEEFSK-----PMFDYWKKRFLVQVRRLDDSLAQAM-- 1666
S L L A + L +N F+ P++D + L R L S+++ +
Sbjct: 429 SHL--LVPASDLINKDL--VKNNVSFNAKDIQIPVYDTFDGSDL---RVLSGSISERIVD 481
Query: 1667 QVASSPEEWKS 1677
+ P +W++
Sbjct: 482 CIIRLPVKWET 492
Score = 68.2 bits (166), Expect = 4e-11
Identities = 106/691 (15%), Positives = 206/691 (29%), Gaps = 226/691 (32%)
Query: 681 SYEKRFL-PGPMYGPYSFINVFGGREEFIEHSCRNMVEVSVVMKILLNLYKGWINSKEKL 739
S E L P + S + +E+F KIL +G+ E
Sbjct: 15 SLEHVLLVPTASFFIASQL-----QEQFN--------------KILPEPTEGFAADDEPT 55
Query: 740 S-IGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVM--SVDGFQG---GEEDI-IIISTVR 792
+ +V ++ V+++ E + G +V+ + F+ DI + + +
Sbjct: 56 TPAELVGKFLGYVSSLVEP------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 793 SNNGGSIGFISNPRRVNVALT--RARHCLWILGNERTLTRNRSVWKALVDDAKARQ--CF 848
N ++ + + AR ++ S AL
Sbjct: 110 QENDTTL-----VKTKELIKNYITARIMA----KRPFDKKSNS---ALFRAVGEGNAQLV 157
Query: 849 --FNADDDKDLGKSILEAK-KELNELYELLNPGSTLFRSQRWKVNFSDNFLKSFRKLTSD 905
F G+ + +EL +LY+ + + FS L + T D
Sbjct: 158 AIFG-------GQGNTDDYFEELRDLYQTYHVLVGDL------IKFSAETLSELIRTTLD 204
Query: 906 QTK--KLVINLLLKLASGW--RPEKR-KVDSVCGS--SLHIIK--QFKVEGFYIICTIDI 956
K +N+L W P D + S +I Q
Sbjct: 205 AEKVFTQGLNIL-----EWLENPSNTPDKDYLLSIPISCPLIGVIQL------------- 246
Query: 957 VKESKYFQVLKVWDILPLE---NVQNLLTRLDNIFV-KNLEVPKNWAT----TSNIVR-- 1006
+ Y K+ P E ++ + + +W + +
Sbjct: 247 ---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 1007 -FKGLADNESGSDYSGAASDGRSYAENSNVSDSLLLMKFYSLSL-GVVRHLLSDR-DARE 1063
F G+ E+ + S S EN+ S M LS+ + + + D +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS--PM----LSISNLTQEQVQDYVNKTN 357
Query: 1064 LDLPFEVTDEQLDMILF--PRSTFILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNN 1121
LP +Q+++ L ++ ++ +G +L G N
Sbjct: 358 SHLP---AGKQVEISLVNGAKN-LVV----SG---------------PPQSLYGL---NL 391
Query: 1122 SSQETEAEKDLEKTERVILRQ-------LFVTVS-PKLCFAVKQHISHMKSSTIGGKFAT 1173
+ ++ +A L+++ R+ + F+ V+ P F H + A+
Sbjct: 392 TLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPVASP---F----HSHLLVP-------AS 436
Query: 1174 EGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVIT-FHKFLMMLDGTLCNSYFERFHNI 1232
+ LI+ D + + + AK + I + F DG
Sbjct: 437 D--LINKDLVKNN----------VSFNAKD--IQIPVYDTF----DG------------- 465
Query: 1233 WKNYGQLQNSKSVFIETIIR---KKEVNYE---RFSSSYWPHFNAQLARKLD--PSRV-- 1282
+ L+ E I+ + V +E +F ++ H LD P
Sbjct: 466 -SD---LRVLSGSISERIVDCIIRLPVKWETTTQFKAT---HI-------LDFGPGGASG 511
Query: 1283 FTEIISHIKGGLQSIEVVN-GKLNR---EDY 1309
+ K G + V+ G L+ +DY
Sbjct: 512 LGVLTHRNKDG-TGVRVIVAGTLDINPDDDY 541
Score = 67.4 bits (164), Expect = 7e-11
Identities = 88/595 (14%), Positives = 171/595 (28%), Gaps = 210/595 (35%)
Query: 1444 QLSDIFNLRQNFRTHVGVLNLAQ-----SIIELLYRFFPHSVDILKPETSLIYGEPPILL 1498
QL + FN T A + EL+ +F + +++P + + +L
Sbjct: 32 QLQEQFNKILPEPTE----GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VL 84
Query: 1499 ESGDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVES- 1557
L F E L +D I AL +++
Sbjct: 85 N------LCLTEF---------------ENCYLEGND-----I------HALAAKLLQEN 112
Query: 1558 -KGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQD--LLDSTSPGS---FPSF-----NE 1606
L L+ + +A + + + K+ + L + G+ F +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKR-----PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 1607 VKHNILC-SELKQLY------VA--ITRTRQRL----------------------WIWEN 1635
EL+ LY V I + + L W+ EN
Sbjct: 168 D-----YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL-EN 221
Query: 1636 KEEFSKPMFDY-------WKKRFLVQVRRLDDSLAQAMQVAS----SPEEWKS--RGIKV 1682
+ P DY ++Q LA + A +P E +S +G
Sbjct: 222 PS--NTPDKDYLLSIPISCPLIGVIQ-------LAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 1683 CEIFKKFIIFVCL-----WL-FYEQNYEMATICFEKAKDTYWEG-RSK----ASGLKAAA 1731
+ + V + W F+ + T+ F + G R + L +
Sbjct: 273 HS--QGLVTAVAIAETDSWESFFVSVRKAITVLF-------FIGVRCYEAYPNTSLPPSI 323
Query: 1732 DRISSSN----P---LEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCE 1784
S N P L + +E ++ + + K +S + +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQE--QVQDYVNKTNS---------HLPAGKQVEI---- 368
Query: 1785 EPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADT- 1843
L + ++G +Y ++ L+ K A +
Sbjct: 369 --SLVNGAKNLVVSG---PPQSLYG-----------------LNLTLR-----KAKAPSG 401
Query: 1844 -DVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGCFD 1902
D R+ S+ K FL + FH ++ + DL++N ++
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVAS-PFH-----SHLLVPASDLINKDLVKNNVSFNA--K 453
Query: 1903 ELL--VLEEESESFMDAANIARLRGDILRT-VDLL--QKVGNFKEACNLTLNYVL 1952
++ V D +++ L G I VD + V ++ ++L
Sbjct: 454 DIQIPV-----YDTFDGSDLRVLSGSISERIVDCIIRLPV-KWETTTQFKATHIL 502
Score = 60.8 bits (147), Expect = 7e-09
Identities = 100/584 (17%), Positives = 183/584 (31%), Gaps = 210/584 (35%)
Query: 592 ESESTIPLQLS-G-IKHAVL-----FG------DECQ--LPAMVESKVSDEACFGRS--- 633
++ ST PL LS G ++H +L F ++ LP E +D+ +
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAE 59
Query: 634 LFER-LSHLRHSKHLLSI-QYR--MHPSISFFPNSYFYENKIH---------DSPTVEK- 679
L + L ++ + Q+ ++ ++ F N Y N IH + T+ K
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 680 ----RSY------EKRFLPGPMY---------GPYSFINVFGG-----------RE---- 705
++Y KR G + +FGG R+
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 706 ------EFIEHS-------CRNMVEVSVVMKILLNLYKGWINSKEK------LSIGIVS- 745
+ I+ S R ++ V LN+ + W+ + L +S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPISC 238
Query: 746 PYIAQVAAIQEKLGSKYVNSA---GFAVKVM--SVDGFQGGEEDII---IISTVRSNNGG 797
P I + YV +A GF + + G G + ++ I+ S
Sbjct: 239 PLIGVIQLAH------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-- 290
Query: 798 SIGFISNPRRVNVALTRARHCLWILGNERTLT-RNRSVWKALVDDAKARQCFFNADDD-- 854
F + R+ A+T +I G N S+ ++++D+ N +
Sbjct: 291 --SFFVSVRK---AITVL---FFI-GVRCYEAYPNTSLPPSILEDSLE-----NNEGVPS 336
Query: 855 -----KDLGKSILEAKKELNELYELLNPGSTLFRSQRWKVNFSDNF--------LKSF-- 899
+L + ++ +N+ L G + S VN + N L
Sbjct: 337 PMLSISNLTQEQVQ--DYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLNL 391
Query: 900 --RKL----TSDQTKKLVINLLLKLASGWRP-EKRKVDSVCG---------SSL-----H 938
RK DQ++ P +RK+ S L
Sbjct: 392 TLRKAKAPSGLDQSRI--------------PFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 939 IIKQFKVEGFYIICTIDIVKESKYFQV--LK--VWDILPLENVQ----NLLTRL-DNIFV 989
+I + D+VK + F ++ V+D +++ ++ R+ D I
Sbjct: 438 LINK------------DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 990 KNLEVPKNW-----ATTSNIVRFKGLADNESG-SDYSGAASDGR 1027
P W ++I+ F G SG + DG
Sbjct: 486 L----PVKWETTTQFKATHILDF-G-PGGASGLGVLTHRNKDGT 523
Score = 53.9 bits (129), Expect = 7e-07
Identities = 112/741 (15%), Positives = 213/741 (28%), Gaps = 283/741 (38%)
Query: 872 YELLNPGSTLFR-SQRWKVNFSDNFLKSFRKLTSDQTKKLVINLLLKLASGWRPEKRKVD 930
+ LL P ++ F SQ + F K + T A+ P
Sbjct: 18 HVLLVPTASFFIASQLQ-----EQFNKILPEPTEG------------FAADDEPT----- 55
Query: 931 SVCGSSLHIIKQFKVEGFYIICTIDIVKESKYFQVLKVW------DILPLENVQNLLTRL 984
