RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000053
(2576 letters)
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB),
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 485
Score = 64.0 bits (154), Expect = 1e-10
Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 30/270 (11%)
Query: 1221 LCNSYFERFHNIWKNYGQLQNSKSVFIETIIRKKEVNYERFSSSYWPHFNAQLARKLDPS 1280
R + + + IE+ + + + +A + +
Sbjct: 221 RHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSY 280
Query: 1281 RVFTEIISHIKGGLQSIEVVNGKLNREDYV----NLSETRNSSLSRQKRERIYDIFESYE 1336
++ + + L+ G+ R L S + +I E+
Sbjct: 281 QLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA 340
Query: 1337 QMKMRNGEFDLADLVNDLHHRLKEESYK------GDEFHFVYIDEVQDLTMSQVALFKYV 1390
+ K R GE D+++ L L+ ES + F IDE QD Q +F+ +
Sbjct: 341 REKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400
Query: 1391 CKNIEEGFVFS-GDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGNDGRQEKRQLSDIF 1449
+ E + GD Q I FR DI + + + ++ +
Sbjct: 401 WHHQPETALLLIGDPKQAIYA---FRGADIFTYM----------------KARSEVHAHY 441
Query: 1450 NLRQNFRTHVGVLNLAQSIIELLYRFFPHS 1479
L N+R+ G++N + F
Sbjct: 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471
Score = 39.7 bits (91), Expect = 0.005
Identities = 65/466 (13%), Positives = 125/466 (26%), Gaps = 42/466 (9%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRT------------LVCTPTIVAIKELASRVV 276
+LI GTGKT T++ L + LL + LV T T A EL R+
Sbjct: 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIR 77
Query: 277 KLVKESVERDCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWS 336
+ E R+ PL E LL +++ + + +
Sbjct: 78 SNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137
Query: 337 HCFASMVEFLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFV 396
+ A L + +E + + + L +
Sbjct: 138 NLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDI 197
Query: 397 RERFK---CIINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTH 453
+ +I ++ I + R+ + A + S +
Sbjct: 198 NRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKF 257
Query: 454 IPKCYIGEDNFHVMATLISLLDSFETLLFEDNLVSEELEELLSHSVDEDLSESIVDIKYL 513
+ + A +S++ + LE+ + I L
Sbjct: 258 NRS-NQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQL 316
Query: 514 LHKRRSECHFVLRKLLSSFNELNLPSAVEKDLLE-DLLKRFCLKRASLFFSTASSSYMLH 572
L + S V+ + L+ E V ++ L + + S +L
Sbjct: 317 LAEPLSIRDLVITRALAEIRE-----TVAREKRRRGELGFDDMLSRLDSALRSESGEVLA 371
Query: 573 SVAMKPLNFLVIDEAAQLKESESTIPLQLSG-IKHAVLF--GDECQLPAMVESKVSDEAC 629
+ +IDE + I ++ L GD Q A
Sbjct: 372 AAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ------------AI 419
Query: 630 FG-----RSLFERLSHLRHSKHLLSIQYRMHPSISFFPNSYFYENK 670
+ + + H+ + L +R P + N F +
Sbjct: 420 YAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTD 465
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 49.0 bits (115), Expect = 4e-06
Identities = 23/243 (9%), Positives = 61/243 (25%), Gaps = 24/243 (9%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKF----RTLVCTPTIVAIKELASRVVKLVKESVERD 286
L+ G+GKT+ ++ + L++ T T A +E+ RV + + R
Sbjct: 18 LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 77
Query: 287 CRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVEFL 346
+ F LG ++ L + + ++ L + L +
Sbjct: 78 LMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLIST 137
Query: 347 DNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCIING 406
+ + A + F +
Sbjct: 138 ISNWKNDLKTPSQAAA--------------------SAIGERDRIFAHCYGLYDAHLKAC 177
Query: 407 DIIKEKECGKEADASDVEIKPFLEFVRERFKCIAAPLRSCIFNFCTHIPKCYIGEDNFHV 466
+++ + + + + + + + + K +G
Sbjct: 178 NVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFT 237