+ ++ +F G+ + ++ K ++ QVL + L ++ L +L
Sbjct: 56 ----TPAELVGKFL--GY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 985 DNIFVKNLEVPKNWATTSNIVRFKGLADNESGSDYSGAASDGRSYAENSNVSDSLLLMKF 1044
E T +++ + + R + S+S L
Sbjct: 109 LQ------ENDTTLVKTKELIK----------NYITARIMAKRPF---DKKSNSALF--- 146
Query: 1045 YSLSLGVVRHLLSDRDARELDLPFEVTDEQLDMILFPRSTFILGRSGTGKTTVLIMKLFQ 1104
R + + +A+ L I G G G T
Sbjct: 147 --------RA-VGEGNAQ----------------LVA----IFG--GQGNT--------- 166
Query: 1105 KEKLHNMALEGFFGVNNSSQETEAE-KDLEKTERVILRQLFVTVSPKLCFAVKQHISHMK 1163
+ +F E +DL +T V++ L + L ++ + K
Sbjct: 167 ---------DDYF----------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 1164 SSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCN 1223
T G L + + D + L IP S PL+ ++ L +
Sbjct: 208 VFTQG--LNILEWLENPSNTPDKDYLLSIPISC--------PLI-----GVI----QLAH 248
Query: 1224 SYFERFHNIWKNYGQLQN--------SKSVFIETIIRKKEVNYERFSSSYWPHFNAQLAR 1275
Y + G+L++ S+ + I + W F + +
Sbjct: 249 -YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA---------ETDSWESFFVSVRK 298
Query: 1276 KLDPSRVFTEIISHIKGGLQSIEVV-NGKLN---REDYVNLSETRNSS-LSRQKRERIYD 1330
+ ++ I G++ E N L ED + +E S LS I +
Sbjct: 299 AI-------TVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISN 343
Query: 1331 IFESYEQMKMRNGEFDLADLVNDLHHRLKEESYKGDEFHFVYIDEVQDLTMSQVALFKYV 1390
+ + EQ + D VN + L V I +L
Sbjct: 344 L--TQEQ---------VQDYVNKTNSHLPAGK------Q-VEI-----------SLV--- 371
Query: 1391 CKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRN----NGNDGRQEKRQLS 1446
N + V SG +SL+ L R +G D Q + S
Sbjct: 372 --NGAKNLVVSGPP---------------QSLY--GLNLTLRKAKAPSGLD--QSRIPFS 410
Query: 1447 DIFNLRQNFRTHVGVLNLAQSIIELLYRFFP-----HSVDILKPETSLI---YGEPPILL 1498
+ R+ ++ RF P HS +L P + LI + +
Sbjct: 411 E----RK---------------LKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSF 450
Query: 1499 ESGDEENAILKI--FG-NTG----EVGGNMVGFGAEQVILVR---DDCVRKEISNYV--- 1545
+ D ++I + G + G++ + +I + + + + ++ +
Sbjct: 451 NAKD-----IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 1546 -----GKQALVLTIVESKGLE 1561
G L + G+
Sbjct: 506 PGGASGLGVLTHRNKDGTGVR 526
Score = 53.9 bits (129), Expect = 9e-07
Identities = 91/667 (13%), Positives = 174/667 (26%), Gaps = 282/667 (42%)
Query: 252 LQMKFRTLVCTPT--------IVAIKELASRVVKLVKESVERDCRDALFFPLGEILL--- 300
LQ +F ++ PT EL + + V VE F + + L
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNLCLTEF 91
Query: 301 ----LGNNE------RLKVDSGVEEI--------YLDYRVKRLADCFAPLT--------- 333
L N+ +L ++ + Y + +A P
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAK--RPFDKKSNSALFR 147
Query: 334 ----GWSHCFA------SMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEAD 383
G + A + ++ + Y TY
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL------------------------ 183
Query: 384 ASDVEIKPFLEFVRERFKCIINGDIIKEKECGKEADA----SDVEIKPFLEFVRERFKCI 439
+ ++F E +I + EK + + + P +++ +
Sbjct: 184 -----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL------L 232
Query: 440 AAPLRSCIFNFCTHIPKCYI----------GE--DNFH---------VMATLISLLDSFE 478
+ P+ SC + Y+ GE V A I+ DS+E
Sbjct: 233 SIPI-SCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 479 TLLFEDNLVSEELEELLSHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFNELNLP 538
+ F + V + + L V C+ ++ +LP
Sbjct: 291 S--FFVS-VRKAITVLFFIGV--------------------RCY-------EAYPNTSLP 320
Query: 539 SAVEKDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNFL--VIDEAAQLKESEST 596
++ +D LE+ + S ML S++ + +++ +
Sbjct: 321 PSILEDSLEN--------------NEGVPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 597 IPLQLS-GIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSI-QYRM 654
+ + L G K+ V+ G P +SL+ LR +K + Q R
Sbjct: 366 VEISLVNGAKNLVVSG-----PP-------------QSLYGLNLTLRKAKAPSGLDQSR- 406
Query: 655 HPSISFFPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRN 714
I F + K + RFL P+ P+ H
Sbjct: 407 ---IPF---------------SERKLKFSNRFL--PVASPF--------------H---- 428
Query: 715 MVEVSVVMKILLNLYKGWINSKEKLSIGIVSPYIAQVAA-IQEKLGSKYVNSAGFAVKVM 773
S + + I + L V+
Sbjct: 429 ------------------------------SHLLVPASDLINKDLVKNNVS--------- 449
Query: 774 SVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTRNRS 833
F + I + T +G S+ R ++ +++ R I R
Sbjct: 450 ----FNAKDIQIPVYDT---FDG------SDLRVLSGSISE-RIVDCI-------IRLPV 488
Query: 834 VWKALVD 840
W+
Sbjct: 489 KWETTTQ 495
Score = 53.5 bits (128), Expect = 1e-06
Identities = 76/443 (17%), Positives = 135/443 (30%), Gaps = 148/443 (33%)
Query: 2136 NGHALRSGNLA--SINVHQLVSAGRNYWSSEL---FSVGTKVL----DNLEALHKQSSEN 2186
+ ++ R L+ S+ LV + +S+L F K+L + A + ++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQF---NKILPEPTEGFAADDEPTTPA 58
Query: 2187 SPSVWCHVLCLAYIYEVAKFLLSSNYSSLQYHAKVLQKFIDQSTEHLFDFIFPLEWRE-- 2244
L ++ V+ + S +VL + + F+ + LE +
Sbjct: 59 E-------LVGKFLGYVSSLVEPSKVGQ---FDQVLNLCLTE-----FENCY-LEGNDIH 102
Query: 2245 SLNENMISLKGTKLYR--NIIKEVFSKHIGLKGKLSYGQIGSAVVMILRTGKLGKDVYGR 2302
+L ++ T L + +IK + I K + SA + R G +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD-KKSNSA---LFRAVGEGN---AQ 155
Query: 2303 VAKRFDG----YTPWKEFVESLSINMGLESYRGSVLQNHDDMKHASHVWKFYRALCDTYE 2358
+ F G ++E L+ Y TY
Sbjct: 156 LVAIFGGQGNTDDYFEE------------------LR------------DLY----QTYH 181
Query: 2359 ANWRRVDYITPDCFLYLIERLLILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSSLFTDL 2418
+ LI+ LS L + + F L EW NP+++ D
Sbjct: 182 V------LVGD-----LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD- 229
Query: 2419 HQSFGAVYEFIFNIVQQFLYSEKETMEWIKKSCTEIKDYHSLVVLRLFVIVC-LLHLNFG 2477
+L S I SC I ++ L +V+ LL G
Sbjct: 230 -----------------YLLS-------IPISCPLI----GVIQLAHYVVTAKLLGFTPG 261
Query: 2478 NSLNLLVDLLGRIN-------ITKKLSWE-FYDALRRRRKRDIRIVIAEAFEKIGNPLVV 2529
+ L G I + SWE F+ ++R+ I F
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--------AITVLF--------- 304
Query: 2530 ASLGGKC----PGFACPNAIVVD 2548
+G +C P + P +I+ D
Sbjct: 305 -FIGVRCYEAYPNTSLPPSILED 326
Score = 50.0 bits (119), Expect = 1e-05
Identities = 102/672 (15%), Positives = 194/672 (28%), Gaps = 218/672 (32%)
Query: 1946 LTLNY-------VLSNSLWSSGSKGW---------PLKQFTQKKELLEKAKLLAKNESNK 1989
LTL++ ++ + + S+ P + F E A+L+ K
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK----- 63
Query: 1990 FYNFVCTEADILSNDQSDLLIMNQQLNASKRHQSVNGETLSARKILDFHLHTISSKYVWE 2049
F +V + + Q D + LN L I H +++K + E
Sbjct: 64 FLGYVSSLVEPSKVGQFDQV-----LNLCLTE--FENCYLEGNDI-----HALAAKLLQE 111
Query: 2050 DEYVLVEKICNNRISVQTLI--YFWNCWKDKIVNVLKY----LECLKSQNFNDYRSYGDF 2103
++ LV+ + LI Y K K + N +G
Sbjct: 112 NDTTLVKT--------KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-- 161
Query: 2104 CLNYLGVWRQYNNTNIIYL-----LLNGDAEWVRDLNNGHALRSGNLASINVHQLVSAGR 2158
G Q N + Y L V DL A L +
Sbjct: 162 -----G---QGNTDD--YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD------- 204
Query: 2159 NYWSSELFSVGTKVLDNLEALHKQSSENSPSVWCHVLCLAYI-------YEVAKFLLSSN 2211
+ ++F+ G L+ LE L S+ +P L I ++A +++++
Sbjct: 205 ---AEKVFTQG---LNILEWLENPSN--TPDK--DYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 2212 YSSLQYHAKVLQKFIDQSTEHLFDFIFPL------EWRESLNENMISLKGTKLYRNIIKE 2265
L + L+ ++ +T H + + W ES ++ R I
Sbjct: 255 --LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSV---------RKAITV 302
Query: 2266 VFSKHIGLKGKLSYGQIGSAVVMILRTGKLGKDVYGRVAKRFDGYTPWKEFVESLSINMG 2325
+F IG++ +Y ++ +SL N G
Sbjct: 303 LF--FIGVRCYEAYPNTSLPPSIL---------------------------EDSLENNEG 333
Query: 2326 LESYRGSVLQNHDDMKHASHVWKFYRALCDTYEANWRRVDYI----TPDCF--------L 2373
+ S S+ ++ V + A ++V I L
Sbjct: 334 VPSPMLSIS----NLTQE-QVQDYVNKTNSHLPAG-KQV-EISLVNGAKNLVVSGPPQSL 386
Query: 2374 YLIERLL-------------ILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSSLFTDLHQ 2420
Y + L I S K + + F+ P +S F H
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERK---LKFSNRFL-----------PVASPF---HS 429
Query: 2421 SF--GAVYEFIFNIVQQFLYSEKETMEWIKKS------CTE----IKDYHSLVVLRLFVI 2468
A +++ + L K + + K T ++ + R+
Sbjct: 430 HLLVPAS-----DLINKDL--VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 2469 VCLLHLNFGNSLNL----LVDL-LGRINITKKLSWEFYDALRRRRKRDIRIVIAEAFEKI 2523
+ L + + + ++D G + L+ R + +R+++A +
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGLGVLT------HRNKDGTGVRVIVAGTLDI- 535
Query: 2524 GNPLVVASLGGK 2535
NP G K
Sbjct: 536 -NP--DDDYGFK 544
Score = 49.3 bits (117), Expect = 2e-05
Identities = 100/618 (16%), Positives = 187/618 (30%), Gaps = 198/618 (32%)
Query: 79 MEKISNAPFAQVVAFEDSKPYGSMLYDVKV--DCW------RNRFSNLGREPYKTLPGDI 130
M+ S P ++ +GS+ + + V + + +F+ K LP
Sbjct: 1 MDAYSTRPL--TLS------HGSLEHVLLVPTASFFIASQLQEQFN-------KILPEPT 45
Query: 131 LVLA-DAKPETASDLQRVGRMWTFVS-VANVTEDENEIDTSP------TYFKVN--ATKE 180
A D +P T ++L VG+ F+ V+++ E T F+ +
Sbjct: 46 EGFAADDEPTTPAEL--VGK---FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 181 I------------QIDVSKKSLFVIF-----LINRTSNRRIWNSLHMKGNLKIIKELL-- 221
I V K L + + R +++ NS L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSA-----------LFRA 148
Query: 222 CTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKF---RTLVCT-PTIVA--IKELASRV 275
+ A + I+G G G T F R L T +V IK A +
Sbjct: 149 VGEGNAQLVAIFG--GQGNTDDY-----------FEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 276 VKLVKESVERDCRDALFFPLG-EILLLGNNERLKVDSGVEEIYLDYRVKRLADCFA--PL 332
+L++ +++ + F G IL N D DY L PL
Sbjct: 196 SELIRTTLDAE----KVFTQGLNILEWLENPSNTPDK-------DY----LLSIPISCPL 240
Query: 333 TGWSHCFASMVEFLDNC-VSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVE--- 388
G + ++ + + +K + + ++ A+ E
Sbjct: 241 IG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI---AETDSWESFF 293
Query: 389 --IKPFLEF-----VR--ERF-KCIINGDIIKEKECGKEADASDVEIKPFLEFVRERFKC 438
++ + VR E + + I+++ E S P L +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-----PMLS-ISN---L 344
Query: 439 IAAPLRSCIFNFCTHIPKCYIGEDNFHVMATLISLLDSFETLLFEDNLV----SEELEEL 494
++ + +H+P V ISL++ NLV + L L
Sbjct: 345 TQEQVQDYVNKTNSHLP------AGKQVE---ISLVNGA------KNLVVSGPPQSLYGL 389
Query: 495 LSH----SVDEDLSESIVDIKYLLHKRRSECHFVLRKL-LSS-FNELNLPSAVEKDLLED 548
L +S + +R+ + F R L ++S F+ L A + + +D
Sbjct: 390 NLTLRKAKAPSGLDQS----RIPFSERKLK--FSNRFLPVASPFHSHLLVPASDL-INKD 442
Query: 549 LLKR-FCLKRASL---FFST-------ASSSYMLHSVAM----KPLNFLVIDEAAQLKES 593
L+K + + T S + + P+ + + Q K +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW---ETTTQFKAT 499
Query: 594 ESTIPLQLSGIKHAVLFG 611
H + FG
Sbjct: 500 ------------HILDFG 505
Score = 48.5 bits (115), Expect = 4e-05
Identities = 56/373 (15%), Positives = 110/373 (29%), Gaps = 150/373 (40%)
Query: 1288 SHIKG-GL---QSIEVVNGKLNREDYVNLSETRNSSLSR---------------QKRERI 1328
S +G G+ ++ + NR D + +T S+ +K +RI
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRAD-NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 1329 YDIFESYEQMKMRN---GEFDLADLVNDLHHRLKEESYKGDEFHFVYIDEVQDLTM-SQV 1384
E+Y M G+ + +++ +++ ++ + T +Q
Sbjct: 1685 R---ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-------GLLSATQFTQP 1734
Query: 1385 ALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQ 1444
AL + + F+D++S G
Sbjct: 1735 ALT-------------------LMEKAA---FEDLKS------------KG--------- 1751
Query: 1445 LSDIFNLRQNFRTH-----------VGVLNLAQSIIELL-YR--FFPHSVDILKPETSLI 1490
+ F H V+++ S++E++ YR +V P
Sbjct: 1752 ---LIPADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQVAV----PRD--- 1800
Query: 1491 YGEPPILLESGDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRK-----EISNY- 1544
E G ++ I N G V F E + V + ++ EI NY
Sbjct: 1801 --------ELGRSNYGMIAI--NPGRVA---ASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 1545 -VGKQALVLTIV---ESKGLE-FQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLDSTSPG 1599
+Q V + + L+ +VL ++K Q +
Sbjct: 1848 VENQQ-----YVAAGDLRALDTVTNVL------------------NFIKLQKIDIIELQK 1884
Query: 1600 SFPSFNEVKHNIL 1612
S S EV+ ++
Sbjct: 1885 SL-SLEEVEGHLF 1896
Score = 45.4 bits (107), Expect = 3e-04
Identities = 112/657 (17%), Positives = 207/657 (31%), Gaps = 257/657 (39%)
Query: 1857 IEQDFLQSCALHFH--KLND--NKSMMKFVRAFHSMD-------LIRNFL---------N 1896
+E L A F +L + NK + + F + D L+ FL +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 1897 SKGCFDELL--VLEEESESFMDAANI----ARLRGD----ILRTVDLLQKVGNFKEACNL 1946
G FD++L L E +++ +I A+L + +++T +L++ N+ A +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK---NYITARIM 132
Query: 1947 T---LNYVLSNSLWSS------------GSKGWPLKQFTQKKELLEKAKLLAKNESNKFY 1991
+ +++L+ + G +G F +EL + Y
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF---EELRD------------LY 177
Query: 1992 NFVCTEADILSNDQSDLLIMNQQLNASKRHQSVNGETLSARKI----LDFH--LHTISSK 2045
T ++ DL+ +++ + TL A K+ L+ L S+
Sbjct: 178 Q---TYHVLVG----DLIK-----FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 2046 YVWEDEYVLVEKICNNRISVQTLIYFWNCWKDKIVNVLKYLECLKSQNFNDYRSYGDFCL 2105
D+ L + IS LI ++ + Y+ K F G+
Sbjct: 226 ---PDKDYL----LSIPISC-PLIG--------VIQLAHYVVTAKLLGFT----PGELRS 265
Query: 2106 NYLGVWRQYNNTNIIYLLLNGDAEWVRDLNNGHALRSGNLASINVHQLVSAGRNYWSSE- 2164
G +G+ + ++ + W S
Sbjct: 266 YLKGA-------------------------------TGHSQGLVTAVAIAETDS-WESFF 293
Query: 2165 ---------LFSVGTKVLD-----NLEALHKQSS----ENSPSVWCHVLCLAYIYEVAKF 2206
LF +G + + +L + S E PS
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS----------------P 337
Query: 2207 LLS-SNYSSLQYHAKVLQKFIDQSTEHLFDFIFPLEWRESLNENMISLKGTKLYRNIIKE 2265
+LS SN + Q +Q +++++ HL P + ISL +N+
Sbjct: 338 MLSISNLTQEQ-----VQDYVNKTNSHL-----PAGKQVE-----ISLVNG--AKNL--- 377
Query: 2266 VFSKHIGLKGKLSYGQIGSAVVMILRTGKL--GKD---------------VYGRVAKRFD 2308
V S G L YG + + LR K G D + VA F
Sbjct: 378 VVS---GPPQSL-YG-----LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 2309 GYTPWKEFVESLSINMGLESYRGSVLQNHDDMKHASHVWKFYRALCDTYE-ANWRRVD-Y 2366
++ L IN L + +V N D++ V+ DT++ ++ R +
Sbjct: 428 -HSHLLVPASDL-INKDLV--KNNVSFNAKDIQ--IPVY-------DTFDGSDLRVLSGS 474
Query: 2367 ITPDCFLYLIERLLILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSSLFTDLHQSFG 2423