Query: 467 MAT 469
+
Sbjct: 238 VVG 240
Score = 30.1 bits (66), Expect = 4.0
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 1368 FHFVYIDEVQDLTMSQVALFKYVCKNIEEGF-VFSGDTAQTIARGIDFRFQDIRSLFYKK 1426
++ +DE QD SQ L K + + V D + RG + L +
Sbjct: 207 IRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQ---NLVLLSQD 263
Query: 1427 FVLESRNNGNDGRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIE 1470
F + L QN+R+ +L A +I
Sbjct: 264 F----------------PALKVIKLEQNYRSSGRILKAANILIA 291
Score = 28.9 bits (63), Expect = 9.0
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1071 TDEQLDMILFP-RSTFILGRSGTGKTTVLIMKL 1102
Q + F +L +G+GKT V+ K+
Sbjct: 3 NPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKI 35
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 43.9 bits (102), Expect = 2e-04
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 1322 RQKRERIYDIFESYEQMKMRNGEFDLADLVNDLHHRLKEES----YKGDEFHFVYIDEVQ 1377
+ + D+++ Y+Q +RN D DL+ Y +F +++IDE Q
Sbjct: 167 TYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQ 226
Query: 1378 DLTMSQVALFKYVCKNIEEGFVFSGDTAQTIARGIDFRFQDIRSLFYKKFVLESRNNGND 1437
D +Q L K + + + GD Q+I R +R DI+++ L + +
Sbjct: 227 DTNRAQYTLVKKLAERFQ-NICAVGDADQSIYR---WRGADIQNI------LSFERDYPN 276
Query: 1438 GRQEKRQLSDIFNLRQNFRTHVGVLNLAQSIIE 1470
+ + L QN+R+ +L A +IE
Sbjct: 277 AK--------VILLEQNYRSTKRILQAANEVIE 301
Score = 35.0 bits (79), Expect = 0.095
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 9/155 (5%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMK----FRTLVCTPTIVAIKELASRVVKLVKESVERD 286
LI G+GKT+ ++ + L+ K + L T T A +E+ RV L+ + E
Sbjct: 28 LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87
Query: 287 CRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCF--ASMVE 344
F + +L + +R+ ++ + ++ + F +++
Sbjct: 88 WIST-FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILG 146
Query: 345 FLDNCVSQYHTYME--NESMKQSEDINGDIIKEKE 377
+ ++ + + E + D+ +E +
Sbjct: 147 TISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQ 181
Score = 30.4 bits (67), Expect = 2.6
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1071 TDEQLDMILFPRST-FILGRSGTGKTTVLIMKL 1102
EQ + + I+ +G+GKT VL ++
Sbjct: 13 NKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRI 45
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 37.9 bits (87), Expect = 0.003
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDC 287
V + P G+GK+ + ++ LV P++ A + + K
Sbjct: 10 VAHLHAPTGSGKST---KVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRT 65
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 395
Score = 39.6 bits (91), Expect = 0.004
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 1534 DDCVRKEISNYVGKQALVLTIVESKGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLL 1593
+ ++ ++TI +SKGLE+ V L F + ++ Q + E L
Sbjct: 236 NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP-FITNFRVQEQAFYHDRHSFEAVLD 294
Query: 1594 DSTSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIW 1633
+ +P S + + L +L+ LYVA+TR+ +
Sbjct: 295 LNAAP---ESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 331
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 39.1 bits (90), Expect = 0.005
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 231 LIWGPPGTGKTKTVSM-LLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRD 289
++ PG GKTK ++ ++ RTL+ PT V E+ + L R
Sbjct: 13 IMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRA 72
Score = 28.7 bits (63), Expect = 9.8
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 1076 DMILFPRSTFILGRSGTGKTTVLIMKLFQK 1105
D+ R T + G GKT + + ++
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRYLPAIVRE 33
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 38.8 bits (89), Expect = 0.006
Identities = 32/271 (11%), Positives = 67/271 (24%), Gaps = 24/271 (8%)
Query: 1727 LKAAADRISSSNPLEARIILREAAKIFEAIGKVDSAAKCFFDMGEYERAGTIYLERCEEP 1786
LK A + S+ ++ K EA AA + E AG +L+ +
Sbjct: 8 LKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAAD-- 65
Query: 1787 ELEKAGECFSLAGCYKLAADVYARGSFLAECLDVCSKGKLFDIGLQYISYWKQHADTDVG 1846
+KAG Y A + G +D
Sbjct: 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125
Query: 1847 RVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRAFHSMDLIRNFLNSKGCFDELLV 1906
+++ D + + + + G + E
Sbjct: 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSN------KCFIKCADLKALDGQYIEASD 179
Query: 1907 LEEE---------------SESFMDAANIARLRGDILRTVDLLQKVGNFKEACNLTLNYV 1951
+ + + F+ D + LQ+ + +
Sbjct: 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239
Query: 1952 LSNSLWSSGSKGWPLKQFTQKKELLEKAKLL 1982
SL + ++G +Q ++ + + L
Sbjct: 240 FLKSLIDAVNEG-DSEQLSEHCKEFDNFMRL 269
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 38.4 bits (88), Expect = 0.012
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKF----RTLVCTPTIVAIKELASRVVKLVKESVER 285
LI G+GKT+ ++ + L+ K L T T A +E+ RV L+ + E
Sbjct: 28 LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAED 86
Score = 37.6 bits (86), Expect = 0.022
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 41/136 (30%)
Query: 1498 LESGDEENAILKIFGNTGEVGGNMVGFGAEQVILVRDDCVRKEISNYVGKQALVLTIVES 1557
LE+ DE ++ K F N + +++ F + L+ D V ++T+ +
Sbjct: 494 LENLDEFLSVTKHFENVSD-DKSLIAF-LTDLALISGDAVM------------LMTLHAA 539
Query: 1558 KGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEVKH-NILCSEL 1616
KGLEF V L G FP ++ + + E
Sbjct: 540 KGLEFPVVFLI--------------------------GMEEGIFPHNRSLEDDDEMEEER 573
Query: 1617 KQLYVAITRTRQRLWI 1632
+ YV ITR + L +
Sbjct: 574 RLAYVGITRAEEELVL 589
Score = 30.7 bits (68), Expect = 3.1
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 769 AVKVMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNP------RRV-NVALTRARHCLWI 821
AV +M++ +G E ++ + + + + RR+ V +TRA L +
Sbjct: 530 AVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVL 589
Query: 822 LGNERTLTRNRSVWKALVDDAKAR 845
T + R+++ + D +R
Sbjct: 590 -----TSAQMRTLFGNIQMDPPSR 608
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 37.3 bits (85), Expect = 0.017
Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 30/239 (12%)
Query: 234 GPPGTGKTKTVSMLLVILLQMKFRTLVCT-------PTIVAIKELASRVVKLVKESVERD 286
G G GKT + + V L M F + T + +V ++
Sbjct: 27 GKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNNLQVSRIDPHEETER 86
Query: 287 CRDALFFPLGEILLLGNNERLKVD---SGVEEIYLDYRVKRLADCF--------APLTGW 335
R + G+ L L+ D EEI + R+ TG
Sbjct: 87 YRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGH 146
Query: 336 SHCF----ASMVEFLDNCVSQYHTYMENESMKQSEDINGDII---KEKECGKEADASDVE 388
+ + + + + + + Q + ++ E EA
Sbjct: 147 TLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANL--- 203
Query: 389 IKPFLEFVRERFKCIINGDIIKEKECGKEADASDVEIKPFLEFVRERF--KCIAAPLRS 445
+ IIN + + P +E V+ + + P+ +
Sbjct: 204 QADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHASRVALVPVLA 262
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 36.4 bits (83), Expect = 0.045
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 524 VLRKLLSSFNELNLPSAVEKDLLEDLLKRFCLKRASLFFSTASSSYMLHSVAMKPLNFLV 583
+ L + +L L +K + ED L S H+ L+ LV
Sbjct: 211 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG----AQPGSQRLRHHAGNPLHLDVLV 266
Query: 584 IDEAAQLKESESTIPLQ-LSGIKHAVLFGDECQLPAMVESKVSDEACFGRSLFERLSHLR 642
+DEA+ + + + L + GD QL ++ V + +