I+ +++ CI+ V W E +T ++ D FG
Sbjct: 475 ISER----IVD-----------CIIRLP---VKW----ETTTQFKATHILD----FG 505
Score = 45.0 bits (106), Expect = 4e-04
Identities = 117/697 (16%), Positives = 193/697 (27%), Gaps = 270/697 (38%)
Query: 1695 LWLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARI---ILREAAK 1751
+ Q ++ + + + + AA D ++ L + +
Sbjct: 26 SFFIASQ-----------LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 1752 IFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVYARG 1811
+G+ D E+E YL G D++A
Sbjct: 75 --SKVGQFDQVLNLCLT--EFENC---YL----------EGN------------DIHA-- 103
Query: 1812 SFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHK 1871
LA L + L +Y A R K S AL F
Sbjct: 104 --LAAKLLQENDTTLVKTKELIKNYI--TARIMAKRPFDKKS---------NS-AL-FRA 148
Query: 1872 LNDNKSMMKFVRAF----HSMDLIRNFLNSKGCFDELLVLEEESESFMDA--ANIARLRG 1925
+ + + + V F N+ F+EL L + + A
Sbjct: 149 VGEGNA--QLVAIFGGQG----------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1926 DILRTVDLLQKVGNFKEACNLT-----------LNYVLSNSLWSSGSKGWPLKQFTQKKE 1974
+++RT +KV F + N+ +Y+LS + S PL Q
Sbjct: 197 ELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPI-S-----CPLIGVIQ--- 245
Query: 1975 LLEKAKLLAKNESNKFYNFVC-----TEADILSNDQSDLLIMNQQLNASKRHQSVNGETL 2029
LA Y T ++ S + A+ Q + +
Sbjct: 246 -------LAH------YVVTAKLLGFTPGELRSYLKG----------ATGHSQGL----V 278
Query: 2030 SARKILDFHLHTISSKYVWEDEYVLVEKICNNRISVQTLIYFWNCWKDKIVNVLKYLECL 2089
+A I+ WE +V V K + L F+ I +
Sbjct: 279 TAV--------AIAETDSWESFFVSVRKA------ITVL--FF------IG--------V 308
Query: 2090 KSQNFNDYRSYGDFCLNYLGVWRQYNNTNII----YLLLNGDAEWVRDLN---------- 2135
+ +Y + L + + + N +L + +L
Sbjct: 309 RCY-----EAYPNTSLPPSIL--EDSLENNEGVPSPMLS------ISNLTQEQVQDYVNK 355
Query: 2136 -NGHALRSGNLASINVHQLVSAGRNYWSSELFSV-G-TKVLDNLE-ALHK--------QS 2183
N H L +G I+ LV+ +N V G + L L L K QS
Sbjct: 356 TNSH-LPAGKQVEIS---LVNGAKN------LVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 2184 ----SENSP---------SVWCHVLCLA-----YIYEVAKFLLSSNYSSLQ---YH---A 2219
SE + H L ++ K +S N +Q Y
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 2220 KVLQKFIDQSTEHLFDFIF--PLEWRESLNENMISLKGTKLYRNIIKEVFSKHI------ 2271
L+ +E + D I P++W E K T HI
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKW-----ETTTQFKAT-------------HILDFGPG 507
Query: 2272 ---GLKGKLSYGQI-GSAVVMILRTGKLGK---DVYG 2301
GL G L++ G+ V +I+ G L D YG
Sbjct: 508 GASGL-GVLTHRNKDGTGVRVIV-AGTLDINPDDDYG 542
Score = 43.5 bits (102), Expect = 0.001
Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 68/241 (28%)
Query: 1701 QNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEA-------------RIILR 1747
+NY A + FE D G+ K + + S+S + + L
Sbjct: 1686 ENY-SA-MIFETIVD----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 1748 EAAKIFEAI---GKVDSAAKCFF---DMGEYERAGTIYLERCEEPELEKAGECFSLAGCY 1801
E A FE + G + + A F +GEY A L + S+
Sbjct: 1740 EKA-AFEDLKSKGLIPADA--TFAGHSLGEYA-A------------LASLADVMSIESLV 1783
Query: 1802 KLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDF 1861
++ V+ RG + + G+ + G+ + GRV +S + ++
Sbjct: 1784 EV---VFYRGMTMQVAVPRDELGRS-NYGM---------IAINPGRVAASFSQEALQY-V 1829
Query: 1862 LQSCALHFHKL----NDNKSMMKFV-----RAFHSMDLIRNFLNSKGC-FDELLV---LE 1908
++ L N N ++V RA ++ + NF+ + EL LE
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 1909 E 1909
E
Sbjct: 1890 E 1890
Score = 40.4 bits (94), Expect = 0.011
Identities = 43/312 (13%), Positives = 85/312 (27%), Gaps = 128/312 (41%)
Query: 379 GKEA-DASDVEIKPFLEFVRERFKCIINGDIIKEKECGKEADASDVEIKPF--LEFVRER 435
G + S ++ + AD + F L+ V
Sbjct: 1632 GMDLYKTSKA--------AQDVWN---------------RADNHFKDTYGFSILDIVIN- 1667
Query: 436 FKCIAAPLRSCIFNFCTHIPKCYIGEDNFHVMATLISLLDSFETLLFEDNLVSEELEELL 495
P + +F K I E+ + ++FE + + E +
Sbjct: 1668 -----NP-VNLTIHFGGEKGK-RIREN--------------YSAMIFETIVDGKLKTEKI 1706
Query: 496 SHSVDEDLSESIVDIKYLLHKRRSECHFVLRKLLSSFN----ELNLPS-------AVEKD 544
++E + F L+ +EK
Sbjct: 1707 FKEINEHSTSYT------------------------FRSEKGLLSATQFTQPALTLMEKA 1742
Query: 545 LLEDLLKRFCLKRASLF-------FSTASSSYMLHSVAMKPLNFLVIDEAAQL-----KE 592
EDL + + + F ++ A L S+A + + I+ ++
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYA-A-----LASLA----DVMSIESLVEVVFYRGMT 1792
Query: 593 SESTIPLQLSGIKH----AVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLL 648
+ +P G + A+ P V + S EA + + ER+ + + L+
Sbjct: 1793 MQVAVPRDELGRSNYGMIAI-------NPGRVAASFSQEAL--QYVVERVG--KRTGWLV 1841
Query: 649 SI--------QY 652
I QY
Sbjct: 1842 EIVNYNVENQQY 1853
Score = 38.1 bits (88), Expect = 0.056
Identities = 41/308 (13%), Positives = 79/308 (25%), Gaps = 140/308 (45%)
Query: 1215 MMLDGTLCNSYFERFHNIWK--------NYGQLQNSKSVF-IETIIRK--KEVNYERFSS 1263
M +D L + + ++W YG F I I+ +
Sbjct: 1631 MGMD--LYKT-SKAAQDVWNRADNHFKDTYG--------FSILDIVINNPVNLTI----- 1674
Query: 1264 SYWPHFNAQLARKL-------------DPSRVFTEIISHIKGGLQSI--EVVNGKLNRED 1308
HF + +++ D +I I S G L+
Sbjct: 1675 ----HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-- 1728
Query: 1309 YVNLSETRNS-------SLSRQKRERIYDIFESYEQMKMRN-------------GE---- 1344
T+ + + ++E +K + GE
Sbjct: 1729 ------TQFTQPALTLMEKA------------AFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 1345 ------FDLADLVNDLHHR--LKEESYKGDEFHF-------VYIDEVQDLTMSQVALFKY 1389
+ LV + +R + + DE + V + SQ AL +Y
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEAL-QY 1828
Query: 1390 VCKNI--EEGF--------------VFSG-----DTAQTI-----ARGID-------FRF 1416
V + + G+ V +G DT + + ID
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 1417 QDIRSLFY 1424
+++ +
Sbjct: 1889 EEVEGHLF 1896
Score = 37.3 bits (86), Expect = 0.082
Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 91/288 (31%)
Query: 2319 SLSINMGLESYRGSVLQNHDDMKHASHVWKFYRA---LCDTYEANWRRVDYIT--PDCFL 2373
S MG++ Y+ S K A VW RA DTY + +D + P
Sbjct: 1626 SQEQGMGMDLYKTS--------KAAQDVWN--RADNHFKDTY--GFSILDIVINNP---- 1669
Query: 2374 YLIERLLILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSS--LFTDLHQSFGAVYEFIFN 2431
L I KG + S +I++ + +F ++++ + F
Sbjct: 1670 ---VNLTIHFGGEKGKRIRENYSA---MIFETIVDGKLKTEKIFKEINEHST---SYTFR 1720
Query: 2432 IVQQFLYS-----------EKETMEWIKKSCTEIKDY----HS------LV----VLRLF 2466
+ L + EK E +K D HS L V+ +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 2467 VIVCLLHLNFGNSLNLLV--DLLGRIN----------ITKKLSWEFYDALRRRRKRDIRI 2514
+V ++ G ++ + V D LGR N + S E ++
Sbjct: 1781 SLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-----------ALQY 1828
Query: 2515 VIAEAFEKIGNPLVVASLGGKCPGFACPNAIVV---DMEIIRCKEDIL 2559
V+ ++ G + + + N V D+ + ++L
Sbjct: 1829 VVERVGKRTGWLVEIV-------NYNVENQQYVAAGDLRALDTVTNVL 1869
Score = 37.0 bits (85), Expect = 0.12
Identities = 40/222 (18%), Positives = 67/222 (30%), Gaps = 81/222 (36%)
Query: 64 VFPLLEETRANLMSGMEKIS----NAPFAQVVAFEDSKP---YG--SMLYDVKV----DC 110
V + +T ++L +G +++ N VV+ P YG L K D
Sbjct: 349 VQDYVNKTNSHLPAG-KQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 111 WRNRFSNLGREP---YKTLPGDILV------LADAKPETASDLQRVGRMWTFVSVANVTE 161