Sbjct: 267 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL------GDICAYANAGF 320
Query: 643 HSKHLLSIQYRMHPSISFFPNSYFYENKIHDSPTVEKRSY 682
++ + + + + DS + ++SY
Sbjct: 321 TAERARQLSRLTGTHVPAGTGTEA--ASLRDSLCLLQKSY 358
Score = 32.2 bits (72), Expect = 0.78
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 229 VQLIWGPPGTGKTKTVSMLLVILLQM----KFRTLVCTPTIVAIKELASRVVKLVKE 281
+ +I G PGTGKT TV+ LL L+QM + R + PT A L + K +++
Sbjct: 165 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 221
>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 246
Score = 35.5 bits (81), Expect = 0.064
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 772 VMSVDGFQGGEEDIIIISTVRSNNGGSIGFISNPRRVNVALTRARHCLWILGNERTLTR 830
M+V QG E D + + V A+TRAR L + +ER L+
Sbjct: 175 AMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTAVTRARRRLSLYADERILSA 228
Score = 34.0 bits (77), Expect = 0.18
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 1595 STSPGSFPSFNEVKHNILCSELKQLYVAITRTRQRLWIWENKEEFSK 1641
S + + ++ EL +Y A+TR R+RL ++ ++ S
Sbjct: 184 SEFDHAALILPSQRTPVVTREL--VYTAVTRARRRLSLYADERILSA 228
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 333
Score = 35.1 bits (79), Expect = 0.096
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1599 GSFPSFNEVKHNILCSELKQLYVAITRTRQRLWI 1632
G P + + + + E + YV ITR ++ L
Sbjct: 269 GFLPHQSSIDEDNIDEERRLAYVGITRAQKELTF 302
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.53
Identities = 15/136 (11%), Positives = 40/136 (29%), Gaps = 8/136 (5%)
Query: 1086 ILGRSGTGKTTV---LIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQ 1142
SGTGKTT+ LI L + + ++ ++ + +
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT--- 63
Query: 1143 LFVTVSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAK 1202
+ S + + + + + S +D ++ + + A
Sbjct: 64 --IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 121
Query: 1203 SYPLVITFHKFLMMLD 1218
P + + ++ +
Sbjct: 122 HRPEELVIDRHVIAVA 137
>d2qfka1 a.1.1.2 (A:1-137) Dehaloperoxidase {Amphitrite ornata [TaxId:
129555]}
Length = 137
Score = 31.2 bits (70), Expect = 0.60
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 7/99 (7%)
Query: 1825 KLFDIGLQYISYWKQHADTDVGRVKSSKEMKKIEQDFLQSCALHFHKLNDNKSMMKFVRA 1884
+ Y+K + +KS + + + D +
Sbjct: 23 AFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANT 82
Query: 1885 FHSMDLIR-----NFLNSKGCFDELLVLEEESESFMDAA 1918
M NF E + +SF +
Sbjct: 83 LVQMKQHSSLTTGNFEKLFVALVE--YMRASGQSFDSQS 119
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 32.1 bits (72), Expect = 0.95
Identities = 31/246 (12%), Positives = 68/246 (27%), Gaps = 22/246 (8%)
Query: 1888 MDLIRNFLNSKGCFDELLVLEEESESFMDAANIARLRGDILRTVDLLQKVGNFKEACNLT 1947
+ + LL EE + + + I + + + + N+T
Sbjct: 129 RHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARDNGPGHNIT 188
Query: 1948 LNYVLSNSLWSSGSKGWPLKQFTQKKELLEKAKLLAKNESNKFYNFVCTEADILSNDQSD 2007
W G +E A+ L ES+ + +E + D
Sbjct: 189 FQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKED 248
Query: 2008 LLIMNQQLNASKRHQSVNGETLSARKILDFHLHTISSKYVWEDEYVLVEKICN------- 2060
I + L RH + N + I+ + + + + ++
Sbjct: 249 KEINSPNLLKMIRH-TTNLTLWFEKCIV--ETENLEERVAVVSRIIEILQVFQELNNFNG 305
Query: 2061 --------NRISVQTLIYFWNCWKDKIVNVLKYLECLKSQNFNDYR----SYGDFCLNYL 2108
N V L + + + +L+ L ++ Y S C+ +
Sbjct: 306 VLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFF 365
Query: 2109 GVWRQY 2114
G++
Sbjct: 366 GIYLTN 371
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 31.3 bits (69), Expect = 1.3
Identities = 18/146 (12%), Positives = 39/146 (26%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDA 290
+++GPPG GKT ++ L + + V +