R FS R+ + LP + L A DL + +
Sbjct: 405 SRIPFS--ERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSF---------- 450
Query: 162 DENEIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLHMKGNL--KIIKE 219
K+IQI V + S+ R + G++ +I+
Sbjct: 451 ---------------NAKDIQIPV--------YDTFDGSDLR-----VLSGSISERIVDC 482
Query: 220 LL--------CTDSGATVQLIWGPPGTGKTKTVSMLLVILLQ 253
++ T AT L +GP G + +L
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGP---GGASGLGVLTHRNKD 521
Score = 35.8 bits (82), Expect = 0.29
Identities = 57/320 (17%), Positives = 93/320 (29%), Gaps = 117/320 (36%)
Query: 1769 MG--EYER---AGTIYLERCEEPELEKAGECFSLAGCYK---LAADVYARGSFLAECLDV 1820
MG Y+ A ++ R + + G FS+ + ++ G
Sbjct: 1631 MGMDLYKTSKAAQDVW-NRADNHFKDTYG--FSILDIVINNPVNLTIHFGGE-------- 1679
Query: 1821 CSKGKLFDIGLQYISY-WKQHADTDVGRVKSSKEMKKI-----------EQDFL------ 1862
KGK I Y + ++ D G++K+ K K+I E+ L
Sbjct: 1680 --KGK--RIRENYSAMIFETIVD---GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 1863 Q------SCALHFHKLNDNKSMMKFVRAF--HSMDLIRNFLNSKGCFDEL--LVLEEESE 1912
Q A F L K ++ F HS L G E L +
Sbjct: 1733 QPALTLMEKAA-FEDLKS-KGLIPADATFAGHS-------L---G---EYAALASLADVM 1777
Query: 1913 SFMDAANIARLRGDILRTVDLLQKVGNFKE---ACNL----------TLNYVLSNSLWSS 1959
S + RG ++ ++G A N L YV+ +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 1960 GSKGWPLKQFTQKKELLEKAKLLAKNESNKFYN-----FVC---TEA-DILSNDQSDLLI 2010
G L+E N YN +V A D ++N + + +
Sbjct: 1838 G-------------WLVEIV-----N-----YNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Query: 2011 MN---QQLNASKRHQSVNGE 2027
+L S + V G
Sbjct: 1875 QKIDIIELQKSLSLEEVEGH 1894
Score = 34.6 bits (79), Expect = 0.58
Identities = 53/311 (17%), Positives = 97/311 (31%), Gaps = 134/311 (43%)
Query: 1837 WKQHADTDVGRVKSSKE-----MKKIEQDFLQSCALHF-----HKLNDNKSMMKFVRAFH 1886
W + AD K+ + I + + +HF ++ +N S M F
Sbjct: 1646 WNR-AD------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE---T 1695
Query: 1887 SMDLIRNFLNSKGCFDELLVLEEESESFMDAANIARLRGDILRTVDLLQKVGNFKEACNL 1946
+D L ++ F E+ E S S+ R + K +
Sbjct: 1696 IVD---GKLKTEKIFKEI---NEHSTSYT-------FRSE--------------KGLLSA 1728
Query: 1947 TLNYVLSNSLWSSGSKGWPLKQFTQ---------KKELLEKAKLLAKN---------ESN 1988
T QFTQ E L+ L+ + E
Sbjct: 1729 T--------------------QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-- 1766
Query: 1989 KFYNFVCTEADILS-NDQSDLL----IMNQQLNASKRHQ---------SVNGETLSA--- 2031
Y + + AD++S +++ + Q A R + ++N ++A
Sbjct: 1767 --YAALASLADVMSIESLVEVVFYRGMTMQ--VAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 2032 RKILDFHLHTISSKYVWEDEYVLVEKICN-NR------IS--VQTLIYFWNCWKDKIVNV 2082
++ L + + + + W LVE I N N + ++ L D + NV
Sbjct: 1823 QEALQYVVERVGKRTGW-----LVE-IVNYNVENQQYVAAGDLRAL--------DTVTNV 1868
Query: 2083 LKYLECLKSQN 2093
L + +K Q
Sbjct: 1869 LNF---IKLQK 1876
Score = 33.5 bits (76), Expect = 1.5
Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 102/278 (36%)
Query: 40 DLFK--DKVKRIPFSFRSVGQYF-ESFVFPLLEETRANLMSGMEKISNAPFAQVVAF--E 94
DL+K + + + +F +++ F +L+ N P + F E
Sbjct: 1634 DLYKTSKAAQDV---WNRADNHFKDTYGFSILDIVINN-----------PVNLTIHFGGE 1679
Query: 95 DSKP----YGSMLYDVKVDCWRNRFSNLGREPYKTLPGDILVLADAKPETASDLQRVGRM 150
K Y +M+++ VD G+ + + +I E ++
Sbjct: 1680 KGKRIRENYSAMIFETIVD---------GKLKTEKIFKEI-------NEHSTSY------ 1717
Query: 151 WTFVSVANVTEDENEIDTSPTYFKVNATKEIQIDVSKKSLFVIFLINRTSNRRIWNSLHM 210
TF ++ + T F T Q + L+ + + L
Sbjct: 1718 -TF------RSEKGLLSA--TQF----T---QP--------ALTLMEKA----AFEDLKS 1749
Query: 211 KGNLKIIK--------EL--LCTDSGA-----TVQLIW--G-------PPGTGKTKTVSM 246
KG + E L + + V++++ G P M
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 247 LLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVE 284
+ + ++ + + A++ + RV K VE
Sbjct: 1810 IAINPGRV-----AASFSQEALQYVVERVGKRTGWLVE 1842
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 57.1 bits (137), Expect = 4e-08
Identities = 34/279 (12%), Positives = 72/279 (25%), Gaps = 61/279 (21%)
Query: 543 KDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNF--LVIDEAAQLKESESTIPLQ 600
+++ + A+ S++++ F L IDE L ++
Sbjct: 197 AEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVE 256
Query: 601 LSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLRHSKHLLSIQYRMHPSISF 660
+S A ++GD Q+P + + R ++
Sbjct: 257 MSLCDIAYVYGDTQQIPYI------NRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTH 310
Query: 661 FPNSYFYENKIHDSPTVEKRSYEKRFLPGPMYGPYSFINVFGGREEFIEHSCRNMVEVSV 720
F N + + + + EK+S + + G
Sbjct: 311 FLNQRYEGHVM--CTSSEKKSVSQEMVSG------------------------------- 337
Query: 721 VMKILLNLYKGWINSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSAGFAVKVMSVDGFQG 780
S + P ++ + ++ V +V QG
Sbjct: 338 ------------AASIN----PVSKPLKGKILTFTQSDKEALLSRGY--ADVHTVHEVQG 379
Query: 781 GEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCL 819
+ + VR + V V+L+R L
Sbjct: 380 ETYADVSL--VRLTPTPVSIIARDSPHVLVSLSRHTKSL 416
Score = 35.9 bits (82), Expect = 0.20
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASR 274
+++K+ S A V L+ G PG GKTK + + L+ P A + + R
Sbjct: 149 RLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVPGRQAAEMIRRR 203
Query: 275 V 275
Sbjct: 204 A 204
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 57.3 bits (138), Expect = 8e-08
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 1330 DIFESYEQMKMRNGEFDLADLVNDLHHRLKEES------YKGDEFHFVYIDEVQDLTMSQ 1383
+I E+ + K R GE D+++ L L+ ES F IDE QD Q
Sbjct: 334 EIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQ 393
Query: 1384 VALFKYVCKNIEEGFVFS-GDTAQTIARGIDFRFQ--DIRSLFYKKFVLESRNNGNDGRQ 1440
+F+ + + E + GD Q I + F+ DI + K
Sbjct: 394 YRIFRRIWHHQPETALLLIGDPKQAI-----YAFRGADIF-TYMKA-------------- 433
Query: 1441 EKRQLSDIFNLRQNFRTHVGVLNLAQSIIELLYRFFPHSVDILKPETSLIYGEPPILLES 1500
+ ++ + L N+R+ G++N + F P S + +
Sbjct: 434 -RSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFK 492
Query: 1501 GDEENAI 1507
G+ + A+
Sbjct: 493 GETQPAM 499
Score = 35.7 bits (82), Expect = 0.28
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 1551 VLTIVESKGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHN 1610
++TI +SKGLE+ ++ F + ++ Q Y + P ++
Sbjct: 738 IVTIHKSKGLEY-PLVWLPFITNFRVQEQAF----YHDRHSFEAVLDLNAAPESVDLAEA 792
Query: 1611 ILCSE-LKQLYVAITRTRQRLWIW 1633
+E L+ LYVA+TR+ +
Sbjct: 793 ERLAEDLRLLYVALTRSVWHCSLG 816
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double
strand DNA repair, protein-DNA CO hydrolase-DNA complex;
HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Length = 1232
Score = 49.2 bits (117), Expect = 2e-05
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 32/158 (20%)
Query: 1330 DIFESYEQMKMRNGEFDLADLVNDLHHRLKEESYKGDE------------FHFVYIDEVQ 1377
+ +E K D +DL + L E+ KG+ FH V +DE Q
Sbjct: 351 SYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQFHEVLVDEYQ 410
Query: 1378 DLTMSQVALFKYVCKNIEEG---FVFSGDTAQTIARGIDFRFQ--DIRSLFYKKFVLESR 1432