Sbjct: 56 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 291 LFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVEFLDNCV 350
L + + + SG + + + PL + + V
Sbjct: 116 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 175
Query: 351 SQYHTYMENESMKQSEDINGDIIKEK 376
+ ++ + I+EK
Sbjct: 176 CLDIQFRRPDANSIKSRLMTIAIREK 201
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.1 bits (69), Expect = 1.3
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQM--KFRTLVCTPTIVAIKELASRVVKL 278
+ GPPG GKT + +L + + VV L
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTL 54
Score = 30.0 bits (66), Expect = 3.0
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 1082 RSTFILGRSGTGKTTVLIMKLFQK 1105
R F+ G G GKTT LI K +
Sbjct: 2 RHVFLTGPPGVGKTT-LIHKASEV 24
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.4 bits (70), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP 263
L+ G GTGK+ + L L R ++ P
Sbjct: 54 LVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.9 bits (68), Expect = 1.6
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 8/184 (4%)
Query: 225 SGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVE 284
+G V I G +GKT T++ L L+ + ++ I E A R + E
Sbjct: 20 AGRLVLGIDGLSRSGKT-TLANQLSQTLREQGISVCVFHMDDHIVERAKR---YHTGNEE 75
Query: 285 RDCRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVE 344
L + + L +LK + + D+ + L+ V
Sbjct: 76 WFEYYYLQWDVEW-LTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVF 134
Query: 345 FLDNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKP-FLEFV--RERFK 401
+ ++ + + + K+ ++ + + +LE +R
Sbjct: 135 LQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRAD 194
Query: 402 CIIN 405
+ +
Sbjct: 195 VVFD 198
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 31.1 bits (69), Expect = 1.8
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDA 290
L++G GTGK+ V L +L +++ + P E+ ++ +V R
Sbjct: 32 LVFGDRGTGKSTAVRALAALLPEIEA--VEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89
Query: 291 LFFPLG 296
+ PLG
Sbjct: 90 VDLPLG 95
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 333
Score = 30.9 bits (68), Expect = 1.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1615 ELKQLYVAITRTRQRLWI 1632
E + YV ITR + L +
Sbjct: 282 ERRLAYVGITRAEEELVL 299
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.5 bits (68), Expect = 2.3
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 218 KELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCT 262
+ + D V ++ G GTGK T L + F+ +
Sbjct: 3 EPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG 47
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 102
Score = 28.7 bits (64), Expect = 2.5
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 1272 QLARKLDPSRVFTEIISHIKGGLQSIEVVNGKLNREDYVNLSETRN--SSLSRQKRERIY 1329
QL LD V+ ++ + +K +E ++ + R S + + Q +
Sbjct: 17 QLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGR----SASNEFLNIWGGQYNHTVQ 72
Query: 1330 DIFESYEQMKMRNGEFDLADLVNDLHHRL 1358
+F ++++K+ N + D V++ H+
Sbjct: 73 TLFALFKKLKLHNAMRLIKDYVSEDLHKY 101
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
(RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 470
Score = 30.8 bits (68), Expect = 2.8
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 1200 PAKSYPLVITFHKFLMMLDGTLCNSYFERFHNI------WKNYGQLQNSKSVFIETIIRK 1253
P +S P + L M DG ++ + + + + +F+E +I
Sbjct: 319 PMRSIPFKVVC--LLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISA 376
Query: 1254 KEVNYERFSSSYWPHFNAQLARKLDPSRVFTEIISHIKGGLQSIE 1298
++ Y + + Q + PS + E+I +I
Sbjct: 377 QQKLY-----ISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPG 416
Score = 29.2 bits (64), Expect = 6.8
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 21/89 (23%)
Query: 1548 QALVLTIVESKGLEFQDVLLYKFFSASPLKNQWRVVYEYMKEQDLLDSTSPGSFPSFNEV 1607
+ T++ + + F+ V L M + +P F ++
Sbjct: 311 PVNICTLMPMRSIPFKVVCLL-----------------GMNDGVYPRQLAPLGFDLMSQK 353
Query: 1608 KHNILCSELKQ----LYVAITRTRQRLWI 1632
S A+ +Q+L+I
Sbjct: 354 PKRGDRSRRDDDRYLFLEALISAQQKLYI 382
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
{Escherichia coli [TaxId: 562]}
Length = 267
Score = 30.3 bits (68), Expect = 2.9
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 1880 KFVRAFHSMDLIRNFLNSKGCFDELLVLEEESESFMDAANIARLRGDILRTVDLLQKVGN 1939
F++ F S+ L+ +L S + L + E + A +A + +K
Sbjct: 43 LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 102
Query: 1940 FKEACNLTLNYVLSNS 1955
+ TL++ S
Sbjct: 103 PSLYTSWTLSFTAPTS 118
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 29.6 bits (65), Expect = 3.5
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 228 TVQLIW--GPPGTGKTKTVSMLLVILLQMKFRTL 259
T ++I G GK+ + L +L +
Sbjct: 2 TTRMIILNGGSSAGKS-GIVRCLQSVLPEPWLAF 34
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 4.0
Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 12/182 (6%)
Query: 227 ATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERD 286
+V + G PG GK T LV K + V ++ R E ++
Sbjct: 8 VSVIFVLGGPGAGKG-TQCEKLV-----KDYSFVHLSAGDLLRAEQGRAGSQYGELIKNC 61
Query: 287 CRDALFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVEFL 346
++ P L L N + +L R D ++ F
Sbjct: 62 IKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFD 121
Query: 347 DNCVSQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERFKCI-IN 405
+E D N + IK K + P +E+ + K + +
Sbjct: 122 CPEDIMLERLLERGKTSGRSDDNIESIK-----KRFNTFKETSMPVIEYFETKSKVVRVR 176
Query: 406 GD 407
D
Sbjct: 177 CD 178
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.0 bits (67), Expect = 4.2
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTP--TIVAIKELASRVVKLVKE 281
L GP +GKT T++ L+ L K + + + + + ++
Sbjct: 158 LFKGPIDSGKT-TLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFED 209
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.6 bits (65), Expect = 4.3
Identities = 14/147 (9%), Positives = 43/147 (29%), Gaps = 2/147 (1%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDA 290
++ G PG GK+ ++ + IL + + ++ + + +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 291 LFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFA--PLTGWSHCFASMVEFLDN 348
+ E G I ++ + P + S++ L+
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124
Query: 349 CVSQYHTYMENESMKQSEDINGDIIKE 375
+ + ++ + D + + +
Sbjct: 125 DPKIILSRQKRDTTRNRNDYSDESVIL 151
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 29.5 bits (65), Expect = 4.3
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASR 274
K +L +S P G GKT + + L R V PT + + + A
Sbjct: 50 MWAKRILRKESF----AATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAET 105
Query: 275 VVKLVKE 281
+ K ++
Sbjct: 106 IRKYAEK 112
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.8 bits (65), Expect = 4.3
Identities = 12/48 (25%), Positives = 16/48 (33%)
Query: 214 LKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVC 261
+K L L++GP GTGK LL + L
Sbjct: 20 TNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 67
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 1073 EQLDMIL---FPRSTFIL--GRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETE 1127
E D I P L G SGTGKT I + L+N +E + E
Sbjct: 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSI------QFLYNGIIEFDEPGVFVTFEET 66
Query: 1128 AEKDLEKTER 1137
+ ++
Sbjct: 67 PQDIIKNARS 76
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 213