D + Q ++ + V EE F+ GD Q+I +RF+ + LF K+
Sbjct: 411 DTNLVQESILQLVTSGPEETGNLFMV-GDVKQSI-----YRFRLAEPL-LFLSKY----- 458
Query: 1433 NNGNDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIE 1470
+ +L +NFR+ +L+ + +
Sbjct: 459 ---KRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFK 493
Score = 41.1 bits (96), Expect = 0.006
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 1551 VLTIVESKGLEFQDVLLY---KFFSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSF--- 1604
++TI SKGLEF V + + F+ L + + E + S+P+
Sbjct: 790 LMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLI 849
Query: 1605 ---NEVKHNILCSELKQLYVAITRTRQRLWI 1632
+++ +L EL+ LYVA+TR +++L++
Sbjct: 850 AMKKKMRRELLSEELRVLYVALTRAKEKLFL 880
Score = 37.6 bits (87), Expect = 0.063
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 810 VALTRARHCLWILGNERTLTRNRSVWKALVDDAKAR---QCFFNADDDKDLGKSILEAKK 866
VALTRA+ L+++G+ + + + W+A + A D L +
Sbjct: 869 VALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHR 928
Query: 867 ELNELYELLNPGSTLFRSQRWKVNF 891
+L +L + R+ V
Sbjct: 929 DLGDLAGVPAHADISGHPARFAVQM 953
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 45.7 bits (108), Expect = 1e-04
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 13/125 (10%)
Query: 1697 LFYEQ-NYEMATICFEKAKDTYWEGRSK---ASGLKAAAD-RISSSNPLEARIILREAAK 1751
F E A + + + + RS A + A EA + +A+
Sbjct: 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Query: 1752 IFEAIGKVDSAAKCFFDMGE------YERAGTIYLERCEEPELEKAGECFSLAGCYKLAA 1805
++ G D+AA G+ +A +Y + E A A+
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAA--VFENEERLRQAAELIGKAS 162
Query: 1806 DVYAR 1810
+ R
Sbjct: 163 RLLVR 167
Score = 40.6 bits (95), Expect = 0.004
Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 26/128 (20%)
Query: 1696 WLFYEQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEA 1755
++ ++ +Y+ A + KA + K + +A+ + A+
Sbjct: 25 FMKWKPDYDSAASEYAKAAVAF-----KNAK-----------QLEQAKDAYLQEAEAHAN 68
Query: 1756 IGKVDSAAKCFFDMGEYERAGTIYLERCEEPE----LEKAGECFSLAGCYKLAADVYARG 1811
+ AAK +E+AG + + PE +EKA + G AA R
Sbjct: 69 NRSLFHAAKA------FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122
Query: 1812 SFLAECLD 1819
L E LD
Sbjct: 123 GKLMEPLD 130
Score = 39.1 bits (91), Expect = 0.013
Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 33/228 (14%)
Query: 1734 ISSSNPLEARIILREAAK-----IFEAIGKVDSAAKC-------FFDMGEYERAGTIYLE 1781
I++ EA + +A K + DSAA F + + E+A YL+
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 1782 RCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHA 1841
E F A ++ A + + E + K + ++
Sbjct: 62 EAE--AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK---------ASVMYVENG 110
Query: 1842 DTDVGRVKSSKEMKKI-----EQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLN 1896
D ++ + + D ++ L+ ++ + +A + L
Sbjct: 111 TPD----TAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166
Query: 1897 SKGCFDE-LLVLEEESESFMDAANIARLRGDILRTVDLLQKVGNFKEA 1943
+ FDE L++E + + N + V + ++ A
Sbjct: 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Length = 1166
Score = 43.2 bits (101), Expect = 0.001
Identities = 27/251 (10%), Positives = 75/251 (29%), Gaps = 36/251 (14%)
Query: 1226 FERF-HNIWKNYGQLQNS------KSVFIETIIRKKEVNYERFSSSY-WPHFNAQLARKL 1277
F R + ++ G + + + +I + + ++ + + F AQ+
Sbjct: 68 FSRLAWRVLQHTGGMSRPFLTSTGVQMLLRKLIEEHKQEFKVYQKASDKSGFTAQVE--- 124
Query: 1278 DPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVNLSETRNSSLSRQKRERIYDIFESYEQ 1337
+++ K E + SE R + +K + +++ E+
Sbjct: 125 -------RMLTEFKRYCLEPEDIRRMAESGTA---SEYRGERVLSEKLHDLSILYQQMEK 174
Query: 1338 MKMRNGEFDLADLVNDLHHRLKEESYKGDEFHFVYIDEVQDLTMSQVALFKY---VCKNI 1394
+ + D + L + + +Y+D T + + + ++I
Sbjct: 175 -SLADQYLHSEDYLTLLAEHIPLAEDI--KGAHIYVDGFYQFTPQEFRVLEQLMVHAEHI 231
Query: 1395 EEGFVFSGDTAQTIARGIDF-----RFQDIRSL--FYKKFVLESRNNGNDGRQEKRQLSD 1447
F + D + + L K+ L+ G + + +
Sbjct: 232 T--FSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGTERHTKTPE 289
Query: 1448 IFNLRQNFRTH 1458
+ +L +
Sbjct: 290 LAHLEAQYEAR 300
Score = 35.5 bits (81), Expect = 0.29
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 1085 FILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQET-EAEKDLEK 1134
F++GRSG+GKT ++I + + + F V + Q T E +L K
Sbjct: 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPD--QMTFLMEYELAK 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 42.7 bits (100), Expect = 0.002
Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 3/87 (3%)
Query: 203 RIWNSLHMKGNLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262
+ V + P G+GK+ V ++ LV
Sbjct: 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKV---PAAYAAQGYKVLVLN 264
Query: 263 PTIVAIKELASRVVKLVKESVERDCRD 289
P++ A + + K
Sbjct: 265 PSVAATLGFGAYMSKAHGIDPNIRTGV 291
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 41.2 bits (97), Expect = 0.005
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 218 KELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELA 272
+L +G + ++ G PGTGK+ T + + + +C PT A + L
Sbjct: 195 ASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLG 249
Score = 30.5 bits (69), Expect = 8.7
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 1058 DRDARELDLPFEVTDEQLD---MILFPRSTFILGRSGTGKTTVL--IMKLFQKEKL 1108
D A +++EQ + R + G GTGK+T + L + L
Sbjct: 178 DDWAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGL 233
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 40.2 bits (94), Expect = 0.009
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQM---KFRTLVCTPTIVAIKELASRVVKL 278
++ PG GKT+ L IL + + RTLV PT V + E+ L
Sbjct: 10 TTVLDFHPGAGKTRRF--LPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL 60
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR
genomics, PSI-2, midwest center for structural genomics;
HET: MSE; 1.66A {Lactobacillus plantarum}
Length = 174
Score = 38.2 bits (89), Expect = 0.014
Identities = 18/182 (9%), Positives = 48/182 (26%), Gaps = 59/182 (32%)
Query: 1468 IIELLYRFFPHSVDILKPETSLIYGEPPILLESGDEENAILKIFGNTGEVGGNMVGFGAE 1527
I + + + + G+ P ++ + + E + ++ ++ N
Sbjct: 11 ITDFTKEILVNGEAVTAFDRQ---GDLPNVVVTPNFEAGVDQV---VDQLAMNDSERDT- 63
Query: 1528 QVILVRDDCVRKEISNYVGKQAL-----------------VLTIVESKGLEFQDVLLYKF 1570
I+ + + ++ + + V+ +KGLEF V+++
Sbjct: 64 TAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVW-- 121
Query: 1571 FSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRL 1630
+ E + LY +R L
Sbjct: 122 --------------------NANQENYQRE-------------DERQLLYTICSRAMHEL 148
Query: 1631 WI 1632
+
Sbjct: 149 TL 150
Score = 33.2 bits (76), Expect = 0.66
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 734 NSKEKLSIGIVSPYIAQVAAIQEKLGSKYVNSA---------GFAVKVMSVDGFQGGEED 784
N E+ + I+ +A+ A+ + L ++ V V+ +G E D
Sbjct: 57 NDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFD 116
Query: 785 IIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWIL 822
+I+ N + + +RA H L ++
Sbjct: 117 AVIVWNANQENYQRE---DERQLLYTICSRAMHELTLV 151