Score = 29.2 bits (64), Expect = 4.9
Identities = 22/206 (10%), Positives = 55/206 (26%), Gaps = 4/206 (1%)
Query: 1086 ILGRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETEAEKDLEKTERVILRQLFV 1145
+ G + +GK++V + N V SQ++ + + L+ F
Sbjct: 7 VSGGTASGKSSV--CAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFN 64
Query: 1146 TVSPKLCFAVKQHISHMKSSTIGGKFATEGSLIDTDDIDDAEKLKDIPNSFIDIPAKSYP 1205
P + + + + ++ + + Y
Sbjct: 65 FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS 124
Query: 1206 LVITFHKFLMMLDGTLCNSYFERFHNIWKNYGQLQNSKSVFIETIIRKKEVNYERFSSSY 1265
+ + + T ++ R + + I + +E F
Sbjct: 125 QEVRDLFQMKLFVDTDADTRLSRRVLRDISER--GRDLEQILSQYITFVKPAFEEFCLPT 182
Query: 1266 WPHFNAQLARKLDPSRVFTEIISHIK 1291
+ + + R D I+ HI+
Sbjct: 183 KKYADVIIPRGADNLVAINLIVQHIQ 208
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.5 bits (65), Expect = 5.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFR 257
L+ G PG+GKT S +
Sbjct: 36 LLGGQPGSGKTSLRSAIFEETQGNVIV 62
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 29.3 bits (64), Expect = 5.6
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 1073 EQLDMIL---FPRSTFIL--GRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETE 1127
+ LD +L + G TGK+ + + ++ + ++ T
Sbjct: 21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF 80
Query: 1128 AEKDL 1132
L
Sbjct: 81 RPVRL 85
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 88
Score = 27.6 bits (61), Expect = 5.7
Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 887 WKVNFSDNFLKSFRKLTSDQTKKLVINLLLKLASG-WRPEKRKVDSVCGSSLHIIKQFKV 945
++V +K+ + L + + L EK V + G+ + + ++
Sbjct: 3 YRVKIHKQVVKALQSL-PKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARL 61
Query: 946 EGFYIICTIDIVKESKYFQVLKV 968
+ +I +++ + K ++LK+
Sbjct: 62 GDYRVIYSVN--WKDKVIKILKL 82
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.3 bits (64), Expect = 6.1
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 1073 EQLDMIL---FPRSTFIL--GRSGTGKTTVLIMKLFQKEKLHNMALEGFFGVNNSSQETE 1127
+ LD +L G G+GKT + + + ++ T
Sbjct: 23 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 82
Query: 1128 AEKDLEK 1134
+ + +
Sbjct: 83 RPERIRE 89
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach
(Spinacia oleracea) [TaxId: 3562]}
Length = 112
Score = 27.8 bits (62), Expect = 6.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1721 RSKASGLKAAADRISSSNPLEARIILREAAK-IFEAIGKVDSAAK 1764
R +AS L+ + S+ P + + L+E +F +I +D AAK
Sbjct: 42 RLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAK 86
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.9 bits (64), Expect = 6.4
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSML 247
L+ +K ++ G ++ LI G + + L
Sbjct: 2 QLETLKRIIEKSEGISI-LINGEDLSYPREVSLEL 35
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.9 bits (64), Expect = 6.8
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 228 TVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKE 270
V L+ G G GKT T+ L Q ++
Sbjct: 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA 52
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 7.2
Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 30/194 (15%)
Query: 231 LIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTIVAIKELASRVVKLVKESVERDCRDA 290
++ G PG G T T S L + L+ + +V+ + V K +RD
Sbjct: 5 VVTGVPGVGST-TSSQLAMDNLRKEGVNYK----MVSFGSVMFEVAKEENLVSDRDQMRK 59
Query: 291 LFFPLGEILLLGNNERLKVDSGVEEIYLDYRVKRLADCFAPLTGWSHCFASMVEFLDNCV 350
+ + + ++ + + +D + L + V
Sbjct: 60 MDPETQKRIQKMAGRKIAEMAKESPVAVDT------------HSTVSTPKGYLPGLPSWV 107
Query: 351 SQYHTYMENESMKQSEDINGDIIKEKECGKEADASDVEIKPFLEFVRERF---------- 400
++ + D E + I+ +F+
Sbjct: 108 LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIE-QHQFMNRCAAMSYGVLTGA 166
Query: 401 --KCIINGDIIKEK 412
K + N + + ++
Sbjct: 167 TVKIVQNRNGLLDQ 180
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 29.1 bits (65), Expect = 7.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 204 IWNSLHMKGNLKIIKELLCTDSGATVQLIWGPPGTGKT 241
++ S MK L+ IK++ C + V LI G G GK
Sbjct: 3 VFESPKMKEILEKIKKISCAE--CPV-LITGESGVGKE 37
>d1lm8v_ b.3.3.1 (V:) VHL {Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 28.3 bits (63), Expect = 7.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 1042 MKFYSL---SLGVVRHLLSDRDARELDLPFEVTDE 1073
+ Y+L L VVR L+ + R LD+ + ++
Sbjct: 94 LPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYED 128
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.4 bits (65), Expect = 7.4
Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 46/175 (26%)
Query: 2086 LECLKSQNFNDYRSYGDFCLNYLGVWRQYN-NTNIIYLLLNGDAEWVRDLNN------GH 2138
+ L S + + + + YL + N N+ +I L+ N DL + G
Sbjct: 72 VNLLSSNRYTEKQ------IGYLFISVLVNSNSELIRLINN---AIKNDLASRNPTFMGL 122
Query: 2139 ALRSGNLASINVHQLVSAGRNYWSSELFSVGTKVLDNLEALHKQSSENSPSVWCHVLCLA 2198
AL +A++ ++ A + + LCL
Sbjct: 123 ALHC--IANVGSREMAEA---------------FAGEIPKILVAGDTMDSVKQSAALCLL 165
Query: 2199 YIYEVA-------------KFLLSSNYSSLQYHAKVLQKFIDQSTEHLFDFIFPL 2240
+Y + LL+ + + A L + Q F L
Sbjct: 166 RLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSL 220
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.1 bits (64), Expect = 7.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 215 KIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFR 257
+I +L A I G PG GK+ T+ L +L +
Sbjct: 39 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK 81
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (63), Expect = 7.9
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 209 HMKGNLKI-IKELLCTDSGATVQLIWGPPGTGKTKTVSML 247
++K L + ++ L+ GPPG GKT ++
Sbjct: 16 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 55
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 29.0 bits (64), Expect = 8.5
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 36 IFNEDLFKDKVKRIPFSFRSVGQYFESFVFPLLEETRANLMSGMEKISNAPFAQVVAFED 95
+F +++ K K + + + PL+E + + GM K + F AF+
Sbjct: 253 VFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 312
Query: 96 SKPYG 100
++P
Sbjct: 313 ARPSD 317
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.0 bits (63), Expect = 8.9
Identities = 6/53 (11%), Positives = 13/53 (24%)
Query: 213 NLKIIKELLCTDSGATVQLIWGPPGTGKTKTVSMLLVILLQMKFRTLVCTPTI 265
L + + G G GKT + + + + +
Sbjct: 32 YLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 84
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.8 bits (63), Expect = 9.0
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 209 HMKGNLKIIKELLCTDSGATVQ-LIWGPPGTGKTKT 243
+K L++ E L++GPPG GKT
Sbjct: 16 RLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 51
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.4 bits (62), Expect = 9.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 231 LIWGPPGTGKT 241
L+ GPP +GKT
Sbjct: 44 LLEGPPHSGKT 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 9,686,417
Number of extensions: 473872
Number of successful extensions: 1518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1512
Number of HSP's successfully gapped: 89
Length of query: 2576
Length of database: 2,407,596
Length adjustment: 101
Effective length of query: 2475
Effective length of database: 1,020,866
Effective search space: 2526643350
Effective search space used: 2526643350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.0 bits)