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid,
hydrolase, structural genomics, NPPSFA; NMR {Thermus
thermophilus}
Length = 89
Score = 35.9 bits (83), Expect = 0.018
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 887 WKVNFSDNFLKSFRKLTSDQTKKLVINLLLKLASGWRPEKRKVDSVCGSSLHIIKQFKVE 946
+++ F K KL + + ++ L + + + + + G L +++V
Sbjct: 3 YRIEFDPRAEKELEKL-DREVARRILRFLRERVATLEDPRSLGEPLRGPELGRFWKYRVG 61
Query: 947 GFYIICTID 955
+ +IC I
Sbjct: 62 DYRLICHIQ 70
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type ATPase,
WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi}
PDB: 3euk_A*
Length = 483
Score = 38.7 bits (89), Expect = 0.025
Identities = 40/337 (11%), Positives = 95/337 (28%), Gaps = 40/337 (11%)
Query: 1076 DMILFPRSTFILGRSGTGKTTVL---IMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDL 1132
T + G +G GK+T + + L L N G +SS++ L
Sbjct: 24 TFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83
Query: 1133 EKTERVILRQLFVTVSPKLCFAVKQHISHMKSSTIGGKF----ATEGSLIDTDDIDDAEK 1188
+ + + + + ++ V+ + + + + +
Sbjct: 84 KAGVCYAVLETVNSRAQRIITGVRLQQIAGRDKKVDIRPFSLQNVPMTDSVISLFTEQVA 143
Query: 1189 LKDIPNSFIDIPAKSYPLVITFHKFLMMLDGTLCNSYFERFHNIWKNYGQLQNSK----- 1243
K S D+ K +TF + + Y ++ +L++S
Sbjct: 144 NKARVLSLNDLKEKFEETAVTFKPYHSI------TDYHSFMFDLGILPKRLRSSSDRNKF 197
Query: 1244 -SVFIETIIRKKEVNYERFSSSYWPHFNAQLARKLDPSR------------------VFT 1284
+ ++ + Y N+ + + V
Sbjct: 198 YKLIEASLYGGISSVITKSLRDYLLPENSGVRQAFQDMEAALRENSGGSGGSISAESVAN 257
Query: 1285 EIISHIKGGLQSIEVVNGKLNREDYVNLSETRNSSLSRQKRERIYDIF-ESYEQMKM--R 1341
+ I+ I +N L + + R R + + + +EQ K
Sbjct: 258 ILRKTIQREQNRILQLNQGLQNIAFGQVKGVRLVVNIRDTHSILLNALSDQHEQHKDLFE 317
Query: 1342 NGEFDLADLVNDLHHRLKEESYKGDEFHFVYIDEVQD 1378
+ + ++ + L+ R+ G +E+ D
Sbjct: 318 SQKLSFSEALAMLYKRINPHIELGQRMPQTIGEELLD 354
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat,
protein transport; 2.90A {Saccharomyces cerevisiae} SCOP:
a.118.8.1
Length = 292
Score = 36.5 bits (84), Expect = 0.097
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 18/109 (16%)
Query: 1700 EQNYEMATICFEKAKDTYWEGRSKASGLKAAADRISSSNPLEARIILREAAKIFEAIGKV 1759
+E A +A Y + A +AA + G
Sbjct: 30 SYKFEEAADLCVQAATIYRLRK----------------ELNLAGDSFLKAADYQKKAGNE 73
Query: 1760 DSAAKCFFDMGEYERAGTIYLERCEEPELEKAGECFSLAGCYKLAADVY 1808
D A + + + ++G + LE A + F+ G ++ A+
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVN--AVDSLENAIQIFTHRGQFRRGANFK 120
Score = 35.0 bits (80), Expect = 0.29
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 1722 SKASGLKAAAD-RISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYL 1780
S L A+ + S+ ++ K EA AA + E AG +L
Sbjct: 2 SDPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFL 61
Query: 1781 ERCEEPELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSK 1823
+ + +KAG Y A + G +D
Sbjct: 62 KAAD--YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 36.6 bits (85), Expect = 0.13
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQM----KFRTLVCTPT 264
+ +I G PGTGKT TV+ LL L+QM + R + PT
Sbjct: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 36.4 bits (84), Expect = 0.14
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 229 VQLIWGPPGTGK-TKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKL 278
+ ++ PG GK + + ++ L + RTL+ PT V E+ + L
Sbjct: 21 LTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 36.0 bits (83), Expect = 0.16
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKEL-AS--RVVKLVKESV 283
+++GPPG GKT + ++ ++ + L E AS R L+ V
Sbjct: 81 MLYGPPGIGKT---TAAHLVAQELGYDIL----------EQNASDVRSKTLLNAGV 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 35.0 bits (80), Expect = 0.36
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQM-KFRTLVCTPT 264
I GP GTG T ++ L+ + ++ PT
Sbjct: 43 EKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83
Score = 32.3 bits (73), Expect = 2.7
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 1068 FEVTDEQ-------LDMILFPRSTFIL-GRSGTGKTTVL--IMKLFQKEKLHNMAL 1113
++T+ Q + I + + G +GTG TT+ I++ + L
Sbjct: 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 35.4 bits (81), Expect = 0.36
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 1803 LAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFL 1862
LA Y RG E ++VC++ LF +Y+ + D ++ +
Sbjct: 916 LACVAYERGQCDLELINVCNENSLFKSLSRYL---VRRKDPELWGSVLLESNPYRRPLID 972
Query: 1863 QSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGCFDELLVLEEESESFMDAANIAR 1922
Q + D + + V+AF + DL + L + ++ F + N+
Sbjct: 973 QVVQTALSETQDPEEVSVTVKAFMTADLPNE------LIELLEKIVLDNSVFSEHRNLQN 1026
Query: 1923 L------RGDILRTVDLLQKVGNF 1940
L + D R ++ + ++ N+
Sbjct: 1027 LLILTAIKADRTRVMEYINRLDNY 1050
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 34.7 bits (79), Expect = 0.44
Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 13/167 (7%)
Query: 1081 PRSTFILGRSGTGKTTVL--IMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERV 1138
S LG +GTGKT V I ++ K + + + +E + T +
Sbjct: 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE------VGGTPQA 98
Query: 1139 ILRQLFVTVSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFID 1198
+L L ++ ++ I ++I D++D K +
Sbjct: 99 VLSSLAGKLTGFSVPKHGINLGEYIDK-IKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQ 157
Query: 1199 IPAKSYPLVITF----HKFLMMLDGTLCNSYFERFHNIWKNYGQLQN 1241
+ + + ++ + +S + QL+
Sbjct: 158 LLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204
Score = 32.0 bits (72), Expect = 2.8
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLL 248
I+ + + + L G GTGKT +
Sbjct: 34 IAIRYFVKNEVKFSN-LFLGLTGTGKTFVSKYIF 66
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 34.4 bits (80), Expect = 0.49
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 233 WGPPGTGKTKTVSMLLVILLQMKFRTL 259
WGPPGTGKT T++ ++ +
Sbjct: 56 WGPPGTGKT-TLAEVIARYANADVERI 81
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 34.4 bits (80), Expect = 0.60
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 28/153 (18%)
Query: 1325 RERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKE-----ESYKGDEFHFVYIDEVQDL 1379
+ + D+++ Y+Q +RN D DL+ Y+ +F +++IDE QD
Sbjct: 170 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQ-YKFQYIHIDEYQDT 228
Query: 1380 TMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSL--FYKKFVLESRNNGND 1437
+Q L K + + + GD Q+I R +R DI+++ F + + +
Sbjct: 229 NRAQYTLVKKLAERFQNICAV-GDADQSIYR---WRGADIQNILSFERDY--------PN 276
Query: 1438 GRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIE 1470
+ + L QN+R+ +L A +IE
Sbjct: 277 AK--------VILLEQNYRSTKRILQAANEVIE 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.0 bits (72), Expect = 1.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 1085 FILGRSGTGKTTVLIMKLFQKEKLHNMALEGFF 1117
F+ G G GKTT LI K + K + ++GF+
Sbjct: 5 FLTGPPGVGKTT-LIHKASEVLKSSGVPVDGFY 36
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.7 bits (74), Expect = 1.6
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLL 248
I+ L + + I+G GTGKT V +L
Sbjct: 34 SILAPLYREEKPNNI-FIYGLTGTGKTAVVKFVL 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 32.5 bits (74), Expect = 1.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 231 LIWGPPGTGKT 241
IWG G GK+
Sbjct: 40 GIWGGKGQGKS 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 32.9 bits (75), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 229 VQLIWGPPGTGK-TKTVSMLLVILLQMKFRTLVCTPTIVAIKELASR 274
+ ++ PG+GK K + ++ +Q + RT V PT V E+A
Sbjct: 23 MTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEA 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 32.1 bits (72), Expect = 2.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 231 LIWGPPGTGKTKTVSMLL 248
+ G PGTGKT T+ L
Sbjct: 48 TLLGRPGTGKTVTLRKLW 65
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 32.2 bits (73), Expect = 2.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLV 260
L+ G GTGK+ + L L R ++
Sbjct: 57 LVNGATGTGKSVLLRELAYTGLLRGDRMVI 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 31.4 bits (72), Expect = 3.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 231 LIWGPPGTGKT 241
L+ GPPG GKT
Sbjct: 48 LLAGPPGCGKT 58
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
bioinsecticicide, pore formation, receptor recognition,
sporulation; 2.8A {Bacillus thuringiensis}
Length = 612
Score = 31.8 bits (71), Expect = 3.3
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 23/143 (16%)
Query: 2374 YLIERLLILLSSLKGCIVTTKSSFVDWLIYQEWSTNPTSSLFTDLHQSFGAVYEFIFNIV 2433
I +L+ I T + + W NP D+ V+ N++
Sbjct: 65 TYISNANKILNRSFNVISTYHNHL------KTWENNPNPQNTQDVRTQIQLVHYHFQNVI 118
Query: 2434 QQFLYSEKETMEWIKKSCTEIKDYHSLVVLRLFVIVCLLHLN-------FGNSLNLLVDL 2486
+ + S ++++VL + LHL F L
Sbjct: 119 PELVNSCPPNPSDCDY--------YNILVLSSYAQAANLHLTVLNQAVKFEAYLKNNRQF 170
Query: 2487 LGRINITKKLSWEFYDALRRRRK 2509
+ + ++Y L + +
Sbjct: 171 DYLEPLPTAI--DYYPVLTKAIE 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 31.5 bits (72), Expect = 3.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 231 LIWGPPGTGKT 241
L +GPPG GKT
Sbjct: 53 LFYGPPGCGKT 63
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A*
2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 31.7 bits (73), Expect = 3.8
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 1325 RERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKE-----ESYKGDEFHFVYIDEVQDL 1379
+ ++++Y++ R G D A+L+ H + Y+ + F + +DE QD
Sbjct: 167 EQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYR-ERFTNILVDEFQDT 225
Query: 1380 TMSQVALFKYVCKNIEEGFVFSGDTAQTI 1408
Q A + + + + + GD Q+I
Sbjct: 226 NNIQYAWIRLLAGDTGKVMIV-GDDDQSI 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 30.8 bits (70), Expect = 3.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPT 264
+++ L G + + G PG+GK+ T+S L L + P
Sbjct: 10 GVLERLDPRQPGRQLVALSGAPGSGKS-TLSNPLAAALSAQGLPAEVVPM 58
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat,
type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 30.3 bits (68), Expect = 4.3
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 17/103 (16%)
Query: 1746 LREAAKIFEAIGKVDSA--------AKCFFDMGEYERAGTIYLERCE-EPELEKA----G 1792
L + ++ S A + G YE A ++ C + + G
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 1793 ECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYIS 1835
C G Y LA Y+ +D+ F +
Sbjct: 63 ACRQAMGQYDLAIHSYSY----GAVMDIXEPRFPFHAAECLLQ 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 30.3 bits (69), Expect = 6.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLV 260
L GPPGTGKT T L L +R
Sbjct: 42 LFSGPPGTGKTATAIALARDLFGENWRDNF 71
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death
domains, plastic interfaces, apoptosis; HET: EPE; 2.00A
{Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A
1ygo_A
Length = 108
Score = 29.1 bits (65), Expect = 6.5
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 1272 QLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVNLSETRN--SSLSRQKRERIY 1329
QL LD V+ ++ + +K +E +++ + S + + Q +
Sbjct: 23 QLCAHLDALDVWQQLATAVKLYPDQVE----QISSQKQRGRSASNEFLNIWGGQYNHTVQ 78
Query: 1330 DIFESYEQMKMRNGEFDLADLVNDLHHRL 1358
+F ++++K+ N + D V++ H+
Sbjct: 79 TLFALFKKLKLHNAMRLIKDYVSEDLHKY 107
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 30.9 bits (70), Expect = 6.7
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263
+ GPPG K+ L + + T
Sbjct: 45 FLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 77
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 30.6 bits (69), Expect = 7.1
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKF----RTLVCTPTIVAIKELASRV 275
+ ++ PG GKT +L L++ RT++ PT V E+ +
Sbjct: 4 LTVLDLHPGAGKT-RR--VLPQLVREAVKKRLRTVILAPTRVVASEMYEAL 51
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 30.9 bits (70), Expect = 7.1
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 231 LIWGPPGTGKT 241
L++GPPGTGKT
Sbjct: 242 LLYGPPGTGKT 252
Score = 30.9 bits (70), Expect = 7.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 231 LIWGPPGTGKT 241
L +GPPG GKT
Sbjct: 515 LFYGPPGCGKT 525
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 30.9 bits (69), Expect = 7.9
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 460 GEDNFHVMATLISLLDSFETLLFEDNLVSEELEELLSHSVDEDLSESIVDIKYL------ 513
E+N ++ L+ L + F D E + +D D E++ + ++
Sbjct: 48 FENNTNMFQILLHGLKVW----FTDLGQETVFNEDPNAFIDVDFLENVQSLSHVNEPFTR 103
Query: 514 -LHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLEDLLK 551
R+ R LL S N S +E LL D+++
Sbjct: 104 TNFAIRANSLHQSRVLLHSTNRK--ASKLENLLLVDIIQ 140
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio,
structural genomics, PSI-2, prote structure initiative;
2.00A {Mycobacterium tuberculosis}
Length = 102
Score = 28.6 bits (64), Expect = 8.9
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 885 QRWKVNFSDNFLKSFRKLTSDQTKKLVINLLLKLASGWRPEKRKVDSVCGSSLHIIKQFK 944
+ V F+ + KL + V+ S E +V L +
Sbjct: 16 VPYTVRFTTTARRDLHKL-PPRILAAVVEFAFGDLSR---EPLRVGKPLRRELAGTFSAR 71
Query: 945 VEGFYIICTIDIVKESKYFQVLKV 968
+ ++ ID E +L+V
Sbjct: 72 RGTYRLLYRID--DEHTTVVILRV 93
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 30.4 bits (68), Expect = 9.1
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELAS 273
+++K+L+ G V + G GK+ L+ ++ R +V P + LA
Sbjct: 181 QQLLKQLMTMPPG--VAAVTAARGRGKSALAGQLIS---RIAGRAIVTAPAKASTDVLAQ 235
Query: 274 RVVK 277
+
Sbjct: 236 FAGE 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 39,328,201
Number of extensions: 2442301
Number of successful extensions: 5521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5410
Number of HSP's successfully gapped: 117
Length of query: 2576
Length of database: 6,701,793
Length adjustment: 110
Effective length of query: 2466
Effective length of database: 3,630,483
Effective search space: 8952771078
Effective search space used: 8952771078
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.8 bits)